Query 001535
Match_columns 1058
No_of_seqs 911 out of 4807
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 17:09:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001535.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_835-839//hhsearch_pdb/001535hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 597.1 60.8 620 338-1037 609-1248(1249)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 575.9 77.2 566 338-1035 10-577 (577)
3 1nr0_A Actin interacting prote 1.0 1 1 554.1 69.7 575 343-1037 17-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 533.3 60.5 559 400-1048 609-1217(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 528.0 71.8 537 400-1048 10-548 (577)
6 1nr0_A Actin interacting prote 1.0 1 1 524.2 67.1 546 327-992 43-610 (611)
7 1pgu_A Actin interacting prote 1.0 1 1 518.3 65.9 559 342-1039 16-615 (615)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 512.7 66.1 600 336-1047 9-792 (902)
9 1pgu_A Actin interacting prote 1.0 1 1 468.2 60.9 534 327-993 43-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 458.8 55.2 614 327-1034 43-824 (902)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=597.07 Aligned_cols=620 Identities=14% Similarity=0.174 Sum_probs=500.2
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 89523898389999605898089997332139999736897013456112114545765322214579856699998789
Q 001535 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1058)
Q Consensus 338 ~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd 417 (1058)
....+|.+.|++++|+|+|+ ++|+|+.||.|++||+.+++.+.. +.+|.+.|.+++|+|+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 668 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSD 668 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECC
T ss_conf 78716666489999879999-899994889499999899978887-------------------6067777899999269
Q ss_pred CCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECCCCC
Q ss_conf 9989999689949999802898530003420455676799962699806999981899299992-679734884154578
Q 001535 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1058)
Q Consensus 418 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~ 496 (1058)
+++|++++.|+.|++||+.+++.+. .+.+|...|.+++|++++...++++++.|+.|++|| .++.++..+.+|...
T Consensus 669 ~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 669 DSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745 (1249)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred CCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCC
T ss_conf 9989998189959998779993689---9958997379999840899659999808970999989996342201277797
Q ss_pred EEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECC-------------CCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 56985023699509999840795999966899814776279-------------98179999845999899973067999
Q 001535 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGD 563 (1058)
Q Consensus 497 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~i~~s~~~~~l~~~~~~~~~~ 563 (1058)
|.+++|++ ++..+++++.||.|++||+..+.....+... ...+.+++|+|++..+++++ +
T Consensus 746 v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~ 818 (1249)
T 3sfz_A 746 VNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----K 818 (1249)
T ss_dssp EEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----T
T ss_pred EEEEEEEC--CCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-----C
T ss_conf 88999925--9998999978985999968888655302023210246776445650179999978998899975-----8
Q ss_pred CEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCE
Q ss_conf 54999938988135565066685202999917999999995998199997899822368506899999762785089989
Q 001535 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1058)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 643 (1058)
+.+.+|+..++.....+...+...+.+++|+|++..+++++.|+.|++|+..++.....+.. |...|.+++|+|++..
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG--HLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSE
T ss_pred CCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCC--CCCCEEEEEECCCCCE
T ss_conf 95999995689723577478777607999827888899994798699998678956532278--7665689999899998
Q ss_pred EEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCC--CCCCCCCCCCC
Q ss_conf 9999889949999856796100112498743446864202431035531025899861000258898--87621488888
Q 001535 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR--PSPIINGVDPT 721 (1058)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 721 (1058)
+++++.|+.+++|+............. ......+.+++..++................. ...........
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLK--------QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEE--------EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred EEEEECCCEEEEEECCCCCEEEEECCC--------CEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEE
T ss_conf 999958972898874665201021133--------103689759986899813776248984476508972567278999
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCC
Q ss_conf 77889883137888998753013564189627997168878856379999833765289831267068865203446989
Q 001535 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 801 (1058)
Q Consensus 722 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~ 801 (1058)
+++++..+++++.++.+.+|+.... .. ...+.. |...|.+++|+|++..+++++.||.+++|++..+.
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~----~~-~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~---- 1036 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNN----RV-FSSGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD---- 1036 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTT----SC-EEECCC---CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE----
T ss_pred ECCCCCEEEEECCCCCEEEEECCCC----CE-EEECCC---CCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCC----
T ss_conf 9589977999869998899975787----23-443036---77716899998999989998699879999879996----
Q ss_pred CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 85222225301036887524530158889988419998139989999939919999779850999942999983599992
Q 001535 802 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFH 881 (1058)
Q Consensus 802 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 881 (1058)
... .. .|...+.++++++++.+++.+.++.|++||+.+++....+.+|...|.+++|+
T Consensus 1037 ------------------~~~--~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s 1094 (1249)
T 3sfz_A 1037 ------------------YVF--LQ--AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094 (1249)
T ss_dssp ------------------EEC--CB--CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEEC
T ss_pred ------------------EEE--EE--CCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEC
T ss_conf ------------------689--85--27873899999089958999788968998889886558874668848999998
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEE----EC
Q ss_conf 69996999997999799998437643367325678846999818999899993999599998788840102898----32
Q 001535 882 PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI----HI 957 (1058)
Q Consensus 882 ~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~----~~ 957 (1058)
| +++++++++.||+|++|++.+++.+..+.+|.+.|++++|+||+++|++++.||.|++||+.+++....... ..
T Consensus 1095 ~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1173 (1249)
T 3sfz_A 1095 S-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG 1173 (1249)
T ss_dssp S-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC----
T ss_pred C-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 9-999899984999489987898500125506877679999979999899982899799998899945788514444421
Q ss_pred CCCCCCCCCEEEEECCCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 79989999408998579989999978839999877880333411278898897999990189899999689939999689
Q 001535 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 958 ~~~~~~~~v~~i~fs~d~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
..++. ..+.+++|+||+++++++. +.+++||+.+++.+..+..+ ...+.+++|+||++++++++.||.|++|++.
T Consensus 1174 ~~~~~-~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~---~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1174 TATHG-GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTN---GTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp ---CC-SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCS---SCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred CCCCC-CEEEEEEECCCCCEEEECC-CEEEEEECCCCCEEEEEECC---CCCCCEEEECCCCCEEEEECCCCEEEEEEEC
T ss_conf 02567-4289999978999899779-85999898889500464004---7753279997898779996688179997643
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=575.92 Aligned_cols=566 Identities=20% Similarity=0.349 Sum_probs=479.5
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 89523898389999605898089997332139999736897013456112114545765322214579856699998789
Q 001535 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1058)
Q Consensus 338 ~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd 417 (1058)
.+..+|++.|+|++|||||+ +||+|+.|++|+|||. +++.+. .+.+|.+.|.+++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred EEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEEC-CCCEEE-------------------EEECCCCCEEEEEECCC
T ss_conf 39878998579999989989-9999938998999979-997899-------------------99689899899999899
Q ss_pred CCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCE
Q ss_conf 99899996899499998028985300034204556767999626998069999818992999926797348841545785
Q 001535 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (1058)
Q Consensus 418 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v 497 (1058)
+++||+++.|++|++||.. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+..........++...+
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v 142 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSV 142 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCE
T ss_pred CCEEEEEECCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEECCCCCEEECCCCCCEEEECCCCCCCE
T ss_conf 9999999698979999899-97899---9978999889999989999--8999807983352023552001104777743
Q ss_pred EEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEE
Q ss_conf 69850236995099998407959999668998147762799817999984599989997306799954999938988135
Q 001535 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1058)
Q Consensus 498 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1058)
..+.+.+ ++..+++++.++.+++|+.. .........+...+.++.++|++..+++++. ++.+++|+. +++.+
T Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~ 214 (577)
T 2ymu_A 143 WGVAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLL 214 (577)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEE
T ss_pred EEEEEEC--CCCCCEECCCCCCEECCCCC-EEEEEECCCCCCCEEEEEECCCCCEEEEECC----CCEEEEEEC-CCCEE
T ss_conf 5554203--77632002555310000000-0000002687763566541699778999859----998999949-99689
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 56506668520299991799999999599819999789982236850689999976278508998999998899499998
Q 001535 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1058)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw~ 657 (1058)
..+.+|.. .+.+++|+|++.++++++.|+.|++|+. +++.+..+.. +...|.+++|+|++..+++++.|+.+++|+
T Consensus 215 ~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~--~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 215 QTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp EEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEEC--CCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 99946889-8899999799999999918998999959-9979999806--889879999968999999995999799994
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56796100112498743446864202431035531025899861000258898876214888887788988313788899
Q 001535 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDK 737 (1058)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 737 (1058)
... .....+.++ ...+.+++|+|+++.+ ++++.|+.
