BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001538
(1057 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Query: 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 66
G + + G +E ++ + K + F++ +L+ I + + V SL S+ + +
Sbjct: 39 GEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGI-YLVVINAKDTVYVLSLYSQKVLTTVFV 97
Query: 67 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 126
IT+ + +M IG +NG M V D D+ F+L D L + + FP
Sbjct: 98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL------DNLQKSSFFPAARL 151
Query: 127 QPVVGVLPHPNSSGNRVLIAYE 148
P+V + +P G VLI+YE
Sbjct: 152 SPIVSIQWNPRDIGT-VLISYE 172
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 33/160 (20%)
Query: 39 GFLISITNDNEIQVWSLESRSLACCLK----WESNITAFSVISGSHFMYI--GDENGLMS 92
G L+S + D ++VW ++ CC S + ++ + YI G + +
Sbjct: 174 GILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 93 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP-----VVGVLPHPNSS-------G 140
V ++LP S E+ +PL+ H P VGVL +S G
Sbjct: 231 V----------WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHG 280
Query: 141 NRVLI-AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 179
N V+ +Y+N L++ WDV++ + +++ G ++ + D
Sbjct: 281 NIVVSGSYDNTLIV-WDVAQXKCLYILSGHTDRIYSTIYD 319
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 33/160 (20%)
Query: 39 GFLISITNDNEIQVWSLESRSLACCLK----WESNITAFSVISGSHFMYI--GDENGLMS 92
G L+S + D ++VW ++ CC S + ++ + YI G + +
Sbjct: 174 GILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 93 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP-----VVGVLPHPNSS-------G 140
V ++LP S E+ +PL+ H P VGVL +S G
Sbjct: 231 V----------WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 280
Query: 141 NRVLI-AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 179
N V+ +Y+N L++ WDV++ + +++ G ++ + D
Sbjct: 281 NIVVSGSYDNTLIV-WDVAQMKCLYILSGHTDRIYSTIYD 319
>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 91
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 1012 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1056
DK+ ER KL + + LQ+GA F + A +L + + WWK
Sbjct: 26 DKVLERDQKLSELDDRADALQAGASQFETSAAKL----KRKYWWK 66
>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure
Length = 119
Score = 33.1 bits (74), Expect = 0.87, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 1012 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1056
DK+ ER KL + + LQ+GA F + A +L + + WWK
Sbjct: 54 DKVLERDQKLSELDDRADALQAGASQFETSAAKL----KRKYWWK 94
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 1012 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1056
DK+ ER KL + + LQ+GA F + A +L + + WWK
Sbjct: 25 DKVLERDQKLSELDDRADALQAGASQFETSAAKL----KRKYWWK 65
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 1012 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1056
DK+ ER KL + + LQ+GA F + A +L + + WWK
Sbjct: 51 DKVLERDQKLSELDDRADALQAGASQFETSAAKL----KRKYWWK 91
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 197 PEEKEISALCWASSSGSILAVGYIDGDILLWN 228
P ++ ++L W + S +AVG GDI+LWN
Sbjct: 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWN 148
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 197 PEEKEISALCWASSSGSILAVGYIDGDILLWN 228
P ++ ++L W + S +AVG GDI+LWN
Sbjct: 118 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWN 149
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 197 PEEKEISALCWASSSGSILAVGYIDGDILLWN 228
P ++ ++L W + S +AVG GDI+LWN
Sbjct: 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWN 148
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 323 DMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLT----TLLSQQEKKPSVCPVEFPG 378
+M++ S GA VG D P L SL +L ++K V P+ P
Sbjct: 146 NMLIKSGIGAYVGKVNMDY---NCPDYLTENYITSLNDTEEIILKYKDKSNIVKPIITPR 202
Query: 379 VIP-----ISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHI--KWPLSGG 431
+P + D + ++ LP H S+ L EIA LH G + K+ L G
Sbjct: 203 FVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHKKSNFYGEVYDKFGLFGN 262
Query: 432 VPS 434
P+
Sbjct: 263 TPT 265
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 32/114 (28%)
Query: 226 LWNTSTTASTKGQQTGSRNNVVK--------LELSSAERRLPVIVLHWSTNKESRSNIDG 277
++NT +K ++ + N+V++ LE S + + V + S K SR+ +
Sbjct: 454 VFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSV---YCSPAKSSRAAVGN 510
Query: 278 RLFVYGGDE----------IGS----------EEVLTVLSLEWSSGMENLRCVS 311
++FV G E +G+ E++L+V+ EW +G + LRC++
Sbjct: 511 KMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIK-EWGTGRDTLRCLA 563
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 32/114 (28%)
Query: 226 LWNTSTTASTKGQQTGSRNNVVK--------LELSSAERRLPVIVLHWSTNKESRSNIDG 277
++NT +K ++ + N+V++ LE S + + V + S K SR+ +
Sbjct: 455 VFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSV---YCSPAKSSRAAVGN 511
Query: 278 RLFVYGGDE----------IGS----------EEVLTVLSLEWSSGMENLRCVS 311
++FV G E +G+ E++L+V+ EW +G + LRC++
Sbjct: 512 KMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIK-EWGTGRDTLRCLA 564
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 32/114 (28%)
Query: 226 LWNTSTTASTKGQQTGSRNNVVK--------LELSSAERRLPVIVLHWSTNKESRSNIDG 277
++NT +K ++ + N+V++ LE S + + V + S K SR+ +
