Query 001536
Match_columns 1058
No_of_seqs 434 out of 2821
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 03:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0250 DNA repair protein RAD 100.0 3E-102 6E-107 839.3 113.9 1035 11-1058 31-1074(1074)
2 COG1196 Smc Chromosome segrega 100.0 8.5E-82 1.8E-86 760.5 110.0 998 20-1055 1-1146(1163)
3 KOG0979 Structural maintenance 100.0 2.3E-73 5E-78 604.7 95.4 966 15-1052 15-1041(1072)
4 KOG0996 Structural maintenance 100.0 1.6E-70 3.5E-75 590.2 99.2 1014 15-1054 79-1274(1293)
5 KOG0933 Structural maintenance 100.0 2.2E-68 4.8E-73 563.1 91.7 987 20-1048 1-1154(1174)
6 KOG0964 Structural maintenance 100.0 8.9E-68 1.9E-72 555.5 95.1 988 20-1046 1-1167(1200)
7 KOG0018 Structural maintenance 100.0 1.2E-67 2.6E-72 564.3 97.2 983 19-1053 1-1127(1141)
8 TIGR02169 SMC_prok_A chromosom 100.0 2.1E-65 4.6E-70 645.7 114.2 992 21-1052 1-1151(1164)
9 TIGR02168 SMC_prok_B chromosom 100.0 6.2E-58 1.4E-62 581.4 116.4 1000 21-1053 1-1167(1179)
10 PRK02224 chromosome segregatio 100.0 8.2E-47 1.8E-51 454.2 101.2 156 20-191 1-164 (880)
11 PRK03918 chromosome segregatio 100.0 1.9E-43 4E-48 427.3 104.4 181 20-214 1-183 (880)
12 PRK01156 chromosome segregatio 100.0 1.4E-41 3E-46 407.7 104.0 175 20-210 1-183 (895)
13 COG0419 SbcC ATPase involved i 100.0 1.5E-40 3.3E-45 394.0 98.0 186 20-217 1-195 (908)
14 PRK10246 exonuclease subunit S 100.0 2.3E-33 4.9E-38 334.6 104.8 187 20-217 1-208 (1047)
15 TIGR00606 rad50 rad50. This fa 100.0 2.5E-34 5.3E-39 353.3 98.9 154 21-188 2-181 (1311)
16 PRK04863 mukB cell division pr 100.0 1.2E-32 2.6E-37 327.6 104.8 102 942-1044 1335-1444(1486)
17 TIGR00618 sbcc exonuclease Sbc 100.0 4.5E-32 9.8E-37 327.4 99.9 188 20-218 1-205 (1042)
18 COG4717 Uncharacterized conser 100.0 1.8E-32 3.9E-37 288.2 75.4 169 872-1053 811-984 (984)
19 PF13514 AAA_27: AAA domain 100.0 1.3E-27 2.9E-32 290.0 88.9 127 919-1053 977-1111(1111)
20 TIGR02680 conserved hypothetic 100.0 1.8E-24 3.9E-29 263.4 107.4 84 970-1057 1244-1335(1353)
21 COG4913 Uncharacterized protei 100.0 8E-25 1.7E-29 224.8 84.5 93 19-120 14-134 (1104)
22 KOG0962 DNA repair protein RAD 100.0 1.7E-24 3.7E-29 243.2 83.0 168 19-198 1-193 (1294)
23 TIGR03185 DNA_S_dndD DNA sulfu 100.0 3.6E-27 7.8E-32 269.1 62.4 145 20-171 1-163 (650)
24 PRK10869 recombination and rep 100.0 1E-26 2.2E-31 255.7 50.0 196 848-1052 297-507 (553)
25 COG0497 RecN ATPase involved i 100.0 1.1E-23 2.4E-28 219.8 51.8 202 846-1055 296-511 (557)
26 PHA02562 46 endonuclease subun 100.0 5.4E-25 1.2E-29 252.3 43.8 198 19-233 1-207 (562)
27 PF02463 SMC_N: RecF/RecN/SMC 99.9 4.6E-26 9.9E-31 225.4 20.0 126 21-154 1-134 (220)
28 PF12128 DUF3584: Protein of u 99.9 2E-15 4.4E-20 184.3 98.2 61 975-1040 1122-1187(1201)
29 TIGR00634 recN DNA repair prot 99.9 3.2E-21 6.8E-26 216.0 40.3 191 21-234 1-202 (563)
30 COG3096 MukB Uncharacterized p 99.9 1.1E-14 2.3E-19 151.4 79.6 92 946-1043 1338-1442(1480)
31 COG1196 Smc Chromosome segrega 99.9 3.6E-16 7.8E-21 191.0 75.7 65 871-941 976-1040(1163)
32 KOG0250 DNA repair protein RAD 99.9 4E-16 8.7E-21 172.0 63.4 490 186-695 214-724 (1074)
33 KOG0996 Structural maintenance 99.9 1.2E-14 2.5E-19 160.3 72.7 112 848-969 1079-1194(1293)
34 TIGR02169 SMC_prok_A chromosom 99.9 9.2E-15 2E-19 185.8 79.5 139 781-931 893-1039(1164)
35 KOG0933 Structural maintenance 99.8 2.8E-13 6E-18 146.8 64.2 291 167-465 215-529 (1174)
36 TIGR02168 SMC_prok_B chromosom 99.8 1.1E-12 2.3E-17 167.9 79.8 169 196-364 168-336 (1179)
37 cd03273 ABC_SMC2_euk Eukaryoti 99.8 3.4E-18 7.4E-23 171.9 17.4 148 20-172 1-156 (251)
38 TIGR00634 recN DNA repair prot 99.8 1.6E-15 3.5E-20 170.3 36.9 198 846-1052 300-517 (563)
39 cd03275 ABC_SMC1_euk Eukaryoti 99.8 2.8E-17 6.1E-22 164.3 17.8 139 22-175 1-146 (247)
40 PRK02224 chromosome segregatio 99.8 8.6E-11 1.9E-15 142.8 77.3 127 920-1054 736-870 (880)
41 PRK14079 recF recombination pr 99.7 2.9E-16 6.3E-21 163.9 23.3 121 20-168 1-121 (349)
42 PHA02562 46 endonuclease subun 99.7 2.5E-14 5.4E-19 164.5 39.2 124 919-1052 421-551 (562)
43 PRK00064 recF recombination pr 99.7 4.8E-16 1E-20 163.4 22.8 111 20-147 1-112 (361)
44 cd03242 ABC_RecF RecF is a rec 99.7 3.2E-16 6.9E-21 158.7 18.8 100 22-137 1-101 (270)
45 cd03241 ABC_RecN RecN ATPase i 99.7 1.3E-16 2.9E-21 162.0 13.1 113 22-147 1-120 (276)
46 PF13555 AAA_29: P-loop contai 99.7 5.1E-17 1.1E-21 115.4 6.0 49 22-70 1-51 (62)
47 cd03277 ABC_SMC5_euk Eukaryoti 99.7 1.7E-16 3.7E-21 152.9 11.7 80 20-99 1-80 (213)
48 KOG0964 Structural maintenance 99.7 1.2E-08 2.6E-13 111.1 69.7 88 199-286 169-256 (1200)
49 KOG0161 Myosin class II heavy 99.6 2.3E-08 5E-13 121.7 75.2 66 639-704 1245-1310(1930)
50 KOG0018 Structural maintenance 99.6 2.3E-08 4.9E-13 110.9 67.7 186 770-963 849-1045(1141)
51 KOG0161 Myosin class II heavy 99.6 2.2E-08 4.8E-13 121.8 73.2 63 643-705 1277-1339(1930)
52 cd03272 ABC_SMC3_euk Eukaryoti 99.6 5.4E-15 1.2E-19 149.1 14.7 142 22-172 1-148 (243)
53 cd03239 ABC_SMC_head The struc 99.6 1E-15 2.3E-20 142.6 8.5 78 22-99 1-82 (178)
54 TIGR00611 recf recF protein. A 99.6 9.7E-14 2.1E-18 145.3 24.0 78 20-100 1-78 (365)
55 COG1195 RecF Recombinational D 99.6 9.6E-14 2.1E-18 139.1 20.3 122 20-167 1-123 (363)
56 cd03276 ABC_SMC6_euk Eukaryoti 99.6 5E-15 1.1E-19 141.3 9.2 79 22-100 1-79 (198)
57 KOG0979 Structural maintenance 99.6 8.9E-08 1.9E-12 105.7 64.3 177 186-362 181-357 (1072)
58 PF13476 AAA_23: AAA domain; P 99.5 4.5E-14 9.7E-19 139.3 11.1 49 24-72 1-49 (202)
59 cd03279 ABC_sbcCD SbcCD and ot 99.5 1.6E-13 3.5E-18 134.0 10.0 90 20-119 1-95 (213)
60 PRK03918 chromosome segregatio 99.4 2.8E-06 6E-11 104.1 73.1 92 951-1049 771-864 (880)
61 cd03240 ABC_Rad50 The catalyti 99.4 6.5E-13 1.4E-17 127.7 11.0 90 22-120 1-92 (204)
62 cd03278 ABC_SMC_barmotin Barmo 99.3 9E-12 1.9E-16 118.9 8.3 78 22-99 1-85 (197)
63 cd03274 ABC_SMC4_euk Eukaryoti 99.2 2.7E-11 5.8E-16 117.1 8.4 78 20-98 1-85 (212)
64 PRK04863 mukB cell division pr 99.2 5.3E-05 1.1E-09 93.3 72.8 52 19-70 4-55 (1486)
65 PF12128 DUF3584: Protein of u 99.2 8E-05 1.7E-09 92.6 72.3 40 37-77 13-52 (1201)
66 TIGR00606 rad50 rad50. This fa 99.1 0.00014 3E-09 91.8 79.2 72 968-1039 1194-1271(1311)
67 PF11398 DUF2813: Protein of u 99.1 2.9E-09 6.3E-14 109.2 17.2 77 20-99 1-83 (373)
68 PF13166 AAA_13: AAA domain 99.1 1.8E-07 3.9E-12 111.3 34.5 68 971-1038 498-571 (712)
69 cd03276 ABC_SMC6_euk Eukaryoti 99.1 4E-10 8.6E-15 107.8 8.9 89 969-1057 105-194 (198)
70 KOG4674 Uncharacterized conser 99.0 0.00028 6E-09 85.6 70.3 19 846-864 1306-1324(1822)
71 COG3950 Predicted ATP-binding 99.0 1.5E-10 3.2E-15 111.4 3.1 50 20-69 1-51 (440)
72 PRK01156 chromosome segregatio 99.0 0.0004 8.7E-09 85.0 75.8 86 968-1053 796-885 (895)
73 COG5293 Predicted ATPase [Gene 98.9 2.1E-05 4.6E-10 78.9 35.3 51 20-72 4-66 (591)
74 cd03277 ABC_SMC5_euk Eukaryoti 98.9 8.2E-09 1.8E-13 99.8 9.5 87 970-1056 123-210 (213)
75 PF00261 Tropomyosin: Tropomyo 98.9 4.4E-06 9.5E-11 82.2 28.6 137 674-816 22-158 (237)
76 PF10174 Cast: RIM-binding pro 98.9 0.0005 1.1E-08 78.3 65.4 66 376-441 241-306 (775)
77 PF01576 Myosin_tail_1: Myosin 98.8 5E-10 1.1E-14 130.9 0.0 43 636-678 550-592 (859)
78 cd03227 ABC_Class2 ABC-type Cl 98.8 3.8E-09 8.2E-14 97.9 5.6 68 25-96 2-71 (162)
79 cd03278 ABC_SMC_barmotin Barmo 98.8 7.4E-09 1.6E-13 99.0 5.9 86 969-1056 109-194 (197)
80 PF00261 Tropomyosin: Tropomyo 98.8 3.8E-05 8.2E-10 75.7 30.9 34 194-227 9-42 (237)
81 cd03239 ABC_SMC_head The struc 98.7 1.7E-08 3.6E-13 94.4 6.6 78 974-1052 95-172 (178)
82 COG3840 ThiQ ABC-type thiamine 98.7 1.4E-08 2.9E-13 88.7 5.3 73 971-1047 127-199 (231)
83 PF04310 MukB: MukB N-terminal 98.7 1.5E-08 3.3E-13 89.9 5.5 50 18-67 3-52 (227)
84 PF13166 AAA_13: AAA domain 98.7 0.00034 7.4E-09 83.5 41.7 42 29-70 1-44 (712)
85 cd03240 ABC_Rad50 The catalyti 98.6 5.5E-08 1.2E-12 93.8 7.4 83 970-1052 112-197 (204)
86 COG1122 CbiO ABC-type cobalt t 98.6 3.1E-08 6.7E-13 95.8 5.4 78 969-1050 134-211 (235)
87 COG1136 SalX ABC-type antimicr 98.6 3.6E-08 7.8E-13 92.9 5.5 69 970-1042 139-207 (226)
88 PRK04778 septation ring format 98.6 0.0023 5.1E-08 72.7 52.9 78 849-931 450-527 (569)
89 PF01576 Myosin_tail_1: Myosin 98.6 5.7E-09 1.2E-13 122.2 0.0 64 638-701 580-643 (859)
90 cd03275 ABC_SMC1_euk Eukaryoti 98.6 3.5E-08 7.7E-13 99.0 5.1 85 966-1052 148-233 (247)
91 COG1121 ZnuC ABC-type Mn/Zn tr 98.6 8.1E-08 1.7E-12 92.1 6.3 74 970-1048 136-209 (254)
92 COG3593 Predicted ATP-dependen 98.6 5.4E-08 1.2E-12 104.8 4.9 50 20-69 1-50 (581)
93 PF07888 CALCOCO1: Calcium bin 98.5 0.0012 2.6E-08 70.7 36.5 54 638-691 142-195 (546)
94 COG4637 Predicted ATPase [Gene 98.5 3.3E-08 7.1E-13 94.7 2.5 45 20-65 1-45 (373)
95 COG1106 Predicted ATPases [Gen 98.5 5.5E-08 1.2E-12 99.1 4.2 49 21-70 1-50 (371)
96 PF13558 SbcCD_C: Putative exo 98.5 9.5E-08 2.1E-12 77.0 4.7 54 968-1021 27-89 (90)
97 cd03274 ABC_SMC4_euk Eukaryoti 98.5 9.4E-08 2E-12 92.6 5.6 83 970-1054 124-206 (212)
98 cd03273 ABC_SMC2_euk Eukaryoti 98.5 1.2E-07 2.6E-12 95.6 5.9 79 970-1050 163-241 (251)
99 KOG0994 Extracellular matrix g 98.5 0.0052 1.1E-07 69.8 57.2 13 2-14 896-908 (1758)
100 PF13175 AAA_15: AAA ATPase do 98.5 1.2E-07 2.6E-12 105.7 5.5 72 968-1039 336-413 (415)
101 cd03259 ABC_Carb_Solutes_like 98.5 1.4E-07 2.9E-12 93.0 5.1 74 971-1048 128-201 (213)
102 COG3910 Predicted ATPase [Gene 98.5 1.3E-07 2.9E-12 83.1 4.2 39 37-75 32-70 (233)
103 COG1120 FepC ABC-type cobalami 98.5 2.4E-07 5.2E-12 89.5 6.3 85 969-1057 134-224 (258)
104 KOG0994 Extracellular matrix g 98.5 0.0062 1.4E-07 69.2 55.2 15 850-864 1727-1741(1758)
105 cd03293 ABC_NrtD_SsuB_transpor 98.5 2E-07 4.3E-12 92.3 5.6 73 971-1047 129-201 (220)
106 COG1126 GlnQ ABC-type polar am 98.5 3.2E-07 6.9E-12 83.5 6.2 63 971-1038 134-196 (240)
107 cd03235 ABC_Metallic_Cations A 98.5 2E-07 4.4E-12 91.7 5.5 73 971-1048 130-202 (213)
108 TIGR01184 ntrCD nitrate transp 98.4 2.2E-07 4.9E-12 92.2 5.1 74 971-1048 112-185 (230)
109 cd03225 ABC_cobalt_CbiO_domain 98.4 2.5E-07 5.5E-12 91.0 5.4 73 971-1048 132-204 (211)
110 cd00267 ABC_ATPase ABC (ATP-bi 98.4 2.5E-07 5.5E-12 85.7 5.1 69 974-1047 81-149 (157)
111 COG1116 TauB ABC-type nitrate/ 98.4 3E-07 6.4E-12 86.7 5.1 73 971-1047 128-200 (248)
112 cd03256 ABC_PhnC_transporter A 98.4 3.2E-07 6.9E-12 92.6 5.8 74 971-1048 142-215 (241)
113 cd03237 ABC_RNaseL_inhibitor_d 98.4 2.6E-07 5.6E-12 92.1 5.0 75 970-1048 112-186 (246)
114 PRK11247 ssuB aliphatic sulfon 98.4 2.9E-07 6.3E-12 92.5 5.4 73 971-1047 131-203 (257)
115 TIGR00960 3a0501s02 Type II (G 98.4 2.8E-07 6.1E-12 91.0 5.1 72 971-1047 136-207 (216)
116 TIGR01277 thiQ thiamine ABC tr 98.4 3.8E-07 8.2E-12 89.6 5.8 74 971-1048 126-199 (213)
117 cd03214 ABC_Iron-Siderophores_ 98.4 4.1E-07 8.9E-12 86.4 5.8 74 971-1048 95-168 (180)
118 COG1124 DppF ABC-type dipeptid 98.4 5.5E-07 1.2E-11 84.0 6.3 66 970-1039 138-203 (252)
119 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.4 3.6E-07 7.8E-12 90.4 5.4 72 971-1047 138-209 (218)
120 cd03261 ABC_Org_Solvent_Resist 98.4 3E-07 6.6E-12 92.1 4.9 73 971-1047 134-206 (235)
121 PRK11248 tauB taurine transpor 98.4 3.2E-07 7E-12 92.5 5.1 73 971-1047 126-198 (255)
122 TIGR01166 cbiO cobalt transpor 98.4 4.6E-07 1E-11 87.2 6.0 64 971-1039 125-188 (190)
123 cd03265 ABC_DrrA DrrA is the A 98.4 3.6E-07 7.8E-12 90.4 5.3 74 971-1048 129-202 (220)
124 cd03298 ABC_ThiQ_thiamine_tran 98.4 4.1E-07 8.9E-12 89.4 5.6 74 971-1048 126-199 (211)
125 cd03296 ABC_CysA_sulfate_impor 98.4 3.7E-07 8.1E-12 91.6 5.4 73 971-1047 134-206 (239)
126 TIGR02211 LolD_lipo_ex lipopro 98.4 4.7E-07 1E-11 89.8 6.1 67 971-1041 139-205 (221)
127 cd03226 ABC_cobalt_CbiO_domain 98.4 4E-07 8.7E-12 88.9 5.4 73 971-1048 124-196 (205)
128 TIGR02673 FtsE cell division A 98.4 3.2E-07 7E-12 90.4 4.8 73 971-1048 135-207 (214)
129 cd03230 ABC_DR_subfamily_A Thi 98.4 4.2E-07 9.1E-12 85.7 5.4 70 974-1048 96-165 (173)
130 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.4 3.6E-07 7.8E-12 90.2 5.0 73 971-1048 140-212 (224)
131 PF07888 CALCOCO1: Calcium bin 98.4 0.0066 1.4E-07 65.3 37.4 49 639-687 150-198 (546)
132 COG1125 OpuBA ABC-type proline 98.4 5.8E-07 1.3E-11 83.7 5.7 76 971-1050 133-208 (309)
133 cd03227 ABC_Class2 ABC-type Cl 98.4 5.6E-07 1.2E-11 83.4 5.8 70 972-1042 76-145 (162)
134 cd03297 ABC_ModC_molybdenum_tr 98.4 4.1E-07 9E-12 89.5 5.2 74 971-1048 129-202 (214)
135 PRK13538 cytochrome c biogenes 98.4 7.3E-07 1.6E-11 86.8 6.8 76 971-1053 127-202 (204)
136 PRK11629 lolD lipoprotein tran 98.4 4E-07 8.6E-12 91.0 5.1 70 971-1044 143-212 (233)
137 cd03268 ABC_BcrA_bacitracin_re 98.4 3.7E-07 8E-12 89.5 4.8 73 971-1048 124-196 (208)
138 cd03231 ABC_CcmA_heme_exporter 98.4 5.8E-07 1.2E-11 87.2 6.1 71 971-1046 123-193 (201)
139 cd03257 ABC_NikE_OppD_transpor 98.4 4.5E-07 9.7E-12 90.7 5.4 74 971-1048 143-216 (228)
140 TIGR02315 ABC_phnC phosphonate 98.4 5.7E-07 1.2E-11 90.8 6.2 73 971-1047 143-215 (243)
141 cd03260 ABC_PstB_phosphate_tra 98.4 4.2E-07 9E-12 90.6 5.0 72 971-1048 139-210 (227)
142 cd03229 ABC_Class3 This class 98.3 4.6E-07 1E-11 85.8 5.0 70 974-1047 101-170 (178)
143 TIGR02680 conserved hypothetic 98.3 0.026 5.7E-07 71.2 72.2 78 21-98 3-92 (1353)
144 TIGR03864 PQQ_ABC_ATP ABC tran 98.3 7.4E-07 1.6E-11 89.2 6.6 68 971-1042 130-197 (236)
145 cd03269 ABC_putative_ATPase Th 98.3 4E-07 8.6E-12 89.4 4.5 73 971-1048 126-198 (210)
146 cd03301 ABC_MalK_N The N-termi 98.3 5.5E-07 1.2E-11 88.8 5.4 74 971-1048 128-201 (213)
147 TIGR02770 nickel_nikD nickel i 98.3 5.5E-07 1.2E-11 89.7 5.2 74 971-1048 123-196 (230)
148 PRK14245 phosphate ABC transpo 98.3 5.6E-07 1.2E-11 91.1 5.4 73 970-1048 143-215 (250)
149 cd03218 ABC_YhbG The ABC trans 98.3 5.7E-07 1.2E-11 90.0 5.3 73 971-1048 131-203 (232)
150 COG4181 Predicted ABC-type tra 98.3 7.2E-07 1.6E-11 77.2 5.0 75 971-1050 144-219 (228)
151 cd03262 ABC_HisP_GlnQ_permease 98.3 5.8E-07 1.2E-11 88.7 5.2 73 971-1048 133-205 (213)
152 cd03258 ABC_MetN_methionine_tr 98.3 5.8E-07 1.2E-11 90.0 5.3 74 971-1048 138-211 (233)
153 cd03219 ABC_Mj1267_LivG_branch 98.3 5.6E-07 1.2E-11 90.4 5.1 74 970-1048 140-213 (236)
154 cd03263 ABC_subfamily_A The AB 98.3 5.3E-07 1.1E-11 89.4 4.9 72 971-1048 131-202 (220)
155 PRK11831 putative ABC transpor 98.3 5.4E-07 1.2E-11 91.9 5.0 73 971-1047 141-213 (269)
156 cd03264 ABC_drug_resistance_li 98.3 6E-07 1.3E-11 88.2 5.1 72 971-1048 128-199 (211)
157 PRK10584 putative ABC transpor 98.3 6E-07 1.3E-11 89.5 5.2 67 971-1041 144-210 (228)
158 PRK10771 thiQ thiamine transpo 98.3 7.1E-07 1.5E-11 89.1 5.7 74 971-1048 127-200 (232)
159 cd03266 ABC_NatA_sodium_export 98.3 5.1E-07 1.1E-11 89.4 4.6 72 971-1047 134-205 (218)
160 PRK13637 cbiO cobalt transport 98.3 6.6E-07 1.4E-11 92.0 5.5 77 970-1050 141-217 (287)
161 PRK14250 phosphate ABC transpo 98.3 7E-07 1.5E-11 89.6 5.6 75 970-1048 128-202 (241)
162 cd03294 ABC_Pro_Gly_Bertaine T 98.3 6.9E-07 1.5E-11 91.1 5.6 73 971-1047 158-230 (269)
163 cd03267 ABC_NatA_like Similar 98.3 6.2E-07 1.4E-11 89.5 5.1 74 971-1048 151-224 (236)
164 COG0444 DppD ABC-type dipeptid 98.3 8.2E-07 1.8E-11 87.3 5.7 76 971-1050 151-226 (316)
165 PRK15112 antimicrobial peptide 98.3 7E-07 1.5E-11 91.0 5.4 74 971-1048 147-220 (267)
166 PRK10575 iron-hydroxamate tran 98.3 8.1E-07 1.8E-11 90.5 5.8 74 971-1048 145-218 (265)
167 TIGR01188 drrA daunorubicin re 98.3 6.8E-07 1.5E-11 92.8 5.2 73 971-1048 122-194 (302)
168 cd03241 ABC_RecN RecN ATPase i 98.3 1.5E-06 3.3E-11 88.7 7.6 69 971-1041 168-236 (276)
169 PRK14258 phosphate ABC transpo 98.3 7.8E-07 1.7E-11 90.4 5.5 76 970-1049 147-222 (261)
170 cd03216 ABC_Carb_Monos_I This 98.3 8.1E-07 1.8E-11 82.4 5.1 69 974-1047 83-151 (163)
171 COG4525 TauB ABC-type taurine 98.3 1.1E-06 2.4E-11 78.0 5.6 65 971-1039 130-194 (259)
172 PRK13645 cbiO cobalt transport 98.3 7.7E-07 1.7E-11 92.0 5.5 74 971-1048 148-221 (289)
173 PRK14247 phosphate ABC transpo 98.3 8.3E-07 1.8E-11 89.9 5.5 72 971-1048 144-215 (250)
174 PRK10619 histidine/lysine/argi 98.3 7.8E-07 1.7E-11 90.4 5.3 73 971-1048 150-222 (257)
175 PRK14268 phosphate ABC transpo 98.3 7.3E-07 1.6E-11 90.6 5.1 73 970-1048 151-223 (258)
176 TIGR00972 3a0107s01c2 phosphat 98.3 7.6E-07 1.6E-11 89.9 5.2 73 970-1048 141-213 (247)
177 PRK11614 livF leucine/isoleuci 98.3 7.9E-07 1.7E-11 89.2 5.3 73 971-1048 135-207 (237)
178 TIGR01186 proV glycine betaine 98.3 7.3E-07 1.6E-11 93.4 5.2 74 971-1048 127-200 (363)
179 PRK11022 dppD dipeptide transp 98.3 7.3E-07 1.6E-11 93.0 5.1 75 971-1049 151-225 (326)
180 TIGR01187 potA spermidine/putr 98.3 7.5E-07 1.6E-11 93.1 5.2 74 971-1048 98-171 (325)
181 PRK13643 cbiO cobalt transport 98.3 8.4E-07 1.8E-11 91.3 5.5 74 970-1048 141-214 (288)
182 cd03295 ABC_OpuCA_Osmoprotecti 98.3 7.4E-07 1.6E-11 89.6 5.0 74 971-1048 133-206 (242)
183 cd03245 ABCC_bacteriocin_expor 98.3 9.8E-07 2.1E-11 87.5 5.7 71 971-1048 138-208 (220)
184 cd03292 ABC_FtsE_transporter F 98.3 8.3E-07 1.8E-11 87.6 5.2 72 971-1047 134-205 (214)
185 PRK10253 iron-enterobactin tra 98.3 1E-06 2.2E-11 89.8 5.9 74 971-1048 141-214 (265)
186 PRK14242 phosphate transporter 98.3 8.7E-07 1.9E-11 90.0 5.3 73 970-1048 146-218 (253)
187 cd03215 ABC_Carb_Monos_II This 98.3 8E-07 1.7E-11 84.6 4.8 70 974-1048 105-174 (182)
188 PRK13540 cytochrome c biogenes 98.3 1.4E-06 3E-11 84.5 6.5 66 971-1041 125-190 (200)
189 TIGR01189 ccmA heme ABC export 98.3 1.3E-06 2.8E-11 84.7 6.3 64 971-1039 125-188 (198)
190 PRK14269 phosphate ABC transpo 98.3 9.9E-07 2.1E-11 88.9 5.7 72 971-1048 140-211 (246)
191 PRK13646 cbiO cobalt transport 98.3 9.3E-07 2E-11 91.0 5.5 75 970-1048 142-216 (286)
192 PRK10070 glycine betaine trans 98.3 8.5E-07 1.8E-11 94.2 5.3 74 971-1048 162-235 (400)
193 cd03224 ABC_TM1139_LivF_branch 98.3 9.1E-07 2E-11 87.9 5.3 73 971-1048 130-202 (222)
194 TIGR02323 CP_lyasePhnK phospho 98.3 8.6E-07 1.9E-11 90.0 5.2 73 971-1047 146-218 (253)
195 TIGR03410 urea_trans_UrtE urea 98.3 9E-07 1.9E-11 88.4 5.2 75 970-1048 128-202 (230)
196 PRK13634 cbiO cobalt transport 98.3 9E-07 2E-11 91.2 5.3 75 970-1048 142-216 (290)
197 PRK11264 putative amino-acid A 98.3 9.3E-07 2E-11 89.6 5.3 74 970-1048 141-214 (250)
198 PRK13543 cytochrome c biogenes 98.3 1.6E-06 3.4E-11 85.2 6.7 73 971-1048 135-207 (214)
199 PRK14273 phosphate ABC transpo 98.3 1E-06 2.3E-11 89.4 5.6 73 970-1048 147-219 (254)
200 PRK14262 phosphate ABC transpo 98.3 9.2E-07 2E-11 89.6 5.1 73 970-1048 143-215 (250)
201 COG4674 Uncharacterized ABC-ty 98.3 3.3E-07 7.1E-12 81.3 1.6 39 25-63 13-52 (249)
202 PRK11308 dppF dipeptide transp 98.3 8.9E-07 1.9E-11 92.3 5.0 74 971-1048 152-225 (327)
203 PRK10418 nikD nickel transport 98.3 1E-06 2.2E-11 89.2 5.4 74 971-1048 138-211 (254)
204 cd03222 ABC_RNaseL_inhibitor T 98.3 1E-06 2.3E-11 81.8 4.9 70 974-1047 72-141 (177)
205 PRK13631 cbiO cobalt transport 98.3 1E-06 2.2E-11 91.5 5.4 73 971-1048 174-246 (320)
206 PRK09544 znuC high-affinity zi 98.3 9.3E-07 2E-11 88.7 4.9 73 971-1047 118-190 (251)
207 PRK13548 hmuV hemin importer A 98.3 1.1E-06 2.4E-11 89.0 5.6 77 971-1047 132-210 (258)
208 TIGR03740 galliderm_ABC gallid 98.3 8.6E-07 1.9E-11 87.9 4.7 73 971-1048 122-194 (223)
209 PRK13539 cytochrome c biogenes 98.3 1.9E-06 4.1E-11 84.1 6.9 64 971-1039 125-188 (207)
210 PRK11701 phnK phosphonate C-P 98.2 1.2E-06 2.5E-11 89.2 5.6 75 970-1048 148-222 (258)
211 PRK11650 ugpC glycerol-3-phosp 98.2 9.8E-07 2.1E-11 92.9 5.2 74 971-1048 132-205 (356)
212 PRK10908 cell division protein 98.2 1.1E-06 2.4E-11 87.1 5.4 72 971-1047 135-206 (222)
213 TIGR03005 ectoine_ehuA ectoine 98.2 1.1E-06 2.3E-11 89.2 5.3 74 971-1048 144-217 (252)
214 PRK14274 phosphate ABC transpo 98.2 1.1E-06 2.3E-11 89.5 5.3 73 970-1048 152-224 (259)
215 PRK14270 phosphate ABC transpo 98.2 1E-06 2.2E-11 89.2 5.2 73 970-1048 144-216 (251)
216 PRK10744 pstB phosphate transp 98.2 1.1E-06 2.4E-11 89.3 5.4 72 971-1048 154-225 (260)
217 cd03272 ABC_SMC3_euk Eukaryoti 98.2 1.1E-06 2.3E-11 88.9 5.2 77 970-1049 155-231 (243)
218 PRK15079 oligopeptide ABC tran 98.2 1.1E-06 2.4E-11 91.7 5.4 74 971-1048 159-232 (331)
219 PRK09452 potA putrescine/sperm 98.2 9.9E-07 2.1E-11 93.2 5.1 74 971-1048 142-215 (375)
220 COG4987 CydC ABC-type transpor 98.2 1.8E-06 4E-11 90.0 6.8 67 973-1045 474-540 (573)
221 PRK13651 cobalt transporter AT 98.2 1E-06 2.2E-11 91.0 5.1 74 970-1048 162-235 (305)
222 PRK09984 phosphonate/organopho 98.2 1.3E-06 2.8E-11 89.1 5.8 74 971-1048 150-223 (262)
223 TIGR01288 nodI ATP-binding ABC 98.2 9.8E-07 2.1E-11 91.7 5.0 73 971-1048 133-205 (303)
224 PRK11231 fecE iron-dicitrate t 98.2 1.2E-06 2.6E-11 88.9 5.5 72 971-1047 136-207 (255)
225 KOG0971 Microtubule-associated 98.2 0.015 3.4E-07 64.5 36.1 284 640-936 256-550 (1243)
226 PRK11153 metN DL-methionine tr 98.2 1E-06 2.2E-11 92.8 5.2 74 971-1048 138-211 (343)
227 PRK10247 putative ABC transpor 98.2 1.5E-06 3.2E-11 86.2 5.9 73 971-1048 135-207 (225)
228 TIGR03771 anch_rpt_ABC anchore 98.2 1.1E-06 2.4E-11 86.8 5.0 73 971-1048 111-183 (223)
229 TIGR02314 ABC_MetN D-methionin 98.2 1.2E-06 2.5E-11 91.4 5.3 74 971-1048 138-211 (343)
230 TIGR03411 urea_trans_UrtD urea 98.2 1.1E-06 2.4E-11 88.6 5.0 72 971-1048 141-212 (242)
231 PRK14240 phosphate transporter 98.2 1.3E-06 2.9E-11 88.5 5.6 73 970-1048 143-215 (250)
232 cd03233 ABC_PDR_domain1 The pl 98.2 1.7E-06 3.6E-11 83.9 6.1 75 970-1048 115-190 (202)
233 PRK14239 phosphate transporter 98.2 1.2E-06 2.7E-11 88.9 5.4 73 970-1048 145-217 (252)
234 PRK14241 phosphate transporter 98.2 1.2E-06 2.5E-11 89.2 5.2 73 970-1048 145-217 (258)
235 PRK09493 glnQ glutamine ABC tr 98.2 1.2E-06 2.6E-11 88.2 5.2 73 971-1048 134-206 (240)
236 PRK14259 phosphate ABC transpo 98.2 1.2E-06 2.6E-11 89.3 5.2 72 970-1047 151-222 (269)
237 PRK13638 cbiO cobalt transport 98.2 1.3E-06 2.9E-11 89.3 5.6 72 971-1047 134-205 (271)
238 KOG0976 Rho/Rac1-interacting s 98.2 0.015 3.3E-07 63.5 60.6 16 808-823 499-514 (1265)
239 KOG0977 Nuclear envelope prote 98.2 0.0045 9.7E-08 66.5 31.5 16 261-276 114-129 (546)
240 PRK11300 livG leucine/isoleuci 98.2 1.3E-06 2.7E-11 89.0 5.4 74 971-1048 151-224 (255)
241 cd03279 ABC_sbcCD SbcCD and ot 98.2 2.2E-06 4.8E-11 83.9 6.8 82 970-1052 120-207 (213)
242 COG1131 CcmA ABC-type multidru 98.2 1.4E-06 3E-11 89.1 5.6 77 970-1050 133-209 (293)
243 PRK14235 phosphate transporter 98.2 1.3E-06 2.8E-11 89.0 5.4 72 971-1048 161-232 (267)
244 PRK14243 phosphate transporter 98.2 1.3E-06 2.8E-11 88.9 5.3 75 970-1050 148-222 (264)
245 COG4175 ProV ABC-type proline/ 98.2 1.8E-06 3.8E-11 83.3 5.8 84 970-1057 161-250 (386)
246 PRK11000 maltose/maltodextrin 98.2 1.1E-06 2.5E-11 93.3 5.1 74 971-1048 131-204 (369)
247 PRK13547 hmuV hemin importer A 98.2 1.5E-06 3.2E-11 88.3 5.6 78 970-1047 142-224 (272)
248 PRK14255 phosphate ABC transpo 98.2 1.4E-06 3.1E-11 88.4 5.5 73 970-1048 145-217 (252)
249 PRK14244 phosphate ABC transpo 98.2 1.4E-06 3E-11 88.2 5.3 72 971-1048 147-218 (251)
250 PRK13649 cbiO cobalt transport 98.2 1.3E-06 2.8E-11 90.0 5.2 73 970-1047 142-214 (280)
251 PRK15056 manganese/iron transp 98.2 1.4E-06 3E-11 89.2 5.3 73 971-1048 140-212 (272)
252 PRK14265 phosphate ABC transpo 98.2 1.5E-06 3.2E-11 88.8 5.5 74 970-1049 158-231 (274)
253 COG4988 CydD ABC-type transpor 98.2 2E-06 4.4E-11 91.4 6.5 67 973-1045 456-522 (559)
254 PRK14238 phosphate transporter 98.2 1.4E-06 3.1E-11 88.9 5.3 73 970-1048 164-236 (271)
255 PRK10419 nikE nickel transport 98.2 1.7E-06 3.6E-11 88.2 5.8 73 971-1047 149-221 (268)
256 PRK14267 phosphate ABC transpo 98.2 1.3E-06 2.8E-11 88.7 4.9 73 970-1048 146-218 (253)
257 PRK09473 oppD oligopeptide tra 98.2 1.5E-06 3.3E-11 90.7 5.5 74 971-1048 159-232 (330)
258 cd03246 ABCC_Protease_Secretio 98.2 2.1E-06 4.6E-11 80.9 6.0 69 974-1048 97-165 (173)
259 cd03252 ABCC_Hemolysin The ABC 98.2 1.4E-06 3.1E-11 87.5 5.1 66 970-1041 135-200 (237)
260 TIGR02142 modC_ABC molybdenum 98.2 1.3E-06 2.9E-11 92.5 5.2 74 971-1048 129-202 (354)
261 cd03232 ABC_PDR_domain2 The pl 98.2 2.1E-06 4.6E-11 82.4 6.1 62 973-1039 108-169 (192)
262 cd03254 ABCC_Glucan_exporter_l 98.2 1.6E-06 3.4E-11 86.7 5.3 65 971-1041 137-201 (229)
263 COG4559 ABC-type hemin transpo 98.2 1.8E-06 4E-11 78.0 5.0 43 24-66 8-51 (259)
264 PRK14251 phosphate ABC transpo 98.2 1.5E-06 3.2E-11 88.2 5.1 73 970-1048 144-216 (251)
265 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.2 1.8E-06 4E-11 86.7 5.8 71 971-1048 137-207 (238)
266 PRK14248 phosphate ABC transpo 98.2 1.6E-06 3.5E-11 88.6 5.4 73 970-1048 161-233 (268)
267 PRK14271 phosphate ABC transpo 98.2 1.6E-06 3.4E-11 88.7 5.2 73 970-1048 160-232 (276)
268 PRK11124 artP arginine transpo 98.2 1.5E-06 3.2E-11 87.5 5.0 72 971-1047 139-210 (242)
269 cd03228 ABCC_MRP_Like The MRP 98.2 1.8E-06 3.9E-11 81.2 5.2 63 974-1042 97-159 (171)
270 PRK14256 phosphate ABC transpo 98.2 1.6E-06 3.6E-11 87.8 5.3 73 970-1048 145-217 (252)
271 PRK13409 putative ATPase RIL; 98.2 1.5E-06 3.2E-11 98.4 5.4 75 970-1048 450-524 (590)
272 PRK11144 modC molybdate transp 98.2 1.6E-06 3.4E-11 91.8 5.3 74 971-1048 126-199 (352)
273 cd03238 ABC_UvrA The excision 98.2 3E-06 6.4E-11 78.7 6.4 74 970-1047 84-157 (176)
274 TIGR02769 nickel_nikE nickel i 98.2 1.6E-06 3.4E-11 88.5 5.1 73 971-1047 148-220 (265)
275 COG4694 Uncharacterized protei 98.2 0.00026 5.7E-09 73.5 20.6 66 972-1038 528-597 (758)
276 PRK13545 tagH teichoic acids e 98.2 1.7E-06 3.7E-11 92.8 5.4 72 971-1047 141-212 (549)
277 PRK15093 antimicrobial peptide 98.2 1.4E-06 3.1E-11 91.3 4.8 74 971-1048 156-229 (330)
278 PRK13648 cbiO cobalt transport 98.2 3.1E-06 6.7E-11 86.5 7.2 73 971-1048 140-212 (269)
279 PRK14261 phosphate ABC transpo 98.2 1.7E-06 3.8E-11 87.7 5.3 73 970-1048 146-218 (253)
280 PRK13546 teichoic acids export 98.2 1.8E-06 3.9E-11 87.1 5.3 73 971-1048 141-213 (264)
281 PRK14275 phosphate ABC transpo 98.2 1.6E-06 3.4E-11 89.2 5.0 73 970-1048 179-251 (286)
282 PRK11432 fbpC ferric transport 98.2 1.7E-06 3.6E-11 90.9 5.2 74 971-1048 134-207 (351)
283 PRK10851 sulfate/thiosulfate t 98.2 1.7E-06 3.6E-11 91.1 5.2 74 971-1048 134-207 (353)
284 cd03213 ABCG_EPDR ABCG transpo 98.2 2.3E-06 4.9E-11 82.3 5.8 62 973-1039 111-172 (194)
285 TIGR01978 sufC FeS assembly AT 98.2 1.8E-06 4E-11 87.2 5.4 66 973-1043 144-209 (243)
286 cd03234 ABCG_White The White s 98.2 2.4E-06 5.2E-11 84.9 6.1 75 970-1049 140-215 (226)
287 PRK13647 cbiO cobalt transport 98.2 1.9E-06 4E-11 88.1 5.4 73 971-1048 136-208 (274)
288 cd03251 ABCC_MsbA MsbA is an e 98.2 2.3E-06 5.1E-11 85.8 6.1 66 971-1042 136-201 (234)
289 cd03248 ABCC_TAP TAP, the Tran 98.2 1.7E-06 3.8E-11 86.1 5.0 65 971-1041 148-212 (226)
290 TIGR03265 PhnT2 putative 2-ami 98.2 1.7E-06 3.6E-11 91.1 5.1 74 971-1048 132-205 (353)
291 PRK14253 phosphate ABC transpo 98.2 1.9E-06 4E-11 87.3 5.3 72 971-1048 143-214 (249)
292 PRK13650 cbiO cobalt transport 98.2 2.2E-06 4.8E-11 87.8 5.9 73 971-1048 138-210 (279)
293 TIGR03258 PhnT 2-aminoethylpho 98.2 1.8E-06 3.8E-11 91.0 5.2 75 971-1049 135-210 (362)
294 PRK13641 cbiO cobalt transport 98.2 2E-06 4.3E-11 88.6 5.5 73 970-1047 142-214 (287)
295 cd03217 ABC_FeS_Assembly ABC-t 98.2 2E-06 4.4E-11 83.2 5.3 72 972-1048 103-175 (200)
296 PRK13536 nodulation factor exp 98.2 1.7E-06 3.7E-11 90.5 5.1 75 971-1050 170-244 (340)
297 PRK14272 phosphate ABC transpo 98.2 1.9E-06 4.1E-11 87.5 5.3 73 970-1048 145-217 (252)
298 PRK03695 vitamin B12-transport 98.2 2E-06 4.4E-11 86.5 5.4 77 971-1048 124-203 (248)
299 PRK14263 phosphate ABC transpo 98.2 2E-06 4.3E-11 87.1 5.4 75 970-1050 146-220 (261)
300 PRK13636 cbiO cobalt transport 98.2 2E-06 4.3E-11 88.4 5.4 75 970-1048 138-212 (283)
301 TIGR03608 L_ocin_972_ABC putat 98.2 2.7E-06 5.8E-11 83.4 6.1 64 971-1039 132-195 (206)
302 COG1119 ModF ABC-type molybden 98.2 4.6E-06 9.9E-11 78.1 7.1 75 970-1048 168-243 (257)
303 TIGR03873 F420-0_ABC_ATP propo 98.2 2.3E-06 5E-11 86.8 5.8 73 971-1048 135-207 (256)
304 PRK13633 cobalt transporter AT 98.2 3.2E-06 7E-11 86.8 6.8 73 971-1048 142-214 (280)
305 PRK13652 cbiO cobalt transport 98.2 2.5E-06 5.3E-11 87.5 5.9 74 971-1048 135-208 (277)
306 COG1340 Uncharacterized archae 98.2 0.0091 2E-07 58.3 31.4 30 877-906 219-248 (294)
307 PRK14266 phosphate ABC transpo 98.2 2.3E-06 5E-11 86.7 5.6 72 971-1048 144-215 (250)
308 PRK14237 phosphate transporter 98.2 2.2E-06 4.9E-11 87.3 5.5 73 970-1048 160-232 (267)
309 PRK10895 lipopolysaccharide AB 98.2 2.1E-06 4.6E-11 86.4 5.2 72 971-1047 135-206 (241)
310 TIGR03415 ABC_choXWV_ATP choli 98.2 2.1E-06 4.5E-11 90.4 5.2 74 971-1048 162-235 (382)
311 PRK14254 phosphate ABC transpo 98.1 2.3E-06 5E-11 87.8 5.4 71 971-1047 178-248 (285)
312 PRK13632 cbiO cobalt transport 98.1 4E-06 8.7E-11 85.7 7.1 67 971-1041 140-206 (271)
313 PRK13639 cbiO cobalt transport 98.1 2.2E-06 4.9E-11 87.7 5.2 73 971-1048 135-207 (275)
314 cd03300 ABC_PotA_N PotA is an 98.1 2.3E-06 5E-11 85.4 5.2 72 972-1047 129-200 (232)
315 cd03270 ABC_UvrA_I The excisio 98.1 2.8E-06 6E-11 83.8 5.7 76 970-1050 134-210 (226)
316 PRK14236 phosphate transporter 98.1 2.4E-06 5.3E-11 87.3 5.4 71 971-1047 166-236 (272)
317 PRK14249 phosphate ABC transpo 98.1 2.6E-06 5.6E-11 86.3 5.5 73 970-1048 144-216 (251)
318 PRK15134 microcin C ABC transp 98.1 2.3E-06 5E-11 97.3 5.7 75 970-1048 153-227 (529)
319 COG4619 ABC-type uncharacteriz 98.1 3.5E-06 7.7E-11 72.8 5.3 66 970-1040 130-196 (223)
320 COG1123 ATPase components of v 98.1 2.4E-06 5.3E-11 91.2 5.4 77 970-1050 151-227 (539)
321 PRK13537 nodulation ABC transp 98.1 2.2E-06 4.8E-11 88.8 5.0 73 971-1048 136-208 (306)
322 cd03369 ABCC_NFT1 Domain 2 of 98.1 3E-06 6.4E-11 83.0 5.6 64 971-1040 123-186 (207)
323 PRK14260 phosphate ABC transpo 98.1 2.5E-06 5.5E-11 86.7 5.4 75 970-1050 147-221 (259)
324 TIGR02324 CP_lyasePhnL phospho 98.1 3.8E-06 8.2E-11 83.5 6.5 64 971-1039 147-210 (224)
325 COG1127 Ttg2A ABC-type transpo 98.1 3.5E-06 7.5E-11 78.3 5.5 76 971-1050 143-218 (263)
326 cd03247 ABCC_cytochrome_bd The 98.1 3.8E-06 8.3E-11 79.7 6.2 65 971-1041 96-160 (178)
327 cd03244 ABCC_MRP_domain2 Domai 98.1 2.8E-06 6E-11 84.3 5.3 64 971-1040 137-200 (221)
328 PRK11607 potG putrescine trans 98.1 2.5E-06 5.5E-11 90.4 5.2 74 971-1048 147-220 (377)
329 PRK10938 putative molybdenum t 98.1 3.2E-06 7E-11 95.2 6.3 73 970-1047 132-204 (490)
330 PRK13541 cytochrome c biogenes 98.1 4.6E-06 1E-10 80.5 6.5 64 971-1039 121-184 (195)
331 PRK13640 cbiO cobalt transport 98.1 3.1E-06 6.7E-11 86.9 5.6 73 971-1048 141-213 (282)
332 COG1123 ATPase components of v 98.1 4E-06 8.6E-11 89.7 6.4 77 970-1050 426-502 (539)
333 TIGR02633 xylG D-xylose ABC tr 98.1 2.8E-06 6E-11 96.1 5.6 74 970-1048 400-473 (500)
334 PRK11637 AmiB activator; Provi 98.1 0.003 6.6E-08 69.3 28.9 47 262-308 70-116 (428)
335 PRK15134 microcin C ABC transp 98.1 2.6E-06 5.7E-11 96.7 5.4 75 970-1048 422-496 (529)
336 PRK10938 putative molybdenum t 98.1 3.6E-06 7.9E-11 94.8 6.4 75 970-1048 398-473 (490)
337 TIGR03269 met_CoM_red_A2 methy 98.1 3.2E-06 7E-11 95.9 6.0 74 970-1047 165-238 (520)
338 TIGR00611 recf recF protein. A 98.1 6.8E-05 1.5E-09 79.3 15.4 78 972-1053 274-358 (365)
339 cd03223 ABCD_peroxisomal_ALDP 98.1 4.3E-06 9.3E-11 77.9 5.7 69 970-1047 88-156 (166)
340 PRK15439 autoinducer 2 ABC tra 98.1 3.4E-06 7.5E-11 95.1 6.1 73 970-1047 400-472 (510)
341 TIGR00968 3a0106s01 sulfate AB 98.1 3.5E-06 7.5E-11 84.3 5.4 73 971-1047 128-200 (237)
342 PRK14252 phosphate ABC transpo 98.1 3.4E-06 7.3E-11 86.1 5.3 72 971-1048 159-230 (265)
343 PRK09700 D-allose transporter 98.1 3.3E-06 7.2E-11 95.6 5.8 73 970-1047 406-478 (510)
344 PRK10762 D-ribose transporter 98.1 3.1E-06 6.7E-11 95.5 5.5 74 970-1048 392-465 (501)
345 cd03271 ABC_UvrA_II The excisi 98.1 5.3E-06 1.1E-10 82.3 6.3 67 971-1039 167-233 (261)
346 cd03299 ABC_ModC_like Archeal 98.1 4.1E-06 8.8E-11 83.7 5.6 73 971-1047 127-199 (235)
347 PRK13642 cbiO cobalt transport 98.1 5.4E-06 1.2E-10 85.0 6.6 73 971-1048 138-210 (277)
348 PF05557 MAD: Mitotic checkpoi 98.1 7.4E-05 1.6E-09 87.8 16.8 39 894-932 607-645 (722)
349 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 3.5E-06 7.5E-11 76.1 4.5 67 974-1048 71-137 (144)
350 PRK09580 sufC cysteine desulfu 98.1 4.3E-06 9.3E-11 84.8 5.8 63 973-1040 145-207 (248)
351 cd03253 ABCC_ATM1_transporter 98.1 3.6E-06 7.8E-11 84.5 5.1 65 971-1041 135-199 (236)
352 PF05701 WEMBL: Weak chloropla 98.1 0.036 7.8E-07 62.1 64.2 10 142-151 6-15 (522)
353 PRK11637 AmiB activator; Provi 98.1 0.0054 1.2E-07 67.4 30.0 83 218-311 44-126 (428)
354 COG2884 FtsE Predicted ATPase 98.1 6.5E-06 1.4E-10 73.2 5.8 70 971-1045 135-204 (223)
355 PRK13549 xylose transporter AT 98.1 3.8E-06 8.2E-11 94.9 5.7 73 970-1047 402-474 (506)
356 COG2274 SunT ABC-type bacterio 98.1 4.2E-06 9.1E-11 95.2 6.0 71 973-1050 609-679 (709)
357 COG4604 CeuD ABC-type enteroch 98.1 4E-06 8.7E-11 74.8 4.5 36 34-69 18-54 (252)
358 PRK14264 phosphate ABC transpo 98.1 5.1E-06 1.1E-10 86.3 6.2 71 971-1047 198-268 (305)
359 COG4938 Uncharacterized conser 98.1 3.7E-06 8E-11 79.1 4.5 46 22-68 2-47 (374)
360 PRK10261 glutathione transport 98.1 3.5E-06 7.7E-11 97.1 5.5 75 970-1048 460-534 (623)
361 PRK11288 araG L-arabinose tran 98.1 3.9E-06 8.5E-11 94.6 5.7 73 970-1047 393-465 (501)
362 PF00038 Filament: Intermediat 98.1 0.018 3.9E-07 60.6 32.8 30 641-670 6-35 (312)
363 KOG1029 Endocytic adaptor prot 98.1 0.031 6.8E-07 61.0 34.0 13 1027-1039 1073-1085(1118)
364 TIGR03522 GldA_ABC_ATP gliding 98.1 3.8E-06 8.2E-11 87.1 5.0 74 971-1050 131-204 (301)
365 PRK15177 Vi polysaccharide exp 98.1 3.3E-06 7.3E-11 82.4 4.3 73 970-1048 101-173 (213)
366 TIGR03269 met_CoM_red_A2 methy 98.1 3.5E-06 7.6E-11 95.7 5.1 75 970-1048 424-498 (520)
367 PRK13644 cbiO cobalt transport 98.1 5.5E-06 1.2E-10 84.6 6.0 72 971-1048 134-205 (274)
368 PRK13635 cbiO cobalt transport 98.1 5E-06 1.1E-10 85.2 5.7 73 971-1048 138-210 (279)
369 COG3842 PotA ABC-type spermidi 98.1 3.2E-06 6.9E-11 86.1 4.1 84 970-1057 133-222 (352)
370 COG1118 CysA ABC-type sulfate/ 98.1 4.2E-06 9.2E-11 80.7 4.6 75 970-1048 134-208 (345)
371 PRK00064 recF recombination pr 98.1 8.6E-05 1.9E-09 78.9 15.0 66 970-1039 270-340 (361)
372 TIGR02982 heterocyst_DevA ABC 98.0 5.4E-06 1.2E-10 82.0 5.6 72 972-1048 140-211 (220)
373 PRK10982 galactose/methyl gala 98.0 5.1E-06 1.1E-10 93.6 6.0 73 970-1047 388-460 (491)
374 PRK14257 phosphate ABC transpo 98.0 5.2E-06 1.1E-10 86.6 5.4 72 971-1048 223-294 (329)
375 CHL00131 ycf16 sulfate ABC tra 98.0 7.1E-06 1.5E-10 83.4 6.3 62 973-1039 151-212 (252)
376 PRK10982 galactose/methyl gala 98.0 4.4E-06 9.6E-11 94.0 5.1 74 970-1048 131-204 (491)
377 cd03236 ABC_RNaseL_inhibitor_d 98.0 5.2E-06 1.1E-10 83.2 4.9 73 971-1048 137-209 (255)
378 COG4559 ABC-type hemin transpo 98.0 9.8E-06 2.1E-10 73.5 6.0 79 969-1048 131-211 (259)
379 PRK09536 btuD corrinoid ABC tr 98.0 5.5E-06 1.2E-10 88.2 5.2 74 970-1048 136-209 (402)
380 PF09726 Macoilin: Transmembra 98.0 0.0022 4.8E-08 73.0 25.8 92 641-737 420-511 (697)
381 COG1120 FepC ABC-type cobalami 98.0 9.5E-06 2.1E-10 78.6 6.1 34 34-67 19-53 (258)
382 PRK14246 phosphate ABC transpo 98.0 6.2E-06 1.3E-10 83.3 5.2 71 971-1047 151-221 (257)
383 COG4608 AppF ABC-type oligopep 98.0 1.1E-05 2.3E-10 77.7 6.2 77 970-1050 106-182 (268)
384 COG5293 Predicted ATPase [Gene 98.0 0.026 5.7E-07 57.6 35.0 110 923-1039 439-556 (591)
385 PRK11288 araG L-arabinose tran 98.0 5.6E-06 1.2E-10 93.4 5.1 73 970-1047 137-209 (501)
386 cd03250 ABCC_MRP_domain1 Domai 98.0 1.1E-05 2.3E-10 78.8 6.4 67 971-1042 125-192 (204)
387 cd03290 ABCC_SUR1_N The SUR do 98.0 1.1E-05 2.5E-10 79.6 6.6 73 971-1048 138-211 (218)
388 TIGR02633 xylG D-xylose ABC tr 98.0 5.7E-06 1.2E-10 93.5 4.9 72 971-1047 139-210 (500)
389 PRK13549 xylose transporter AT 98.0 5.7E-06 1.2E-10 93.4 4.9 74 970-1048 140-213 (506)
390 PRK15439 autoinducer 2 ABC tra 98.0 5.9E-06 1.3E-10 93.2 5.0 74 970-1048 137-210 (510)
391 PRK10261 glutathione transport 98.0 6.8E-06 1.5E-10 94.8 5.5 75 970-1048 165-239 (623)
392 KOG0977 Nuclear envelope prote 98.0 0.02 4.3E-07 61.8 29.9 40 638-677 91-130 (546)
393 PRK13409 putative ATPase RIL; 97.9 8E-06 1.7E-10 92.5 5.2 75 970-1050 209-283 (590)
394 PRK09700 D-allose transporter 97.9 7.6E-06 1.7E-10 92.7 4.9 74 970-1048 142-215 (510)
395 PF09726 Macoilin: Transmembra 97.9 0.021 4.5E-07 65.3 31.7 33 408-440 622-654 (697)
396 PRK10762 D-ribose transporter 97.9 8.3E-06 1.8E-10 92.0 5.0 74 970-1048 138-211 (501)
397 COG1117 PstB ABC-type phosphat 97.9 2.2E-05 4.8E-10 71.4 6.5 61 972-1038 148-208 (253)
398 TIGR02203 MsbA_lipidA lipid A 97.9 9.4E-06 2E-10 94.1 5.4 67 973-1046 469-535 (571)
399 PRK11174 cysteine/glutathione 97.9 9.8E-06 2.1E-10 94.0 5.4 68 973-1047 485-552 (588)
400 cd03288 ABCC_SUR2 The SUR doma 97.9 1.2E-05 2.5E-10 81.7 5.3 66 971-1042 154-219 (257)
401 COG4172 ABC-type uncharacteriz 97.9 1.5E-05 3.2E-10 79.8 5.4 78 971-1052 155-232 (534)
402 cd03289 ABCC_CFTR2 The CFTR su 97.9 1.3E-05 2.8E-10 81.1 5.1 70 972-1048 137-206 (275)
403 cd03291 ABCC_CFTR1 The CFTR su 97.9 2E-05 4.3E-10 80.1 6.4 71 971-1048 157-228 (282)
404 TIGR03719 ABC_ABC_ChvD ATP-bin 97.9 8E-06 1.7E-10 93.2 3.8 71 970-1048 440-510 (552)
405 TIGR01192 chvA glucan exporter 97.9 1.5E-05 3.3E-10 91.5 5.9 64 972-1041 470-533 (585)
406 KOG1003 Actin filament-coating 97.9 0.018 3.9E-07 51.6 23.6 205 636-859 1-205 (205)
407 PRK10789 putative multidrug tr 97.9 1.6E-05 3.5E-10 91.3 5.7 65 972-1042 450-514 (569)
408 COG4372 Uncharacterized protei 97.9 0.038 8.3E-07 55.0 31.7 45 262-306 125-169 (499)
409 KOG1029 Endocytic adaptor prot 97.9 0.075 1.6E-06 58.2 33.9 6 1029-1034 1054-1059(1118)
410 PRK13657 cyclic beta-1,2-gluca 97.8 1.5E-05 3.2E-10 92.3 5.2 63 973-1041 471-533 (588)
411 COG3839 MalK ABC-type sugar tr 97.8 2.1E-05 4.7E-10 79.7 5.6 74 971-1048 131-204 (338)
412 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 1.5E-05 3.3E-10 76.7 4.3 31 34-64 21-52 (254)
413 PRK11176 lipid transporter ATP 97.8 1.8E-05 3.8E-10 91.8 5.7 64 973-1042 480-543 (582)
414 PRK10636 putative ABC transpor 97.8 1.2E-05 2.6E-10 92.8 4.2 70 970-1047 427-496 (638)
415 PF09730 BicD: Microtubule-ass 97.8 0.1 2.2E-06 59.1 55.2 57 639-695 265-321 (717)
416 TIGR01194 cyc_pep_trnsptr cycl 97.8 2.2E-05 4.7E-10 89.7 6.1 71 972-1047 469-539 (555)
417 COG1579 Zn-ribbon protein, pos 97.8 0.015 3.2E-07 55.6 23.6 65 640-704 18-82 (239)
418 COG4598 HisP ABC-type histidin 97.8 3.7E-05 8.1E-10 67.4 5.9 63 971-1038 150-212 (256)
419 PRK14265 phosphate ABC transpo 97.8 3.5E-05 7.7E-10 78.8 6.9 55 11-65 12-69 (274)
420 PRK10790 putative multidrug tr 97.8 2E-05 4.3E-10 91.5 5.5 65 973-1043 476-540 (592)
421 PLN03211 ABC transporter G-25; 97.8 2.8E-05 6E-10 89.5 6.5 64 971-1039 204-267 (659)
422 PRK11160 cysteine/glutathione 97.8 2.2E-05 4.8E-10 90.1 5.7 65 972-1042 474-538 (574)
423 COG4618 ArpD ABC-type protease 97.8 3.3E-05 7.2E-10 80.1 6.3 62 972-1039 471-533 (580)
424 COG4604 CeuD ABC-type enteroch 97.8 1.9E-05 4.2E-10 70.6 3.8 83 970-1057 132-221 (252)
425 PRK11819 putative ABC transpor 97.8 1.4E-05 3E-10 91.3 3.8 71 970-1048 442-512 (556)
426 COG1135 AbcC ABC-type metal io 97.8 4.6E-05 1E-09 74.0 6.6 66 970-1039 138-203 (339)
427 cd03242 ABC_RecF RecF is a rec 97.8 0.00014 3E-09 74.2 10.5 68 971-1043 181-253 (270)
428 PRK15064 ABC transporter ATP-b 97.8 1.8E-05 3.9E-10 90.1 4.5 70 970-1047 435-504 (530)
429 TIGR03375 type_I_sec_LssB type 97.8 2.2E-05 4.8E-10 92.8 5.3 69 973-1048 601-669 (694)
430 PRK14242 phosphate transporter 97.8 3.8E-05 8.3E-10 78.0 6.4 50 16-65 3-55 (253)
431 COG4133 CcmA ABC-type transpor 97.8 2.4E-05 5.3E-10 69.7 4.2 65 970-1039 127-191 (209)
432 COG0411 LivG ABC-type branched 97.8 6.6E-06 1.4E-10 77.1 0.7 36 28-63 12-51 (250)
433 PRK04778 septation ring format 97.8 0.13 2.9E-06 58.7 55.7 32 873-904 477-508 (569)
434 PF05701 WEMBL: Weak chloropla 97.8 0.12 2.6E-06 58.0 63.2 33 640-672 289-321 (522)
435 COG0396 sufC Cysteine desulfur 97.8 5.1E-05 1.1E-09 70.3 6.1 45 19-63 3-51 (251)
436 COG4172 ABC-type uncharacteriz 97.8 3.5E-05 7.7E-10 77.2 5.5 70 970-1044 423-492 (534)
437 PRK15064 ABC transporter ATP-b 97.8 2.5E-05 5.4E-10 88.9 5.2 70 970-1047 152-221 (530)
438 PRK10522 multidrug transporter 97.8 3.1E-05 6.6E-10 88.6 5.8 71 972-1047 448-518 (547)
439 TIGR00630 uvra excinuclease AB 97.8 2.5E-05 5.4E-10 91.7 5.2 74 970-1048 484-558 (924)
440 TIGR01846 type_I_sec_HlyB type 97.8 2.8E-05 6.1E-10 91.8 5.7 63 973-1041 593-655 (694)
441 TIGR02868 CydC thiol reductant 97.8 3.1E-05 6.6E-10 88.6 5.8 60 973-1038 470-529 (529)
442 PRK14268 phosphate ABC transpo 97.8 4.6E-05 1E-09 77.4 6.5 53 10-63 3-59 (258)
443 cd03215 ABC_Carb_Monos_II This 97.8 3.7E-05 8E-10 73.2 5.4 45 19-65 4-49 (182)
444 TIGR01842 type_I_sec_PrtD type 97.8 2.9E-05 6.4E-10 88.8 5.6 64 972-1040 453-516 (544)
445 TIGR02204 MsbA_rel ABC transpo 97.7 3E-05 6.5E-10 89.9 5.5 63 973-1041 476-538 (576)
446 PRK10584 putative ABC transpor 97.7 5.5E-05 1.2E-09 75.5 6.5 46 18-64 5-58 (228)
447 cd03238 ABC_UvrA The excision 97.7 3E-05 6.5E-10 72.1 4.2 30 33-62 11-41 (176)
448 COG4372 Uncharacterized protei 97.7 0.064 1.4E-06 53.5 32.7 48 186-233 74-121 (499)
449 PF06470 SMC_hinge: SMC protei 97.7 0.00015 3.3E-09 63.5 8.3 115 474-592 3-119 (120)
450 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 5.4E-05 1.2E-09 68.4 5.6 31 33-63 16-47 (144)
451 COG1132 MdlB ABC-type multidru 97.7 3.4E-05 7.4E-10 88.9 5.3 69 973-1048 465-533 (567)
452 TIGR03719 ABC_ABC_ChvD ATP-bin 97.7 3.6E-05 7.9E-10 87.9 5.3 70 970-1047 158-227 (552)
453 COG1126 GlnQ ABC-type polar am 97.7 3.9E-05 8.5E-10 70.3 4.2 32 34-65 19-51 (240)
454 cd03296 ABC_CysA_sulfate_impor 97.7 5.6E-05 1.2E-09 75.9 5.9 31 33-63 18-49 (239)
455 KOG0057 Mitochondrial Fe/S clu 97.7 6.6E-05 1.4E-09 78.9 6.4 67 973-1045 487-553 (591)
456 PRK13538 cytochrome c biogenes 97.7 6.6E-05 1.4E-09 73.1 6.2 45 20-64 2-49 (204)
457 PRK13539 cytochrome c biogenes 97.7 6.5E-05 1.4E-09 73.3 6.1 45 19-64 2-50 (207)
458 PRK11819 putative ABC transpor 97.7 4.1E-05 8.9E-10 87.4 5.4 71 970-1048 160-230 (556)
459 PRK11147 ABC transporter ATPas 97.7 2.8E-05 6.1E-10 90.1 4.1 70 970-1047 437-506 (635)
460 COG4778 PhnL ABC-type phosphon 97.7 3.3E-05 7.1E-10 67.1 3.3 68 970-1042 149-216 (235)
461 COG1137 YhbG ABC-type (unclass 97.7 9.8E-05 2.1E-09 66.5 6.3 61 972-1038 138-198 (243)
462 PRK13540 cytochrome c biogenes 97.7 7.9E-05 1.7E-09 72.3 6.1 44 20-63 2-48 (200)
463 PRK11248 tauB taurine transpor 97.6 7.7E-05 1.7E-09 75.3 6.1 44 20-63 2-48 (255)
464 COG4133 CcmA ABC-type transpor 97.6 0.00013 2.7E-09 65.3 6.5 33 33-65 18-51 (209)
465 PRK14261 phosphate ABC transpo 97.6 8.1E-05 1.8E-09 75.5 6.3 45 19-64 6-54 (253)
466 PF00038 Filament: Intermediat 97.6 0.12 2.6E-06 54.4 37.4 19 191-209 9-27 (312)
467 TIGR02315 ABC_phnC phosphonate 97.6 7.6E-05 1.6E-09 75.4 6.0 31 33-63 18-49 (243)
468 PLN03073 ABC transporter F fam 97.6 4.4E-05 9.6E-10 88.4 4.8 70 970-1047 624-693 (718)
469 cd00267 ABC_ATPase ABC (ATP-bi 97.6 7.6E-05 1.7E-09 69.2 5.4 34 33-66 15-49 (157)
470 PRK14079 recF recombination pr 97.6 0.0015 3.2E-08 69.1 15.6 61 972-1037 262-327 (349)
471 PRK14245 phosphate ABC transpo 97.6 7.9E-05 1.7E-09 75.5 5.9 47 18-64 2-51 (250)
472 TIGR02673 FtsE cell division A 97.6 8.7E-05 1.9E-09 73.2 6.1 44 20-63 2-49 (214)
473 PF12718 Tropomyosin_1: Tropom 97.6 0.033 7.3E-07 49.3 21.4 49 279-327 12-60 (143)
474 COG0396 sufC Cysteine desulfur 97.6 9.6E-05 2.1E-09 68.5 5.7 62 973-1039 144-205 (251)
475 cd03264 ABC_drug_resistance_li 97.6 6E-05 1.3E-09 74.1 4.7 31 33-63 16-46 (211)
476 PRK14237 phosphate transporter 97.6 9.6E-05 2.1E-09 75.4 6.3 32 33-64 36-68 (267)
477 cd03265 ABC_DrrA DrrA is the A 97.6 9.2E-05 2E-09 73.3 6.0 31 33-63 16-47 (220)
478 PRK14247 phosphate ABC transpo 97.6 8.8E-05 1.9E-09 75.2 6.0 44 20-63 4-50 (250)
479 cd03248 ABCC_TAP TAP, the Tran 97.6 0.00012 2.7E-09 72.8 6.9 49 16-64 8-62 (226)
480 PRK11147 ABC transporter ATPas 97.6 5.8E-05 1.3E-09 87.6 5.2 70 970-1047 153-222 (635)
481 PF00005 ABC_tran: ABC transpo 97.6 4.5E-05 9.7E-10 69.0 3.4 29 35-63 3-32 (137)
482 PRK11247 ssuB aliphatic sulfon 97.6 0.00011 2.4E-09 73.9 6.6 46 18-63 11-59 (257)
483 KOG0058 Peptide exporter, ABC 97.6 8.1E-05 1.8E-09 81.5 5.8 67 973-1045 604-670 (716)
484 PRK14262 phosphate ABC transpo 97.6 9.4E-05 2E-09 75.0 6.0 46 19-64 3-51 (250)
485 cd03262 ABC_HisP_GlnQ_permease 97.6 0.0001 2.2E-09 72.8 6.0 31 33-63 16-47 (213)
486 PRK10744 pstB phosphate transp 97.6 0.00011 2.4E-09 74.8 6.4 46 19-64 13-61 (260)
487 TIGR01257 rim_protein retinal- 97.6 5.8E-05 1.3E-09 95.6 5.1 73 970-1048 1058-1130(2272)
488 TIGR00960 3a0501s02 Type II (G 97.6 0.00011 2.4E-09 72.5 6.2 32 33-64 19-51 (216)
489 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 0.0001 2.2E-09 73.9 5.9 31 33-63 17-48 (236)
490 PRK09544 znuC high-affinity zi 97.6 9E-05 1.9E-09 74.5 5.5 31 33-63 20-51 (251)
491 PRK13638 cbiO cobalt transport 97.6 0.00011 2.4E-09 75.3 6.2 44 20-63 2-48 (271)
492 PRK14238 phosphate transporter 97.6 0.00011 2.4E-09 75.0 6.1 49 17-65 22-73 (271)
493 KOG0976 Rho/Rac1-interacting s 97.6 0.21 4.5E-06 55.1 60.8 20 873-892 484-503 (1265)
494 PRK11629 lolD lipoprotein tran 97.6 0.00012 2.5E-09 73.3 6.0 45 19-64 5-57 (233)
495 PRK14243 phosphate transporter 97.6 0.00013 2.7E-09 74.4 6.3 45 19-64 10-58 (264)
496 TIGR03797 NHPM_micro_ABC2 NHPM 97.6 7.3E-05 1.6E-09 88.3 5.3 66 973-1047 588-653 (686)
497 PRK00349 uvrA excinuclease ABC 97.6 0.0001 2.2E-09 86.9 6.4 68 971-1040 828-895 (943)
498 PRK14273 phosphate ABC transpo 97.6 0.00013 2.8E-09 74.1 6.4 45 19-63 7-54 (254)
499 cd03269 ABC_putative_ATPase Th 97.6 0.00011 2.5E-09 72.1 5.8 31 33-63 16-47 (210)
500 PRK14275 phosphate ABC transpo 97.6 0.00013 2.8E-09 75.1 6.4 46 18-63 38-86 (286)
No 1
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-102 Score=839.28 Aligned_cols=1035 Identities=37% Similarity=0.602 Sum_probs=871.7
Q ss_pred CCCCCCCCCeeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCcee
Q 001536 11 GYGPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYA 90 (1058)
Q Consensus 11 ~~~~~~~~~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~ 90 (1058)
++..+....|+|.+|+|.|||||.+..|+|+|.+|+|+|+||||||.||.||+.|||++++.+.||+++++||+.|+++|
T Consensus 31 ~~~~~~~~sG~I~sI~L~NFMCHsnL~IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A 110 (1074)
T KOG0250|consen 31 DFTLQRAESGKIESIHLTNFMCHSNLLIEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSA 110 (1074)
T ss_pred chhhhhhhcceEEEEEEeeecccccceeccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCcce
Confidence 44445566699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCccCcccCCCeEEEEEEEecCcceEEEE-cCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHh
Q 001536 91 MVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLK-DHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (1058)
Q Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (1058)
.|.|+++|.|.++|.|++||+.|+|.|+|...+++|++. +.+|++|+.+..++..++..|||++.||++|++|+.++.|
T Consensus 111 ~IsItL~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~F 190 (1074)
T KOG0250|consen 111 KISITLSNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSF 190 (1074)
T ss_pred EEEEEEecCCcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHH
Confidence 999999999999999999999999999999655555555 7899999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q 001536 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKK 249 (1058)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 249 (1058)
|....+.++|++|+.++.++.+...+..+.+.+....+.+......+..+++++...+..+..++....+...+..+...
