Query 001537
Match_columns 1057
No_of_seqs 132 out of 821
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 15:48:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001537.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_840-843//hhsearch_pdb/001537hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jqo_A Phosphoenolpyruvate car 1.0 1 1 2156.0 95.0 896 12-1057 29-970 (970)
2 1jqn_A Pepcase, PEPC, phosphoe 1.0 1 1 2122.4 92.5 872 14-1057 5-883 (883)
3 3odm_A Pepcase, PEPC, phosphoe 1.0 1 1 524.0 14.4 357 628-1027 136-526 (560)
4 1e0t_A Pyruvate kinase, PK; ph 1.0 1 1 33.5 9.9 116 618-770 175-291 (470)
5 1a3w_A Pyruvate kinase; allost 1.0 1 1 32.9 8.1 113 621-770 199-311 (500)
6 1sgj_A Citrate lyase, beta sub 1.0 1 1 31.8 5.3 102 632-763 94-197 (284)
7 3gr4_A Pyruvate kinase isozyme 1.0 1 1 31.7 8.6 121 610-770 240-360 (550)
8 3qll_A Citrate lyase; beta bar 1.0 1 1 31.0 6.2 127 600-759 102-228 (316)
9 3khd_A Pyruvate kinase; malari 1.0 1 1 30.3 6.3 122 610-770 214-335 (520)
10 3qtg_A Pyruvate kinase, PK; TI 1.0 1 1 29.5 6.7 125 610-772 179-303 (461)
No 1
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
Probab=1.00 E-value=1 Score=2156.04 Aligned_cols=896 Identities=44% Similarity=0.773 Sum_probs=832.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99331899999999999999965219069999999999989743321048600389999999999805999999999999
Q 001537 12 ISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARA 91 (1057)
Q Consensus 12 ~~~~~l~~dv~lLg~lLg~vi~~~~g~~~~~~ve~ir~~~~~~~~~r~~~~~~~~~~~~~~l~~~i~~L~~~~~~~laRA 91 (1057)
..+.+|++||++||++||+||++++|+++|++||++|.+++.. ++.++..+ .++|.+.+.+|+++++..|+||
T Consensus 29 ~~~~~Lr~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~ls~~~---~r~~~~~~----~~~l~~~l~~L~~~~~~~v~RA 101 (970)
T 1jqo_A 29 SEDDKLIEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADY---EGKGDTTK----LGELGAKLTGLAPADAILVASS 101 (970)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHHCCTHH----HHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---HHCCCCHH----HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8548899999999999999999856899999999999998886---53367146----9999998845999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC------------CCCCCHHHHHHHH-HHCCCCHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 999997996998789999732103------------8976299999999-968999788999971264047550699864
Q 001537 92 FSHYLNLMGIAETHHRVRKSRNVA------------HLSKSCDDIFSKL-VQGGISPDELYDTVCKQEVEIVLTAHPTQI 158 (1057)
Q Consensus 92 Fs~~f~L~NlAEe~~r~r~~r~~~------------~~~~sl~~~~~~L-~~~gis~~~i~~~L~~~~v~pVlTAHPTE~ 158 (1057)
||+||||+|||||+|++|++|... ...+||..++.+| ++.|+++++|++.|+++.|+|||||||||+
T Consensus 102 Fs~~~~L~NiAEe~~~~r~~r~~~~~~~~~~~~~~~~~~~sl~~~~~~L~~~~g~~~~~i~~~L~~~~v~pVlTAHPTE~ 181 (970)
T 1jqo_A 102 ILHMLNLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQS 181 (970)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHTTSCCCHHHHHHHHHTCEEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 99999999999999999999887530266533346898543999999999872999999999995490256651698625
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31249999999999872229999996889999999999999970668223689993998999999998868867799999
Q 001537 159 NRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLR 238 (1057)
Q Consensus 159 ~RrTvl~~~~rI~~lL~~~d~~~l~~~e~~~~~~~L~~~I~~LW~TdeiR~~kPtv~DE~~~gL~y~~~sl~~aiP~l~~ 238 (1057)
+||||++||++|+++|.++++.++++.|++++.++|+++|+.||||||||+.||||.||++|||+||++|||++||++|+
T Consensus 182 ~RrTvl~k~~~I~~lL~~l~~~~lt~~e~~~~~~~L~~~I~~lW~TdeiR~~kPtv~DE~~~gl~y~~~sl~~avP~~~r 261 (970)
T 1jqo_A 182 ARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLR 261 (970)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 28989999999999999976578987899999999999999984872421669884999999999999879999999999
Q ss_pred HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 9999998711-999999889831145556789899878979999999999999999999999999965034546378888
Q 001537 239 RVSNALKKHT-GKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSR 317 (1057)
Q Consensus 239 ~l~~al~~~~-g~~~~~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~a~~~Y~~~l~~L~~~LS~s~~s~~l~~ 317 (1057)
++++++.++| +..+|+..+||+|||||||||||||||||+||++|+.++|++++++|++++++|+++||+|.||+++.+
T Consensus 262 ~l~~al~~~~~~~~l~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~~eLS~s~~s~eL~~ 341 (970)
T 1jqo_A 262 RVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRV 341 (970)
T ss_dssp HHHHHHHTTTCCSCCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99999987057877888898300058773368999987999999999999999999999999999997178999999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998742116787532024442232100369889998988876678998765689999998767887678888899999
Q 001537 318 LAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDST 397 (1057)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1057)
......+. +.+ +
T Consensus 342 ~~~~~~~~---~~~-----------~------------------------------------------------------ 353 (970)
T 1jqo_A 342 RAEELHSS---SGS-----------K------------------------------------------------------ 353 (970)
T ss_dssp HHHHHHHH---HCC-----------C------------------------------------------------------
T ss_pred HHHHHHHH---CCC-----------C------------------------------------------------------
