Query 001538
Match_columns 1057
No_of_seqs 379 out of 2755
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 3E-36 6.6E-41 340.8 36.3 502 2-673 79-597 (775)
2 KOG0271 Notchless-like WD40 re 100.0 2.1E-35 4.5E-40 310.9 30.1 362 25-648 114-479 (480)
3 KOG0291 WD40-repeat-containing 100.0 4.4E-32 9.6E-37 306.8 49.1 476 6-655 34-555 (893)
4 KOG0319 WD40-repeat-containing 100.0 2.6E-33 5.6E-38 317.2 39.0 481 27-675 63-557 (775)
5 KOG1983 Tomosyn and related SN 100.0 3.2E-33 6.9E-38 349.2 38.8 867 2-1057 52-993 (993)
6 KOG0271 Notchless-like WD40 re 100.0 2E-33 4.3E-38 296.0 27.2 312 123-673 112-459 (480)
7 KOG0318 WD40 repeat stress pro 100.0 1.7E-29 3.7E-34 276.2 50.0 500 3-676 77-584 (603)
8 KOG0318 WD40 repeat stress pro 100.0 1.7E-29 3.6E-34 276.4 48.9 433 1-649 164-601 (603)
9 KOG0291 WD40-repeat-containing 100.0 1.1E-29 2.4E-34 287.5 46.9 488 22-658 92-620 (893)
10 KOG0306 WD40-repeat-containing 100.0 4.9E-28 1.1E-32 274.1 44.7 495 24-673 63-642 (888)
11 PF08596 Lgl_C: Lethal giant l 100.0 5.3E-30 1.1E-34 292.2 27.0 326 487-864 2-358 (395)
12 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-29 4.6E-34 269.6 23.7 284 66-648 174-458 (459)
13 KOG0272 U4/U6 small nuclear ri 100.0 4.6E-29 1E-33 267.0 22.3 282 24-581 173-458 (459)
14 KOG0306 WD40-repeat-containing 100.0 8.4E-26 1.8E-30 256.1 47.7 489 27-674 22-601 (888)
15 KOG1539 WD repeat protein [Gen 99.9 8.6E-25 1.9E-29 250.9 39.6 482 3-648 130-646 (910)
16 KOG0273 Beta-transducin family 99.9 2.9E-25 6.3E-30 240.7 33.6 337 63-649 174-522 (524)
17 KOG0286 G-protein beta subunit 99.9 3E-25 6.5E-30 227.8 31.8 288 25-581 54-343 (343)
18 KOG0279 G protein beta subunit 99.9 3.6E-25 7.7E-30 226.2 31.0 298 61-650 8-313 (315)
19 KOG1539 WD repeat protein [Gen 99.9 7.3E-24 1.6E-28 243.3 40.5 495 7-658 95-614 (910)
20 PLN00181 protein SPA1-RELATED; 99.9 8.5E-24 1.8E-28 268.1 41.5 318 47-649 457-792 (793)
21 KOG0296 Angio-associated migra 99.9 1.5E-23 3.2E-28 221.4 34.4 336 24-583 62-398 (399)
22 KOG0315 G-protein beta subunit 99.9 9.3E-24 2E-28 212.3 29.8 297 40-607 12-309 (311)
23 KOG0263 Transcription initiati 99.9 1.1E-24 2.5E-29 250.4 26.4 261 65-586 376-652 (707)
24 KOG0276 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 226.6 39.6 284 25-582 12-297 (794)
25 KOG0315 G-protein beta subunit 99.9 7.5E-23 1.6E-27 205.8 33.1 302 139-675 9-310 (311)
26 PLN00181 protein SPA1-RELATED; 99.9 7.6E-23 1.6E-27 259.4 40.2 178 6-231 457-649 (793)