T Consensus 191 L~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k 270 (1074)
T KOG0250|consen 191 LANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAK 270 (1074)
T ss_pred HhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001536 250 LAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLAT 329 (1058)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (1058)
+.|..+.....++......+...+.....+++.++.....+..+...+.+.+.++..+.........++..+.+.+..+.
T Consensus 271 ~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~ 350 (1074)
T KOG0250|consen 271 MAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLR 350 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 001536 330 KEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEK 409 (1058)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 409 (1058)
.+..+++..+....+.+..++..+..+++.+..+..........++.+.+..+..|..+++.++..+..+..+.+.+...
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888887776666677778888889999999999999889999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccHHHHHHHHHhhccCCCCCCcccccccEEecCCC
Q 001536 410 LSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGD 489 (1058)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 489 (1058)
....+.+...+...+..++..++.....+..+.....+.+..|+ +.+..++..|......|..+|.||++.++.+.+ +
T Consensus 431 ~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~-~ 508 (1074)
T KOG0250|consen 431 AKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKE-P 508 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhhHHHHHHHHHHHhcCCCCCCCCccceeEecC-c
Confidence 88888889899999999999999999999999999889999999 999999999999888888899999999999999 9
Q ss_pred ChHHHHHHHHhccccceeecchhhHHHHHHHHHHhcCCC--ccEEEEecCCCCCCCCCCCCCCCCCCchhhccccCcHHH
Q 001536 490 TWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNH--LQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTV 567 (1058)
Q Consensus 490 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 567 (1058)
+|..+++.++|+.+.+|+|.+..++..+..+++...++. .++++..+ ++..++.+..+...++.+++.|..++|.+
T Consensus 509 KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~--~~~~y~~~~~p~~~~pTil~~le~ddp~V 586 (1074)
T KOG0250|consen 509 KWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSF--TPFDYSVGRNPGYEFPTILDALEFDDPEV 586 (1074)
T ss_pred HHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecC--CccccccccCCCCCCCceeeeeecCChHH
Confidence 999999999999999999999999999999999888875 44444443 55555666666666899999999999999
Q ss_pred HHHhhccCCccEEEEecChHHHHHHh-hhcCCCCcceEEccCCCeeeecCCc---cccccccccccCccccCCHHHHHHH
Q 001536 568 INVLVDMGSAERQVLVRDYDVGKAVA-FEQRISNLKEVYTLDGHKMFSRGSV---QTILPLNRRLRTGRLCGSYDEKIKD 643 (1058)
Q Consensus 568 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~ 643 (1058)
.++|++...+...+++++-..+..+. ....+.++..+++++|...+.+|.. .++.+.... ++..........+..
T Consensus 587 ~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r-~~~~~~~s~d~~ie~ 665 (1074)
T KOG0250|consen 587 LNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRAR-RPGVDEFSFDDEIED 665 (1074)
T ss_pred HHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCC-CccccchhHhHHHHH
Confidence 99999999999999999955555444 4444667889999999877666552 111111111 233445567888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchhHHHHHH
Q 001536 644 LERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEI 723 (1058)
Q Consensus 644 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~ 723 (1058)
++.++..++.++..+......++..+..++..+..+...+...+..+.....++.++++..+. .......++++..++
T Consensus 666 le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~--~~~~~~~~~~l~~ei 743 (1074)
T KOG0250|consen 666 LEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEE--KQVDISKLEDLAREI 743 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhcchhhhHHHHHHH
Confidence 999999999988888888888888888888888888888888888888888888888873111 001235567777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 001536 724 SNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTR 803 (1058)
Q Consensus 724 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1058)
.....++......+..++..+..+......+..........+......+..+..++......+.........++..+ ..
T Consensus 744 ~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~-K~ 822 (1074)
T KOG0250|consen 744 KKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKL-KS 822 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHH-HH
Confidence 77788888888888888888888888888888888877777777777777777777766666666666666666555 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchh--hhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 001536 804 VVGAIKEAESQYRELELLRQDSCRKASVICPESE--IEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLY 881 (1058)
Q Consensus 804 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 881 (1058)
.-..+...+..+..+...+.+....+...|+... +..+ .....++...+.++...++..... ....+++-..+
T Consensus 823 ~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~----~~~~~eik~ei~rlk~~i~~~ee~-~~~~~e~~~~~ 897 (1074)
T KOG0250|consen 823 RLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEAL----GKTVAEIKREIKRLKRQIQMCEES-LGELEELHRGL 897 (1074)
T ss_pred hhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcc----cchHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHH
Confidence 4455666666776666666666666666776652 2222 235677888888888877765443 33333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCceeeEeeccccceeEEEEecCC
Q 001536 882 EEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQ 961 (1058)
Q Consensus 882 ~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~~~l~i~v~~~~ 961 (1058)
-.....+.....-...+.+.+..+...+..+|..|......+.-.....|..++...|+.|.+.+++.+..+++.|..|.
T Consensus 898 ~~~~~~~~k~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~sg~l~~~~e~ktl~i~v~~~~ 977 (1074)
T KOG0250|consen 898 HEARKELKKEDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFSGKLEFDHEEKTLSISVKLPT 977 (1074)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeecccccccchhhccCC
Confidence 33333333333333336888888889999999999999999999999999999999999999999999999999995554
Q ss_pred CCCCCcccCCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 962 DASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 962 ~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
....+.+.++..|||||||++++||+||||.++.|||++|||+||+||.+||..++++|++++...++|||||||+++.+
T Consensus 978 ~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~ 1057 (1074)
T KOG0250|consen 978 SGNEKAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISK 1057 (1074)
T ss_pred CCcccccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhh
Confidence 44446688999999999999999999999999999999999999999999999999999999987779999999999999
Q ss_pred CCCCCCeeEEecCCCCC
Q 001536 1042 VKQGERIKKQQMAAPRP 1058 (1058)
Q Consensus 1042 ~~~~~~~~v~~~~~~~~ 1058 (1058)
+..+++|+|++|++|+.
T Consensus 1058 l~~~~~i~v~rm~~pe~ 1074 (1074)
T KOG0250|consen 1058 LNSDDGIVVFRMSDPER 1074 (1074)
T ss_pred hccccceEEeeccCCCC
Confidence 99999999999999985
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.5e-82 Score=760.49 Aligned_cols=998 Identities=21% Similarity=0.318 Sum_probs=589.8
Q ss_pred eeEEEEEEEecccccC-ceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCce------eEE
Q 001536 20 GTITRVRLENFMCHSS-LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSY------AMV 92 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~-~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~------~~v 92 (1058)
|+|++|++.||+||.+ ++|+|+||+|+|+||||||||+|+|||+||||..+.+.+|++++.|+|+.|... |.|
T Consensus 1 m~lk~i~l~gFKSF~~~~~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V 80 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEV 80 (1163)
T ss_pred CeeeEEEEECcccCCCCeeeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceEE
Confidence 8899999999999954 788999999999999999999999999999999999999999999999988876 999
Q ss_pred EEEEEeCCCCccCcccCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhhh
Q 001536 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1058)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1058)
+|+|+|.+ .+.|..++ +++|+|++. +|.+.|+| ||+.+ +.+++.+++...|++..++ ++++||++..|+.
T Consensus 81 ~l~fdN~d--~~~~~~~~-ei~v~Rri~r~g~S~Y~I---Ng~~~--~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~ 151 (1163)
T COG1196 81 ELTFDNSD--NTLPLEYE-EISVTRRIYRDGESEYYI---NGEKV--RLKDIQDLLADSGIGKESY-SIVSQGKVEEIIN 151 (1163)
T ss_pred EEEEeCCC--CcCCcccc-eEEEEEEEEEcCCcEEEE---CCcEe--eHHHHHHHHHhcCCCCCCC-ceeecccHHHHHc
Confidence 99999986 44555555 789999998 77889999 68777 4579999999999999988 9999999999998
Q ss_pred cCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q 001536 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLA 251 (1058)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1058)
+++ .++..++..+.+...+..........+......+..+...+..+..+++.|+.+.+...++..+..++..++..+.
T Consensus 152 ~kp-~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 152 AKP-EERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230 (1163)
T ss_pred CCH-HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 866 4666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001536 252 WSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKE 331 (1058)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (1058)
+.++.....++..+...+..++..+..+...+......+..+...+.++...+.........+...+..+...+..+...
T Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 310 (1163)
T COG1196 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777777777777766666666666666655555555544444333222222222222222222111
Q ss_pred HHHH--------------HHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------HhhHHH------
Q 001536 332 KLEL--------------EGELVRNTSYMQKM-------VNRVKGLEQQVHDIQEQHV----------RNTQAE------ 374 (1058)
Q Consensus 332 ~~~~--------------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----------~~~~~~------ 374 (1058)
+..+ ...+......+... ......+............ ......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1163)
T COG1196 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 1111 11111111111111 1111111110110000000 001111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHHHHHHHHHH
Q 001536 375 -ESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIR-------RISDEI-------EDYDKKCREIRSEIR 439 (1058)
Q Consensus 375 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~l~~~~-------~~~~~~~~~l~~~~~ 439 (1058)
...+..++..+..+++.+..++..+...+..+..++..+..++. .+..++ ..+...+..+...+.
T Consensus 391 ~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 470 (1163)
T COG1196 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333333333332222222222222222222111111 111111 111111111111111
Q ss_pred HHHHhcCCccc----------ccC--cccHHHHHHHHHhhccCCCCCCcccccccEEecCCCChHHHHHHHHhcccccee
Q 001536 440 ELQQHQTNKVT----------AFG--GDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFI 507 (1058)
Q Consensus 440 ~l~~~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 507 (1058)
.+......... .+. ..........+...... .+|++|++++++.+. +.|..|++.++|+.+.++|
T Consensus 471 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~Gv~G~v~~li~v~--~~y~~Aie~alG~~l~~vV 547 (1163)
T COG1196 471 ELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG-LPGVYGPVAELIKVK--EKYETALEAALGNRLQAVV 547 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcc-CCCccchHHHhcCcC--hHHHHHHHHHcccccCCee
Confidence 11111000000 000 00000011111111222 357899999999985 6999999999999999999
Q ss_pred ecchhhHHHHHHHHHHhcCCCccEEEEecCCCCCCCCCCCCCCCCCCchhhccccCc---HHHHHHhhccCCccEEEEec
Q 001536 508 VTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDN---PTVINVLVDMGSAERQVLVR 584 (1058)
Q Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~l~~~~~~~~~~~~~ 584 (1058)
|++..++..+..+++....++.+|+|++...+....+... .++.++.+++.+..++ +.+..++ +.+++|.
T Consensus 548 V~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~-~~g~~~~a~dli~~d~~~~~~~~~~l------~~t~Iv~ 620 (1163)
T COG1196 548 VENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA-APGFLGLASDLIDFDPKYEPAVRFVL------GDTLVVD 620 (1163)
T ss_pred eCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc-ccchhHHHHHHhcCCHHHHHHHHHHh------CCeEEec
Confidence 9999999999999999999999999988766444332222 2233444556666665 3344444 3588999
Q ss_pred ChHHHHHHhhhcCCCCcceEEccCCCeeeecCCccccccccccc-cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 585 DYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRL-RTGRLCGSYDEKIKDLERAALHVQEEAQQCRKRKR 663 (1058)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~l~~~l~~~~~~~~~l~~~~~ 663 (1058)
+...+..+.......+ +++|++|.++.++|..+++....... .....+..+..++..+...+..+...+..+...+.
T Consensus 621 ~l~~A~~l~~~~~~~~--riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 698 (1163)
T COG1196 621 DLEQARRLARKLRIKY--RIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELR 698 (1163)
T ss_pred CHHHHHHHHHhcCCCc--eEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887654333 89999999988888776662221110 00000002233333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHH--
Q 001536 664 DSEERLQDLQQHQQNVKRR-------CFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKE-- 734 (1058)
Q Consensus 664 ~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-- 734 (1058)
.+...+..+......+... +..+..+...+...+..+..++.. +...+..+..++..+...+..+.
T Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (1163)
T COG1196 699 SLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEE-----LEEELEELQERLEELEEELESLEEA 773 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322222222222 221112222222222222111111 11111111111111111111111
Q ss_pred -------------------HHHHHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHH-------H
Q 001536 735 -------------------IILEKLQFSMNEAE--------------AKVEDLKLSFQSLCESAKEEVDTFE-------A 774 (1058)
Q Consensus 735 -------------------~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 774 (1058)
..+..+...+.... .....+..++..+......+...+. .
T Consensus 774 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~ 853 (1163)
T COG1196 774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEE 853 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11111111111111 1111111111111111111111111 1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---------chhhh
Q 001536 775 AEKELMEIEKNLQTSESEKAHYEDVMR------TRVVGAIKEAESQYRELELLRQDSCRKASVICP---------ESEIE 839 (1058)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~ 839 (1058)
+...+..+...+..+...+..+...+. ..+...+..+...+..+...+..+.......+. .....
T Consensus 854 ~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 933 (1163)
T COG1196 854 LEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEE 933 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111111111122222222222210 222222222222222222222222111111000 00000
Q ss_pred hcCCCCCCCHH-HHHHHHHHHHHHHHH---HhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 840 ALGGWDGSTPE-QLSAQVNRLNQRLKH---ESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGK 915 (1058)
Q Consensus 840 ~~~~~~~~~~~-~l~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~ 915 (1058)
.+......... .++..+..++..+.. +|..+.++|+++..+|+.+..++.++......+.+.|..++.. ....
T Consensus 934 ~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~---~~~~ 1010 (1163)
T COG1196 934 ELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE---KRER 1010 (1163)
T ss_pred hhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 01111122222 577777777777443 5666778899999999999999999999999999999777643 3446
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCceeeEeeccccc----eeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhh
Q 001536 916 FQRNATLLKRQLTWQFNGHLGKKGISGKININYEEK----TLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALH 991 (1058)
Q Consensus 916 ~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~~----~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~ 991 (1058)
|...|..+...|+..|..+|+ |+.|++.++.+++ |+.|.|.| ||+.+.+++.||||||+++||||+||+|
T Consensus 1011 f~~~f~~In~~F~~if~~L~~--GG~a~L~l~~~dd~l~~Giei~a~p----pgK~~~~l~~LSGGEKsLtAlAllFAi~ 1084 (1163)
T COG1196 1011 FKETFDKINENFSEIFKELFG--GGTAELELTEPDDPLTAGIEISARP----PGKKLQSLSLLSGGEKSLTALALLFAIQ 1084 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CCeeEEEeCCCCchhhcCcEEEEEC----CCCCccchhhcCCcHHHHHHHHHHHHHH
Confidence 888899999999999999888 8889988865444 78888887 5666778999999999999999999999
Q ss_pred hhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEecCC
Q 001536 992 EMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQMAA 1055 (1058)
Q Consensus 992 ~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~~~ 1055 (1058)
.++|+|||||||||++||..|+..++.+|.+++ .++|||||||++.+|..++..++|+..+.
T Consensus 1085 ~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~~~m~~ad~l~GVtm~~~ 1146 (1163)
T COG1196 1085 KYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRKGTMEAADRLVGVTMQEK 1146 (1163)
T ss_pred hhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcChHHHHHHHHHeeeEeecC
Confidence 999999999999999999999999999999988 99999999999998888888889876653
No 3
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=2.3e-73 Score=604.67 Aligned_cols=966 Identities=19% Similarity=0.265 Sum_probs=569.9
Q ss_pred CCCCCeeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEE
Q 001536 15 QRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEV 94 (1058)
Q Consensus 15 ~~~~~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~ 94 (1058)
+.++.|.|.+|+++||.+|+..++.|+|.+|+|+||||||||||++||+.||||+|...||+.++..||+.|++.|+|+|
T Consensus 15 ~sf~~GsIvrI~l~NF~Ty~~~e~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~g~IEI 94 (1072)
T KOG0979|consen 15 SSFPDGSIVRIELHNFLTYDHTEFLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDEGYIEI 94 (1072)
T ss_pred ccCCCCceEEEEEeeeeeeeeeeecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCccceEEE
Confidence 44778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCcccCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhhhcC
Q 001536 95 ELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSG 173 (1058)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~ 173 (1058)
++.+.+ +.++|+|.+. ++.+.|+|| |..+ +.+.+.+++..|+++++|+|.|+||+++..|....
T Consensus 95 ~l~~~~----------e~~~ItR~I~~~k~S~y~iN---~~a~--t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~ 159 (1072)
T KOG0979|consen 95 ELKDKD----------ETLTITRLISRDKESKYFIN---DSAT--TKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLS 159 (1072)
T ss_pred EEecCC----------CceEEEEEEeecCCcceeec---cchh--hhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCC
Confidence 999873 4689999999 777999994 5544 55899999999999999999999999999999885
Q ss_pred CchhHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 001536 174 NDKDKFKFFFKA---TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKL 250 (1058)
Q Consensus 174 ~~~~~~~~~~~~---~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1058)
+ ...+.....+ ..+......|..++++...+...+......+..++.+++.+...++.+.+.......++-+....
T Consensus 160 p-i~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~ 238 (1072)
T KOG0979|consen 160 P-IELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKK 238 (1072)
T ss_pred h-HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 3444333333 33556667777788888888888888888999999999999999999888888888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001536 251 AWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATK 330 (1058)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (1058)
.|..+.....++.........+...+..+.+....+......++.+..+...++......+......+...-..+.....
T Consensus 239 ~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~ 318 (1072)
T KOG0979|consen 239 KWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIED 318 (1072)
T ss_pred cccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777777777777777766666666666666666666666666665555555555555555555555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 001536 331 EKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRN-----TQAEESEIEAKLKELQCEIDAANITLSRMKEEDSA 405 (1058)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 405 (1058)
.+.....++..++..-......+....+.+.+++..+... ...+..++..++.+.... .+....+.++
T Consensus 319 ~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~------~~~~~~~~id- 391 (1072)
T KOG0979|consen 319 EVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSS------KLRDSRQEID- 391 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhh------hhhhhhhhhh-
Confidence 5555555555555555555555555544444444333111 111111111111111100 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccHHHHHHHHHhhccCCCCCCcccccccEEe
Q 001536 406 LSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTL 485 (1058)
Q Consensus 406 l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 485 (1058)
.. ........++.....++........ +........+. +++..+..|+..+...|..++++|+..-+.+
T Consensus 392 --~~-----~~~~~~~~~l~~~kr~~~~~~~~~~---~k~~~~l~~~~-~d~~dAy~wlrenr~~FK~~vyeP~~m~l~~ 460 (1072)
T KOG0979|consen 392 --AE-----QLKSQKLRDLENKKRKLKQNSDLNR---QKRYRVLRQGS-SDAYDAYQWLRENRSEFKDEVYEPPIMTLNV 460 (1072)
T ss_pred --HH-----HHHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHhccCc-hHHHHHHHHHHHCHHHhcccccCCceEEEec
Confidence 00 0000000111111111111111110 00000111122 6778889999999988999999998888888
Q ss_pred cCCCChHHHHHHHHhc-cccceeecchhhHHHHHHHHHHhcCCCccE--EEEecCCCC--CCCCCCCCCCCCCCchhhcc
Q 001536 486 VNGDTWAPAVEQAIGR-LLNAFIVTDHKDALLLRGCAREANYNHLQI--IIYDFSRPR--LSLPHHMLPHTKHPTTLSVL 560 (1058)
Q Consensus 486 ~~~~~~~~~~~~~l~~-~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~l~~l 560 (1058)
++ ..++.+++..+|. .+.+|+|.+.++...+.+.+.......... ++.+...+. ++.+...+...++.+++..+
T Consensus 461 k~-~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyls~f 539 (1072)
T KOG0979|consen 461 KN-AEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWRVNASEVIPREKKYADKIPAQSREELKRLGFEGYLSNF 539 (1072)
T ss_pred CC-hHHHHHHHcccCccccceeeeechHHHHHHHHHhhhcceeeeceeccccccccccCCCccCHHHHHhcChHHHhhhh
Confidence 88 9999999999984 778899999999988888777631111111 111111110 11112222336778888887
Q ss_pred ccCcHHHHHHhhccCCccEEEEecCh-HHHH-HHhhhcCCCCcceEEccCCCeee---ecCCccccccccccc-------
Q 001536 561 QSDNPTVINVLVDMGSAERQVLVRDY-DVGK-AVAFEQRISNLKEVYTLDGHKMF---SRGSVQTILPLNRRL------- 628 (1058)
Q Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~------- 628 (1058)
...+.++..+||....++.+.+...- ..+. .+.. ...+++|.++- ..|+.........+.
T Consensus 540 ~~~p~~vm~~Lc~~~~ih~IPvs~~~~~e~~~~~~~--------~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~~~ 611 (1072)
T KOG0979|consen 540 IEAPEPVMSYLCNVSKIHRIPVSKREVEEAIVEVLQ--------NIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVITR 611 (1072)
T ss_pred hcCcHHHHHHHHHhccccccccCcccccHHHHHHHh--------ccccCCCchhHHHHhhcCchhhhhhhccccceeeec
Confidence 77888999999988777765443221 1111 1111 11112221110 001000000000000
Q ss_pred ----cCccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 629 ----RTGRL---CGSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVK 701 (1058)
Q Consensus 629 ----~~~~~---~~~l~~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 701 (1058)
....+ ...++......+.++..+..++......+..++.+.......+......+..+..+...+...+..++
T Consensus 612 ~~~lk~~~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~ 691 (1072)
T KOG0979|consen 612 NDPLKSRNFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQ 691 (1072)
T ss_pred CCcchhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 00000 00122222223333333333333333333333333333333333333333333333333322222222
Q ss_pred hhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHH---HHHHHHHHHHHH
Q 001536 702 NSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQS---LCE---SAKEEVDTFEAA 775 (1058)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~ 775 (1058)
..... ++.+...+.....++........ ....... +..+...++. ... ....-...+...
T Consensus 692 ~r~~~---------ie~~~~~l~~qkee~~~~~~~~I---~~~~~~~--~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s 757 (1072)
T KOG0979|consen 692 QRKER---------IENLVVDLDRQEEEYAASEAKKI---LDTEDMR--IQSIRWHLELTDKHKEIGIKEKNESSYMARS 757 (1072)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 21111 11111111111111111100000 0000000 0000000000 000 000000000000
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHh----hCC------c---hhhhh
Q 001536 776 EKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRK--ASV----ICP------E---SEIEA 840 (1058)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~----~~~------~---~~~~~ 840 (1058)
....-+++..+..+...+..++ +..+.+...++...........+ ... ... . .....
T Consensus 758 ~~~~iea~~~i~~~e~~i~~~~--------~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e 829 (1072)
T KOG0979|consen 758 NKNNIEAERKIEKLEDNISFLE--------AREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKE 829 (1072)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHH
Confidence 0000011111111111111111 11122222222222222111110 000 000 0 00000
Q ss_pred cCCCCCCCHHHHHHHHHHHHH-HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 841 LGGWDGSTPEQLSAQVNRLNQ-RLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRN 919 (1058)
Q Consensus 841 ~~~~~~~~~~~l~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 919 (1058)
+... +.++.++...|..-.. .+. +....+.+.++|+..+.++..+...+......++.+...+....+.|...
T Consensus 830 ~~e~-p~t~~eld~~I~~e~t~~~~-----~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~ 903 (1072)
T KOG0979|consen 830 LAEE-PTTMDELDQAITDELTRALK-----FENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPK 903 (1072)
T ss_pred HHhC-CCcHHHHHHHHHHHHHHHHH-----HhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHH
Confidence 1111 4566666666554443 222 22233446777777777777777777777777777777777777788888
Q ss_pred HHHHHHHHHHHHHHhhhccCceeeEee-----ccccceeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhhhhc
Q 001536 920 ATLLKRQLTWQFNGHLGKKGISGKINI-----NYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMT 994 (1058)
Q Consensus 920 ~~~~~~~~~~~f~~~~~~~~~~g~~~~-----~~~~~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~~ 994 (1058)
+..+...++..|..+|..+|+.|+|.+ |+..|+|.|.|+|+...+...+ +.+.+||||||++++.|++||+..+
T Consensus 904 le~~V~~In~~Fs~~F~~mg~aGeV~L~~~~~DydkwgI~ImVkFR~s~~L~~L-~sh~QSGGERSVSTiLYLlALQ~l~ 982 (1072)
T KOG0979|consen 904 LEEMVEQINERFSQLFSSMGCAGEVSLEVNPLDYDKWGIMIMVKFRDSEGLKVL-DSHRQSGGERSVSTILYLLALQELT 982 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhcccCceEEeccCcccHhHhceEEEEEEccCcccccc-cccccCCcchHHHHHHHHHHHhhcc
Confidence 888888889999999999999999987 4778999999999987666666 6777899999999999999999999
Q ss_pred CCCeeeechhhhccChhhHHHHHHHHHHHHh-cCCcEEEEEccCCCCCCCCCCCeeEEe
Q 001536 995 EAPFRAMDEFDVFMDAISRKISLDTLVDFAL-AQGSQWIFITPHDVGLVKQGERIKKQQ 1052 (1058)
Q Consensus 995 ~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~-~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1052 (1058)
+|||+|+|||++|||+.|.+.|++.|+..+| ...+|||+|||+-.+...++..++|+=
T Consensus 983 ~~PFRvVDEINQGMDp~NER~Vh~~mV~~ac~entsQyFliTPKLLpgL~Ysenm~Il~ 1041 (1072)
T KOG0979|consen 983 PAPFRVVDEINQGMDPRNERKVHDIMVNMACKENTSQYFLITPKLLPGLDYSENMKILC 1041 (1072)
T ss_pred CCCeeehhhhhcCCCchhHHHHHHHHHHHhhcCCCcceEEecchhcCCCChhhcceEEE
Confidence 9999999999999999999999999999998 456999999999998899999887764
No 4
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-70 Score=590.20 Aligned_cols=1014 Identities=17% Similarity=0.248 Sum_probs=522.1
Q ss_pred CCCCCeeEEEEEEEecccccC-cee-eeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCc----
Q 001536 15 QRSGAGTITRVRLENFMCHSS-LQI-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS---- 88 (1058)
Q Consensus 15 ~~~~~m~i~~l~l~nf~~~~~-~~i-~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~---- 88 (1058)
+.+|++.|..|.+.||+||.+ +.| +|++.|+.|+||||||||+++||+.|+||+++.+ .|.++++.+|+.+..
T Consensus 79 ~~~~RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~k-iR~~klS~LIh~S~~~~~l 157 (1293)
T KOG0996|consen 79 AGGPRLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASK-IRSKKLSALIHKSDGHPNL 157 (1293)
T ss_pred CCCCeeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhH-HhHHHHHHHHhccCCCCCC
Confidence 446779999999999999954 555 9999999999999999999999999999999987 688999999985543
Q ss_pred -eeEEEEEEEeC---CCCccCcccCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeech
Q 001536 89 -YAMVEVELKNR---GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQ 163 (1058)
Q Consensus 89 -~~~v~~~~~~~---~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 163 (1058)
.|.|+|+|.-- +.+.| -.++|..++|+|+.. ++.+.|+| ||+.. +.+++..++..-||+.+..-|++=|
T Consensus 158 ~SCsV~vhFq~iiD~~~~~~-E~vp~s~~~ItRtA~~~NsSkY~I---ngk~a--s~~~V~~lLk~~gIDleHNRFLILQ 231 (1293)
T KOG0996|consen 158 QSCSVEVHFQKIIDKPGGTY-EVVPDSEFTITRTAFRDNSSKYYI---NGKEA--SFKDVTKLLKSHGIDLEHNRFLILQ 231 (1293)
T ss_pred cceeEEEeeeeeeccCCCce-eecCCCeeEEEehhhhCCCceEeE---CCccc--cHHHHHHHHHhcCCCCccceeeeeh
Confidence 49999999852 22222 345677899999999 88899999 67766 4589999999999999999999999
Q ss_pred hhhhHhhhcCC------chhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHH
Q 001536 164 DKSREFLHSGN------DKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVE 237 (1058)
Q Consensus 164 ~~~~~~l~~~~------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (1058)
|.+..+..+++ +...++.+-...+...+..-+.....++..+.....+....++-...+...++......-.+.
T Consensus 232 GEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL 311 (1293)
T KOG0996|consen 232 GEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFL 311 (1293)
T ss_pred hhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99998877754 233444444433333333444444444555555554444444444444444444444333222
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHH-----------------------------HHHhHHHHHH
Q 001536 238 EITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPR-----------------------------CQAKIDSRHS 288 (1058)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 288 (1058)
....++..++..+....+.....++......+..+...+.. +......+..
T Consensus 312 ~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~ 391 (1293)
T KOG0996|consen 312 KKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKK 391 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222211112222222222222221111111 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 289 ILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHV 368 (1058)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1058)
.+..++.+-...+..+..+...+..++.+++.......++..........+.....++.++.......+.++.+....+.
T Consensus 392 ~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~ 471 (1293)
T KOG0996|consen 392 KFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLK 471 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222211111222222222222222222222222222222211222222222222222222222222222222111110
Q ss_pred Hh----------hH---------------------HHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 001536 369 RN----------TQ---------------------AEESEI-------EAKLKELQCEIDAANITLSRMKEEDSALSEKL 410 (1058)
Q Consensus 369 ~~----------~~---------------------~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 410 (1058)
.. .+ .++..+ ...+..++..+......+.+....+..+...+
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l 551 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL 551 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 00 011111 11111111111111111111222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-cccHHHHHHHHHhh--ccCCCCCCcccccccEEecC
Q 001536 411 SKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFG-GDRVISLLRAIERH--HHKFKSPPIGPIGSHVTLVN 487 (1058)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~ 487 (1058)
..+..++.+...++..+..+...+...+..+.+.....-.... ...-..++..+... .|++ ++++|.++++-.+ +
T Consensus 552 ~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i-~Gf~GRLGDLg~I-d 629 (1293)
T KOG0996|consen 552 PSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRI-PGFYGRLGDLGAI-D 629 (1293)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCC-Ccccccccccccc-c
Confidence 2222222222222222222222222222222211100000000 01111233333321 2333 5688999988877 5
Q ss_pred CCChHHHHHHHHhccccceeecchhhHHHHHHHHHHhcCCCccEEEEecCCCCCCCCCCCCCCCCCCchhhccccCcHHH
Q 001536 488 GDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTV 567 (1058)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 567 (1058)
++|..||.. ++..+..+||++.+++..+..+++..+.++.+|++++.......--.+..++..+|.+.+.+.+.++.+
T Consensus 630 -~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~ 707 (1293)
T KOG0996|consen 630 -EKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKF 707 (1293)
T ss_pred -hHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHH
Confidence 899999999 566689999999999999999999999999999999865422211111233456777888888887666
Q ss_pred HHHhhccCCccEEEEecChHHHHHHhhhcCCCCcceEEccCCCeeeecCCccccccccccccCcc---c-------cCCH
Q 001536 568 INVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGR---L-------CGSY 637 (1058)
Q Consensus 568 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~l 637 (1058)
...+.. .+.+++++++++.+..+++....++ +++|++|.++..+|.+++++......+-+. . ...+
T Consensus 708 r~aFYf--aLrdtLV~d~LeQAtRiaygk~rr~--RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~l 783 (1293)
T KOG0996|consen 708 RPAFYF--ALRDTLVADNLEQATRIAYGKDRRW--RVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKL 783 (1293)
T ss_pred HHHHHH--HHhhhhhhcCHHHHHHHhhcCCCce--EEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHH
Confidence 655442 2456889999999999998776544 799999999888877766543221111000 0 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchh
Q 001536 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVD 717 (1058)
Q Consensus 638 ~~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 717 (1058)
+.++........++..++..+......+......++..+..+......+...+..+..++..++...... ......+.
T Consensus 784 e~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~--~~d~~~l~ 861 (1293)
T KOG0996|consen 784 ERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKK--VVDKKRLK 861 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCcHHHHH
Confidence 3334333333344444433344444444333333333333333333333333333333333333321110 00011122
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH----------------------HHH--------------HHHHH
Q 001536 718 EISQEISNIQEEIQEK------EIILEKLQFSMNEA----------------------EAK--------------VEDLK 755 (1058)
Q Consensus 718 ~l~~~~~~l~~~~~~~------~~~~~~l~~~~~~~----------------------~~~--------------~~~~~ 755 (1058)
.++..+..+..++..+ ..++..++..+..+ ... +..++
T Consensus 862 ~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q 941 (1293)
T KOG0996|consen 862 ELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQ 941 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHH
Confidence 2222222222222222 11222222222111 111 11122
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 001536 756 LSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCR-------K 828 (1058)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 828 (1058)
..+..+...+.....++..+...+..+.....++..++.+....+ .++...+..+...+........++.. .
T Consensus 942 ~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~-~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K 1020 (1293)
T KOG0996|consen 942 KKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESL-KEIKKELRDLKSELENIKKSENELKAERIDIENK 1020 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 222222222222222222233333333333333333333333333 23333333332222222222222111 1
Q ss_pred HHhh-----------------------CCchhhhhcCCCCCCCHHH---------HHHHHHHHHHHHHHH-h--hhcCCC
Q 001536 829 ASVI-----------------------CPESEIEALGGWDGSTPEQ---------LSAQVNRLNQRLKHE-S--HQYSES 873 (1058)
Q Consensus 829 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~---------l~~~l~~l~~~~~~~-~--~~~~~~ 873 (1058)
+... +...+.......+....++ +...+.-++.++... + -....+
T Consensus 1021 ~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~vd~~~i~e 1100 (1293)
T KOG0996|consen 1021 LEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREVDLGVIAE 1100 (1293)
T ss_pred HHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 0000 0000000000011111122 222344455555543 1 123345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCceeeEeecccccee
Q 001536 874 IEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTL 953 (1058)
Q Consensus 874 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~~~l 953 (1058)
|......|......+..........++.+..|. ..++..|...|.-|...+...|..+. +|+...+.+...-+++
T Consensus 1101 Y~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lr---k~RldEFm~gf~~Is~kLkemYQmIT--~GGdAeLElVDslDPF 1175 (1293)
T KOG0996|consen 1101 YAKKVELYLKRVAELEKFTQKRDEHREKLEELR---KRRLDEFMAGFNIISMKLKEMYQMIT--LGGDAELELVDSLDPF 1175 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcceeEeeccCCCc
Confidence 555555565555555555566666666665554 56778899999999999999999655 4888887764444444
Q ss_pred EEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEE
Q 001536 954 SIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIF 1033 (1058)
Q Consensus 954 ~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~ 1033 (1058)
+-+|.|...||.+.|..+..||||||++++|||.|||+.|.|+|||||||||++||-.|..++.+.+.+-. .+.||||
T Consensus 1176 seGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT--kNAQFII 1253 (1293)
T KOG0996|consen 1176 SEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT--KNAQFII 1253 (1293)
T ss_pred ccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc--cCCeEEE
Confidence 43333333347788999999999999999999999999999999999999999999999999999998865 9999999
Q ss_pred EccCCCCCCCCCCC-eeEEecC
Q 001536 1034 ITPHDVGLVKQGER-IKKQQMA 1054 (1058)
Q Consensus 1034 iT~~~~~~~~~~~~-~~v~~~~ 1054 (1058)
||.+.. |+..+++ ++|||..
T Consensus 1254 ISLRnn-MFELa~rLvGIYKtd 1274 (1293)
T KOG0996|consen 1254 ISLRNN-MFELANRLVGIYKTD 1274 (1293)
T ss_pred EEehhh-HHHHHhhheeeEeec
Confidence 999984 8876665 8999864
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.2e-68 Score=563.09 Aligned_cols=987 Identities=16% Similarity=0.237 Sum_probs=552.3
Q ss_pred eeEEEEEEEecccccCc-ee-eeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCC----ceeEEE
Q 001536 20 GTITRVRLENFMCHSSL-QI-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC----SYAMVE 93 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~-~i-~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~----~~~~v~ 93 (1058)
|+|++|.|.||+||... .| +|+|.||+|+|-||||||+|||+|||+||-......|++++.++|+.+. ..|.|+
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 89999999999999544 44 9999999999999999999999999999999998899999999998666 789999
Q ss_pred EEEEeCCCCccCcc-cCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhhh
Q 001536 94 VELKNRGEDAFKPE-IFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1058)
Q Consensus 94 ~~~~~~~~~~~~~~-~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1058)
|+|+|.++..-.+. ...++|+|+|.+. +|.+.|+| ||+..+. ..+.+++.+.+++++||+|+++|+++...|.
T Consensus 81 VvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylI---NGh~a~~--~~vq~lF~SVqLNvNNP~FLIMQGrITkVLN 155 (1174)
T KOG0933|consen 81 VVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLI---NGHLAQN--SKVQDLFCSVQLNVNNPHFLIMQGRITKVLN 155 (1174)
T ss_pred EEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEE---cCeeCch--hHHHHHHHHhcccCCCCceEEecccchhhhc
Confidence 99999876422111 1246899999999 89999999 5776654 7999999999999999999999999999999
Q ss_pred cCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 001536 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK-PTEKELSELQRKIRNMEHVEEITQDLQRLKKKL 250 (1058)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1058)
+++. +.+-..-.+.+-..+...-..+..-+...+..+.+...-+. .+.-.+..++.+...+-++......++.+....
T Consensus 156 MKp~-EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ 234 (1174)
T KOG0933|consen 156 MKPS-EILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRIC 234 (1174)
T ss_pred CCcH-HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764 56666666766666666666666666666666666554433 234567778888888878888888888877777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhHHH--------
Q 001536 251 AWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIA--------VMVEKTSEV-------- 314 (1058)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-------- 314 (1058)
-..+|............++...+..+..+.+.......++..++.++.+++.+.. .+...+..+
T Consensus 235 ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~ 314 (1174)
T KOG0933|consen 235 IAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREE 314 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666555555555444221 111111111
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------------
Q 001536 315 ------RRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDI-------QEQHV------------- 368 (1058)
Q Consensus 315 ------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~------------- 368 (1058)
...+...+..+..+...+.+....+......+.........+.+...+. +..+.
T Consensus 315 t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e 394 (1174)
T KOG0933|consen 315 TSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEE 394 (1174)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccch
Confidence 1111111222222222222222222222222222111111111111111 10000
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Q 001536 369 RNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQT-- 446 (1058)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~-- 446 (1058)
...+.++......+......+....-++..+..++.....+......+.......+...+..++.+..++..+.....
T Consensus 395 ~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~ 474 (1174)
T KOG0933|consen 395 KTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQE 474 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchH
Confidence 000111222222222222222222223333333333333333333333333333333334444444333332211100
Q ss_pred ----CcccccCcccHHHHHHHHHhhcc-------CCCCC--------CcccccccEEecCCCChHHHHHHHHhcccccee
Q 001536 447 ----NKVTAFGGDRVISLLRAIERHHH-------KFKSP--------PIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFI 507 (1058)
Q Consensus 447 ----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 507 (1058)
.....+. ..+..+.+.+..... .|..| +.|.++.++.+++ ..+..|++.+.|+.+.++|
T Consensus 475 e~l~q~~~~l~-~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd-~~~~tAle~~aGgrLynvV 552 (1174)
T KOG0933|consen 475 EALKQRRAKLH-EDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKD-RSYATALETTAGGRLYNVV 552 (1174)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCc-chHHHHHHHHhcCcceeEE
Confidence 0000000 111122222221111 12212 5688899999999 8999999999999999999
Q ss_pred ecchhhHHHHHHHHHHhcC-CCccEEEEecCCCCCCCCCC-----CCCCCCCCchhhccccCcHH--HHHHhhccCCccE
Q 001536 508 VTDHKDALLLRGCAREANY-NHLQIIIYDFSRPRLSLPHH-----MLPHTKHPTTLSVLQSDNPT--VINVLVDMGSAER 579 (1058)
Q Consensus 508 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~--~~~~l~~~~~~~~ 579 (1058)
|++..++..+.. +..+ .+++++|++........|.. .+...++...++.+..+... ++.+. .+.
T Consensus 553 v~te~tgkqLLq---~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefv-----FG~ 624 (1174)
T KOG0933|consen 553 VDTEDTGKQLLQ---RGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFV-----FGS 624 (1174)
T ss_pred eechHHHHHHhh---cccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHH-----hCc
Confidence 999988866543 1122 35677777643221111100 01123344445555544321 22222 456
Q ss_pred EEEecChHHHHHHhhhcCCCCcceEEccCCCeeeecCCccccccccccccCc--cccCCHHHHHHHHHHHHHHHHHHHHH
Q 001536 580 QVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTG--RLCGSYDEKIKDLERAALHVQEEAQQ 657 (1058)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~i~~l~~~l~~~~~~~~~ 657 (1058)
.++|++.+.+..+++...+.. +.+|++|+++.+.|..+++....+..... ..+..++.++...+.++..++.++..
T Consensus 625 tlVc~~~d~AKkVaf~~~i~~--rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~ 702 (1174)
T KOG0933|consen 625 TLVCDSLDVAKKVAFDPKIRT--RSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKS 702 (1174)
T ss_pred eEEecCHHHHHHhhccccccc--ceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999876543 67999999998888776654433210000 00011222333333333333333322
Q ss_pred HHHH----------HH--------------------------HHHHHHHHHHHHHHHHH-------HHHHHHH-------
Q 001536 658 CRKR----------KR--------------------------DSEERLQDLQQHQQNVK-------RRCFSAE------- 687 (1058)
Q Consensus 658 l~~~----------~~--------------------------~l~~~~~~~~~~~~~~~-------~~~~~~~------- 687 (1058)
++.. +. .+...+...+.++.... ..+..++
T Consensus 703 le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~ 782 (1174)
T KOG0933|consen 703 LEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK 782 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 2211 00 01111111111111111 1111111
Q ss_pred ----HHHHHHHHHHHHHHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001536 688 ----RNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCE 763 (1058)
Q Consensus 688 ----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 763 (1058)
.++..+..++..+....+. ........+.+...+.-+...++..+...+..+..+...++.+..++..+..
T Consensus 783 ~~re~rlkdl~keik~~k~~~e~-----~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~ 857 (1174)
T KOG0933|consen 783 ANRERRLKDLEKEIKTAKQRAEE-----SSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA 857 (1174)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222223222222222 2222222222333333333333333333333333333333333322222222
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001536 764 -------SAKEEVDTFEAAEKELMEIEKNL--------------QTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLR 822 (1058)
Q Consensus 764 -------~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 822 (1058)
........+......+.....++ ......+..+...+ ..+..+-......++.+..+.
T Consensus 858 kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~-~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 858 KVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEV-TKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHH-HHhhhhHHHHHHHHHHHHHhc
Confidence 22222222222222222222222 11222222222333 333333344444455555555
Q ss_pred HHHHHHHHhhCCchhhhhcCCCCCCCHHHHHHHHHHHHHHHHH----HhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 823 QDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKH----ESHQYSESIEDLRMLYEEKEHKILRKQQTYQAF 898 (1058)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 898 (1058)
.|+..+...+......+++...+ ..+-..++..++..... +++.+...++.++..+..+..+++.+..+...+
T Consensus 937 ~wi~~ek~~fgk~gt~yDf~~~~---p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI 1013 (1174)
T KOG0933|consen 937 EWIGDEKRLFGKKGTDYDFESYD---PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKI 1013 (1174)
T ss_pred cchhHHHHhhcCCCCccccccCC---HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 55554444444444444544443 33344444444443332 566777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCceeeEeecccc-----ceeEEEEecCCCCCCCccc-CCc
Q 001536 899 REKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEE-----KTLSIEVKMPQDASSSNVR-DTR 972 (1058)
Q Consensus 899 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~-----~~l~i~v~~~~~~~~~~~~-~~~ 972 (1058)
.+.|..+++.. .+.+...+..++..|..+|..++| |... .+.+.+ +|+++.|.+ |+.|. +..