T ss_conf 99978864---532-----------0------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99998776678899999889998876422355668777871368887665421013310000258999999899976798
Q 001537 398 GPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIV 477 (1057)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPyR~~ 477 (1057)
+...|. .| +..++++||||++
T Consensus 354 -----------------------~~~~~~-----------------------------~~-------~~~~~~~EPYR~~ 374 (970)
T 1jqo_A 354 -----------------------VTKYYI-----------------------------EF-------WKQIPPNEPYRVI 374 (970)
T ss_dssp -----------------------CCTTCS-----------------------------SS-------CSCCCTTSHHHHH
T ss_pred -----------------------HHCCCC-----------------------------CC-------CCCCCCCCCHHHH
T ss_conf -----------------------000011-----------------------------11-------2467899959999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999999986540699999998868998885879999999998539964401079999999987076433333
Q 001537 478 LGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLD 557 (1057)
Q Consensus 478 l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~~~g~~~~a~~~l~~lir~V~~FGfhla~LD 557 (1057)
|..|++||.+|+.++...+.+..........|.+++||++||.+|++||++||+..+|+|.|.++|++|++|||||++||
T Consensus 375 L~~i~~rL~~T~~~~~~~l~~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~~g~~~iA~g~L~~lir~V~~FGfhLa~LD 454 (970)
T 1jqo_A 375 LGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLD 454 (970)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCSTTSCCSHHHHHHHHHHHHHHHHHTSCCTTTTTHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEECCCCC
T ss_conf 99999999999999987523687777755678999999999999999999779734555049999999997391056623
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 32100279999999998539999999999889999999861999999999999975999999999999809211002554
Q 001537 558 LRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVI 637 (1057)
Q Consensus 558 iRQnS~~H~~al~ei~~~~g~~~Y~~l~E~~k~~~L~~eL~~~rpl~~~~~~~s~~~~evl~tf~~ia~~g~~a~~~yII 637 (1057)
|||||++|+++++||++++|+++|.+|||++|++||..+|.++||+.++..++|++++++|+||++++++|+++|++|||
T Consensus 455 iRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpL~~~~~~~s~~~~evL~~f~~i~~~g~~a~~~yII 534 (970)
T 1jqo_A 455 IRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYII 534 (970)
T ss_dssp EECCHHHHHHHHHHHHHHHTSCCSTTSCHHHHHHHHHHHHHCCSCCCCTTCCCCHHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHCEEEE
T ss_conf 20054589999999999758988555999999999999866788899988889989999999999999818353075775
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 27999576999999999806123488999999998732257789789820799999983169999999640698489986
Q 001537 638 SMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMV 717 (1057)
Q Consensus 638 Smt~saSDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETidDL~na~~im~~Ll~~p~Yr~~L~~~~~~~QeVMl 717 (1057)
|||+++||||+|++|+|++|+. ++|+|||||||++||+||+.||++||++||||+|+ +++|||||
T Consensus 535 Smt~s~sDvL~V~~L~ke~Gl~-----------~~l~VVPLFETi~DL~~a~~im~~ll~~p~yr~~l----~~~QeVML 599 (970)
T 1jqo_A 535 SMATAPSDVLAVELLQRECGVR-----------QPLPVVPLFERLADLQSAPASVERLFSVDWYMDRI----KGKQQVMV 599 (970)
T ss_dssp TTCCSTHHHHHHHHHHHHTCCS-----------SCCCEEEEECSHHHHHTHHHHHHHHHTCHHHHHHH----TSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-----------CCCCEECCCCCHHHHHHHHHHHHHHHHCHHHHHHH----CCEEEEEE
T ss_conf 7999999999999999982998-----------88873389798999984899999998286889860----78279997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 11467764225515699999999999999981993999537998889898703555311999975564331245533652
Q 001537 718 GYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQA 797 (1057)
Q Consensus 718 GYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSvGRGGGP~~~AIlsqP~gsv~g~iRiTEQGEvI~~ 797 (1057)
||||||||||+++|+|+||+||++|+++++++||+++|||||||||||||||+|+||+||||||++|++|+|||||||++
T Consensus 600 GYSDS~KD~G~laA~w~ly~Aq~~L~~v~~~~gV~l~lFHGRGGsvgRGGgp~~~ailaqP~gsv~G~ir~TeQGEvI~~ 679 (970)
T 1jqo_A 600 GYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEF 679 (970)
T ss_dssp ESTTHHHHSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSGGGTCCCHHHHHHTSCTTSCTTEEEEEEEHHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECHHHHH
T ss_conf 21566321039989999999999999999983990898638889977899976789975998520782389862489898
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHCCCCCC
Q ss_conf 01997999999999999999821799999991799999999999999995322116965078898408056761289888
Q 001537 798 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGS 877 (1057)
Q Consensus 798 kyg~~~lA~r~Le~~~~A~L~as~~~~~~~~~~~w~~~md~la~~S~~~YR~lv~~~p~F~~yF~~aTPi~eI~~LnIGS 877 (1057)
|||+|++|.||||++++|++++++.+++.+ +++|+++|++||+.|+++||++||++|+|++||+++||+.||+.|||||
T Consensus 680 kYg~p~~a~~nLe~~~aA~l~a~l~~~~~~-~~~~~~~m~~la~~s~~~Yr~lv~~~p~Fv~yF~~aTP~~ei~~LnIGS 758 (970)
T 1jqo_A 680 CFGEEHLCFQTLQRFTAATLEHGMHPPVSP-KPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGS 758 (970)
T ss_dssp HHSSHHHHHHHHHHHHHHHHHHHHSCCCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSCCGGGGGGCCSC
T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHCCCCC
T ss_conf 629928999999999999998334788899-8789999999999999999998840898789999849598997475678
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 88855799998755455203444100012223351459987755089--9899999982091299999999999981039