T Consensus 291 ~~~--~~~~~~~~h-----~~~v~~~~~~~~~~~l-------------------------------------~t~~~d~~ 326 (577)
T 2ymu_A 291 RNG--QLLQTLTGH-----SSSVWGVAFSPDGQTI-------------------------------------ASASDDKT 326 (577)
T ss_dssp TTS--CEEEEECCC-----SSCEEEEEECTTSSEE-------------------------------------EEEETTSC
T ss_pred CCC--CEEEEEECC-----CCCEEEEEECCCCCEE-------------------------------------EEEECCCE
T ss_conf 899--589997068-----8976999999999999-------------------------------------99969995
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 87530135641896279971688788563799998337652898312670688652034469898522222530103688
Q 001535 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (1058)
Q Consensus 738 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~ 817 (1058)
+++|+... ... ..+.. |...+.+++|+|++..+++++.||.+++|+..
T Consensus 327 i~~w~~~~----~~~--~~~~~---~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~----------------------- 374 (577)
T 2ymu_A 327 VKLWNRNG----QHL--QTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----------------------- 374 (577)
T ss_dssp EEEEETTS----CEE--EEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----------------------
T ss_pred EEEEECCC----CEE--EEEEC---CCCCEEEEEECCCCCEEEEEECCCEEEEECCC-----------------------
T ss_conf 99996999----725--78747---88977999998999999999699989999089-----------------------
Q ss_pred CCEEEEECCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 752453015888998841999813998999993-9919999779850999942999983599992699969999979997
Q 001535 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (1058)
Q Consensus 818 ~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~ 896 (1058)
+..+. .+.+ |...|.+++|+||++++++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.
T Consensus 375 ~~~~~-~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 375 GQLLQ-TLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKT 449 (577)
T ss_dssp CCEEE-EEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred CCEEE-EECC--CCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEECCCCE
T ss_conf 97899-8527--8897489999899999999949998999969-9978989628899757999989-9999999939998
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCEEEEECCCCC
Q ss_conf 99998437643367325678846999818999899993999599998788840102898327998999940899857998
Q 001535 897 IHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1058)
Q Consensus 897 i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~i~fs~d~~ 976 (1058)
|++|+. +++.+..+.+|...|++++|+||+++|++++.|+.|++||. ++++...+. +|. ..+++++|+||++
T Consensus 450 v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~-----~h~-~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 450 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-----GHS-SSVRGVAFSPDGQ 521 (577)
T ss_dssp EEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE-----CCS-SCEEEEEECTTSS
T ss_pred EEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEE-----CCC-CCEEEEEECCCCC
T ss_conf 999979-99889997278997789999699999999919897999939-997899986-----799-9989999918999
Q ss_pred EEEEE-ECCEEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 99999-788399998778803334112788988979999901898999996899399996
Q 001535 977 RMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1058)
Q Consensus 977 ~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~ 1035 (1058)
+|+++ .|+.|++||. +++.+..+..| ...|++++|+|||++|++++.|++|++||
T Consensus 522 ~l~s~~~dg~v~lwd~-~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 522 TIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSEEEEECT-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEECCCEEEEEEC-CCCEEEEECCC---CCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999989699999969-99789897188---88878999968999999990899999969
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=554.06 Aligned_cols=575 Identities=15% Similarity=0.215 Sum_probs=433.8
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 89838999960589808999733213999973689701345611211454576532221457985669999878999899
Q 001535 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1058)
Q Consensus 343 h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 422 (1058)
+.+.+.+++|+|||+ ++|+++ ++.|++|++.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCC-EEEECC-CCEEEEECCCCCCCCE-------------------EECCCCCCEEEEEECCCCCEEE
T ss_conf 068236976679999-799679-9979994578724273-------------------7658998659999999996899
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECC----CCEEEEECCCCEEEEEECCCCCEE
Q ss_conf 9968994999980289853000342045567679996269980699998189----929999267973488415457856
Q 001535 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (1058)
Q Consensus 423 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~h~~~v~ 498 (1058)
+|+.|++|++||+.+++... ...+.+|.+.|.+++|+|+++ .+++++.+ +.|++|| .+.....+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEECCCCEEEEECCCCCCEE-EEEECCCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEEEE-CCCCCCEECCCCCCCE
T ss_conf 99489978994898984156-676225578448999899999--7999989977366999963-8997632547889836
Q ss_pred EEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEE
Q ss_conf 98502369950999984079599996689981477627998179999845999899973067999549999389881355
Q 001535 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1058)
Q Consensus 499 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1058)
+++|+|+.. ..+++++.|++|++||.........+..|...|.+++|+|+++++++++. |+.|++||..+++...
T Consensus 152 ~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCCC-EEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC----CCCEEEEECCCCCEEE
T ss_conf 999889998-29999928980999979997576652002571699999799998999989----9919998899982866
Q ss_pred EEE-------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCC-CCCCCEEEEECCCCEEEEEECC
Q ss_conf 650-------66685202999917999999995998199997899822368506899-9997627850899899999889
Q 001535 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTAD 650 (1058)
Q Consensus 579 ~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~d 650 (1058)
.+. +|.. .+.+++|+|++.+|++++.|+.|++||+.+++....+..... ......+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred EECCCCCCCCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECC
T ss_conf 51366432356678-7899999799999999908980999968887013440478876640689997--38879999589
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 94999985679610011249874344686420243103553102589986100025889887621488888778898831
Q 001535 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1058)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1058)
+.+++|+...+ .....+.+| ...|.+++|+|+++.+ +
T Consensus 304 ~~i~~~~~~~~-~~~~~~~gh-----~~~v~~l~~spdg~~l-------------------------------------~ 340 (611)
T 1nr0_A 304 GFINFVNPELG-SIDQVRYGH-----NKAITALSSSADGKTL-------------------------------------F 340 (611)
T ss_dssp CCEEEEETTTT-EEEEEECCC-----SSCEEEEEECTTSSEE-------------------------------------E
T ss_pred CCEEEEECCCC-CCCEEECCC-----CCCEEEEEEECCCCEE-------------------------------------E
T ss_conf 96899968899-744698378-----8888999991899989-------------------------------------9
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 37888998753013564189627997168878856379999833765289831267068865203446989852222253
Q 001535 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1058)
Q Consensus 731 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~ 810 (1058)
+++.|+.+++|++... ..... + ..+|...+.+++|++++ .+++++.|+.+++|+.........
T Consensus 341 s~s~D~~v~~Wd~~~~----~~~~~-~--~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~--------- 403 (611)
T 1nr0_A 341 SADAEGHINSWDISTG----ISNRV-F--PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS--------- 403 (611)
T ss_dssp EEETTSCEEEEETTTC----CEEEC-S--SCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT---------
T ss_pred EEECCCCEEEEECCCC----CEEEE-C--CCCCCCEEEEEEECCCC-CEEEEECCCCEEEEECCCCCCCCC---------
T ss_conf 9958984999978879----25632-1--66776507899987899-699998489668954688543565---------
Q ss_pred EEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEE
Q ss_conf 01036887524530158889988419998139989999939919999779850999942999983599992699969999
Q 001535 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1058)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~las 890 (1058)
...... ......+++++++++.++++.++.+++|+. ++ +..+. |...+.+++|+| |+++||+
T Consensus 404 --------~~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~--~~-~~~~~-~~~~v~~va~sp-dg~~las 465 (611)
T 1nr0_A 404 --------KAVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYSH--GK-LTEVP-ISYNSSCVALSN-DKQFVAV 465 (611)
T ss_dssp --------SCCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEET--TE-EEEEE-CSSCEEEEEECT-TSCEEEE
T ss_pred --------CEEEEE-----CCCCCCEEEEECCCCEEEEEECCEEEEEEC--CC-EEEEE-CCCCCEEEEEEC-CCCEEEE
T ss_conf --------212001-----489970799807996999996763999848--94-34640-688954999928-9989999
Q ss_pred EECCCCEEEEECCCCEE--EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC-CCEECEEEEECCCCCCCCCCE
Q ss_conf 97999799998437643--367325678846999818999899993999599998788-840102898327998999940
Q 001535 891 GTEDSTIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKSVTIHIPAGKTPTGDT 967 (1058)
Q Consensus 891 g~~dg~i~iwd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~ 967 (1058)
|+.|++|++|++.++.. ... .+|...|++++|+||+++|++++.|++|++|++.+ ++..... ...+|. ..|.