T Consensus 1014 ~ktI~~lDe~k---~~~L~kaw~~VN~dFG~IFs~LLP--ga~A--kL~Ppeg~~~~dGLEvkV~~-----G~iWKeSL~ 1081 (1174)
T KOG0933|consen 1014 KKTIEKLDEKK---REELNKAWEKVNKDFGSIFSTLLP--GAMA--KLEPPEGKTVLDGLEVKVKF-----GGIWKESLS 1081 (1174)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHhCC--Cccc--cccCCCCCccccceEEEEEe-----CccHHHHHH
Confidence 99998777543 345666778888888899998888 3333 334443 358888986 56666 468
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.||||+||++||+|.||+..+.|.|||||||+|++||-.+-..+..+|..-+ .|.||||+|.+.. |+..++.+
T Consensus 1082 ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF--~~sQFIVVSLKeG-MF~NANvL 1154 (1174)
T KOG0933|consen 1082 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--THSQFIVVSLKEG-MFNNANVL 1154 (1174)
T ss_pred HhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC--CCCeEEEEEchhh-ccccchhh
Confidence 9999999999999999999999999999999999999987666666665444 8999999999985 88766653
No 6
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.9e-68 Score=555.45 Aligned_cols=988 Identities=16% Similarity=0.218 Sum_probs=530.0
Q ss_pred eeEEEEEEEecccccCcee--eeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCc----eeEEE
Q 001536 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAMVE 93 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i--~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~----~~~v~ 93 (1058)
|+|+.|.|.||++|.+.++ +|+|..|+|+|.||||||+++.||.|+|.+..+...| ..-..+++.|+. .|.|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~-E~R~gLlHEGsG~~V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKR-EERQGLLHEGSGAMVMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCH-HHHhhhhhcCCCcceEEEEEE
Confidence 8999999999999977655 6999999999999999999999999999887765433 333677887764 68999
Q ss_pred EEEEeCCCCccCcccCCCeEEEEEEEecCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhhhcC
Q 001536 94 VELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSG 173 (1058)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~ 173 (1058)
|+|.|.+.+.. ..+.+++|.|+++-.+..|++ |++.|+ ..++-.++...|++..||+++++|+++..+.. .
T Consensus 80 IvF~nsdnr~~---~~k~Ev~lrRtVGlKKDeY~l---D~k~Vt--k~evvnLLESAGFSrsNPYyIV~QGkI~~La~-a 150 (1200)
T KOG0964|consen 80 IVFDNSDNRLP---RGKSEVSLRRTVGLKKDEYFL---DNKMVT--KGEVVNLLESAGFSRSNPYYIVPQGKINELAN-A 150 (1200)
T ss_pred EEEeCcccccC---CCCCeEEEEEeecccchhhhc---cccccc--HHHHHHHHHhcCcccCCCceEeechhhHHhhc-C
Confidence 99999876522 356789999999988899999 788885 48999999999999999999999999998654 4
Q ss_pred CchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhH
Q 001536 174 NDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWS 253 (1058)
Q Consensus 174 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1058)
++..+++++....+..-........-.-+.+.......+..-+..++..+..+..+.+.++.+.++......++..+...
T Consensus 151 kD~eRL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdr 230 (1200)
T KOG0964|consen 151 KDSERLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDR 230 (1200)
T ss_pred CcHHHHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhh
Confidence 66788888887766544444433333333333333333444444445555555555555555555555544444444443
Q ss_pred HHHHHHHHHHHHHHHH----------------------------HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 254 WVYDVDRQLKEQTLKI----------------------------EKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIA 305 (1058)
Q Consensus 254 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (1058)
++.+...++..+.... ..++..+..+....+++..+..........++-++.
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 3333333333333322 222222222222222222121111111222222222
Q ss_pred HHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 001536 306 VMVEKT-------SEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVR--------- 369 (1058)
Q Consensus 306 ~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 369 (1058)
.++.++ ......+..+...+.+...++..+....+.+...-..+..++..++.+...+-.+..+
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~e 390 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEE 390 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHH
Confidence 222222 1112222333333333344444444444444444444444444444433322211100
Q ss_pred ------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH-------HHHHHHHHHHHH
Q 001536 370 ------------------------NTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSAL-------SEKLSKEKNEIR 418 (1058)
Q Consensus 370 ------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~ 418 (1058)
..+.++..++..+....+++..+...+.....++..+ ..++.++.....
T Consensus 391 RDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk 470 (1200)
T KOG0964|consen 391 RDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRK 470 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111222222222222222222222211111221 112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccHHHHHHHHHhhccCC-CCCCcccccccEEecCCCChHHHHHH
Q 001536 419 RISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKF-KSPPIGPIGSHVTLVNGDTWAPAVEQ 497 (1058)
Q Consensus 419 ~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 497 (1058)
.+..+-..++..+..+...+...+...... .+ +.+...+..+......+ ..+++|+++.++.|. +.|..|++.
T Consensus 471 ~lWREE~~l~~~i~~~~~dl~~~~~~L~~~---~~-r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~--~~f~tavEv 544 (1200)
T KOG0964|consen 471 ELWREEKKLRSLIANLEEDLSRAEKNLRAT---MN-RSVANGIDSVRKIKEELKPNGVFGTVYELIKVP--NKFKTAVEV 544 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc-chhhhhhHHHHHHHHHhcccccceehhhhhcCC--HHHHhHHhh
Confidence 222222222333333333333222222111 11 23333333333322222 357899999999984 699999999
Q ss_pred HHhccccceeecchhhHHHHHHHHHHhcCCCccEEEEecCCCCCCCCCCCCC-CCCCCchhhccccCcHHHHHHhhccCC
Q 001536 498 AIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLP-HTKHPTTLSVLQSDNPTVINVLVDMGS 576 (1058)
Q Consensus 498 ~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~l~~~~~ 576 (1058)
+.|+.++++||++.+.+..+...+...+.++++|.|++...+. ....| ..++-|++..|..++.. ..++. +.
T Consensus 545 taGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r----~v~yp~~sdaiPli~kl~y~p~f-dka~k--~V 617 (1200)
T KOG0964|consen 545 TAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKAR----DVEYPKDSDAIPLISKLRYEPQF-DKALK--HV 617 (1200)
T ss_pred hcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchh----hccCCCCCCccchHHHhCcchhh-HHHHH--HH
Confidence 9999999999999999998888887777799999998765432 11112 24556777777776532 11111 12
Q ss_pred ccEEEEecChHHHHHHhhhcCCCCcceEEccCCCeeeecCCcccccccccccc--CccccCCHHHHHHHHHHHHHHHHHH
Q 001536 577 AERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLR--TGRLCGSYDEKIKDLERAALHVQEE 654 (1058)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~i~~l~~~l~~~~~~ 654 (1058)
.+++++|.++..+...+....+ .++|++|..++..|..+++.......+ ...-......++.+|+..+..++..
T Consensus 618 fgktivcrdl~qa~~~ak~~~l----n~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~ 693 (1200)
T KOG0964|consen 618 FGKTIVCRDLEQALRLAKKHEL----NCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNE 693 (1200)
T ss_pred hCceEEeccHHHHHHHHHhcCC----CeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999988877655 789999999888887766554321111 0000112344555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hc----------CCC
Q 001536 655 AQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFA--------------AD----------AGP 710 (1058)
Q Consensus 655 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------------~~----------~~~ 710 (1058)
++....++..+...++.++.........+..+..++..+..+...++..+. .. ...
T Consensus 694 i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~s 773 (1200)
T KOG0964|consen 694 IEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGS 773 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Confidence 555555555544444444444433333333333333332222222111111 00 000
Q ss_pred CCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHH------------HHHHHH
Q 001536 711 PSASAV-DEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKL--------SFQSLCE------------SAKEEV 769 (1058)
Q Consensus 711 ~~~~~~-~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~------------~~~~~~ 769 (1058)
.+..++ .+-.+++..+..++..+..++..+......+...+..++. ..+.+.. .+....
T Consensus 774 el~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~ 853 (1200)
T KOG0964|consen 774 ELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEK 853 (1200)
T ss_pred HHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHH
Confidence 000000 0011222222222333322222222211111111111111 1111111 111112
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH
Q 001536 770 DTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGA--------------------IKEAESQYRELELLRQDSCRKA 829 (1058)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~ 829 (1058)
.++......+.....++..+...+......+ .+.... ...+......|.....+++..+
T Consensus 854 ~el~~~~~~~e~~~~el~~l~~~i~~~~a~~-~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~KreE~~ekI 932 (1200)
T KOG0964|consen 854 SELESEEKRVEAAILELKTLQDSIDKKKAEI-KEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKKREECCEKI 932 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222222222211111 111000 1111111111112222233332
Q ss_pred HhhCCchhhhhcCCCCCCCHHHHHHHHHHHHHHHHH---HhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 830 SVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKH---ESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACR 906 (1058)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~ 906 (1058)
..++..+ ...|..+......++..++.+...+++. +|..+.++|.....+.+.+..+..++......+.+.+..|+
T Consensus 933 r~lG~Lp-~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLd 1011 (1200)
T KOG0964|consen 933 RELGVLP-EDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLD 1011 (1200)
T ss_pred HhcCCCc-hHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 2222111 1112223355677888888888877765 45666667777777777777777777666666666665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCceeeEee--------------cccc------------ceeEEEEecC
Q 001536 907 EALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKINI--------------NYEE------------KTLSIEVKMP 960 (1058)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~--------------~~~~------------~~l~i~v~~~ 960 (1058)
. ..++.+...|..+.+.|+..|..+.+ |+.|.+.. ++.. .|+.|.|.|+
T Consensus 1012 q---rK~eai~~TFkqV~knFsevF~~LVp--~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI~VSFn 1086 (1200)
T KOG0964|consen 1012 Q---RKYEAIDLTFKQVKKNFSEVFSRLVP--GGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISIKVSFN 1086 (1200)
T ss_pred H---hhHHHHHHHHHHHHHHHHHHHHHhCC--CCceeehhhccccccccccccccccccccccccchhhccceeEEEEee
Confidence 3 23457778889999999999999888 55552221 1111 3578888887
Q ss_pred CCCCCCcccCCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCC
Q 001536 961 QDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1040 (1058)
Q Consensus 961 ~~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1040 (1058)
++. +....+..||||+|+++||||.||++.|+|.||++|||||++||...|+.+.+++.+++ .++|||+-|.+|.
T Consensus 1087 skq--~E~~~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS--~~aQFI~TTFRpE- 1161 (1200)
T KOG0964|consen 1087 SKQ--GETLEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELS--DSAQFITTTFRPE- 1161 (1200)
T ss_pred cCc--cHHHHHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHh--hccceEeecccHH-
Confidence 542 35557889999999999999999999999999999999999999999999999999998 8899999999995
Q ss_pred CCCCCC
Q 001536 1041 LVKQGE 1046 (1058)
Q Consensus 1041 ~~~~~~ 1046 (1058)
|+..++
T Consensus 1162 ll~vAd 1167 (1200)
T KOG0964|consen 1162 LLSVAD 1167 (1200)
T ss_pred HHHHHH
Confidence 555443
No 7
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-67 Score=564.31 Aligned_cols=983 Identities=16% Similarity=0.211 Sum_probs=570.3
Q ss_pred CeeEEEEEEEecccccCc-ee-eeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEE
Q 001536 19 AGTITRVRLENFMCHSSL-QI-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (1058)
Q Consensus 19 ~m~i~~l~l~nf~~~~~~-~i-~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~ 96 (1058)
||+|..|+|.||+||.++ .| +|+ .||.|+||||||||++||||.||||..++. +|++.+.++|+.-+..+.|.+.|
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGekss~-LR~~~lkdLIyg~~i~~~v~l~Y 78 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKSSH-LRVSHLKDLIYGKPIRKPVTLKY 78 (1141)
T ss_pred CCceeeeehhccccccCceeecCch-hceeeeCCCCCchHHHHHHHHHHhcCCCcc-cccchHHHHhcCCccCCchhhee
Confidence 589999999999999554 56 555 799999999999999999999999999987 79999999999555566777666
Q ss_pred EeCCCCccCcccCCCeEEEEEEEecCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhhhcCCch
Q 001536 97 KNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDK 176 (1058)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 176 (1058)
..+ .|....++|.+.+|+++|.| ||..++. .++...+..+||-+....|++-|+.+.... ...+.
T Consensus 79 ~~~---------dg~~~~F~R~I~~G~seY~I---Dne~VT~--eeY~~eLekinIlVkARNFLVFQGdVE~IA-~k~Pk 143 (1141)
T KOG0018|consen 79 EEG---------DGETRRFTRAINGGTSEYMI---DNEIVTR--EEYLEELEKINILVKARNFLVFQGDVEKIA-GKNPK 143 (1141)
T ss_pred ecC---------CchhhhhhhhhcCCceeEEE---cceeccH--HHHHHHHhhcceeeeeeeEEEecChHHHHh-ccCHH
Confidence 655 25567889988888899999 7888854 799999999999988888888898888754 44566
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhHHHH
Q 001536 177 DKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVY 256 (1058)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1058)
++-.+|-...+..++...+..+...+..+.......-.....+..+....+......+.+..+..+....+.....+.+.
T Consensus 144 Elt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLf 223 (1141)
T KOG0018|consen 144 ELTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELF 223 (1141)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777788888888888888877777777777777777777777777788888888888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHH------HHHHHHHHHH
Q 001536 257 DVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLR-------DCFMKKKAEIAVMVEKTSE------VRRRKDELQQ 323 (1058)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~ 323 (1058)
..+..+.....++..+...+..+....+.....+.... .++......+......+.+ ..........
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~ 303 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKK 303 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchh
Confidence 88887777777777777776666655554444433333 3333333333333332222 1112222233
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------------------------HHH
Q 001536 324 SISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQ----------------------------AEE 375 (1058)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~ 375 (1058)
.+......+...+.........+..++.++..+.........++....+ .++
T Consensus 304 rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el 383 (1141)
T KOG0018|consen 304 RLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEEL 383 (1141)
T ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHH
Confidence 4444444444444444444444444444444333333322222211110 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 001536 376 SEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKN---------------------EIRRISDEIEDYDKKCREI 434 (1058)
Q Consensus 376 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~l 434 (1058)
.-++.....-+..++.......+++..+..+...+..... .+..++..+.....+...+
T Consensus 384 ~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~ 463 (1141)
T KOG0018|consen 384 EVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYEL 463 (1141)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHH
Confidence 1111111111111111111111222222222222211111 1122222222222222222
Q ss_pred HHHHHHHHHhcCCcccccC-cccHHHHHHHHHhhccCCCCCCcccccccEEecCCCChHHHHHHHHhccccceeecchhh
Q 001536 435 RSEIRELQQHQTNKVTAFG-GDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKD 513 (1058)
Q Consensus 435 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~ 513 (1058)
..++..........-.... +.........+...++.| ++++|.+.+++.... ..|..|+..++|....+++|++..+
T Consensus 464 n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~f-Pgv~GrviDLc~pt~-kkyeiAvt~~Lgk~~daIiVdte~t 541 (1141)
T KOG0018|consen 464 NEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLF-PGVYGRVIDLCQPTQ-KKYEIAVTVVLGKNMDAIIVDTEAT 541 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhC-CCccchhhhcccccH-HHHHHHHHHHHhcccceEEeccHHH
Confidence 2222222222111111111 011122223333334433 567788888887765 7899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEecCCCCCCCCCCCCCCCCCCchhhccccCcHHHHHHhhccCCccEEEEecChHHHHHHh
Q 001536 514 ALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVA 593 (1058)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 593 (1058)
+..|..+++..++.+.+|+|++.....+...... ...++..+++++...+.....++ ...+..++|+....+..++
T Consensus 542 a~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr-~~~g~rlv~Dvi~ye~e~eka~~---~a~gn~Lvcds~e~Ar~l~ 617 (1141)
T KOG0018|consen 542 ARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLR-ELGGVRLVIDVINYEPEYEKAVQ---FACGNALVCDSVEDARDLA 617 (1141)
T ss_pred HHHHHHHHHHhccCCccccchhhhhcCccccccc-CcCCeEEEEEecCCCHHHHHHHH---HHhccceecCCHHHHHHhh
Confidence 9999999999999999999998765443322222 23457777888887764333222 2245689999999999999
Q ss_pred hhcCCCCcceEEccCCCeeeecCCccccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 001536 594 FEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQQCRK---RKRDSEERLQ 670 (1058)
Q Consensus 594 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~l~~~~~~~~~l~~---~~~~l~~~~~ 670 (1058)
+.+..+. .+++++|.++..+|.++++..... |. +..+..|......+..++.++.. +....+.++.
T Consensus 618 y~~~~r~--k~valdGtl~~ksGlmsGG~s~~~-wd--------ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~ 686 (1141)
T KOG0018|consen 618 YGGEIRF--KVVALDGTLIHKSGLMSGGSSGAK-WD--------EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIH 686 (1141)
T ss_pred hcccccc--eEEEeeeeEEeccceecCCccCCC-cC--------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8877643 789999999988887666555433 32 22233333322222222222221 2333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001536 671 DLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSM------ 744 (1058)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~------ 744 (1058)
.++..+.-...++..+...+...+.+++.....+.. ....+..+...+......+..++..+..+...+
T Consensus 687 ~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~-----~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~ 761 (1141)
T KOG0018|consen 687 GLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDE-----FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCR 761 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444444444444444444444444433333 333333333333333333333333222222211
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-
Q 001536 745 ------------------------------------------------NEAEAKVEDLKLSFQSLCESAKEEVDTFEAA- 775 (1058)
Q Consensus 745 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 775 (1058)
......+..++.+++.+..........+...
T Consensus 762 ~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~ 841 (1141)
T KOG0018|consen 762 RIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIE 841 (1141)
T ss_pred hcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHH
Confidence 1111111111111111111111111111000
Q ss_pred ------HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCch-----hhh-----
Q 001536 776 ------EKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPES-----EIE----- 839 (1058)
Q Consensus 776 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~----- 839 (1058)
.........++.+.......+...+ ..+...+..++..++.+..+...+...+...+..- .+.
T Consensus 842 ~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~-tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ 920 (1141)
T KOG0018|consen 842 ELEKKNKSKFEKKEDEINEVKKILRRLVKEL-TKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIG 920 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCcccccee
Confidence 0011111222222222222222222 33444444444445555544444444433221110 111
Q ss_pred ---hcCCCCCCCHHHHHHHHHHHHHHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 840 ---ALGGWDGSTPEQLSAQVNRLNQRLKHESHQ--YSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWG 914 (1058)
Q Consensus 840 ---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~ 914 (1058)
++++. +..+. ++.+|++....+..+.+. +.+.++.+. +..+...+......-....+... ....++++
T Consensus 921 ieidy~~L-~~~y~-L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~---~VK~~R~~ 993 (1141)
T KOG0018|consen 921 IEIDYSGL-PREYK-LQQKLEEKQSVLNRIAPNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFN---KVKKKRYE 993 (1141)
T ss_pred cccccccc-cHHHH-HHHHHHHHHHHHHHhCcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 11122 22233 666666666666554222 223333333 33333333333333333333332 33456778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCceeeEeeccccceeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhhhhc
Q 001536 915 KFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMT 994 (1058)
Q Consensus 915 ~~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~~ 994 (1058)
.|...|+.+..++..+|..+.+ ..+..++.++.++.|+--+++++..||++.+++++.||||||+++|||||||++.+.
T Consensus 994 ~F~~~F~~va~~Id~IYK~Ltn-t~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLALLFaihsy~ 1072 (1141)
T KOG0018|consen 994 RFMACFEHVADNIDRIYKELTN-TEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALALLFAIHSYK 1072 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cccceeecCCCCCcchhcCccccccCCccccCchhhcCccHHHHHHHHHHHHhccCC
Confidence 9999999999999999999884 346678888888888888889999999999999999999999999999999999999
Q ss_pred CCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEec
Q 001536 995 EAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQM 1053 (1058)
Q Consensus 995 ~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~ 1053 (1058)
|+||+||||||++||..|.. .+..|+++.++|+||||.++.-...+...|+|++=
T Consensus 1073 PaPFfvlDEiDAALDntNi~----kvasyIr~~~~Q~IvISLK~~~y~kadaLVGvyr~ 1127 (1141)
T KOG0018|consen 1073 PAPFFVLDEIDAALDNTNIG----KVASYIRSSNFQFIVISLKEEFYQKADALVGVYRD 1127 (1141)
T ss_pred CCCceehhhHHHHhhhccHH----HHHHHHhcCCceEEEEeccHHHhhhhhceeeeccC
Confidence 99999999999999999954 45555556899999999999644445556999874
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=2.1e-65 Score=645.74 Aligned_cols=992 Identities=18% Similarity=0.246 Sum_probs=512.7
Q ss_pred eEEEEEEEeccccc-CceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhc-----CCceeEEEE
Q 001536 21 TITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVEV 94 (1058)
Q Consensus 21 ~i~~l~l~nf~~~~-~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~-----~~~~~~v~~ 94 (1058)
+|++|.|.||++|. .++|+|+||+|+|+||||||||||||||.||||+.+....|+.++.++|+. +...+.|.+
T Consensus 1 ~i~~l~l~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~ 80 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTV 80 (1164)
T ss_pred CeeEEEEeCeeeECCeeEEeecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEE
Confidence 58999999999997 589999999999999999999999999999999988766788888899987 345789999
Q ss_pred EEEeCCCCccCcccCCCeEEEEEEEe---cCc-ceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhh
Q 001536 95 ELKNRGEDAFKPEIFGDSIIIERRIT---EST-STTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (1058)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~---~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 170 (1058)
+|.++++. +...+.|.|++. ++. +.|++ ||.+++ ..++..++..+|++.+++. ++.|+.+..|+
T Consensus 81 ~f~~~~~~------~~~~~~i~r~~~~~~~~~~~~~~~---n~~~~~--~~~~~~~l~~~~~~~~~~~-~~~qg~~~~~~ 148 (1164)
T TIGR02169 81 TFKNDDGK------FPDELEVVRRLKVTDDGKYSYYYL---NGQRVR--LSEIHDFLAAAGIYPEGYN-VVLQGDVTDFI 148 (1164)
T ss_pred EEEcCCCC------CCCcEEEEEEEEEcCCCCcceEEE---CCcccc--HHHHHHHHHHcCCCcCcce-EEecchHHHHH
Confidence 99876432 113578888755 333 57888 677664 5799999999998887654 57799999998
Q ss_pred hcCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 001536 171 HSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKL 250 (1058)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1058)
... +..+..++....++..+...+..+...+......+.++...+..+..+++.++.......++..+...+.......
T Consensus 149 ~~~-~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~ 227 (1164)
T TIGR02169 149 SMS-PVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE 227 (1164)
T ss_pred CCC-HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 4567777777788888888888888899999999999988888888888888888887766666665554444443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH----------------------HHHHHHHH
Q 001536 251 AWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKK----------------------KAEIAVMV 308 (1058)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~ 308 (1058)
....+..+...+..+..++..+...+..+...+..+...+..+...+..+ ...+..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 307 (1164)
T TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE 307 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333322222222222222222211111 11111111
Q ss_pred HhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHH------
Q 001536 309 EKTSEVRRR-------KDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQ-------VHDIQEQHV------ 368 (1058)
Q Consensus 309 ~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~------ 368 (1058)
..+..+... +..+...+..+..++..+...+.....++..+...+..+... +..+.....
T Consensus 308 ~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 387 (1164)
T TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 111111222222222222222222111111111111111111 111111000
Q ss_pred HhhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHhHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 001536 369 RNTQAEESEIEAKLKELQCE--------------IDAANITLSRMKEEDSALSEKLSKE-------KNEIRRISDEIEDY 427 (1058)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~l~~~~~~~ 427 (1058)
......+..+..++..+... +..+...+..+...+..+...+..+ ...+..+...+..+
T Consensus 388 ~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 467 (1164)
T TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111111111111 1111111111111111111111111 11111111111111
Q ss_pred HH-------HHHHHHHHHHHHHHhcCCc---ccccCcc-cHHHHHHHHHhhccCCCCCCcccccccEEecCCCChHHHHH
Q 001536 428 DK-------KCREIRSEIRELQQHQTNK---VTAFGGD-RVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVE 496 (1058)
Q Consensus 428 ~~-------~~~~l~~~~~~l~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 496 (1058)
+. ++..+...+..+....... ...+.+. .....+..+. ... ..+++|++++++.+ + +.|..|++
T Consensus 468 ~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~--~~~-~~g~~g~l~dli~v-~-~~y~~Aie 542 (1164)
T TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVL--KAS-IQGVHGTVAQLGSV-G-ERYATAIE 542 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH--hcC-CCCceecHHHhcCc-C-HHHHHHHH
Confidence 11 1111111111111111000 0000000 0001111111 111 24567888898888 4 79999999
Q ss_pred HHHhccccceeecchhhHHHHHHHHHHhcCCCccEEEEecCCCCCCCCCCCCCCCCCCchhhccccCcHHHHHHhhccCC
Q 001536 497 QAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGS 576 (1058)
Q Consensus 497 ~~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~ 576 (1058)
.++|+.+.++||++..++..+..+++..+.++.+|+|++...+.........+.+....+++.+..++ .+..++. ..
T Consensus 543 ~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~--~~ 619 (1164)
T TIGR02169 543 VAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDP-KYEPAFK--YV 619 (1164)
T ss_pred HHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCcccccCCCchHHHHHHccCcH-HHHHHHH--HH
Confidence 99999999999999999999999999888999999988754321100010011122223445555432 1221111 11
Q ss_pred ccEEEEecChHHHHHHhhhcCCCCcceEEccCCCeeeecCCcccccccccc---ccC--ccccCCHHHHHHHHHHHHHHH
Q 001536 577 AERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRR---LRT--GRLCGSYDEKIKDLERAALHV 651 (1058)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~--~~~~~~l~~~i~~l~~~l~~~ 651 (1058)
++.+++|+++..+..++. ...++|++|.++.+.|.+++|...... ... ...+..+..++..+..++..+
T Consensus 620 lg~~~v~~~l~~a~~~~~------~~~~vTldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l 693 (1164)
T TIGR02169 620 FGDTLVVEDIEAARRLMG------KYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSL 693 (1164)
T ss_pred CCCeEEEcCHHHHHHHhc------CCcEEEeCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999998888763 126899999998877766544311100 000 000112233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHhhhhhcCC--CCCCCc
Q 001536 652 QEEAQQCRKRKRDSEERLQDLQQHQQNVKRR-------C-------FSAERNRMSKELAFQDVKNSFAADAG--PPSASA 715 (1058)
Q Consensus 652 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~-------~-------~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~ 715 (1058)
...+..+...+..+...+..+...+..+... + ..+...+..+...+..+..++..... ..+...
T Consensus 694 ~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~ 773 (1164)
T TIGR02169 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332222222222222111111 1 11111111111111111111111000 001111
Q ss_pred hhHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----
Q 001536 716 VDEISQE-------------------ISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDT----- 771 (1058)
Q Consensus 716 ~~~l~~~-------------------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 771 (1058)
+..+..+ +..+..++..+...+..+...+..+...+..+...+..+...+..+...
T Consensus 774 i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~ 853 (1164)
T TIGR02169 774 LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1111112222222222222222221111111111111111111111111
Q ss_pred --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 001536 772 --FEAAEKELMEIEKNLQTSESEKAHYEDVMR------TRVVGAIKEAESQYRELE--------------LLRQDSCRKA 829 (1058)
Q Consensus 772 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~ 829 (1058)
+..+...+..+...+..+...+..+...+. ..+...+..+...+..+. ..+..+....
T Consensus 854 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 933 (1164)
T TIGR02169 854 KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111122222222222222222220 111111111111111111 1111111111
Q ss_pred HhhCCch-hhhhcCCCCCCCHHHHHHHHHHHHHHHHHH---hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 830 SVICPES-EIEALGGWDGSTPEQLSAQVNRLNQRLKHE---SHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRAC 905 (1058)
Q Consensus 830 ~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l 905 (1058)
....... ....... .......+..++..+..++..+ |..+...|+++..+|..+..++.++......+...|..|
T Consensus 934 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l 1012 (1164)
T TIGR02169 934 SEIEDPKGEDEEIPE-EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012 (1164)
T ss_pred HHhhhhhhhhhhccc-ccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000 0000000 0234677888888888877764 445567889999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCceeeEeecc----ccceeEEEEecCCCCCCCcccCCccCCCCchhH
Q 001536 906 REALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININY----EEKTLSIEVKMPQDASSSNVRDTRGLSGGERSF 981 (1058)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~----~~~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~ 981 (1058)
+. .+...|...|..+...|..+|..+| |+.|.+.++. ...|+.+.|.| +++...++..|||||+++
T Consensus 1013 ~~---~~~~~f~~~f~~~~~~f~~~~~~l~---~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lSgge~~~ 1082 (1164)
T TIGR02169 1013 EK---KKREVFMEAFEAINENFNEIFAELS---GGTGELILENPDDPFAGGLELSAKP----KGKPVQRLEAMSGGEKSL 1082 (1164)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHh---CCeEEEEecCCCCcccCCeEEEEEc----CCCCCCcchhcCcchHHH
Confidence 73 4456788889999999999999888 7788887754 34578888887 445556788999999999
Q ss_pred HHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEe
Q 001536 982 STLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1052 (1058)
Q Consensus 982 ~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1052 (1058)
++||++||++.+.|+||+||||||++||+.|+..++.+|.+++ .++|||||||++..+..++..++|+.
T Consensus 1083 ~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~--~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1083 TALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA--GEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred HHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHhcceeEeEEE
Confidence 9999999999999999999999999999999999999888876 67999999999965544444466654
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=6.2e-58 Score=581.43 Aligned_cols=1000 Identities=17% Similarity=0.253 Sum_probs=503.5
Q ss_pred eEEEEEEEecccccC-ceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCc------eeEEE
Q 001536 21 TITRVRLENFMCHSS-LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVE 93 (1058)
Q Consensus 21 ~i~~l~l~nf~~~~~-~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~------~~~v~ 93 (1058)
+|.+|.|.||++|.+ .+|+|+||+|+|+|||||||||||+||.||||+.++...|+.++.++|+.|+. .+.|+
T Consensus 1 ~i~~l~~~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~ 80 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTINFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVE 80 (1179)
T ss_pred CeeEEEEeCccccCCCeeEEecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEE
Confidence 489999999999954 79999999999999999999999999999999988777899999999998873 58999
Q ss_pred EEEEeCCCCccCcccCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhhhc
Q 001536 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (1058)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 172 (1058)
++|.+.+. +.|.+....++|.|++. ++.+.|++ +|..+ +..++..++..+|++.+++ .|++|+.+..|+.+
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~i~r~~~~~~~~~~~~---~~~~~--~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~ 152 (1179)
T TIGR02168 81 LVFDNSDG--LLPGADYSEISITRRLYRDGESEYFI---NGQPC--RLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEA 152 (1179)
T ss_pred EEEecCCC--CCCCCCCCeEEEEEEEeeCCCceeeE---CCCcc--cHHHHHHHHhccCCCcccc-hheecccHHHHHcC
Confidence 99987532 22211235699999998 67788989 56655 4468899999999988764 78999999999976
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhh
Q 001536 173 GNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAW 252 (1058)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1058)
.+..++.++..+.++..+...+..+..++.++.+.+.++..++..+..+.+.++.......++..+...+.........
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (1179)
T TIGR02168 153 -KPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLV 231 (1179)
T ss_pred -CHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468889999999999999999999999999999999999999999988888887777766666666555444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHH
Q 001536 253 SWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVM--------------VEKTSEVRRRK 318 (1058)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 318 (1058)
..+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+ ...+..+...+
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~ 311 (1179)
T TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444444444443333333333333333333333322222222222222 22222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHH
Q 001536 319 DELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHV-------------RNTQAEESEIEAKLKEL 385 (1058)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l 385 (1058)
..+...+..+..++..+...+..+...+..+...+..+...+..+...+. ......+..+..++..+
T Consensus 312 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (1179)
T TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222222222222222222222222211111110 00011112222222222
Q ss_pred HHHHHHHHHHHHHhHH-------hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-------hcC
Q 001536 386 QCEIDAANITLSRMKE-------EDSALSEKLSKEKNEI-----RRISDEIEDYDKKCREIRSEIRELQQ-------HQT 446 (1058)
Q Consensus 386 ~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~l~~~~~~l~~-------~~~ 446 (1058)
..++..+...+..+.. .+..+...+..+...+ ..+...+..+..++..+...+..+.. ...
T Consensus 392 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 471 (1179)
T TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333333 3333333333332222 12222222222222222221111111 000
Q ss_pred Cc---ccc-------cC--cc----------cHHHHHHHHHhhccCCCCCCcccccccEEecCCCChHHHHHHHHhcccc
Q 001536 447 NK---VTA-------FG--GD----------RVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLN 504 (1058)
Q Consensus 447 ~~---~~~-------~~--~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (1058)
.. +.. +. .. .+...+..+......+ .+++|.+..++.+ + +.|..++...+|+.+.
T Consensus 472 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~v~~~i~v~~~~-~~~~g~~~~li~~-~-~~~~~a~~~~~g~~~~ 548 (1179)
T TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL-SGILGVLSELISV-D-EGYEAAIEAALGGRLQ 548 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhccccc-CCCccchhceeee-C-hhHHHHHHHHHHHHhc
Confidence 00 000 00 00 0000011111111111 2356666677766 4 7899999999988777
Q ss_pred ceeecchhhHHHHHHHHHHhcCCCccEEEEecCCCCCCC-CC-CCCCC--CCCCchhhccccCcHHHHHHhhccCCccEE
Q 001536 505 AFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSL-PH-HMLPH--TKHPTTLSVLQSDNPTVINVLVDMGSAERQ 580 (1058)
Q Consensus 505 ~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~--~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~ 580 (1058)
.++|++...+..+...+.....+..++++++........ +. ..++. +....+.+..... +.....+.. ..+..
T Consensus 549 ~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~~~~~~--~~~~~ 625 (1179)
T TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFD-PKLRKALSY--LLGGV 625 (1179)
T ss_pred CeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhccc-HhHHHHHHH--HhCCc
Confidence 788888887766666666555566666665543211000 00 00000 1111111111111 111111100 01122
Q ss_pred EEecChHHHHHHhhhcCCCCcceEEccCCCeeeecCCccccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 581 VLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQQCRK 660 (1058)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~l~~~~~~~~~l~~ 660 (1058)
.++..+..+........ ....+++++|..+..+|...++.. . . ......+..++..++..+..+...+..+..
T Consensus 626 ~ivt~l~~a~~~~~~~~--~~g~~v~~~G~~~~~gg~~~~~~~-~---~-~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~ 698 (1179)
T TIGR02168 626 LVVDDLDNALELAKKLR--PGYRIVTLDGDLVRPGGVITGGSA-K---T-NSSILERRREIEELEEKIEELEEKIAELEK 698 (1179)
T ss_pred eEeCCHHHHHHHHHHcC--CCceEEecCCEEEcCCceEecCcc-c---c-ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555543221 123667777754433332211111 0 1 111224445555555555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhcCC--CCCCCchhHHHHHHHHHHHHHH
Q 001536 661 RKRDSEERLQDLQQHQQNVKRRCF-------SAERNRMSKELAFQDVKNSFAADAG--PPSASAVDEISQEISNIQEEIQ 731 (1058)
Q Consensus 661 ~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~ 731 (1058)
.+..+...+..+...+..+...+. .+...+..+...+..+..++..... ..+...+..+..++..+...+.
T Consensus 699 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 778 (1179)
T TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333322222 2222222222222222222111000 0011111222222222222111
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHH-------
Q 001536 732 EKEIIL-------EKLQFSMNEAEAKVEDLKLSFQSLCESA-------KEEVDTFEAAEKELMEIEKNLQTSE------- 790 (1058)
Q Consensus 732 ~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------- 790 (1058)
.+...+ ..+...+..+...+..+...+..+...+ ..+...+..+..++..+...+..+.
T Consensus 779 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 858 (1179)
T TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1122222222222222222222222222 2222222222222222222222222
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHH--------------H-------hhC---------
Q 001536 791 SEKAHYEDVMRTRVVGAIKEAESQYR-------ELELLRQDSCRKA--------------S-------VIC--------- 833 (1058)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~--------------~-------~~~--------- 833 (1058)
..+..+...+ ..+...+..+...+. .+...+..+.... . ...
T Consensus 859 ~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~ 937 (1179)
T TIGR02168 859 AEIEELEELI-EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937 (1179)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 111111111111111 1111110000000 0 000
Q ss_pred --C-chhhh--------hcCCC---CCCCHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 834 --P-ESEIE--------ALGGW---DGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFR 899 (1058)
Q Consensus 834 --~-~~~~~--------~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 899 (1058)
. ..... ..... ....+..+..++..++..+.. +......+..+|+.+..++.++...+..+.
T Consensus 938 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lg~aiee----~~~~~~~a~er~~~l~~q~~dL~~~~~~L~ 1013 (1179)
T TIGR02168 938 IDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE----LGPVNLAAIEEYEELKERYDFLTAQKEDLT 1013 (1179)
T ss_pred HHHHHHHHHHHhccCHHHHHhhccccccCHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 00000 023445566666666664443 222222344899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CceeeEeeccc----cceeEEEEecCCCCCCCcccCCcc
Q 001536 900 EKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKK--GISGKININYE----EKTLSIEVKMPQDASSSNVRDTRG 973 (1058)
Q Consensus 900 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~g~~~~~~~----~~~l~i~v~~~~~~~~~~~~~~~~ 973 (1058)
..|..++..+...+..-...|..++..|...|..+|+.+ |+.+++.++.. ..|+.+.+.| ++.....+..
T Consensus 1014 ~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 1089 (1179)
T TIGR02168 1014 EAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEAGIEIFAQP----PGKKNQNLSL 1089 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccccCceEEEeC----CCCccccccc
Confidence 999999988888874445556666666666666666554 55566665422 3455666665 4444557889
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEec
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQM 1053 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~ 1053 (1058)
||||++.+++|+++||++.+.|+||+||||||++||+.++..++..|..++ .+.|||||||++..+..++..++|..-
T Consensus 1090 lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~--~~~~~i~~sh~~~~~~~~d~~~~~~~~ 1167 (1179)
T TIGR02168 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS--KNTQFIVITHNKGTMEVADQLYGVTMQ 1167 (1179)
T ss_pred cCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc--cCCEEEEEEcChhHHHHhhhHeeeeec
Confidence 999999999999999999999999999999999999999999888888876 568999999998644334444666554
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=8.2e-47 Score=454.20 Aligned_cols=156 Identities=27% Similarity=0.400 Sum_probs=117.7
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|.|.||++|.+.+|+|+||+|+|+||||||||||++||.|||||.++. ...+.++++.|...+.|+++|.++
T Consensus 1 M~i~~l~l~nf~~~~~~~~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~---~~~~~~~~~~~~~~~~v~~~f~~~ 77 (880)
T PRK02224 1 MRFDRVRLENFKCYADADLRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKAL---DDTLDDVITIGAEEAEIELWFEHA 77 (880)
T ss_pred CeEEEEEEECcccccceEEecCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc---cccHHHHHhCCCCcEEEEEEEEEC
Confidence 89999999999999999999999999999999999999999999999988763 235678899999999999999976
Q ss_pred CCCccCcccCCCeEEEEEEEe-cCc----ceEEEEcCCCceecccHHHHHHH-HHhcCCc--ccCCeeeechhhhhHhhh
Q 001536 100 GEDAFKPEIFGDSIIIERRIT-EST----STTVLKDHQGKRVASRKQELLEL-IDHFNID--VENPCVIMSQDKSREFLH 171 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~----~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~q~~~~~~l~ 171 (1058)
|..|.|.|++. .+. ..+++.++++ ...+..++... ...+|++ .+..+++++|+.+..|+.
T Consensus 78 ----------~~~~~i~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~ 145 (880)
T PRK02224 78 ----------GGEYHIERRVRLSGDRATTAKCVLETPEG--TIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLIN 145 (880)
T ss_pred ----------CEEEEEEEEEecCCCCcccceeEEeCCCc--cccChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHc
Confidence 35689999986 332 2344443222 22233444443 3334544 555678999999999997
Q ss_pred cCCchhHHHHHHhhhhHHHH
Q 001536 172 SGNDKDKFKFFFKATLLQQV 191 (1058)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~ 191 (1058)
. .+.++...+.....+..+
T Consensus 146 ~-~p~~R~~ii~~l~~l~~~ 164 (880)
T PRK02224 146 A-TPSDRQDMIDDLLQLGKL 164 (880)
T ss_pred C-CHHHHHHHHHHHhCCHHH
Confidence 6 445677777766654433
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=427.26 Aligned_cols=181 Identities=21% Similarity=0.296 Sum_probs=131.6
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|.|.||++|.+.+|+|+||+|+|+||||||||||++||.|||||.++...++....++++.|...+.|.++|..+
T Consensus 1 m~i~~l~i~nf~~~~~~~i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~ 80 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSVVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGSGTEIELKFEKN 80 (880)
T ss_pred CeeEEEEEeCccCccCceEecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCCCEEEEEEEEEC
Confidence 89999999999999989999999999999999999999999999999986554445555678999999999999999876
Q ss_pred CCCccCcccCCCeEEEEEEEecCcceEEEEcCCCc-eecccHHHHHHHHH-hcCCcccCCeeeechhhhhHhhhcCCchh
Q 001536 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGK-RVASRKQELLELID-HFNIDVENPCVIMSQDKSREFLHSGNDKD 177 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 177 (1058)
|..|+|.|.+..+.+.+.+. +|. .+..+..++...+. .++.+.+..++|++|+.+.+|+. .+..
T Consensus 81 ----------~~~~~i~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~--~~~~ 146 (880)
T PRK03918 81 ----------GRKYRIVRSFNRGESYLKYL--DGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE--SDES 146 (880)
T ss_pred ----------CeEEEEEEEEcCCceEEEEC--CCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc--CcHH
Confidence 45799999987544443332 342 33334455555433 34555666678999999999986 3456
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 178 KFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEA 214 (1058)
Q Consensus 178 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 214 (1058)
+...+....+++.+......+..........+..+..
T Consensus 147 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (880)
T PRK03918 147 REKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEK 183 (880)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666665555555544444444444444333
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=407.73 Aligned_cols=175 Identities=23% Similarity=0.358 Sum_probs=131.1
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|+|.||++|++.+|+|+||+|+|+||||||||||++||.|||||.++ +....++++.|...+.|+++|..+
T Consensus 1 M~i~~l~l~NF~s~~~~~i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~----~~~~~~~i~~~~~~~~V~l~f~~~ 76 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSEIEFDTGINIITGKNGAGKSSIVDAIRFALFTDKR----TEKIEDMIKKGKNNLEVELEFRIG 76 (895)
T ss_pred CeEEEEEEeCccCCCCceEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc----cccHHHHhhCCCCeEEEEEEEEEC
Confidence 8999999999999999999999999999999999999999999999998753 234578899999999999999876
Q ss_pred CCCccCcccCCCeEEEEEEEe-cCcc---eEEEEcCCCceecccHHHHHHHHH--hcCCc--ccCCeeeechhhhhHhhh
Q 001536 100 GEDAFKPEIFGDSIIIERRIT-ESTS---TTVLKDHQGKRVASRKQELLELID--HFNID--VENPCVIMSQDKSREFLH 171 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~---~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~q~~~~~~l~ 171 (1058)
|..|+|.|.+. .+++ ...+. .+|.+++.+..++..++. .+|++ .+...+|++|+.+..|+.
T Consensus 77 ----------g~~y~i~R~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~ 145 (895)
T PRK01156 77 ----------GHVYQIRRSIERRGKGSRREAYIK-KDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLIS 145 (895)
T ss_pred ----------CEEEEEEEEEecCCCCCCceEEEe-cCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHh
Confidence 45799999986 2221 22222 267777655567777664 34543 445678999999999886
Q ss_pred cCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVL 210 (1058)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 210 (1058)
..+ ..+...+....++..+...+..+...+..+...+.
T Consensus 146 ~~~-~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~ 183 (895)
T PRK01156 146 GDP-AQRKKILDEILEINSLERNYDKLKDVIDMLRAEIS 183 (895)
T ss_pred CCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 56777777777766666555555554444444433
No 13
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-40 Score=394.05 Aligned_cols=186 Identities=27% Similarity=0.394 Sum_probs=134.8
Q ss_pred eeEEEEEEEecccccCceee--eCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEE
Q 001536 20 GTITRVRLENFMCHSSLQIE--LGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~--f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~ 97 (1058)
|+|.+|.|.||++|.+.+|. |++|+|+|+||||||||||||||+|||||..+..+ ..+..++++.|+..+.|+++|.
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~~~~V~l~F~ 79 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEKSASVELEFE 79 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCccEEEEEEEE
Confidence 89999999999999998888 99999999999999999999999999999998644 5677899999999999999999
Q ss_pred eCCCCccCcccCCCeEEEEEEEecCcc----eEEEEcCCCceecccHHHHHHHH-HhcCCc--ccCCeeeechhhhhHhh
Q 001536 98 NRGEDAFKPEIFGDSIIIERRITESTS----TTVLKDHQGKRVASRKQELLELI-DHFNID--VENPCVIMSQDKSREFL 170 (1058)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~q~~~~~~l 170 (1058)
++ |..|.|.|.+..+++ ...+...+|..+.....++...+ ..+|++ .+..++|++||.+..|+
T Consensus 80 ~~----------g~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl 149 (908)
T COG0419 80 VN----------GKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFL 149 (908)
T ss_pred EC----------CEEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHH
Confidence 76 467999999873222 12233446666655555666644 444554 55568999999999999
Q ss_pred hcCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001536 171 HSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK 217 (1058)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 217 (1058)
...+. ++-..+.....++.+......+.......+..+..+...+.
T Consensus 150 ~~~~~-er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 150 KSKPK-ERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hcCcH-HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98664 44445555555444444444444444444444444444333
No 14
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=2.3e-33 Score=334.57 Aligned_cols=187 Identities=19% Similarity=0.280 Sum_probs=131.0
Q ss_pred eeEEEEEEEecccc-cCceeeeC------CCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCc-cchhhhhhcCCceeE
Q 001536 20 GTITRVRLENFMCH-SSLQIELG------EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRA-ATLKDFIKTGCSYAM 91 (1058)
Q Consensus 20 m~i~~l~l~nf~~~-~~~~i~f~------~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~-~~~~~~i~~~~~~~~ 91 (1058)
|+|.+|++.||++| +..+|+|. .|+++|+||||||||||+|||+|||||.+++..+. ..+.+++..|...++
T Consensus 1 Mk~~~l~~~nf~s~~~~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~ 80 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECL 80 (1047)
T ss_pred CcceEEEeecceeEcCCceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceE
Confidence 89999999999999 56789885 58999999999999999999999999998864443 356888999999999
Q ss_pred EEEEEEeCCCCccCcccCCCeEEEEEEEe----cCcc-----eEEEE-cCCCceecccHHHHHH-HHHhcCCc--ccCCe
Q 001536 92 VEVELKNRGEDAFKPEIFGDSIIIERRIT----ESTS-----TTVLK-DHQGKRVASRKQELLE-LIDHFNID--VENPC 158 (1058)
Q Consensus 92 v~~~~~~~~~~~~~~~~~~~~~~i~R~~~----~~~~-----~~~~~-~~~g~~~~~~~~~~~~-~~~~~~~~--~~~~~ 158 (1058)
|+|+|..+| ..|.|.|... .+++ .+.+. ..+|..+..+..++.. +...+|++ .|..+
T Consensus 81 v~~~F~~~~----------~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~ 150 (1047)
T PRK10246 81 AEVEFEVKG----------EAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRS 150 (1047)
T ss_pred EEEEEEECC----------eEEEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhh
Confidence 999998763 3577766432 1111 12222 1345555444455554 33344544 55567
Q ss_pred eeechhhhhHhhhcCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001536 159 VIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK 217 (1058)
Q Consensus 159 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 217 (1058)
++++|+.+..|+...+ .++..++...+++..+......+.+........+..+..++.
T Consensus 151 v~l~QG~f~~fl~a~~-~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~ 208 (1047)
T PRK10246 151 MLLSQGQFAAFLNAKP-KERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQAS 208 (1047)
T ss_pred eeeccccHHHHHhCCh-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999998755 466677766666655555555555555555555555554443
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-34 Score=353.34 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=102.2
Q ss_pred eEEEEEEEeccccc-----CceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhh------cCCce
Q 001536 21 TITRVRLENFMCHS-----SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK------TGCSY 89 (1058)
Q Consensus 21 ~i~~l~l~nf~~~~-----~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~------~~~~~ 89 (1058)
+|.+|.|.||+||+ ..+|+|++|+++|+||||||||||++||.|||||..+...++. .+|+ .+...
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~~~~~~~~~ 78 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPKVAQETDVR 78 (1311)
T ss_pred ccceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCCcCccHhhh
Confidence 58899999999995 3589999999999999999999999999999988755432332 2332 22346
Q ss_pred eEEEEEEEeCCCCccCcccCCCeEEEEEEEe--cCcc--eE------EEEcCCCceec--ccHHHHH-HHHHhcCCc--c
Q 001536 90 AMVEVELKNRGEDAFKPEIFGDSIIIERRIT--ESTS--TT------VLKDHQGKRVA--SRKQELL-ELIDHFNID--V 154 (1058)
Q Consensus 90 ~~v~~~~~~~~~~~~~~~~~~~~~~i~R~~~--~~~~--~~------~~~~~~g~~~~--~~~~~~~-~~~~~~~~~--~ 154 (1058)
+.|.+.|.+. .|..|+|.|.+. .+++ .+ .....+|..++ ....++. .+...+|++ +
T Consensus 79 a~V~l~F~~~---------~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~ 149 (1311)
T TIGR00606 79 AQIRLQFRDV---------NGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAV 149 (1311)
T ss_pred heeEEEEEcC---------CCCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCHHH
Confidence 8999999654 256789999773 1111 00 11112565433 2335664 466667766 6
Q ss_pred cCCeeeechhhhhHhhhcCCchhHHHHHHhhhhH
Q 001536 155 ENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLL 188 (1058)
Q Consensus 155 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~l 188 (1058)
+..++|++|+.+.+++ . .+..+-..|....+.
T Consensus 150 f~~vi~~~Qge~~~~~-~-~~~~rk~~~d~if~~ 181 (1311)
T TIGR00606 150 LNNVIFCHQEDSNWPL-S-EGKALKQKFDEIFSA 181 (1311)
T ss_pred HhhceeeCCccccccc-C-ChHHHHHHHHHHhhh
Confidence 6678999999996443 3 344444444444433
No 16
>PRK04863 mukB cell division protein MukB; Provisional
Probab=100.00 E-value=1.2e-32 Score=327.60 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=68.4
Q ss_pred eeEeeccccceeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHH---hhhhcCCCeeeechhhh---ccChhhH--
Q 001536 942 GKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALA---LHEMTEAPFRAMDEFDV---FMDAISR-- 1013 (1058)
Q Consensus 942 g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~a---l~~~~~~p~~v~DE~~~---~lD~~~~-- 1013 (1058)
|...+|+..| +.+.|....+..+....+++.||||||+.++++|++| .|..+++||++.|++++ +||..++
T Consensus 1335 ~~~~lDyR~~-~~f~~~~~~g~~~~~~~~~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea~r~D 1413 (1486)
T PRK04863 1335 GEELLDYRNY-LELEVEVNRGADGWLRAESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEAARLD 1413 (1486)
T ss_pred cccccccccc-eEEEEEEecCCcceeecCCCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHhhcCC
Confidence 3334676665 3444443223334444457899999999999999998 77666766665555555 5555544
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCCCCCCCC
Q 001536 1014 KISLDTLVDFALAQGSQWIFITPHDVGLVKQ 1044 (1058)
Q Consensus 1014 ~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~ 1044 (1058)
.....+++++++.-+.|+||+||..+..+..
T Consensus 1414 ~~~~~~~~~l~~~~~~q~i~~tP~~~~~~~g 1444 (1486)
T PRK04863 1414 AKSIATLFELCERLDMQLLIAAPENISPEKG 1444 (1486)
T ss_pred HHHHHHHHHHHHHcCCcEEEechhhccCCCC
Confidence 4445666666666799999999999877554
No 17
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.5e-32 Score=327.38 Aligned_cols=188 Identities=20% Similarity=0.259 Sum_probs=133.4
Q ss_pred eeEEEEEEEecccccC-ceeeeCC--CeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCcc-chhhhhhcCCceeEEEEE
Q 001536 20 GTITRVRLENFMCHSS-LQIELGE--WVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA-TLKDFIKTGCSYAMVEVE 95 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~-~~i~f~~--~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~-~~~~~i~~~~~~~~v~~~ 95 (1058)
|+|.+|+|.||++|.+ .+|+|++ |+++|+||||||||||+|||+|||||.+++.++.. ...++...+...+.|+++
T Consensus 1 M~~~~L~l~nf~s~~~~~~idF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 80 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELE 80 (1042)
T ss_pred CeeeEEEEeCeeccCCCceeeecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEE
Confidence 8999999999999965 5899988 99999999999999999999999999887543322 344555666778899999
Q ss_pred EEeCCCCccCcccCCCeEEEEEEEe----c--CcceEE---E-EcCCCceecccHHHHHHHH-HhcCCcccC--Ceeeec
Q 001536 96 LKNRGEDAFKPEIFGDSIIIERRIT----E--STSTTV---L-KDHQGKRVASRKQELLELI-DHFNIDVEN--PCVIMS 162 (1058)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~R~~~----~--~~~~~~---~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 162 (1058)
|..+| ..|.|.|.+. . |...+. + ...+|..+..+..++...+ ..+|++... .+++++
T Consensus 81 F~~~g----------~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l~ 150 (1042)
T TIGR00618 81 FSLGT----------KIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLP 150 (1042)
T ss_pred EEECC----------EEEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheeec
Confidence 98763 4466666553 1 111111 1 1234565655556777644 456766544 469999
Q ss_pred hhhhhHhhhcCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001536 163 QDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKP 218 (1058)
Q Consensus 163 q~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 218 (1058)
|+.+..|+... +.++..++...++++.+......+.+........+..+...+..
T Consensus 151 Qg~~~~fl~a~-~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (1042)
T TIGR00618 151 QGEFAQFLKAK-SKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQL 205 (1042)
T ss_pred ccchHHHHhCC-HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999885 46777777777777766666666666666666666665555543
No 18
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-32 Score=288.21 Aligned_cols=169 Identities=23% Similarity=0.254 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCceeeEeeccccc
Q 001536 872 ESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEK 951 (1058)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~~ 951 (1058)
.....+..++..+..++.+.......+.-...-+.+.+..... .....+....+.+|..+.. | .+-.+.+..+
T Consensus 811 ~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke---~rlP~vi~~A~~~F~hlT~--G--~Yt~Iy~~e~ 883 (984)
T COG4717 811 GTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKE---RRLPAVIQEASEFFMHLTD--G--RYTGIYTQED 883 (984)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHhhccC--C--ceeeeecccC
Confidence 3455566666666666666666666665555444444333222 1445566667778887655 1 1333444444
Q ss_pred eeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhhhh--cCCCeee-echhhhccChhhHHHHHHHHHHHHhcCC
Q 001536 952 TLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM--TEAPFRA-MDEFDVFMDAISRKISLDTLVDFALAQG 1028 (1058)
Q Consensus 952 ~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~--~~~p~~v-~DE~~~~lD~~~~~~~~~~l~~~~~~~~ 1028 (1058)
.-.|.|... .+....+..||.|.+..+.+|++||+... ...|||+ +|++|++||+.+...++..|.+++ .+
T Consensus 884 ~d~I~V~~~----~G~~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~LP~i~DD~fVhFD~~R~~r~~e~l~dls--~~ 957 (984)
T COG4717 884 KDSIIVEHR----AGGSKLAEELSQGTKEQLYLALRFALIHEVRTREPLPFIADDIFVHFDDERAKRMLELLADLS--EG 957 (984)
T ss_pred CceeEEEec----ccccccHHHHhhhHHHHHHHHHHHHHHhhhccCCCCCeeeccchhccCHHHHHHHHHHHHHhc--cC
Confidence 446777753 33444677899998888888888887764 3445555 899999999999999999999988 89
Q ss_pred cEEEEEccCCCCC--CCCCCCeeEEec
Q 001536 1029 SQWIFITPHDVGL--VKQGERIKKQQM 1053 (1058)
Q Consensus 1029 ~Q~i~iT~~~~~~--~~~~~~~~v~~~ 1053 (1058)
.|||+||||+.+. +..++.|.++++
T Consensus 958 ~QviYFTCHe~~~d~~~s~~vI~l~~~ 984 (984)
T COG4717 958 NQVIYFTCHEHTCDAFPSSEVITLHRL 984 (984)
T ss_pred CeEEEEEechhhhcccccccceeeccC
Confidence 9999999999773 444455776653
No 19
>PF13514 AAA_27: AAA domain
Probab=100.00 E-value=1.3e-27 Score=290.04 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCceeeEeeccccceeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhhhhc---C
Q 001536 919 NATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMT---E 995 (1058)
Q Consensus 919 ~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~~---~ 995 (1058)
....+...++.+|..+.. |-...+.++++.++..+.+.. .++...++..||+|.+-.+.||++||+.... .