Q 001537 878 RPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKG--NTEDLKAMYKEWPFFQSTIDLIEMVLGKADT 955 (1057)
Q Consensus 878 RPakR~~~~~iedLRAIPWVFaWtQ~R~~lP~WyGvGsAl~~~~~~~--~~~~L~~My~~wPfFrt~ldnvemaLaKaDl 955 (1057)
||+||++++++++||||||||||+|+|+++|+|||+|+|++.+.+.+ +++.|++||++||||+++|||++|+|+|+|+
T Consensus 759 RPa~R~~~~~i~~LRAIPWvfsWtQ~R~~lP~w~G~GsAl~~~~~~~~~~l~~L~~my~~wPfF~t~ldn~eM~laK~Dl 838 (970)
T 1jqo_A 759 RPAKRRPGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDP 838 (970)
T ss_dssp CC--------CTTCCSHHHHHHHHHTTCCHHHHTTHHHHHHHHHHHCTTHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCH
T ss_conf 87667999985655412025379761577604530889999998737116999999998696799999999999982089
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC--
Q ss_conf 999999841056358999999999999999999977099754357914899998200120210799999999870688--
Q 001537 956 HIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDD-- 1033 (1057)
Q Consensus 956 ~Ia~~Y~~L~~d~~~~~i~~~i~~E~~~T~~~il~itg~~~Ll~~~p~l~~si~~RnpyvdpLn~lQvelLkr~R~~~-- 1033 (1057)
.||++|+++++|++..+||++|++||++|+++|++|||+++||+++|+|++||++|||||||||++|||||||+|+.+
T Consensus 839 ~iA~~Y~~ll~d~~~~~i~~~i~~E~~~T~~~ll~itg~~~LL~~~p~l~~si~lR~pyvdpLn~lQvelL~r~R~~~~~ 918 (970)
T 1jqo_A 839 GIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLKRIRDPNFK 918 (970)
T ss_dssp HHHHHHHHHTSCSTTHHHHHHHHHHHHHHHHHHHHHHTCSSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998558877899999999999999999999839720033686789999834277659999999999998725777
Q ss_pred --C--------------------------CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --8--------------------------55689999999999996203689
Q 001537 1034 --D--------------------------NHKLRDALLITINGIAAGMRNTG 1057 (1057)
Q Consensus 1034 --~--------------------------~~~l~~al~~TInGIAAGlrNTG 1057 (1057)
. ++.++++|++|||||||||||||
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lllTInGIAAGlrNTG 970 (970)
T 1jqo_A 919 VTPQPPLSKEFADENKPAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG 970 (970)
T ss_dssp CCCCCCCSCC-------CTTTTTSSSCSSCTTHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7766431000022210245530476544666789999999999999635588
No 2
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Probab=1.00 E-value=1 Score=2122.45 Aligned_cols=872 Identities=44% Similarity=0.780 Sum_probs=826.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 33189999999999999996521906999999999998974332104860038999999999980599999999999999
Q 001537 14 FQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFS 93 (1057)
Q Consensus 14 ~~~l~~dv~lLg~lLg~vi~~~~g~~~~~~ve~ir~~~~~~~~~r~~~~~~~~~~~~~~l~~~i~~L~~~~~~~laRAFs 93 (1057)
+.+|++||++||++||+||++++|+++|++||++|.+++.. |. ++..+ .++|.+.+.+|+++++..++||||
T Consensus 5 ~~~l~~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~l~~~~---r~-~~~~~----~~~l~~~l~~l~~~~~~~v~rAFs 76 (883)
T 1jqn_A 5 YSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSS---RA-GNDAN----RQELLTTLQNLSNDELLPVARAFS 76 (883)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH---HT-TCHHH----HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---HC-CCCHH----HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 68999999999999999999856799999999999998875---22-67144----999999985599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99979969987899997321038976299999999968-99978899997126404755069986431249999999999
Q 001537 94 HYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQG-GISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSH 172 (1057)
Q Consensus 94 ~~f~L~NlAEe~~r~r~~r~~~~~~~sl~~~~~~L~~~-gis~~~i~~~L~~~~v~pVlTAHPTE~~RrTvl~~~~rI~~ 172 (1057)
+||||+|||||+|++|+++......+||..++.+|++. |+++++|++.|+++.|+|||||||||++||||++|+++|++
T Consensus 77 ~~~~L~NiAE~~~~~r~~~~~~~~~~sl~~~~~~l~~~~g~~~~~i~~~L~~~~i~pVlTAHPTE~~Rrtvl~~~~~I~~ 156 (883)
T 1jqn_A 77 QFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNA 156 (883)
T ss_dssp HHHHHHHHHHHHHHHCTTTTCTTCTHHHHHHHHHHHTCTTCCHHHHHHHHHTCCEEEEECCCTTCCBSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999861279976099999999973498999999998458355644369740428999999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87222999999688999999999999997066822368999399899999999886886779999999999987119999
Q 001537 173 LLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPL 252 (1057)
Q Consensus 173 lL~~~d~~~l~~~e~~~~~~~L~~~I~~LW~TdeiR~~kPtv~DE~~~gL~y~~~sl~~aiP~l~~~l~~al~~~~g~~~ 252 (1057)
+|.++|+.++++.|+++++++|+++|+.||||||+|+.||||.||++|||+||++|||++||++|+++++++.++++..+
T Consensus 157 lL~~~~~~~l~~~e~~~~~~~L~~~I~~lW~T~eiR~~kPtv~DE~~~gl~y~~~sl~~avP~~~~~l~~~l~~~~~~~~ 236 (883)
T 1jqn_A 157 CLKQLDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKL 236 (883)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHHHHHHHCCCBCSSCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99985366798788999999999999998486110156988399999999999998999999999999999998648777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99889831145556789899878979999999999999999999999999965034546378888899987421167875
Q 001537 253 PLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDR 332 (1057)
Q Consensus 253 ~~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~a~~~Y~~~l~~L~~~LS~s~~s~~l~~~~~~~~~~~~~~~~~ 332 (1057)
|+.++||+|||||||||||||||||+||++|+.++|++++++|++++++|.++||++.||+++.+...