T Consensus 466 gs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~---~~~~H~-~~V~ 540 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN---SWTFHT-AKVA 540 (611)
T ss_dssp EETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC---CCCCCS-SCEE
T ss_pred ECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEE---EEEECC-CCEE
T ss_conf 6899739999945992224101-5778860799998999989999489989998857787223210---264046-6425
Q ss_pred EEEECCCCCEEEEE-ECCEEEEEECCCCEE-E-EEECCCCCC-CCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 89985799899999-788399998778803-3-341127889-8897999990189899999689939999689
Q 001535 968 RVQFNADQVRMLVV-HETQLAIYDASKMER-I-RQWTPQDAL-SAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 968 ~i~fs~d~~~l~~~-~d~~i~i~d~~~~~~-~-~~~~~~~~~-~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
+++|+||+++|+++ .|+.|++|++.++.. . ..+. .| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 541 ~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~---~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 541 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG---AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT---SSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHC---CCCCCCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 8998998997999979972999978875556326444---67656711899858997-9995288778998444
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=533.31 Aligned_cols=559 Identities=15% Similarity=0.218 Sum_probs=464.6
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEE
Q ss_conf 21457985669999878999899996899499998028985300034204556767999626998069999818992999
Q 001535 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1058)
Q Consensus 400 ~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~i 479 (1058)
..+.+|.+.|++++|||||+++++|+.||.|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|+.|++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKI 683 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCC--EEEEEECCCEEEE
T ss_conf 7871666648999987999989999488949999989997888---7606777789999926999--8999818995999
Q ss_pred EE-CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 92-67973488415457856985023699509999840795999966899814776279981799998459998999730
Q 001535 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1058)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 558 (1058)
|| .+++.+..+.+|...|.+++|++..++.++++++.|+.|++||++++.....+..|...|.+++|+|+++.+++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 87799936899958997379999840899659999808970999989996342201277797889999259998999978
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCC------------CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCC
Q ss_conf 67999549999389881355650666------------852029999179999999959981999978998223685068
Q 001535 559 SKDGDSFLVEWNESEGTIKRTYAGFR------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1058)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1058)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+|+..++.....+..
T Consensus 764 ----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~- 837 (1249)
T 3sfz_A 764 ----DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT- 837 (1249)
T ss_dssp ----SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-
T ss_pred ----CCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCEEEECC-
T ss_conf ----985999968888655302023210246776445650179999978998899975-89599999568972357747-
Q ss_pred CCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf 99999762785089989999988994999985679610011249874344686420243103553102589986100025
Q 001535 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1058)
Q Consensus 627 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~ 706 (1058)
++...+.+++|+|++.++++++.++.|++|+..++ .....+.+ +...+.+++|+|+++.+
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~-----h~~~v~~v~~spdg~~l-------------- 897 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRG-----HLSWVHGVMFSPDGSSF-------------- 897 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECC-----CSSCEEEEEECTTSSEE--------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-CEEEECCC-----CCCCEEEEEECCCCCEE--------------
T ss_conf 87776079998278888999947986999986789-56532278-----76656899998999989--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--------------------------CCEEEEEECC-
Q ss_conf 8898876214888887788988313788899875301356418--------------------------9627997168-
Q 001535 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS--------------------------GQCRLVTMPE- 759 (1058)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~--------------------------~~~~~~~~~~- 759 (1058)
++++.|+.+++|+....... ..........
T Consensus 898 -----------------------~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1249)
T 3sfz_A 898 -----------------------LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG 954 (1249)
T ss_dssp -----------------------EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred -----------------------EEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC
T ss_conf -----------------------999589728988746652010211331036897599868998137762489844765
Q ss_pred --CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEE
Q ss_conf --878856379999833765289831267068865203446989852222253010368875245301588899884199
Q 001535 760 --STDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1058)
Q Consensus 760 --~~~~~~~i~~l~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 837 (1058)
.......+.+++++|++..+++++.+|.+.+|++... .... .+.+ |...|.++
T Consensus 955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~----------------------~~~~-~~~~--h~~~v~~l 1009 (1249)
T 3sfz_A 955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN----------------------RVFS-SGVG--HKKAVRHI 1009 (1249)
T ss_dssp CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT----------------------SCEE-ECCC--CSSCCCCE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC----------------------CEEE-ECCC--CCCCEEEE
T ss_conf 089725672789999589977999869998899975787----------------------2344-3036--77716899
Q ss_pred EEECCCCEEEEEE-CCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC
Q ss_conf 9813998999993-991999977985099994299998359999269996999997999799998437643367325678
Q 001535 838 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 916 (1058)
Q Consensus 838 ~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~ 916 (1058)
+|+|+++++++++ ||.|++||+.+++.. .+..|...+.+++|++ ++. +++++.||.|++|++.+++....+.+|.+
T Consensus 1010 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A 1010 QFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQ-DSR-LLSWSFDGTVKVWNVITGRIERDFTCHQG 1086 (1249)
T ss_dssp EECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECS-SSE-EEEEESSSEEEEEETTTTCCCEEEECCSS
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCCEE-EEECCCCCEEEEEECC-CCC-EEEEECCCCEEEEECCCCCEEEEECCCCC
T ss_conf 99899998999869987999987999668-9852787389999908-995-89997889689988898865588746688
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEECCCCE
Q ss_conf 84699981899989999399959999878884010289832799899994089985799899999-78839999877880
Q 001535 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKME 995 (1058)
Q Consensus 917 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~i~fs~d~~~l~~~-~d~~i~i~d~~~~~ 995 (1058)
.|++++|+||++++++++.|+.|++||+.++++...+. +|. ..+.+++|+||+++++++ .|+.|++|++.+++
T Consensus 1087 ~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~-----~h~-~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1087 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-----GHN-GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp CCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC-----CCS-SCEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEC-----CCC-CCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf 48999998999989998499948998789850012550-----687-767999997999989998289979999889994
Q ss_pred EEEEECC------CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCC
Q ss_conf 3334112------7889889799999018989999968993999968998298998586
Q 001535 996 RIRQWTP------QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1048 (1058)
Q Consensus 996 ~~~~~~~------~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 1048 (1058)
.+..+.. ...|...|++++|+|||+++++++ |.|++|++.+++.+..+..+
T Consensus 1161 ~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~ 1217 (1249)
T 3sfz_A 1161 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTN 1217 (1249)
T ss_dssp CCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCS
T ss_pred EEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC--CEEEEEECCCCCEEEEEECC
T ss_conf 5788514444421025674289999978999899779--85999898889500464004
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=527.99 Aligned_cols=537 Identities=20% Similarity=0.342 Sum_probs=395.7
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEE
Q ss_conf 21457985669999878999899996899499998028985300034204556767999626998069999818992999
Q 001535 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1058)
Q Consensus 400 ~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~i 479 (1058)
..|.||.+.|++++|||||++||+|+.|+.|++||. +++.++ ++.+|.+.|++++|+||++ +|++++.|++|++
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~v 83 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKL 83 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEE---EEECCCCCEEEEEECCCCC--EEEEEECCCEEEE
T ss_conf 398789985799999899899999938998999979-997899---9968989989999989999--9999969897999
Q ss_pred EECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 92679734884154578569850236995099998407959999668998147762799817999984599989997306
Q 001535 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1058)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~~ 559 (1058)
||.+++++..+.+|...|.+++|+| +++++++++.|+.+++|+... ........+...+..+.+++++..++..+
T Consensus 84 Wd~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-- 158 (577)
T 2ymu_A 84 WNRNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS-- 158 (577)
T ss_dssp EETTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEE--
T ss_pred EECCCCEEEEEECCCCCEEEEEECC--CCCEEEEECCCCCEEECCCCC-CEEEECCCCCCCEEEEEEECCCCCCEECC--
T ss_conf 9899978999978999889999989--999899980798335202355-20011047777435554203776320025--
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEC
Q ss_conf 79995499993898813556506668520299991799999999599819999789982236850689999976278508
Q 001535 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1058)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~ 639 (1058)
.+..+.+|+.. .........+.. .+..+.++|++.++++++.|+.|++|+. +++.+..+.. +...|.+++|+|
T Consensus 159 --~~~~~~~~~~~-~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~--~~~~v~~~~~s~ 231 (577)
T 2ymu_A 159 --DDKTVKLWNRN-GQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSP 231 (577)
T ss_dssp --TTSEEEEECTT-SCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC--CSSCEEEEEECT
T ss_pred --CCCCEECCCCC-EEEEEECCCCCC-CEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEEEC--CCCCEEEEEECC
T ss_conf --55310000000-000000268776-3566541699778999859998999949-9968999946--889889999979
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99899999889949999856796100112498743446864202431035531025899861000258898876214888
Q 001535 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (1058)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1058)
++.++++++.|+.+++|+... .....+.++ ...+.+++|+|+++.+
T Consensus 232 dg~~l~~~~~d~~i~~w~~~~--~~~~~~~~~-----~~~v~~v~~~~d~~~l--------------------------- 277 (577)
T 2ymu_A 232 DGQTIASASDDKTVKLWNRNG--QLLQTLTGH-----SSSVNGVAFRPDGQTI--------------------------- 277 (577)
T ss_dssp TSSCEEEEETTSCEEEECTTS--CEEEEECCC-----SSCEEEEEECTTSSEE---------------------------
T ss_pred CCCEEEEEECCCEEEEEECCC--CEEEEEECC-----CCCEEEEEECCCCCEE---------------------------
T ss_conf 999999991899899995999--799998068-----8987999996899999---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEECCCCC
Q ss_conf 88778898831378889987530135641896279971688788563799998337652898312670688652034469
Q 001535 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (1058)
Q Consensus 720 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~i~iw~~~~~~~~ 799 (1058)
++++.++.+++|+... .. ...+.+ |...|.+++|+|++..+++++.||.+++|+.....