27 KOG0263 Transcription initiati 99.9 1.3E-24 2.9E-29 249.9 21.4 150 441-651 501-650 (707)
28 KOG0273 Beta-transducin family 99.9 9.5E-23 2E-27 221.3 33.9 333 23-583 175-523 (524)
29 KOG0286 G-protein beta subunit 99.9 1.8E-22 3.9E-27 207.5 32.3 290 122-648 51-343 (343)
30 KOG0279 G protein beta subunit 99.9 6.7E-23 1.4E-27 209.7 28.3 155 442-658 114-270 (315)
31 KOG0292 Vesicle coat complex C 99.9 3.6E-22 7.8E-27 229.6 37.3 311 26-583 9-321 (1202)
32 KOG0284 Polyadenylation factor 99.9 2.8E-24 6E-29 229.4 18.4 284 26-584 96-381 (464)
33 cd00200 WD40 WD40 domain, foun 99.9 7E-22 1.5E-26 216.2 36.2 283 124-648 7-289 (289)
34 KOG0295 WD40 repeat-containing 99.9 6.1E-23 1.3E-27 216.6 25.4 299 24-582 106-405 (406)
35 KOG2106 Uncharacterized conser 99.9 1.4E-20 3.1E-25 205.4 41.7 405 25-651 103-522 (626)
36 cd00200 WD40 WD40 domain, foun 99.9 4.1E-21 8.8E-26 210.2 37.1 282 24-581 7-289 (289)
37 KOG1408 WD40 repeat protein [F 99.9 5.3E-21 1.2E-25 215.2 36.2 519 9-651 60-714 (1080)
38 KOG0266 WD40 repeat-containing 99.9 3E-21 6.4E-26 228.4 33.0 288 67-649 159-453 (456)
39 KOG2048 WD40 repeat protein [G 99.9 3.4E-19 7.4E-24 201.7 46.9 491 2-653 42-551 (691)
40 KOG0284 Polyadenylation factor 99.9 1E-22 2.2E-27 217.5 17.0 283 126-649 96-379 (464)
41 KOG0285 Pleiotropic regulator 99.9 1.3E-21 2.8E-26 205.6 24.4 282 68-649 152-438 (460)
42 KOG0296 Angio-associated migra 99.9 2.2E-20 4.7E-25 197.6 32.6 335 123-650 61-398 (399)
43 KOG2048 WD40 repeat protein [G 99.9 2E-18 4.3E-23 195.5 50.3 475 26-654 25-509 (691)
44 KOG0285 Pleiotropic regulator 99.9 4.9E-21 1.1E-25 201.2 26.4 158 27-233 152-310 (460)
45 KOG0266 WD40 repeat-containing 99.9 9.6E-21 2.1E-25 224.1 32.5 167 18-232 151-320 (456)
46 KOG0265 U5 snRNP-specific prot 99.9 3E-20 6.5E-25 192.1 30.1 286 123-646 44-334 (338)
47 KOG0295 WD40 repeat-containing 99.9 3E-21 6.6E-26 203.8 23.0 284 124-648 106-404 (406)
48 KOG0282 mRNA splicing factor [ 99.9 1.4E-21 3E-26 213.3 20.0 294 59-648 205-503 (503)
49 KOG0645 WD40 repeat protein [G 99.9 6.7E-20 1.4E-24 187.1 30.7 289 124-650 12-311 (312)
50 KOG0276 Vesicle coat complex C 99.9 2.5E-19 5.5E-24 200.0 36.3 282 66-646 12-295 (794)
51 KOG0645 WD40 repeat protein [G 99.9 6.8E-19 1.5E-23 179.8 31.6 159 25-230 13-180 (312)
52 KOG0288 WD40 repeat protein Ti 99.9 5.7E-21 1.2E-25 204.6 17.3 285 66-647 174-458 (459)
53 KOG2106 Uncharacterized conser 99.9 1.7E-17 3.6E-22 181.7 43.3 379 8-581 135-519 (626)