T Consensus 237 ~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L~~~LS~~~~s~~l~~~~~------------ 304 (883)
T 1jqn_A 237 PVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELLALVG------------ 304 (883)
T ss_dssp CTTCCCEEEEECTTTBCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHC------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH------------
T ss_conf 77788421279676478999999999999999999999999999999999987367888899999886------------
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32024442232100369889998988876678998765689999998767887678888899999999987766788999
Q 001537 333 HESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSK 412 (1057)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1057)
T Consensus 305 -------------------------------------------------------------------------------- 304 (883)
T 1jqn_A 305 -------------------------------------------------------------------------------- 304 (883)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99889998876422355668777871368887665421013310000258999999899976798999999999999999
Q 001537 413 PAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRL 492 (1057)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~ 492 (1057)
..+++||||++|..|++||.+|+.++
T Consensus 305 ------------------------------------------------------~~~~~EPyR~~l~~i~~rL~~t~~~~ 330 (883)
T 1jqn_A 305 ------------------------------------------------------EEGAAEPYRYLMKNLRSRLMATQAWL 330 (883)
T ss_dssp ------------------------------------------------------TTSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------------------------------------41579969999999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 86540699999998868998885879999999998539964401079999999987076433333321002799999999
Q 001537 493 ELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAI 572 (1057)
Q Consensus 493 ~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~~~g~~~~a~~~l~~lir~V~~FGfhla~LDiRQnS~~H~~al~ei 572 (1057)
...+.+.+. ..+...|.+++||++||.+|++||++||+..+|+|.|.++|++|++|||||++|||||||++|++|++||
T Consensus 331 ~~~~~~~~~-~~~~~~y~~~~ell~dL~~i~~SL~~~g~~~ia~~~L~~lir~v~~FGfhLa~LDiRQ~S~~H~~al~el 409 (883)
T 1jqn_A 331 EARLKGEEL-PKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGEL 409 (883)
T ss_dssp HHHHTTCCC-CCCSSCCCCHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHTTTTSSEEEEEEEHHHHHHHHHHH
T ss_pred HHHHCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 864226778-8844578999999999999999998779844577689999999986382067732222616999999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHH
Q ss_conf 98539999999999889999999861999999999999975999999999999809211002554279995769999999
Q 001537 573 TRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELL 652 (1057)
Q Consensus 573 ~~~~g~~~Y~~l~E~~k~~~L~~eL~~~rpl~~~~~~~s~~~~evl~tf~~ia~~g~~a~~~yIISmt~saSDvL~Vl~L 652 (1057)
++++|+++|.+|||++|++||.++|+++||+.+++.++|++++++|+||++++++++++|++||||||+++||||+|++|
T Consensus 410 ~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~~~L~~f~~i~~~~~~a~~~yIISmt~s~sDvL~V~~L 489 (883)
T 1jqn_A 410 TRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLL 489 (883)
T ss_dssp HHHHTSCCGGGSCHHHHHHHHHHHHHCSSCCSCSSCCCCHHHHHHHHHHHHHHHSCTTSEEEEEEETCCSHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHH
T ss_conf 99748998555999999999999866899999988899979999999999999866623081875799999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 99806123488999999998732257789789820799999983169999999640698489986114677642255156
Q 001537 653 QKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAA 732 (1057)
Q Consensus 653 akeagl~~~~~~g~~~~~~~l~VvPLFETidDL~na~~im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~ 732 (1057)
+||+|+. .+|+|||||||++||+|||.||++||++||||+|+ +++|||||||||||||||+++|+
T Consensus 490 ~ke~Gl~-----------~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l----~~~qeVMlGYSDS~KD~G~laA~ 554 (883)
T 1jqn_A 490 LKEAGIG-----------FAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAAS 554 (883)
T ss_dssp HHTTTCC-----------SCCCEEEEECSHHHHHHHHHHHHHHHHSHHHHHHT----TTEEEEEECHHHHHHHHCHHHHH
T ss_pred HHHHCCC-----------CCCCEECCCCCHHHHHHHHHHHHHHHHCHHHHHHH----CCEEEEEEEECCCCCCCCHHHHH
T ss_conf 9982899-----------88672289798999983899999998496888751----78589997204662220399899
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999999981993999537998889898703555311999975564331245533652019979999999999
Q 001537 733 WELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIY 812 (1057)
Q Consensus 733 W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSvGRGGGP~~~AIlsqP~gsv~g~iRiTEQGEvI~~kyg~~~lA~r~Le~~ 812 (1057)
|+||+||++|+++|+++||+++|||||||||||||||+|+||+||||||++|++|+|||||||++|||+|.+|.+|||++
T Consensus 555 w~ly~Aq~~L~~v~~~~gV~l~lFhGRGGsvgRGGgp~~~ailaqp~gsv~g~~r~TeQGEvI~~kY~~p~~a~~nLe~~ 634 (883)
T 1jqn_A 555 WAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLY 634 (883)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECSSTGGGSCHHHHHHHHHTSCTTTTTTCEEEEECGGGHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999984990898658899977899956889984899876773489735347798629969999999999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999821799999991799999999999999995322116965078898408056761289888888557999987554
Q 001537 813 TTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLR 892 (1057)
Q Consensus 813 ~~A~L~as~~~~~~~~~~~w~~~md~la~~S~~~YR~lv~~~p~F~~yF~~aTPi~eI~~LnIGSRPakR~~~~~iedLR 892 (1057)
++|++++++.++..| +++|+++|++||+.|+++||++|+++|+|++||+++||+.||++|||||||+||++++++++||
T Consensus 635 ~~A~l~~~~~~~~~~-~~~~~~~m~~la~~s~~~Yr~lv~~~p~fv~yf~~~tP~~ei~~L~IGSRPa~R~~~~~i~~LR 713 (883)
T 1jqn_A 635 TGAILEANLLPPPEP-KESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLR 713 (883)
T ss_dssp HHHHHHHHHSCCCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSCHHHHHHSSCSSCC------CCGGGSC
T ss_pred HHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 999998526898899-9789999999999999999999840888899999859398997465668863258999856564
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHH-HHHCCCHHHH
Q ss_conf 552034441000122233514599877550899899999982091299999999999981039999999-8410563589
Q 001537 893 AIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRY-DEVLVSESRQ 971 (1057)
Q Consensus 893 AIPWVFaWtQ~R~~lP~WyGvGsAl~~~~~~~~~~~L~~My~~wPfFrt~ldnvemaLaKaDl~Ia~~Y-~~L~~d~~~~ 971 (1057)
||||||||+|+|+++|+|||+|+|++.+++.+.++.|++||++||||+++|||++|+|+|+|+.||++| +.|++| +.+
T Consensus 714 AIPwvfsW~Q~R~~lP~w~G~GsAl~~~~~~~~~~~L~~my~~wpfFrt~l~n~em~laK~Dl~iA~~Y~~~Lv~~-~~~ 792 (883)