T Consensus 977 ~~p~vl~~As~~f~~LT~--G~Y~~l~~d~d~~~~~l~~~~----~~G~~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~ 1050 (1111)
T PF13514_consen 977 RQPPVLARASEYFSRLTG--GRYSRLRVDEDGDKPVLVVVR----ADGERVPVEELSRGTRDQLYLALRLALAELLAEQG 1050 (1111)
T ss_pred hhHHHHHHHHHHHHHHhC--CCCceeeeccccCcccceEEe----cCCeEeeHHHhCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455666677778877655 322235555544333344443 3445568999999999999999999887643 5
Q ss_pred CCeee-echhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC----CCCCCeeEEec
Q 001536 996 APFRA-MDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV----KQGERIKKQQM 1053 (1058)
Q Consensus 996 ~p~~v-~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~----~~~~~~~v~~~ 1053 (1058)
.|+|| +||+|+++|..+...++..|.+++ .++||||||||+..+. .+.+.+.||.|
T Consensus 1051 ~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls--~~~QVI~FTch~~l~~~a~~~~~~~v~v~~L 1111 (1111)
T PF13514_consen 1051 EPLPFILDDIFVNFDDERARAALELLAELS--RRRQVIYFTCHEHLVELAREVFGDRVNVHEL 1111 (1111)
T ss_pred CCCcEEeeCCccccCHHHHHHHHHHHHHhc--cCCeEEEEeccHHHHHHHHHhcCCCCceeeC
Confidence 55555 899999999999999999999988 7899999999995322 15667888875
No 20
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=100.00 E-value=1.8e-24 Score=263.37 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=65.5
Q ss_pred CCccCCCCchhHHHHHHHHHhh--hh------cCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALH--EM------TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~--~~------~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
.+..||||||.+++...+||-. .| ...++++|||||+++|+.++..++++|.++ +.|||++|+..-..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~Wg~ 1319 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSEREWGC 1319 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccchhcc
Confidence 3688999999999765555522 22 345578899999999999998888877765 79999999998666
Q ss_pred CCCCCCeeEEecCCCC
Q 001536 1042 VKQGERIKKQQMAAPR 1057 (1058)
Q Consensus 1042 ~~~~~~~~v~~~~~~~ 1057 (1058)
..--+++-|+.|-+|+
T Consensus 1320 Y~tVp~laI~el~R~~ 1335 (1353)
T TIGR02680 1320 YPEVPGLAICQLLRPD 1335 (1353)
T ss_pred ccCCCcceEEEEecCC
Confidence 6666778888886664
No 21
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=8e-25 Score=224.79 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=69.4
Q ss_pred CeeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCcc--------CCCCccchhhhh-------
Q 001536 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAK--------GTQRAATLKDFI------- 83 (1058)
Q Consensus 19 ~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~--------~~~r~~~~~~~i------- 83 (1058)
-.++.+|.+.|||.|.-..|+..-+-.+++|..||||||++|||..+|-.... ...+..++..||
T Consensus 14 ~FRL~~iqliNWGTF~T~~~~~T~~G~LvTG~~GSGKSTLIDAITavLlP~~kl~~N~AA~A~t~~RSL~tYi~G~~raq 93 (1104)
T COG4913 14 QFRLSRIQLINWGTFHTVDIPVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSLVTYIRGAWRAQ 93 (1104)
T ss_pred ceeeeEEEEeeccccceeeeeEeccceEEecCCCCCchhHHHHHHHHhcccchhhcccccccCCchhHHHHHHHHHHhhc
Confidence 37899999999999987777776555899999999999999999987732111 111223555555
Q ss_pred -------------hcCCceeEEEEEEEeCCCCccCcccCCCeEEEEEEEe
Q 001536 84 -------------KTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT 120 (1058)
Q Consensus 84 -------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~R~~~ 120 (1058)
+..+.|+.|.++|.|+ +|.++++.-.|.
T Consensus 94 ~~~~~~~~~~~~LR~~a~YSlv~~~~~NG---------~~~~~TL~~iF~ 134 (1104)
T COG4913 94 EDPLQDQIVSTYLRPRATYSLVGLTYSNG---------EGVEHTLVAIFY 134 (1104)
T ss_pred cCccccceeeeeeccccceEEEEEEeecC---------CCeeEEEEEEEE
Confidence 3445678888999985 567788888777
No 22
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-24 Score=243.18 Aligned_cols=168 Identities=21% Similarity=0.297 Sum_probs=117.7
Q ss_pred CeeEEEEEEEecccccC---ceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCC------ce
Q 001536 19 AGTITRVRLENFMCHSS---LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SY 89 (1058)
Q Consensus 19 ~m~i~~l~l~nf~~~~~---~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~------~~ 89 (1058)
|..|.++.|.|.++|++ .+|.|..++|+|+||||+|||||+.++.|+..|..|.+.++ ..||+... ..
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpkIage~ev~ 77 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPKVAGETEVR 77 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCccccchhhhh
Confidence 34588899999999954 58899888999999999999999999999987766544454 33444322 35
Q ss_pred eEEEEEEEeCCCCccCcccCCCeEEEEEEEe-c-C----------cceEEEEcCCCceecccHHHHHH-HHHhcCCc--c
Q 001536 90 AMVEVELKNRGEDAFKPEIFGDSIIIERRIT-E-S----------TSTTVLKDHQGKRVASRKQELLE-LIDHFNID--V 154 (1058)
Q Consensus 90 ~~v~~~~~~~~~~~~~~~~~~~~~~i~R~~~-~-~----------~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~--~ 154 (1058)
|.|.+.|.+. .|..+++.|++. . + +.-+.+++..+..++....+++. +...+|++ +
T Consensus 78 AqvkL~f~~~---------~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAI 148 (1294)
T KOG0962|consen 78 AQVKLAFTDV---------NGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAI 148 (1294)
T ss_pred heeeeeeecC---------CCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHH
Confidence 7899999987 366789999876 2 1 22245553333344444456654 66777776 5
Q ss_pred cCCeeeechhhhhHhhhcCCc-hhHHHHHHhhhhHHHHHHHHHHH
Q 001536 155 ENPCVIMSQDKSREFLHSGND-KDKFKFFFKATLLQQVNDLLQSI 198 (1058)
Q Consensus 155 ~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~l~~~ 198 (1058)
.+.+.|++|+...|.+..+.. ..+|+-++.++.|....+.+..+
T Consensus 149 l~~VIFcHQEdS~WPLsEp~~LKkkfD~IF~~tky~KAld~~kk~ 193 (1294)
T KOG0962|consen 149 LENVIFCHQEDSTWPLSEPKNLKKKFDDIFSATKYTKALDSLKKL 193 (1294)
T ss_pred HhhhheecccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999887554 34466666676665555554444
No 23
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=100.00 E-value=3.6e-27 Score=269.05 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=95.1
Q ss_pred eeEEEEEEEecccccC-ceeeeC----CCeEEEEcCCCCcHHHHHHHHHHHhcCCccC-CCCcc-chh----hhhhcC--
Q 001536 20 GTITRVRLENFMCHSS-LQIELG----EWVNFITGQNGSGKSAILTALCIAFGCRAKG-TQRAA-TLK----DFIKTG-- 86 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~-~~i~f~----~~~~~I~G~NgsGKStil~ai~~~lg~~~~~-~~r~~-~~~----~~i~~~-- 86 (1058)
|+|.+|.|.||++|.+ ..|+|. +++++|+||||+||||+++||.|||||..+. ..|+. +.. ++++.+
T Consensus 1 M~i~~l~l~nf~~~~~~~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~~ 80 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQAG 80 (650)
T ss_pred CcccEEEEeceEEEcCCceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccCC
Confidence 8999999999999954 467765 3599999999999999999999999998753 23332 222 333332
Q ss_pred -CceeEEEEEEEeCCCCccCcccCCCeEEEEEEEe-c---CcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeee
Q 001536 87 -CSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-E---STSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIM 161 (1058)
Q Consensus 87 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~R~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1058)
...+.|+++|.+.+.+ ....|+|.|.|. + .+..+.+.. +|.....-...+.++++.+-......+||+
T Consensus 81 ~~~~~~V~l~f~~~~~~------~~~~y~i~R~w~~~~k~~~~~l~v~~-~~~~~~~~~~~~~~~i~~ilp~~~~~~FfF 153 (650)
T TIGR03185 81 KTNPASITLTFSVVEGG------KRHEYTLVRSWHINNKDVKEKLTVYK-DDEEDDSLNDIWDEFINELLPLELADLFFF 153 (650)
T ss_pred CCCCeEEEEEEEEccCC------ceEEEEEEEEecCCCCCCCCcEEEEE-CCcccchhhHHHHHHHHHhCCHhHHHHhcc
Confidence 3467999999865322 123589999986 2 223343322 342111111345566766644444567888
Q ss_pred chhhhhHhhh
Q 001536 162 SQDKSREFLH 171 (1058)
Q Consensus 162 ~q~~~~~~l~ 171 (1058)
+++++..+..
T Consensus 154 DGE~I~~la~ 163 (650)
T TIGR03185 154 DGEKIEALAN 163 (650)
T ss_pred cHHHHHHHhc
Confidence 8888877654
No 24
>PRK10869 recombination and repair protein; Provisional
Probab=99.97 E-value=1e-26 Score=255.74 Aligned_cols=196 Identities=13% Similarity=0.127 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 848 TPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQ---TYQAFREKVRACREALDSRWGKFQRNATLLK 924 (1058)
Q Consensus 848 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 924 (1058)
.+++++.++..+..-.+ ++...++++....+.+..++..+.. .+..+...+..+...+......+...+....
T Consensus 297 ~l~~ie~Rl~~l~~L~r----Kyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA 372 (553)
T PRK10869 297 RLAELEQRLSKQISLAR----KHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYA 372 (553)
T ss_pred HHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554222 2455566666666666666655543 5666677776666666666667777777778
Q ss_pred HHHHHHHHHhhhccCcee-e--Eeeccc-----c---ceeEEEEecCCCCCCCcccCC-ccCCCCchhHHHHHHHHHhhh
Q 001536 925 RQLTWQFNGHLGKKGISG-K--ININYE-----E---KTLSIEVKMPQDASSSNVRDT-RGLSGGERSFSTLCFALALHE 992 (1058)
Q Consensus 925 ~~~~~~f~~~~~~~~~~g-~--~~~~~~-----~---~~l~i~v~~~~~~~~~~~~~~-~~lSgGE~~~~~la~~~al~~ 992 (1058)
..|.......+..+++.+ . +.+... . +.+.+.+.++ +|.++.|+ ..+||||+++++||+.+++..
T Consensus 373 ~~l~~~v~~~L~~L~m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~n---~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~ 449 (553)
T PRK10869 373 KELAQLITESMHELSMPHGKFTIDVKFDPEHLSADGADRIEFRVTTN---PGQPLQPIAKVASGGELSRIALAIQVITAR 449 (553)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEEecCCCCCCCCCceEEEEEEecC---CCCCcchhhhhCCHHHHHHHHHHHHHHhcc
Confidence 888888888888888754 2 233211 1 2345556654 45555554 468999999999999999888
Q ss_pred hcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEe
Q 001536 993 MTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1052 (1058)
Q Consensus 993 ~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1052 (1058)
..++|++||||||+|+|+.....+...|.+++ .++|||||||.+.....++.++.|.+
T Consensus 450 ~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~--~~~qvi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 450 KMETPALIFDEVDVGISGPTAAVVGKLLRQLG--ESTQVMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEec
Confidence 88899999999999999999999999999887 67999999999853333444566665
No 25
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-23 Score=219.80 Aligned_cols=202 Identities=13% Similarity=0.158 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 846 GSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQ---TYQAFREKVRACREALDSRWGKFQRNATL 922 (1058)
Q Consensus 846 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 922 (1058)
+..+++++.++..+..-.++ +....+++....+++..++..+.. ....|+..+..+...+...-..+......
T Consensus 296 p~~L~~ve~Rl~~L~~l~RK----Y~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 296 PNRLEEVEERLFALKSLARK----YGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777764444 566677777777777777766654 57777778887887777777788888888
Q ss_pred HHHHHHHHHHHhhhccCcee-e--Eeecc-----cc---ceeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhh
Q 001536 923 LKRQLTWQFNGHLGKKGISG-K--ININY-----EE---KTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALH 991 (1058)
Q Consensus 923 ~~~~~~~~f~~~~~~~~~~g-~--~~~~~-----~~---~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~ 991 (1058)
....+......-++.+++.+ . +.+.+ .. +.+.+.+..+++.|.+++. ...||||-|++.|||..++.
T Consensus 372 ~A~~L~~~v~~eL~~L~Me~a~F~ve~~~~~~~~t~~G~d~VeF~istNpG~~~~PL~--KvASGGELSRimLAlk~i~~ 449 (557)
T COG0497 372 AAKELEKEVTAELKALAMEKARFTVELKPLEESPTADGADKVEFLISTNPGEPLKPLA--KVASGGELSRIMLALKVILS 449 (557)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCcCCcceEEEEEeCCCCCCCccHH--hhcchhHHHHHHHHHHHHHh
Confidence 88888887777777776644 2 33332 12 2355677776444545443 34599999999999999999
Q ss_pred hhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEecCC
Q 001536 992 EMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQMAA 1055 (1058)
Q Consensus 992 ~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~~~ 1055 (1058)
...+.|.+||||||+|+.+.....+.+.|.+++ .++|||||||.|-....++.++.|.|-..
T Consensus 450 ~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls--~~~QVl~VTHlPQVAa~ad~H~~V~K~~~ 511 (557)
T COG0497 450 RKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLS--EHHQVLCVTHLPQVAAMADTHFLVEKESE 511 (557)
T ss_pred ccCCCCeEEEecccCCCChHHHHHHHHHHHHHh--cCceEEEEecHHHHHhhhcceEEEEEecC
Confidence 999999999999999999999999999999998 99999999999976677778888887543
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.95 E-value=5.4e-25 Score=252.34 Aligned_cols=198 Identities=15% Similarity=0.251 Sum_probs=132.2
Q ss_pred CeeEEEEEEEecccccC--ceeeeC-CCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhh-cCCceeEEEE
Q 001536 19 AGTITRVRLENFMCHSS--LQIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK-TGCSYAMVEV 94 (1058)
Q Consensus 19 ~m~i~~l~l~nf~~~~~--~~i~f~-~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~-~~~~~~~v~~ 94 (1058)
||+|++|++.||++|++ .+|+|+ +|+|+|+||||+|||||++||+|||||.+.+. .+...+++ .+...+.|++
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~---~~~~~~~~~~~~~~~~v~l 77 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRD---IKKGQLINSINKKDLLVEL 77 (562)
T ss_pred CceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCc---CCHHHhhccCCCCcEEEEE
Confidence 79999999999999975 478998 48999999999999999999999999987642 22234553 3456789999
Q ss_pred EEEeCCCCccCcccCCCeEEEEEEEecCcceEEEEcCCCceec--ccHHHHHHHHHh-cCCcccC--CeeeechhhhhHh
Q 001536 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVA--SRKQELLELIDH-FNIDVEN--PCVIMSQDKSREF 169 (1058)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~-~~~~~~~--~~~~~~q~~~~~~ 169 (1058)
+|..+ |..|.|.|.+..+...++. +|..++ .+..++...+.. +|++... ..++++|+.+..|
T Consensus 78 ~f~~~----------~~~y~i~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f 144 (562)
T PHA02562 78 WFEYG----------EKEYYIKRGIKPNVFEIYC---NGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPF 144 (562)
T ss_pred EEEEC----------CEEEEEEEeccCCeEEEec---CCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhH
Confidence 99876 3569999987644333333 566543 234566664444 4554333 3578999999999
Q ss_pred hhcCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 001536 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (1058)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 233 (1058)
+...+ .++...+....++..+...-....+.+...+..+..+..++..+..++..++..+..+
T Consensus 145 ~~~~~-~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~ 207 (562)
T PHA02562 145 MQLSA-PARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ 207 (562)
T ss_pred hcCCh-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 87654 3555555555555444443333455555555666666655555555555444444433
No 27
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.94 E-value=4.6e-26 Score=225.39 Aligned_cols=126 Identities=33% Similarity=0.469 Sum_probs=97.5
Q ss_pred eEEEEEEEecccc--cCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhc-----CCceeEEE
Q 001536 21 TITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVE 93 (1058)
Q Consensus 21 ~i~~l~l~nf~~~--~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~-----~~~~~~v~ 93 (1058)
+|.+|+|.||++| ...+++|+|++|+|+||||+|||||++||.||||+.+.+..|.....++|+. ....+.|+
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 5999999999999 5778999999999999999999999999999999988777888889999987 55679999
Q ss_pred EEEEeCCCCccCcccCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHHHhcCCcc
Q 001536 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDV 154 (1058)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 154 (1058)
+.|.+.+.. .......+.|.|.+. .+.+.|++ +|..+. ..++..++...++..
T Consensus 81 ~~~~~~~~~---~~~~~~~~~i~r~~~~~~~~~~~i---n~~~~~--~~~~~~~l~~~~i~~ 134 (220)
T PF02463_consen 81 LIFDNSDEE---FELDKKEIEISRRIDRKGRSEYKI---NGKKVR--LKDLEELLPEVGISP 134 (220)
T ss_dssp EEEECTTEE---SSSSSSEEEEEEEEETTS-EEEEE---TTEEE---HHHHHHHHHCTTTTT
T ss_pred ccccccccc---cccccccccccccccccccccccc---cccccc--ccccccccccccccc
Confidence 999876432 122345689999988 66678888 576664 378888777765554
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.92 E-value=2e-15 Score=184.34 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=45.5
Q ss_pred CCCchhHHHHHHHHHhhhh--cCCCeee---echhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCC
Q 001536 975 SGGERSFSTLCFALALHEM--TEAPFRA---MDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1040 (1058)
Q Consensus 975 SgGE~~~~~la~~~al~~~--~~~p~~v---~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1040 (1058)
|-|.=-++-+.|.+|+..+ ...||.| |||+ +-||+.| +..|++++...+-.+|.-+|.+.+
T Consensus 1122 S~G~syLi~~~~~i~l~~~lr~~~~~~ihwpiDEi-G~L~~~N----v~~l~~~~~~nnI~li~A~P~~~~ 1187 (1201)
T PF12128_consen 1122 SHGTSYLILCMFFIALTRMLRGDADFRIHWPIDEI-GKLHPNN----VKKLLDMCNSNNISLISAFPNPDS 1187 (1201)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCeEEEeeehhh-ccCChHH----HHHHHHHHHhCCceEEEeCCCCCh
Confidence 8898777777788888764 3456655 9999 6899999 566777775567777777777643
No 29
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.91 E-value=3.2e-21 Score=216.04 Aligned_cols=191 Identities=22% Similarity=0.313 Sum_probs=133.1
Q ss_pred eEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeCC
Q 001536 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (1058)
Q Consensus 21 ~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~~ 100 (1058)
+|.+|.|.||++|+..+|+|+||+|+|+||||||||+|++||.|++|++.. .++|+.|+..+.|++.|.+.+
T Consensus 1 Ml~~l~i~nf~~~~~~~i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~~--------~~~i~~~~~~~~v~~~f~~~~ 72 (563)
T TIGR00634 1 MLTELRINNFALIRVLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQRAG--------ASRVRSGENRAVVEGRFTTES 72 (563)
T ss_pred CceEEEEcceeeeeeeEEecCCCeEEEECCCCCCHHHHHHHHHHHhCcCch--------HHHhcCCCCeEEEEEEEccCC
Confidence 388999999999999999999999999999999999999999999998743 688999999999999998644
Q ss_pred CCc----cC----cccC--CCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHh
Q 001536 101 EDA----FK----PEIF--GDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (1058)
Q Consensus 101 ~~~----~~----~~~~--~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (1058)
... +. .... ++.+.|+|.+. +|++.|+| ||++++. ..+.++...+ +.+.+|.....+
T Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~i---Ng~~v~~--~~l~~l~~~l-------i~i~gQ~~~~~l 140 (563)
T TIGR00634 73 LDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYL---NGKPVSA--SSLLEFTSEL-------LDLHGQHDQQLL 140 (563)
T ss_pred CchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEE---CCEEccH--HHHHHHhcCe-------EEEECchHHHHh
Confidence 221 00 0111 34689999998 78899999 6888854 6888877543 223333332222
Q ss_pred hhcCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhH
Q 001536 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME 234 (1058)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (1058)
+ .+..+..++.....+..+...+......+..+...+.++.........+++.++.+++.++
T Consensus 141 ~---~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 141 F---RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred c---CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2 1122323332222234455566666666666666677666666666666666666666554
No 30
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.90 E-value=1.1e-14 Score=151.41 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=66.5
Q ss_pred eccccceeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHh---h----------hhcCCCeeeechhhhccChhh
Q 001536 946 INYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALAL---H----------EMTEAPFRAMDEFDVFMDAIS 1012 (1058)
Q Consensus 946 ~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al---~----------~~~~~p~~v~DE~~~~lD~~~ 1012 (1058)
+||.+ .+++.|....+..|.--...+.||.||---+.+++++-. | ++.||.++++||+ +.||...
T Consensus 1338 LDYRN-YLeLeVEV~RGaDGWLrAESGALSTGEAIGTGmSILlMVVQSWEEESRRlRgKDI~PCRLLFLDEA-ARLDaKS 1415 (1480)
T COG3096 1338 LDYRN-YLELEVEVNRGSDGWLRAESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKS 1415 (1480)
T ss_pred Hhhhh-hhheeEEEecCCcchhhhhccCcccccccccCchhhHHHHHHHHHHHHhcccCCCcchhhhhhhhh-hhccchh
Confidence 35544 356777666666666655678899999887776655432 2 2568889899999 7999987
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCCCCCCC
Q 001536 1013 RKISLDTLVDFALAQGSQWIFITPHDVGLVK 1043 (1058)
Q Consensus 1013 ~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1043 (1058)
+..|.+++..-.+|.|+-.|.++++..
T Consensus 1416 ----IaTLFELCERLdMQLlIAAPENISPEK 1442 (1480)
T COG3096 1416 ----IATLFELCERLDMQLIIAAPENISPEK 1442 (1480)
T ss_pred ----HHHHHHHHHHhhhhhhhcccccCCccc
Confidence 567777765568999998888876653
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.89 E-value=3.6e-16 Score=190.99 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 001536 871 SESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGIS 941 (1058)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 941 (1058)
...|+.+..+++.+......+...+..+..... ..+...|. .+-..+...|..+|.++.+.+.+.
T Consensus 976 ~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~---~~f~~~f~---~In~~F~~if~~L~~GG~a~L~l~ 1040 (1163)
T COG1196 976 EERYEELKSQREDLEEAKEKLLEVIEELDKEKR---ERFKETFD---KINENFSEIFKELFGGGTAELELT 1040 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHhCCCCeeEEEeC
Confidence 445667777888888888888887777777764 33344444 444555566678888766665433
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.88 E-value=4e-16 Score=172.04 Aligned_cols=490 Identities=13% Similarity=0.206 Sum_probs=323.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001536 186 TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQ 265 (1058)
Q Consensus 186 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1058)
..|..+...+....+.+......+..+++++...+..+..+...-...+....++.++.|....-...++......+...
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~ 293 (1074)
T KOG0250|consen 214 ESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKK 293 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556777777777777888888888888888777777777777778888999999998888888888889999999
Q ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001536 266 TLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSY 345 (1058)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1058)
+.....++..++.....+..+...+...+..+..+.........++..+...+..+......++.++....+.+...+..
T Consensus 294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~ 373 (1074)
T KOG0250|consen 294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKE 373 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001536 346 MQKMVNRVKGLEQQV-HDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEI 424 (1058)
Q Consensus 346 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 424 (1058)
+..+...|..++.+. ..+..++ ...+.++..+..++..++..+..+..+...+.+.+.....+....+..+..+...+
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~-~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSEL-EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888888888888887 4444443 66667788899999999999999999999999888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCcccHHHHHHHHHhhccCCCCCCcccccccEEecCCCChHHHHHHHHhcccc
Q 001536 425 EDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLN 504 (1058)
Q Consensus 425 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (1058)
+.....+..+...-..--..+...+ +.+...++.-...-..-+.||+|.+..+...+|....+.++.+++.+++.
T Consensus 453 ~~~~~~l~~lk~~k~dkvs~FG~~m-----~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv 527 (1074)
T KOG0250|consen 453 ENISEELKDLKKTKTDKVSAFGPNM-----PQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIV 527 (1074)
T ss_pred HHHHHHHHHHHhcccchhhhcchhh-----HHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhhee
Confidence 8888888888766555444454444 33334443333321223457788887777777745667777777777665
Q ss_pred ceeecchhhHHHHHHHHHH---hcCCCccEEEEecCC---CCCCCCC-CCCCCCCCCchhhc----------cccCc-HH
Q 001536 505 AFIVTDHKDALLLRGCARE---ANYNHLQIIIYDFSR---PRLSLPH-HMLPHTKHPTTLSV----------LQSDN-PT 566 (1058)
Q Consensus 505 ~~v~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~l~~----------l~~~~-~~ 566 (1058)
+--.+..-....+..+..+ ..+....+.+.++.. +.+..|. ......+-+.|+.. |...+ ..
T Consensus 528 ~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~E 607 (1074)
T KOG0250|consen 528 TSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKE 607 (1074)
T ss_pred CCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHH
Confidence 5555444433333333222 122222232222221 1111111 01111222333322 22222 33
Q ss_pred HHHHhhccCCccEEEEecChHHHHHHhhhcCCCCcceEEccCC-C-eeeecCCccccccccccccCccccCCHHHHHHHH
Q 001536 567 VINVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDG-H-KMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDL 644 (1058)
Q Consensus 567 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 644 (1058)
+..++...........+-.. .+. .++...+ . +.++.+.... .+..-..........++.++..+
T Consensus 608 a~~~m~s~~~p~n~~~aytl--------dg~-----~~~~~g~~~~~ySt~~~~~r-~~~~~~~s~d~~ie~le~e~~~l 673 (1074)
T KOG0250|consen 608 AREFMQSDKPPANVTKAYTL--------DGR-----QIFAGGPNYRVYSTRGTRAR-RPGVDEFSFDDEIEDLEREASRL 673 (1074)
T ss_pred HHHHHhcCCCCccceeeecc--------Ccc-----ccccCCCCcceeccCCCCCC-CccccchhHhHHHHHHHHHHHHH
Confidence 33444322111111100000 000 1111000 1 1112222211 11111111222334677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 645 ERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKEL 695 (1058)
Q Consensus 645 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1058)
+.++..+.....+++..+..++..+..+...+...+..+..+..++..++.
T Consensus 674 ~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 674 QKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888777777777776
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.2e-14 Score=160.28 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHH-HH---HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 848 TPEQLSAQVNRL-NQ---RLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLL 923 (1058)
Q Consensus 848 ~~~~l~~~l~~l-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 923 (1058)
.+.-++.++..+ +- -+..+... ...|......|+....+.++..+.+..|+... +++ ...-|.-+-..+
T Consensus 1079 ~i~~lE~~~~~l~~vd~~~i~eY~~k-~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~R--ldE----Fm~gf~~Is~kL 1151 (1293)
T KOG0996|consen 1079 KIALLEKRVEELREVDLGVIAEYAKK-VELYLKRVAELEKFTQKRDEHREKLEELRKRR--LDE----FMAGFNIISMKL 1151 (1293)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHH
Confidence 355567777776 22 22333332 33566666777888888888888888887754 222 222333333444
Q ss_pred HHHHHHHHHHhhhccCceeeEeeccccceeEEEEecCCCCCCCccc
Q 001536 924 KRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVR 969 (1058)
Q Consensus 924 ~~~~~~~f~~~~~~~~~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~ 969 (1058)
.+.+..+--++=+.+.+.. .+|+-..|+.+.|.||.+ .++.+.
T Consensus 1152 kemYQmIT~GGdAeLElVD--slDPFseGV~FSVrPpKK-SWK~I~ 1194 (1293)
T KOG0996|consen 1152 KEMYQMITLGGDAELELVD--SLDPFSEGVMFSVRPPKK-SWKNIS 1194 (1293)
T ss_pred HHHHHHHhcCCcceeEeec--cCCCcccCceEEeeCchh-hhhhcc
Confidence 4445555556677776666 468888899999998776 444333
No 34
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.86 E-value=9.2e-15 Score=185.77 Aligned_cols=139 Identities=13% Similarity=0.160 Sum_probs=70.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CC--chhhhhcCCCCCCCHHHHHHHH
Q 001536 781 EIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVI--CP--ESEIEALGGWDGSTPEQLSAQV 856 (1058)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~l~~~l 856 (1058)
.+...+..+...+..+...+ ..+...+..+...+..+...+..+....... .+ ......+ ...+..+..++
T Consensus 893 ~l~~~~~~l~~~~~~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~l~~~i 967 (1164)
T TIGR02169 893 ELEAQLRELERKIEELEAQI-EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV----QAELQRVEEEI 967 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHH----HHHHHHHHHHH
Confidence 33333333334444444444 4445555555555666555555443322110 00 0001110 33455666666
Q ss_pred HHHHH----HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 857 NRLNQ----RLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQF 931 (1058)
Q Consensus 857 ~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 931 (1058)
..+.. .+..+. .+...|..+..+++.+......+...+..+..... ..+...|..+...|.. .|..+|
T Consensus 968 ~~l~~vN~~Ai~~~~-~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~---~~f~~~f~~~~~~f~~---~~~~l~ 1039 (1164)
T TIGR02169 968 RALEPVNMLAIQEYE-EVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR---EVFMEAFEAINENFNE---IFAELS 1039 (1164)
T ss_pred HHcCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHh
Confidence 55532 111111 14556778888888899988888888888886654 3334444444444444 444455
No 35
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.8e-13 Score=146.79 Aligned_cols=291 Identities=12% Similarity=0.207 Sum_probs=135.8
Q ss_pred hHhhhc---CCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHh--------
Q 001536 167 REFLHS---GNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEH-------- 235 (1058)
Q Consensus 167 ~~~l~~---~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 235 (1058)
..|+++ ..+++++..+..+..|-............+.+....+..+...+.....++..++.++..++.
T Consensus 215 s~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~ 294 (1174)
T KOG0933|consen 215 SQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGG 294 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344444 345666666666666655555555555555666666666666655555555555555555432
Q ss_pred -HHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001536 236 -VEEITQDLQRLKKKLAW--SWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTS 312 (1058)
Q Consensus 236 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1058)
...+..++..+...... ..+......+......++.+...+.+....+..-+..+.........+..........+.
T Consensus 295 ~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e 374 (1174)
T KOG0933|consen 295 EVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLE 374 (1174)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 22333333333333321 111122223333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001536 313 EVRRRKDELQQSI-------SLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKEL 385 (1058)
Q Consensus 313 ~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 385 (1058)
..+..+..+..-+ ..+..++..+...+......+....-+++.+..++.....+. ..........
T Consensus 375 ~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~--------~t~~~~~~~~ 446 (1174)
T KOG0933|consen 375 KAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGEL--------ATASAEYVKD 446 (1174)
T ss_pred HHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh--------hhhhHHHHHH
Confidence 3333333332221 123333333333444444444444444444444443333322 3333333333
Q ss_pred HHHHHHHHHHHHHhHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccHHHHHH
Q 001536 386 QCEIDAANITLSRMKEEDSALS---EKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLR 462 (1058)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 462 (1058)
...+..++..++.++.++..+. .....+......+...+..+...+..+.+.+..+.-.+.++...|++..|.+++.
T Consensus 447 ~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va 526 (1174)
T KOG0933|consen 447 IEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVA 526 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHH
Confidence 3344444444444444444332 2233445555666666777777777777777777777777777776555666665
Q ss_pred HHH
Q 001536 463 AIE 465 (1058)
Q Consensus 463 ~~~ 465 (1058)
.+-
T Consensus 527 ~Li 529 (1174)
T KOG0933|consen 527 KLI 529 (1174)
T ss_pred HHh
Confidence 543
No 36
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.81 E-value=1.1e-12 Score=167.87 Aligned_cols=169 Identities=16% Similarity=0.253 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001536 196 QSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDR 275 (1058)
Q Consensus 196 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1058)
..+...+......+..+...+..+..++..+..+...+..+..+..++..+...+....+..+...+..+...+..+...
T Consensus 168 ~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (1179)
T TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEE 247 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888888888888889999999999999988889899988888888777777888888888888888888
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001536 276 IPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKG 355 (1058)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1058)
+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+...+..+...+..+..++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 327 (1179)
T TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEE 327 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888877777777777776666666666666665555555555555
Q ss_pred HHHHHHHHH
Q 001536 356 LEQQVHDIQ 364 (1058)
Q Consensus 356 ~~~~~~~~~ 364 (1058)
+...+..+.
T Consensus 328 ~~~~~~~~~ 336 (1179)
T TIGR02168 328 LESKLDELA 336 (1179)
T ss_pred HHHHHHHHH
Confidence 555444443
No 37
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.78 E-value=3.4e-18 Score=171.88 Aligned_cols=148 Identities=27% Similarity=0.411 Sum_probs=114.8
Q ss_pred eeEEEEEEEecccccCcee--eeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcC----CceeEEE
Q 001536 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTG----CSYAMVE 93 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i--~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~----~~~~~v~ 93 (1058)
|+|++|+|.||++|.+.++ +|+||+|+|+||||||||||++||+|+||.......|.....++++.+ ...+.|.
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 7899999999999998886 999999999999999999999999999997654445666666777653 3467999
Q ss_pred EEEEeCCCCccCcc-cCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhhh
Q 001536 94 VELKNRGEDAFKPE-IFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1058)
Q Consensus 94 ~~~~~~~~~~~~~~-~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1058)
+.|.+.+...+.+. ...+.++|.|.+. .....|++ +|+.. ...++.+++..+|+..+++++++.|+++..++.
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~i---n~~~~--~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLI---NGHRA--QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEE---CCEEe--eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 99998643211110 1234799999988 44445555 34333 336888999999999888899999999998876
Q ss_pred c
Q 001536 172 S 172 (1058)
Q Consensus 172 ~ 172 (1058)
.
T Consensus 156 ~ 156 (251)
T cd03273 156 M 156 (251)
T ss_pred h
Confidence 6
No 38
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.77 E-value=1.6e-15 Score=170.33 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 846 GSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQ---TYQAFREKVRACREALDSRWGKFQRNATL 922 (1058)
Q Consensus 846 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 922 (1058)
+..+++++.++..+....++ ....++++...++.+..++..+.. .++.+...+..+...+...-..+......
T Consensus 300 p~~L~ele~RL~~l~~LkrK----yg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRK----YGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777766664444 556677777777777777766653 57777777777777777776777778888
Q ss_pred HHHHHHHHHHHhhhccCcee-eE--eeccc----------c---ceeEEEEecCCCCCCCcccCC-ccCCCCchhHHHHH
Q 001536 923 LKRQLTWQFNGHLGKKGISG-KI--NINYE----------E---KTLSIEVKMPQDASSSNVRDT-RGLSGGERSFSTLC 985 (1058)
Q Consensus 923 ~~~~~~~~f~~~~~~~~~~g-~~--~~~~~----------~---~~l~i~v~~~~~~~~~~~~~~-~~lSgGE~~~~~la 985 (1058)
....|...+...+..+|+.+ .+ .+... . +.+.+.+.++ +|.++.++ ..+||||+++++||
T Consensus 376 ~a~~l~~~v~~~l~~L~m~~~~f~v~~~~~~~~~~~~~~~~~G~d~v~f~~~~n---~g~~~~pl~~~lSgGe~~rv~la 452 (563)
T TIGR00634 376 AAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSAN---TGEPVKPLAKVASGGELSRVMLA 452 (563)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEeecCccccccCCCCCCceEEEEEEecC---CCCCCCChhhhcCHhHHHHHHHH
Confidence 88888888888888887754 22 22111 1 1355666654 44455555 57999999999999
Q ss_pred HHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEe
Q 001536 986 FALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1052 (1058)
Q Consensus 986 ~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1052 (1058)
+.+++....+.|++||||||+|+|+..+..+...|.+++ .+.|||||||++..+..++..+.|++
T Consensus 453 ~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~--~~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 453 LKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS--ERHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred HHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEEChHHHHHhcCeEEEEEE
Confidence 999887666789999999999999999999999999987 68999999999854443444566655
No 39
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=2.8e-17 Score=164.32 Aligned_cols=139 Identities=27% Similarity=0.349 Sum_probs=112.2
Q ss_pred EEEEEEEecccccC-ceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCc------eeEEEE
Q 001536 22 ITRVRLENFMCHSS-LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (1058)
Q Consensus 22 i~~l~l~nf~~~~~-~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~------~~~v~~ 94 (1058)
|++|.|.||++|.+ .+|+|.+++++|+||||||||||++||+|++++.+.. .|.....++|+.+.. .+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~-~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSH-LRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeeecCCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc-ccccchhhhcccCccccCCCceEEEEE
Confidence 67999999999964 5799999999999999999999999999999876433 466667788888765 789999
Q ss_pred EEEeCCCCccCcccCCCeEEEEEEEecCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhhhcCC
Q 001536 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGN 174 (1058)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 174 (1058)
.|.+.+ +....+.|.+..+...|.+ +|+.++ ..++.+++..+|++++.+.+++.|+++..+....+
T Consensus 80 ~f~~~~---------~~~~~~~~~~~~~~~~~~i---ngk~~s--~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 80 VYEDDD---------GEEKTFRRIITGGSSSYRI---NGKVVS--LKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred EEEcCC---------CcEEEEEEEEECCceEEEE---CCEEec--HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 998753 2345666666666677777 566553 46888999999999988888899999999988765
Q ss_pred c
Q 001536 175 D 175 (1058)
Q Consensus 175 ~ 175 (1058)
+
T Consensus 146 ~ 146 (247)
T cd03275 146 P 146 (247)
T ss_pred c
Confidence 3
No 40
>PRK02224 chromosome segregation protein; Provisional
Probab=99.75 E-value=8.6e-11 Score=142.78 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhhhccCceeeEeeccccceeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhhhh------
Q 001536 920 ATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM------ 993 (1058)
Q Consensus 920 ~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~------ 993 (1058)
...+...|+.+|..+|.. +....+.++ .++. +.+.-+ +|. ..++..||||++..++|||++|++..
T Consensus 736 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~-~~~~--i~~~~~---~g~-~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~ 807 (880)
T PRK02224 736 VETLERMLNETFDLVYQN-DAYSHIELD-GEYE--LTVYQK---DGE-PLEPEQLSGGERALFNLSLRCAIYRLLAEGIE 807 (880)
T ss_pred HHHHHHHHHHHHHHHcCC-CCeeEEEec-CCcc--eeeeCC---CCC-ccChhhcCccHHHHHHHHHHHHHHHHhhhccc
Confidence 344445556666654432 122234333 2333 333221 333 33678899999999999999988753
Q ss_pred --cCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEecC
Q 001536 994 --TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQMA 1054 (1058)
Q Consensus 994 --~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~~ 1054 (1058)
.|.|++|||||+++||+.++..++..|..+.....+|||||||++..+..++..+.|++-+
T Consensus 808 ~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~~ 870 (880)
T PRK02224 808 GDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVEKDP 870 (880)
T ss_pred CCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEeecCC
Confidence 2346788999999999999988888887765222469999999996454444456665543
No 41
>PRK14079 recF recombination protein F; Provisional
Probab=99.74 E-value=2.9e-16 Score=163.87 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=93.7
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|.|.||++|.+.+++|+||+|+|+||||+|||||++||.|++||. .|.....++|+.|...+.|.+.|...
T Consensus 1 M~i~~l~l~nfRn~~~~~l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs----~r~~~~~~lI~~g~~~~~v~~~~~~~ 76 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTLAFPPGVTAVVGENAAGKTNLLEAIYLALTGE----LPNGRLADLVRFGEGEAWVHAEVETG 76 (349)
T ss_pred CEEEEEEEeccCCcccceEEeCCCeEEEECCCCCCHHHHHHHHHHHhcCC----CCCCcHHhheecCCCcEEEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999883 35566789999999999999999765
Q ss_pred CCCccCcccCCCeEEEEEEEecCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhH
Q 001536 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSRE 168 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 168 (1058)
+ ..+.+...+..+++.+++ ||+.+ +..++..++ +++++.|+...-
T Consensus 77 ~----------~~~~~~~~~~~~~~~~~i---ng~~~--~~~~l~~~~---------~~v~~~p~d~~l 121 (349)
T PRK14079 77 G----------GLSRLEVGLGPGRRELKL---DGVRV--SLRELARLP---------GAVLIRPEDLEL 121 (349)
T ss_pred C----------CeEEEEEEEEcCceEEEE---CCeec--CHHHHHhhh---------cEEEEecCchHh
Confidence 2 224455555545567888 57766 334555543 344456666544
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.73 E-value=2.5e-14 Score=164.54 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCceeeEeeccccceeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhhhh-----
Q 001536 919 NATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM----- 993 (1058)
Q Consensus 919 ~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~----- 993 (1058)
........|+..+..++..++ +.+.+..+ .++...+.. .|....++..|||||+.+++||++|++...
T Consensus 421 i~~~~l~~~n~~~~~~L~~l~--~~~~~~~~-~~~~~~~~~----~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~ 493 (562)
T PHA02562 421 IIKKYIPYFNKQINHYLQIME--ADYNFTLD-EEFNETIKS----RGREDFSYASFSQGEKARIDLALLFTWRDVASKVS 493 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--eeEEEEec-hhhhhHHhc----CCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhc
Confidence 344455666666666666544 23323222 223333433 222233678899999999999999885322
Q ss_pred -cCCCeeeechhh-hccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEe
Q 001536 994 -TEAPFRAMDEFD-VFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1052 (1058)
Q Consensus 994 -~~~p~~v~DE~~-~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1052 (1058)
.+.+++|||||+ ++||+..+..++..|..+ .+.+||+|||++..+..++..+.|.+
T Consensus 494 ~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~~~~~~d~~~~l~~ 551 (562)
T PHA02562 494 GVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDHDPQKFDRHLKMEK 551 (562)
T ss_pred CCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchhchhhhhcEEEEEE
Confidence 367899999997 789999988877777765 47899999999754544544566655
No 43
>PRK00064 recF recombination protein F; Reviewed
Probab=99.73 E-value=4.8e-16 Score=163.40 Aligned_cols=111 Identities=26% Similarity=0.414 Sum_probs=91.3
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|.|.||++|.+.+++|+||+|+|+||||+|||||++||.+++++.+. |.....++|+.|...+.|++.|.++
T Consensus 1 M~i~~l~i~nfr~~~~~~l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~---r~~~~~~li~~g~~~~~v~~~~~~~ 77 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSH---RTARDKELIRFGAEAAVIHGRVEKG 77 (361)
T ss_pred CEEEEEEEeCCCcccceEEEecCCeEEEECCCCCCHHHHHHHHHHhCCCCCc---cCCChhHHHhcCCCcEEEEEEEEeC
Confidence 7899999999999999999999999999999999999999999998887653 6667789999999999999999764
Q ss_pred CCCccCcccCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHH
Q 001536 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELI 147 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 147 (1058)
+..+.|.|.+. .+++.|.+ ||+.+. +..++..++
T Consensus 78 ----------~~~~~i~~~~~~~~~~~~~i---ng~~~~-~~~~l~~~~ 112 (361)
T PRK00064 78 ----------GRELPLGLEIDKKGGRKVRI---NGEPQR-KLAELAGLL 112 (361)
T ss_pred ----------CcEEEEEEEEEcCCceEEEE---CCcccc-CHHHHhhhc
Confidence 23478888877 45577888 576663 224444444
No 44
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.2e-16 Score=158.70 Aligned_cols=100 Identities=24% Similarity=0.415 Sum_probs=85.6
Q ss_pred EEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeCCC
Q 001536 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (1058)
Q Consensus 22 i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~~~ 101 (1058)
|.+|.|.||++|.+.+++|++|+|+|+||||||||||++||.|++|+.+ .|.....++++.|...+.|++.|.+.+
T Consensus 1 l~~l~i~nfr~~~~~~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~---~r~~~~~~~i~~~~~~~~v~~~f~~~~- 76 (270)
T cd03242 1 LKSLELRNFRNYAELELEFEPGVTVLVGENAQGKTNLLEAISLLATGKS---HRTSRDKELIRWGAEEAKISAVLERQG- 76 (270)
T ss_pred CcEEEEeCCcCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHhccCCC---CCCCCHHHHHhcCCCCEEEEEEEEeCC-
Confidence 5789999999999999999999999999999999999999999999865 355567899999999999999998753
Q ss_pred CccCcccCCCeEEEEEEEe-cCcceEEEEcCCCceec
Q 001536 102 DAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVA 137 (1058)
Q Consensus 102 ~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~ 137 (1058)
..+.+.|.+. ++++.|++ ||..++
T Consensus 77 ---------~~~~i~~~~~~~~~~~~~i---ng~~~~ 101 (270)
T cd03242 77 ---------GELALELTIRSGGGRKARL---NGIKVR 101 (270)
T ss_pred ---------CeEEEEEEEEcCCceEEEE---CCeecc
Confidence 2478889886 56778888 566554
No 45
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.3e-16 Score=162.05 Aligned_cols=113 Identities=30% Similarity=0.443 Sum_probs=92.5
Q ss_pred EEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeCCC
Q 001536 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (1058)
Q Consensus 22 i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~~~ 101 (1058)
|.+|+|.||++|...+|+|+||+|+|+|||||||||||+||.|++|+.+. .++++.|...+.|+++|.+.+.
T Consensus 1 l~~l~i~nf~~~~~~~i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 72 (276)
T cd03241 1 LLELSIKNFALIEELELDFEEGLTVLTGETGAGKSILLDALSLLLGGRAS--------ADLIRSGAEKAVVEGVFDISDE 72 (276)
T ss_pred CcEEEEeCccceeeeEEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCCh--------HHHhhCCCCeEEEEEEEecCCc
Confidence 57899999999999999999999999999999999999999999998743 6888999999999999987543
Q ss_pred Cc------cCcccCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHH
Q 001536 102 DA------FKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELI 147 (1058)
Q Consensus 102 ~~------~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 147 (1058)
.. +....+++.++|+|.+. ++++.|++ ||+.++ .+.+.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~I---ng~~vs--l~~l~~i~ 120 (276)
T cd03241 73 EEAKALLLELGIEDDDDLIIRREISRKGRSRYFI---NGQSVT--LKLLRELG 120 (276)
T ss_pred hHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEE---CCEEEC--HHHHHHHH
Confidence 21 00012356799999998 77889999 677764 46777765
No 46
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.68 E-value=5.1e-17 Score=115.45 Aligned_cols=49 Identities=35% Similarity=0.489 Sum_probs=45.5
Q ss_pred EEEEEEEecccccCceeeeCC-C-eEEEEcCCCCcHHHHHHHHHHHhcCCc
Q 001536 22 ITRVRLENFMCHSSLQIELGE-W-VNFITGQNGSGKSAILTALCIAFGCRA 70 (1058)
Q Consensus 22 i~~l~l~nf~~~~~~~i~f~~-~-~~~I~G~NgsGKStil~ai~~~lg~~~ 70 (1058)
+.+|.|.||++|.+.+++|++ | +++|+||||||||||||||.|+|++..
T Consensus 1 L~rl~L~Nw~~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 468999999999989999985 3 899999999999999999999999877
No 47
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.68 E-value=1.7e-16 Score=152.87 Aligned_cols=80 Identities=39% Similarity=0.717 Sum_probs=73.8
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|.|.+|+|.||++|++.+|+|+||+|+|+|+||+|||||++||+++||+.+....|...+.++++.|...+.|++.|.+.
T Consensus 1 ~~i~~i~i~nfr~~~~~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 80 (213)
T cd03277 1 GSIVRIKLENFVTYDETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN 80 (213)
T ss_pred CeeEEEEEeCCCCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeC
Confidence 46999999999999989999999999999999999999999999999998876667778899999999999999999775
No 48
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.2e-08 Score=111.14 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001536 199 YNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPR 278 (1058)
Q Consensus 199 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (1058)
.++..+.-..+.+....-..+...+..+.+.+..+++-.+-...+..+.......+|.-+..++.+...++..+......
T Consensus 169 eerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~ 248 (1200)
T KOG0964|consen 169 EERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSS 248 (1200)
T ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 45556666777888878888888888888888888776666677777777777677777888899999999888876554
Q ss_pred HHHhHHHH
Q 001536 279 CQAKIDSR 286 (1058)
Q Consensus 279 ~~~~~~~~ 286 (1058)
.-..-.+.
T Consensus 249 ~~e~s~~~ 256 (1200)
T KOG0964|consen 249 APEESEQY 256 (1200)
T ss_pred cchhhhhH
Confidence 44433333
No 49
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.64 E-value=2.3e-08 Score=121.72 Aligned_cols=66 Identities=8% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001536 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSF 704 (1058)
Q Consensus 639 ~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 704 (1058)
..+.+++..+..+...+..+..+...+..+...+...+.+.+..+..+......+..+++.+..++
T Consensus 1245 ~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~ql 1310 (1930)
T KOG0161|consen 1245 AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQL 1310 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333344444444444444444444444444444444444444444433
No 50
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.3e-08 Score=110.93 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hCCchhhhh
Q 001536 770 DTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASV---------ICPESEIEA 840 (1058)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~ 840 (1058)
+.....+.++...+..+..+..++..+...+ ..++..+.....+...+-..+.--.-.+.. .....+...
T Consensus 849 ~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i-~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~ 927 (1141)
T KOG0018|consen 849 SKFEKKEDEINEVKKILRRLVKELTKLDKEI-TSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSG 927 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceeccccccc
Confidence 3444555566666666666666666666666 566666666555555544332211100000 001111111
Q ss_pred cCCC--CCCCHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 841 LGGW--DGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQR 918 (1058)
Q Consensus 841 ~~~~--~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~ 918 (1058)
+... -...+++....+.++...++.+..--...+.+...+++.+...-.....+...+++... ......|..+..
T Consensus 928 L~~~y~L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~~~~~~~EfE~ark~ak~ak~~F~~VK~~R~---~~F~~~F~~va~ 1004 (1141)
T KOG0018|consen 928 LPREYKLQQKLEEKQSVLNRIAPNLKALERLDEVRFQEINEEFEAARKEAKKAKNAFNKVKKKRY---ERFMACFEHVAD 1004 (1141)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCcchHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 1100 03455555555555544443332211112555666666666655555555555555442 223344455555
Q ss_pred HHHHHHHHHHHHHHHhhhccCceeeEeeccccceeEEEEecCCCC
Q 001536 919 NATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDA 963 (1058)
Q Consensus 919 ~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~~~~l~i~v~~~~~~ 963 (1058)
.++.|...+...++. +-+|.... -++--+||.....||+++
T Consensus 1005 ~Id~IYK~Ltnt~g~--AyL~~en~--~EPyl~GIky~~~pP~KR 1045 (1141)
T KOG0018|consen 1005 NIDRIYKELTNTEGQ--AYLGLENP--EEPYLDGIKYHCMPPGKR 1045 (1141)
T ss_pred HHHHHHHHhcccccc--eeecCCCC--CcchhcCccccccCCccc
Confidence 666666666544433 22233321 122234566666565553
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.62 E-value=2.2e-08 Score=121.80 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001536 643 DLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFA 705 (1058)
Q Consensus 643 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 705 (1058)
.+...+.+.+..+..+......+..+++.++.++..-.+....+...+..++.+...+..+++
T Consensus 1277 ~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~le 1339 (1930)
T KOG0161|consen 1277 ELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLE 1339 (1930)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333334444444444444443333
No 52
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.62 E-value=5.4e-15 Score=149.06 Aligned_cols=142 Identities=23% Similarity=0.374 Sum_probs=104.7
Q ss_pred EEEEEEEecccccCcee--eeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCc----eeEEEEE
Q 001536 22 ITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAMVEVE 95 (1058)
Q Consensus 22 i~~l~l~nf~~~~~~~i--~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~----~~~v~~~ 95 (1058)
|++|+|.||++|.+..+ +|++++|+|+|||||||||||+||.|+||...+. .|.....++++.|.. .++|++.
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTH-LREEQRQALLHEGSGPSVMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhh-hhhhhHHHhEeCCCCCCCceEEEEEE
Confidence 67999999999987766 8999999999999999999999999999876654 555555677876654 5788999
Q ss_pred EEeCCCCccCcccCCCeEEEEEEEecCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhhHhhhc
Q 001536 96 LKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (1058)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 172 (1058)
|.+.+.. + + .....+.+.|.+......+.++ +..+ +..++..++..+++...++.+.++++.+..++..
T Consensus 80 ~~~~~~~-~-~-~~~~~~~i~r~ig~~~~~~~l~---~~~~--t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l 148 (243)
T cd03272 80 FDNSDNR-F-P-IDKEEVRLRRTIGLKKDEYFLD---KKNV--TKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNM 148 (243)
T ss_pred EEcCCCc-c-C-CCCCEEEEEEEEECCCCEEEEC---CeEc--CHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhc
Confidence 9765321 1 1 1235688999887545566663 4333 3367888888888877666677777777665444
No 53
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.62 E-value=1e-15 Score=142.61 Aligned_cols=78 Identities=33% Similarity=0.501 Sum_probs=69.1
Q ss_pred EEEEEEEecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccch---hhhhhcCCceeEEEEEEE
Q 001536 22 ITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL---KDFIKTGCSYAMVEVELK 97 (1058)
Q Consensus 22 i~~l~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~---~~~i~~~~~~~~v~~~~~ 97 (1058)
|.+|++.||++|...++.|.++ +|+|+||||+|||||++||+|++|+.+....+...+ .++++.+...++|+|+|.
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~ 80 (178)
T cd03239 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFD 80 (178)
T ss_pred CcEEEEECccCCCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEE
Confidence 5789999999999888877666 999999999999999999999999998876666654 778899999999999998
Q ss_pred eC
Q 001536 98 NR 99 (1058)
Q Consensus 98 ~~ 99 (1058)
+.
T Consensus 81 ~~ 82 (178)
T cd03239 81 KS 82 (178)
T ss_pred Cc
Confidence 65
No 54
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=9.7e-14 Score=145.30 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=70.9
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|.|.||++|.+.+++|+||+|+|+||||+|||||++||.+++++.+. |.....++|+.|...+.|.+.|.++
T Consensus 1 M~l~~L~i~nFR~~~~~~l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s~---R~~~~~~li~~g~~~~~v~~~~~~~ 77 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSH---RTSRDKPLIRFGAEAFVIEGRVSKG 77 (365)
T ss_pred CEEEEEEEeCCcceeeeEEEECCCeEEEECCCCCCHHHHHHHHHHHcccCCc---cccchhhHHhCCCCeEEEEEEEEeC
Confidence 8999999999999999999999999999999999999999999998877553 6666789999999999999999865
Q ss_pred C
Q 001536 100 G 100 (1058)
Q Consensus 100 ~ 100 (1058)
+
T Consensus 78 ~ 78 (365)
T TIGR00611 78 D 78 (365)
T ss_pred C
Confidence 3
No 55
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.59 E-value=9.6e-14 Score=139.05 Aligned_cols=122 Identities=24% Similarity=0.408 Sum_probs=92.4
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|.+.||++|.+.+++|+||+|+++|+||+|||+||+||.++-.|++. |.....++|+.+++.+.|...+...
T Consensus 1 M~l~~L~L~nFRNy~~~~l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~---Rt~~~~~lir~~~~~~~i~~~v~~~ 77 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDLDLSPGVNVLVGENGQGKTNLLEAIYLLALGRSH---RTSRDKELIRTGADEAEISARVQRK 77 (363)
T ss_pred CceeeeehhhcCCcccceeccCCCcEEEECCCCCchHHHHHHHHHHccccCc---cccchhHHHhcCCccEEEEEEEeec
Confidence 8899999999999999999999999999999999999999999988777664 6667789999999999999998876
Q ss_pred CCCccCcccCCCeEEEEEEEe-cCcceEEEEcCCCceecccHHHHHHHHHhcCCcccCCeeeechhhhh
Q 001536 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSR 167 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 167 (1058)
+ ...++.-.+. .|+....+ ||..+. .+.+++..+ +++++.|+...
T Consensus 78 ~----------~~~~~~~~~~~~g~~~vri---ng~~~~----~~~el~g~l------~~vlf~Pedl~ 123 (363)
T COG1195 78 G----------REGTLGLQISKKGRRRVRI---NGTKAR----KLAELAGHL------NVVLFTPEDLG 123 (363)
T ss_pred c----------ceeeeEEEeccCcceEEEE---CCcccc----cHHHHhhhC------ceEEecccccc
Confidence 2 2344444444 44455677 454432 344555444 44555555443
No 56
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=5e-15 Score=141.29 Aligned_cols=79 Identities=59% Similarity=0.896 Sum_probs=72.9
Q ss_pred EEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEEEeCC
Q 001536 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (1058)
Q Consensus 22 i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~~ 100 (1058)
|.+|+|.||++|.+.+|+|++|+|+|+||||+|||||++||.+++|+......|+..+.++++.|...+.|.++|.+.+
T Consensus 1 i~~l~l~nfr~~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~ 79 (198)
T cd03276 1 IESITLKNFMCHRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG 79 (198)
T ss_pred CeEEEEeCccceeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999987766678788999999999999999999864
No 57
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.57 E-value=8.9e-08 Score=105.72 Aligned_cols=177 Identities=14% Similarity=0.158 Sum_probs=144.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001536 186 TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQ 265 (1058)
Q Consensus 186 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1058)
..+..++.....+...+......+..++..++.+...++.+.+.......++-+.....|....-...++.........+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~ 260 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRA 260 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHH
Confidence 34556667778888888889999999999999999999999998888888888888888887777777777888888888
Q ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001536 266 TLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSY 345 (1058)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1058)
..++..+......+....+.++.+...+...+......+......+.+.-..+......+.........+..........
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~ 340 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKR 340 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888877777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001536 346 MQKMVNRVKGLEQQVHD 362 (1058)
Q Consensus 346 ~~~~~~~~~~~~~~~~~ 362 (1058)
+......+..++.++..
T Consensus 341 i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 341 IEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 77777777777776654
No 58
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.52 E-value=4.5e-14 Score=139.27 Aligned_cols=49 Identities=37% Similarity=0.617 Sum_probs=43.8
Q ss_pred EEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccC
Q 001536 24 RVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72 (1058)
Q Consensus 24 ~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~ 72 (1058)
+|+|.||++|.+.+|+|+||+|+|+||||+|||||++||.|||||.++.