T Consensus 278 ----------~~~~~d~~i~~w~~~~-----~~-~~~~~~---h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-- 336 (577)
T 2ymu_A 278 ----------ASASDDKTVKLWNRNG-----QL-LQTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-- 336 (577)
T ss_dssp ----------EEEETTSCEEEEETTS-----CE-EEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--
T ss_pred ----------EEEECCCEEEEEECCC-----CE-EEEEEC---CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE--
T ss_conf ----------9995999799994899-----58-999706---88976999999999999999699959999699972--
Q ss_pred CCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEECCCCEEEEEECCCCCCEEEE
Q ss_conf 898522222530103688752453015888998841999813998999993-9919999779850999942999983599
Q 001535 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFL 878 (1058)
Q Consensus 800 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l 878 (1058)
.. .+.+ |...+.+++|+|+++++++++ ++.+++|+. +++.+..+.+|...|+++
T Consensus 337 --------------------~~--~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~ 391 (577)
T 2ymu_A 337 --------------------LQ--TLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV 391 (577)
T ss_dssp --------------------EE--EECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEE
T ss_pred --------------------EE--EEEC--CCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEECCCCCCEEEE
T ss_conf --------------------57--8747--8897799999899999999969998999908-997899852788974899
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECEEEEECC
Q ss_conf 99269996999997999799998437643367325678846999818999899993999599998788840102898327
Q 001535 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958 (1058)
Q Consensus 879 ~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 958 (1058)
+|+| ++++|++++.|+.|++|+. +++.+..+.+|...|++++|+||+++|++++.|+.|++||... +....+.
T Consensus 392 ~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~---- 464 (577)
T 2ymu_A 392 AFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLT---- 464 (577)
T ss_dssp EECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEE----
T ss_pred EECC-CCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC-CEEEEEC----
T ss_conf 9989-9999999949998999969-9978989628899757999989999999993999899997999-8899972----
Q ss_pred CCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 99899994089985799899999-78839999877880333411278898897999990189899999689939999689
Q 001535 959 AGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1058)
Q Consensus 959 ~~~~~~~v~~i~fs~d~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~t~~~dg~i~iw~~~ 1037 (1058)
++. ..+.+++|+||+++|+++ .|+.|++|+. +++.+..+..| ...|++++|+||+++|++++.|+.|++||.
T Consensus 465 -~~~-~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~- 537 (577)
T 2ymu_A 465 -GHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNR- 537 (577)
T ss_dssp -CCS-SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSEEEEECT-
T ss_pred -CCC-CCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEECC---CCCEEEEEECCCCCEEEEEECCCEEEEEEC-
T ss_conf -789-97789999699999999919897999939-99789998679---999899999189999999989699999969-
Q ss_pred CCEEEEEECCC
Q ss_conf 98298998586
Q 001535 1038 TLRLRCYIAPS 1048 (1058)
Q Consensus 1038 ~~~~~~~~~~~ 1048 (1058)
+++.+..+.+|
T Consensus 538 ~~~~~~~~~~h 548 (577)
T 2ymu_A 538 NGQLLQTLTGH 548 (577)
T ss_dssp TSCEEEEEECC
T ss_pred CCCEEEEECCC
T ss_conf 99789897188
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=524.19 Aligned_cols=546 Identities=15% Similarity=0.207 Sum_probs=431.2
Q ss_pred CCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 34568988633895238983899996058980899973321399997368970134561121145457653222145798
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1058)
+|++... .......+|.+.|++++|||+|+ +||+|+.|++|+|||+.+++.... ..+.+|.
T Consensus 43 l~~~~~~-~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-----------------~~~~~~~ 103 (611)
T 1nr0_A 43 TVPVGSL-TDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-----------------TTIPVFS 103 (611)
T ss_dssp EEETTCS-SCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-----------------EEEECSS
T ss_pred EECCCCC-CCCEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCEEE-----------------EEECCCC
T ss_conf 9457872-42737658998659999999996-899994899789948989841566-----------------7622557
Q ss_pred CCEEEEEECCCCCEEEEEECC----CEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-
Q ss_conf 566999987899989999689----949999802898530003420455676799962699806999981899299992-
Q 001535 407 ISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1058)
Q Consensus 407 ~~V~~i~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd- 481 (1058)
+.|.+++|+||+++|++++.+ +.|++|| .+.... .+.+|...|++++|+|++.. .+++++.|++|++||
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEG 177 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCC---EECCCCCCCEEEEECCCCCE-EEEEEECCCEEEEEEC
T ss_conf 84489998999997999989977366999963--899763---25478898369998899982-9999928980999979
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEE-------CCCCCEEEEEECCCCCEEE
Q ss_conf 679734884154578569850236995099998407959999668998147762-------7998179999845999899
Q 001535 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLF 554 (1058)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~i~~s~~~~~l~ 554 (1058)
.+++++..+.+|...|.+++|+| +++++++++.|++|++||+.++.....+. .|...|.+++|+|++++++
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CCCEEEEEECCCCCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEE
T ss_conf 99757665200257169999979--9998999989991999889998286651366432356678789999979999999
Q ss_pred EEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCC
Q ss_conf 97306799954999938988135565066685--2029999179999999959981999978998223685068999997
Q 001535 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1058)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1058)
+++. |+.|++||+.+++.+.++..+... ....+.| ++..+++++.|+.+++|+...+.....+. +|...|
T Consensus 256 s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~--gh~~~v 327 (611)
T 1nr0_A 256 SASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRY--GHNKAI 327 (611)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEEC--CCSSCE
T ss_pred EEEC----CCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCCCCCEEEC--CCCCCE
T ss_conf 9908----980999968887013440478876640689997--38879999589968999688997446983--788888
Q ss_pred CEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 62785089989999988994999985679610011249874344686420243103553102589986100025889887
Q 001535 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1058)
Q Consensus 633 ~~i~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1058)
.+++|+|+++++++++.|+.|++|++.++... .... ..+...+.++++++++.