T 1jqn_A 714 AIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDK-ALW 792 (883)
T ss_dssp HHHHHHHHHHTTCCGGGTTTHHHHHHHHHTTTCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCT-TTH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCH-HHH
T ss_conf 0105668987016751563088999998835759999999986969999999999999813899999999872777-899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC-C----CCCHHHHHHHHHHH
Q ss_conf 999999999999999999770997543579148999982001202107999999998706-8----88556899999999
Q 001537 972 ELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQ-D----DDNHKLRDALLITI 1046 (1057)
Q Consensus 972 ~i~~~i~~E~~~T~~~il~itg~~~Ll~~~p~l~~si~~RnpyvdpLn~lQvelLkr~R~-~----~~~~~l~~al~~TI 1046 (1057)
+||+.|++||++|++++++|||+++||+++|++++||++|||||||||++|||||||+|+ + +.++.++++|++||
T Consensus 793 ~i~~~i~~E~~~T~~~ll~itg~~~Ll~~~p~l~~si~~R~pyv~pLn~lQvelL~r~R~~~~~~~~~~~~l~~~l~lTi 872 (883)
T 1jqn_A 793 PLGKELRNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKEGQEPDPRVEQALMVTI 872 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999998298221336867899998452776599999999999987167776544578999999999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99996203689
Q 001537 1047 NGIAAGMRNTG 1057 (1057)
Q Consensus 1047 nGIAAGlrNTG 1057 (1057)
|||||||||||
T Consensus 873 nGIAaGlRNTG 883 (883)
T 1jqn_A 873 AGIAAGMRNTG 883 (883)
T ss_dssp HHHHHHHCCCC
T ss_pred HHHHHHHCCCC
T ss_conf 99999744488
No 3
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=1.00 E-value=1 Score=524.01 Aligned_cols=357 Identities=18% Similarity=0.219 Sum_probs=272.5
Q ss_pred CCCCCCHHHHCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9211002554279995769999999998-061234889999999987322577897898207999999831699999996
Q 001537 628 GSDSLGAYVISMASNASDVLAVELLQKD-ARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHII 706 (1057)
Q Consensus 628 g~~a~~~yIISmt~saSDvL~Vl~Lake-agl~~~~~~g~~~~~~~l~VvPLFETidDL~na~~im~~Ll~~p~Yr~~L~ 706 (1057)
|.++++.||||||+++||||+|++|+|+ +|+... +.|.....+.|+|||||||++||.||+.||+++|++ |+. ++
T Consensus 136 g~~aI~~yIISMT~sasDlL~V~~L~k~~aGL~~~-e~g~~~~~~~i~VVPLFETieDL~~a~~Il~~ll~~--~r~-l~ 211 (560)
T 3odm_A 136 GTPAISEVVVPMIETGKEISEFQDRVNSVVDMGNK-NYKTKLDLNSVRIIPLVEDVPALANIDRILDEHYEI--EKS-KG 211 (560)
T ss_dssp SSCSCCEEEESSCCSHHHHHHHHHHHHHHHHHHHH-HCSSCCCTTSSEEEEEECCHHHHHTTHHHHHHHHHH--HHH-TT
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHH--HHH-HC
T ss_conf 97652748856999999999999999998262222-368877778777279828799998269999999999--998-60
Q ss_pred HHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHH--HHCCCCCCCCC
Q ss_conf 4069848998611467764225515699999999999999981993999537998889898703555--31199997556
Q 001537 707 KNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLA--IQSQPPGSVMG 784 (1057)
Q Consensus 707 ~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSvGRGGGP~~~A--IlsqP~gsv~g 784 (1057)
. +++.|||||||||||||||++||+|+||+||.+|+++++++||++++||||||||||||||++.| |++||||+
T Consensus 212 ~-~~~~QeVMLGYSDSaKDgG~laS~waly~Aq~~L~~~~~e~gI~l~lFHGRGGtvgRGGgp~~~a~aiLaQppG~--- 287 (560)
T 3odm_A 212 H-ILKDLRIMIARSDTAMSYGLISGVLSVLMAVDGAYKWGEKHGVTISPILGCGSLPFRGHFSEENIDEILATYSGI--- 287 (560)
T ss_dssp C-CCSEEEEEEESHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECCSSGGGTCCCTTCHHHHHHHTTTC---
T ss_pred C-CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC---
T ss_conf 3-688699998501676400299999999999999999999839937987217989767998978899998378998---
Q ss_pred CCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCC--HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 433124553365201997999999999999999821799999-991--79999999999999999532211696507889
Q 001537 785 TLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQP-PRE--EKWRNLMEEISKISCQNYRSTVYENPEFLAYF 861 (1057)
Q Consensus 785 ~iRiTEQGEvI~~kyg~~~lA~r~Le~~~~A~L~as~~~~~~-~~~--~~w~~~md~la~~S~~~YR~lv~~~p~F~~yF 861 (1057)
+++|||| ++||+.|. +.+.+|+.+++..+++. |+. .+|++.|+.+++.|+++||++|.+.++|+.||
T Consensus 288 -~tvTeQg---a~KYd~p~------~~y~~AI~~a~~~~p~~~P~~~~~e~~e~m~~la~~s~~~YR~~V~~~ad~I~~~ 357 (560)
T 3odm_A 288 -KTFTFQS---ALRYDHGE------EATKHAVRELKEKIAQSKPRNFSEEDKDLMKEFIGICSKHYLQTFLKVIDTVSFV 357 (560)
T ss_dssp -CEEEECH---HHHHTTCH------HHHHHHHHHHHHHGGGCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CEEEEEC---HHHCCCCH------HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf -5576306---03308888------9999999999727897576435667899999999999999999998756378999
Q ss_pred HHHCCHHHHHCCCCC-----CCCCCCC--------------------CCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 840805676128988-----8888557--------------------999987554552034441000122233514599
Q 001537 862 NEATPQAELGYLNIG-----SRPTRRK--------------------SSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAG 916 (1057)
Q Consensus 862 ~~aTPi~eI~~LnIG-----SRPakR~--------------------~~~~iedLRAIPWVFaWtQ~R~~lP~WyGvGsA 916 (1057)
+.+||..+..+|+|| ||-.--. ....+.==|||.++.||--.+++ |-..|+|++
T Consensus 358 a~~tP~rR~RkLhiG~lfGYsR~~~~~~~~~~~~~d~v~~~e~~~~~~~~~~~lPRAI~Ft~alYSiGlP-Pelig~~~~ 436 (560)
T 3odm_A 358 SDFIPKNRDRLTKAKTGLEYNREVANLDNVADLVKDEVLKQEILSIDNSKEYAVPRAISFTGAMYTLGMP-PELMGMGRA 436 (560)
T ss_dssp HTTSCCCSCBCC------------CCHHHHHTTCCCHHHHHHHHCSCCCSCCCCCCHHHHHHHHHHTTCC-GGGTTHHHH
T ss_pred HHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-HHHHCCHHH
T ss_conf 8849700211254466666066678764422000000000000012333334587555555788845898-687465026
Q ss_pred HHHHHHC---CCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8775508---9989999998209129999999999998103999999984105635899999999999999999997709
Q 001537 917 LKGVCDK---GNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSG 993 (1057)
Q Consensus 917 l~~~~~~---~~~~~L~~My~~wPfFrt~ldnvemaLaKaDl~Ia~~Y~~L~~d~~~~~i~~~i~~E~~~T~~~il~itg 993 (1057)
++.+.++ +.++.|.+ -.|.|+ .|+.-+..|...-.- ..-+...+..+.....+.+..+.|
T Consensus 437 l~~~k~~l~~~~ld~l~~---~yp~l~------------~Dl~~a~~y~~~~~~--~~~l~~~~~~~v~eDi~~~~~~~~ 499 (560)
T 3odm_A 437 LNEIKTKYGQEGIDKLLE---IYPILR------------KDLAFAARFANGGVS--KKIIDEEARQEYKEDMKYVNEILN 499 (560)
T ss_dssp HHHHHHHHCHHHHHHHHH---HSTTHH------------HHHHHHHTTCCTTTT--TTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCHHHHHHHHH---HHHHHH------------HHHHHHHHHCCHHHH--HHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 888863227789999999---835279------------999999983398889--875578999999999999999858
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9754357914899998200120210799999999
Q 001537 994 HEKLSENNRSLRRLIESRLPYLNPMNMLQVEILK 1027 (1057)
Q Consensus 994 ~~~Ll~~~p~l~~si~~RnpyvdpLn~lQvelLk 1027 (1057)
=+ -.|.-. .-..-|-.-|...|-.+|.