54 KOG0316 Conserved WD40 repeat- 99.9 3.1E-19 6.7E-24 178.5 27.3 262 24-607 15-279 (307)
55 KOG0292 Vesicle coat complex C 99.9 6.5E-20 1.4E-24 211.2 25.3 262 68-592 10-289 (1202)
56 KOG0281 Beta-TrCP (transducin 99.8 1.5E-20 3.1E-25 196.6 16.2 111 444-585 369-479 (499)
57 KOG0310 Conserved WD40 repeat- 99.8 5.6E-19 1.2E-23 193.5 28.1 288 125-653 25-312 (487)
58 KOG0293 WD40 repeat-containing 99.8 2.3E-19 5E-24 191.8 24.4 161 24-232 222-386 (519)
59 KOG0281 Beta-TrCP (transducin 99.8 2E-20 4.2E-25 195.6 15.7 279 124-652 195-479 (499)
60 KOG0293 WD40 repeat-containing 99.8 1.3E-19 2.9E-24 193.7 22.3 285 124-649 222-512 (519)
61 KOG0646 WD40 repeat protein [G 99.8 2.6E-19 5.6E-24 195.1 24.2 138 447-608 190-329 (476)
62 KOG0313 Microtubule binding pr 99.8 4.3E-19 9.4E-24 188.6 25.2 145 444-648 270-416 (423)
63 PTZ00421 coronin; Provisional 99.8 1.8E-17 3.8E-22 195.8 40.3 173 441-658 28-206 (493)
64 KOG0772 Uncharacterized conser 99.8 4.7E-19 1E-23 194.1 24.7 306 68-647 168-484 (641)
65 KOG0265 U5 snRNP-specific prot 99.8 2.1E-18 4.5E-23 178.6 26.5 286 66-579 46-334 (338)
66 KOG1408 WD40 repeat protein [F 99.8 3.9E-18 8.4E-23 192.4 30.6 379 1-584 274-714 (1080)
67 KOG1407 WD40 repeat protein [F 99.8 5.5E-18 1.2E-22 172.2 28.4 261 67-607 20-281 (313)
68 KOG0305 Anaphase promoting com 99.8 1.6E-18 3.4E-23 197.6 27.5 147 31-229 182-330 (484)
69 KOG0310 Conserved WD40 repeat- 99.8 1.2E-18 2.5E-23 191.0 25.4 280 26-513 26-306 (487)
70 KOG0313 Microtubule binding pr 99.8 6.6E-18 1.4E-22 179.7 29.6 301 29-582 108-417 (423)
71 KOG1063 RNA polymerase II elon 99.8 1.4E-17 3.1E-22 188.6 34.1 515 4-649 118-698 (764)
72 KOG0772 Uncharacterized conser 99.8 9.9E-19 2.2E-23 191.6 24.0 162 445-656 281-451 (641)
73 KOG0282 mRNA splicing factor [ 99.8 2.5E-19 5.5E-24 195.8 17.8 159 25-232 213-374 (503)
74 KOG0316 Conserved WD40 repeat- 99.8 2.1E-18 4.6E-23 172.5 22.5 151 446-659 114-266 (307)
75 KOG0277 Peroxisomal targeting 99.8 1.3E-18 2.9E-23 175.9 21.0 267 46-582 36-308 (311)
76 KOG0275 Conserved WD40 repeat- 99.8 4.1E-19 8.9E-24 184.0 17.4 161 25-233 212-381 (508)
77 KOG0643 Translation initiation 99.8 2.8E-17 6.1E-22 167.5 28.8 158 25-232 9-179 (327)
78 KOG0973 Histone transcription 99.8 5.7E-18 1.2E-22 201.8 27.2 328 26-519 13-358 (942)
79 KOG0283 WD40 repeat-containing 99.8 5.8E-18 1.3E-22 197.2 25.9 154 446-651 423-577 (712)