T Consensus 328 ~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~-~~~~----~~h~~~v~~~~~s~~~~---------------------- 380 (611)
T 1nr0_A 328 TALSSSADGKTLFSADAEGHINSWDISTGISN-RVFP----DVHATMITGIKTTSKGD---------------------- 380 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEE-ECSS----CSCSSCEEEEEECTTSC----------------------
T ss_pred EEEEEECCCCEEEEEECCCCEEEEECCCCCEE-EECC----CCCCCEEEEEEECCCCC----------------------
T ss_conf 99999189998999958984999978879256-3216----67765078999878996----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-EEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 621488888778898831378889987530135641896-2799716887885637999983376528983126706886
Q 001535 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ-CRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1058)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~i~iw 791 (1058)
+++++.|+.+++|+......... ..... .......++|+|++..++++ .++.+++|
T Consensus 381 ----------------l~s~s~d~~v~~w~~~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~~~~~-~~~~v~~~ 437 (611)
T 1nr0_A 381 ----------------LFTVSWDDHLKVVPAGGSGVDSSKAVANK------LSSQPLGLAVSADGDIAVAA-CYKHIAIY 437 (611)
T ss_dssp ----------------EEEEETTTEEEEECSSSSSSCTTSCCEEE------CSSCEEEEEECTTSSCEEEE-ESSEEEEE
T ss_pred ----------------EEEEECCCCEEEEECCCCCCCCCCEEEEE------CCCCCCEEEEECCCCEEEEE-ECCEEEEE
T ss_conf ----------------99998489668954688543565212001------48997079980799699999-67639998
Q ss_pred EEECCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEECCCCEE--EEEE
Q ss_conf 52034469898522222530103688752453015888998841999813998999993-99199997798509--9994
Q 001535 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV--MTTF 868 (1058)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~-dg~i~iwd~~~~~~--~~~~ 868 (1058)
+- +... .+ .+...+.+++|+|||+++|+++ |++|++||+.++.. ...
T Consensus 438 ~~------------------------~~~~--~~---~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~- 487 (611)
T 1nr0_A 438 SH------------------------GKLT--EV---PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT- 487 (611)
T ss_dssp ET------------------------TEEE--EE---ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-
T ss_pred EC------------------------CCEE--EE---ECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-
T ss_conf 48------------------------9434--64---068895499992899899996899739999945992224101-
Q ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC-CEEEEE--ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 299998359999269996999997999799998437-643367--32567884699981899989999399959999878
Q 001535 869 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKSK--LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945 (1058)
Q Consensus 869 ~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~-~~~~~~--~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~ 945 (1058)
.+|...|++++|+| ++++|++++.|++|++|++.+ +++... +.+|...|.+++|+||+++|++++.|++|++|++.
T Consensus 488 ~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 488 IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 57788607999989-99989999489989998857787223210264046642589989989979999799729999788
Q ss_pred CCCEECEEEEECCCCCCCCCCEEEEECCCCCEEEE-EECCEEEEEECC
Q ss_conf 88401028983279989999408998579989999-978839999877
Q 001535 946 TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS 992 (1058)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~v~~i~fs~d~~~l~~-~~d~~i~i~d~~ 992 (1058)
++.... .....+|....+.+++|+||+. |++ +.|+.|++|+++
T Consensus 567 ~~~~~~---~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 567 KPSDHP---IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CTTSCC---EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCCCCC---CHHHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 755563---2644467656711899858997-9995288778998444
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=518.28 Aligned_cols=559 Identities=12% Similarity=0.197 Sum_probs=473.0
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCC----CCCCCCCCEEECCCCCCCCCCCCCCCCCCCC-EEEEEECC
Q ss_conf 389838999960589808999733213999973689----7013456112114545765322214579856-69999878
Q 001535 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (1058)
Q Consensus 342 ~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~sp 416 (1058)
.|.+.|.+++|+|+|+ ++++++ ++.|.+|++.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CCCCCEEEEEECCCCC-EEEEEC-CCEEEEEECCCCCCCCCCCE-------------------EEECCCCCEEEEEEECC
T ss_conf 7658536899889999-799935-98499997778877651431-------------------88057884499999796
Q ss_pred --CCCEEEEEECCCEEEEEEECCCC-----CCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECC----CCEEEEECCCC
Q ss_conf --99989999689949999802898-----53000342045567679996269980699998189----92999926797
Q 001535 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (1058)
Q Consensus 417 --dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d----~~i~iwd~~~~ 485 (1058)
++++|++++.||.|++||+.++. .......+..|...|.+++|+|+++ ++++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCC--EEEEECCCCCCCCEEEEEE-CCC
T ss_conf 7899889996489879997688876554455420001112566379999907999--8999316877755799997-898
Q ss_pred EEEEEECCCCCEEEEEECCCCCCE-EEEEEEECCEEEEEECCCCCCEEEEECCCC---CEEEEEECCC-CCEEEEEECCC
Q ss_conf 348841545785698502369950-999984079599996689981477627998---1799998459-99899973067
Q 001535 486 KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSK 560 (1058)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~i~~s~~-~~~l~~~~~~~ 560 (1058)
.+..+.+|...|.+++|++. +. .+++++.|+.|++||+........+..+.. .+.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--
T ss_pred CCEEEECCCCCEEEEEECCC--CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEC--
T ss_conf 10313067743889998878--99689999579959999699961013202567777428999978977888999868--
Q ss_pred CCCCEEEEEECCCCCEEEEE-E---CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC--CCCCCCE
Q ss_conf 99954999938988135565-0---6668520299991799999999599819999789982236850689--9999762
Q 001535 561 DGDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--GLPNLPR 634 (1058)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~ 634 (1058)
++.|++||+.+++.+..+ . .|.. .+.+++|+ ++.++++++.|+.|++||+.+++....+..+. ....+.+
T Consensus 228 --dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 228 --DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp --TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred --CCEEEEEECCCCCEEEEECCCCCCCCC-CEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEE
T ss_conf --980899989999785895254445677-55899981-89979998489948999788892787884787754571469
Q ss_pred EEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 78508998999998899499998567961001124987434468642024310355310258998610002588988762
Q 001535 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1058)
Q Consensus 635 i~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1058)
+.|. ++.++++++.++.+++|++.++ .....+.++ ..++.+++| |+
T Consensus 304 ~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~-----~~~v~~~~~-~~-------------------------- 349 (615)
T 1pgu_A 304 VVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGH-----NKGITALTV-NP-------------------------- 349 (615)
T ss_dssp EEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCC-----SSCEEEEET-TT--------------------------
T ss_pred EEEC-CCCEEEEEECCCCEEEEECCCC-CEEEEEECC-----CCCEEEEEE-CC--------------------------
T ss_conf 9918-9976999978997899988899-288999477-----787899995-67--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEE
Q ss_conf 14888887788988313788899875301356418962799716887885637999983376528983126706886520
Q 001535 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1058)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~i~iw~~~ 794 (1058)
+++++.|+.+++|++. .+. . .|...|.+++| +++..+++++.||.+++|++.
T Consensus 350 --------------l~~~~~dg~i~~w~~~---------~~~-~---~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 350 --------------LISGSYDGRIMEWSSS---------SMH-Q---DHSNLIVSLDN-SKAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp --------------TEEEETTSCEEETTTT---------EEE-C---CCCSCEEEEEC-CSTTCCEEEETTTEEEETTEE
T ss_pred --------------CEEECCCCEEEEEECH---------HHC-C---CCCCCEEEEEE-CCCCEEEEEECCCCEEEEECC
T ss_conf --------------4898799959998752---------415-7---55685179997-898679999589979998866
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCEEEEEECCCCCC
Q ss_conf 34469898522222530103688752453015888998841999813998999993991999977985099994299998
Q 001535 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (1058)
Q Consensus 795 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~ 874 (1058)
... ....+.++++++++.+++++.++.+.+|+..+++.+..+. +...
T Consensus 402 ~~~--------------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 448 (615)
T 1pgu_A 402 KHE--------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP 448 (615)
T ss_dssp EEE--------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred CCC--------------------------------CCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECC-CCCC
T ss_conf 676--------------------------------3678469998289878999679826999446786655515-6787
Q ss_pred EEEEEEECCCCCEEEEEEC-CCCEEEEECCCCEEE-EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEECE
Q ss_conf 3599992699969999979-997999984376433-67325678846999818999899993999599998788840102
Q 001535 875 STFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952 (1058)
Q Consensus 875 i~~l~~s~~~~~~lasg~~-dg~i~iwd~~~~~~~-~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~ 952 (1058)
+.+++|+ ++++++++. |+.|++|++.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.+++....