T Consensus 1 ~i~i~nf~~~~~~~i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~ 49 (202)
T PF13476_consen 1 KIHIKNFRSFKDLEIDFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR 49 (202)
T ss_dssp EEEEEEETTEEEEEEE--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred CEEEEEeCCCcceEEEcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 6899999999999999999999999999999999999999999998754
No 59
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.47 E-value=1.6e-13 Score=133.95 Aligned_cols=90 Identities=24% Similarity=0.307 Sum_probs=72.7
Q ss_pred eeEEEEEEEecccc-cCceeeeCCC----eEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEE
Q 001536 20 GTITRVRLENFMCH-SSLQIELGEW----VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEV 94 (1058)
Q Consensus 20 m~i~~l~l~nf~~~-~~~~i~f~~~----~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~ 94 (1058)
|+|.+|++.||++| +...|+|.++ +++|+||||||||||++||.|+|+|.+....+.....+.+..+...+.|.+
T Consensus 1 m~~~~i~l~nf~~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred CEEEEEEEECCcCcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 88999999999998 5678899765 999999999999999999999998877643333234567777778889999
Q ss_pred EEEeCCCCccCcccCCCeEEEEEEE
Q 001536 95 ELKNRGEDAFKPEIFGDSIIIERRI 119 (1058)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~ 119 (1058)
.|.+.+ ..+.+.|.+
T Consensus 81 ~f~~~~----------~~~~~~r~~ 95 (213)
T cd03279 81 TFQLGG----------KKYRVERSR 95 (213)
T ss_pred EEEECC----------eEEEEEEec
Confidence 998762 356777754
No 60
>PRK03918 chromosome segregation protein; Provisional
Probab=99.44 E-value=2.8e-06 Score=104.15 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=70.2
Q ss_pred ceeEEEEecCCCCCCCcccCCccCCCCchhHHHHHHHHHhhhh--cCCCeeeechhhhccChhhHHHHHHHHHHHHhcCC
Q 001536 951 KTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM--TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQG 1028 (1058)
Q Consensus 951 ~~l~i~v~~~~~~~~~~~~~~~~lSgGE~~~~~la~~~al~~~--~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~ 1028 (1058)
..+.+.+.. ++...++..||||++.+++||+++|++.. .++|++||||||++||+.++..++..|..+. ..+
T Consensus 771 ~~~~i~~l~-----~g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~-~~~ 844 (880)
T PRK03918 771 NKVKLFVVY-----QGKERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYL-RKI 844 (880)
T ss_pred CceEEEEeC-----CCCcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHH-hcC
Confidence 345555442 33344678899999999999998877653 6788999999999999999988888888775 346
Q ss_pred cEEEEEccCCCCCCCCCCCee
Q 001536 1029 SQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 1029 ~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.|||+|||+.. +..+.+.+.
T Consensus 845 ~~iiiith~~~-~~~~~d~~~ 864 (880)
T PRK03918 845 PQVIIVSHDEE-LKDAADYVI 864 (880)
T ss_pred CEEEEEECCHH-HHHhCCeEE
Confidence 89999999985 445555543
No 61
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.43 E-value=6.5e-13 Score=127.74 Aligned_cols=90 Identities=27% Similarity=0.381 Sum_probs=72.5
Q ss_pred EEEEEEEecccc-cCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCC-CccchhhhhhcCCceeEEEEEEEeC
Q 001536 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQ-RAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 22 i~~l~l~nf~~~-~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~-r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|++|++.||++| +..+++|++|+++|+||||||||||++||.|+++|...... +.....+.+..+...+.|.+.|.+.
T Consensus 1 ~~~l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 1 IDKLSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred CcEEEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 578999999995 66789999999999999999999999999999987765322 1112456778888889999999876
Q ss_pred CCCccCcccCCCeEEEEEEEe
Q 001536 100 GEDAFKPEIFGDSIIIERRIT 120 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~ 120 (1058)
. ++.|++.|.+.
T Consensus 81 ~---------~~~~~v~r~~~ 92 (204)
T cd03240 81 N---------GKKYTITRSLA 92 (204)
T ss_pred C---------CCEEEEEEEhh
Confidence 2 35688888664
No 62
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.28 E-value=9e-12 Score=118.93 Aligned_cols=78 Identities=27% Similarity=0.449 Sum_probs=61.3
Q ss_pred EEEEEEEecccc-cCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCc------eeEEEE
Q 001536 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (1058)
Q Consensus 22 i~~l~l~nf~~~-~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~------~~~v~~ 94 (1058)
|++|.+.||++| .+..++|.+|+++|+|||||||||+++||.|+++.......|+....+++..|.. ...|.+
T Consensus 1 ~~~~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (197)
T cd03278 1 LKKLELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL 80 (197)
T ss_pred CcEEEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEE
Confidence 568999999999 7889999999999999999999999999999987554333455555666655543 356677
Q ss_pred EEEeC
Q 001536 95 ELKNR 99 (1058)
Q Consensus 95 ~~~~~ 99 (1058)
.|.+.
T Consensus 81 vfq~~ 85 (197)
T cd03278 81 TFDNS 85 (197)
T ss_pred EEEcC
Confidence 77654
No 63
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.22 E-value=2.7e-11 Score=117.09 Aligned_cols=78 Identities=33% Similarity=0.497 Sum_probs=59.8
Q ss_pred eeEEEEEEEecccccCcee--eeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCC-----ceeEE
Q 001536 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC-----SYAMV 92 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i--~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~-----~~~~v 92 (1058)
|.|++|++.||++|++..+ +++..++.|+|||||||||+|++|.|++|..... .|...+..++..+. ..+.+
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 79 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASK-MRQKKLSDLIHNSAGHPNLDSCSV 79 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHHH-hhhhhHHHHhcCCCCCCCCceEEE
Confidence 7899999999999977655 6777899999999999999999999998865432 34444555555443 34577
Q ss_pred EEEEEe
Q 001536 93 EVELKN 98 (1058)
Q Consensus 93 ~~~~~~ 98 (1058)
...|..
T Consensus 80 ~~~~~~ 85 (212)
T cd03274 80 EVHFQE 85 (212)
T ss_pred EEEEEe
Confidence 777764
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.21 E-value=5.3e-05 Score=93.32 Aligned_cols=52 Identities=27% Similarity=0.372 Sum_probs=48.4
Q ss_pred CeeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCc
Q 001536 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (1058)
Q Consensus 19 ~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~ 70 (1058)
.++|++|.+.||++|.+.+|+|++|+++|+|+|||||||+|+||+++|++..
T Consensus 4 ~~ki~~l~l~N~~~~~~~~~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~ 55 (1486)
T PRK04863 4 RGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDL 55 (1486)
T ss_pred CceeeEEEEecccCccceEEEecCCeEEEECCCCCCHHHHHHHHHccccCCC
Confidence 4789999999999999999999999999999999999999999999986544
No 65
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.18 E-value=8e-05 Score=92.56 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=33.8
Q ss_pred eeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCcc
Q 001536 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA 77 (1058)
Q Consensus 37 ~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~ 77 (1058)
+|.++ |.|-|+|-||+||||||.+|.+.+|..|++.....
T Consensus 13 El~lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~k~ 52 (1201)
T PF12128_consen 13 ELKLD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRLVPKT 52 (1201)
T ss_pred EEecC-CceeeecCCCCcHHHHHHHHHHhcCCCccccCCcc
Confidence 66777 67889999999999999999999999888755443
No 66
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=0.00014 Score=91.84 Aligned_cols=72 Identities=22% Similarity=0.228 Sum_probs=58.9
Q ss_pred ccCCccCCCCchhHHHHHHHHHhhh--hcCCCeeeechhhhccChhhHHHHHHHHHHHHh----cCCcEEEEEccCCC
Q 001536 968 VRDTRGLSGGERSFSTLCFALALHE--MTEAPFRAMDEFDVFMDAISRKISLDTLVDFAL----AQGSQWIFITPHDV 1039 (1058)
Q Consensus 968 ~~~~~~lSgGE~~~~~la~~~al~~--~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~----~~~~Q~i~iT~~~~ 1039 (1058)
+...+.||||++.+++|.+++||+. +..+++++||||+++||+.+...+...|..+.. ..+.+||||||...
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~ 1271 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED 1271 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH
Confidence 3345689999999988888887776 457889999999999999999888888877642 24789999999974
No 67
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=99.10 E-value=2.9e-09 Score=109.24 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=58.9
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhc------CCceeEEE
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT------GCSYAMVE 93 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~------~~~~~~v~ 93 (1058)
|+|.+|.|.||+++....|+|++ .|+++|+|++||||+++||.++|+.... .+.-...||-.. ....-.|.
T Consensus 1 M~l~~i~i~~FRgi~~~~~~l~~-~t~liG~N~~GKss~l~Al~~~l~~~~~--~~~f~~~DFh~~~~~~~~~~~~i~i~ 77 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSLPLDD-NTVLIGENNWGKSSLLDALSLLLSPSRR--LYQFTESDFHVPPGEEHDQERHIQIV 77 (373)
T ss_pred CeEEEEEEeccCccceEEEEecC-ceEEEcCCCccHhHHHHHHHHHhCCCcc--ccccCHHHhCCCcccccccCceEEEE
Confidence 89999999999999999999996 8999999999999999999999998754 222333454321 12234566
Q ss_pred EEEEeC
Q 001536 94 VELKNR 99 (1058)
Q Consensus 94 ~~~~~~ 99 (1058)
++|...
T Consensus 78 ~~F~e~ 83 (373)
T PF11398_consen 78 LTFCES 83 (373)
T ss_pred EEecCC
Confidence 666543
No 68
>PF13166 AAA_13: AAA domain
Probab=99.09 E-value=1.8e-07 Score=111.28 Aligned_cols=68 Identities=19% Similarity=0.086 Sum_probs=57.9
Q ss_pred CccCCCCchhHHHHHHHHHhhh--h---cCCCeeeechhhhccChhhHHHHHHHHHHHHh-cCCcEEEEEccCC
Q 001536 971 TRGLSGGERSFSTLCFALALHE--M---TEAPFRAMDEFDVFMDAISRKISLDTLVDFAL-AQGSQWIFITPHD 1038 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~--~---~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~-~~~~Q~i~iT~~~ 1038 (1058)
...||.|||..+|+||-||... . ...+++|||||=..||..++..++.+|.+.+. ....||||+||+-
T Consensus 498 ~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~ 571 (712)
T PF13166_consen 498 AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNL 571 (712)
T ss_pred cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcH
Confidence 4779999999999999888665 1 24578889999999999999999999998842 3789999999975
No 69
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.07 E-value=4e-10 Score=107.77 Aligned_cols=89 Identities=54% Similarity=0.884 Sum_probs=75.1
Q ss_pred cCCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhc-CCcEEEEEccCCCCCCCCCCC
Q 001536 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALA-QGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 969 ~~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~-~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
..+..||||+|.+++|+..++++.+..+++++||||+++||..++..+.+.|.++... .+.++|+||.|.+..+...++
T Consensus 105 ~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~ 184 (198)
T cd03276 105 RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDD 184 (198)
T ss_pred CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccc
Confidence 3577899999999999999999989999999999999999999999989988887532 256777777666556655689
Q ss_pred eeEEecCCCC
Q 001536 1048 IKKQQMAAPR 1057 (1058)
Q Consensus 1048 ~~v~~~~~~~ 1057 (1058)
|.|.|+.+||
T Consensus 185 v~~~~~~~~~ 194 (198)
T cd03276 185 VKVFRMKDPR 194 (198)
T ss_pred eeEEEecCCC
Confidence 9999999997
No 70
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.01 E-value=0.00028 Score=85.64 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 001536 846 GSTPEQLSAQVNRLNQRLK 864 (1058)
Q Consensus 846 ~~~~~~l~~~l~~l~~~~~ 864 (1058)
...+..+...+..+...+.
T Consensus 1306 ~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1306 KNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444
No 71
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=99.01 E-value=1.5e-10 Score=111.36 Aligned_cols=50 Identities=36% Similarity=0.593 Sum_probs=47.1
Q ss_pred eeEEEEEEEecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHHhcCC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCR 69 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~lg~~ 69 (1058)
|+|.+|.|.||+||....|.|+++ .|+|+||||+||||+||||..||...
T Consensus 1 mrLrkiSl~nfr~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~f 51 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKF 51 (440)
T ss_pred CccchhhhhhhhhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhh
Confidence 789999999999999999999998 99999999999999999999998643
No 72
>PRK01156 chromosome segregation protein; Provisional
Probab=98.98 E-value=0.0004 Score=84.96 Aligned_cols=86 Identities=22% Similarity=0.253 Sum_probs=65.8
Q ss_pred ccCCccCCCCchhHHHHHHHHHhhhh--cCCCeeeechhhhccChhhHHHHHHHHHHHHhc-CC-cEEEEEccCCCCCCC
Q 001536 968 VRDTRGLSGGERSFSTLCFALALHEM--TEAPFRAMDEFDVFMDAISRKISLDTLVDFALA-QG-SQWIFITPHDVGLVK 1043 (1058)
Q Consensus 968 ~~~~~~lSgGE~~~~~la~~~al~~~--~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~-~~-~Q~i~iT~~~~~~~~ 1043 (1058)
..++..||||++.+++||++||++.+ .++|+++||||+++||+.++..++..|...... .+ +|+|||||+......
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~ 875 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence 34677899999999999999998765 578899999999999999888877777654432 22 699999999853333
Q ss_pred CCCCeeEEec
Q 001536 1044 QGERIKKQQM 1053 (1058)
Q Consensus 1044 ~~~~~~v~~~ 1053 (1058)
++..+.|.+-
T Consensus 876 ~d~ii~~~~~ 885 (895)
T PRK01156 876 ADVAYEVKKS 885 (895)
T ss_pred cCeEEEEEec
Confidence 3334666554
No 73
>COG5293 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=2.1e-05 Score=78.85 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=39.4
Q ss_pred eeEEEEEEEecc-cccCceeeeCCCeEEEEc-----------CCCCcHHHHHHHHHHHhcCCccC
Q 001536 20 GTITRVRLENFM-CHSSLQIELGEWVNFITG-----------QNGSGKSAILTALCIAFGCRAKG 72 (1058)
Q Consensus 20 m~i~~l~l~nf~-~~~~~~i~f~~~~~~I~G-----------~NgsGKStil~ai~~~lg~~~~~ 72 (1058)
|++.+.-..|-. .| .++.|.||+|+|.| .||-||||++..|.||||+.-.+
T Consensus 4 mi~~~~~~cN~q~vf--k~vkFnpGlNIVlae~red~~~~~~tnglGKSTlie~i~Fclg~ti~r 66 (591)
T COG5293 4 MIKLSKLYCNHQQVF--KPVKFNPGLNIVLAEIREDENRKKDTNGLGKSTLIELIDFCLGSTIDR 66 (591)
T ss_pred eeeehheeecccccc--ceeeeCCCceEEeeeccCcccccccccCcchhhHHHHHHHHhcccccc
Confidence 555555555511 12 25789999999998 59999999999999999998763
No 74
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.87 E-value=8.2e-09 Score=99.85 Aligned_cols=87 Identities=34% Similarity=0.479 Sum_probs=72.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhc-CCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALA-QGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~-~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||+|+++.++.++|++.+.+.|++++|||+++||+.++..+...|.++.+. ...+||++||+........+.+
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCce
Confidence 467899999999999999998888999999999999999999999999999887633 2368999999976566666667
Q ss_pred eEEecCCC
Q 001536 1049 KKQQMAAP 1056 (1058)
Q Consensus 1049 ~v~~~~~~ 1056 (1058)
.|+-+.+.
T Consensus 203 ~v~~l~~g 210 (213)
T cd03277 203 TVLCVYNG 210 (213)
T ss_pred EEEEEecC
Confidence 77766554
No 75
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.87 E-value=4.4e-06 Score=82.25 Aligned_cols=137 Identities=16% Similarity=0.268 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 674 QHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVED 753 (1058)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 753 (1058)
..+..........+.++..+...+..+...+.. ....+......+..+..........+..+..........+..
T Consensus 22 ~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~-----~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~ 96 (237)
T PF00261_consen 22 EKLKEAEKRAEKAEAEVASLQRRIQLLEEELER-----AEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEE 96 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333334444444444444555555555444 455555566666666666666666666666555555555555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001536 754 LKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYR 816 (1058)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1058)
++..+.............+......+..+...+..+...+..++..+ ..++..+..+...+.
T Consensus 97 lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki-~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 97 LEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKI-KELEEELKSVGNNLK 158 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHHHHHHHHHHHHH
Confidence 55555555555454444554444444444444444444444444444 333333333333333
No 76
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.86 E-value=0.0005 Score=78.28 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 376 SEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIREL 441 (1058)
Q Consensus 376 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l 441 (1058)
..++..+..++.++..+.............+...+.........+...+..+..++..-..++..+
T Consensus 241 ~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~ 306 (775)
T PF10174_consen 241 ASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEAL 306 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433333333334433444433333334444444444444444444333
No 77
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.84 E-value=5e-10 Score=130.88 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 636 SYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQN 678 (1058)
Q Consensus 636 ~l~~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 678 (1058)
.++.+|.++...+.........+...+..+...+..++..+..
T Consensus 550 KLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee 592 (859)
T PF01576_consen 550 KLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEE 592 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3444455555444444444444444444444444444443333
No 78
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.84 E-value=3.8e-09 Score=97.86 Aligned_cols=68 Identities=40% Similarity=0.580 Sum_probs=51.2
Q ss_pred EEEEecccc-cCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHHhcCCccCCCCccchhhhhhcCCceeEEEEEE
Q 001536 25 VRLENFMCH-SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (1058)
Q Consensus 25 l~l~nf~~~-~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~ 96 (1058)
|.+.||++| .+..|+|.++ +++|+|||||||||++++|.|+++.......|. +.+..|...+.++++|
T Consensus 2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~ 71 (162)
T cd03227 2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR----SGVKAGCIVAAVSAEL 71 (162)
T ss_pred ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc----CcccCCCcceeeEEEE
Confidence 677899997 6778887655 999999999999999999999998877655552 2234455455555444
No 79
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.78 E-value=7.4e-09 Score=98.99 Aligned_cols=86 Identities=22% Similarity=0.335 Sum_probs=68.8
Q ss_pred cCCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 969 ~~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
..+..||||||++++|+..+++....+.++++||||+++||+.+...+...|.++. .+.+||++||+...+..++..+
T Consensus 109 ~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~tiIiitH~~~~~~~~d~v~ 186 (197)
T cd03278 109 QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS--KETQFIVITHRKGTMEAADRLY 186 (197)
T ss_pred cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--cCCEEEEEECCHHHHhhcceEE
Confidence 34678999999999999988865556778999999999999999988888888876 5789999999985443334347
Q ss_pred eEEecCCC
Q 001536 1049 KKQQMAAP 1056 (1058)
Q Consensus 1049 ~v~~~~~~ 1056 (1058)
.|++....
T Consensus 187 ~~~~~~~~ 194 (197)
T cd03278 187 GVTMQESG 194 (197)
T ss_pred EEEeccCC
Confidence 77776543
No 80
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.75 E-value=3.8e-05 Score=75.68 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001536 194 LLQSIYNHLNKGDALVLELEATIKPTEKELSELQ 227 (1058)
Q Consensus 194 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~ 227 (1058)
.+..+...+..+...+.........++.++..+.
T Consensus 9 eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~ 42 (237)
T PF00261_consen 9 ELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQ 42 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 81
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.74 E-value=1.7e-08 Score=94.43 Aligned_cols=78 Identities=33% Similarity=0.485 Sum_probs=65.2
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeEEe
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1052 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1052 (1058)
|||||+.+++|+..++.+.+.+.+++++|||+.+||..++..+.+.|.++. ..+.++|++||....+..++..+.|.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~-~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA-KHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 899999999999999888788889999999999999999998888888876 346899999999854433333467666
No 82
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.73 E-value=1.4e-08 Score=88.71 Aligned_cols=73 Identities=23% Similarity=0.285 Sum_probs=60.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..||||||+++|||=-| +.+.|++.+||||++||+.=|..+..++.++....+.-++++||++.......++
T Consensus 127 P~~LSGGqRQRvALARcl----vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~ 199 (231)
T COG3840 127 PGELSGGQRQRVALARCL----VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADR 199 (231)
T ss_pred ccccCchHHHHHHHHHHH----hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhc
Confidence 567999999999987443 5788999999999999999998888888888767889999999998654444433
No 83
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=98.73 E-value=1.5e-08 Score=89.92 Aligned_cols=50 Identities=28% Similarity=0.405 Sum_probs=45.4
Q ss_pred CCeeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 001536 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFG 67 (1058)
Q Consensus 18 ~~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg 67 (1058)
.++++.+|.|.||.+|-..+++|+.-+|.+.|.|||||||+|.|+..+|-
T Consensus 3 ~r~k~~SLtlVNwNG~fartfdLd~lvTtL~G~NGAGKsT~m~Af~taLI 52 (227)
T PF04310_consen 3 ERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITALI 52 (227)
T ss_dssp -B-EEEEEEEECETTECEEEEEHHCCCCCCCCSTTCCHHHHHHHHHHHHS
T ss_pred cccccceEEEEeecCeeeeEeehhhheEeeecCCCCcchhhHHHHHHHhc
Confidence 35899999999999999999999999999999999999999999998873
No 84
>PF13166 AAA_13: AAA domain
Probab=98.66 E-value=0.00034 Score=83.52 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=33.2
Q ss_pred eccccc--CceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCc
Q 001536 29 NFMCHS--SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (1058)
Q Consensus 29 nf~~~~--~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~ 70 (1058)
||++|+ +..+++.+++|+|+|.|||||||+-..|.-+-++.+
T Consensus 1 n~~~~~~~~~~~~~~~~~n~IYG~NGsGKStlsr~l~~~~~~~~ 44 (712)
T PF13166_consen 1 NYASFDNWDNELDEFKKINLIYGRNGSGKSTLSRILKSLCRGRG 44 (712)
T ss_pred CeeeecCCCccCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 678885 456766668999999999999999999986544433
No 85
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.65 E-value=5.5e-08 Score=93.77 Aligned_cols=83 Identities=20% Similarity=0.182 Sum_probs=63.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhh--hcCCCeeeechhhhccChhhHH-HHHHHHHHHHhcCCcEEEEEccCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHE--MTEAPFRAMDEFDVFMDAISRK-ISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1046 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~--~~~~p~~v~DE~~~~lD~~~~~-~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1046 (1058)
.+..|||||+.+++||+.+|+.. +.+.|+++||||+++||+..+. .+.+.|.++....+.++|++||+......++.
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~ 191 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADH 191 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCE
Confidence 46789999999999988777655 4677899999999999999888 88888888752227899999999753333332
Q ss_pred CeeEEe
Q 001536 1047 RIKKQQ 1052 (1058)
Q Consensus 1047 ~~~v~~ 1052 (1058)
.+.+.+
T Consensus 192 i~~l~~ 197 (204)
T cd03240 192 IYRVEK 197 (204)
T ss_pred EEEEee
Confidence 244433
No 86
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=3.1e-08 Score=95.83 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=63.1
Q ss_pred cCCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 969 ~~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.++..||||||+++|||-.+|+. .-++|||||+++||+.+++.++..|.++....+.-+|++||+-.....+.+.+
T Consensus 134 r~p~~LSGGqkqRvaIA~vLa~~----P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v 209 (235)
T COG1122 134 RPPFNLSGGQKQRVAIAGVLAMG----PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRV 209 (235)
T ss_pred CCccccCCcceeeHHhhHHHHcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEE
Confidence 35778999999999999988865 55888999999999999999999999987434567999999875555555554
Q ss_pred eE
Q 001536 1049 KK 1050 (1058)
Q Consensus 1049 ~v 1050 (1058)
-|
T Consensus 210 ~v 211 (235)
T COG1122 210 VV 211 (235)
T ss_pred EE
Confidence 33
No 87
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.64 E-value=3.6e-08 Score=92.94 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=57.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
.+..||||||+++|||=.++ ...++++.|||+++||+.+...++++|.++.+..+.=+|++||.+....
T Consensus 139 ~p~eLSGGqqQRVAIARAL~----~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 139 KPSELSGGQQQRVAIARALI----NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred CchhcCHHHHHHHHHHHHHh----cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 36679999999999997665 3445666899999999999999999999987666889999999985333
No 88
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.63 E-value=0.0023 Score=72.69 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 849 PEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLT 928 (1058)
Q Consensus 849 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 928 (1058)
...+...+..+...+.. ..-....+...|+.+...+..+..+..++......+...+.. ...|...+..+...|.
T Consensus 450 ~~~~~~~i~~l~~~L~~----g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-~nRfr~~~~~V~~~f~ 524 (569)
T PRK04778 450 FFEVSDEIEALAEELEE----KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-ANRYRSDNEEVAEALN 524 (569)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCHHHHHHHH
Confidence 34555566666665544 122334444466666666666666655555555555444443 3355555666666665
Q ss_pred HHH
Q 001536 929 WQF 931 (1058)
Q Consensus 929 ~~f 931 (1058)
..-
T Consensus 525 ~Ae 527 (569)
T PRK04778 525 EAE 527 (569)
T ss_pred HHH
Confidence 443
No 89
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.63 E-value=5.7e-09 Score=122.20 Aligned_cols=64 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVK 701 (1058)
Q Consensus 638 ~~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 701 (1058)
...+.+++..+.......+.+...+..++..+..+..++..+...+.........++..+..+.
T Consensus 580 q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~ 643 (859)
T PF01576_consen 580 QAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQ 643 (859)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433333333333333333
No 90
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.61 E-value=3.5e-08 Score=98.97 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=68.0
Q ss_pred CcccCCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCC
Q 001536 966 SNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1045 (1058)
Q Consensus 966 ~~~~~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1045 (1058)
.....+..||||++.+++|+..++...+.+.++++||||+++||...+..+.+.|.++. ..+.+||+|||+.. .....
T Consensus 148 ~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~-~~g~~vi~isH~~~-~~~~~ 225 (247)
T cd03275 148 KRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQA-GPNFQFIVISLKEE-FFSKA 225 (247)
T ss_pred hhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhc-cCCcEEEEEECCHH-HHhhC
Confidence 33445678999999999999999976667788999999999999999988888888875 34889999999964 44445
Q ss_pred CC-eeEEe
Q 001536 1046 ER-IKKQQ 1052 (1058)
Q Consensus 1046 ~~-~~v~~ 1052 (1058)
+. +.++|
T Consensus 226 d~i~~~~~ 233 (247)
T cd03275 226 DALVGVYR 233 (247)
T ss_pred CeEEEEEe
Confidence 54 45544
No 91
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.58 E-value=8.1e-08 Score=92.08 Aligned_cols=74 Identities=23% Similarity=0.219 Sum_probs=61.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||++++.||-.|| ....+++|||||+|+|+..+..++.+|.++-+ .+.=||++||.......+.+.+
T Consensus 136 ~i~~LSGGQ~QRV~lARAL~----~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-eg~tIl~vtHDL~~v~~~~D~v 209 (254)
T COG1121 136 QIGELSGGQKQRVLLARALA----QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-EGKTVLMVTHDLGLVMAYFDRV 209 (254)
T ss_pred cccccCcHHHHHHHHHHHhc----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCcHHhHhhCCEE
Confidence 57889999999999887665 56678899999999999999888888888764 4899999999886566666553
No 92
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.56 E-value=5.4e-08 Score=104.81 Aligned_cols=50 Identities=34% Similarity=0.523 Sum_probs=48.6
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCR 69 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~ 69 (1058)
|+|.+|+|.||++|...++.|+.|+|+|+|+|.+|||||||||+.+|...
T Consensus 1 M~L~~v~I~nFR~i~~lsl~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~ 50 (581)
T COG3593 1 MHLERVKIKNFRGINRLSLEFEEGLNVLIGENNSGKSSLLDALRLLLDPE 50 (581)
T ss_pred CcceeEEecccceeeeeeeeecCCceEEEcCCCcchHHHHHHHHHHcCCc
Confidence 89999999999999999999999999999999999999999999999875
No 93
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.55 E-value=0.0012 Score=70.70 Aligned_cols=54 Identities=7% Similarity=0.183 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRM 691 (1058)
Q Consensus 638 ~~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1058)
..++.....+..++......++.+...++.++..++..+...+.....+.....
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443333333333333
No 94
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.54 E-value=3.3e-08 Score=94.72 Aligned_cols=45 Identities=33% Similarity=0.557 Sum_probs=41.2
Q ss_pred eeEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHH
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA 65 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~ 65 (1058)
|+|.+|.+.||++|....+++. ++|+|+|.||+||||+++|+.++
T Consensus 1 ~~l~si~vknyRs~r~l~lei~-~~nviIGANGaGKSn~~~~l~~l 45 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDLEIR-RVNVIIGANGAGKSNFYDALRLL 45 (373)
T ss_pred CccchhhhhcchhHHhcccccc-ceEEEEcCCCCchhHHHHHHHHH
Confidence 6799999999999999888877 69999999999999999998753
No 95
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.54 E-value=5.5e-08 Score=99.08 Aligned_cols=49 Identities=37% Similarity=0.607 Sum_probs=42.6
Q ss_pred eEEEEEEEecccccCceee-eCCCeEEEEcCCCCcHHHHHHHHHHHhcCCc
Q 001536 21 TITRVRLENFMCHSSLQIE-LGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (1058)
Q Consensus 21 ~i~~l~l~nf~~~~~~~i~-f~~~~~~I~G~NgsGKStil~ai~~~lg~~~ 70 (1058)
+|++++|.||++|.+..+. |. ++|+|+|+||||||++++|+.+..+...
T Consensus 1 MI~~~~IkNFkSf~e~~~~~~~-~in~I~G~N~sGKSNlleAl~f~~~~~~ 50 (371)
T COG1106 1 MIKSFKIKNFKSFRELELEDFG-KINIIYGANGAGKSNLLEALYFLKGLIS 50 (371)
T ss_pred CceEEEecccccHHHhhhcccc-ceEEEEcCCCCchhHHHHHHHHHHHhcc
Confidence 4899999999999988875 76 5999999999999999999998765433
No 96
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.54 E-value=9.5e-08 Score=77.04 Aligned_cols=54 Identities=28% Similarity=0.222 Sum_probs=40.9
Q ss_pred ccCCccCCCCch-hHHHHHHHHHhhhh--------cCCCeeeechhhhccChhhHHHHHHHHH
Q 001536 968 VRDTRGLSGGER-SFSTLCFALALHEM--------TEAPFRAMDEFDVFMDAISRKISLDTLV 1021 (1058)
Q Consensus 968 ~~~~~~lSgGE~-~~~~la~~~al~~~--------~~~p~~v~DE~~~~lD~~~~~~~~~~l~ 1021 (1058)
..+...+||||+ ..+++++++|+... ..+.+++|||+|++||+.+...++..|.
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 456788999999 77888888876642 1245777999999999999877776664
No 97
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.54 E-value=9.4e-08 Score=92.57 Aligned_cols=83 Identities=24% Similarity=0.378 Sum_probs=67.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..||||++.+++||..+++..+.+.+++++|||+++||+..+..+.+.|.++. .+.++|++||++..+.-++..+.
T Consensus 124 ~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~~~~~~~~d~v~~ 201 (212)
T cd03274 124 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLRNNMFELADRLVG 201 (212)
T ss_pred chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECcHHHHHhCCEEEE
Confidence 4567999999999999988876567788999999999999999988888888875 67899999999754443444477
Q ss_pred EEecC
Q 001536 1050 KQQMA 1054 (1058)
Q Consensus 1050 v~~~~ 1054 (1058)
|++-|
T Consensus 202 ~~~~~ 206 (212)
T cd03274 202 IYKTN 206 (212)
T ss_pred EEecC
Confidence 77654
No 98
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.51 E-value=1.2e-07 Score=95.63 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=64.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..||||++++++||..++..-+.+.+++++|||+++||...+..+...|.++. .+.++|+|||++..+..++.-+.
T Consensus 163 ~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~~~~~~~d~v~~ 240 (251)
T cd03273 163 SLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKEGMFNNANVLFR 240 (251)
T ss_pred cccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHhCCEEEE
Confidence 3567999999999999988865566778999999999999999988888888875 68899999999754443433345
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
|
T Consensus 241 ~ 241 (251)
T cd03273 241 T 241 (251)
T ss_pred E
Confidence 4
No 99
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.49 E-value=0.0052 Score=69.75 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=7.4
Q ss_pred CCcccCCCCCCCC
Q 001536 2 GDYRFSSESGYGP 14 (1058)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (1058)
|||||+|.++-.+
T Consensus 896 GdP~lg~g~~CrP 908 (1758)
T KOG0994|consen 896 GDPRLGSGIGCRP 908 (1758)
T ss_pred CCcccCCCCCCCC
Confidence 5666666554444
No 100
>PF13175 AAA_15: AAA ATPase domain
Probab=98.49 E-value=1.2e-07 Score=105.68 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=58.5
Q ss_pred ccCCccCCCCchhHHHHHHHHHhhhh--cCCC----eeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 968 VRDTRGLSGGERSFSTLCFALALHEM--TEAP----FRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 968 ~~~~~~lSgGE~~~~~la~~~al~~~--~~~p----~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
..++..+|.|++.++.++++++.... ...+ +++||||.++|-+...+.+++.|.+++...+.|||+-||-|.
T Consensus 336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 34778899999988888887765432 2223 888999999999999999999999998434899999999873
No 101
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1.4e-07 Score=92.97 Aligned_cols=74 Identities=27% Similarity=0.299 Sum_probs=59.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 128 ~~~LSgG~~qrl~la~al~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 201 (213)
T cd03259 128 PHELSGGQQQRVALARALA----REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRI 201 (213)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEE
Confidence 4569999999999988776 3678999999999999999999999998876334788999999875344444443
No 102
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.48 E-value=1.3e-07 Score=83.13 Aligned_cols=39 Identities=41% Similarity=0.714 Sum_probs=34.1
Q ss_pred eeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcCCccCCCC
Q 001536 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQR 75 (1058)
Q Consensus 37 ~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r 75 (1058)
.++|.+.+|+|+|.||+|||||++||...+|..+...++
T Consensus 32 ~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~ 70 (233)
T COG3910 32 RLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGK 70 (233)
T ss_pred hccccCceEEEEcCCCccHHHHHHHHHhhccccccCCCc
Confidence 578999999999999999999999999998877765443
No 103
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.47 E-value=2.4e-07 Score=89.50 Aligned_cols=85 Identities=25% Similarity=0.297 Sum_probs=69.7
Q ss_pred cCCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 969 ~~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+.+..||||||+++.||-.|| ..+|++++|||+++||..|--.++++|.++.+..+.=+|+++|......++.+++
T Consensus 134 r~~~~LSGGerQrv~iArALa----Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 134 RPVDELSGGERQRVLIARALA----QETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred CcccccChhHHHHHHHHHHHh----cCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 357889999999999987776 5788999999999999999999999999998667888999999886567777764
Q ss_pred ------eEEecCCCC
Q 001536 1049 ------KKQQMAAPR 1057 (1058)
Q Consensus 1049 ------~v~~~~~~~ 1057 (1058)
+|+....|+
T Consensus 210 i~lk~G~i~a~G~p~ 224 (258)
T COG1120 210 ILLKDGKIVAQGTPE 224 (258)
T ss_pred EEEECCeEEeecCcc
Confidence 445555554
No 104
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.46 E-value=0.0062 Score=69.16 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001536 850 EQLSAQVNRLNQRLK 864 (1058)
Q Consensus 850 ~~l~~~l~~l~~~~~ 864 (1058)
+....+|..|++++.
T Consensus 1727 ~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1727 EDKAAELAGLEKRVE 1741 (1758)
T ss_pred HHHHHHhhhHHHHHH
Confidence 333344444444433
No 105
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=2e-07 Score=92.28 Aligned_cols=73 Identities=27% Similarity=0.290 Sum_probs=58.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..|+. ..+++++|||+++||..++..+.+.|.++....+.-||++||+........+.
T Consensus 129 ~~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 129 PHQLSGGMRQRVALARALAV----DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 35689999999999887764 56899999999999999999999999887533477899999998534444444
No 106
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.45 E-value=3.2e-07 Score=83.46 Aligned_cols=63 Identities=27% Similarity=0.317 Sum_probs=55.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1038 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1038 (1058)
+..||||+++++|||=.||+ ......||||+++||++-..-+.+.|.+++ ..+.-.||+||.=
T Consensus 134 P~qLSGGQqQRVAIARALaM----~P~vmLFDEPTSALDPElv~EVL~vm~~LA-~eGmTMivVTHEM 196 (240)
T COG1126 134 PAQLSGGQQQRVAIARALAM----DPKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMTMIIVTHEM 196 (240)
T ss_pred ccccCcHHHHHHHHHHHHcC----CCCEEeecCCcccCCHHHHHHHHHHHHHHH-HcCCeEEEEechh
Confidence 56799999999999987774 355667999999999999999999999998 6789999999874
No 107
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.45 E-value=2e-07 Score=91.74 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=59.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||..|+ .+.+++++|||+++||..++..+.+.|.++.. .+.-+|++||+........+.+
T Consensus 130 ~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i 202 (213)
T cd03235 130 IGELSGGQQQRVLLARALV----QDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRV 202 (213)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEE
Confidence 4579999999999998776 47789999999999999999999999988863 5678999999975444444443
No 108
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.42 E-value=2.2e-07 Score=92.24 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=59.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||..++ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 112 ~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 185 (230)
T TIGR01184 112 PGQLSGGMKQRVAIARALS----IRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRV 185 (230)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 4569999999999988776 3678999999999999999999999998876434678999999975433434443
No 109
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.42 E-value=2.5e-07 Score=90.97 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=58.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++.. .+.-||++||+........+.+
T Consensus 132 ~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i 204 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLA----MDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVTHDLDLLLELADRV 204 (211)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 4578999999999988776 36689999999999999999999999988763 4788999999875444434443
No 110
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=2.5e-07 Score=85.70 Aligned_cols=69 Identities=30% Similarity=0.323 Sum_probs=56.6
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
|||||+.+++|+..++.. .|++++|||+.+||..++..+...|.++.. .+.++|++||+........+.
T Consensus 81 lS~G~~~r~~l~~~l~~~----~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~ 149 (157)
T cd00267 81 LSGGQRQRVALARALLLN----PDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHDPELAELAADR 149 (157)
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 999999999999888854 789999999999999999888888888762 368999999997543443333
No 111
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.41 E-value=3e-07 Score=86.75 Aligned_cols=73 Identities=26% Similarity=0.235 Sum_probs=60.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
++.||||.|+++|||=.++ ....+++|||||++||.-.|..+-+.|.+++...+.-+++|||.-...+-.+++
T Consensus 128 P~qLSGGMrQRVaiARAL~----~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdR 200 (248)
T COG1116 128 PHQLSGGMRQRVAIARALA----TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADR 200 (248)
T ss_pred ccccChHHHHHHHHHHHHh----cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCE
Confidence 5789999999999997666 345677899999999999999999999999977789999999986443333333
No 112
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=3.2e-07 Score=92.60 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=59.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........+.+
T Consensus 142 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v 215 (241)
T cd03256 142 ADQLSGGQQQRVAIARALM----QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRI 215 (241)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4679999999999998777 3668999999999999999999999998876434788999999975444344443
No 113
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.41 E-value=2.6e-07 Score=92.10 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=59.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..|+ ...++++||||+++||..++..+...|.++....+.-||++||+........+.+
T Consensus 112 ~~~~LSgGe~qrv~iaraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i 186 (246)
T cd03237 112 EVPELSGGELQRVAIAACLS----KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL 186 (246)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999998776 4678999999999999999999999998886444788999999975333344443
No 114
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.40 E-value=2.9e-07 Score=92.47 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=58.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..||||||++++||..|+ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........++
T Consensus 131 ~~~LSgGqkqrl~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~ 203 (257)
T PRK11247 131 PAALSGGQKQRVALARALI----HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADR 203 (257)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 4579999999999998776 367899999999999999999988988887644578899999997533333343
No 115
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.40 E-value=2.8e-07 Score=90.98 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=58.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||-.|+ .+.+++++|||+++||..++..+.+.|.++. ..+.-||++||+........+.
T Consensus 136 ~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~vsH~~~~~~~~~d~ 207 (216)
T TIGR00960 136 PMQLSGGEQQRVAIARAIV----HKPPLLLADEPTGNLDPELSRDIMRLFEEFN-RRGTTVLVATHDINLVETYRHR 207 (216)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 3569999999999998776 3678999999999999999999999888875 3477899999997544444444
No 116
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.39 E-value=3.8e-07 Score=89.62 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=59.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++....+..+|++||+........+.+
T Consensus 126 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v 199 (213)
T TIGR01277 126 PEQLSGGQRQRVALARCLV----RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQI 199 (213)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeE
Confidence 3468999999999998876 3568999999999999999999999999886334789999999975333344443
No 117
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.39 E-value=4.1e-07 Score=86.37 Aligned_cols=74 Identities=27% Similarity=0.293 Sum_probs=58.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++. +.+++++|||+.+||..++..+...|.++....+..+|++||+........+++
T Consensus 95 ~~~LS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~ 168 (180)
T cd03214 95 FNELSGGERQRVLLARALAQ----EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRV 168 (180)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 56799999999998877763 678999999999999999999888888876222789999999975433444443
No 118
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.39 E-value=5.5e-07 Score=84.00 Aligned_cols=66 Identities=24% Similarity=0.351 Sum_probs=56.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
.++.|||||++++|||=.++ ....++|+||++++||..+-..+.++|.++-+..+.=||||||+-.
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~----~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~ 203 (252)
T COG1124 138 RPHELSGGQRQRIAIARALI----PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA 203 (252)
T ss_pred CchhcChhHHHHHHHHHHhc----cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH
Confidence 45679999999999987665 3456888999999999999999999999987667789999999864
No 119
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.38 E-value=3.6e-07 Score=90.44 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=57.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++ .+.++++||||+++||+.++..+.+.|.++....+.-||++||+..... ..+.
T Consensus 138 ~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~ 209 (218)
T cd03255 138 PSELSGGQQQRVAIARALA----NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADR 209 (218)
T ss_pred hhhcCHHHHHHHHHHHHHc----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcE
Confidence 4568999999999887666 3668999999999999999999999998886324778999999975333 4443
No 120
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=3e-07 Score=92.07 Aligned_cols=73 Identities=23% Similarity=0.203 Sum_probs=58.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........++
T Consensus 134 ~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~ 206 (235)
T cd03261 134 PAELSGGMKKRVALARALA----LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADR 206 (235)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCE
Confidence 4579999999999987776 367899999999999999999999999887633467899999987533343444
No 121
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=3.2e-07 Score=92.47 Aligned_cols=73 Identities=26% Similarity=0.224 Sum_probs=58.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........++
T Consensus 126 ~~~LSgGq~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~ 198 (255)
T PRK11248 126 IWQLSGGQRQRVGIARALA----ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATE 198 (255)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4568999999999998776 367899999999999999999999999887533478899999987543344443
No 122
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.38 E-value=4.6e-07 Score=87.18 Aligned_cols=64 Identities=27% Similarity=0.249 Sum_probs=54.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++. ..+.-||++||+..
T Consensus 125 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~tili~sH~~~ 188 (190)
T TIGR01166 125 THCLSGGEKKRVAIAGAVA----MRPDVLLLDEPTAGLDPAGREQMLAILRRLR-AEGMTVVISTHDVD 188 (190)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HcCCEEEEEeeccc
Confidence 4569999999999987776 3668999999999999999999999998875 35788999999863
No 123
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=3.6e-07 Score=90.42 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=58.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++..+.+.-||++||+........+++
T Consensus 129 ~~~LS~G~~qr~~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i 202 (220)
T cd03265 129 VKTYSGGMRRRLEIARSLV----HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202 (220)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999987776 4678999999999999999999888888876333678999999875444444443
No 124
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=4.1e-07 Score=89.40 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=59.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++....+.-+|++||+........+++
T Consensus 126 ~~~LS~G~~qrv~ia~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i 199 (211)
T cd03298 126 PGELSGGERQRVALARVLV----RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRV 199 (211)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEE
Confidence 3468999999999998876 4668999999999999999999889888876434788999999875333434443
No 125
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=3.7e-07 Score=91.59 Aligned_cols=73 Identities=27% Similarity=0.215 Sum_probs=58.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..|+. +.+++++|||+++||..++..+.+.|.++....+.-||++||+........++
T Consensus 134 ~~~LS~G~~qrl~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 206 (239)
T cd03296 134 PAQLSGGQRQRVALARALAV----EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADR 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 45689999999999887763 56899999999999999999999999888633467899999997533343444
No 126
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.38 E-value=4.7e-07 Score=89.84 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=56.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
+..|||||+++++||..++ .+.++++||||+++||..++..+.+.|.++....+.-+|++||+....
T Consensus 139 ~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 139 PSELSGGERQRVAIARALV----NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred hhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4579999999999998776 366899999999999999999999988887633467899999997533
No 127
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.37 E-value=4e-07 Score=88.90 Aligned_cols=73 Identities=26% Similarity=0.217 Sum_probs=58.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..|+. +.+++++|||+++||+..+..+.+.|.++. ..+.-+|++||+........+.+
T Consensus 124 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 124 PLSLSGGQKQRLAIAAALLS----GKDLLIFDEPTSGLDYKNMERVGELIRELA-AQGKAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred chhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCEE
Confidence 45799999999999987763 568999999999999999999889888875 35778999999875444444443
No 128
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.37 E-value=3.2e-07 Score=90.45 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=59.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..|+ .+.++++||||+++||..++..+.+.|.++. ..+.-+|++||+........+.+
T Consensus 135 ~~~LS~G~~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~tH~~~~~~~~~d~i 207 (214)
T TIGR02673 135 PEQLSGGEQQRVAIARAIV----NSPPLLLADEPTGNLDPDLSERILDLLKRLN-KRGTTVIVATHDLSLVDRVAHRV 207 (214)
T ss_pred hhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCEE
Confidence 3578999999999998776 3668999999999999999999889888875 35788999999975444444443
No 129
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=4.2e-07 Score=85.65 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=57.9
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++.. .+..+|++||+........+.+
T Consensus 96 LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th~~~~~~~~~d~i 165 (173)
T cd03230 96 LSGGMKQRLALAQALL----HDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILEEAERLCDRV 165 (173)
T ss_pred cCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhCCEE
Confidence 9999999999998877 46789999999999999999999999998863 4689999999975344344443
No 130
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.37 E-value=3.6e-07 Score=90.23 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=59.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. +.+++++|||+.+||..++..+.+.|.++. ..+..||++||+........+++
T Consensus 140 ~~~LSgG~~qrv~laral~~----~p~llllDEP~~gLD~~~~~~~~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~i 212 (224)
T cd03220 140 VKTYSSGMKARLAFAIATAL----EPDILLIDEVLAVGDAAFQEKCQRRLRELL-KQGKTVILVSHDPSSIKRLCDRA 212 (224)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCCEE
Confidence 45799999999998877763 668999999999999999999999998876 34689999999975444444544
No 131
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.37 E-value=0.0066 Score=65.26 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAE 687 (1058)
Q Consensus 639 ~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 687 (1058)
.+..+|......++.+...++.++..++..+...+.+...+......+.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433333333
No 132
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.36 E-value=5.8e-07 Score=83.71 Aligned_cols=76 Identities=28% Similarity=0.340 Sum_probs=60.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeE
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1050 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1050 (1058)
++.||||+++++.++=.+| ...|++.+||||+++|+.+|...=+.+.++-+.-+.-|+|+||.-...+...+++-|
T Consensus 133 P~eLSGGQQQRVGv~RALA----adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v 208 (309)
T COG1125 133 PHELSGGQQQRVGVARALA----ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV 208 (309)
T ss_pred chhcCcchhhHHHHHHHHh----cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence 5679999999999987776 356777899999999999998877777766546689999999986555555555433
No 133
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.36 E-value=5.6e-07 Score=83.41 Aligned_cols=70 Identities=29% Similarity=0.381 Sum_probs=59.8
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
..||||++.+++|+..++.....+.+++++|||+.++|+..+..+...|.++... ++++|++||+.....
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~ 145 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE 145 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH
Confidence 4489999999999998886656688899999999999999999988988887643 789999999985443
No 134
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.36 E-value=4.1e-07 Score=89.53 Aligned_cols=74 Identities=27% Similarity=0.217 Sum_probs=59.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||.+++||..++ .+.+++++|||+++||..++..+.+.|.++....+.-+|++||+........+.+
T Consensus 129 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 202 (214)
T cd03297 129 PAQLSGGEKQRVALARALA----AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRI 202 (214)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEE
Confidence 4579999999999987776 3668999999999999999999999998886433678999999985444444443
No 135
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.36 E-value=7.3e-07 Score=86.83 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=60.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeE
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1050 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1050 (1058)
+..|||||+.+++||..++ ...+++++|||+.+||..++..+.+.|.++. ..+.-+|++||+......+. .++
T Consensus 127 ~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~~~--~~~ 199 (204)
T PRK13538 127 VRQLSAGQQRRVALARLWL----TRAPLWILDEPFTAIDKQGVARLEALLAQHA-EQGGMVILTTHQDLPVASDK--VRK 199 (204)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCCCEEEEEecChhhhccCC--ceE
Confidence 4569999999999887766 3678899999999999999999988888875 35678999999986444444 344
Q ss_pred Eec
Q 001536 1051 QQM 1053 (1058)
Q Consensus 1051 ~~~ 1053 (1058)
+.+
T Consensus 200 ~~~ 202 (204)
T PRK13538 200 LRL 202 (204)
T ss_pred Eec
Confidence 444
No 136
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=4e-07 Score=90.99 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=57.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQ 1044 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~ 1044 (1058)
+..||||||++++||..++. +.+++++|||+++||..++..+.+.|.++....+.-||++||+......+
T Consensus 143 ~~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 143 PSELSGGERQRVAIARALVN----NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 45699999999999887763 66899999999999999999989988887533578999999997543333
No 137
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.36 E-value=3.7e-07 Score=89.49 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=58.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ .+.|++++|||+++||...+..+...|.++. ..+..+|++||+........+.+
T Consensus 124 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 124 VKGFSLGMKQRLGIALALL----GNPDLLILDEPTNGLDPDGIKELRELILSLR-DQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred HhhCCHHHHHHHHHHHHHh----cCCCEEEECCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHhcCEE
Confidence 4579999999999998776 3568999999999999999999888888876 35788999999875343444443
No 138
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.36 E-value=5.8e-07 Score=87.20 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=58.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1046 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1046 (1058)
+..|||||+++++||..++ .+.+++++|||+.+||...+..+.+.|.++. ..+.-+|++||+......+.+
T Consensus 123 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiii~sH~~~~~~~~~~ 193 (201)
T cd03231 123 VAQLSAGQQRRVALARLLL----SGRPLWILDEPTTALDKAGVARFAEAMAGHC-ARGGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCchhhhhccc
Confidence 4569999999999987776 3668999999999999999999998888875 346789999999864444443
No 139
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.36 E-value=4.5e-07 Score=90.66 Aligned_cols=74 Identities=27% Similarity=0.284 Sum_probs=59.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.++ .+.++++||||+++||..++..+.+.|.++....+.-||++||+........+.+
T Consensus 143 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i 216 (228)
T cd03257 143 PHELSGGQRQRVAIARALA----LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRV 216 (228)
T ss_pred chhcCHHHHHHHHHHHHHh----cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 4569999999999987776 3678999999999999999999999998886333789999999975444444443
No 140
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.35 E-value=5.7e-07 Score=90.82 Aligned_cols=73 Identities=23% Similarity=0.177 Sum_probs=58.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++....+.-+|++||+........+.
T Consensus 143 ~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~ 215 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALA----QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADR 215 (243)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 4569999999999998776 366899999999999999999999998887633467899999988544444444
No 141
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.35 E-value=4.2e-07 Score=90.58 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=58.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++. +.|++++|||+++||..++..+.+.|.++.. . .-+|++||+........+.+
T Consensus 139 ~~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 139 ALGLSGGQQQRLCLARALAN----EPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHHHHHHhCCEE
Confidence 46799999999999877763 6789999999999999999999999998862 3 78999999875444444443
No 142
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=4.6e-07 Score=85.84 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=56.7
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
|||||+++++||..++. ..+++++|||+++||..++..+.+.|.++....+..+|++||+........+.
T Consensus 101 lS~G~~qr~~la~al~~----~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 170 (178)
T cd03229 101 LSGGQQQRVALARALAM----DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADR 170 (178)
T ss_pred CCHHHHHHHHHHHHHHC----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 99999999999887763 67899999999999999999999989887632268999999987544434443
No 143
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.35 E-value=0.026 Score=71.19 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=60.9
Q ss_pred eEEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHh-cCCcc------CCCCccchhhhhhcCC-----c
Q 001536 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF-GCRAK------GTQRAATLKDFIKTGC-----S 88 (1058)
Q Consensus 21 ~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~l-g~~~~------~~~r~~~~~~~i~~~~-----~ 88 (1058)
++.++-|.||..|++.+|+|++|.++|+|||||||||+||||.|+| .|... ...++.++.+|++.|. .
T Consensus 3 ~~~R~gliN~~~~~~~~~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~~~ 82 (1353)
T TIGR02680 3 RPHRAGLVNLWYYDEQEFWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHDER 82 (1353)
T ss_pred eeeeEEEEEeccccceEEecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCCCc
Confidence 5789999999999999999999999999999999999999977554 44321 1246668888998665 2
Q ss_pred eeEEEEEEEe
Q 001536 89 YAMVEVELKN 98 (1058)
Q Consensus 89 ~~~v~~~~~~ 98 (1058)
.+++.++|..
T Consensus 83 ~~y~~~e~~~ 92 (1353)
T TIGR02680 83 VGYLWLEFGR 92 (1353)
T ss_pred ceeEEEEeec
Confidence 3555555544
No 144
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.34 E-value=7.4e-07 Score=89.23 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=57.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++....+..+|++||+.....
T Consensus 130 ~~~LS~G~~qrl~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 130 VRELNGGHRRRVEIARALL----HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 4579999999999998877 3678999999999999999999999998876334778999999885443
No 145
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.34 E-value=4e-07 Score=89.43 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=58.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. +.+++++|||+.+||..++..+.+.|.++. ..+.-||++||+........+.+
T Consensus 126 ~~~LS~G~~qrl~la~al~~----~p~~lllDEP~~~LD~~~~~~~~~~l~~~~-~~~~tii~~sH~~~~~~~~~d~i 198 (210)
T cd03269 126 VEELSKGNQQKVQFIAAVIH----DPELLILDEPFSGLDPVNVELLKDVIRELA-RAGKTVILSTHQMELVEELCDRV 198 (210)
T ss_pred HhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHhhhEE
Confidence 45689999999999887763 568999999999999999999888888875 34678999999875444444443
No 146
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.34 E-value=5.5e-07 Score=88.76 Aligned_cols=74 Identities=28% Similarity=0.290 Sum_probs=59.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 128 ~~~LS~G~~qr~~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i 201 (213)
T cd03301 128 PKQLSGGQRQRVALGRAIV----REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI 201 (213)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 4578999999999998776 3668889999999999999999999998876434788999999875334444443
No 147
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.33 E-value=5.5e-07 Score=89.67 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=58.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ .+.++++||||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 123 ~~~LS~G~~qrv~laral~----~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 196 (230)
T TIGR02770 123 PFQLSGGMLQRVMIALALL----LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEV 196 (230)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999988776 3568999999999999999999889998876334778999999875443444443
No 148
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=5.6e-07 Score=91.08 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=59.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..|+ .+.+++++|||+++||..++..+.+.|.++. .+..||++||+........+++
T Consensus 143 ~~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivtH~~~~~~~~~d~v 215 (250)
T PRK14245 143 SAFALSGGQQQRLCIARAMA----VSPSVLLMDEPASALDPISTAKVEELIHELK--KDYTIVIVTHNMQQAARVSDKT 215 (250)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHhhCCEE
Confidence 35679999999999998776 3678999999999999999999999998875 5689999999975444444443
No 149
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.32 E-value=5.7e-07 Score=90.03 Aligned_cols=73 Identities=22% Similarity=0.187 Sum_probs=58.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++. +.+++++|||+++||..++..+.+.|.++. ..+.-+|++||+........+++
T Consensus 131 ~~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~tii~~sH~~~~~~~~~d~i 203 (232)
T cd03218 131 ASSLSGGERRRVEIARALAT----NPKFLLLDEPFAGVDPIAVQDIQKIIKILK-DRGIGVLITDHNVRETLSITDRA 203 (232)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCEE
Confidence 46789999999999877763 668999999999999999999888888876 34678999999875444444443
No 150
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.32 E-value=7.2e-07 Score=77.22 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=62.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCC-eeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAP-FRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p-~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
+.+|||||++++|||=.|+ +.| +++-|||+.+||...-..+.++|..+-+..++-.+++||.+-..-+|...++
T Consensus 144 P~qLSGGEQQRVAiARAfa-----~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r 218 (228)
T COG4181 144 PAQLSGGEQQRVALARAFA-----GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLR 218 (228)
T ss_pred ccccCchHHHHHHHHHHhc-----CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheee
Confidence 6789999999999997776 345 5568999999999999999999998877788999999999865566665444
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
+
T Consensus 219 ~ 219 (228)
T COG4181 219 L 219 (228)
T ss_pred e
Confidence 3
No 151
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.32 E-value=5.8e-07 Score=88.68 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=58.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++. +.+++++|||+++||..++..+...|.++.. .+..||++||+........+++
T Consensus 133 ~~~LS~G~~qrv~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i 205 (213)
T cd03262 133 PAQLSGGQQQRVAIARALAM----NPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRV 205 (213)
T ss_pred ccccCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 46799999999998877763 5689999999999999999998999988863 4678999999875444444443
No 152
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32 E-value=5.8e-07 Score=90.00 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=59.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..|+ .+.++++||||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 138 ~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i 211 (233)
T cd03258 138 PAQLSGGQKQRVGIARALA----NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV 211 (233)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 4568999999999987775 4678999999999999999999889998876334788999999975444444443
No 153
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.32 E-value=5.6e-07 Score=90.41 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=59.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++.. .+.-+|++||+........+++
T Consensus 140 ~~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i 213 (236)
T cd03219 140 PAGELSYGQQRRLEIARALA----TDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRV 213 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEE
Confidence 35679999999999988776 36789999999999999999999999988763 5778999999875444444443
No 154
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.32 E-value=5.3e-07 Score=89.42 Aligned_cols=72 Identities=26% Similarity=0.288 Sum_probs=58.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++. .+.-+|++||+........+.+
T Consensus 131 ~~~LS~G~~qrv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sH~~~~~~~~~d~i 202 (220)
T cd03263 131 ARTLSGGMKRKLSLAIALI----GGPSVLLLDEPTSGLDPASRRAIWDLILEVR--KGRSIILTTHSMDEAEALCDRI 202 (220)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEECCCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhcCEE
Confidence 4579999999999998776 4678999999999999999999999998876 4578999999875333444443
No 155
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.32 E-value=5.4e-07 Score=91.95 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=58.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........+.