T Consensus 500 i~----~~~~~~---~~~~~Y~~ll~~~~p~~~~ 526 (560)
T 3odm_A 500 LG----LDYDFL---NENEFYHTLLKTTKPIIMH 526 (560)
T ss_dssp CC----CCHHHH---HHHCHHHHHHHHHHHHHHH
T ss_pred CC----CCCCCC---CHHHHHHHHHHHCCHHHHH
T ss_conf 78----899853---1005899998623568888
No 4
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=1.00 E-value=1 Score=33.51 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=86.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHH
Q ss_conf 999999998092110025542799957699999999980-6123488999999998732257789789820799999983
Q 001537 618 LDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDA-RLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLL 696 (1057)
Q Consensus 618 l~tf~~ia~~g~~a~~~yIISmt~saSDvL~Vl~Lakea-gl~~~~~~g~~~~~~~l~VvPLFETidDL~na~~im~~Ll 696 (1057)
.+-++...+.|.+. ..+|+.+++.|+.++--+.+++ | ..+.|++.-||.+.++|.+.|++.
T Consensus 175 ~~Di~~~l~~gvD~---I~lsfV~saeDv~~~~~~l~~~~~-------------~~i~IiakIEt~eav~nldeI~~~-- 236 (470)
T 1e0t_A 175 KQDLIFGCEQGVDF---VAASFIRKRSDVIEIREHLKAHGG-------------ENIHIISKIENQEGLNNFDEILEA-- 236 (470)
T ss_dssp HHHHHHHHHHTCSE---EEESSCCSHHHHHHHHHHHHTTTC-------------TTCEEEEEECSHHHHHTHHHHHHH--
T ss_pred HHHHHHHHHCCCCE---EEECCCCCHHHHHHHHHHHHHHCC-------------CCCEEEEEECCHHHHHHHHHHHHH--
T ss_conf 99999999769999---998898999999999999987058-------------984499998998999809999997--
Q ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHH
Q ss_conf 16999999964069848998611467764225515699999999999999981993999537998889898703
Q 001537 697 SIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPT 770 (1057)
Q Consensus 697 ~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSvGRGGGP~ 770 (1057)
. . -||+|-.|=+.+-|. ..+..+|+++...|+++|+.+..=-=-=.|+-+-.-||
T Consensus 237 --------s----D---gImVargDLgveig~----e~v~~~qk~ii~~araaGkpvI~ATQMLeSMi~~p~PT 291 (470)
T 1e0t_A 237 --------S----D---GIMVARGDLGVEIPV----EEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPT 291 (470)
T ss_dssp --------S----S---EEEEEHHHHHHHSCH----HHHHHHHHHHHHHHHHHTCEEEEECC---------CCC
T ss_pred --------C----C---EEEECCHHHHHHCCH----HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCC
T ss_conf --------9----9---999983686524088----99999999999999980998799514567650089741
No 5
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=1.00 E-value=1 Score=32.94 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=84.7
Q ss_pred HHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHCCHH
Q ss_conf 99999809211002554279995769999999998061234889999999987322577897898207999999831699
Q 001537 621 FRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDW 700 (1057)
Q Consensus 621 f~~ia~~g~~a~~~yIISmt~saSDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETidDL~na~~im~~Ll~~p~ 700 (1057)
++.+.+.|.+ ..++|+.+++.|+.++--+..++| ..+.|++.-||.+.++|.+.|++..