T Consensus 449 ~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 525 (615)
T 1pgu_A 449 GSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS 525 (615)
T ss_dssp EEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred CEEEEEC---CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCEEE
T ss_conf 2077883---8889996568986999988885435333677657507999989999899817998599865777762467
Q ss_pred EEEECCCCCCCCCCEEEEECC----------CCCEEEEE-ECCEEEEEECCCC-EEEEEECCCCCCCCCEEEEEECCCCC
Q ss_conf 898327998999940899857----------99899999-7883999987788-03334112788988979999901898
Q 001535 953 VTIHIPAGKTPTGDTRVQFNA----------DQVRMLVV-HETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQ 1020 (1058)
Q Consensus 953 ~~~~~~~~~~~~~v~~i~fs~----------d~~~l~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~ 1020 (1058)
..+.+...+.+++|+| ++++|+++ .|+.|++|++.++ ..+..+..| ...|.+++|+|+++
T Consensus 526 -----~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 526 -----RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST 597 (615)
T ss_dssp -----CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE
T ss_pred -----EECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHHHCC---CCCEEEEEECCCCC
T ss_conf -----6047887146999768323453324688889998179719999778885403113359---43058999738997
Q ss_pred EEEEEECCCCEEEEECCCC
Q ss_conf 9999968993999968998
Q 001535 1021 LVFATFCDGNIGVFDADTL 1039 (1058)
Q Consensus 1021 ~l~t~~~dg~i~iw~~~~~ 1039 (1058)
|++++.||.|++|++.++
T Consensus 598 -l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 598 -LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp -EEEEETTSCEEEEEEC--
T ss_pred -EEEECCCCEEEEEEEECC
T ss_conf -288459963999960159
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=512.75 Aligned_cols=600 Identities=10% Similarity=0.091 Sum_probs=407.9
Q ss_pred CEEEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 33895238983899996058980899973321399997368970134561121145457653222145798566999987
Q 001535 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1058)
Q Consensus 336 ~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (1058)
......+|.+.|+|++|+|+|+ +||+|+.||+|+||+..+.+... ...|...|.+++|+
T Consensus 9 ~~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fs 67 (902)
T 2oaj_A 9 AETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFV 67 (902)
T ss_dssp EEEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEE
T ss_pred CCCCCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEE--------------------ECCCCCCEEEEEEC
T ss_conf 1202168899848999979999-89999297989999689947999--------------------86899977999990
Q ss_pred CCCCEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEE-------
Q ss_conf 899989999689949999802898530003420455676799962699806999981899299992-679734-------
Q 001535 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL------- 487 (1058)
Q Consensus 416 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd-~~~~~~------- 487 (1058)
| |++|++++.|++|++||+.+++.+. .+. |...|++++|+|++. ++++|+.||.|++|| .++...
T Consensus 68 p-g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~ 140 (902)
T 2oaj_A 68 K-GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNL 140 (902)
T ss_dssp T-TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred C-CCEEEEEECCCEEEEEECCCCCEEE---EEC-CCCCEEEEEECCCCC--EEEEECCCCCEEEEECCCCCCCCCEECCC
T ss_conf 8-9889999895959999899996899---974-899879999879999--89999499929999999996265030432
Q ss_pred ----EEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECC------------------CCCEEEEE
Q ss_conf ----88415457856985023699509999840795999966899814776279------------------98179999
Q 001535 488 ----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTML 545 (1058)
Q Consensus 488 ----~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~i~ 545 (1058)
..+.+|.++|.+++|+|. ++..+++++.|+.| +||++.......+..+ ...|.+++
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEECCC-CCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 1000254457897389997669-99989999189849-998778965799833557767776544332345677768999
Q ss_pred ECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEE--EE---CC------------CCCCEEEEEECC----CC-CEEEEE
Q ss_conf 8459998999730679995499993898813556--50---66------------685202999917----99-999999
Q 001535 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFDT----TQ-NHFLAV 603 (1058)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~i~~~~~~~----~~-~~l~~~ 603 (1058)
|+|+|.++++++. |+.|++||+.+++.+.. +. .| ....+..++|++ ++ ..++++
T Consensus 219 fspdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 219 YHPNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp ECTTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred ECCCCCEEEEEEC----CCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEC
T ss_conf 8599999999989----993999987899688888501234578777678888555677457999734999887899968
Q ss_pred ECC-----CCEEEEECC------------------CCCEEEEECCCCCCCCCCEEEEEC----------CCCEEEEEECC
Q ss_conf 599-----819999789------------------982236850689999976278508----------99899999889
Q 001535 604 GED-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTAD 650 (1058)
Q Consensus 604 ~~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~i~~s~----------~~~~l~~~~~d 650 (1058)
+.+ ..+.+|++. +.+....+.. .+...+..+.+.+ +...+++++.|
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEC-CCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCC
T ss_conf 877778885289995478987555425565466417452278741-8999547999977889886778785069999179
Q ss_pred CCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 949999856796100112498-7434468642024310355310258998610002588988762148888877889883
Q 001535 651 NGFKILANAIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (1058)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1058)
+.+++|++.++.........+ ....+...+.++++++....+..+...
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~------------------------------- 422 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALS------------------------------- 422 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHH-------------------------------
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHH-------------------------------
T ss_conf 8489997899985565556898522358972489999749999988886-------------------------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 13788899875301356418962799716887885637999983376528983126706886520344698985222225
Q 001535 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1058)
Q Consensus 730 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~ 809 (1058)
.++ ...| .+ .+|...+..++|+|+++.+++++.|++|++||+..+....
T Consensus 423 ----~~~-~~~~--------------~l---~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~--------- 471 (902)
T 2oaj_A 423 ----AAQ-NKDY--------------LL---KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD--------- 471 (902)
T ss_dssp ----TTB-CCCC--------------SC---CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------
T ss_pred ----CCC-CCCC--------------CC---CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCC---------
T ss_conf ----046-9997--------------54---5785778753336667589996589838999787764567---------
Q ss_pred CEEECCCCCCEEEEECC---CCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEECCCC-----------------------
Q ss_conf 30103688752453015---888998841999813998999993-991999977985-----------------------
Q 001535 810 PQHWLPSSGLLMANDVA---GVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF----------------------- 862 (1058)
Q Consensus 810 ~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~s~dg~~la~~~-dg~i~iwd~~~~----------------------- 862 (1058)
.......+. +..|...|.+++|+||+++||+++ ||+|++|++.++
T Consensus 472 --------~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 472 --------NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp --------TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred --------CCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf --------736775015413778887646999638999699994585799999248655575455778665113455134
Q ss_pred ----------------------EEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE-----EEC-CC
Q ss_conf ----------------------09999429999835999926999699999799979999843764336-----732-56
Q 001535 863 ----------------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-----KLK-GH 914 (1058)
Q Consensus 863 ----------------------~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~-----~~~-~h 914 (1058)
+++..+.+|.+.|++++||| || +||+|+.|++|++||+.+...+. .+. +|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC-CC-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCC
T ss_conf 679654322423689887776014699986888677999648-76-8999958976999988898399970246726466
Q ss_pred CCCEEEEEEC-----CCC---CEEEEEECCCCEEEEEC---CCCCEECEEEEECCCCCCCCCCEEEE-EC----------
Q ss_conf 7884699981-----899---98999939995999987---88840102898327998999940899-85----------
Q 001535 915 QKRITGLAFS-----TSL---NILVSSGADAQLCVWSI---DTWEKRKSVTIHIPAGKTPTGDTRVQ-FN---------- 972 (1058)
Q Consensus 915 ~~~V~~l~~s-----~d~---~~l~s~s~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~i~-fs---------- 972 (1058)
.+.|++++|+ ||| .+|++++.|++|++||+ .+|++...+..+....+. +.+..+. |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~a~ 700 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK-GPIHKIDAFSKETKSSCLAT 700 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS-CCCCEEEEEETTTCCBCBCB
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCC-CCEEEEEEEECCCCCCCCCC
T ss_conf 66139999999841789876338999956873999999558998689996672440788-96479985866879736688
Q ss_pred ------------CCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCCCCEEEE---E------ECCCCCEEEEEECCCCE
Q ss_conf ------------79989999978839999877880333411278898897999---9------90189899999689939
Q 001535 973 ------------ADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCA---V------YSCNSQLVFATFCDGNI 1031 (1058)
Q Consensus 973 ------------~d~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~l---~------~s~dg~~l~t~~~dg~i 1031 (1058)
+++.. +++.+..+++|++.++++......+ ...+.++ . |++++..|++++.||+|
T Consensus 701 ~~~~~~l~~~~~~~~~~-l~~~~~~ir~~~~~~~k~~~k~~~~---~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i 776 (902)
T 2oaj_A 701 IPKMQNLSKGLCIPGIV-LITGFDDIRLITLGKSKSTHKGFKY---PLAATGLSYISTVEKNNDRKNLTVIITLEINGHL 776 (902)
T ss_dssp HHHHHGGGGTCCCCEEE-EEECSSEEEEECTTCCCEEEEECSS---CEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEE
T ss_pred HHHHHCCCCCCCCCEEE-EEEECCCEEEEECCCCCCEEEECCC---CEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCE
T ss_conf 78972557788777399-9993540599967533512367256---2014477788701355544673699999279959
Q ss_pred EEEECCCCEEEEEECC
Q ss_conf 9996899829899858
Q 001535 1032 GVFDADTLRLRCYIAP 1047 (1058)
Q Consensus 1032 ~iw~~~~~~~~~~~~~ 1047 (1058)
++|++.+++.+..+..