80 KOG2096 WD40 repeat protein [G 99.8 4.6E-17 9.9E-22 169.3 28.7 165 25-229 85-257 (420)
81 KOG0299 U3 snoRNP-associated p 99.8 3.2E-17 6.9E-22 178.5 27.9 295 66-571 141-443 (479)
82 KOG0283 WD40 repeat-containing 99.8 7.6E-18 1.6E-22 196.3 24.7 161 24-231 265-441 (712)
83 KOG0278 Serine/threonine kinas 99.8 4.6E-18 1E-22 171.3 19.8 287 124-652 12-299 (334)
84 KOG0289 mRNA splicing factor [ 99.8 4.5E-17 9.8E-22 175.7 28.2 159 27-232 220-379 (506)
85 PTZ00421 coronin; Provisional 99.8 1.6E-16 3.5E-21 187.6 35.8 152 446-657 139-297 (493)
86 KOG1063 RNA polymerase II elon 99.8 2.5E-16 5.5E-21 178.7 34.0 510 8-652 35-650 (764)
87 KOG0641 WD40 repeat protein [G 99.8 3.8E-16 8.2E-21 155.1 30.7 313 199-649 32-348 (350)
88 KOG0275 Conserved WD40 repeat- 99.8 1.2E-18 2.7E-23 180.5 13.3 167 439-658 219-386 (508)
89 PTZ00420 coronin; Provisional 99.8 1.2E-16 2.7E-21 189.5 31.9 147 447-653 140-296 (568)
90 KOG0274 Cdc4 and related F-box 99.8 3.6E-17 7.8E-22 193.5 27.3 150 445-658 341-490 (537)
91 KOG0278 Serine/threonine kinas 99.8 3.5E-18 7.6E-23 172.2 15.9 178 4-231 36-214 (334)
92 KOG1036 Mitotic spindle checkp 99.8 9.4E-17 2E-21 167.3 26.3 279 126-640 13-294 (323)
93 KOG1407 WD40 repeat protein [F 99.8 5.7E-17 1.2E-21 164.9 24.0 138 488-675 149-295 (313)
94 KOG0647 mRNA export protein (c 99.8 2.2E-16 4.8E-21 163.7 27.8 278 123-607 24-302 (347)
95 KOG1273 WD40 repeat protein [G 99.8 6.9E-18 1.5E-22 175.2 15.6 199 489-770 26-259 (405)
96 KOG0643 Translation initiation 99.8 1.3E-16 2.8E-21 162.8 24.4 297 123-647 7-314 (327)
97 KOG0289 mRNA splicing factor [ 99.8 1.8E-16 3.8E-21 171.2 26.9 284 126-648 219-504 (506)
98 KOG0277 Peroxisomal targeting 99.8 5.5E-17 1.2E-21 164.3 21.5 147 444-649 159-308 (311)
99 KOG0305 Anaphase promoting com 99.8 1.7E-16 3.7E-21 181.1 27.7 149 440-650 308-461 (484)
100 KOG0973 Histone transcription 99.8 1.2E-16 2.7E-21 190.5 27.6 323 68-651 14-356 (942)
101 KOG0288 WD40 repeat protein Ti 99.8 1.6E-17 3.5E-22 178.3 17.8 155 26-232 175-332 (459)
102 KOG2055 WD40 repeat protein [G 99.8 1E-16 2.2E-21 174.4 24.0 161 22-231 209-375 (514)
103 KOG0641 WD40 repeat protein [G 99.7 4.5E-15 9.7E-20 147.5 31.8 309 15-583 21-349 (350)
104 KOG0268 Sof1-like rRNA process 99.7 1.8E-17 4E-22 175.1 15.7 287 122-656 62-351 (433)
105 KOG0299 U3 snoRNP-associated p 99.7 4.5E-16 9.8E-21 169.6 26.7 292 123-607 139-434 (479)
106 KOG1446 Histone H3 (Lys4) meth 99.7 2E-15 4.3E-20 158.4 30.4 155 446-658 113-270 (311)