T Consensus 199 I~~~l~~g~d---~I~lpfV~saeDv~~~~~~l~~~~-------------~~i~IiakIEt~eav~nldeI~~~~----- 257 (500)
T 1a3w_A 199 LRFGVKNGVH---MVFASFIRTANDVLTIREVLGEQG-------------KDVKIIVKIENQQGVNNFDEILKVT----- 257 (500)
T ss_dssp HHHHHHHTCS---EEEECSCCSHHHHHHHHHHHHHHH-------------TTSEEEEEECSSHHHHSHHHHHHHS-----
T ss_pred HHHHHHCCCC---EEEECCCCCHHHHHHHHHHHHHCC-------------CCCEEEEEECCHHHHHHHHHHHHHC-----
T ss_conf 9999973999---999899899999999999998668-------------9867999978868987499999859-----
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHH
Q ss_conf 9999964069848998611467764225515699999999999999981993999537998889898703
Q 001537 701 YRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPT 770 (1057)
Q Consensus 701 Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSvGRGGGP~ 770 (1057)
--||+|-.|=+.+-|. ..+..+|+++...|+++|+.+..=-=-=.|+-...-|+
T Consensus 258 ------------DgImvgrgDLgvelg~----~~v~~aqk~ii~aaraaGkpvi~ATQMLeSMi~~~~pt 311 (500)
T 1a3w_A 258 ------------DGVMVARGDLGIEIPA----PEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPT 311 (500)
T ss_dssp ------------SEEEECHHHHHHHTTG----GGHHHHHHHHHHHHHHHTCCEEECSSTTGGGGSCSSCC
T ss_pred ------------CEEEECCHHHHHHCCC----HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCH
T ss_conf ------------9799882676555082----88999999999999854898799840125540289804
No 6
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=1.00 E-value=1 Score=31.81 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=78.0
Q ss_pred CCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 00255427999576999999999806123488999999998732257789789820799999983169999999640698
Q 001537 632 LGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNG 711 (1057)
Q Consensus 632 ~~~yIISmt~saSDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETidDL~na~~im~~Ll~~p~Yr~~L~~~~~~ 711 (1057)
+...+++|++++.|+-.+.-+.+++| ..+.|.|+.||...+.|...|. . ..+
T Consensus 94 ~~~i~lPkv~s~~~v~~~~~~l~~~g-------------~~~~i~~~IEt~~av~~~~eIa--------------~-~~~ 145 (284)
T 1sgj_A 94 LSGVVVPKLEMGAEARQVAQMLQERS-------------LPLPILAGLETGAGVWNAREIM--------------E-VPE 145 (284)
T ss_dssp SSEEEECSCCSHHHHHHHHHHHHHTT-------------CCCCEEEEECSHHHHHTHHHHH--------------T-STT
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCC-------------CCEEEEEEECCHHHHHHHHHHH--------------C-CCC
T ss_conf 98788578899999999999998559-------------9808999962889999899997--------------3-889
Q ss_pred EEEEEEECCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 489986114677642255--1569999999999999998199399953799888
Q 001537 712 HQEVMVGYSDSGKDAGRF--TAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSI 763 (1057)
Q Consensus 712 ~QeVMlGYSDS~KDgG~l--aA~W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSv 763 (1057)
..-+|+|-.|=+.+-|.- ...-.+..++.+++..|+.+|+.. ++|=-+.+
T Consensus 146 vd~l~iG~~DL~~~lg~~~~~~~~~~~~a~~~iv~aa~a~G~~~--i~~v~~~~ 197 (284)
T 1sgj_A 146 VAWAYFGAEDYTTDLGGKRTPGGLEVLYARSQVALAARLTGVAA--LDIVVTAL 197 (284)
T ss_dssp EEEEEECHHHHHHHHTCCCCSSCGGGHHHHHHHHHHHHHHTCEE--EECCCCCC
T ss_pred CCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--EECCCCCC
T ss_conf 74999788999998099879971799999999999999839986--62776788
No 7
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=1.00 E-value=1 Score=31.73 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHH
Q ss_conf 99759999999999998092110025542799957699999999980612348899999999873225778978982079
Q 001537 610 VPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAG 689 (1057)
Q Consensus 610 ~s~~~~evl~tf~~ia~~g~~a~~~yIISmt~saSDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETidDL~na~ 689 (1057)
+++.-++-+ +...+.|.+.+ .+|+.+++.||.++--+.+++| ..+.|+..-||.+.++|.+
T Consensus 240 lTekD~~dl---~f~~~~~vD~i---a~SfVr~a~Dv~~~r~~L~~~g-------------~~i~IIAKIE~~eav~nld 300 (550)
T 3gr4_A 240 VSEKDIQDL---KFGVEQDVDMV---FASFIRKASDVHEVRKVLGEKG-------------KNIKIISKIENHEGVRRFD 300 (550)
T ss_dssp SCHHHHHHH---HHHHHTTCSEE---EETTCCSHHHHHHHHHHHTTTT-------------TTSEEEEEECSHHHHHTHH
T ss_pred CCHHHHHHH---HHHHHCCCCEE---EECCCCCHHHHHHHHHHHHHCC-------------CCCEEEEEECCHHHHHHHH
T ss_conf 987799999---99997699899---9658899999999999999649-------------9855999968989987799
Q ss_pred HHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCH
Q ss_conf 99999831699999996406984899861146776422551569999999999999998199399953799888989870
Q 001537 690 LVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGP 769 (1057)
Q Consensus 690 ~im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSvGRGGGP 769 (1057)
.|++.. --||+|-.|=+-+.|. ..+..+|+++...|++.|..+..=---=.|+-.-.-|
T Consensus 301 eIl~~s-----------------DgImVaRGDLgvei~~----e~vp~~Qk~iI~~c~~agkpVi~ATQMLeSMi~~p~P 359 (550)
T 3gr4_A 301 EILEAS-----------------DGIMVARGDLGIEIPA----EKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRP 359 (550)
T ss_dssp HHHHHS-----------------SEEEEEHHHHHHHSCG----GGHHHHHHHHHHHHHHHTCCEEEESSTTGGGGTCSSC
T ss_pred HHHHHC-----------------CEEEECCCHHCCCCCH----HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCC
T ss_conf 999758-----------------8799945240364798----9999999999999998199879973426876218983
Q ss_pred H
Q ss_conf 3
Q 001537 770 T 770 (1057)
Q Consensus 770 ~ 770 (1057)
|
T Consensus 360 T 360 (550)
T 3gr4_A 360 T 360 (550)
T ss_dssp C
T ss_pred C
T ss_conf 1
No 8
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=1.00 E-value=1 Score=30.97 Aligned_cols=127 Identities=18% Similarity=0.145 Sum_probs=87.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999975999999999999809211002554279995769999999998061234889999999987322577
Q 001537 600 KRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLF 679 (1057)
Q Consensus 600 ~rpl~~~~~~~s~~~~evl~tf~~ia~~g~~a~~~yIISmt~saSDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLF 679 (1057)
..+++..+...++...+-+. .+...|. .+..+++-|++++.|+-.+.-+.++++ ..+.|.|+.