T Consensus 141 ~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 213 (269)
T PRK11831 141 PSELSGGMARRAALARAIA----LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADH 213 (269)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCE
Confidence 4679999999999998776 356899999999999999999989999887633478999999986433333333
No 156
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=6e-07 Score=88.23 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=58.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..|+ .+.+++++|||+++||..++..+.+.|.++. .+.-+|++||+........+++
T Consensus 128 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 128 IGSLSGGMRRRVGIAQALV----GDPSILIVDEPTAGLDPEERIRFRNLLSELG--EDRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEcCCHHHHHHhCCEE
Confidence 4569999999999987776 4678889999999999999999999998886 4588999999875443444443
No 157
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.31 E-value=6e-07 Score=89.53 Aligned_cols=67 Identities=22% Similarity=0.153 Sum_probs=56.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
+..|||||+++++||..|+. +.++++||||+++||..++..+.+.|.++....+.-||++||+....
T Consensus 144 ~~~LS~Ge~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 144 PAQLSGGEQQRVALARAFNG----RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA 210 (228)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 45689999999999887763 67899999999999999999988999887633478899999997543
No 158
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=7.1e-07 Score=89.09 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=59.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++. +.+++++|||+++||...+..+.+.|.++..+.+..+|++||+........+++
T Consensus 127 ~~~LS~G~~qrv~laral~~----~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 200 (232)
T PRK10771 127 PGQLSGGQRQRVALARCLVR----EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS 200 (232)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 35699999999999987763 668999999999999999999889898876334789999999985434444443
No 159
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.31 E-value=5.1e-07 Score=89.38 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=59.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++. ..+.-+|++||+........++
T Consensus 134 ~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~tH~~~~~~~~~d~ 205 (218)
T cd03266 134 VGGFSTGMRQKVAIARALV----HDPPVLLLDEPTTGLDVMATRALREFIRQLR-ALGKCILFSTHIMQEVERLCDR 205 (218)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhcCE
Confidence 4578999999999988776 4678999999999999999999999998875 3578999999997544444444
No 160
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=6.6e-07 Score=91.98 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=61.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..||||++++++||-.++ ...+++++|||+++||..++..+.+.|.++....+..||++||+........+++-
T Consensus 141 ~~~~LSgGq~qrv~iAraL~----~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 141 SPFELSGGQKRRVAIAGVVA----MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 35679999999999998776 35689999999999999999999999988864347899999999754444455543
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
+
T Consensus 217 ~ 217 (287)
T PRK13637 217 V 217 (287)
T ss_pred E
Confidence 3
No 161
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=7e-07 Score=89.55 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=59.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 128 ~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i 202 (241)
T PRK14250 128 DVKNLSGGEAQRVSIARTLA----NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYT 202 (241)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEE
Confidence 35579999999999998776 3668999999999999999999888888876334789999999975333334443
No 162
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=6.9e-07 Score=91.07 Aligned_cols=73 Identities=27% Similarity=0.303 Sum_probs=58.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++ ...++++||||+++||...+..+.+.|.++....+.-+|++||+........+.
T Consensus 158 ~~~LS~Gq~qrv~lAral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 158 PDELSGGMQQRVGLARALA----VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 3568999999999998776 466899999999999999999999999888633468899999987544444444
No 163
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.31 E-value=6.2e-07 Score=89.49 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=59.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. +.+++++|||+++||..++..+.+.|.++....+.-+|++||+........+.+
T Consensus 151 ~~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 224 (236)
T cd03267 151 VRQLSLGQRMRAEIAAALLH----EPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRV 224 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEE
Confidence 45699999999999887764 568999999999999999999999998886434678999999985444444443
No 164
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.31 E-value=8.2e-07 Score=87.26 Aligned_cols=76 Identities=26% Similarity=0.316 Sum_probs=63.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeE
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1050 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1050 (1058)
+++||||.++++.||+.+|. ...++|-|||+++||..+...++++|.++.+..++=+|||||+-.......++|-|
T Consensus 151 PhelSGGMrQRV~IAmala~----~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~V 226 (316)
T COG0444 151 PHELSGGMRQRVMIAMALAL----NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV 226 (316)
T ss_pred CcccCCcHHHHHHHHHHHhC----CCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEE
Confidence 57799999999999988773 34577899999999999999999999999866799999999998656666665533
No 165
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.30 E-value=7e-07 Score=91.03 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=59.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ .+.++++||||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 147 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i 220 (267)
T PRK15112 147 PHMLAPGQKQRLGLARALI----LRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQV 220 (267)
T ss_pred chhcCHHHHHHHHHHHHHH----hCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEE
Confidence 4579999999999998776 3678999999999999999999889998876334778999999975333334443
No 166
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=8.1e-07 Score=90.53 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=59.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. +.+++++|||+++||...+..+...|.++....+.-||++||+........+++
T Consensus 145 ~~~LSgG~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i 218 (265)
T PRK10575 145 VDSLSGGERQRAWIAMLVAQ----DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL 218 (265)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 45689999999999887763 678999999999999999999899998876334788999999975333444443
No 167
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.29 E-value=6.8e-07 Score=92.81 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=59.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||..|+ .+.+++++|||++|||+.++..+.+.|.++. ..+.-||++||+........+++
T Consensus 122 ~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~tvi~~sH~~~~~~~~~d~v 194 (302)
T TIGR01188 122 VGTYSGGMRRRLDIAASLI----HQPDVLFLDEPTTGLDPRTRRAIWDYIRALK-EEGVTILLTTHYMEEADKLCDRI 194 (302)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCEE
Confidence 4679999999999887766 3668999999999999999999999998876 35788999999875444444444
No 168
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=1.5e-06 Score=88.73 Aligned_cols=69 Identities=22% Similarity=0.165 Sum_probs=59.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
...||||++++++|+..+++..+.+.+++++|||+++||+.....+.+.|.++. .+.++|++||++..+
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~--~~~tii~isH~~~~~ 236 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS--RSHQVLCITHLPQVA 236 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEechHHHH
Confidence 456999999999999877765566888999999999999999988888888876 578999999998543
No 169
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=7.8e-07 Score=90.43 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=60.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..|||||+.+++||..++ .+.++++||||+++||..++..+.+.|.++....+.-+|++||+........+++-
T Consensus 147 ~~~~LSgGq~qrv~laral~----~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~ 222 (261)
T PRK14258 147 SALDLSGGQQQRLCIARALA----VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222 (261)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEE
Confidence 35679999999999998876 46789999999999999999998898888753357899999999754444444443
No 170
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.29 E-value=8.1e-07 Score=82.45 Aligned_cols=69 Identities=26% Similarity=0.294 Sum_probs=56.2
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
|||||+.+++||-.++ .+.+++++|||+.+||..++..+.+.|.++. ..+.-+|++||+........++
T Consensus 83 LS~G~~qrl~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~~~~~~d~ 151 (163)
T cd03216 83 LSVGERQMVEIARALA----RNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVIFISHRLDEVFEIADR 151 (163)
T ss_pred cCHHHHHHHHHHHHHh----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 9999999999987766 3568899999999999999999999998875 3478899999987534444444
No 171
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.29 E-value=1.1e-06 Score=77.98 Aligned_cols=65 Identities=31% Similarity=0.298 Sum_probs=57.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
+-.||||.|+++.||=.+| ....|+.+||||+++|.-.|..+-.+|+++++..+.|+++|||.-.
T Consensus 130 i~qLSGGmrQRvGiARALa----~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 130 IWQLSGGMRQRVGIARALA----VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred eEeecchHHHHHHHHHHhh----cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 5569999999999998777 3445788999999999999999999999999888999999999753
No 172
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=7.7e-07 Score=91.97 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=59.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..|+. ..++++||||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 148 ~~~LS~Gq~qrv~laral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAM----DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHh----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 46799999999999877763 567999999999999999999888888876434788999999875334444443
No 173
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=8.3e-07 Score=89.91 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=58.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 144 ~~~LSgG~~qrv~laral~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALA----FQPEVLLADEPTANLDPENTAKIESLFLELK--KDMTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEE
Confidence 5679999999999998776 3678999999999999999999999998875 4788999999875444444443
No 174
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.28 E-value=7.8e-07 Score=90.37 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=59.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ ...+++++|||+++||..++..+.+.|.++. ..+..+|++||+........+++
T Consensus 150 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivsH~~~~~~~~~d~i 222 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALA----MEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSSHV 222 (257)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEE
Confidence 5679999999999987776 3568999999999999999999999888876 35789999999875444444444
No 175
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=7.3e-07 Score=90.56 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=59.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..|+. ..+++++|||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 151 ~~~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~~tiiivsH~~~~~~~~~d~i 223 (258)
T PRK14268 151 PALSLSGGQQQRLCIARTLAV----KPKIILFDEPTSALDPISTARIEDLIMNLK--KDYTIVIVTHNMQQAARISDYT 223 (258)
T ss_pred ChhhCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHh--hCCEEEEEECCHHHHHHhCCEE
Confidence 356799999999999987763 568999999999999999999999998886 4789999999975444444544
No 176
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.28 E-value=7.6e-07 Score=89.92 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=59.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++. .+.-+|++||+........+.+
T Consensus 141 ~~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivsH~~~~~~~~~d~i 213 (247)
T TIGR00972 141 SALGLSGGQQQRLCIARALA----VEPEVLLLDEPTSALDPIATGKIEELIQELK--KKYTIVIVTHNMQQAARISDRT 213 (247)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hcCeEEEEecCHHHHHHhCCEE
Confidence 35679999999999988777 3568899999999999999999999998876 3578999999986444444443
No 177
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=7.9e-07 Score=89.20 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=58.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. +.+++++|||+++||..++..+.+.|.++. ..+.-+|++||+........+++
T Consensus 135 ~~~LS~G~~qrl~la~al~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~i 207 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMS----QPRLLLLDEPSLGLAPIIIQQIFDTIEQLR-EQGMTIFLVEQNANQALKLADRG 207 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHh----CCCEEEEcCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHHHHHhhCCEE
Confidence 45689999999999877763 668999999999999999999889888876 35788999999874344444443
No 178
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.28 E-value=7.3e-07 Score=93.43 Aligned_cols=74 Identities=30% Similarity=0.313 Sum_probs=60.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.|+ ...|+++|||||++||+..+..+.+.|.++....+.-||++||+........+++
T Consensus 127 p~~LSGGq~QRV~lARAL~----~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 127 PDELSGGMQQRVGLARALA----AEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4468999999999998776 4668999999999999999999999998876445788999999975444444444
No 179
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=7.3e-07 Score=93.01 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=61.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
+..||||++++++||..++. ..+++|+|||+++||..++..+++.|.++....+.-+|+|||+........+++-
T Consensus 151 p~~LSgGq~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~ 225 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIAC----RPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKII 225 (326)
T ss_pred chhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 56799999999999988874 5578899999999999999999999999864457899999999754444555543
No 180
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.28 E-value=7.5e-07 Score=93.15 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=60.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||-.|+ ...++++||||+++||..++..+.+.|.++....+.-+|++||+........+++
T Consensus 98 ~~~LSgGq~qRvalaraL~----~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i 171 (325)
T TIGR01187 98 PHQLSGGQQQRVALARALV----FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI 171 (325)
T ss_pred hhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999998776 3568999999999999999999999998876444789999999975444444444
No 181
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=8.4e-07 Score=91.28 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=59.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||-.|+. +.++++||||+++||...+..+.+.|.++. ..+..||++||+........+++
T Consensus 141 ~~~~LSgGqkqrvaiA~aL~~----~p~illLDEPt~gLD~~~~~~l~~~l~~l~-~~g~til~vtHd~~~~~~~~dri 214 (288)
T PRK13643 141 SPFELSGGQMRRVAIAGILAM----EPEVLVLDEPTAGLDPKARIEMMQLFESIH-QSGQTVVLVTHLMDDVADYADYV 214 (288)
T ss_pred CcccCCHHHHHHHHHHHHHHh----CCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhCCEE
Confidence 356799999999999988764 668999999999999999999888888775 35789999999975344445544
No 182
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.28 E-value=7.4e-07 Score=89.65 Aligned_cols=74 Identities=26% Similarity=0.327 Sum_probs=59.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ ...+++++|||+++||..++..+.+.|.++....+.-||++||+........+.+
T Consensus 133 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i 206 (242)
T cd03295 133 PHELSGGQQQRVGVARALA----ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRI 206 (242)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEE
Confidence 4679999999999887776 4678999999999999999999889898876333788999999985444444443
No 183
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.28 E-value=9.8e-07 Score=87.49 Aligned_cols=71 Identities=32% Similarity=0.342 Sum_probs=57.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++. +.+++++|||+++||..++..+.+.|.++. .+.-+|++||+.... ...+++
T Consensus 138 ~~~LSgG~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~~sH~~~~~-~~~d~v 208 (220)
T cd03245 138 GRGLSGGQRQAVALARALLN----DPPILLLDEPTSAMDMNSEERLKERLRQLL--GDKTLIIITHRPSLL-DLVDRI 208 (220)
T ss_pred CccCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH-HhCCEE
Confidence 56799999999999987763 578999999999999999999999998876 347899999987533 444443
No 184
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.28 E-value=8.3e-07 Score=87.63 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=57.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++ .+.+++++|||+++||+..+..+.+.|.++. ..+.-+|++||+........+.
T Consensus 134 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~tiiivtH~~~~~~~~~d~ 205 (214)
T cd03292 134 PAELSGGEQQRVAIARAIV----NSPTILIADEPTGNLDPDTTWEIMNLLKKIN-KAGTTVVVATHAKELVDTTRHR 205 (214)
T ss_pred hhhcCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCE
Confidence 3568999999999998776 3668999999999999999999999998875 3477899999987533333343
No 185
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.27 E-value=1e-06 Score=89.84 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=59.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||-.++. +.+++++|||+.+||..++..+.+.|.++....+..+|++||+........+++
T Consensus 141 ~~~LS~Gq~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 141 VDTLSGGQRQRAWIAMVLAQ----ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred cccCChHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 56799999999999887763 668999999999999999999999998876334788999999985444445543
No 186
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.27 E-value=8.7e-07 Score=89.96 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=58.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..++. +.+++++|||+++||..++..+.+.|.++. .+..||++||+........+++
T Consensus 146 ~~~~LSgGq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 146 SALGLSGGQQQRLCIARALAV----EPEVLLMDEPASALDPIATQKIEELIHELK--ARYTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred CcccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCeEEEEEecHHHHHHhCCEE
Confidence 356799999999998877763 568999999999999999999999998875 4678999999975444444443
No 187
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.27 E-value=8e-07 Score=84.57 Aligned_cols=70 Identities=23% Similarity=0.218 Sum_probs=56.9
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
|||||+.+++||..++. +.+++++|||+++||..++..+.+.|.++. ..+..+|++||+........+.+
T Consensus 105 LS~G~~qrl~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~~~~~~d~v 174 (182)
T cd03215 105 LSGGNQQKVVLARWLAR----DPRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGKAVLLISSELDELLGLCDRI 174 (182)
T ss_pred cCHHHHHHHHHHHHHcc----CCCEEEECCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999977763 668999999999999999999999998875 34788999999874444444443
No 188
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.27 E-value=1.4e-06 Score=84.53 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=55.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
+..|||||+.+++||..++. ..|++++|||+++||..++..+.+.|.++. ..+..+|++||+....
T Consensus 125 ~~~LS~G~~~rv~laral~~----~p~~lilDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 125 CGLLSSGQKRQVALLRLWMS----KAKLWLLDEPLVALDELSLLTIITKIQEHR-AKGGAVLLTSHQDLPL 190 (200)
T ss_pred hhhcCHHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHH-HcCCEEEEEeCCchhc
Confidence 45699999999999877763 668999999999999999999889998875 3578899999997533
No 189
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.27 E-value=1.3e-06 Score=84.73 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=54.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||...+..+.+.|.++. ..+.-+|++||+..
T Consensus 125 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sH~~~ 188 (198)
T TIGR01189 125 AAQLSAGQQRRLALARLWL----SRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARGGIVLLTTHQDL 188 (198)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEEEcccc
Confidence 4679999999999887766 3678999999999999999988888888875 35778999999985
No 190
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=9.9e-07 Score=88.92 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=58.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.++ ...+++++|||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 140 ~~~LS~G~~qrv~laral~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~tH~~~~~~~~~d~i 211 (246)
T PRK14269 140 ALALSGGQQQRLCIARALA----IKPKLLLLDEPTSALDPISSGVIEELLKELS--HNLSMIMVTHNMQQGKRVADYT 211 (246)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHhhCcEE
Confidence 4569999999999987766 3678999999999999999999889888876 5789999999975444444443
No 191
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=9.3e-07 Score=90.96 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=60.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||-.|+. ..+++++|||+++||+.++..+...|.++....+..||++||+........+++
T Consensus 142 ~~~~LSgGq~qrv~laraL~~----~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 142 SPFQMSGGQMRKIAIVSILAM----NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHh----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 356799999999999877763 568999999999999999999889888876445799999999975333444444
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=8.5e-07 Score=94.19 Aligned_cols=74 Identities=30% Similarity=0.338 Sum_probs=59.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..|+. ..++++||||+++||+.++..+.+.|.++....+.-||++||+........+.+
T Consensus 162 ~~~LSgGq~QRv~LArAL~~----~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAI----NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 45799999999999987763 568999999999999999999999998876435778999999875444444443
No 193
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.27 E-value=9.1e-07 Score=87.95 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=58.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.++ .+.+++++|||+++||..++..+.+.|.++. ..+..+|++||+........+.+
T Consensus 130 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~i 202 (222)
T cd03224 130 AGTLSGGEQQMLAIARALM----SRPKLLLLDEPSEGLAPKIVEEIFEAIRELR-DEGVTILLVEQNARFALEIADRA 202 (222)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEECCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhccEE
Confidence 4568999999999987765 4678999999999999999999999998876 35789999999875334444443
No 194
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.27 E-value=8.6e-07 Score=89.98 Aligned_cols=73 Identities=23% Similarity=0.145 Sum_probs=58.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++....+.-+|++||+........++
T Consensus 146 ~~~LSgG~~qrv~laral~----~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~ 218 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLV----TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQR 218 (253)
T ss_pred chhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 5578999999999997775 467899999999999999999999999887633478999999987433333333
No 195
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.27 E-value=9e-07 Score=88.40 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=59.1
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++....+.-+|++||+........+++
T Consensus 128 ~~~~LS~G~~qrv~la~al~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 202 (230)
T TIGR03410 128 RGGDLSGGQQQQLAIARALV----TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRY 202 (230)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEE
Confidence 35568999999999887776 3668999999999999999999888888876333789999999975333344444
No 196
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=9e-07 Score=91.18 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=60.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||-.++ ...+++++|||+++||+..+..+.+.|.++....+.-||++||+........+++
T Consensus 142 ~~~~LSgGq~qrv~lAraL~----~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 142 SPFELSGGQMRRVAIAGVLA----MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999998776 4678999999999999999999999998886444789999999975444455554
No 197
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.26 E-value=9.3e-07 Score=89.63 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=59.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++. ..+.-||++||+........+++
T Consensus 141 ~~~~LS~Gq~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tvi~~tH~~~~~~~~~d~i 214 (250)
T PRK11264 141 YPRRLSGGQQQRVAIARALA----MRPEVILFDEPTSALDPELVGEVLNTIRQLA-QEKRTMVIVTHEMSFARDVADRA 214 (250)
T ss_pred ChhhCChHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEE
Confidence 35679999999999998776 3568999999999999999999899888876 34778999999875443434443
No 198
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.26 E-value=1.6e-06 Score=85.20 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=59.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. +.+++++|||+.+||..++..+.+.|.++. ..+..+|++||+........+++
T Consensus 135 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~~~i 207 (214)
T PRK13543 135 VRQLSAGQKKRLALARLWLS----PAPLWLLDEPYANLDLEGITLVNRMISAHL-RGGGAALVTTHGAYAAPPVRTRM 207 (214)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecChhhhhhhcceE
Confidence 45699999999999887763 668999999999999999998888888875 35678999999885444555443
No 199
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=1e-06 Score=89.35 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||-.++ .+.+++++|||+++||..++..+++.|.++. .+.-+|++||+........+++
T Consensus 147 ~~~~LSgG~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tvii~sH~~~~~~~~~d~i 219 (254)
T PRK14273 147 NALSLSGGQQQRLCIARTLA----IEPNVILMDEPTSALDPISTGKIEELIINLK--ESYTIIIVTHNMQQAGRISDRT 219 (254)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999887775 4568999999999999999999999999885 4678999999875444444443
No 200
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=9.2e-07 Score=89.59 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..|+. +.+++++|||+++||..++..+.+.|.++. .+..+|++||+........+.+
T Consensus 143 ~~~~LS~Gq~qr~~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tili~sH~~~~~~~~~d~i 215 (250)
T PRK14262 143 PGTRLSGGQQQRLCIARALAV----EPEVILLDEPTSALDPIATQRIEKLLEELS--ENYTIVIVTHNIGQAIRIADYI 215 (250)
T ss_pred ChhhcCHHHHHHHHHHHHHhC----CCCEEEEeCCccccCHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhCCEE
Confidence 356799999999999887763 568999999999999999999999998886 4688999999875444444443
No 201
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.26 E-value=3.3e-07 Score=81.33 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=31.9
Q ss_pred EEEEecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 25 VRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 25 l~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+-||+..++.+|...|| +-+|+||||+||||+||+|.
T Consensus 13 VsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It 52 (249)
T COG4674 13 VSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT 52 (249)
T ss_pred EEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeec
Confidence 3444666667778877776 99999999999999999995
No 202
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=8.9e-07 Score=92.29 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=60.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
++.||||++++++||..|+. ..+++|+|||+++||..++..++++|.++....+.-+|+|||+........+++
T Consensus 152 p~~LSgGq~QRv~iArAL~~----~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 PHMFSGGQRQRIAIARALML----DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred CccCCHHHHHHHHHHHHHHc----CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 46799999999999988774 457899999999999999999999999886445889999999975444445544
No 203
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.25 E-value=1e-06 Score=89.18 Aligned_cols=74 Identities=22% Similarity=0.257 Sum_probs=59.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.++ .+.++++||||+++||..++..+...|.++....+..||++||+........+++
T Consensus 138 ~~~LS~Gq~qrv~laral~----~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 138 PFEMSGGMLQRMMIALALL----CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred CcccCHHHHHHHHHHHHHh----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEE
Confidence 5679999999999987776 3568999999999999999999999998876434789999999875433334443
No 204
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.25 E-value=1e-06 Score=81.79 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
||||||.+++||..++. ..+++++|||+++||..++..+.+.|.++....+.-+|++||+........+.
T Consensus 72 LSgGq~qrv~laral~~----~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 141 (177)
T cd03222 72 LSGGELQRVAIAAALLR----NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDR 141 (177)
T ss_pred CCHHHHHHHHHHHHHhc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCE
Confidence 99999999999887763 56888999999999999999988888887532237899999987433333343
No 205
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=1e-06 Score=91.50 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=59.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.|+. ..++++||||+++||...+..+.+.|.++. ..+..||++||+........+++
T Consensus 174 ~~~LSgGqkqRvaiAraL~~----~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~-~~g~TiiivtHd~~~~~~~adri 246 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAI----QPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANNKTVFVITHTMEHVLEVADEV 246 (320)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhCCEE
Confidence 45689999999999987763 678899999999999999999999998875 35789999999975444444444
No 206
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.25 E-value=9.3e-07 Score=88.70 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=58.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++ .+.+++++|||+++||...+..+.+.|.++....+.-||++||+........++
T Consensus 118 ~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~ 190 (251)
T PRK09544 118 MQKLSGGETQRVLLARALL----NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDE 190 (251)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 5679999999999987776 367899999999999999999988888887633378899999997543343444
No 207
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.25 E-value=1.1e-06 Score=89.01 Aligned_cols=77 Identities=22% Similarity=0.160 Sum_probs=59.0
Q ss_pred CccCCCCchhHHHHHHHHHhh-hh-cCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALH-EM-TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~-~~-~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..|+.. +- .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........++
T Consensus 132 ~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 210 (258)
T PRK13548 132 YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADR 210 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCE
Confidence 467999999999999877731 00 345788999999999999999999999887633567899999987433334444
No 208
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.25 E-value=8.6e-07 Score=87.94 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=58.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. +.+++++|||+++||..++..+.+.|.++. ..+..+|++||+........+++
T Consensus 122 ~~~LS~G~~~rv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~L~~~~-~~~~tiii~sH~~~~~~~~~d~i 194 (223)
T TIGR03740 122 AKQFSLGMKQRLGIAIALLN----HPKLLILDEPTNGLDPIGIQELRELIRSFP-EQGITVILSSHILSEVQQLADHI 194 (223)
T ss_pred HhhCCHHHHHHHHHHHHHhc----CCCEEEECCCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHhcCEE
Confidence 45789999999999877763 668999999999999999999999998875 35778999999985443444443
No 209
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.25 E-value=1.9e-06 Score=84.10 Aligned_cols=64 Identities=23% Similarity=0.192 Sum_probs=54.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
+..|||||+.+++||..++. +.+++++|||+.+||...+..+.+.|.++. ..+.-+|++||+..
T Consensus 125 ~~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~ 188 (207)
T PRK13539 125 FGYLSAGQKRRVALARLLVS----NRPIWILDEPTAALDAAAVALFAELIRAHL-AQGGIVIAATHIPL 188 (207)
T ss_pred hhhcCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCch
Confidence 35689999999998877763 568999999999999999999889888875 35788999999975
No 210
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.25 E-value=1.2e-06 Score=89.18 Aligned_cols=75 Identities=20% Similarity=0.113 Sum_probs=59.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||-.|+ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 148 ~~~~LS~Gq~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i 222 (258)
T PRK11701 148 LPTTFSGGMQQRLQIARNLV----THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRL 222 (258)
T ss_pred CCccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 34679999999999998775 4678999999999999999998888888876334788999999985444344443
No 211
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=9.8e-07 Score=92.95 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=60.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.|+ ...++++||||+++||...+..+...|.++....+.-+|++||+........+++
T Consensus 132 ~~~LSgGq~QRvalARAL~----~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i 205 (356)
T PRK11650 132 PRELSGGQRQRVAMGRAIV----REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV 205 (356)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999998776 4667888999999999999999888888876445789999999975444444544
No 212
>PRK10908 cell division protein FtsE; Provisional
Probab=98.25 E-value=1.1e-06 Score=87.05 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=57.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+...|.++. ..+.-+|++||+........++
T Consensus 135 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~ 206 (222)
T PRK10908 135 PIQLSGGEQQRVGIARAVV----NKPAVLLADEPTGNLDDALSEGILRLFEEFN-RVGVTVLMATHDIGLISRRSYR 206 (222)
T ss_pred chhCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 4579999999999998776 3568999999999999999999889888875 3478899999987543333444
No 213
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.25 E-value=1.1e-06 Score=89.19 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=58.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++....+..+|++||+........+++
T Consensus 144 ~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 217 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALA----MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRV 217 (252)
T ss_pred hhhcCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 3568999999999998776 3567889999999999999999999998876334789999999975333444443
No 214
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=1.1e-06 Score=89.48 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=59.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..++. +.++++||||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 152 ~~~~LS~Gq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivtH~~~~~~~~~d~i 224 (259)
T PRK14274 152 QALSLSGGQQQRLCIARALAT----NPDVLLMDEPTSALDPVSTRKIEELILKLK--EKYTIVIVTHNMQQAARVSDQT 224 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhCCEE
Confidence 356799999999998877763 668999999999999999999889888876 4789999999975434444443
No 215
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=1e-06 Score=89.20 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=59.1
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 144 ~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~L~~~~--~~~tiiivsH~~~~~~~~~d~v 216 (251)
T PRK14270 144 SALKLSGGQQQRLCIARTIA----VKPDVILMDEPTSALDPISTLKIEDLMVELK--KEYTIVIVTHNMQQASRVSDYT 216 (251)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCeEEEEEcCHHHHHHhcCEE
Confidence 35679999999999998776 3678999999999999999999999998886 4588999999875333334443
No 216
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.24 E-value=1.1e-06 Score=89.34 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=58.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.++ .+.+++++|||+++||..++..+.+.|.++. .+..+|++||+........+.+
T Consensus 154 ~~~LS~Gq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tiii~sH~~~~~~~~~d~i 225 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIA----IRPEVLLLDEPCSALDPISTGRIEELITELK--QDYTVVIVTHNMQQAARCSDYT 225 (260)
T ss_pred CCCCCHHHHHHHHHHHHHH----CCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEE
Confidence 5579999999999998776 3668999999999999999999999998885 4678999999975444444443
No 217
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.24 E-value=1.1e-06 Score=88.85 Aligned_cols=77 Identities=27% Similarity=0.481 Sum_probs=61.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..||||++.+++||..+++....+.+++++|||+++||+..+..+...|.++. .++++|++||.+. .....+++-
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~--~~~~ii~~~h~~~-~~~~~d~i~ 231 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS--DGAQFITTTFRPE-LLEVADKFY 231 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHH-HHhhCCEEE
Confidence 4567999999999999988865456788999999999999999999888888875 4778887777754 455555543
No 218
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.24 E-value=1.1e-06 Score=91.67 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=60.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||++++++||..|+ ...+++|+|||+++||..++..+++.|.++....+.-+|+|||+........+++
T Consensus 159 p~~LSgG~~QRv~iArAL~----~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALI----LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999998886 3568899999999999999999999998886444789999999975444444444
No 219
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.24 E-value=9.9e-07 Score=93.24 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=60.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.|+. ..++++||||+++||...+..+...|.++.+..+.-+|++||+........+++
T Consensus 142 p~~LSgGq~QRVaLARaL~~----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri 215 (375)
T PRK09452 142 PHQLSGGQQQRVAIARAVVN----KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215 (375)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 45799999999999987773 457888999999999999999888888877445889999999985444445554
No 220
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.8e-06 Score=90.03 Aligned_cols=67 Identities=33% Similarity=0.433 Sum_probs=56.6
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1045 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1045 (1058)
.|||||+.+++||=.+- ...|+.++|||+.|||+.+.+.++.+|.+-+ .+.-+|+|||+......++
T Consensus 474 ~LSGGE~rRLAlAR~LL----~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~le~~d 540 (573)
T COG4987 474 RLSGGERRRLALARALL----HDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLERMD 540 (573)
T ss_pred cCCchHHHHHHHHHHHH----cCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccccHhhcC
Confidence 47999999999984332 2889999999999999999999999998877 7889999999986555444
No 221
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=1e-06 Score=90.96 Aligned_cols=74 Identities=26% Similarity=0.272 Sum_probs=59.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||-.++ ...++++||||+++||+.++..+.+.|.++. ..+.-||++||+........+++
T Consensus 162 ~~~~LSgGqkqrvalA~aL~----~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILA----MEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeeCHHHHHHhCCEE
Confidence 45679999999999997776 3568999999999999999988888888875 35788999999975344445544
No 222
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.24 E-value=1.3e-06 Score=89.08 Aligned_cols=74 Identities=27% Similarity=0.245 Sum_probs=59.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.++. ..+++++|||+++||...+..+.+.|.++....+..||++||+........+++
T Consensus 150 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQ----QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred ccccCHHHHHHHHHHHHHhc----CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 45689999999999987763 567888999999999999999999988886434789999999985333344443
No 223
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.24 E-value=9.8e-07 Score=91.68 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=59.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||..|+ ...++++||||+++||+.++..+.+.|.++. ..+.-||++||+........+++
T Consensus 133 ~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~til~~sH~~~~~~~~~d~i 205 (303)
T TIGR01288 133 VALLSGGMKRRLTLARALI----NDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAERLCDRL 205 (303)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCEE
Confidence 4579999999999998776 3568999999999999999999999999886 35788999999975444444443
No 224
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=1.2e-06 Score=88.91 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=58.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+.+++||..++. ..+++++|||+.+||..++..+.+.|.++. ..+.-+|++||+........+.
T Consensus 136 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~l~-~~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 136 LTDLSGGQRQRAFLAMVLAQ----DTPVVLLDEPTTYLDINHQVELMRLMRELN-TQGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHhcCE
Confidence 46799999999999877763 568999999999999999999888888875 3478899999987544444444
No 225
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.24 E-value=0.015 Score=64.46 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchhHH
Q 001536 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEI 719 (1058)
Q Consensus 640 ~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l 719 (1058)
++....-+++++..=...+-.+...+++++...+.+.+++.....+...++......++-+.-+-+- .+.+.+.+
T Consensus 256 ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEm-----AEERaesL 330 (1243)
T KOG0971|consen 256 ELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEM-----AEERAESL 330 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001536 720 SQEISNIQEEIQEKEIILEKLQFSMNEA--------EAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSES 791 (1058)
Q Consensus 720 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1058)
+.++..+..++++++..++-++.++..- .-+...++.+-..+...+-.+.+-...-......+..+++....
T Consensus 331 Q~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~s 410 (1243)
T KOG0971|consen 331 QQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNS 410 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 001536 792 EKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYS 871 (1058)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 871 (1058)
++.++.... ..+..+++.++..+..++.++....-.-.+.....+. ...+++--..+++.-..+..++.-..
T Consensus 411 E~~eL~r~k-E~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdk-------nlnlEekVklLeetv~dlEalee~~E 482 (1243)
T KOG0971|consen 411 ELEELRRQK-ERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDK-------NLNLEEKVKLLEETVGDLEALEEMNE 482 (1243)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhh-------ccCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Q 001536 872 ESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWG---KFQRNATLLKRQLTWQFNGHLG 936 (1058)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~f~~~~~ 936 (1058)
...+...+.--++.++++-+......+...+....+.+-.+-. +|......+...+...-..-+.
T Consensus 483 QL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~S 550 (1243)
T KOG0971|consen 483 QLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQES 550 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
No 226
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=1e-06 Score=92.79 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=59.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||..|+ .+.+++++|||+++||+.++..+.+.|.++....+.-+|++||+........+++
T Consensus 138 ~~~LSgGq~qRv~lAraL~----~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v 211 (343)
T PRK11153 138 PAQLSGGQKQRVAIARALA----SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRV 211 (343)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999987776 3678999999999999999999999998886334778999999875333434443
No 227
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.24 E-value=1.5e-06 Score=86.16 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=58.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++....+..+|++||+.... ...+++
T Consensus 135 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~-~~~d~i 207 (225)
T PRK10247 135 IAELSGGEKQRISLIRNLQ----FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI-NHADKV 207 (225)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH-HhCCEE
Confidence 5678999999999887776 367899999999999999999888888887643478899999997533 344444
No 228
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.24 E-value=1.1e-06 Score=86.82 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=59.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. +.+++++|||+.+||..++..+.+.|.++. ..+..+|++||+........+.+
T Consensus 111 ~~~LS~G~~qrv~laral~~----~p~llilDEP~~~LD~~~~~~l~~~l~~~~-~~~~tvii~sH~~~~~~~~~d~i 183 (223)
T TIGR03771 111 VGELSGGQRQRVLVARALAT----RPSVLLLDEPFTGLDMPTQELLTELFIELA-GAGTAILMTTHDLAQAMATCDRV 183 (223)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEE
Confidence 45689999999999877763 678999999999999999999999998876 35789999999975444444443
No 229
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.23 E-value=1.2e-06 Score=91.45 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=59.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||-.|+ ...+++++|||+++||+.++..+++.|.++.+..+.-+|++||+........+++
T Consensus 138 ~~~LSgGqkQRV~IARAL~----~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v 211 (343)
T TIGR02314 138 PSNLSGGQKQRVAIARALA----SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211 (343)
T ss_pred hhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999998777 3567889999999999999999999999886444788999999864333444444
No 230
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.23 E-value=1.1e-06 Score=88.62 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=57.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++. +.+++++|||+++||...+..+.+.|.++. .+.-+|++||+........+++
T Consensus 141 ~~~LS~Ge~qrv~laral~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~~sH~~~~~~~~~d~i 212 (242)
T TIGR03411 141 AGLLSHGQKQWLEIGMLLMQ----DPKLLLLDEPVAGMTDEETEKTAELLKSLA--GKHSVVVVEHDMEFVRSIADKV 212 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEecCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEE
Confidence 46789999999998877663 568999999999999999999999998886 4678999999875333334443
No 231
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.23 E-value=1.3e-06 Score=88.46 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=58.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..++. +.+++++|||+++||..++..+.+.|.++. .+..||++||+........+++
T Consensus 143 ~~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~~~~~d~v 215 (250)
T PRK14240 143 SALGLSGGQQQRLCIARALAV----EPEVLLMDEPTSALDPISTLKIEELIQELK--KDYTIVIVTHNMQQASRISDKT 215 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEEeCHHHHHhhCCEE
Confidence 356799999999999977763 568999999999999999999888888875 4688999999975334444443
No 232
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=1.7e-06 Score=83.89 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC-CCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV-GLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~-~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..|+. ..+++++|||+++||...+..+.+.|.++....+..+|++|||.. ......+++
T Consensus 115 ~~~~LS~Ge~qrl~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i 190 (202)
T cd03233 115 FVRGISGGERKRVSIAEALVS----RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKV 190 (202)
T ss_pred chhhCCHHHHHHHHHHHHHhh----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeE
Confidence 456799999999999987773 568999999999999999999999998886323567888888763 233344443
No 233
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.23 E-value=1.2e-06 Score=88.85 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++. .+..||++||+........+++
T Consensus 145 ~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~~sH~~~~~~~~~d~i 217 (252)
T PRK14239 145 SALGLSGGQQQRVCIARVLA----TSPKIILLDEPTSALDPISAGKIEETLLGLK--DDYTMLLVTRSMQQASRISDRT 217 (252)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCccccCHHHHHHHHHHHHHHh--hCCeEEEEECCHHHHHHhCCEE
Confidence 35679999999999998776 4668999999999999999999999888875 4578999999874334444443
No 234
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.23 E-value=1.2e-06 Score=89.17 Aligned_cols=73 Identities=23% Similarity=0.243 Sum_probs=59.1
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++. .+..||++||+........+++
T Consensus 145 ~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tviivsH~~~~~~~~~d~i 217 (258)
T PRK14241 145 PGGGLSGGQQQRLCIARAIA----VEPDVLLMDEPCSALDPISTLAIEDLINELK--QDYTIVIVTHNMQQAARVSDQT 217 (258)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEE
Confidence 35679999999999987776 3568999999999999999999889898885 4678999999975444444443
No 235
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.23 E-value=1.2e-06 Score=88.15 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=58.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..|+ ...+++++|||+++||..++..+.+.|.++. ..+.-+|++||+........+++
T Consensus 134 ~~~LS~G~~qrv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~i 206 (240)
T PRK09493 134 PSELSGGQQQRVAIARALA----VKPKLMLFDEPTSALDPELRHEVLKVMQDLA-EEGMTMVIVTHEIGFAEKVASRL 206 (240)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEE
Confidence 3568999999999998776 3568999999999999999999889888875 34788999999985443444443
No 236
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=1.2e-06 Score=89.34 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=57.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..|+ .+.+++++|||+++||..++..+.+.|.++. .+.-+|++||+........+.
T Consensus 151 ~~~~LS~G~~qrl~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~~tiiivtH~~~~~~~~~d~ 222 (269)
T PRK14259 151 SGYSLSGGQQQRLCIARTIA----IEPEVILMDEPCSALDPISTLKIEETMHELK--KNFTIVIVTHNMQQAVRVSDM 222 (269)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCE
Confidence 35679999999999887766 3678999999999999999999999998875 467899999987433344444
No 237
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=1.3e-06 Score=89.32 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=58.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++. ..+.-+|++||+........+.
T Consensus 134 ~~~LSgG~~qrl~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~d~ 205 (271)
T PRK13638 134 IQCLSHGQKKRVAIAGALV----LQARYLLLDEPTAGLDPAGRTQMIAIIRRIV-AQGNHVIISSHDIDLIYEISDA 205 (271)
T ss_pred chhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 4679999999999988776 4678999999999999999999999998876 3467899999887533344444
No 238
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.23 E-value=0.015 Score=63.46 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001536 808 IKEAESQYRELELLRQ 823 (1058)
Q Consensus 808 ~~~~~~~~~~l~~~~~ 823 (1058)
+..+...+++..-+..
T Consensus 499 iefmkEeiQethldyR 514 (1265)
T KOG0976|consen 499 IEFMKEEIQETHLDYR 514 (1265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 239
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.23 E-value=0.0045 Score=66.51 Aligned_cols=16 Identities=6% Similarity=0.424 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 001536 261 QLKEQTLKIEKLKDRI 276 (1058)
Q Consensus 261 ~~~~~~~~~~~~~~~~ 276 (1058)
++..+..+++.+...+
T Consensus 114 ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 114 EITKLREELKELRKKL 129 (546)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3333333333333333
No 240
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=1.3e-06 Score=88.98 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=59.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ ...+++++|||+.+||..++..+.+.|.++....+..||++||+........+++
T Consensus 151 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMV----TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4578999999999987665 4568999999999999999999999998876333789999999975443444443
No 241
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.23 E-value=2.2e-06 Score=83.89 Aligned_cols=82 Identities=21% Similarity=0.122 Sum_probs=63.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhh----h--cCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHE----M--TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1043 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~----~--~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1043 (1058)
.+..|||||+.+++||..++..- . .+.++++||||+++||+..+..+...|.++. ..+.-+|++||+......
T Consensus 120 ~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~-~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 120 PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIR-TENRMVGVISHVEELKER 198 (213)
T ss_pred CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECchHHHHh
Confidence 35779999999999999998542 1 2456889999999999999888888888775 347789999998854555
Q ss_pred CCCCeeEEe
Q 001536 1044 QGERIKKQQ 1052 (1058)
Q Consensus 1044 ~~~~~~v~~ 1052 (1058)
+.+.+.|.+
T Consensus 199 ~~~~i~~~~ 207 (213)
T cd03279 199 IPQRLEVIK 207 (213)
T ss_pred hCcEEEEEe
Confidence 666666544
No 242
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.23 E-value=1.4e-06 Score=89.14 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=58.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..||+|+|.+++||..|+ ...+++|||||++|||+..+..+.+.|.+++...+.=||+.||.........+.+.
T Consensus 133 ~~~~lS~G~kqrl~ia~aL~----~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~ 208 (293)
T COG1131 133 KVRTLSGGMKQRLSIALALL----HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208 (293)
T ss_pred chhhcCHHHHHHHHHHHHHh----cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence 46779999999999997665 33489999999999999999999999999883223567777777654444444444
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
+
T Consensus 209 i 209 (293)
T COG1131 209 I 209 (293)
T ss_pred E
Confidence 3
No 243
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.3e-06 Score=89.03 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=58.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..|+. +.+++++|||+++||..++..+.+.|.++. .+.-||++||+........+.+
T Consensus 161 ~~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~l~--~~~tiiivtH~~~~~~~~~d~v 232 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAV----SPEVILMDEPCSALDPIATAKVEELIDELR--QNYTIVIVTHSMQQAARVSQRT 232 (267)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHh--cCCeEEEEEcCHHHHHhhCCEE
Confidence 56789999999999987763 668999999999999999999999998886 4678999999875443444443
No 244
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.3e-06 Score=88.93 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=60.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..|||||+++++||-.++ ...+++++|||+++||..++..+.+.|.++. .+..||++||+........+++-
T Consensus 148 ~~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tvi~vtH~~~~~~~~~d~v~ 221 (264)
T PRK14243 148 SGLSLSGGQQQRLCIARAIA----VQPEVILMDEPCSALDPISTLRIEELMHELK--EQYTIIIVTHNMQQAARVSDMTA 221 (264)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEE
Confidence 35579999999999998776 3567889999999999999999999998886 45789999999754455555544
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
+
T Consensus 222 ~ 222 (264)
T PRK14243 222 F 222 (264)
T ss_pred E
Confidence 3
No 245
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.22 E-value=1.8e-06 Score=83.35 Aligned_cols=84 Identities=27% Similarity=0.315 Sum_probs=69.4
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe-
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI- 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~- 1048 (1058)
-+++||||.++++.||=.|| ...+++++||+|++|||--|+.+-+.|+++-..-+.-++||||.-....+..++|
T Consensus 161 yp~eLSGGMqQRVGLARAla----~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 161 YPNELSGGMQQRVGLARALA----NDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred CcccccchHHHHHHHHHHHc----cCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE
Confidence 47889999999999997776 5678888999999999999999999999987666788999999976666666665
Q ss_pred -----eEEecCCCC
Q 001536 1049 -----KKQQMAAPR 1057 (1058)
Q Consensus 1049 -----~v~~~~~~~ 1057 (1058)
.|.+...|+
T Consensus 237 imkdG~ivQ~Gtp~ 250 (386)
T COG4175 237 IMKDGEIVQVGTPE 250 (386)
T ss_pred EecCCeEEEeCCHH
Confidence 455555553
No 246
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.1e-06 Score=93.30 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=59.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||-.|+ ...++++||||+++||...+..+.+.|.++....+.-+|++||+........+++
T Consensus 131 ~~~LSgGq~QRvaLAraL~----~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i 204 (369)
T PRK11000 131 PKALSGGQRQRVAIGRTLV----AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI 204 (369)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999998776 3568899999999999999999888888876434789999999975333444443
No 247
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.22 E-value=1.5e-06 Score=88.26 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=60.2
Q ss_pred CCccCCCCchhHHHHHHHHHh-h---h-hcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALAL-H---E-MTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQ 1044 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al-~---~-~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~ 1044 (1058)
.+..|||||+.+++||..|+. | + ..+.+++++|||+.+||..++..+.+.|.++....+.-+|++||+.......
T Consensus 142 ~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~ 221 (272)
T PRK13547 142 DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARH 221 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 356799999999999988874 1 1 1355788999999999999999999999887633368899999997533334
Q ss_pred CCC
Q 001536 1045 GER 1047 (1058)
Q Consensus 1045 ~~~ 1047 (1058)
.++
T Consensus 222 ~d~ 224 (272)
T PRK13547 222 ADR 224 (272)
T ss_pred CCE
Confidence 444
No 248
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.4e-06 Score=88.37 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=58.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..++. +.+++++|||+++||..++..+.+.|.++. .+..+|++||+......+.+++
T Consensus 145 ~~~~LS~Gq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~vsH~~~~~~~~~d~i 217 (252)
T PRK14255 145 SALSLSGGQQQRVCIARVLAV----KPDVILLDEPTSALDPISSTQIENMLLELR--DQYTIILVTHSMHQASRISDKT 217 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHH--hCCEEEEEECCHHHHHHhCCEE
Confidence 356799999999999877763 668999999999999999999889998886 4578999999975433444444
No 249
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.4e-06 Score=88.24 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=58.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..|+ .+.+++++|||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 147 ~~~LS~Gq~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiiisH~~~~~~~~~d~i 218 (251)
T PRK14244 147 AFELSGGQQQRLCIARAIA----VKPTMLLMDEPCSALDPVATNVIENLIQELK--KNFTIIVVTHSMKQAKKVSDRV 218 (251)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHhhcCEE
Confidence 4579999999999987776 3668999999999999999999888888875 5789999999975333444443
No 250
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=1.3e-06 Score=90.00 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=58.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..++. +.+++++|||+++||..++..+...|.++. ..+.-||++||+........+.
T Consensus 142 ~~~~LSgG~~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiiivsH~~~~~~~~~d~ 214 (280)
T PRK13649 142 NPFELSGGQMRRVAIAGILAM----EPKILVLDEPTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADF 214 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeccHHHHHHhCCE
Confidence 356799999999998877763 568999999999999999999999998876 3467899999987533333443
No 251
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.4e-06 Score=89.17 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=58.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ .+.+++++|||+++||+.++..+.+.|.++. ..+.-||++||+........+.+
T Consensus 140 ~~~LSgG~~qrv~laraL~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~-~~g~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 140 IGELSGGQKKRVFLARAIA----QQGQVILLDEPFTGVDVKTEARIISLLRELR-DEGKTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCCEE
Confidence 4569999999999998776 3678999999999999999999999998875 34778999999974333444443
No 252
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.5e-06 Score=88.82 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=59.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..|||||+.+++||..|+ ...+++++|||+++||..++..+.+.|.++. .+.-||++||+........+++-
T Consensus 158 ~~~~LSgGq~qrv~LAraL~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tiii~sH~~~~~~~~~d~i~ 231 (274)
T PRK14265 158 KGTALSGGQQQRLCIARAIA----MKPDVLLMDEPCSALDPISTRQVEELCLELK--EQYTIIMVTHNMQQASRVADWTA 231 (274)
T ss_pred CcccCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEE
Confidence 35678999999999987775 4678999999999999999999999998886 46789999999854444445443
No 253
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2e-06 Score=91.41 Aligned_cols=67 Identities=28% Similarity=0.355 Sum_probs=58.0
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1045 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1045 (1058)
.|||||+++++||=.| ..++|+++||||++++|.++...+.+.|.+++ ++.-+|+|||+...+..++
T Consensus 456 ~LSgGQ~QRlaLARAl----l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~--~~ktvl~itHrl~~~~~~D 522 (559)
T COG4988 456 GLSGGQAQRLALARAL----LSPASLLLLDEPTAHLDAETEQIILQALQELA--KQKTVLVITHRLEDAADAD 522 (559)
T ss_pred CCCHHHHHHHHHHHHh----cCCCCEEEecCCccCCCHhHHHHHHHHHHHHH--hCCeEEEEEcChHHHhcCC
Confidence 4899999999988544 35699999999999999999999999999998 7899999999986555444
No 254
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.4e-06 Score=88.93 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=58.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..++ .+.++++||||+++||..++..+.+.|.++. .+..||++||+........+++
T Consensus 164 ~~~~LSgGe~qrv~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 164 NAYGLSGGQQQRLCIARCLA----IEPDVILMDEPTSALDPISTLKVEELVQELK--KDYSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--cCCEEEEEEcCHHHHHHhCCEE
Confidence 35678999999999988776 3668999999999999999999999888876 4688999999875333444443
No 255
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.21 E-value=1.7e-06 Score=88.20 Aligned_cols=73 Identities=25% Similarity=0.227 Sum_probs=58.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+.+++||..|+. +.+++++|||+++||..++..+.+.|.++....+.-+|++||+........+.
T Consensus 149 ~~~LS~Ge~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~ 221 (268)
T PRK10419 149 PPQLSGGQLQRVCLARALAV----EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQR 221 (268)
T ss_pred CccCChHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCE
Confidence 45689999999999987773 56788999999999999999989999887633478999999997533333343
No 256
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.3e-06 Score=88.71 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=59.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..++ .+.+++++|||+++||..++..+.+.|.++. .+.-||++||+........+++
T Consensus 146 ~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~~~~~d~i 218 (253)
T PRK14267 146 YPSNLSGGQRQRLVIARALA----MKPKILLMDEPTANIDPVGTAKIEELLFELK--KEYTIVLVTHSPAQAARVSDYV 218 (253)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--hCCEEEEEECCHHHHHhhCCEE
Confidence 35679999999999987776 3668999999999999999999999999886 4688999999975444444443
No 257
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.21 E-value=1.5e-06 Score=90.74 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=60.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
++.||||++++++||..++. ..+++|+|||+++||..++..+++.|.++....+.-+|+|||+........+++
T Consensus 159 p~~LSgG~~QRv~IArAL~~----~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLC----RPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 46799999999999988763 558889999999999999999999999887444788999999975444445554
No 258
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.21 E-value=2.1e-06 Score=80.90 Aligned_cols=69 Identities=26% Similarity=0.331 Sum_probs=56.4
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
|||||+++++||..++ .+.+++++|||+++||...+..+.+.|.++. ..+.-+|++||+.... ...+++
T Consensus 97 LS~G~~qrv~la~al~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~~~~-~~~d~v 165 (173)
T cd03246 97 LSGGQRQRLGLARALY----GNPRILVLDEPNSHLDVEGERALNQAIAALK-AAGATRIVIAHRPETL-ASADRI 165 (173)
T ss_pred cCHHHHHHHHHHHHHh----cCCCEEEEECCccccCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHH-HhCCEE
Confidence 9999999999987776 4678999999999999999999889888875 3578899999987533 344433
No 259
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.20 E-value=1.4e-06 Score=87.48 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=56.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
.+..||||||++++||-.++ .+.+++++|||+++||..++..+.+.|.++. .+.-+|++||+....
T Consensus 135 ~~~~LSgG~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~ 200 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALI----HNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLSTV 200 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH
Confidence 35679999999999998776 3668999999999999999999999998876 578899999998544
No 260
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.20 E-value=1.3e-06 Score=92.52 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=59.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||-.|+ ...++++||||+++||..++..+...|.++....+.-+|++||+........+.+
T Consensus 129 ~~~LSgGqkqRvalAraL~----~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i 202 (354)
T TIGR02142 129 PGRLSGGEKQRVAIGRALL----SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRV 202 (354)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 4578999999999998776 3568899999999999999999999998886434678999999975443444443
No 261
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=2.1e-06 Score=82.43 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=53.8
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
.|||||+.+++||-.++. +.+++++|||+++||..++..+.+.|.++. ..+..+|++||+..
T Consensus 108 ~LSgGe~qrv~la~al~~----~p~vlllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiiivtH~~~ 169 (192)
T cd03232 108 GLSVEQRKRLTIGVELAA----KPSILFLDEPTSGLDSQAAYNIVRFLKKLA-DSGQAILCTIHQPS 169 (192)
T ss_pred cCCHHHhHHHHHHHHHhc----CCcEEEEeCCCcCCCHHHHHHHHHHHHHHH-HcCCEEEEEEcCCh
Confidence 799999999999877763 668999999999999999999999888876 34788999999974
No 262
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=1.6e-06 Score=86.67 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=56.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
+..|||||+.+++||-.++ ...+++++|||+++||...+..+.+.|.++. .+..+|++||+....
T Consensus 137 ~~~LS~G~~~rv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~ 201 (229)
T cd03254 137 GGNLSQGERQLLAIARAML----RDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLSTI 201 (229)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHH
Confidence 5679999999999998775 5678999999999999999999888888875 588999999998544
No 263
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.8e-06 Score=78.02 Aligned_cols=43 Identities=30% Similarity=0.340 Sum_probs=33.6
Q ss_pred EEEEEecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHHh
Q 001536 24 RVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1058)
Q Consensus 24 ~l~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 66 (1058)
++.+.|=+-.++..+++.|| +++|+|||||||||+|.+|+-=|
T Consensus 8 s~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 8 SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred EEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 34555544458888999886 88999999999999999987444
No 264
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=1.5e-06 Score=88.20 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=59.1
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..++ .+.++++||||+.+||..++..+...|.++. .+.-+|++||+........+++
T Consensus 144 ~~~~LS~Gq~qr~~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiiiisH~~~~~~~~~d~i 216 (251)
T PRK14251 144 NAQAFSGGQQQRICIARALA----VRPKVVLLDEPTSALDPISSSEIEETLMELK--HQYTFIMVTHNLQQAGRISDQT 216 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCCccCCHHHHHHHHHHHHHHH--cCCeEEEEECCHHHHHhhcCEE
Confidence 35679999999999987776 3678999999999999999999999998875 4678999999985434434443
No 265
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.20 E-value=1.8e-06 Score=86.71 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=57.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++. .+..||++||+..... ..+++
T Consensus 137 ~~~LS~G~~qrv~la~al~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v 207 (238)
T cd03249 137 GSQLSGGQKQRIAIARALL----RNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLI 207 (238)
T ss_pred CccCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEE
Confidence 4679999999999987776 4668999999999999999999888888875 6788999999975333 44443
No 266
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.6e-06 Score=88.63 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=58.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||++++++||..|+ .+.++++||||+++||...+..+.+.|.++. .+.-||++||+........+++
T Consensus 161 ~~~~LSgGq~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 161 SALSLSGGQQQRLCIARTLA----MKPAVLLLDEPASALDPISNAKIEELITELK--EEYSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred CcccCCHHHHHHHHHHHHHh----CCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCEEEEEEeCHHHHHHhCCEE
Confidence 35679999999999998776 3568999999999999999999888888875 4578999999975444444443
No 267
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.6e-06 Score=88.65 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=58.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||-.|+ ...+++++|||+.+||..++..+...|.++. ....||++||+........+++
T Consensus 160 ~~~~LSgGq~qrl~LAral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tiiivsH~~~~~~~~~dri 232 (276)
T PRK14271 160 SPFRLSGGQQQLLCLARTLA----VNPEVLLLDEPTSALDPTTTEKIEEFIRSLA--DRLTVIIVTHNLAQAARISDRA 232 (276)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999988776 3568999999999999999999889888876 4589999999985434444443
No 268
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=1.5e-06 Score=87.55 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=57.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..|+. +.+++++|||+++||..++..+...|.++. ..+.-+|++||+........+.
T Consensus 139 ~~~LS~G~~qrv~laral~~----~p~llilDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 139 PLHLSGGQQQRVAIARALMM----EPQVLLFDEPTAALDPEITAQIVSIIRELA-ETGITQVIVTHEVEVARKTASR 210 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCE
Confidence 35689999999999887764 568999999999999999998888888875 3478899999998543333333
No 269
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=1.8e-06 Score=81.19 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=53.3
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
|||||+.+++||..++ .+.+++++|||+++||...+..+.+.|.++. .+..+|++||+.....
T Consensus 97 LS~G~~~rl~la~al~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~~ 159 (171)
T cd03228 97 LSGGQRQRIAIARALL----RDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHRLSTIR 159 (171)
T ss_pred hCHHHHHHHHHHHHHh----cCCCEEEEECCCcCCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH
Confidence 9999999999987776 3568899999999999999988888888875 4688999999875443
No 270
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.6e-06 Score=87.79 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=59.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||-.++ ...+++++|||+.+||..++..+...|.++. .+..+|++||+........+++
T Consensus 145 ~~~~LS~G~~qrl~laral~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tiiivsH~~~~~~~~~d~i 217 (252)
T PRK14256 145 NAMELSGGQQQRLCIARTIA----VKPEVILMDEPASALDPISTLKIEELIEELK--EKYTIIIVTHNMQQAARVSDYT 217 (252)
T ss_pred CcCcCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCcEEEEECCHHHHHhhCCEE
Confidence 35679999999999987776 3558899999999999999999999998886 4679999999975433444544
No 271
>PRK13409 putative ATPase RIL; Provisional
Probab=98.19 E-value=1.5e-06 Score=98.37 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..|+ .+.++++||||+++||..++..+.+.|.+++...+.-+|++||+........+++
T Consensus 450 ~~~~LSGGe~QRvaiAraL~----~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrv 524 (590)
T PRK13409 450 NVKDLSGGELQRVAIAACLS----RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRL 524 (590)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 46679999999999997776 4678999999999999999999999999987444678999999875333444443
No 272
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.6e-06 Score=91.80 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=59.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||||++++||-.++ ...++++||||+++||...+..+.+.|.++....+.-+|++||+........+++
T Consensus 126 ~~~LSgGq~qRvalaraL~----~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i 199 (352)
T PRK11144 126 PGSLSGGEKQRVAIGRALL----TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRV 199 (352)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEE
Confidence 4579999999999998776 3568889999999999999999899988876434678999999975444444443
No 273
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.19 E-value=3e-06 Score=78.71 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=58.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||++.+++||-.++. ..+.+++++|||+.+||..++..+...|.++. ..+.-||++||+... ....+.