107 KOG0300 WD40 repeat-containing 99.7 2E-16 4.4E-21 163.9 22.5 324 8-586 127-479 (481)
108 KOG1963 WD40 repeat protein [G 99.7 4.7E-15 1E-19 173.6 36.1 527 2-657 32-590 (792)
109 KOG0274 Cdc4 and related F-box 99.7 8.1E-16 1.8E-20 182.0 29.5 151 26-231 208-360 (537)
110 KOG1036 Mitotic spindle checkp 99.7 6.9E-16 1.5E-20 160.9 24.6 159 20-232 7-165 (323)
111 PTZ00420 coronin; Provisional 99.7 1.5E-15 3.2E-20 180.4 30.2 155 450-658 49-205 (568)
112 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.8E-14 3.9E-19 160.9 37.3 140 40-230 3-145 (300)
113 KOG0640 mRNA cleavage stimulat 99.7 1E-15 2.2E-20 158.7 23.3 167 22-232 108-293 (430)
114 KOG0639 Transducin-like enhanc 99.7 3.2E-16 6.8E-21 171.2 19.2 143 442-648 560-702 (705)
115 KOG0640 mRNA cleavage stimulat 99.7 8.4E-16 1.8E-20 159.3 20.8 290 123-583 109-426 (430)
116 KOG0268 Sof1-like rRNA process 99.7 1.5E-16 3.2E-21 168.4 15.4 279 26-518 66-347 (433)
117 KOG0308 Conserved WD40 repeat- 99.7 4.6E-16 1E-20 175.4 20.3 145 444-649 182-326 (735)
118 KOG0294 WD40 repeat-containing 99.7 5.3E-15 1.2E-19 154.4 25.6 155 25-232 42-199 (362)
119 KOG0300 WD40 repeat-containing 99.7 2E-15 4.3E-20 156.6 21.8 150 446-658 285-435 (481)
120 KOG2096 WD40 repeat protein [G 99.7 8E-15 1.7E-19 152.8 26.0 162 442-656 196-366 (420)
121 KOG0647 mRNA export protein (c 99.7 5.8E-15 1.3E-19 153.3 24.1 118 66-231 26-146 (347)
122 KOG2055 WD40 repeat protein [G 99.7 6.1E-15 1.3E-19 160.7 25.1 158 441-649 352-511 (514)
123 KOG0294 WD40 repeat-containing 99.7 1.6E-14 3.4E-19 150.9 26.8 149 441-652 135-283 (362)
124 KOG0308 Conserved WD40 repeat- 99.7 9.6E-16 2.1E-20 172.9 19.2 157 444-651 129-286 (735)
125 KOG1446 Histone H3 (Lys4) meth 99.7 6E-14 1.3E-18 147.4 30.9 156 26-232 14-172 (311)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.1E-13 2.3E-18 154.7 35.4 180 2-232 6-189 (300)
127 KOG0301 Phospholipase A2-activ 99.7 7.1E-15 1.5E-19 167.2 25.3 135 448-650 115-249 (745)
128 KOG1445 Tumor-specific antigen 99.7 3.9E-14 8.5E-19 158.4 30.0 153 451-653 599-753 (1012)
129 KOG0269 WD40 repeat-containing 99.7 4.2E-15 9.1E-20 170.8 20.0 290 67-578 39-335 (839)
130 KOG0301 Phospholipase A2-activ 99.6 2.8E-14 6.1E-19 162.4 25.5 151 25-229 13-168 (745)
131 KOG2445 Nuclear pore complex c 99.6 6.4E-14 1.4E-18 145.9 25.5 159 446-648 127-316 (361)
132 KOG0321 WD40 repeat-containing 99.6 2.1E-14 4.6E-19 161.8 22.6 164 441-652 225-393 (720)
