Query 001536
Match_columns 1058
No_of_seqs 422 out of 2821
Neff 11.5
Searched_HMMs 29240
Date Tue Mar 26 17:35:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001536.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_835-839//hhsearch_pdb/001536hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qks_A DNA double-strand break 1.0 1 1 180.1 16.3 180 20-215 1-190 (203)
2 3auy_A DNA double-strand break 1.0 1 1 174.4 27.8 140 18-174 1-145 (371)
3 1w1w_A Structural maintenance 1.0 1 1 164.2 17.2 140 19-174 1-162 (430)
4 4ad8_A DNA repair protein RECN 1.0 1 1 163.1 27.2 109 20-150 38-148 (517)
5 3kta_A Chromosome segregation 1.0 1 1 159.1 18.3 164 19-192 1-173 (182)
6 1f2t_A RAD50 ABC-ATPase; DNA d 1.0 1 1 157.5 11.9 139 20-171 1-148 (149)
7 1e69_A Chromosome segregation 1.0 1 1 150.3 15.1 139 20-174 1-147 (322)
8 3qkt_A DNA double-strand break 1.0 1 1 147.7 13.9 141 20-172 1-149 (339)
9 3kta_B Chromosome segregation 1.0 1 1 136.4 9.5 134 911-1052 4-141 (173)
10 3qf7_A RAD50; ABC-ATPase, ATPa 1.0 1 1 133.3 21.7 144 20-174 1-153 (365)
No 1
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=1.00 E-value=1 Score=180.14 Aligned_cols=180 Identities=19% Similarity=0.286 Sum_probs=132.2
Q ss_pred EEEEEEEEEECCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 05879999812333573356179748998599996789999999870587567777654124321398236999999817
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|.|.||++|.+.+|+|++|+|+|+||||+|||||++||.|+||+.+. .|+.+..++++.+...+.|++.|.++
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~~--~r~~~~~~~i~~~~~~~~v~l~f~~~ 78 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (203)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHTTSC--CTTCCHHHHHTSCSSCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHHHHCCCCCCEEEEEEEEEC
T ss_conf 9799999988767156299818981899928999889999999999649855--65666123330689848999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEEC-C---CCE--EEEECCCCC---EECCCHHHHHHHHHHC-CCCCCCCEEEECHHHHHHH
Q ss_conf 9876675567991899998736-8---663--899758995---1014388999998754-8766688356320236672
Q 001536 100 GEDAFKPEIFGDSIIIERRITE-S---TST--TVLKDHQGK---RVASRKQELLELIDHF-NIDVENPCVIMSQDKSREF 169 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~-~---~~~--~~~~~~~g~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~ 169 (1058)
|..|+|.|.+.. + .+. +++. +|. ....+..++.+.+..+ +.+.+...++++|+++..|
T Consensus 79 ----------~~~~~i~R~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~v~~~i~~ll~~~~f~~~~~l~Qg~~~~~ 146 (203)
T 3qks_A 79 ----------GTKYRITRRFLKGYSSGEIHAMKRLV--GNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAI 146 (203)
T ss_dssp ----------TEEEEEEEEEECSSSCEEEEEEEEEE--TTEEEESSCSSHHHHHHHHHHHSCHHHHHHTTEECTTHHHHH
T ss_pred ----------CEEEEEEEEEECCCCCCCCCEEEEEC--CCCEEEECCCCHHHHHHHHHHHCCHHHHHEEEEECCCCHHHH
T ss_conf ----------99999999997689877653599972--896655034776899999999739878127889958757878
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0049903489999966429999999999999999889999999973
Q 001536 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEAT 215 (1058)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 215 (1058)
+... .++..++.....+..+......+.+.+......+.+++..