T Consensus 102 ~~~~VRVn~~~t~~~~~Dl~---~~l~~g~-~~~gIvlPKvesa~~v~~~~~~l~~~~-------------~~~~l~~~I 164 (316)
T 3qll_A 102 LPLALRINGLDTRAGIEDIH---ALLECGS-LPDYLVLPKTESAAHLQILDRLMMFAG-------------SDTRLIGII 164 (316)
T ss_dssp CCEEEECCCTTSHHHHHHHH---HHHHSCC-CCSEEEETTCCSHHHHHHHHHHTSCC---------------CCEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHH---HHHHCCC-CCCEEEECCCCCHHHHHHHHHHHHHCC-------------CCCEEEEEE
T ss_conf 96999989898752699999---9971777-788899699899999999999998607-------------787899997
Q ss_pred CCHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 89789820799999983169999999640698489986114677642255156999999999999999819939995379
Q 001537 680 ETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGR 759 (1057)
Q Consensus 680 ETidDL~na~~im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~lFHGR 759 (1057)
||...+.|+..|.. . ..+..-+++|-.|=..+-|.-...-.+..+..+++..|+.+|+.. ++|=
T Consensus 165 ET~~gv~~~~eIa~-------------a-~~~v~~l~~G~~DL~~~lG~~~~~~~l~~ar~~iv~AaraaGi~~--id~v 228 (316)
T 3qll_A 165 ESVRGLNAVESIAA-------------A-TPKLAGLIFGAADMAADIGAASTWEPLALARARLVSACAMNGIPA--IDAP 228 (316)
T ss_dssp CSHHHHHTHHHHHT-------------S-CTTEEEEEECHHHHHHHHTCCSSHHHHHHHHHHHHHHHHHHTCCE--EECC
T ss_pred CCHHHHHHHHHHHH-------------C-CCCCEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCE--EECC
T ss_conf 58999998999984-------------2-988329998889999980899995899999999999999819966--2156
No 9
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=1.00 E-value=1 Score=30.26 Aligned_cols=122 Identities=17% Similarity=0.253 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHH
Q ss_conf 99759999999999998092110025542799957699999999980612348899999999873225778978982079
Q 001537 610 VPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAG 689 (1057)
Q Consensus 610 ~s~~~~evl~tf~~ia~~g~~a~~~yIISmt~saSDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETidDL~na~ 689 (1057)
+++.-++-+. +...+.|.+. ..+|+.++++||.++--+.+++| ..+.|+..-||.+.++|.+
T Consensus 214 lTekD~~dl~--~f~~~~~vD~---Ia~SFVr~a~Dv~~~r~~l~~~g-------------~~i~IIAKIE~~eav~nld 275 (520)
T 3khd_A 214 ISEKDKNDIL--NFAIPMGCNF---IAASFIQSADDVRLIRNLLGPRG-------------RHIKIIPKIENIEGIIHFD 275 (520)
T ss_dssp SCHHHHHHHH--HTHHHHTCCE---EEETTCCSHHHHHHHHHHHTTTT-------------TTSEEEEEECSHHHHHTHH
T ss_pred CCHHHHHHHH--HHHHHCCCCE---EEECCCCCHHHHHHHHHHHHHCC-------------CCCCEEEEECCHHHHHHHH
T ss_conf 9988999999--9987749989---99889899899999999999669-------------9971899977999997499
Q ss_pred HHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCH
Q ss_conf 99999831699999996406984899861146776422551569999999999999998199399953799888989870
Q 001537 690 LVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGP 769 (1057)
Q Consensus 690 ~im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSvGRGGGP 769 (1057)
.|++.- --||+|-.|=+-+.|.- .+..+|+++...|++.|..+..=---=.|+-.-.-|
T Consensus 276 eIl~~s-----------------DGIMVARGDLgvEi~~e----~vp~~Qk~iI~~c~~aGKPVi~ATQMLeSMi~~p~P 334 (520)
T 3khd_A 276 KILAES-----------------DGIMIARGDLGMEISPE----KVFLAQKLMISKCNLQGKPIITATQMLESMTKNPRP 334 (520)
T ss_dssp HHHHHS-----------------SCEEECHHHHTTTSCGG----GHHHHHHHHHHHHHHHTCCEEECCCCCGGGGTCSSC
T ss_pred HHHHHC-----------------CCEEECCCCCCCCCCHH----HHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCC
T ss_conf 999727-----------------75798664134648989----999999999999998699859961446887319995
Q ss_pred H
Q ss_conf 3
Q 001537 770 T 770 (1057)
Q Consensus 770 ~ 770 (1057)
|
T Consensus 335 T 335 (520)
T 3khd_A 335 T 335 (520)
T ss_dssp C
T ss_pred C
T ss_conf 3
No 10
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=1.00 E-value=1 Score=29.52 Aligned_cols=125 Identities=20% Similarity=0.128 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHH
Q ss_conf 99759999999999998092110025542799957699999999980612348899999999873225778978982079
Q 001537 610 VPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAG 689 (1057)
Q Consensus 610 ~s~~~~evl~tf~~ia~~g~~a~~~yIISmt~saSDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETidDL~na~ 689 (1057)
+++.-.+-+... ...+.|.+ -..+|+.++++||.++--+.+++| ..+.|+.--||.+.++|-+
T Consensus 179 lTekD~~dl~~~-~~~~~~vD---~Ia~SfVr~a~Dv~~~r~~l~~~g-------------~~~~iiaKIE~~eav~nld 241 (461)
T 3qtg_A 179 PAEEDVEALKAI-SPIRDNID---YVAISLAKSCKDVDSVRSLLTELG-------------FQSQVAVKIETKGAVNNLE 241 (461)
T ss_dssp SCHHHHHHHHHH-GGGGGGCC---EEEECSCCSHHHHHHHHHHHHHTT-------------CCCEEEEEECSHHHHHTHH
T ss_pred CCHHHHHHHHHH-HHHHCCCC---EEEECCCCCHHHHHHHHHHHHHCC-------------CCCEEEEEECCHHHHHHHH
T ss_conf 897789998887-77654998---898548899899999999999639-------------9861899977989997399
Q ss_pred HHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCH
Q ss_conf 99999831699999996406984899861146776422551569999999999999998199399953799888989870
Q 001537 690 LVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGP 769 (1057)
Q Consensus 690 ~im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSvGRGGGP 769 (1057)
.|++.. --||+|-.|=+-+-|. ..+..+|+++...|+++|..+..=---=.|+-...-|
T Consensus 242 eIl~~s-----------------DgImVaRGDLgvei~~----e~v~~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~P 300 (461)
T 3qtg_A 242 ELVQCS-----------------DYVVVARGDLGLHYGL----DALPIVQRRIVHTSLKYGKPIAVATQLLDSMQSSPIP 300 (461)
T ss_dssp HHHHTC-----------------SEEEEEHHHHTTTSCT----TTHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSC
T ss_pred HHHHHC-----------------CCEEECCCCCCCCCCH----HHHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCC
T ss_conf 999735-----------------6379834303363799----9999999999999998399779963036866028986
Q ss_pred HHH
Q ss_conf 355
Q 001537 770 TYL 772 (1057)
Q Consensus 770 ~~~ 772 (1057)
|..
T Consensus 301 TRA 303 (461)
T 3qtg_A 301 TRA 303 (461)
T ss_dssp CHH
T ss_pred CHH
T ss_conf 389
Done!