T Consensus 777 ~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 777 RVFTIPDFKEQMSEHI 792 (902)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred EEEECCCHHHHHHCCC
T ss_conf 9997856477841658
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=468.16 Aligned_cols=534 Identities=15% Similarity=0.211 Sum_probs=435.0
Q ss_pred CCCCCCC--C-CCEEEEECCCCC-EEEEEEEC--CCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 3456898--8-633895238983-89999605--8980899973321399997368970134561121145457653222
Q 001535 327 TWSLDDL--P-RTVAVSLHQGST-VISMDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1058)
Q Consensus 327 ~~~~~~~--~-~~~~~~~~h~~~-V~~v~~sp--~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1058)
+|++... + .......+|.+. |++++|+| +|+ +|++|+.||.|++||+.+++....... ....
T Consensus 43 v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~-----------~~~~ 110 (615)
T 1pgu_A 43 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEV-----------NVKS 110 (615)
T ss_dssp EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEE-----------EEEE
T ss_pred EEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCC-EEEEECCCCEEEEEECCCCCCCCCCCC-----------CCCC
T ss_conf 9977788776514318805788449999979678998-899964898799976888765544554-----------2000
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECC----CEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 145798566999987899989999689----9499998028985300034204556767999626998069999818992
Q 001535 401 IFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1058)
Q Consensus 401 ~~~~h~~~V~~i~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~ 476 (1058)
.+.+|...|.+++|+|++++|++++.+ +.|.+|| .++... .+.+|...|.+++|+|++.. .+++++.|+.
T Consensus 111 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~ 184 (615)
T 1pgu_A 111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGS 184 (615)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTE
T ss_pred HHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCE---EEECCCCCEEEEEECCCCCC-EEEEEECCCC
T ss_conf 11125663799999079998999316877755799997--898103---13067743889998878996-8999957995
Q ss_pred EEEEE-CCCCEEEEEECCCC---CEEEEEECCCCC-CEEEEEEEECCEEEEEECCCCCCEEEE-E---CCCCCEEEEEEC
Q ss_conf 99992-67973488415457---856985023699-509999840795999966899814776-2---799817999984
Q 001535 477 IKVWE-LSGRKLFNFEGHEA---PVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGSRVDY-D---APGHWCTTMLYS 547 (1058)
Q Consensus 477 i~iwd-~~~~~~~~~~~h~~---~v~~i~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~i~~i~~s 547 (1058)
|++|| .+++.+..+.+|.. .|.+++|++ + +.++++++.|+.|++||+.++.....+ . .+...+.++.|+
T Consensus 185 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp EEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred EEEEECCCCCEEEEECCCCCCCCEEEEEEECC--CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC
T ss_conf 99996999610132025677774289999789--7788899986898089998999978589525444567755899981
Q ss_pred CCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCC---CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf 5999899973067999549999389881355650666---8520299991799999999599819999789982236850
Q 001535 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1058)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1058)
++.++++++. ++.+++||+.+++.+..+..+. ...+..+.|. ++..+++++.|+.|++|++.+++.+..+.
T Consensus 263 -~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 263 -DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp -SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred -CCCEEEEECC----CCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf -8997999848----99489997888927878847877545714699918-99769999789978999888992889994
Q ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 68999997627850899899999889949999856796100112498743446864202431035531025899861000
Q 001535 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (1058)
Q Consensus 625 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~ 704 (1058)
. +...|.+++| |+ +++++.||.|++|++. .+. ..+...+.++++ +++
T Consensus 337 ~--~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~-------~~~~~~v~~~~~-~~~--------------- 383 (615)
T 1pgu_A 337 G--HNKGITALTV-NP---LISGSYDGRIMEWSSS----SMH-------QDHSNLIVSLDN-SKA--------------- 383 (615)
T ss_dssp C--CSSCEEEEET-TT---TEEEETTSCEEETTTT----EEE-------CCCCSCEEEEEC-CST---------------
T ss_pred C--CCCCEEEEEE-CC---CEEECCCCEEEEEECH----HHC-------CCCCCCEEEEEE-CCC---------------
T ss_conf 7--7787899995-67---4898799959998752----415-------755685179997-898---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 25889887621488888778898831378889987530135641896279971688788563799998337652898312
Q 001535 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (1058)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~ 784 (1058)
..+++++.|+.+++|++...... ..+..++++|++..++++ .
T Consensus 384 ----------------------~~l~~~~~d~~i~~~~~~~~~~~---------------~~~~~~~~s~~~~~~~~~-~ 425 (615)
T 1pgu_A 384 ----------------------QEYSSISWDDTLKVNGITKHEFG---------------SQPKVASANNDGFTAVLT-N 425 (615)
T ss_dssp ----------------------TCCEEEETTTEEEETTEEEEECS---------------SCEEEEEECSSSEEEEEE-T
T ss_pred ----------------------CEEEEEECCCCEEEEECCCCCCC---------------CCCEEEEECCCCCEEEEE-C
T ss_conf ----------------------67999958997999886667636---------------784699982898789996-7
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEE--CCCEEEEECCCC
Q ss_conf 670688652034469898522222530103688752453015888998841999813998999993--991999977985
Q 001535 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTF 862 (1058)
Q Consensus 785 dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~--dg~i~iwd~~~~ 862 (1058)
++.+.+|++. ++..+... .+...+.+++|+ ++++++++ ++.|++||+.++
T Consensus 426 ~~~~~~~~~~----------------------~~~~~~~~----~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 426 DDDLLILQSF----------------------TGDIIKSV----RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp TSEEEEEETT----------------------TCCEEEEE----ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE
T ss_pred CCCEEEEECC----------------------CCCEEEEC----CCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCC
T ss_conf 9826999446----------------------78665551----567872077883--8889996568986999988885
Q ss_pred EEE-EEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECC-CCCCEEEEEECC----------CCCEE
Q ss_conf 099-994299998359999269996999997999799998437643367325-678846999818----------99989
Q 001535 863 KVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG-HQKRITGLAFST----------SLNIL 930 (1058)
Q Consensus 863 ~~~-~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-h~~~V~~l~~s~----------d~~~l 930 (1058)
+.. ..+..|...|++++|+| ++++|++++.||.|++|++.+++.+..+.+ |...|++++|+| ++++|
T Consensus 478 ~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l 556 (615)
T 1pgu_A 478 EVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 556 (615)
T ss_dssp EEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred CCCCCCCCCCCCCEEEEEECC-CCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEE
T ss_conf 435333677657507999989-9998998179985998657777624676047887146999768323453324688889
Q ss_pred EEEECCCCEEEEECCCC-CEECEEEEECCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEECCC
Q ss_conf 99939995999987888-4010289832799899994089985799899999-788399998778
Q 001535 931 VSSGADAQLCVWSIDTW-EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASK 993 (1058)
Q Consensus 931 ~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~i~fs~d~~~l~~~-~d~~i~i~d~~~ 993 (1058)
++++.|+.|++||+.++ +.. ....+|. ..+.+++|+|++. |+++ .|+.|++|++..
T Consensus 557 ~~~~~dg~i~iw~~~~~~~~~-----~~~~~h~-~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 557 ATGSLDTNIFIYSVKRPMKII-----KALNAHK-DGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEETTSCEEEEESSCTTCCE-----EETTSST-TCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEECCCCCEEEEECCCCCEEC-----HHHHCCC-CCEEEEEECCCCC-EEEECCCCEEEEEEEEC
T ss_conf 998179719999778885403-----1133594-3058999738997-28845996399996015
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=458.81 Aligned_cols=614 Identities=10% Similarity=0.050 Sum_probs=401.6
Q ss_pred CCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 34568988633895238983899996058980899973321399997368970134561121145457653222145798
Q 001535 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1058)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1058)
+|+... ......+.|...|++++|+| |+ +|++++.|++|++||+.+++.+.. +. |.