T Consensus 147 l~~~--~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 190 (203)
T 3qks_A 147 LESD--EAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDI 190 (203)
T ss_dssp HHCH--HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCC--HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7493--9999999999797899999999999999999999999998
No 2
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=1.00 E-value=1 Score=174.38 Aligned_cols=140 Identities=21% Similarity=0.305 Sum_probs=105.9
Q ss_pred CCEEEEEEEEEECCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEE
Q ss_conf 88058799998123335733561797489985999967899999998705875677776541243213982369999998
Q 001536 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (1058)
Q Consensus 18 ~~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~ 97 (1058)
|||+|.+|.|.||++|...+|+|+||+|+|+|+||+|||||+|||+|+++|.. |+....++++.|...+.|+++|.
T Consensus 1 m~M~l~~L~l~nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~~----r~~~~~~~ir~g~~~~~V~~~f~ 76 (371)
T 3auy_A 1 MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAG----SNFNYDTIITKGKKSVYVELDFE 76 (371)
T ss_dssp CCEEEEEEEEEEETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHHHHHCCC-----CCCTTTTBCTTCSEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHCCCCCCCEEEEEEEE
T ss_conf 98478699998611536659836998499999999988999999999982998----75556765118998389999999
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEECCC--CEEEEECCCCCEECCCHHHHHHHHHH-CCCCC--CCCEEEECHHHHHHHHHC
Q ss_conf 17987667556799189999873686--63899758995101438899999875-48766--688356320236672004
Q 001536 98 NRGEDAFKPEIFGDSIIIERRITEST--STTVLKDHQGKRVASRKQELLELIDH-FNIDV--ENPCVIMSQDKSREFLHS 172 (1058)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~q~~~~~~l~~ 172 (1058)
.++ ..|.|.|.+..+. ..+++ +|..++....++...+.. +|++. +.++++++|++...++..
T Consensus 77 ~~~----------~~~~i~r~~~~g~~~~~~~~---ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~ 143 (371)
T 3auy_A 77 VNG----------NNYKIIREYDSGRGGAKLYK---NGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSL 143 (371)
T ss_dssp ETT----------EEEEEEEEEETTEEEEEEEE---TTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHS
T ss_pred ECC----------EEEEEEEEECCCCCCEEEEE---CCEEECCCHHHHHHHHHHHHCCCHHHHCCEEEECCCCHHHHHHC
T ss_conf 899----------99999999768998539998---99861164789999999986959899474326617307998735
Q ss_pred CC
Q ss_conf 99
Q 001536 173 GN 174 (1058)
Q Consensus 173 ~~ 174 (1058)
.+
T Consensus 144 ~~ 145 (371)
T 3auy_A 144 KP 145 (371)
T ss_dssp CH
T ss_pred CH
T ss_conf 98
No 3
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=164.18 Aligned_cols=140 Identities=23% Similarity=0.367 Sum_probs=108.7
Q ss_pred CEEEEEEEEEECCCCCCC-EEEEC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCC--------
Q ss_conf 805879999812333573-35617-97489985999967899999998705875677776541243213982--------
Q 001536 19 AGTITRVRLENFMCHSSL-QIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS-------- 88 (1058)
Q Consensus 19 ~m~i~~l~l~nf~~~~~~-~i~f~-~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~-------- 88 (1058)
||+|.+|.+.||++|++. .++|. +++++|+||||+|||||++||.|++++.+. ..|+....++|+.|..
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~-~~R~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN-HLRSNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred CCEEEEEEEECEEEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9715899995889989940577569978999999988899999999845342434-401445899996488664025872
Q ss_pred -----------EEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCEECCCHHHHHHHHHHCCCCCCC
Q ss_conf -----------36999999817987667556799189999873-686638997589951014388999998754876668
Q 001536 89 -----------YAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVEN 156 (1058)
Q Consensus 89 -----------~~~v~~~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 156 (1058)
.+.|.+.|..+ +..+.|.|.+. ++.+.|++ ||..+ +..++..++...++....