133 KOG1274 WD40 repeat protein [G 99.6 1.3E-13 2.7E-18 161.7 28.7 133 441-608 146-280 (933)
134 KOG0267 Microtubule severing p 99.6 3.1E-16 6.7E-21 178.5 6.7 158 440-658 77-234 (825)
135 KOG1273 WD40 repeat protein [G 99.6 5.8E-14 1.3E-18 146.3 22.8 158 441-650 161-322 (405)
136 KOG4283 Transcription-coupled 99.6 1.2E-13 2.7E-18 142.6 24.6 329 113-649 30-364 (397)
137 KOG1332 Vesicle coat complex C 99.6 3.4E-14 7.5E-19 143.5 19.9 156 442-650 113-286 (299)
138 KOG0264 Nucleosome remodeling 99.6 6E-14 1.3E-18 153.5 23.5 149 444-650 239-404 (422)
139 KOG0264 Nucleosome remodeling 99.6 3.7E-14 8E-19 155.1 21.5 116 446-583 286-404 (422)
140 KOG2445 Nuclear pore complex c 99.6 3E-13 6.5E-18 141.0 26.2 295 68-518 14-320 (361)
141 KOG1332 Vesicle coat complex C 99.6 8.6E-14 1.9E-18 140.7 21.3 256 139-582 22-285 (299)
142 KOG0650 WD40 repeat nucleolar 99.6 1.6E-13 3.4E-18 153.6 25.3 149 441-647 574-732 (733)
143 KOG1274 WD40 repeat protein [G 99.6 3.3E-13 7.2E-18 158.3 28.6 172 441-663 104-281 (933)
144 KOG1517 Guanine nucleotide bin 99.6 5.9E-13 1.3E-17 157.2 27.6 153 444-651 1220-1382(1387)
145 KOG0650 WD40 repeat nucleolar 99.6 6E-13 1.3E-17 149.1 25.2 115 440-580 614-732 (733)
146 KOG0639 Transducin-like enhanc 99.6 1.9E-13 4.2E-18 149.7 20.7 164 22-233 415-584 (705)
147 KOG0302 Ribosome Assembly prot 99.6 1.2E-13 2.6E-18 147.3 18.2 150 447-651 226-379 (440)
148 KOG0322 G-protein beta subunit 99.5 1.5E-13 3.3E-18 140.3 16.8 154 447-649 167-322 (323)
149 KOG1538 Uncharacterized conser 99.5 6.6E-12 1.4E-16 141.6 30.7 172 28-267 14-186 (1081)
150 KOG1034 Transcriptional repres 99.5 1.2E-12 2.6E-17 137.6 22.5 163 25-232 37-213 (385)
151 KOG0270 WD40 repeat-containing 99.5 4.9E-13 1.1E-17 145.7 19.8 302 30-519 129-452 (463)
152 KOG4328 WD40 protein [Function 99.5 2E-12 4.3E-17 141.3 24.3 158 446-650 336-495 (498)
153 KOG0322 G-protein beta subunit 99.5 4E-13 8.7E-18 137.2 15.9 305 24-515 12-322 (323)
154 KOG0269 WD40 repeat-containing 99.5 7.7E-14 1.7E-18 160.6 11.2 151 443-652 98-252 (839)
155 KOG0646 WD40 repeat protein [G 99.5 2.3E-12 4.9E-17 141.4 21.9 218 26-298 81-306 (476)
156 KOG4283 Transcription-coupled 99.5 4.7E-12 1E-16 131.1 22.4 171 427-650 41-219 (397)
157 COG2319 FOG: WD40 repeat [Gene 99.5 1.6E-09 3.4E-14 124.9 46.8 370 24-651 63-443 (466)
158 KOG0267 Microtubule severing p 99.5 4.6E-14 9.9E-19 161.1 6.8 161 24-233 68-229 (825)
159 KOG1517 Guanine nucleotide bin 99.5 1.9E-11 4.2E-16 144.7 27.4 167 28-231 1066-1240(1387)