Sbjct: 454 VFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSV---YCSPAKSSRAAVGN 510
Query: 278 RLFVYGGDE----------IGS----------EEVLTVLSLEWSSGMENLRCVS 311
++FV G E +G+ E++L+V+ EW +G + LRC++
Sbjct: 511 KMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIK-EWGTGRDTLRCLA 563
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From
The Squid Loligo Pealei
Length = 80
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 1012 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1056
DK+ ER K+ + + LQ+GA F + A +L + + WWK
Sbjct: 36 DKVLERDSKISELDDRADALQAGASQFEASAGKL----KRKFWWK 76
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 50/192 (26%)
Query: 131 GVLPHPNSSGNRVLIAYENALVILWDVS---------EAQIIFVG--------------- 166
G+ +PN SG+ +L A ++ + LWD+S +A+ IF G
Sbjct: 182 GLSWNPNLSGH-LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 167 ---GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 223
G K + D+ S S + H E++ L + S ILA G D
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT---AEVNCLSFNPYSEFILATGSADKT 297
Query: 224 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAE-RRLPVIVLHWSTNKES---RSNIDGRL 279
+ LW+ RN +KL+L S E + + + WS + E+ S D RL
Sbjct: 298 VALWDL-------------RN--LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 280 FVYGGDEIGSEE 291
V+ +IG E+
Sbjct: 343 NVWDLSKIGEEQ 354
>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 63
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 1012 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWW 1055
DK+ ER KL + + LQ+GA F + A +L RK+W
Sbjct: 25 DKVLERDQKLSELDDRADALQAGASQFETSAAKL-----KRKYW 63
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 19/95 (20%)
Query: 201 EISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE-RRLP 259
E++ L + S ILA G D + LW+ RN +KL+L + E +
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDL-------------RN--LKLKLHTFESHKDE 321
Query: 260 VIVLHWSTNKES---RSNIDGRLFVYGGDEIGSEE 291
+ +HWS + E+ S D RL V+ +IG E+
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 19/95 (20%)
Query: 201 EISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE-RRLP 259
E++ L + S ILA G D + LW+ RN +KL+L + E +
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDL-------------RN--LKLKLHTFESHKDE 321
Query: 260 VIVLHWSTNKES---RSNIDGRLFVYGGDEIGSEE 291
+ +HWS + E+ S D RL V+ +IG E+
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 51/197 (25%)
Query: 41 LISITNDNEIQVWSLESRSLACCLKWESN-ITAFSVISGSHFMYIGDENGLMSVIKYDAD 99
++S DN ++VW L + L LK +N +T+ +V D++G+
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGV--------- 219
Query: 100 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 159
+L+ L +ALSE A + P+ + PN + A E + I
Sbjct: 220 -ARLWDL---TKGEALSEMA-----AGAPINQICFSPNRY--WMCAATEKGIRIF----- 263
Query: 160 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK---EISALCWASSSGSILA 216
DL+ KD +V E EHQ +K E ++ W S+ GS L
Sbjct: 264 ----------DLENKDIIV-----------ELAPEHQGSKKIVPECVSIAW-SADGSTLY 301
Query: 217 VGYIDGDILLWNTSTTA 233
GY D I +W S A
Sbjct: 302 SGYTDNVIRVWGVSENA 318
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 37/168 (22%)
Query: 6 DGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 64
D IK+ G DG IS +L ++ + + L+S ++D +++W + S L
Sbjct: 66 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 65 KWESNITAFS--------VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 116
K SN ++SGS DE SV +D GK +
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSF-----DE----SVRIWDVKTGKCLKT---------- 166
Query: 117 EKAGFPLLSH-QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 163
L +H PV V H N G+ ++ + + L +WD + Q +
Sbjct: 167 ------LPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 37/168 (22%)
Query: 6 DGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 64
D IK+ G DG IS +L ++ + + L+S ++D +++W + S L
Sbjct: 68 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 65 KWESNITAFS--------VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 116
K SN ++SGS DE SV +D GK +
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSF-----DE----SVRIWDVKTGKCLKT---------- 168
Query: 117 EKAGFPLLSH-QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 163
L +H PV V H N G+ ++ + + L +WD + Q +
Sbjct: 169 ------LPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 26/107 (24%)
Query: 138 SSGNRVLIAYENALVILWDVSE----------------------AQIIFVGGGKDLQLKD 175
++ N + YEN ++ WD+ A +FV G D +K
Sbjct: 298 NNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 357
Query: 176 GVVDSP-SEGDSTFLEGISEHQPEEKEISALCWAS---SSGSILAVG 218
++ P SE + E + + E+S C+ S S+G +L VG
Sbjct: 358 DIISDPESERPAIEFETPTFLVSNDDEVSQFCYVSDDESNGEVLEVG 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,471,553
Number of Sequences: 62578
Number of extensions: 1185688
Number of successful extensions: 2678
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2601
Number of HSP's gapped (non-prelim): 108
length of query: 1057
length of database: 14,973,337
effective HSP length: 109
effective length of query: 948
effective length of database: 8,152,335
effective search space: 7728413580
effective search space used: 7728413580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)