T Consensus 43 lw~~~~--~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~-------------------~~-~~ 98 (902)
T 2oaj_A 43 IYGQQQ--VEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT-------------------VF-VP 98 (902)
T ss_dssp EECSTT--CEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE-------------------EE-CS
T ss_pred EEECCC--CEEEEECCCCCCEEEEEECC-CC-EEEEEECCCEEEEEECCCCCEEEE-------------------EC-CC
T ss_conf 996899--47999868999779999908-98-899998959599998999968999-------------------74-89
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEE-E-------EEECCCCCCEEEEEEECCCCEEEEEEEECCCCEE
Q ss_conf 5669999878999899996899499998028985300-0-------3420455676799962699806999981899299
Q 001535 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-H-------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1058)
Q Consensus 407 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~-~-------~~l~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~ 478 (1058)
+.|++++|+|++++|++|+.||.|++||+.++..... . ..+.+|.+.|++++|+|++.. .+++|+.|+.|
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-
T ss_pred CCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCC-EEEEEECCCCE-
T ss_conf 9879999879999899994999299999999962650304321000254457897389997669999-89999189849-
Q ss_pred EEE-CCCCEEEEEECC------------------CCCEEEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEE----
Q ss_conf 992-679734884154------------------578569850236995099998407959999668998147762----
Q 001535 479 VWE-LSGRKLFNFEGH------------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---- 535 (1058)
Q Consensus 479 iwd-~~~~~~~~~~~h------------------~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 535 (1058)
+|| .+++++..+.+| ...|.+++|+| ++.+|++++.|+.|++||++++.......
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCEEEEEEECCC
T ss_conf 998778965799833557767776544332345677768999859--999999998999399998789968888850123
Q ss_pred -C-------------CCCCEEEEEECC----CC-CEEEEEECCCC-CCCEEEEEECC------------------CCCEE
Q ss_conf -7-------------998179999845----99-98999730679-99549999389------------------88135
Q 001535 536 -A-------------PGHWCTTMLYSA----DG-SRLFSCGTSKD-GDSFLVEWNES------------------EGTIK 577 (1058)
Q Consensus 536 -~-------------~~~~i~~i~~s~----~~-~~l~~~~~~~~-~~~~i~iwd~~------------------~~~~~ 577 (1058)
. +...|.+++|++ ++ ..+++++.+.+ ....+.+|+.. +.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCE
T ss_conf 45787776788885556774579997349998878999688777788852899954789875554255654664174522
Q ss_pred EEEECCCCCCEEEEEECC----------CCCEEEEEECCCCEEEEECCCCCEEEE-----ECCCCCCCCCCEEEEECCCC
Q ss_conf 565066685202999917----------999999995998199997899822368-----50689999976278508998
Q 001535 578 RTYAGFRKKSNGVVQFDT----------TQNHFLAVGEDSQIKFWDMDNVNILTS-----TDAEGGLPNLPRLRFSKEGN 642 (1058)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~v~~i~~s~~~~ 642 (1058)
+.+.......+..+.+.+ +...+++++.|+.|++|++.++..... .....+...|+++++++..
T Consensus 335 ~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~- 413 (902)
T 2oaj_A 335 KIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVP- 413 (902)
T ss_dssp EEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEE-
T ss_pred EEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-
T ss_conf 7874189995479999778898867787850699991798489997899985565556898522358972489999749-
Q ss_pred EEEEEECCCCEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 9999988994999985679--61001124987434468642024310355310258998610002588988762148888
Q 001535 643 LLAVTTADNGFKILANAIG--LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1058)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1058)
..+|+.... ......+.+ +...+..++|+|+++
T Consensus 414 ----------~~~w~~~~~~~~~~~~~l~G-----~~~~v~sv~~spdg~------------------------------ 448 (902)
T 2oaj_A 414 ----------NKLWLGALSAAQNKDYLLKG-----GVRTKRQKLPAEYGT------------------------------ 448 (902)
T ss_dssp ----------HHHHHHHHHTTBCCCCSCCC-----SBCCCCCCCCCSEEE------------------------------
T ss_pred ----------HHHHHHHHHCCCCCCCCCCC-----CCCCCCCCCCCCCCC------------------------------
T ss_conf ----------99998888604699975457-----857787533366675------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCC-CEEEEEEC--CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEECCC
Q ss_conf 877889883137888998753013564189-62799716--887885637999983376528983126706886520344
Q 001535 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSG-QCRLVTMP--ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (1058)
Q Consensus 721 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~--~~~~~~~~i~~l~~s~d~~~l~~~~~dg~i~iw~~~~~~ 797 (1058)
.+++++.|++|++|++....... ......+. ...+|...|.+++|+||++.|++++.||+|++|++....
T Consensus 449 -------~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 449 -------AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp -------EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred -------EEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCC
T ss_conf -------8999658983899978776456773677501541377888764699963899969999458579999924865
Q ss_pred CCC--------CCCC------CCCCCCEE--------ECCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEE-CCCE
Q ss_conf 698--------9852------22225301--------03688752453015888998841999813998999993-9919
Q 001535 798 QNP--------SGKA------TASAVPQH--------WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (1058)
Q Consensus 798 ~~~--------~g~~------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~~-dg~i 854 (1058)
... .... .....-.. .....+......+.+ |...|++++||||| +||+++ |++|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CCCCEEEEEECCCC-EEEEEECCCCE
T ss_conf 5575455778665113455134679654322423689887776014699986--88867799964876-89999589769
Q ss_pred EEEECCCCEEEE--E---EC-CCCCCEEEEEEE-----CCCC---CEEEEEECCCCEEEEEC---CCCEEEEEECCCC--
Q ss_conf 999779850999--9---42-999983599992-----6999---69999979997999984---3764336732567--
Q 001535 855 SLFNMMTFKVMT--T---FM-SPPPASTFLAFH-----PQDN---NIIAIGTEDSTIHIYNV---RVDEVKSKLKGHQ-- 915 (1058)
Q Consensus 855 ~iwd~~~~~~~~--~---~~-~~~~~i~~l~~s-----~~~~---~~lasg~~dg~i~iwd~---~~~~~~~~~~~h~-- 915 (1058)
++||+.+...+. . +. +|...|++++|+ | |+ ++|++|+.|++|++|++ .+++....+.+|.
T Consensus 599 ~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~ 677 (902)
T 2oaj_A 599 MLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNV 677 (902)
T ss_dssp EEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEEC
T ss_pred EEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCC-CCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEEC
T ss_conf 999888983999702467264666613999999984178-9876338999956873999999558998689996672440
Q ss_pred ---CCEEEEE-EC----------------------CCCCEEEEEECCCCEEEEECCCCCEECEEEEECCCCCCCCCCEEE
Q ss_conf ---8846999-81----------------------899989999399959999878884010289832799899994089
Q 001535 916 ---KRITGLA-FS----------------------TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 969 (1058)
Q Consensus 916 ---~~V~~l~-~s----------------------~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~i 969 (1058)
++|..++ |+ +++..|++ + +..+++|++.++++.... ..+. ..+.++
T Consensus 678 ~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~-~~~ir~~~~~~~k~~~k~-----~~~~-~~~~~v 749 (902)
T 2oaj_A 678 TSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-G-FDDIRLITLGKSKSTHKG-----FKYP-LAATGL 749 (902)
T ss_dssp CSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-C-SSEEEEECTTCCCEEEEE-----CSSC-EEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEE-E-CCCEEEEECCCCCCEEEE-----CCCC-EEEEEE
T ss_conf 7889647998586687973668878972557788777399999-3-540599967533512367-----2562-014477
Q ss_pred ---E------ECCCCCEEEEE-ECCEEEEEECCCCEEEEEECCCCCC-CCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf ---9------85799899999-7883999987788033341127889-8897999990189899999689939999
Q 001535 970 ---Q------FNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDAL-SAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1058)
Q Consensus 970 ---~------fs~d~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~l~t~~~dg~i~iw 1034 (1058)
. |++++..|++. .++.+++|++.+++++..+...... ...+....|+.+|..++-.+ ..++.+.
T Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~e~~~~ 824 (902)
T 2oaj_A 750 SYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRVS-EFQASLF 824 (902)
T ss_dssp EEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCHHHHTTCEECTTSCEEEECS-SSEEEEE
T ss_pred EEEEECCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEC-HHHEEEE
T ss_conf 78870135554467369999927995999978564778416588602446432028968988999827-0264899
Done!