160 KOG0302 Ribosome Assembly prot 99.5 4.3E-12 9.4E-17 135.6 20.0 205 26-299 151-378 (440)
161 KOG4378 Nuclear protein COP1 [ 99.4 1.2E-11 2.6E-16 135.8 22.0 86 444-565 220-305 (673)
162 KOG1034 Transcriptional repres 99.4 1.6E-11 3.5E-16 129.3 20.9 262 485-834 88-373 (385)
163 KOG1587 Cytoplasmic dynein int 99.4 7.4E-11 1.6E-15 139.0 28.2 265 199-584 242-517 (555)
164 KOG1240 Protein kinase contain 99.4 6.8E-11 1.5E-15 142.4 28.1 228 12-298 1034-1272(1431)
165 PRK11028 6-phosphogluconolacto 99.4 6.7E-10 1.5E-14 126.8 35.0 143 41-231 5-157 (330)
166 KOG1963 WD40 repeat protein [G 99.4 2.1E-10 4.5E-15 135.1 30.9 150 34-233 168-325 (792)
167 KOG0321 WD40 repeat-containing 99.4 6.2E-11 1.3E-15 134.3 24.5 179 32-233 55-251 (720)
168 KOG1538 Uncharacterized conser 99.4 4.5E-11 9.8E-16 135.0 23.2 149 441-650 140-293 (1081)
169 KOG0307 Vesicle coat complex C 99.4 5.6E-12 1.2E-16 151.8 16.6 151 446-653 175-330 (1049)
170 KOG0270 WD40 repeat-containing 99.4 2.8E-11 6.1E-16 132.2 19.1 184 2-232 197-406 (463)
171 KOG1445 Tumor-specific antigen 99.4 1.8E-11 3.9E-16 137.5 17.5 205 31-297 584-796 (1012)
172 KOG2919 Guanine nucleotide-bin 99.3 7.5E-11 1.6E-15 123.9 20.6 161 440-653 165-331 (406)
173 KOG0307 Vesicle coat complex C 99.3 1.4E-11 2.9E-16 148.5 16.3 283 45-519 36-330 (1049)
174 COG2319 FOG: WD40 repeat [Gene 99.3 2E-08 4.2E-13 115.8 42.0 339 65-658 63-408 (466)
175 KOG0290 Conserved WD40 repeat- 99.3 1.7E-09 3.7E-14 112.4 26.1 174 20-232 38-229 (364)
176 KOG1240 Protein kinase contain 99.3 1.1E-09 2.4E-14 132.2 26.9 283 199-588 1048-1339(1431)
177 KOG4328 WD40 protein [Function 99.3 2.6E-10 5.7E-15 125.0 19.0 156 440-651 193-354 (498)
178 KOG0649 WD40 repeat protein [G 99.2 2.2E-09 4.8E-14 108.9 23.9 162 32-233 16-189 (325)
179 KOG0303 Actin-binding protein 99.2 1.1E-10 2.3E-15 125.7 15.4 146 483-672 78-226 (472)
180 KOG1188 WD40 repeat protein [G 99.2 2.6E-10 5.6E-15 121.0 17.6 187 2-233 45-245 (376)
181 KOG4378 Nuclear protein COP1 [ 99.2 1.5E-10 3.2E-15 127.4 16.0 204 2-267 96-303 (673)
182 KOG0771 Prolactin regulatory e 99.2 1.8E-10 3.9E-15 125.7 16.0 174 440-649 151-353 (398)
183 KOG0642 Cell-cycle nuclear pro 99.2 1.3E-10 2.8E-15 130.5 14.6 122 440-585 301-428 (577)
184 KOG1009 Chromatin assembly com 99.2 7.1E-09 1.5E-13 112.5 26.2 166 25-230 12-195 (434)
185 KOG1007 WD repeat protein TSSC 99.2 5.6E-09 1.2E-13 108.5 24.2 126 445-582 227-360 (370)