T Consensus 84 ~~~~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tvIivSH~~~~-~~~~d~ 157 (176)
T cd03238 84 KLSTLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLLEVIKGLI-DLGNTVILIEHNLDV-LSSADW 157 (176)
T ss_pred CcCcCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHH-HHhCCE
Confidence 457799999999998876652 22378999999999999999999888888875 357889999999753 344443
No 274
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.19 E-value=1.6e-06 Score=88.45 Aligned_cols=73 Identities=26% Similarity=0.308 Sum_probs=58.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||-.++ .+.+++++|||+++||...+..+.+.|.++....+.-||++||+........+.
T Consensus 148 ~~~LSgGe~qrv~laral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 148 PRQLSGGQLQRINIARALA----VKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcE
Confidence 4578999999999987776 366899999999999999999999999888643477899999987533333343
No 275
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.19 E-value=0.00026 Score=73.48 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=51.2
Q ss_pred ccCCCCchhHHHHHHHHHhhhhc----CCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMT----EAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1038 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~----~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1038 (1058)
+.||.||+..+|++|-+|=.... .--.+|+|+|-..||+..+-.+...+.... ....||||+||+.
T Consensus 528 n~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~-t~~kQviVLtHnt 597 (758)
T COG4694 528 NTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEK-TNIKQVIVLTHNT 597 (758)
T ss_pred ccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHH-hCceEEEEEeccc
Confidence 45899999999999887754333 234778999999999977666666666543 6889999999984
No 276
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.19 E-value=1.7e-06 Score=92.84 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=58.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..||||||++++||..|+. +.++++||||+++||+..+..++..|.++. ..+.-||++||+........++
T Consensus 141 ~~~LSGGQrQRVaLArAL~~----~P~LLLLDEPTsgLD~~sr~~LlelL~el~-~~G~TIIIVSHdl~~i~~l~Dr 212 (549)
T PRK13545 141 VKTYSSGMKSRLGFAISVHI----NPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTIFFISHSLSQVKSFCTK 212 (549)
T ss_pred cccCCHHHHHHHHHHHHHHh----CCCEEEEECCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCE
Confidence 46799999999999987773 578999999999999999999888888875 3577899999986433333444
No 277
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.4e-06 Score=91.29 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=59.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||++++++||..|+. ..+++|+|||+++||...+..++++|.++....+.-+|+|||+........+++
T Consensus 156 p~~LSgG~~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 156 PYELTEGECQKVMIAIALAN----QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred chhCCHHHHHHHHHHHHHHC----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 46799999999999887763 567889999999999999999999999886434789999999974333444444
No 278
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=3.1e-06 Score=86.51 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=58.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+...|.++....+.-+|++||+...... .+++
T Consensus 140 ~~~LS~G~~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i 212 (269)
T PRK13648 140 PNALSGGQKQRVAIAGVLA----LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHV 212 (269)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEE
Confidence 4568999999999887666 36789999999999999999999998888763347889999999754333 4443
No 279
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.7e-06 Score=87.69 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=58.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..++. ..+++++|||+++||..++..+.+.|.++. .+..+|++||+........+.+
T Consensus 146 ~~~~LS~G~~qrv~laral~~----~p~lllLDEP~~gLD~~~~~~l~~~l~~~~--~~~tvii~sh~~~~~~~~~d~v 218 (253)
T PRK14261 146 SALSLSGGQQQRLCIARTLAV----NPEVILMDEPCSALDPIATAKIEDLIEDLK--KEYTVIIVTHNMQQAARVSDYT 218 (253)
T ss_pred ChhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHh--hCceEEEEEcCHHHHHhhCCEE
Confidence 355799999999998877763 578999999999999999999888888876 4689999999974333334443
No 280
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.18 E-value=1.8e-06 Score=87.08 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=58.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ .+.++++||||+.+||...+..++..|.++. ..+..+|++||+........+++
T Consensus 141 ~~~LS~Gq~qrv~Laral~----~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~tiIiisH~~~~i~~~~d~i 213 (264)
T PRK13546 141 VKKYSSGMRAKLGFSINIT----VNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQVRQFCTKI 213 (264)
T ss_pred cccCCHHHHHHHHHHHHHh----hCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHcCEE
Confidence 4578999999999886665 4678999999999999999988888888875 45789999999975433444443
No 281
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.6e-06 Score=89.20 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=58.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||-.++. ..++++||||+.+||...+..+.+.|.++. .+..||++||+........+++
T Consensus 179 ~~~~LSgGq~qrv~LAraL~~----~p~lllLDEPt~gLD~~~~~~l~~~L~~~~--~~~tvIivsH~~~~~~~~~d~i 251 (286)
T PRK14275 179 NALGLSGGQQQRLCVARTLAV----EPEILLLDEPTSALDPKATAKIEDLIQELR--GSYTIMIVTHNMQQASRVSDYT 251 (286)
T ss_pred ChhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEE
Confidence 356799999999999877763 568999999999999999988888888876 4578999999875434444443
No 282
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=1.7e-06 Score=90.91 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=60.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.|+. ..++++||||+++||...+..+...|.++.+..+.-+|++||+........+++
T Consensus 134 ~~~LSgGq~QRVaLARaL~~----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i 207 (351)
T PRK11432 134 VDQISGGQQQRVALARALIL----KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTV 207 (351)
T ss_pred hhhCCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 45799999999999987763 567889999999999999998888888876445789999999986544555554
No 283
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.18 E-value=1.7e-06 Score=91.14 Aligned_cols=74 Identities=26% Similarity=0.220 Sum_probs=60.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.|+ ...+++++|||+++||...+..+.+.|.++....+.-+|++||+........+++
T Consensus 134 ~~~LSgGq~QRvalArAL~----~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri 207 (353)
T PRK10851 134 PAQLSGGQKQRVALARALA----VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRV 207 (353)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4679999999999997775 3568889999999999999999999988886444789999999985444445544
No 284
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.18 E-value=2.3e-06 Score=82.32 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=53.6
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
.|||||+.+++||..++ .+.+++++|||+.+||...+..+...|.++. ..+..+|++||+..
T Consensus 111 ~LS~G~~qrv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELV----SNPSLLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCch
Confidence 69999999999887776 3668999999999999999999888888875 34789999999873
No 285
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.18 E-value=1.8e-06 Score=87.21 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=55.5
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1043 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1043 (1058)
.||||||++++||..++ .+.+++++|||+++||..++..+.+.|.++. ..+.-||++||+......
T Consensus 144 ~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 144 GFSGGEKKRNEILQMAL----LEPKLAILDEIDSGLDIDALKIVAEGINRLR-EPDRSFLIITHYQRLLNY 209 (243)
T ss_pred CcCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHH-HCCcEEEEEEecHHHHHh
Confidence 48999999999998776 3678999999999999999999999998875 356789999998753333
No 286
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.18 E-value=2.4e-06 Score=84.91 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=59.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC-CCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV-GLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~-~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..++. +.+++++|||+++||..++..+.+.|.++. ..+.-+|++||+.. ......+++
T Consensus 140 ~~~~LS~G~~qrl~laral~~----~p~illlDEP~~gLD~~~~~~~~~~l~~~~-~~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 140 LVKGISGGERRRVSIAVQLLW----DPKVLILDEPTSGLDSFTALNLVSTLSQLA-RRNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred cccCcCHHHHHHHHHHHHHHh----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHhCCEE
Confidence 356799999999999987764 568999999999999999999888888875 34778999999862 344555544
Q ss_pred e
Q 001536 1049 K 1049 (1058)
Q Consensus 1049 ~ 1049 (1058)
.
T Consensus 215 ~ 215 (226)
T cd03234 215 L 215 (226)
T ss_pred E
Confidence 3
No 287
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=1.9e-06 Score=88.11 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=59.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||++++++||-.|+ ...+++++|||+++||+.++..+...|.++.. .+.-||++||+........+++
T Consensus 136 ~~~LSgG~~qrv~laraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~~~~~~~d~i 208 (274)
T PRK13647 136 PYHLSYGQKKRVAIAGVLA----MDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVDLAAEWADQV 208 (274)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999997776 35688999999999999999999999988863 4789999999975333455554
No 288
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=2.3e-06 Score=85.77 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=56.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
+..|||||+++++||..|+ .+.+++++|||+.+||..++..+.+.|.++. .+..+|++||+.....
T Consensus 136 ~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~~ 201 (234)
T cd03251 136 GVKLSGGQRQRIAIARALL----KDPPILILDEATSALDTESERLVQAALERLM--KNRTTFVIAHRLSTIE 201 (234)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHh
Confidence 5678999999999998777 3567999999999999999999888888876 5789999999985443
No 289
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.18 E-value=1.7e-06 Score=86.07 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=55.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||...+..+.+.|.++. .+..+|++||+....
T Consensus 148 ~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~ 212 (226)
T cd03248 148 GSQLSGGQKQRVAIARALI----RNPQVLILDEATSALDAESEQQVQQALYDWP--ERRTVLVIAHRLSTV 212 (226)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEECCHHHH
Confidence 5679999999999987775 4668999999999999999998888888876 468899999997543
No 290
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.18 E-value=1.7e-06 Score=91.08 Aligned_cols=74 Identities=24% Similarity=0.231 Sum_probs=60.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.|+. ..++++||||+++||...+..+...|.++.+..+.-+|++||+........+++
T Consensus 132 ~~~LSgGq~QRvaLARaL~~----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i 205 (353)
T TIGR03265 132 PGQLSGGQQQRVALARALAT----SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRI 205 (353)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 45799999999999987773 567889999999999999999888888876445789999999986444445554
No 291
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.9e-06 Score=87.30 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=57.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ ...+++++|||+++||..++..+.+.|.++. .+..||++||+........+++
T Consensus 143 ~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~~~~~d~i 214 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIA----MEPDVILMDEPTSALDPIATHKIEELMEELK--KNYTIVIVTHSMQQARRISDRT 214 (249)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCCEE
Confidence 5679999999999988776 3568899999999999999999889888876 4588999999875334334443
No 292
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=2.2e-06 Score=87.82 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=59.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.|+ ...+++++|||+++||..++..++..|.++....+..+|++||+.... ...+++
T Consensus 138 ~~~LSgGq~qrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri 210 (279)
T PRK13650 138 PARLSGGQKQRVAIAGAVA----MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRV 210 (279)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEE
Confidence 3579999999999987776 356889999999999999999999999888643478999999997544 334443
No 293
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.18 E-value=1.8e-06 Score=91.02 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=60.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcC-CcEEEEEccCCCCCCCCCCCee
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQ-GSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~-~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
+..||||||++++||-.|+ ...++++||||+++||...+..+...|.++.... +.-+|++||+........+++.
T Consensus 135 ~~~LSgGq~QRvaLARAL~----~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~ 210 (362)
T TIGR03258 135 PAQLSGGMQQRIAIARAIA----IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAG 210 (362)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEE
Confidence 4679999999999998776 3677888999999999999999888888876433 6899999999854444455543
No 294
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=2e-06 Score=88.59 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=58.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||+|++++||-.|+. ..+++++|||+++||..++..+...|.++. ..+.-||++||+........++
T Consensus 142 ~~~~LSgGq~qrl~laral~~----~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-~~g~tvlivsH~~~~~~~~~d~ 214 (287)
T PRK13641 142 SPFELSGGQMRRVAIAGVMAY----EPEILCLDEPAAGLDPEGRKEMMQLFKDYQ-KAGHTVILVTHNMDDVAEYADD 214 (287)
T ss_pred CcccCCHHHHHHHHHHHHHHc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCCE
Confidence 356799999999999987774 458999999999999999999888888875 3578999999987533344444
No 295
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.17 E-value=2e-06 Score=83.22 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=58.5
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCC-CCCCe
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK-QGERI 1048 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~-~~~~~ 1048 (1058)
..|||||+++++||..++ .+.|++++|||+.+||..++..+.+.|.++. ..+..+|++||+...... ..+++
T Consensus 103 ~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~L~~~~-~~~~tiii~sh~~~~~~~~~~d~i 175 (200)
T cd03217 103 EGFSGGEKKRNEILQLLL----LEPDLAILDEPDSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQRLLDYIKPDRV 175 (200)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhhCCEE
Confidence 579999999999988776 3678999999999999999999999998876 347889999998753333 34443
No 296
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.17 E-value=1.7e-06 Score=90.47 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=60.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeE
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1050 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1050 (1058)
+..||||+|++++||..|+. ..++++||||++|||+.++..+.+.|.++. ..+.-||++||+........+++.+
T Consensus 170 ~~~LS~G~kqrv~lA~aL~~----~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~-~~g~tilisSH~l~e~~~~~d~i~i 244 (340)
T PRK13536 170 VSDLSGGMKRRLTLARALIN----DPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCV 244 (340)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCEEEE
Confidence 46799999999999887763 568889999999999999999999999886 3578899999887544455555533
No 297
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1.9e-06 Score=87.52 Aligned_cols=73 Identities=25% Similarity=0.274 Sum_probs=58.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+.+++||..++. ..+++++|||+++||..++..+...|.++. .+..+|++||+........+++
T Consensus 145 ~~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~~~~~d~i 217 (252)
T PRK14272 145 PATGLSGGQQQRLCIARALAV----EPEILLMDEPTSALDPASTARIEDLMTDLK--KVTTIIIVTHNMHQAARVSDTT 217 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEE
Confidence 356799999999999977663 568999999999999999999889888875 4688999999875333344443
No 298
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.17 E-value=2e-06 Score=86.50 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=59.2
Q ss_pred CccCCCCchhHHHHHHHHHhh---hhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALH---EMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~---~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..++.. ...+.+++++|||+.+||..++..+.+.|.++. ..+.-||++||+........+.
T Consensus 124 ~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~-~~~~tvi~~sH~~~~~~~~~d~ 202 (248)
T PRK03695 124 VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC-QQGIAVVMSSHDLNHTLRHADR 202 (248)
T ss_pred cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHhCCE
Confidence 467899999999999887731 012457999999999999999999888888876 3577899999997534444444
Q ss_pred e
Q 001536 1048 I 1048 (1058)
Q Consensus 1048 ~ 1048 (1058)
+
T Consensus 203 i 203 (248)
T PRK03695 203 V 203 (248)
T ss_pred E
Confidence 3
No 299
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=2e-06 Score=87.13 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=60.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..|||||+.+++||..|+ .+.+++++|||+++||..++..+.+.|.++. .+..+|++||+........+++-
T Consensus 146 ~~~~LS~G~~qrv~laral~----~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~~~d~v~ 219 (261)
T PRK14263 146 SGLSLSGGQQQRLCIARAIA----TEPEVLLLDEPCSALDPIATRRVEELMVELK--KDYTIALVTHNMQQAIRVADTTA 219 (261)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEEE
Confidence 35579999999999887775 4678999999999999999999999998875 56889999999754444445543
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
+
T Consensus 220 ~ 220 (261)
T PRK14263 220 F 220 (261)
T ss_pred E
Confidence 3
No 300
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=2e-06 Score=88.43 Aligned_cols=75 Identities=19% Similarity=0.118 Sum_probs=59.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||++++++||-.++ ...|++|+|||+++||..++..+...|.++.+..+.-||++||+........+++
T Consensus 138 ~~~~LS~G~~qrl~laraL~----~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri 212 (283)
T PRK13636 138 PTHCLSFGQKKRVAIAGVLV----MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNV 212 (283)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 35679999999999987775 3668999999999999999999899998886434788999999875333344444
No 301
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.17 E-value=2.7e-06 Score=83.42 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=54.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
+..|||||+.+++||..|+ .+.+++++|||+++||...+..+.+.|.++. ..+.-+|++||+..
T Consensus 132 ~~~lS~G~~qr~~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~~ 195 (206)
T TIGR03608 132 IYELSGGEQQRVALARAIL----KDPPLILADEPTGSLDPKNRDEVLDLLLELN-DEGKTIIIVTHDPE 195 (206)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHH
Confidence 4568999999999987776 3668999999999999999999999888876 34788999999874
No 302
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.17 E-value=4.6e-06 Score=78.07 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=59.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHh-cCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFAL-AQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~-~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+...||.|||.++-||=.+ +...+++|||||++|||..+|...++.|.+.+. ....++|+||||....-.+.+++
T Consensus 168 ~~~~LS~Ge~rrvLiaRAL----v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ 243 (257)
T COG1119 168 PFGSLSQGEQRRVLIARAL----VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHR 243 (257)
T ss_pred chhhcCHhHHHHHHHHHHH----hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceE
Confidence 5788999999987766433 345568889999999999999999999998875 34799999999986555555443
No 303
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.17 E-value=2.3e-06 Score=86.85 Aligned_cols=73 Identities=23% Similarity=0.198 Sum_probs=58.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. ..+++++|||+++||..++..+.+.|.++. ..+.-+|++||+........+.+
T Consensus 135 ~~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 135 MSTLSGGERQRVHVARALAQ----EPKLLLLDEPTNHLDVRAQLETLALVRELA-ATGVTVVAALHDLNLAASYCDHV 207 (256)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCccccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEE
Confidence 45689999999999987764 568999999999999999999888888875 34678999999875443444443
No 304
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=3.2e-06 Score=86.78 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=58.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..|+ ...+++++|||+++||..++..+...|.++....+.-||++||+...... .+++
T Consensus 142 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v 214 (280)
T PRK13633 142 PHLLSGGQKQRVAIAGILA----MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRI 214 (280)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEE
Confidence 4679999999999887775 45688899999999999999999988888763347899999999854433 4443
No 305
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=2.5e-06 Score=87.49 Aligned_cols=74 Identities=26% Similarity=0.241 Sum_probs=59.0
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||++.+++||..|+. ..+++|+|||+++||..++..+.+.|.++....+.-||++||+........+++
T Consensus 135 ~~~LS~Gq~qrl~laraL~~----~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv 208 (277)
T PRK13652 135 PHHLSGGEKKRVAIAGVIAM----EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYI 208 (277)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 45789999999999877763 568899999999999999999888888876333788999999975433444544
No 306
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.16 E-value=0.0091 Score=58.32 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 877 LRMLYEEKEHKILRKQQTYQAFREKVRACR 906 (1058)
Q Consensus 877 ~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~ 906 (1058)
.....+.+...+..+...+..+...|..+.
T Consensus 219 ~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 219 LSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555444443
No 307
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=2.3e-06 Score=86.69 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=59.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||..++ ...+++++|||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 144 ~~~LS~Gq~qrv~laral~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~~~~~~~i 215 (250)
T PRK14266 144 ALGLSGGQQQRLCIARTIA----VSPEVILMDEPCSALDPISTTKIEDLIHKLK--EDYTIVIVTHNMQQATRVSKYT 215 (250)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHHhhcCEE
Confidence 5678999999999998777 3568999999999999999999888888875 5789999999986555555544
No 308
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.16 E-value=2.2e-06 Score=87.32 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=58.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||-.++. +.+++++|||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 160 ~~~~LS~G~~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiii~tH~~~~~~~~~d~i 232 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAV----KPDILLMDEPASALDPISTMQLEETMFELK--KNYTIIIVTHNMQQAARASDYT 232 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCEE
Confidence 356799999999998877763 567889999999999999999889888875 5689999999875444444443
No 309
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=2.1e-06 Score=86.36 Aligned_cols=72 Identities=25% Similarity=0.193 Sum_probs=57.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||...+..+.+.|..+. ..+.-+|++||+........++
T Consensus 135 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiii~sH~~~~~~~~~d~ 206 (241)
T PRK10895 135 GQSLSGGERRRVEIARALA----ANPKFILLDEPFAGVDPISVIDIKRIIEHLR-DSGLGVLITDHNVRETLAVCER 206 (241)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhcCE
Confidence 4678999999999988776 3668999999999999999888888887765 3578899999987433333343
No 310
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.15 E-value=2.1e-06 Score=90.44 Aligned_cols=74 Identities=28% Similarity=0.300 Sum_probs=60.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||++++++||-.|+ ...++++||||+++||+..+..+.+.|.++....+.-+|++||+........+++
T Consensus 162 ~~~LSgGq~QRV~LARALa----~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI 235 (382)
T TIGR03415 162 PGELSGGMQQRVGLARAFA----MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRI 235 (382)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4568999999999998887 4668889999999999999999999999886334789999999975444555554
No 311
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=2.3e-06 Score=87.83 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=57.3
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..||||||++++||..++ ...++++||||+++||..++..+.+.|.++. .+.-||++||+........++
T Consensus 178 ~~~LSgGe~qrv~LAraL~----~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~--~~~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 178 GLDLSGGQQQRLCIARAIA----PDPEVILMDEPASALDPVATSKIEDLIEELA--EEYTVVIVTHNMQQAARISDK 248 (285)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCE
Confidence 4568999999999987775 4668999999999999999999999888886 346899999987533344444
No 312
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=4e-06 Score=85.72 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=55.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
+..|||||+++++||-.|+ .+.+++++|||+++||..++..+++.|.++....+.-+|++||+....
T Consensus 140 ~~~LS~G~~qrl~laral~----~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 140 PQNLSGGQKQRVAIASVLA----LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA 206 (271)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH
Confidence 3579999999999887766 467899999999999999999999999887632247899999997533
No 313
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=2.2e-06 Score=87.68 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=58.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+...|.++.. .+.-||++||+........+++
T Consensus 135 ~~~LS~Gq~qrv~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~~~~~~~~d~i 207 (275)
T PRK13639 135 PHHLSGGQKKRVAIAGILA----MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKV 207 (275)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEE
Confidence 4579999999999887775 36789999999999999999999999988863 4788999999975333344443
No 314
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=2.3e-06 Score=85.36 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=57.8
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
..|||||+.+++||..++ ...+++++|||+++||..++..+.+.|.++....+..+|++||+........++
T Consensus 129 ~~lS~G~~qrl~laral~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 129 SQLSGGQQQRVAIARALV----NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 568999999999987776 367899999999999999999888888887633378999999998533333344
No 315
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.15 E-value=2.8e-06 Score=83.81 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=59.4
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcC-CCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTE-APFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~-~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||++++++||-.++. .| .+++++|||+++||...+..+.+.|.++. ..+.-+|++||+... ....+++
T Consensus 134 ~~~~LSgG~~qrv~laral~~---~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~-~~g~tii~itH~~~~-~~~~d~i 208 (226)
T cd03270 134 SAPTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR-DLGNTVLVVEHDEDT-IRAADHV 208 (226)
T ss_pred ccCcCCHHHHHHHHHHHHHHh---CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEEeCHHH-HHhCCEE
Confidence 356789999999999987772 23 25999999999999999999999988875 457789999999853 3455444
Q ss_pred eE
Q 001536 1049 KK 1050 (1058)
Q Consensus 1049 ~v 1050 (1058)
.+
T Consensus 209 ~~ 210 (226)
T cd03270 209 ID 210 (226)
T ss_pred EE
Confidence 33
No 316
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.14 E-value=2.4e-06 Score=87.33 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=58.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+.+++||..++ .+.+++++|||+.+||..++..+.+.|.++. .+..+|++||+........++
T Consensus 166 ~~~LS~Gq~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~--~~~tiiivtH~~~~~~~~~d~ 236 (272)
T PRK14236 166 AFGLSGGQQQRLVIARAIA----IEPEVLLLDEPTSALDPISTLKIEELITELK--SKYTIVIVTHNMQQAARVSDY 236 (272)
T ss_pred cccCCHHHHHHHHHHHHHH----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCeEEEEeCCHHHHHhhCCE
Confidence 4578999999999998776 4678899999999999999999999998886 467899999997543444444
No 317
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=2.6e-06 Score=86.29 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||+++++||..|+ ...+++++|||+++||..++..+.+.|.++. .+.-||++||+........+++
T Consensus 144 ~~~~LS~Gq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~~~~~~~~d~i 216 (251)
T PRK14249 144 SGLALSGGQQQRLCIARVLA----IEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNMQQAARASDWT 216 (251)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhCCEE
Confidence 45679999999999998776 3568999999999999999988888888874 5789999999875444444544
No 318
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.14 E-value=2.3e-06 Score=97.25 Aligned_cols=75 Identities=25% Similarity=0.264 Sum_probs=60.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..|+ ...+++++|||+++||+..+..+.+.|.++....+.-||++||+........+++
T Consensus 153 ~~~~LSgGe~qrv~iAraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri 227 (529)
T PRK15134 153 YPHQLSGGERQRVMIAMALL----TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRV 227 (529)
T ss_pred CCcccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEE
Confidence 45679999999999998876 4678999999999999999999999998876434678999999975444444443
No 319
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.14 E-value=3.5e-06 Score=72.81 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=54.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCC-eeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAP-FRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1040 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p-~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1040 (1058)
.+..|||||++++||+=-| +-.| ++++||++++||..|.+.+-++|.++.+.++.=++-|||.+.-
T Consensus 130 ~it~lSGGE~QriAliR~L-----q~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 130 NITELSGGEKQRIALIRNL-----QFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred hhhhccchHHHHHHHHHHh-----hcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH
Confidence 3567999999999887322 2234 5569999999999999999999999987788899999999854
No 320
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.14 E-value=2.4e-06 Score=91.24 Aligned_cols=77 Identities=26% Similarity=0.274 Sum_probs=64.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
-++.||||+|+++.||..+| ....++|+|||+++||......++++|.++.+..+.=+|+|||.........+++.
T Consensus 151 yPheLSGG~rQRv~iAmALa----~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~ 226 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALA----LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226 (539)
T ss_pred CCcccCchHHHHHHHHHHHh----CCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEE
Confidence 36789999999999988776 33447789999999999999999999999887889999999999865666666654
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
|
T Consensus 227 V 227 (539)
T COG1123 227 V 227 (539)
T ss_pred E
Confidence 4
No 321
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.14 E-value=2.2e-06 Score=88.76 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=58.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||+|++++||..|+ ...++++||||++|||+.++..+.+.|.++. ..+.-||++||+........+++
T Consensus 136 ~~~LS~G~~qrl~la~aL~----~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~till~sH~l~e~~~~~d~i 208 (306)
T PRK13537 136 VGELSGGMKRRLTLARALV----NDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFMEEAERLCDRL 208 (306)
T ss_pred hhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCEE
Confidence 4579999999999987775 3567889999999999999999999998875 35788999998875444444444
No 322
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.14 E-value=3e-06 Score=82.97 Aligned_cols=64 Identities=20% Similarity=0.150 Sum_probs=55.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1040 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1040 (1058)
+..|||||+.+++||-.++ ...+++++|||+++||...+..+.+.|.++. .+.-+|++||+...
T Consensus 123 ~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~~ 186 (207)
T cd03369 123 GLNLSQGQRQLLCLARALL----KRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLRT 186 (207)
T ss_pred CCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHH
Confidence 5679999999999988775 4678999999999999999988888888875 57899999999753
No 323
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=2.5e-06 Score=86.67 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=59.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..|||||+.+++||..|+ ...++++||||+++||..++..+.+.|.++. .+.-+|++||+........+++-
T Consensus 147 ~~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiii~tH~~~~i~~~~d~i~ 220 (259)
T PRK14260 147 SALGLSGGQQQRLCIARALA----IKPKVLLMDEPCSALDPIATMKVEELIHSLR--SELTIAIVTHNMQQATRVSDFTA 220 (259)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCeEE
Confidence 35679999999999887775 4668999999999999999999889998876 45789999998754444445443
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
+
T Consensus 221 ~ 221 (259)
T PRK14260 221 F 221 (259)
T ss_pred E
Confidence 3
No 324
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.14 E-value=3.8e-06 Score=83.52 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=54.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
+..|||||+++++||..++ ...++++||||+.+||...+..+.+.|.++. ..+.-||++||+..
T Consensus 147 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vsH~~~ 210 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFI----ADYPILLLDEPTASLDAANRQVVVELIAEAK-ARGAALIGIFHDEE 210 (224)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHH
Confidence 5578999999999987776 3568999999999999999999889888875 35788999999964
No 325
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.13 E-value=3.5e-06 Score=78.32 Aligned_cols=76 Identities=26% Similarity=0.270 Sum_probs=60.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeE
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1050 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1050 (1058)
+++||||.+-++|||=.+|+- .+++++|||++|+|+.....+.+++.++-++-+.-+|+|||+-.+.....+++-|
T Consensus 143 PsELSGGM~KRvaLARAiald----Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~ 218 (263)
T COG1127 143 PSELSGGMRKRVALARAIALD----PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAV 218 (263)
T ss_pred chhhcchHHHHHHHHHHHhcC----CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEE
Confidence 567999999999999888853 3778899999999998766655555565446789999999998877777666533
No 326
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.13 E-value=3.8e-06 Score=79.65 Aligned_cols=65 Identities=32% Similarity=0.455 Sum_probs=55.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||...+..+++.|.++. .+.-+|++||+....
T Consensus 96 ~~~LS~G~~qrv~laral~----~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~ 160 (178)
T cd03247 96 GRRFSGGERQRLALARILL----QDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLTGI 160 (178)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH
Confidence 5679999999999988776 4568999999999999999988888888875 578899999987533
No 327
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.13 E-value=2.8e-06 Score=84.34 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=54.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1040 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1040 (1058)
+..|||||+++++||-.++ .+.+++++|||+++||..++..+.+.|.++. .+..+|++||+...
T Consensus 137 ~~~LS~G~~qr~~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~ 200 (221)
T cd03244 137 GENLSVGQRQLLCLARALL----RKSKILVLDEATASVDPETDALIQKTIREAF--KDCTVLTIAHRLDT 200 (221)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHH
Confidence 5679999999999998776 4668899999999999999998888888875 56889999999743
No 328
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=2.5e-06 Score=90.42 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=59.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+++++||-.|+. ..++++||||+++||...+..+...|.++.+..+.-+|++||.........+++
T Consensus 147 ~~~LSgGq~QRVaLARAL~~----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri 220 (377)
T PRK11607 147 PHQLSGGQRQRVALARSLAK----RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220 (377)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 45799999999999987763 557888999999999999888888888876555789999999986444445544
No 329
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.12 E-value=3.2e-06 Score=95.24 Aligned_cols=73 Identities=22% Similarity=0.179 Sum_probs=59.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..|+ ...+++++|||+++||+.++..+.+.|.++. ..+.-||++||+........+.
T Consensus 132 ~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFKYLSTGETRKTLLCQALM----SEPDLLILDEPFDGLDVASRQQLAELLASLH-QSGITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCE
Confidence 45679999999999998876 3678999999999999999999999998886 3467899999987433344443
No 330
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.12 E-value=4.6e-06 Score=80.51 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=52.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||...+..+.+.|.... ..+.-+|++||+..
T Consensus 121 ~~~LS~G~~~rl~la~al~----~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~ 184 (195)
T PRK13541 121 CYSLSSGMQKIVAIARLIA----CQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLES 184 (195)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCcc
Confidence 4568999999999887776 3678999999999999999888888876544 35678999998874
No 331
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=3.1e-06 Score=86.93 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=59.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||-.++. ..+++++|||+++||..++..+.+.|.++....+..||++||+.... ...+++
T Consensus 141 ~~~LS~G~~qrv~laral~~----~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i 213 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAV----EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQV 213 (282)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEE
Confidence 45799999999999877763 66899999999999999999999999888643478999999997543 334443
No 332
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.12 E-value=4e-06 Score=89.68 Aligned_cols=77 Identities=26% Similarity=0.299 Sum_probs=63.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
-+++||||||++++||-.||+ ..-++|+||+++.||......++++|.++-..-+.=||||||+-.......+++.
T Consensus 426 yP~elSGGQrQRvaIARALa~----~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~ 501 (539)
T COG1123 426 YPHELSGGQRQRVAIARALAL----EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVA 501 (539)
T ss_pred CchhcCcchhHHHHHHHHHhc----CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEE
Confidence 357799999999999988884 3447789999999999999999999999876778999999998754555555554
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
|
T Consensus 502 v 502 (539)
T COG1123 502 V 502 (539)
T ss_pred E
Confidence 4
No 333
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.11 E-value=2.8e-06 Score=96.05 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..++ .+.+++++|||+++||..++..+.+.|..+. ..+.-||++||+........+++
T Consensus 400 ~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviivsHd~~~~~~~~d~v 473 (500)
T TIGR02633 400 PIGRLSGGNQQKAVLAKMLL----TNPRVLILDEPTRGVDVGAKYEIYKLINQLA-QEGVAIIVVSSELAEVLGLSDRV 473 (500)
T ss_pred ccccCCHHHHHHHHHHHHHh----hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCEE
Confidence 35679999999999998877 3578999999999999999999888888876 35778999999875444444443
No 334
>PRK11637 AmiB activator; Provisional
Probab=98.11 E-value=0.003 Score=69.32 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 262 LKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMV 308 (1058)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1058)
+.....++..+..++..+...+.....++..++.++..++.++..++
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 335
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.11 E-value=2.6e-06 Score=96.74 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=60.4
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..|+ ...+++++|||+++||..++..+.+.|.++....+.-||++||+........+.+
T Consensus 422 ~~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 422 YPAEFSGGQRQRIAIARALI----LKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred CCccCCHHHHHHHHHHHHHh----CCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 35679999999999998876 4678999999999999999999999999886434678999999875444444443
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.11 E-value=3.6e-06 Score=94.81 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCC-CCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK-QGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~-~~~~~ 1048 (1058)
.+..||||||++++||..++ ...+++++|||++|||..++..+.+.|.++....+..||++||+...... +.+.+
T Consensus 398 ~~~~LSgGq~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v 473 (490)
T PRK10938 398 PFHSLSWGQQRLALIVRALV----KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRL 473 (490)
T ss_pred chhhCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeE
Confidence 35679999999999997776 46789999999999999999999999999863323569999999754433 24444
No 337
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.11 E-value=3.2e-06 Score=95.94 Aligned_cols=74 Identities=23% Similarity=0.229 Sum_probs=60.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..|+ ...+++++|||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 165 ~~~~LSgGq~qrv~iA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 165 IARDLSGGEKQRVVLARQLA----KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 35679999999999998876 467799999999999999999999999988644467899999997544343343
No 338
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=6.8e-05 Score=79.28 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=56.6
Q ss_pred ccCCCCchhHHHHHHHHHhhhh-----cCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC--CCC
Q 001536 972 RGLSGGERSFSTLCFALALHEM-----TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL--VKQ 1044 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~-----~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~--~~~ 1044 (1058)
..+|+||+..++||+.+|.... ...|+++||||+++||..++..+++.|.. .+.|||+.||+.... ...
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~----~~~qv~it~~~~~~~~~~~~ 349 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQS----LGVQVFVTAISLDHLKEMWD 349 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhh----cCCEEEEEecChhhccchhc
Confidence 4579999999999999986432 35789899999999999987665555543 357999999886322 223
Q ss_pred CCCeeEEec
Q 001536 1045 GERIKKQQM 1053 (1058)
Q Consensus 1045 ~~~~~v~~~ 1053 (1058)
...+.|..+
T Consensus 350 ~~~~~~~~~ 358 (365)
T TIGR00611 350 PNRVTIALV 358 (365)
T ss_pred ccceEEEEE
Confidence 344455554
No 339
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.10 E-value=4.3e-06 Score=77.92 Aligned_cols=69 Identities=25% Similarity=0.205 Sum_probs=54.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
....|||||+.+++||-.++ .+.+++++|||+++||..++..+.+.|.++ +.-+|++||+.. .....++
T Consensus 88 ~~~~LS~G~~~rv~laral~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~-~~~~~d~ 156 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLL----HKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS-LWKFHDR 156 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHH----cCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh-HHhhCCE
Confidence 35779999999999987775 467899999999999999988877777664 467999999974 3344443
No 340
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.10 E-value=3.4e-06 Score=95.07 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=59.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..++ .+.++++||||+++||..++..+.+.|.++. ..+.-||++||+........++
T Consensus 400 ~~~~LSgG~kqrl~la~al~----~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-~~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 400 AARTLSGGNQQKVLIAKCLE----ASPQLLIVDEPTRGVDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred ccccCCcHHHHHHHHHHHHh----hCCCEEEECCCCcCcChhHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCE
Confidence 35679999999999998776 3678999999999999999999999988886 3577899999997544444444
No 341
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.10 E-value=3.5e-06 Score=84.32 Aligned_cols=73 Identities=27% Similarity=0.228 Sum_probs=58.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..|+. +.+++++|||+.+||..++..+.+.|.++....+..+|++||+........++
T Consensus 128 ~~~lS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 128 PNQLSGGQRQRVALARALAV----EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 35689999999999987763 56899999999999999999999988887632378999999988543444444
No 342
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=3.4e-06 Score=86.13 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=58.2
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||++.+++||..++. ..+++++|||+.+||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 159 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~tiiivth~~~~~~~~~d~i 230 (265)
T PRK14252 159 AFNLSGGQQQRLCIARALAT----DPEILLFDEPTSALDPIATASIEELISDLK--NKVTILIVTHNMQQAARVSDYT 230 (265)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHHhCCEE
Confidence 45789999999998877763 678999999999999999999889888876 4688999999875433444444
No 343
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.09 E-value=3.3e-06 Score=95.56 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..|+ .+.++++||||+++||..++..+.+.|.++. ..+.-||++||+........++
T Consensus 406 ~~~~LSgGq~qrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 406 NITELSGGNQQKVLISKWLC----CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSELPEIITVCDR 478 (510)
T ss_pred ccccCChHHHHHHHHHHHHh----cCCCEEEECCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHhhCCE
Confidence 35679999999999998776 3578999999999999999999999988876 3577799999997544444444
No 344
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.09 E-value=3.1e-06 Score=95.45 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=60.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..++ .+.++++||||+++||..++..+.+.|.++. ..+.-||++||+........+.+
T Consensus 392 ~~~~LSgGekqrv~lA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tviivtHd~~~~~~~~d~v 465 (501)
T PRK10762 392 AIGLLSGGNQQKVAIARGLM----TRPKVLILDEPTRGVDVGAKKEIYQLINQFK-AEGLSIILVSSEMPEVLGMSDRI 465 (501)
T ss_pred chhhCCHHHHHHHHHHHHHh----hCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHhhCCEE
Confidence 35679999999999998776 3678999999999999999999999999886 35778999999865444444443
No 345
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.09 E-value=5.3e-06 Score=82.32 Aligned_cols=67 Identities=22% Similarity=0.185 Sum_probs=55.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
+..|||||+++++||..|+.. ..+.++++||||+++||...+..+.+.|.++. ..+.-+|++||+..
T Consensus 167 ~~~LSgGe~QRl~LAraL~~~-~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~-~~g~tvIiitH~~~ 233 (261)
T cd03271 167 ATTLSGGEAQRIKLAKELSKR-STGKTLYILDEPTTGLHFHDVKKLLEVLQRLV-DKGNTVVVIEHNLD 233 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcC-CCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHH
Confidence 457899999999999887732 12356889999999999999998888888876 45778999999985
No 346
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=4.1e-06 Score=83.69 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=57.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+.+++||..++ ..++++++|||+++||..++..+...|.++....+.-+|++||+........++
T Consensus 127 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 127 PETLSGGEQQRVAIARALV----VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 3568999999999987776 356899999999999999999888888887633478999999987533333343
No 347
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.09 E-value=5.4e-06 Score=85.00 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=58.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||-.|+ ...+++++|||+.+||..++..+.+.|.++....+..+|++||+..... ..+++
T Consensus 138 ~~~LS~G~~qrv~lAraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i 210 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIA----LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRI 210 (277)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEE
Confidence 4569999999999998776 3568999999999999999999999998886334789999999975433 34443
No 348
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.09 E-value=7.4e-05 Score=87.77 Aligned_cols=39 Identities=3% Similarity=0.066 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 894 TYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFN 932 (1058)
Q Consensus 894 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 932 (1058)
++..++..+..++.......+.|......|...+..+|+
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llG 645 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLG 645 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444443333334444444444444444444
No 349
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.08 E-value=3.5e-06 Score=76.14 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=52.4
Q ss_pred CCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 974 lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
||||++.+++||..++ ...|++++|||+.+||..++..+.+.|.++ +..+|++||+........+.+
T Consensus 71 lS~G~~~rv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v 137 (144)
T cd03221 71 LSGGEKMRLALAKLLL----ENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKI 137 (144)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEE
Confidence 9999999999887665 467899999999999999988877777664 458999999875333333443
No 350
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.08 E-value=4.3e-06 Score=84.75 Aligned_cols=63 Identities=25% Similarity=0.282 Sum_probs=53.0
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1040 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1040 (1058)
.|||||+++++||-.++. +.+++++|||+++||...+..+.+.|.++. ..+.-||++||+...
T Consensus 145 ~LS~G~~qrv~laral~~----~p~illLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tiii~sH~~~~ 207 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVL----EPELCILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIVTHYQRI 207 (248)
T ss_pred CCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHH
Confidence 589999999999877763 568999999999999999988888887775 346789999998643
No 351
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.08 E-value=3.6e-06 Score=84.54 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=54.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
+..|||||+.+++||-.|+ .+.+++++|||+.+||..++..+...|.++. .+..+|++||+....
T Consensus 135 ~~~LS~G~~~rl~la~aL~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~ 199 (236)
T cd03253 135 GLKLSGGEKQRVAIARAIL----KNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAHRLSTI 199 (236)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEcCCHHHH
Confidence 4679999999999887766 3668999999999999999988888888875 378899999987533
No 352
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.08 E-value=0.036 Score=62.12 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=5.3
Q ss_pred HHHHHHHhcC
Q 001536 142 ELLELIDHFN 151 (1058)
Q Consensus 142 ~~~~~~~~~~ 151 (1058)
.+..-+..||
T Consensus 6 SVk~Avs~FG 15 (522)
T PF05701_consen 6 SVKEAVSLFG 15 (522)
T ss_pred HHHHHHHHcC
Confidence 4555555554
No 353
>PRK11637 AmiB activator; Provisional
Probab=98.08 E-value=0.0054 Score=67.39 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 001536 218 PTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCF 297 (1058)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1058)
.++.+++.++.++... ..++..++..+. ....++..+..++..+...+......+..+..++..++.++
T Consensus 44 ~~~~~l~~l~~qi~~~------~~~i~~~~~~~~-----~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 44 DNRDQLKSIQQDIAAK------EKSVRQQQQQRA-----SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred hhHHHHHHHHHHHHHH------HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544433 223333333332 33444444444444445555555555555555555555555
Q ss_pred HHHHHHHHHHHHhh
Q 001536 298 MKKKAEIAVMVEKT 311 (1058)
Q Consensus 298 ~~~~~~~~~~~~~~ 311 (1058)
..++..+......+
T Consensus 113 ~~~q~~l~~~~~~l 126 (428)
T PRK11637 113 AKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444443
No 354
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.08 E-value=6.5e-06 Score=73.21 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=56.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1045 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1045 (1058)
+..|||||+++++||=.+. ...++++-|||+.|+|+.....++.++.++- ..++-|++-||....+....
T Consensus 135 P~~LSGGEQQRvaIARAiV----~~P~vLlADEPTGNLDp~~s~~im~lfeein-r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 135 PSQLSGGEQQRVAIARAIV----NQPAVLLADEPTGNLDPDLSWEIMRLFEEIN-RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred ccccCchHHHHHHHHHHHc----cCCCeEeecCCCCCCChHHHHHHHHHHHHHh-hcCcEEEEEeccHHHHHhcc
Confidence 5679999999999985443 4455667899999999999999888888874 68999999999975555443
No 355
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=3.8e-06 Score=94.88 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=59.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..|+ ...+++++|||+++||..++..+.+.|.++. ..+.-||++||+........+.
T Consensus 402 ~~~~LSgG~kqrv~lA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 402 AIARLSGGNQQKAVLAKCLL----LNPKILILDEPTRGIDVGAKYEIYKLINQLV-QQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred ccccCCHHHHHHHHHHHHHh----hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHhCCE
Confidence 35679999999999998887 3678999999999999999999999888876 3577899999987544444443
No 356
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.07 E-value=4.2e-06 Score=95.18 Aligned_cols=71 Identities=28% Similarity=0.385 Sum_probs=60.5
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeE
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1050 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1050 (1058)
.||||+|++++||=++ ..+.|+++|||++++||..+.+.+.+.|.+.. .++-+|+|||++. +++..+++-|
T Consensus 609 ~LSGGQrQrlalARaL----l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~-ti~~adrIiV 679 (709)
T COG2274 609 NLSGGQRQRLALARAL----LSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLS-TIRSADRIIV 679 (709)
T ss_pred CCCHHHHHHHHHHHHh----ccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccch-HhhhccEEEE
Confidence 4799999999988554 46788899999999999999999999999987 8899999999995 6666655543
No 357
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.07 E-value=4e-06 Score=74.78 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=29.5
Q ss_pred cCceeeeCC-CeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 001536 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCIAFGCR 69 (1058)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~lg~~ 69 (1058)
++..++|.+ |+|.|+|||||||||++..+...+...
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d 54 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD 54 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc
Confidence 456677765 699999999999999999998777543
No 358
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.07 E-value=5.1e-06 Score=86.29 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=58.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+++++||..|+ ...++++||||+.+||..++..+.+.|.++. .+..||++||+........++
T Consensus 198 ~~~LSgGq~qrv~LAraL~----~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~--~~~tiiivtH~~~~i~~~~d~ 268 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLA----VDPEVILMDEPASALDPIATSKIEDLIEELA--EEYTVVVVTHNMQQAARISDQ 268 (305)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCE
Confidence 4568999999999998777 3678999999999999999999999998886 457899999998544443443
No 359
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=3.7e-06 Score=79.14 Aligned_cols=46 Identities=28% Similarity=0.391 Sum_probs=42.1
Q ss_pred EEEEEEEecccccCceeeeCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 001536 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGC 68 (1058)
Q Consensus 22 i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~ 68 (1058)
|.++.|.||++|.+..|.+.| +|+++|||.|||||.+.+|...+-+
T Consensus 2 i~sl~l~nfk~y~n~~i~l~~-ltVF~G~NssGKSt~iqsl~li~s~ 47 (374)
T COG4938 2 ILSLSLKNFKPYINGKIILKP-LTVFIGPNSSGKSTTIQSLYLIYSG 47 (374)
T ss_pred cceeeecCccceecceEEEec-ceEEEcCCCCchhHHHHHHHHHHHh
Confidence 789999999999999999997 9999999999999999999876643
No 360
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.07 E-value=3.5e-06 Score=97.09 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=61.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..|+ ...+++|+|||+++||..++..++++|.++....+.-||+|||+........+++
T Consensus 460 ~~~~LSgGqrQRv~iAraL~----~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri 534 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALA----LNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRV 534 (623)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999998876 4678999999999999999999999999886444788999999875444444544
No 361
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.07 E-value=3.9e-06 Score=94.63 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=59.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..++ .+.++++||||+.|||..++..+++.|.++. ..+.-||++||+........+.
T Consensus 393 ~~~~LSgGq~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 393 LIMNLSGGNQQKAILGRWLS----EDMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred ccccCCHHHHHHHHHHHHHc----cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHhhCCE
Confidence 45679999999999998776 4678999999999999999999999988876 3567799999997544444444
No 362
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.07 E-value=0.018 Score=60.62 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 641 IKDLERAALHVQEEAQQCRKRKRDSEERLQ 670 (1058)
Q Consensus 641 i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~ 670 (1058)
+..|...+...-..+..|+..-..|..++.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334444444443344444333333333333
No 363
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.031 Score=60.99 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=8.1
Q ss_pred CCcEEEEEccCCC
Q 001536 1027 QGSQWIFITPHDV 1039 (1058)
Q Consensus 1027 ~~~Q~i~iT~~~~ 1039 (1058)
..-|||.++-++.
T Consensus 1073 ~kgdiI~Vlnkde 1085 (1118)
T KOG1029|consen 1073 KKGDIINVLNKDE 1085 (1118)
T ss_pred cCCCEEEecCCCC
Confidence 3457777776653
No 364
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.06 E-value=3.8e-06 Score=87.14 Aligned_cols=74 Identities=18% Similarity=0.076 Sum_probs=59.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeE
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1050 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1050 (1058)
+..||||++.+++||..++ ...+++++|||+.|||+..+..+.+.|.++. .+..||++||.........+++.+
T Consensus 131 ~~~LS~G~~qrv~la~al~----~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sH~l~~~~~~~d~i~~ 204 (301)
T TIGR03522 131 IGQLSKGYRQRVGLAQALI----HDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KDKTIILSTHIMQEVEAICDRVII 204 (301)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEcCCHHHHHHhCCEEEE
Confidence 4678999999999987775 3568889999999999999999899888875 468899999887544454555433
No 365
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.06 E-value=3.3e-06 Score=82.42 Aligned_cols=73 Identities=10% Similarity=-0.059 Sum_probs=55.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||.+++||..++ .+++++++|||++++|+.++..+...|.+..+ +.-+|++||.........+++
T Consensus 101 ~~~~lS~G~~qrv~la~al~----~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i 173 (213)
T PRK15177 101 RVSEYSVTMKTHLAFAINLL----LPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNPRLIKEHCHAF 173 (213)
T ss_pred hHhhcCHHHHHHHHHHHHHh----cCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCHHHHHHhcCee
Confidence 34668999999999988776 36789999999999999998888887776552 233888888875433444444
No 366
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.06 E-value=3.5e-06 Score=95.67 Aligned_cols=75 Identities=20% Similarity=0.175 Sum_probs=60.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..|+ .+.+++++|||+++||..++..+.+.|.++....+.-||++||+........+.+
T Consensus 424 ~~~~LSgGq~qrv~laral~----~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i 498 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLI----KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRA 498 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEE
Confidence 45679999999999997765 3568999999999999999999999998876434778999999975444444443
No 367
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=5.5e-06 Score=84.65 Aligned_cols=72 Identities=25% Similarity=0.353 Sum_probs=57.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||++++++||-.++ ...+++++|||+++||+.++..+.+.|.++. ..+.-+|++||+.... ...+++
T Consensus 134 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~til~~tH~~~~~-~~~d~v 205 (274)
T PRK13644 134 PKTLSGGQGQCVALAGILT----MEPECLIFDEVTSMLDPDSGIAVLERIKKLH-EKGKTIVYITHNLEEL-HDADRI 205 (274)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHH-hhCCEE
Confidence 4578999999999987776 3568889999999999999999888888875 3578999999997543 334443
No 368
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=5e-06 Score=85.16 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=58.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||++.+++||-.++ ...+++++|||+++||..++..+++.|.++....+.-+|++||+..... ..+++
T Consensus 138 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i 210 (279)
T PRK13635 138 PHRLSGGQKQRVAIAGVLA----LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRV 210 (279)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEE
Confidence 3568999999999987776 3568889999999999999999999998886334789999999975333 34443
No 369
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.06 E-value=3.2e-06 Score=86.13 Aligned_cols=84 Identities=24% Similarity=0.332 Sum_probs=66.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe-
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI- 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~- 1048 (1058)
.++.||||+++++|||=.|+ ...+++.||||+++||..-|..+-.-|.++.+..+.-+|++||........+++|
T Consensus 133 ~p~qLSGGQqQRVALARAL~----~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~ 208 (352)
T COG3842 133 KPHQLSGGQQQRVALARALV----PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIA 208 (352)
T ss_pred ChhhhChHHHHHHHHHHHhh----cCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceE
Confidence 46789999999999987666 3345777999999999999988888888877677899999999997666666665
Q ss_pred -----eEEecCCCC
Q 001536 1049 -----KKQQMAAPR 1057 (1058)
Q Consensus 1049 -----~v~~~~~~~ 1057 (1058)
+|.+..+|+
T Consensus 209 Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 209 VMNDGRIEQVGTPE 222 (352)
T ss_pred EccCCceeecCCHH
Confidence 444555553
No 370
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=4.2e-06 Score=80.72 Aligned_cols=75 Identities=27% Similarity=0.232 Sum_probs=59.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
-+..||||+|+++|||=.+|.. .+.+.|||||.+||..-|+.+=.-|.++-...+.-+++|||+........+++
T Consensus 134 yP~QLSGGQrQRVALARALA~e----P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrv 208 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVE----PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRV 208 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcC----CCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceE
Confidence 3567999999999999888843 56778999999999987777666666665456899999999986555555554
No 371
>PRK00064 recF recombination protein F; Reviewed
Probab=98.05 E-value=8.6e-05 Score=78.85 Aligned_cols=66 Identities=26% Similarity=0.227 Sum_probs=51.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhh-----hcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHE-----MTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~-----~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
....+|+||+..++||+.+|... ....|+++||||+++||+.++..++..|.. -+.|+|+.||+..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~----~~~qv~it~~~~~ 340 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG----LGAQVFITTTDLE 340 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc----cCCEEEEEcCChh
Confidence 45678999999999999998543 357889999999999999987665555443 2569999998753
No 372
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.05 E-value=5.4e-06 Score=81.96 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=58.3
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
..|||||+++++||..++ ...+++++|||+++||...+..+...|.++....+.-+|++||.... ..+.+++
T Consensus 140 ~~lS~G~~qrv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v 211 (220)
T TIGR02982 140 HNLSGGQKQRVAIARALV----HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRI 211 (220)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEE
Confidence 468999999999987666 35689999999999999999888888888764457999999999853 3455443
No 373
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.04 E-value=5.1e-06 Score=93.55 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=59.4
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..++ .+.++++||||++|||..++..+.+.|.++. ..+.-||++||+........++
T Consensus 388 ~~~~LSgGq~qrv~la~al~----~~p~illLDEPt~gLD~~~~~~~~~~l~~l~-~~~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 388 QIGSLSGGNQQKVIIGRWLL----TQPEILMLDEPTRGIDVGAKFEIYQLIAELA-KKDKGIIIISSEMPELLGITDR 460 (491)
T ss_pred ccccCCcHHHHHHHHHHHHh----cCCCEEEEcCCCcccChhHHHHHHHHHHHHH-HCCCEEEEECCChHHHHhhCCE
Confidence 45679999999999987665 5678999999999999999999999888875 3577899999997544444444
No 374
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=5.2e-06 Score=86.59 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=58.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
...||||||++++||-.++ ...++++||||+++||......+.+.|..+. .++-+|++||+........+++
T Consensus 223 ~~~LSgGqkqRl~LARAl~----~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~--~~~Tii~iTH~l~~i~~~~Dri 294 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIA----LEPEVLLMDEPTSALDPIATAKIEELILELK--KKYSIIIVTHSMAQAQRISDET 294 (329)
T ss_pred cccCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEE
Confidence 4568999999999987665 4788999999999999999888888888776 5789999999986444444554
No 375
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.04 E-value=7.1e-06 Score=83.35 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=53.6
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
.|||||+.+++||..++ ...+++++|||+++||..++..+.+.|.++. ..+.-||++||+..
T Consensus 151 ~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~~tH~~~ 212 (252)
T CHL00131 151 GFSGGEKKRNEILQMAL----LDSELAILDETDSGLDIDALKIIAEGINKLM-TSENSIILITHYQR 212 (252)
T ss_pred CCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHH
Confidence 48999999999998777 3568889999999999999999898888876 35788999999864
No 376
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.03 E-value=4.4e-06 Score=94.03 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=59.4
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||-.|+ .+.+++++|||+++||...+..+.+.|.++. ..+.-||++||+........+++
T Consensus 131 ~~~~LSgGq~qrv~lA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvii~tH~~~~~~~~~d~i 204 (491)
T PRK10982 131 KVATLSVSQMQMIEIAKAFS----YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK-ERGCGIVYISHKMEEIFQLCDEI 204 (491)
T ss_pred chhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHhCCEE
Confidence 35679999999999998776 3678999999999999999999999888875 45778999999874333444443
No 377
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.02 E-value=5.2e-06 Score=83.15 Aligned_cols=73 Identities=23% Similarity=0.231 Sum_probs=57.8
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++. +.++++||||+++||..++..+...|.++. ..+.-+|++||+........+.+
T Consensus 137 ~~~LS~G~~qrv~laral~~----~p~illlDEPts~LD~~~~~~l~~~l~~l~-~~~~tIIiiSHd~~~~~~~ad~i 209 (255)
T cd03236 137 IDQLSGGELQRVAIAAALAR----DADFYFFDEPSSYLDIKQRLNAARLIRELA-EDDNYVLVVEHDLAVLDYLSDYI 209 (255)
T ss_pred hhhCCHHHHHHHHHHHHHHh----CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEE
Confidence 45689999999999988763 568999999999999999988888888876 34677999999874333334443
No 378
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.02 E-value=9.8e-06 Score=73.48 Aligned_cols=79 Identities=25% Similarity=0.256 Sum_probs=64.8
Q ss_pred cCCccCCCCchhHHHHHHHHH-hhhhcCCC-eeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCC
Q 001536 969 RDTRGLSGGERSFSTLCFALA-LHEMTEAP-FRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1046 (1058)
Q Consensus 969 ~~~~~lSgGE~~~~~la~~~a-l~~~~~~p-~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1046 (1058)
++...|||||++++.||=.+| +|...+.| .+++|||++.||-.+-...+.+..+|+ ..+.=|++|-|.-.....|.+
T Consensus 131 R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la-~~g~~V~~VLHDLNLAA~YaD 209 (259)
T COG4559 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA-REGGAVLAVLHDLNLAAQYAD 209 (259)
T ss_pred cchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHH-hcCCcEEEEEccchHHHHhhh
Confidence 457789999999999997776 66666666 667999999999999888888888887 466899999988765666776
Q ss_pred Ce
Q 001536 1047 RI 1048 (1058)
Q Consensus 1047 ~~ 1048 (1058)
++
T Consensus 210 ri 211 (259)
T COG4559 210 RI 211 (259)
T ss_pred ee
Confidence 64
No 379
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.02 E-value=5.5e-06 Score=88.18 Aligned_cols=74 Identities=22% Similarity=0.192 Sum_probs=59.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||-.|+ ...++++||||+.+||..++..+.+.|.++.. .+.-||++||.........+++
T Consensus 136 ~~~~LSgGerQRv~IArAL~----~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adri 209 (402)
T PRK09536 136 PVTSLSGGERQRVLLARALA----QATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDEL 209 (402)
T ss_pred ChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEE
Confidence 35679999999999998776 35689999999999999999888888888863 5678888888864444445554
No 380
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.01 E-value=0.0022 Score=72.96 Aligned_cols=92 Identities=12% Similarity=0.222 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchhHHH
Q 001536 641 IKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEIS 720 (1058)
Q Consensus 641 i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 720 (1058)
+..|+.++..++.++...+..-.++..++..+...-..++.++..++.+...++.++..+....+. ....+..++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~-----DKq~l~~LE 494 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ-----DKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 344555555555555544444444444444333333344444444444444444444444443332 222333344
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001536 721 QEISNIQEEIQEKEIIL 737 (1058)
Q Consensus 721 ~~~~~l~~~~~~~~~~~ 737 (1058)
.++.........++.++
T Consensus 495 krL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 495 KRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 381
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.01 E-value=9.5e-06 Score=78.65 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=27.6
Q ss_pred cCceeeeCC-CeEEEEcCCCCcHHHHHHHHHHHhc
Q 001536 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCIAFG 67 (1058)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~lg 67 (1058)
.+..|.+.+ .++.|.|||||||||++.+|.-.|-
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 455666655 5999999999999999999986664
No 382
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.01 E-value=6.2e-06 Score=83.34 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=57.4
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..|||||+.+++||-.|+ .+.+++++|||+.+||...+..+.+.|.++. .+..+|++||+........++
T Consensus 151 ~~~LS~G~~qrl~laral~----~~P~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiilvsh~~~~~~~~~d~ 221 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALA----LKPKVLLMDEPTSMIDIVNSQAIEKLITELK--NEIAIVIVSHNPQQVARVADY 221 (257)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCcEEEEEECCHHHHHHhCCE
Confidence 4568999999999997776 3568889999999999999998888888875 468999999997533333343
No 383
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.00 E-value=1.1e-05 Score=77.69 Aligned_cols=77 Identities=26% Similarity=0.261 Sum_probs=63.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
-++.||||++++++||-.+|+- .-|+|.||+.++||-.-+..+.++|.++-...+.=|+||||.-......++++.