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~----------~~~~~i~r~~~~~~~~~~~i---ng~~~--~~~~~~~~~~~~~i~~~~ 144 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQKG----------NKLVELMRIISRNGDTSYKI---DGKTV--SYKDYSIFLENENILIKA 144 (430)
T ss_dssp ---------CCEEEEEEEEEET----------TEEEEEEEEEETTSCEEEEE---TTEEE--CHHHHHHHHHHTTCCTTT
T ss_pred CCCCCCCCCCCCCCCEEEECCC----------CCEEEEEEEEECCCCEEEEE---CCEEC--CHHHHHHHHHHCCCCCCC
T ss_conf 2666656776311110342168----------82799999996699569999---99886--499999999857958787
Q ss_pred CEEEECHHHHHHHHHCCC
Q ss_conf 835632023667200499
Q 001536 157 PCVIMSQDKSREFLHSGN 174 (1058)
Q Consensus 157 ~~~~~~q~~~~~~l~~~~ 174 (1058)
..+++.|++...++...+
T Consensus 145 ~~~~i~qg~~~~l~~~~p 162 (430)
T 1w1w_A 145 KNFLVFQGDVEQIAAQSP 162 (430)
T ss_dssp CTTEECTTCTTHHHHSCH
T ss_pred CCEEEEHHHHHHHHHCCH
T ss_conf 200466575999985899
No 4
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=163.11 Aligned_cols=109 Identities=28% Similarity=0.404 Sum_probs=91.8
Q ss_pred EEEEEEEEEECCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEE-EE
Q ss_conf 05879999812333573356179748998599996789999999870587567777654124321398236999999-81
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL-KN 98 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~-~~ 98 (1058)
|+|.+|.|.||++|.+.+|+|++|+|+|+|+|||||||||+||.|++|+++. .++|+.|...+.|++.| ..
T Consensus 38 M~l~~L~i~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~--------~~~i~~g~~~a~v~~~f~~~ 109 (517)
T 4ad8_A 38 PRLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN--------HDLIRSGEKELLVTGFWGDG 109 (517)
T ss_dssp CCCCEEEEESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC--------GGGBCTTCSEEEEEEEC---
T ss_pred CEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCH--------HHHHCCCCCCEEEEEEEEEC
T ss_conf 6642360016166301799538980799859998789999999987367768--------99821899738999999854
Q ss_pred CCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCEECCCHHHHHHHHHHC
Q ss_conf 7987667556799189999873-686638997589951014388999998754
Q 001536 99 RGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHF 150 (1058)
Q Consensus 99 ~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 150 (1058)
.+ +..+.+.|.+. .+.+.+++ +|..++ ...+.++...+
T Consensus 110 ~~---------~~~~~i~r~~~~~g~~~~~i---ng~~v~--~~~l~~~~~~l 148 (517)
T 4ad8_A 110 DE---------SEADSASRRLSSAGRGAARL---SGEVVS--VRELQEWAQGR 148 (517)
T ss_dssp --------------CEEEEEEETTSCCEEES---SSSBCC--HHHHHHHHTTT
T ss_pred CC---------CCEEEEEEEEECCCCCEEEE---CCEECC--HHHHHHHHHHH
T ss_conf 89---------97699999996388838999---999887--99999996310
No 5
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=1.00 E-value=1 Score=159.11 Aligned_cols=164 Identities=24% Similarity=0.378 Sum_probs=126.5
Q ss_pred CEEEEEEEEEECCCC--CCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC------CEE
Q ss_conf 805879999812333--573356179748998599996789999999870587567777654124321398------236
Q 001536 19 AGTITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYA 90 (1058)
Q Consensus 19 ~m~i~~l~l~nf~~~--~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~------~~~ 90 (1058)
||+|.+|.|.||++| .+.+++|.+|+|+|+||||+|||||++||.|+|++......|+....++++.+. ..+
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred CCEEEEEEEECEEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCCEE
T ss_conf 95689999958486537628996589828999999997899999999997687422345432000366466667777359
Q ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCEECCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHH
Q ss_conf 999999817987667556799189999873-6866389975899510143889999987548766688356320236672
Q 001536 91 MVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (1058)
Q Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (1058)
.|.+.|.+.+.. + ...+..++|.|.+. .+...|++ +|..+ ...++.+++..++++..++ .+++|++...+
T Consensus 81 ~v~~~f~~~~~~-~--~~~~~~~~i~r~~~~~~~~~~~i---~g~~~--~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l 151 (182)
T 3kta_A 81 EVAIYFNNEDRG-F--PIDEDEVVIRRRVYPDGRSSYWL---NGRRA--TRSEILDILTAAMISPDGY-NIVLQGDITKF 151 (182)
T ss_dssp EEEEEEECTTCC-S--SSSSSEEEEEEEECTTSCEEEEE---TTEEE--CHHHHHHHHHHTTCCTTCT-TEECTTCTTHH
T ss_pred EEEEEEECCCCC-C--CCCCCEEEEEEEEEECCCEEEEE---CCEEC--CHHHHHHHHHHCCCCCCCC-EEEECCCHHHH
T ss_conf 999999578765-4--56786899999999589579999---99586--8999999999859997887-79975218899
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 00499034899999664299999
Q 001536 170 LHSGNDKDKFKFFFKATLLQQVN 192 (1058)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~ 192 (1058)
+...+ ..+..++.....+..+.
T Consensus 152 ~~~~~-~~r~~~ld~~~g~~~~~ 173 (182)
T 3kta_A 152 IKMSP-LERRLLIDDISGIAEYD 173 (182)
T ss_dssp HHSCH-HHHHHHHHHHHTC----
T ss_pred HHCCH-HHHHHHHHHHHCHHHHH
T ss_conf 82799-99999999987858899
No 6
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=1.00 E-value=1 Score=157.51 Aligned_cols=139 Identities=24% Similarity=0.389 Sum_probs=104.9
Q ss_pred EEEEEEEEEECCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 05879999812333573356179748998599996789999999870587567777654124321398236999999817
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|.+.||++|.+.+|+|++|+|+|+||||+|||||++||.|+|++... .|.....++++.|...+.|+++|..+
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~--~r~~~~~~~~~~~~~~~~v~~~f~~~ 78 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (149)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSC--CTTSSCCCSCSTTCCCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHEECCCCCEEEEEEEEEC
T ss_conf 9787999968534866599728976999988999889999999999759854--45588788500699748999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEEC-C-CCEEEE-EC--CCC-CEECCCH-HHHHHHHHHCCCCCCC--CEEEECHHHHHHHH
Q ss_conf 9876675567991899998736-8-663899-75--899-5101438-8999998754876668--83563202366720
Q 001536 100 GEDAFKPEIFGDSIIIERRITE-S-TSTTVL-KD--HQG-KRVASRK-QELLELIDHFNIDVEN--PCVIMSQDKSREFL 170 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~-~-~~~~~~-~~--~~g-~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l 170 (1058)
+..|+|.|.+.. + .+.++. .+ ..+ ..+..+. .++.+.+..+ ++... ..++++|+++..|+
T Consensus 79 ----------~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~QG~~~~~l 147 (149)
T 1f2t_A 79 ----------GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAIL 147 (149)
T ss_dssp ----------TEEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECTTHHHHHT
T ss_pred ----------CEEEEEEEEECCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHH-CCHHHHHHEEEECCCCHHHHH
T ss_conf ----------999999999867888438999752689733783447668999999997-699885316898075798795
Q ss_pred H
Q ss_conf 0
Q 001536 171 H 171 (1058)
Q Consensus 171 ~ 171 (1058)
.
T Consensus 148 ~ 148 (149)
T 1f2t_A 148 E 148 (149)
T ss_dssp C
T ss_pred H
T ss_conf 3
No 7
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=150.30 Aligned_cols=139 Identities=26% Similarity=0.393 Sum_probs=111.8
Q ss_pred EEEEEEEEEECCCC-CCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC------CEEEE
Q ss_conf 05879999812333-573356179748998599996789999999870587567777654124321398------23699
Q 001536 20 GTITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYAMV 92 (1058)
Q Consensus 20 m~i~~l~l~nf~~~-~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~------~~~~v 92 (1058)
|+|.+|.+.||++| +..+|+|++|+|+|+|+||||||||++||.|++|.......|+....++++.|. ..+.|
T Consensus 1 M~l~~L~i~nfr~~~~~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v 80 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYV 80 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEE
T ss_pred CEEEEEEEECCEEECCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCCEEEE
T ss_conf 95759999493521697688569992899999999679999999998688840000202588760267667888861899
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCEECCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHH
Q ss_conf 9999817987667556799189999873-686638997589951014388999998754876668835632023667200
Q 001536 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1058)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1058)
++.|.+.+ ..+.+.|.+. .+.+.|++ +|..+ +..++...+...++... .+.++.|+.+..++.
T Consensus 81 ~~~f~~~~----------~~~~i~r~~~~~~~~~~~i---ng~~~--~~~~~~~~~~~~g~~~~-~~~lv~qg~i~~~~~ 144 (322)
T 1e69_A 81 ELVFEENG----------EEITVARELKRTGENTYYL---NGSPV--RLKDIRDRFAGTGLGVD-FYSIVGQGQIDRIVN 144 (322)
T ss_dssp EEEEESSS----------CEEEEEEEEETTSCEEEEE---TTEEE--CHHHHHHHTTTSSTTTT-CCSEEEHHHHHHHHT
T ss_pred EEEEEECC----------EEEEEEEEEECCCCEEEEE---CCCCC--CHHHHHHHHHHCCCCHH-HEEEEEHHHHHHHHH
T ss_conf 99999399----------2999999998699638999---99083--49999999998399804-606674564999986
Q ss_pred CCC
Q ss_conf 499
Q 001536 172 SGN 174 (1058)
Q Consensus 172 ~~~ 174 (1058)
..+
T Consensus 145 ~~p 147 (322)
T 1e69_A 145 ASP 147 (322)
T ss_dssp C--
T ss_pred CCH
T ss_conf 668
No 8
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=1.00 E-value=1 Score=147.72 Aligned_cols=141 Identities=21% Similarity=0.350 Sum_probs=97.8
Q ss_pred EEEEEEEEEECCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 05879999812333573356179748998599996789999999870587567777654124321398236999999817
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|++|++.||++|.+.+++|+||+|+|+||||+|||||+|||+|+|++... .++.+..++++.|...++|.+.|..+
T Consensus 1 M~i~~l~l~nF~~~~~~~i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (339)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCC--CTTCCHHHHBCTTCSEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHHCCCCCEEEEEEEEEEC
T ss_conf 9679999976217557177279983899999999789999999999648756--67677778861789808999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEECC---CC-EEEEECCCCCEEC---CCHHHHHHHHHH-CCCCCCCCEEEECHHHHHHHHH
Q ss_conf 98766755679918999987368---66-3899758995101---438899999875-4876668835632023667200
Q 001536 100 GEDAFKPEIFGDSIIIERRITES---TS-TTVLKDHQGKRVA---SRKQELLELIDH-FNIDVENPCVIMSQDKSREFLH 171 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~---~~-~~~~~~~~g~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~ 171 (1058)
+ ..|.|.|.+..+ +. .+.....++.... .....+...+.. ++.+.+...++++|+.+..++.
T Consensus 79 ~----------~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~~~~~i~Qg~~~~il~ 148 (339)
T 3qkt_A 79 G----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE 148 (339)
T ss_dssp T----------EEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHHTEECTTCTTGGGS
T ss_pred C----------EEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHEEECCHHHHHHHH
T ss_conf 9----------999999998547778864378994288255423331678999999863978765425861212999872
Q ss_pred C
Q ss_conf 4
Q 001536 172 S 172 (1058)
Q Consensus 172 ~ 172 (1058)
.