T Consensus 106 yPhelSGGQrQRi~IARALal~----P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~ 181 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALN----PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIA 181 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhC----CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEE
Confidence 4678999999999999988864 447889999999999999999999999876678999999998754444555554
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
|
T Consensus 182 V 182 (268)
T COG4608 182 V 182 (268)
T ss_pred E
Confidence 4
No 384
>COG5293 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=0.026 Score=57.59 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhhcc-CceeeEeeccccce-eEEEEecCCCCCCCcccCCccCCCC--chhHHHHHHHHHhhh--hcCC
Q 001536 923 LKRQLTWQFNGHLGKK-GISGKININYEEKT-LSIEVKMPQDASSSNVRDTRGLSGG--ERSFSTLCFALALHE--MTEA 996 (1058)
Q Consensus 923 ~~~~~~~~f~~~~~~~-~~~g~~~~~~~~~~-l~i~v~~~~~~~~~~~~~~~~lSgG--E~~~~~la~~~al~~--~~~~ 996 (1058)
+++.+..+|+.++... .+.|.+.+++...+ ++..+.+....| ..-|-| -+-..-+.|.||+.. -.|+
T Consensus 439 ~~~~~~~lF~~~~r~~yd~~G~L~~~~~kng~~tfg~eI~~~~p-------d~~s~G~~~mki~c~dl~la~lr~~ndps 511 (591)
T COG5293 439 LFASIGRLFKEMIREVYDCYGSLRVTTNKNGHLTFGAEITDAAP-------DSASLGNTYMKIMCIDLDLAVLRALNDPS 511 (591)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEecCCCceeeeeeeeccCC-------CchhhccceeeeehHHHHHHHHHHccCCC
Confidence 4555666676666554 57788888777655 555555432222 222555 122223344444433 3556
Q ss_pred C-eeeech-hhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 997 P-FRAMDE-FDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 997 p-~~v~DE-~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
| +++=|- +|-++|.+--..+...+..++++.+.||+|---..+
T Consensus 512 priliHDgs~f~~~d~rk~~lll~v~~~~aesrg~Qy~~Tln~~~ 556 (591)
T COG5293 512 PRILIHDGSVFESLDDRKKELLLRVIRQYAESRGIQYVMTLNDSD 556 (591)
T ss_pred ccEEEecCcccCCCcHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 6 445676 788899887666666666777688999987554443
No 385
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.00 E-value=5.6e-06 Score=93.40 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||-.|+. +.+++++|||+++||..++..+.+.|.++. ..+.-||++||+........++
T Consensus 137 ~~~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiiiitHd~~~~~~~~d~ 209 (501)
T PRK11288 137 PLKYLSIGQRQMVEIAKALAR----NARVIAFDEPTSSLSAREIEQLFRVIRELR-AEGRVILYVSHRMEEIFALCDA 209 (501)
T ss_pred chhhCCHHHHHHHHHHHHHHh----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCCE
Confidence 356799999999999877763 678999999999999999999999998875 3577899999987433333343
No 386
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.99 E-value=1.1e-05 Score=78.78 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=52.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHH-HHHHhcCCcEEEEEccCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTL-VDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l-~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
...|||||+++++||-.++. ..+++++|||+++||..+...++..+ .... ..+.-+|++||+.....
T Consensus 125 ~~~lS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~ll~~~~-~~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 125 GINLSGGQKQRISLARAVYS----DADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLP 192 (204)
T ss_pred CCcCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHhc-cCCCEEEEEeCCHHHHh
Confidence 45689999999999877763 66899999999999999887777754 4443 24688999999975333
No 387
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.99 E-value=1.1e-05 Score=79.60 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=54.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHH-HHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDT-LVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~-l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||-.++ .+.+++++|||+++||..++..+++. +....+..+.-+|++||..... ...+++
T Consensus 138 ~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~-~~~d~i 211 (218)
T cd03290 138 GINLSGGQRQRICVARALY----QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL-PHADWI 211 (218)
T ss_pred CCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-hhCCEE
Confidence 5679999999999987665 35689999999999999988777762 4444434568899999998543 344433
No 388
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.98 E-value=5.7e-06 Score=93.55 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=58.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
+..||||||++++||-.|+. ..+++++|||+++||..++..+.+.|.++. ..+.-||++||+........+.
T Consensus 139 ~~~LSgG~~qrv~iA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiitHd~~~~~~~~d~ 210 (500)
T TIGR02633 139 VGDYGGGQQQLVEIAKALNK----QARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKLNEVKAVCDT 210 (500)
T ss_pred hhhCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcHHHHHHhCCE
Confidence 56799999999999987774 567889999999999999999999998876 4577899999986433343444
No 389
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=5.7e-06 Score=93.43 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=59.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..|+ ...+++++|||+++||+.++..+.+.|.++. ..+.-||++||+........+++
T Consensus 140 ~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tvi~~tH~~~~~~~~~d~v 213 (506)
T PRK13549 140 PVGNLGLGQQQLVEIAKALN----KQARLLILDEPTASLTESETAVLLDIIRDLK-AHGIACIYISHKLNEVKAISDTI 213 (506)
T ss_pred chhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHHHHHHhcCEE
Confidence 35679999999999998776 4677999999999999999999999998885 35678999999864344444443
No 390
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.98 E-value=5.9e-06 Score=93.18 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=59.7
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..|+ .+.+++++|||+++||..++..+.+.|.++. ..+.-||++||+........+.+
T Consensus 137 ~~~~LSgG~~qrv~la~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiiivtHd~~~~~~~~d~i 210 (510)
T PRK15439 137 SAGSLEVADRQIVEILRGLM----RDSRILILDEPTASLTPAETERLFSRIRELL-AQGVGIVFISHKLPEIRQLADRI 210 (510)
T ss_pred ChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999998776 3678999999999999999999999998876 35778999999875444444443
No 391
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.98 E-value=6.8e-06 Score=94.76 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=60.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..|+ ...+++++|||+++||...+..+.++|.++....+.-||++||.........+++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~----~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri 239 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALS----CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRV 239 (623)
T ss_pred CCccCCHHHHHHHHHHHHHh----CCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 45679999999999998777 4677999999999999999999999998886434778999999875444444444
No 392
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.95 E-value=0.02 Score=61.75 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQ 677 (1058)
Q Consensus 638 ~~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 677 (1058)
+.++..+..-+++.......++.++..+..++..++..+.
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333333333
No 393
>PRK13409 putative ATPase RIL; Provisional
Probab=97.95 E-value=8e-06 Score=92.48 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=60.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCee
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1049 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1049 (1058)
.+..|||||+++++||..++ ...++++||||+++||...+..+...|.++. . +.-||++||+........+.+.
T Consensus 209 ~~~~LSgGe~qrv~ia~al~----~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~~~l~~~~D~v~ 282 (590)
T PRK13409 209 DISELSGGELQRVAIAAALL----RDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDLAVLDYLADNVH 282 (590)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEE
Confidence 45679999999999997766 4678999999999999999999999998886 3 8889999999754444445443
Q ss_pred E
Q 001536 1050 K 1050 (1058)
Q Consensus 1050 v 1050 (1058)
|
T Consensus 283 v 283 (590)
T PRK13409 283 I 283 (590)
T ss_pred E
Confidence 3
No 394
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.94 E-value=7.6e-06 Score=92.66 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||-.|+ .+.+++++|||+++||..++..+.+.|.++. ..+.-||++||+........+++
T Consensus 142 ~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivsHd~~~~~~~~d~v 215 (510)
T PRK09700 142 KVANLSISHKQMLEIAKTLM----LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR-KEGTAIVYISHKLAEIRRICDRY 215 (510)
T ss_pred chhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999998776 4678999999999999999999999998886 34677999999864333344443
No 395
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.93 E-value=0.021 Score=65.33 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 408 EKLSKEKNEIRRISDEIEDYDKKCREIRSEIRE 440 (1058)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 440 (1058)
..+.+...+++-+...+..-..++.+|..++..
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444433
No 396
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.93 E-value=8.3e-06 Score=92.02 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=58.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..|+ ...++++||||+++||..++..+.+.|.++. ..+.-||++||+........+++
T Consensus 138 ~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tvii~sHd~~~~~~~~d~i 211 (501)
T PRK10762 138 LVGELSIGEQQMVEIAKVLS----FESKVIIMDEPTDALTDTETESLFRVIRELK-SQGRGIVYISHRLKEIFEICDDV 211 (501)
T ss_pred chhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999998776 3677899999999999999999888888875 34677999999864333444443
No 397
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=2.2e-05 Score=71.41 Aligned_cols=61 Identities=25% Similarity=0.284 Sum_probs=47.2
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1038 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1038 (1058)
..||||+++++.||=.+|+. .-.+.||||.++||+.....+-++|.++. ...-|+++||+-
T Consensus 148 ~~LSGGQQQRLcIARalAv~----PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~yTIviVTHnm 208 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVK----PEVLLMDEPTSALDPISTLKIEELITELK--KKYTIVIVTHNM 208 (253)
T ss_pred cCCChhHHHHHHHHHHHhcC----CcEEEecCcccccCchhHHHHHHHHHHHH--hccEEEEEeCCH
Confidence 35899999999888777742 33556999999999987666666666665 788999999874
No 398
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.92 E-value=9.4e-06 Score=94.06 Aligned_cols=67 Identities=25% Similarity=0.336 Sum_probs=56.5
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1046 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1046 (1058)
.||||||++++||=.+. .+.|+++||||+++||..+...+.+.|.++. ++.-+|+|||++. .....+
T Consensus 469 ~LSgGqrQRiaLARall----~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~-~~~~~D 535 (571)
T TIGR02203 469 LLSGGQRQRLAIARALL----KDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLS-TIEKAD 535 (571)
T ss_pred cCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhH-HHHhCC
Confidence 48999999999986554 5779999999999999999999999898876 7899999999985 344343
No 399
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.92 E-value=9.8e-06 Score=93.99 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=56.3
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.||||||++++||=.+. .+.|+++|||++++||..+...+.+.|.++. ++.-+|+|||+..+. ...+.
T Consensus 485 ~LSGGQrQRialARAll----~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i-~~aD~ 552 (588)
T PRK11174 485 GLSVGQAQRLALARALL----QPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDL-AQWDQ 552 (588)
T ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHH-HhCCE
Confidence 38999999999985443 4779999999999999999999999888876 788999999998543 33433
No 400
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.92 E-value=1.2e-05 Score=81.66 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=54.7
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
...|||||+++++||-.++ ...+++++|||+++||+..+..+...|..+. .+.-+|++||+.....
T Consensus 154 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~~ 219 (257)
T cd03288 154 GENFSVGQRQLFCLARAFV----RKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVSTIL 219 (257)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHHHH
Confidence 4568999999999887776 3568999999999999999888888887764 5789999999986444
No 401
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.90 E-value=1.5e-05 Score=79.84 Aligned_cols=78 Identities=28% Similarity=0.301 Sum_probs=64.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCeeE
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1050 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1050 (1058)
++.||||+|+++.||..+| ...-++|-|||+++||-.--..++++|.++-..-++=++||||.-...-.+++++-|
T Consensus 155 PHeLSGGqRQRVMIAMALa----n~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 155 PHELSGGQRQRVMIAMALA----NEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred CcccCcchhhHHHHHHHHc----CCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 6789999999999987766 334577899999999999888899999988767899999999998655567766655
Q ss_pred Ee
Q 001536 1051 QQ 1052 (1058)
Q Consensus 1051 ~~ 1052 (1058)
-+
T Consensus 231 M~ 232 (534)
T COG4172 231 MQ 232 (534)
T ss_pred Ee
Confidence 43
No 402
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.89 E-value=1.3e-05 Score=81.13 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=56.2
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
..||||++++++||-.++ .+.+++|+|||+++||...+..+.+.|.+.. .++.||+|||+..... ..+++
T Consensus 137 ~~LS~G~~qrl~LaRall----~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~-~~dri 206 (275)
T cd03289 137 CVLSHGHKQLMCLARSVL----SKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAML-ECQRF 206 (275)
T ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHH-hCCEE
Confidence 358999999999987766 3568899999999999999988888888765 6789999999985333 34443
No 403
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.89 E-value=2e-05 Score=80.15 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=54.5
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHH-HHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLV-DFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~-~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..|||||+.+++||..++ .+.+++++|||+++||...+..+...+. .+. .+..+|++||+... ....+.+
T Consensus 157 ~~~LSgGq~qrv~lAraL~----~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~-~~~~d~i 228 (282)
T cd03291 157 GITLSGGQRARISLARAVY----KDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEH-LKKADKI 228 (282)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHH-HHhCCEE
Confidence 4578999999999887776 3678999999999999998877777654 443 56889999998743 3344443
No 404
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.88 E-value=8e-06 Score=93.20 Aligned_cols=71 Identities=25% Similarity=0.262 Sum_probs=56.4
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..++ .+.++++||||+++||..++..+.+.|.++. + -||++||+........+.+
T Consensus 440 ~~~~LSgGe~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~~~~~~~d~i 510 (552)
T TIGR03719 440 KVGQLSGGERNRVHLAKTLK----SGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRWFLDRIATHI 510 (552)
T ss_pred chhhCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHHHHHHhCCEE
Confidence 45679999999999998775 4788999999999999999988888887763 4 4999999875444444443
No 405
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.87 E-value=1.5e-05 Score=91.53 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=55.4
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
..||||||++++||-.|. .+.|+++||||+++||..++..+.+.|.++. .+.-+|+|||+....
T Consensus 470 ~~LSgGq~qrl~lARall----~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~ 533 (585)
T TIGR01192 470 NRLSGGERQRLAIARAIL----KNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLSTV 533 (585)
T ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHH
Confidence 358999999999987665 5788999999999999999999888888775 688999999998544
No 406
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.87 E-value=0.018 Score=51.60 Aligned_cols=205 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 001536 636 SYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASA 715 (1058)
Q Consensus 636 ~l~~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 715 (1058)
.....+..+...+..++.++...+.++..+..++..+.+....-...+..+.......+..+..+..++.. ....
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkE-----Ak~i 75 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKE-----AKHI 75 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001536 716 VDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAH 795 (1058)
Q Consensus 716 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1058)
..............+..++..+.............+..+...+.-+...+..+...-..+..........+..+...+.+
T Consensus 76 aE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 76 AEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhhhcCCCCCCCHHHHHHHHHHH
Q 001536 796 YEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRL 859 (1058)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 859 (1058)
..... ......+..++..++++...+.......... ...++..-..+..+
T Consensus 156 aE~rA-E~aERsVakLeke~DdlE~kl~~~k~ky~~~-------------~~eLD~~~~~L~~~ 205 (205)
T KOG1003|consen 156 AETRA-EFAERRVAKLEKERDDLEEKLEEAKEKYEEA-------------KKELDETLQELENL 205 (205)
T ss_pred hhhhH-HHHHHHHHHHcccHHHHHHhhHHHHHHHHHH-------------HHHHHHHHHHhhcC
No 407
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.86 E-value=1.6e-05 Score=91.26 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=55.6
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
..||||||++++||-.+. .+.|+++||||+++||+.++..+.+.|.++. .+.-+|++||+.....
T Consensus 450 ~~LSgGq~qRi~lARall----~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~ 514 (569)
T PRK10789 450 VMLSGGQKQRISIARALL----LNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALT 514 (569)
T ss_pred CcCCHHHHHHHHHHHHHh----cCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHH
Confidence 348999999999986654 5789999999999999999999999888875 6789999999985443
No 408
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.86 E-value=0.038 Score=55.01 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 262 LKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAV 306 (1058)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (1058)
...+..++.+....+..+.++...+...+..+..+..++..+.+.
T Consensus 125 ~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qs 169 (499)
T COG4372 125 LAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 409
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.075 Score=58.21 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=3.0
Q ss_pred cEEEEE
Q 001536 1029 SQWIFI 1034 (1058)
Q Consensus 1029 ~Q~i~i 1034 (1058)
+|||-+
T Consensus 1054 ~qviam 1059 (1118)
T KOG1029|consen 1054 CQVIAM 1059 (1118)
T ss_pred ceeEEe
Confidence 455544
No 410
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.85 E-value=1.5e-05 Score=92.32 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=54.1
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
.||||||++++||=.+ +.+.|++|||||+++||+.++..+.+.|.+.. .+.-+|+|||+...+
T Consensus 471 ~LSgGq~QRialARal----l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~ 533 (588)
T PRK13657 471 QLSGGERQRLAIARAL----LKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTV 533 (588)
T ss_pred CCCHHHHHHHHHHHHH----hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHH
Confidence 4899999998888443 35889999999999999999999888888875 689999999998543
No 411
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.84 E-value=2.1e-05 Score=79.71 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=57.1
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
+..||||+|+++||+=.+. ....++.||||+++||..-|..+-..|.++-+.-+.-+|++||+.......++++
T Consensus 131 P~~LSGGQrQRVAlaRAlV----r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri 204 (338)
T COG3839 131 PLQLSGGQRQRVALARALV----RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRI 204 (338)
T ss_pred cccCChhhHHHHHHHHHHh----cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEE
Confidence 5789999999999986554 4445667999999999998877777777765456788999999985544455554
No 412
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.84 E-value=1.5e-05 Score=76.73 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=25.1
Q ss_pred cCceeeeCC-CeEEEEcCCCCcHHHHHHHHHH
Q 001536 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~~ 64 (1058)
.+.++.+.+ .++.|+||||||||||+.+|.-
T Consensus 21 ~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 21 EDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred eccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 445666666 4899999999999999999864
No 413
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.83 E-value=1.8e-05 Score=91.84 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=54.3
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
.||||||++++||=.+ +...|+++||||+++||+.+...+++.|.++. .+.-+|+|||+.....
T Consensus 480 ~LSGGqrQRi~LARal----l~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~~ 543 (582)
T PRK11176 480 LLSGGQRQRIAIARAL----LRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIE 543 (582)
T ss_pred cCCHHHHHHHHHHHHH----HhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH
Confidence 4899999999987443 35779999999999999999999999998876 7899999999985433
No 414
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=1.2e-05 Score=92.77 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=55.8
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
++..||||||++++||.+++ .+.++++||||+.+||...+..+.+.|.++ .+ -||++||+........++
T Consensus 427 ~~~~LSgGekqRl~La~~l~----~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~~~~~~~d~ 496 (638)
T PRK10636 427 ETRRFSGGEKARLVLALIVW----QRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRHLLRSTTDD 496 (638)
T ss_pred chhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHHHHHHhCCE
Confidence 45679999999999998776 467899999999999999998888888776 34 699999987533333444
No 415
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.83 E-value=0.1 Score=59.08 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKEL 695 (1058)
Q Consensus 639 ~~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1058)
.+|..|++++.+++.+...+...+...+.++...+..+......+..+...+..+..
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777777777777777777766666666666666666666666655555544
No 416
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.83 E-value=2.2e-05 Score=89.73 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=55.0
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
..||||||++++||=.+. .+.|++|||||++++|+.++..+.+.+.+.....+.-+|+|||+... ....+.
T Consensus 469 ~~LSgGq~qRlalaRall----~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~-~~~~d~ 539 (555)
T TIGR01194 469 TALSTGQQKRLALICAWL----EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY-FELADQ 539 (555)
T ss_pred ccCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-HHhCCE
Confidence 569999999999986443 58899999999999999998887776654222367899999999853 333443
No 417
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.83 E-value=0.015 Score=55.65 Aligned_cols=65 Identities=8% Similarity=0.138 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001536 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSF 704 (1058)
Q Consensus 640 ~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 704 (1058)
++..+...+......+..+...+..+...+..++.++..++.++..++.++..++.++...+..+
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444445555555555544444444433
No 418
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.82 E-value=3.7e-05 Score=67.41 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=52.9
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1038 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1038 (1058)
+..||||++++++||=.||+. ....+||||+++||++-.-.++..|.+++ ..+.-.+++||.-
T Consensus 150 P~~LSGGQQQR~aIARaLame----P~vmLFDEPTSALDPElVgEVLkv~~~LA-eEgrTMv~VTHEM 212 (256)
T COG4598 150 PAHLSGGQQQRVAIARALAME----PEVMLFDEPTSALDPELVGEVLKVMQDLA-EEGRTMVVVTHEM 212 (256)
T ss_pred ccccCchHHHHHHHHHHHhcC----CceEeecCCcccCCHHHHHHHHHHHHHHH-HhCCeEEEEeeeh
Confidence 456899999999999888854 33456999999999998888888888888 5788999999864
No 419
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.82 E-value=3.5e-05 Score=78.78 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=42.0
Q ss_pred CCCCCCCCCeeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHH
Q 001536 11 GYGPQRSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1058)
Q Consensus 11 ~~~~~~~~~m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 65 (1058)
.-++|..+++.+..|.+. +...+.+..+.+.+| +.+|+||||||||||+.+|.-.
T Consensus 12 ~~~~~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 12 ATINPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred cccCCCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 456677778888888775 111357778888776 8889999999999999998633
No 420
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.81 E-value=2e-05 Score=91.47 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=55.2
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1043 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1043 (1058)
.||||||++++||=.+. .+.|+++||||+++||+.+...+.+.|.+.. .+.-+|+|||+......
T Consensus 476 ~LSGGqrQRialARaLl----~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~~~l~~ 540 (592)
T PRK10790 476 NLSVGQKQLLALARVLV----QTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRLSTIVE 540 (592)
T ss_pred CCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHHh
Confidence 48999999999885444 5779999999999999999999889898876 67899999999854443
No 421
>PLN03211 ABC transporter G-25; Provisional
Probab=97.81 E-value=2.8e-05 Score=89.50 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=55.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
+..||||||.+++||..++. +.+++++|||++|||..++..+++.|.+++. .+.-||++||++.
T Consensus 204 ~~~LSgGerqRv~ia~aL~~----~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~ 267 (659)
T PLN03211 204 IRGISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPS 267 (659)
T ss_pred CCCcChhhhhHHHHHHHHHh----CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCC
Confidence 45689999999999987763 5688899999999999999999999998873 5788999999985
No 422
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.81 E-value=2.2e-05 Score=90.12 Aligned_cols=65 Identities=34% Similarity=0.393 Sum_probs=55.7
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
..||||||++++||=.+. .+.|++|||||++++|+.++..+.+.|.++. .+.-+|+|||+..+..
T Consensus 474 ~~LSgGqrqRialARall----~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~ 538 (574)
T PRK11160 474 RQLSGGEQRRLGIARALL----HDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGLE 538 (574)
T ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHH
Confidence 358999999999986554 5779999999999999999999889888876 6889999999986443
No 423
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.81 E-value=3.3e-05 Score=80.13 Aligned_cols=62 Identities=26% Similarity=0.327 Sum_probs=50.0
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeee-echhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRA-MDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v-~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
..||||+|++++||=.| | +-||+| +|||+++||..-.......|... +..+.=+|+|||++.
T Consensus 471 ~~LSgGQRQRIaLARAl----Y-G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~-k~rG~~vvviaHRPs 533 (580)
T COG4618 471 ATLSGGQRQRIALARAL----Y-GDPFLVVLDEPNSNLDSEGEAALAAAILAA-KARGGTVVVIAHRPS 533 (580)
T ss_pred CCCCchHHHHHHHHHHH----c-CCCcEEEecCCCCCcchhHHHHHHHHHHHH-HHcCCEEEEEecCHH
Confidence 35899999999988443 2 456555 99999999999888777777765 468899999999995
No 424
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.79 E-value=1.9e-05 Score=70.58 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=60.4
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCC-CCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK-QGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~-~~~~~ 1048 (1058)
-+++||||+|+++.+|..+| ...-++.||||.-+||..+...+++.|.+++..-+.-++++ .|++.+.. +++.|
T Consensus 132 yLd~LSGGQrQRAfIAMVla----QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviV-lHDINfAS~YsD~I 206 (252)
T COG4604 132 YLDELSGGQRQRAFIAMVLA----QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVV-LHDINFASCYSDHI 206 (252)
T ss_pred hHHhcccchhhhhhhheeee----ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEE-EecccHHHhhhhhe
Confidence 36789999999999887665 56778889999999999999999999999986445445444 45555543 44443
Q ss_pred ------eEEecCCCC
Q 001536 1049 ------KKQQMAAPR 1057 (1058)
Q Consensus 1049 ------~v~~~~~~~ 1057 (1058)
+|.+-.+|+
T Consensus 207 VAlK~G~vv~~G~~~ 221 (252)
T COG4604 207 VALKNGKVVKQGSPD 221 (252)
T ss_pred eeecCCEEEecCCHH
Confidence 444445553
No 425
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.79 E-value=1.4e-05 Score=91.28 Aligned_cols=71 Identities=24% Similarity=0.229 Sum_probs=56.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..++ .+.+++++|||++|||..++..+.+.|.++. + -||++||+........+.+
T Consensus 442 ~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~~~~~~~~d~i 512 (556)
T PRK11819 442 KVGVLSGGERNRLHLAKTLK----QGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDRWFLDRIATHI 512 (556)
T ss_pred chhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCHHHHHHhCCEE
Confidence 45679999999999997765 5788999999999999999988888887752 4 4899999875444444443
No 426
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.79 E-value=4.6e-05 Score=74.04 Aligned_cols=66 Identities=24% Similarity=0.227 Sum_probs=54.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
-+..||||+|++++||=.+|.. .-+++.||++++||+.....++.+|.++-+.-+.-+++|||.-.
T Consensus 138 yP~qLSGGQKQRVaIARALa~~----P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 138 YPAQLSGGQKQRVAIARALANN----PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred CchhcCcchhhHHHHHHHHhcC----CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 3567999999999999887732 22455899999999999988899998876678999999999754
No 427
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=0.00014 Score=74.19 Aligned_cols=68 Identities=19% Similarity=0.082 Sum_probs=51.6
Q ss_pred CccCCCCchhHHHHHHHHHhhh-----hcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHE-----MTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1043 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~-----~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1043 (1058)
.+.+|+|++..++++..+|... +...|+++||||+++||+..+..+...|.++ .|+|++||+......
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~-----~q~ii~~~~~~~~~~ 253 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR-----VQTFVTTTDLADFDA 253 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC-----CCEEEEeCCchhccc
Confidence 5668999999999999887432 3567888899999999999876655555442 389999988754444
No 428
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=1.8e-05 Score=90.07 Aligned_cols=70 Identities=21% Similarity=0.186 Sum_probs=55.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..++ .+.+++++|||+++||..++..+.+.|.++ +.-||++||+........+.
T Consensus 435 ~~~~LSgGq~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~ 504 (530)
T PRK15064 435 SVKVLSGGEKGRMLFGKLMM----QKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATR 504 (530)
T ss_pred cccccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCE
Confidence 45679999999999998776 478899999999999999988877777664 23699999997544444444
No 429
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.78 E-value=2.2e-05 Score=92.83 Aligned_cols=69 Identities=29% Similarity=0.355 Sum_probs=57.6
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.||||||++++||=.+. .+.|+++||||+++||+.++..+.+.|.++. .+.-+|+|||+..+ ....+.+
T Consensus 601 ~LSgGQrQRlalARall----~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~~-~~~~D~i 669 (694)
T TIGR03375 601 SLSGGQRQAVALARALL----RDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTSL-LDLVDRI 669 (694)
T ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHHH-HHhCCEE
Confidence 48999999999986554 6789999999999999999999999998876 78999999999854 3444443
No 430
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.78 E-value=3.8e-05 Score=77.99 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCCeeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHH
Q 001536 16 RSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1058)
Q Consensus 16 ~~~~m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 65 (1058)
.++++.+..+... +...+.+..+.+.+| +.+|+|||||||||++.+|.-.
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3566777777764 112356777888776 8999999999999999999643
No 431
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.4e-05 Score=69.68 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=39.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
++.+||.|++-++|||=++ .++.|+-|+|||++++|..++.....+|..-+ ..+-=||+-||++.
T Consensus 127 p~~~LSAGQqRRvAlArL~----ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~-~~GGiVllttHq~l 191 (209)
T COG4133 127 PVGQLSAGQQRRVALARLW----LSPAPLWILDEPFTALDKEGVALLTALMAAHA-AQGGIVLLTTHQPL 191 (209)
T ss_pred chhhcchhHHHHHHHHHHH----cCCCCceeecCcccccCHHHHHHHHHHHHHHh-cCCCEEEEecCCcc
Confidence 3556777777777776444 35567777777777777766555444444433 34455666666664
No 432
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.78 E-value=6.6e-06 Score=77.06 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=0.0
Q ss_pred Eecccc---cCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 28 ENFMCH---SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 28 ~nf~~~---~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
..|+++ ++++++..+| ++.|+|||||||||+++.|.
T Consensus 12 k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit 51 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT 51 (250)
T ss_pred eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec
No 433
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.77 E-value=0.13 Score=58.70 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 873 SIEDLRMLYEEKEHKILRKQQTYQAFREKVRA 904 (1058)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 904 (1058)
.++++...++.+..+..++......+...|..
T Consensus 477 e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 477 LLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556665555555555543
No 434
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.76 E-value=0.12 Score=57.96 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001536 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDL 672 (1058)
Q Consensus 640 ~i~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 672 (1058)
++......|.....+...+......+..++...
T Consensus 289 ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~ 321 (522)
T PF05701_consen 289 ELEEAKKELEKAKEEASSLRASVESLRSELEKE 321 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 435
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=5.1e-05 Score=70.27 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=30.2
Q ss_pred CeeEEEEEEEecc--c-ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 19 AGTITRVRLENFM--C-HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 19 ~m~i~~l~l~nf~--~-~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
|-.|+-|++.==+ . .++..+.+.+| +.+|.||||||||||..+|.
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~ 51 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIM 51 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3445555554321 2 25666777665 88899999999999887775
No 436
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.76 E-value=3.5e-05 Score=77.24 Aligned_cols=70 Identities=26% Similarity=0.356 Sum_probs=58.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQ 1044 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~ 1044 (1058)
-++.+|||+|+++|||=.+.| ...|+++|||+++||-.-...++++|.++-...+.=||||||.-. .+++
T Consensus 423 YPhEFSGGQRQRIAIARAliL----kP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrA 492 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALIL----KPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRA 492 (534)
T ss_pred CCcccCcchhhHHHHHHHHhc----CCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHH
Confidence 467789999999999977765 345888999999999999999999999887667889999998864 4443
No 437
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=2.5e-05 Score=88.89 Aligned_cols=70 Identities=19% Similarity=0.065 Sum_probs=53.9
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..|+ .+.++++||||+++||+.++..+.+.|.+ .+.-||++||+........++
T Consensus 152 ~~~~LSgGq~qrv~lA~aL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 152 LMSEVAPGWKLRVLLAQALF----SNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred chhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcce
Confidence 35679999999999998776 35678899999999999998776666643 466799999987533344444
No 438
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.76 E-value=3.1e-05 Score=88.59 Aligned_cols=71 Identities=24% Similarity=0.239 Sum_probs=55.8
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
..||||||++++||=.+. .+.|+++||||+++||+.++..+.+.|.+.....+.-+|+|||+... ....+.
T Consensus 448 ~~LSgGq~qRl~lARal~----~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-~~~~d~ 518 (547)
T PRK10522 448 LKLSKGQKKRLALLLALA----EERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-FIHADR 518 (547)
T ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-HHhCCE
Confidence 358999999999886553 57899999999999999999888888876543347889999999853 333433
No 439
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.76 E-value=2.5e-05 Score=91.67 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=59.0
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcC-CCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTE-APFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~-~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..|||||++++.||-.|+. .+ ..++|||||++|||+..+..++..|.++. ..+..||+|||+... +...+++
T Consensus 484 ~~~tLSGGE~QRv~LA~aL~~---~~~~~llILDEPtagLD~~~~~~L~~~L~~L~-~~G~TVIvVeHd~~~-i~~aD~v 558 (924)
T TIGR00630 484 AAGTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHQRDNERLINTLKRLR-DLGNTVIVVEHDEET-IRAADYV 558 (924)
T ss_pred CcCcCCHHHHHHHHHHHHHhh---CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHH-HhhCCEE
Confidence 467899999999999987763 22 25889999999999999999999998885 468899999999753 3344443
No 440
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.75 E-value=2.8e-05 Score=91.79 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=55.1
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
.||||||++++||=.+. ...|+++||||+++||+.++..+.+.|.++. .+.-+|+|||+....
T Consensus 593 ~LSgGq~qri~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~ 655 (694)
T TIGR01846 593 NLSGGQRQRIAIARALV----GNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTV 655 (694)
T ss_pred CCCHHHHHHHHHHHHHH----hCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHH
Confidence 48999999999986653 5789999999999999999999999998876 788999999998543
No 441
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.75 E-value=3.1e-05 Score=88.59 Aligned_cols=60 Identities=35% Similarity=0.396 Sum_probs=52.0
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1038 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1038 (1058)
.||||||++++||=.+. .+.|++||||++++||+.+...+.+.|.+.. .+.=+|+|||+.
T Consensus 470 ~LSGGQrQRiaiARall----~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 470 RLSGGERQRLALARALL----ADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 38999999999984433 5889999999999999999999888888765 788999999973
No 442
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=4.6e-05 Score=77.44 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=40.7
Q ss_pred CCCCCCCCCCeeEEEEEEEecc---cccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 10 SGYGPQRSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 10 ~~~~~~~~~~m~i~~l~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
++.++...++..+..+.+. |+ .+.+..+.+.+| +.+|+|+|||||||++.+|.
T Consensus 3 ~~~~~~~~~~l~~~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 3 EGVQNVAQPQIKVENLNLW-YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred cCcccccceeEEEeeeEEE-eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3556666677777777663 32 246777888876 88999999999999999986
No 443
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.75 E-value=3.7e-05 Score=73.21 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=35.1
Q ss_pred CeeEEEEEEEecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHH
Q 001536 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1058)
Q Consensus 19 ~m~i~~l~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 65 (1058)
++.+..+... | .+.+.++.|.+| +.+|+|||||||||++.+|.-.
T Consensus 4 ~l~~~~l~~~-~-~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 4 VLEVRGLSVK-G-AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred EEEEeccEEE-e-eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4556666554 2 568888888886 8899999999999999998633
No 444
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.75 E-value=2.9e-05 Score=88.76 Aligned_cols=64 Identities=23% Similarity=0.270 Sum_probs=54.0
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1040 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1040 (1058)
..||||||++++||=.+ ..+.|+++||||+++||..++..+.+.|.++. ..+..+|++||+...
T Consensus 453 ~~LSgGq~qrl~lARal----l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~ith~~~~ 516 (544)
T TIGR01842 453 ATLSGGQRQRIALARAL----YGDPKLVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRPSL 516 (544)
T ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCccccCHHHHHHHHHHHHHHh-hCCCEEEEEeCCHHH
Confidence 45899999999998655 45789999999999999999998888888764 246899999999853
No 445
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.74 E-value=3e-05 Score=89.95 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=54.4
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1041 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1041 (1058)
.||||||++++||=.+. ...|++++|||+++||..++..+.+.|.+.. ++.-+|+|||+....
T Consensus 476 ~LSgGq~Qrl~laRal~----~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~~~ 538 (576)
T TIGR02204 476 TLSGGQRQRIAIARAIL----KDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLATV 538 (576)
T ss_pred cCCHHHHHHHHHHHHHH----hCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchHHH
Confidence 48999999999985543 5789999999999999999998888888876 789999999998533
No 446
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.73 E-value=5.5e-05 Score=75.48 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=34.2
Q ss_pred CCeeEEEEEEEecc-------cccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 18 GAGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 18 ~~m~i~~l~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
+++.+..|.+. |+ .+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 5 ~~l~~~~l~~~-~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 5 NIVEVHHLKKS-VGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred ceEEEeeeEEE-ccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 44566666553 21 356677888775 999999999999999999963
No 447
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.73 E-value=3e-05 Score=72.06 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=26.2
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTAL 62 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai 62 (1058)
+++..+.|.+| +.+|+||||||||||+.+|
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 46777888776 8899999999999999987
No 448
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.72 E-value=0.064 Score=53.51 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 001536 186 TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (1058)
Q Consensus 186 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 233 (1058)
..++.+...+...+.++......+...+.+.+....++.....+.+..
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v 121 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAV 121 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666665555544443
No 449
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=97.72 E-value=0.00015 Score=63.55 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=82.2
Q ss_pred CCcccccccEEecCCCChHHHHHHHHhccccceeecchhhHHHHHHHHHHhcCCCccEEEEecCCCCCCCCCCCC--CCC
Q 001536 474 PPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHML--PHT 551 (1058)
Q Consensus 474 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 551 (1058)
+++|.+++++.+ + +.|+.+++.++|..+.+++|++.+++..+...++..+.++.+|++++............. ...
T Consensus 3 gv~G~l~dli~v-~-~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~ 80 (120)
T PF06470_consen 3 GVLGRLADLIEV-D-PKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPG 80 (120)
T ss_dssp TEEEEGGGSEEE-S-GGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTT
T ss_pred CeeeeHHhceec-C-HHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCc
Confidence 578999999999 7 899999999999999999999999999999999987788888988875433221111110 224
Q ss_pred CCCchhhccccCcHHHHHHhhccCCccEEEEecChHHHHHH
Q 001536 552 KHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAV 592 (1058)
Q Consensus 552 ~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 592 (1058)
...++++.+...++.+...+. .-+++.+++++.+.+..+
T Consensus 81 ~~~~l~d~i~~~d~~~~~~~~--~llg~~~vv~~l~~A~~l 119 (120)
T PF06470_consen 81 GAGPLIDLIEFPDEEYRPALE--FLLGDVVVVDDLEEARKL 119 (120)
T ss_dssp SEEEGGGGEEESCGGGHHHHH--HHHTTEEEESSHHHHHHH
T ss_pred chHHHHHhcccCcHHHHHHHH--HHcCCEEEECCHHHHHHh
Confidence 556677777774333332221 123458889998887754
No 450
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.72 E-value=5.4e-05 Score=68.44 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.7
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+.++.|.+| +.+|+||||+||||++.+|.
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~ 47 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIA 47 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 46677888876 88899999999999999984
No 451
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.71 E-value=3.4e-05 Score=88.86 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=56.2
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.||||||++++||=.+. ...|++||||+++++|..+...+.+.|.++. ++..+|+|+|+..+... .+.|
T Consensus 465 ~LSgGQrQrlaiARall----~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlsti~~-aD~I 533 (567)
T COG1132 465 NLSGGQRQRLAIARALL----RNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLSTIKN-ADRI 533 (567)
T ss_pred cCCHHHHHHHHHHHHHh----cCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhHHHh-CCEE
Confidence 47999999999985443 4559999999999999999999999998776 67799999999854443 4444
No 452
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.70 E-value=3.6e-05 Score=87.86 Aligned_cols=70 Identities=26% Similarity=0.248 Sum_probs=54.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||..|+ .+.++++||||+++||..++..+.+.|.++ +.=||++||+........+.
T Consensus 158 ~~~~LSgGqkqrv~la~al~----~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~ 227 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLL----SKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGW 227 (552)
T ss_pred chhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCe
Confidence 45679999999999998776 467899999999999999988777777664 23689999887433333343
No 453
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.69 E-value=3.9e-05 Score=70.26 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=25.7
Q ss_pred cCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHH
Q 001536 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1058)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 65 (1058)
.+..+.+.+| +.+|+||+||||||++.+|...
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4455666665 8999999999999999999643
No 454
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=5.6e-05 Score=75.91 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=26.7
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 18 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667788775 88999999999999999996
No 455
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=6.6e-05 Score=78.90 Aligned_cols=67 Identities=28% Similarity=0.344 Sum_probs=56.0
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1045 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1045 (1058)
.||||||++++|+=.+ ....|++++||++.+||....+.++++|.+.. .+.-+|+|-|+-.+...++
T Consensus 487 ~LSGGekQrvslaRa~----lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll~~~D 553 (591)
T KOG0057|consen 487 MLSGGEKQRVSLARAF----LKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLDLLKDFD 553 (591)
T ss_pred ccccchHHHHHHHHHH----hcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecchhHhcCC
Confidence 4799999999887433 47889999999999999999999999999966 8899999999875433343
No 456
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.69 E-value=6.6e-05 Score=73.13 Aligned_cols=45 Identities=27% Similarity=0.311 Sum_probs=33.5
Q ss_pred eeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 20 m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
+.+..+... +...+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 455666554 111246778888876 899999999999999998863
No 457
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.68 E-value=6.5e-05 Score=73.30 Aligned_cols=45 Identities=24% Similarity=0.188 Sum_probs=33.0
Q ss_pred CeeEEEEEEEecc---cccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 19 ~m~i~~l~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
|..+..+.+. |+ .+.+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 2 ~l~~~~l~~~-~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 2 MLEGEDLACV-RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred EEEEEeEEEE-ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445555543 22 246777787776 889999999999999999863
No 458
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.68 E-value=4.1e-05 Score=87.42 Aligned_cols=71 Identities=28% Similarity=0.272 Sum_probs=55.3
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||++++||..|+ .+.++++||||+++||..++..+.+.|.++. + =||++||+........+.+
T Consensus 160 ~~~~LSgGqkqrv~la~al~----~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~-tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLL----EKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---G-TVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred chhhcCHHHHHHHHHHHHHh----CCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---C-eEEEEeCCHHHHHhhcCeE
Confidence 35679999999999998776 4678999999999999999887777776652 3 5889998875444444443
No 459
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.68 E-value=2.8e-05 Score=90.12 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=53.6
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||++++||.+++ .+.++++||||+.+||..++..+.+.|.++ +.-||++||+........+.
T Consensus 437 ~~~~LSgGekqRl~la~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~ 506 (635)
T PRK11147 437 PVKALSGGERNRLLLARLFL----KPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTE 506 (635)
T ss_pred hhhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCE
Confidence 45679999999999987766 367899999999999999987666666554 33699999997544444443
No 460
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=3.3e-05 Score=67.09 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=55.1
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1042 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1042 (1058)
.+..+||||++++.||=-|. ...|++.+|||++.||..||..+++++.+. +..++-++=|=|......
T Consensus 149 aPaTFSGGEqQRVNIaRgfi----vd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeevre 216 (235)
T COG4778 149 APATFSGGEQQRVNIARGFI----VDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEVRE 216 (235)
T ss_pred CCcccCCchheehhhhhhhh----ccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHHHH
Confidence 45678999999999986554 578999999999999999999988888764 357888888887764333
No 461
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.67 E-value=9.8e-05 Score=66.50 Aligned_cols=61 Identities=30% Similarity=0.360 Sum_probs=44.5
Q ss_pred ccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCC
Q 001536 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1038 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1038 (1058)
.+||||||-++-||=.||. ...|++|||||+|.||-.... ++.|+...+..+.= ++||-|+
T Consensus 138 ~sLSGGERRR~EIARaLa~----~P~fiLLDEPFAGVDPiaV~d-Iq~iI~~L~~rgiG-vLITDHN 198 (243)
T COG1137 138 YSLSGGERRRVEIARALAA----NPKFILLDEPFAGVDPIAVID-IQRIIKHLKDRGIG-VLITDHN 198 (243)
T ss_pred cccccchHHHHHHHHHHhc----CCCEEEecCCccCCCchhHHH-HHHHHHHHHhCCce-EEEcccc
Confidence 4589999999999988885 455888999999999986544 55555555445544 4556554
No 462
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=7.9e-05 Score=72.33 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=32.4
Q ss_pred eeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 20 m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
..+..+.+. +...+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 455556543 111246777888775 88999999999999999885
No 463
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=7.7e-05 Score=75.34 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=32.2
Q ss_pred eeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 20 m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
..+..|.+. +...+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 345555543 111246777888776 88999999999999999987
No 464
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00013 Score=65.30 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=27.7
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 65 (1058)
|.+..|.|.+| ...|+||||+||||++..|.-.
T Consensus 18 f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL 51 (209)
T COG4133 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL 51 (209)
T ss_pred ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc
Confidence 56777888776 8889999999999999988633
No 465
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=8.1e-05 Score=75.53 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=33.9
Q ss_pred CeeEEEEEEEecc---cccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 19 ~m~i~~l~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
++.+..|.+. |+ .+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 6 ~i~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 6 ILSTKNLNLW-YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eEEEeeeEEE-ECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4555555543 22 246777888887 899999999999999999964
No 466
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.64 E-value=0.12 Score=54.41 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001536 191 VNDLLQSIYNHLNKGDALV 209 (1058)
Q Consensus 191 ~~~~l~~~~~~l~~~~~~l 209 (1058)
+.+.+..+-+++..++..-
T Consensus 9 LNdRla~YIekVr~LE~~N 27 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQEN 27 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444333333333333
No 467
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.64 E-value=7.6e-05 Score=75.39 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=27.3
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888876 99999999999999999986
No 468
>PLN03073 ABC transporter F family; Provisional
Probab=97.64 E-value=4.4e-05 Score=88.36 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=53.2
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
++..||||||++++||..++ .+.++++||||+.+||..++..++..|..+ .+ =||++||+........+.
T Consensus 624 ~~~~LSgGqkqRvaLAraL~----~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~i~~~~dr 693 (718)
T PLN03073 624 PMYTLSGGQKSRVAFAKITF----KKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHLISGSVDE 693 (718)
T ss_pred CccccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHHHHHhCCE
Confidence 45679999999999987766 467899999999999999887766666554 34 699999887433333333
No 469
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=7.6e-05 Score=69.16 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=28.5
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHHh
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 66 (1058)
+.+..+.|.+| +++|+|+||+||||++++|...+
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46677788775 89999999999999999997544
No 470
>PRK14079 recF recombination protein F; Provisional
Probab=97.63 E-value=0.0015 Score=69.09 Aligned_cols=61 Identities=31% Similarity=0.287 Sum_probs=45.0
Q ss_pred ccCCCCchhHHHHHHHHHhh----hh-cCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccC
Q 001536 972 RGLSGGERSFSTLCFALALH----EM-TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPH 1037 (1058)
Q Consensus 972 ~~lSgGE~~~~~la~~~al~----~~-~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~ 1037 (1058)
..+|+||+-.+++++.+|-. .. ..+|+++||||+++||..++..++..|.. ..|+|+.|.+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~-----~~q~~it~t~ 327 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS-----LPQAIVAGTE 327 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc-----CCcEEEEcCC
Confidence 45799999999999999833 22 46788899999999999887555444432 2487666554
No 471
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=7.9e-05 Score=75.46 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=34.3
Q ss_pred CCeeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 18 ~~m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
+|+.++.+.+. +...+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 45566666653 112246667777775 899999999999999999963
No 472
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.62 E-value=8.7e-05 Score=73.21 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=32.0
Q ss_pred eeEEEEEEEe---cccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 20 GTITRVRLEN---FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 20 m~i~~l~l~n---f~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
..++.+.+.- ..-+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455555431 11246677888776 88999999999999999986
No 473
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.62 E-value=0.033 Score=49.31 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001536 279 CQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISL 327 (1058)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (1058)
.....+.+...+..++......+.+|..+......++..+..+...+..
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443333333333333333
No 474
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=9.6e-05 Score=68.50 Aligned_cols=62 Identities=27% Similarity=0.337 Sum_probs=49.6
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1039 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1039 (1058)
.+|||||-+.=|+=++.+ ..-|.||||+|+|+|-..-+.+.+-+..+. +.++=+|+|||...
T Consensus 144 GFSGGEkKR~EilQ~~~l----ePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~~~liITHy~r 205 (251)
T COG0396 144 GFSGGEKKRNEILQLLLL----EPKLAILDEPDSGLDIDALKIVAEGINALR-EEGRGVLIITHYQR 205 (251)
T ss_pred CcCcchHHHHHHHHHHhc----CCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCCeEEEEecHHH
Confidence 379999999988754443 344788999999999998777777666664 78899999999973
No 475
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=6e-05 Score=74.11 Aligned_cols=31 Identities=26% Similarity=0.487 Sum_probs=28.0
Q ss_pred ccCceeeeCCCeEEEEcCCCCcHHHHHHHHH
Q 001536 33 HSSLQIELGEWVNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 33 ~~~~~i~f~~~~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+..+.+.+|+.+|+|||||||||++.+|.
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHh
Confidence 5677888888988999999999999999996
No 476
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.61 E-value=9.6e-05 Score=75.43 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=27.1
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 36 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45677788776 899999999999999999853
No 477
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=9.2e-05 Score=73.31 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=27.1
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888775 88999999999999999986
No 478
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=8.8e-05 Score=75.19 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=31.7
Q ss_pred eeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 20 m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
..+..+... +...+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN 50 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 445555442 111246677788776 88999999999999999986
No 479
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.61 E-value=0.00012 Score=72.82 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=37.3
Q ss_pred CCCCeeEEEEEEEe-----cccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 16 RSGAGTITRVRLEN-----FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 16 ~~~~m~i~~l~l~n-----f~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
..+++.+..+.+.- ...+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34557778887751 12357778888776 889999999999999999963
No 480
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.60 E-value=5.8e-05 Score=87.57 Aligned_cols=70 Identities=23% Similarity=0.175 Sum_probs=54.1
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.+..||||||.+++||-+|+ .+.++++||||+.+||...+..+.+.|.++ ..-||++||+........+.
T Consensus 153 ~~~~LSgGekqRv~LAraL~----~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALV----SNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred chhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCe
Confidence 46779999999999998776 367899999999999999987766666664 24799999887533333443
No 481
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.60 E-value=4.5e-05 Score=69.00 Aligned_cols=29 Identities=41% Similarity=0.627 Sum_probs=24.5
Q ss_pred CceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+..+.|.+| +.+|+|+||||||||+.+|.
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHT
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeec
Confidence 456677665 99999999999999999875
No 482
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.60 E-value=0.00011 Score=73.93 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.3
Q ss_pred CCeeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 18 ~~m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+++.|..|.+. +..-+.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44666666654 111246677888776 99999999999999999987
No 483
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=8.1e-05 Score=81.47 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=53.8
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1045 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1045 (1058)
.||||+|+++|||=.| +...+++||||++.+||..+...+=+.|-+.. +++-||+|.|+-.+...++
T Consensus 604 qLSGGQKQRIAIARAL----lr~P~VLILDEATSALDaeSE~lVq~aL~~~~--~~rTVlvIAHRLSTV~~Ad 670 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARAL----LRNPRVLILDEATSALDAESEYLVQEALDRLM--QGRTVLVIAHRLSTVRHAD 670 (716)
T ss_pred cccchHHHHHHHHHHH----hcCCCEEEEechhhhcchhhHHHHHHHHHHhh--cCCeEEEEehhhhHhhhcc
Confidence 4799999999998544 46777889999999999998776666666766 7799999999986555444
No 484
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=9.4e-05 Score=74.98 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=32.7
Q ss_pred CeeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 19 ~m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
|..|..+.+. +...+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445555543 111246667777776 889999999999999999873
No 485
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.59 E-value=0.0001 Score=72.75 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=27.3
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888776 88999999999999999996
No 486
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.59 E-value=0.00011 Score=74.81 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=32.5
Q ss_pred CeeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 19 ~m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
+..+..+... +...+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445555443 111246667788776 889999999999999999963
No 487
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.59 E-value=5.8e-05 Score=95.56 Aligned_cols=73 Identities=27% Similarity=0.344 Sum_probs=59.5
Q ss_pred CCccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCCe
Q 001536 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1048 (1058)
Q Consensus 970 ~~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1048 (1058)
.+..||||||.+++||..|+ .+.+++++|||++|||+..++.+.+.|.++. .+.-||++||+........+++
T Consensus 1058 ~~~~LSGGqKQRLsLArALi----~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdmdea~~laDrI 1130 (2272)
T TIGR01257 1058 EAQDLSGGMQRKLSVAIAFV----GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHMDEADLLGDRI 1130 (2272)
T ss_pred ChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEE
Confidence 45779999999999998776 3678889999999999999999999999985 5788999998864333344444
No 488
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.58 E-value=0.00011 Score=72.54 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=27.2
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46677788775 889999999999999999873
No 489
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.58 E-value=0.0001 Score=73.90 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=27.1
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+.++.|.+| +.+|+|||||||||++.+|.
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888776 88899999999999999986
No 490
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.58 E-value=9e-05 Score=74.49 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=26.3
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+.++.|.+| +.+|+|||||||||++.+|.
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 35667777775 89999999999999999986
No 491
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00011 Score=75.31 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=32.2
Q ss_pred eeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 20 m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
..+..|... +...+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLS 48 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 345555443 111246777888876 89999999999999999886
No 492
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00011 Score=75.05 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=36.1
Q ss_pred CCCeeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHHH
Q 001536 17 SGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1058)
Q Consensus 17 ~~~m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 65 (1058)
.+++.++.|.+. +-..+.+..+.|.+| +.+|+|+||||||||+.+|.-.
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 445667777663 111246677788776 9999999999999999999743
No 493
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.56 E-value=0.21 Score=55.13 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 001536 873 SIEDLRMLYEEKEHKILRKQ 892 (1058)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~l~ 892 (1058)
+|+.++.+...-..++..+.
T Consensus 484 e~emlKaen~rqakkiefmk 503 (1265)
T KOG0976|consen 484 EYEMLKAENERQAKKIEFMK 503 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333333333
No 494
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00012 Score=73.30 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=34.4
Q ss_pred CeeEEEEEEEecc-------cccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 19 ~m~i~~l~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
++.+..+... |. .+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 5 ~l~~~~l~~~-~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 5 LLQCDNLCKR-YQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred eEEEEeEEEE-cCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4667777654 21 246667788776 899999999999999999973
No 495
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00013 Score=74.44 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=34.9
Q ss_pred CeeEEEEEEEecc---cccCceeeeCCC-eEEEEcCCCCcHHHHHHHHHH
Q 001536 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1058)
Q Consensus 19 ~m~i~~l~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 64 (1058)
++.|..+.+. |+ .+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 10 ~l~i~~v~~~-~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 10 VLRTENLNVY-YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred EEEEeeeEEE-ECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4667777653 32 246778888776 889999999999999999974
No 496
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.56 E-value=7.3e-05 Score=88.35 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=53.3
Q ss_pred cCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCCCCC
Q 001536 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1047 (1058)
Q Consensus 973 ~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1047 (1058)
.||||||++++||=.+. ...|+++||||+++||+.+...+.+.|.+. +.-+|+|||+..+. ...+.
T Consensus 588 ~LSGGQrQRialARAll----~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i-~~~D~ 653 (686)
T TIGR03797 588 TLSGGQRQRLLIARALV----RKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTI-RNADR 653 (686)
T ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHH-HcCCE
Confidence 48999999999885543 577999999999999999998888888764 46899999998543 33444
No 497
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.56 E-value=0.0001 Score=86.92 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=55.6
Q ss_pred CccCCCCchhHHHHHHHHHhhhhcCCCeeeechhhhccChhhHHHHHHHHHHHHhcCCcEEEEEccCCCC
Q 001536 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1040 (1058)
Q Consensus 971 ~~~lSgGE~~~~~la~~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1040 (1058)
+..|||||++++.||..|+.. ..+.+++|||||++|||...+..+.+.|.++. ..+.-||++||+...
T Consensus 828 ~~tLSgGEkQRl~LAraL~~~-p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~-~~G~TVIiitH~~~~ 895 (943)
T PRK00349 828 ATTLSGGEAQRVKLAKELSKR-STGKTLYILDEPTTGLHFEDIRKLLEVLHRLV-DKGNTVVVIEHNLDV 895 (943)
T ss_pred cccCCHHHHHHHHHHHHHhcC-CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHH
Confidence 456999999999999887622 22237999999999999999988888888875 457899999999853
No 498
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00013 Score=74.08 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=33.5
Q ss_pred CeeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 19 ~m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
++.+..|.+. +..-+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455566553 222346777888776 99999999999999999996
No 499
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00011 Score=72.08 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=27.2
Q ss_pred ccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677888876 78899999999999999997
No 500
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=0.00013 Score=75.14 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCeeEEEEEEE--ecccccCceeeeCCC-eEEEEcCCCCcHHHHHHHHH
Q 001536 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1058)
Q Consensus 18 ~~m~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 63 (1058)
++..+..|.+. +...+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 38 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~ 86 (286)
T PRK14275 38 PHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAIN 86 (286)
T ss_pred eEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33445555443 111245667777776 88999999999999999996
Done!