T Consensus 149 ~ 149 (339)
T 3qkt_A 149 S 149 (339)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 9
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=1.00 E-value=1 Score=136.37 Aligned_cols=134 Identities=26% Similarity=0.394 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999999999999999999974530495013751036----6506899842799898755678668887026999999
Q 001536 911 SRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYE----EKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCF 986 (1058)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~~----~~~~~i~v~~~~~~~~~~~~~~~~lSgGEr~~~~la~ 986 (1058)
++...|...|..+...|...|..+++ |+.+.+.+... .+++.+.+.+ +++....+..||||||++++||+
T Consensus 4 ~~~~~f~~~f~~i~~~f~~~f~~L~~--~g~~~l~l~~~~~~~~~gl~i~~~~----~~~~~~~~~~LSgGekqr~ala~ 77 (173)
T 3kta_B 4 EKKNVFMRTFEAISRNFSEIFAKLSP--GGSARLILENPEDPFSGGLEIEAKP----AGKDVKRIEAMSGGEKALTALAF 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHST--TCEEEEEESCSSSGGGSCEEEEEET----TSSSCCCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCCCEEEECC----CCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999999998589--9879999607987433685699638----98441633009999999999999
Q ss_pred HHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 999612128980140110000370458979999999986189579997048888877899702885
Q 001536 987 ALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1052 (1058)
Q Consensus 987 ~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1052 (1058)
.|++..+.+.||++||||+++||+.++..+...|.++. .+.|+|+|||+...+..++..++|..
T Consensus 78 ~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~--~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 78 VFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS--KESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred HHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEECHHHHHHCCEEEEEEE
T ss_conf 99854557998999779865789999999999999866--69989999936899986999999995
No 10
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=1.00 E-value=1 Score=133.34 Aligned_cols=144 Identities=18% Similarity=0.187 Sum_probs=100.1
Q ss_pred EEEEEEEEEECCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 05879999812333573356179748998599996789999999870587567777654124321398236999999817
Q 001536 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1058)
Q Consensus 20 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~v~~~~~~~ 99 (1058)
|+|.+|.+.||++|.+.+|+|.+|+++|+||||||||||++||+|+|+|...+... ..-...++.+...+.|.+.|..+
T Consensus 1 M~~~~l~~~~f~~~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~~-~~~~~~~~~~~~~~~v~~~f~~~ 79 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPN-SYDYVNRNAVDGTARLVFQFERG 79 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCSS-GGGGBCTTCTTCEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-CCHHHHCCCCCCCEEEEEEEEEC
T ss_conf 95489999676686661783489869999999997899999999996688655567-50455414788738999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEEC--CCCE--EEEECCCCCEE--CCCHHHHHH-HHHHCCCCC--CCCEEEECHHHHHHHH
Q ss_conf 9876675567991899998736--8663--89975899510--143889999-987548766--6883563202366720
Q 001536 100 GEDAFKPEIFGDSIIIERRITE--STST--TVLKDHQGKRV--ASRKQELLE-LIDHFNIDV--ENPCVIMSQDKSREFL 170 (1058)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~--~~~~--~~~~~~~g~~~--~~~~~~~~~-~~~~~~~~~--~~~~~~~~q~~~~~~l 170 (1058)
|..|.|.|.+.. +... .+-...+|... .....++.. +...+|++. +..+.+++|+.+..|+
T Consensus 80 ----------g~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~~l 149 (365)
T 3qf7_A 80 ----------GKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLL 149 (365)
T ss_dssp ----------TEEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTTTT
T ss_pred ----------CEEEEEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCHHHHH
T ss_conf ----------9899999998526788760799983799366513676889999999979999994568997332249898
Q ss_pred HCCC
Q ss_conf 0499
Q 001536 171 HSGN 174 (1058)
Q Consensus 171 ~~~~ 174 (1058)
...+
T Consensus 150 ~~~~ 153 (365)
T 3qf7_A 150 ISPP 153 (365)
T ss_dssp TSCH
T ss_pred HCCH
T ss_conf 5392
Done!