186 KOG2110 Uncharacterized conser 99.2 1.9E-09 4.2E-14 115.7 21.3 147 447-651 99-249 (391)
187 KOG2111 Uncharacterized conser 99.2 4.7E-08 1E-12 103.4 30.8 120 446-576 194-315 (346)
188 KOG1188 WD40 repeat protein [G 99.1 1.6E-09 3.5E-14 115.1 17.8 155 445-656 84-248 (376)
189 PRK11028 6-phosphogluconolacto 99.1 6.9E-08 1.5E-12 110.2 32.1 188 4-231 9-206 (330)
190 KOG1009 Chromatin assembly com 99.1 3.6E-10 7.7E-15 122.4 11.9 171 447-654 28-199 (434)
191 KOG0642 Cell-cycle nuclear pro 99.1 7.8E-10 1.7E-14 124.4 14.5 66 441-517 497-562 (577)
192 KOG1587 Cytoplasmic dynein int 99.1 1.7E-08 3.7E-13 119.3 26.5 150 48-226 222-374 (555)
193 KOG1007 WD repeat protein TSSC 99.1 3.1E-08 6.7E-13 103.1 24.7 183 11-232 7-203 (370)
194 PF02239 Cytochrom_D1: Cytochr 99.1 6.1E-08 1.3E-12 111.4 30.2 188 3-232 12-204 (369)
195 KOG0290 Conserved WD40 repeat- 99.1 1.2E-08 2.6E-13 106.2 20.3 155 443-651 161-319 (364)
196 KOG2394 WD40 protein DMR-N9 [G 99.1 9.9E-09 2.2E-13 114.7 20.4 139 487-653 291-455 (636)
197 KOG1524 WD40 repeat-containing 99.1 6.2E-09 1.4E-13 115.8 18.5 88 445-582 198-285 (737)
198 KOG4497 Uncharacterized conser 99.1 9.3E-08 2E-12 101.1 26.2 109 73-232 14-124 (447)
199 KOG4227 WD40 repeat protein [G 99.1 3.3E-08 7.2E-13 106.1 23.3 125 67-232 56-181 (609)
200 KOG4227 WD40 repeat protein [G 99.0 1.9E-08 4.1E-13 107.9 21.1 164 26-233 56-228 (609)
201 PRK01742 tolB translocation pr 99.0 4.8E-09 1E-13 124.0 18.5 176 6-233 183-364 (429)
202 KOG1524 WD40 repeat-containing 99.0 4.6E-09 1E-13 116.8 16.1 169 2-225 80-250 (737)
203 KOG0303 Actin-binding protein 99.0 6.2E-09 1.4E-13 112.3 16.3 154 443-651 92-250 (472)
204 KOG0771 Prolactin regulatory e 99.0 3.3E-09 7.1E-14 116.0 13.6 184 3-230 162-354 (398)
205 KOG2111 Uncharacterized conser 99.0 2.8E-08 6.2E-13 105.0 19.3 179 7-233 75-259 (346)
206 KOG1912 WD40 repeat protein [G 99.0 1E-07 2.2E-12 110.6 24.9 196 2-231 84-305 (1062)
207 KOG0649 WD40 repeat protein [G 99.0 1.6E-07 3.5E-12 95.6 23.3 150 442-649 123-273 (325)
208 KOG2919 Guanine nucleotide-bin 99.0 3.7E-08 8E-13 104.0 18.8 211 24-299 102-327 (406)
209 PRK05137 tolB translocation pr 98.9 1.4E-07 3.1E-12 111.9 26.1 176 8-232 183-368 (435)
210 KOG2110 Uncharacterized conser 98.9 6.1E-08 1.3E-12 104.4 20.3 173 9-233 70-251 (391)
211 KOG1912 WD40 repeat protein [G 98.9 4.5E-07 9.7E-12 105.4 27.6 155 27-229 16-185 (1062)
212 KOG2041 WD40 repeat protein [G 98.9 4.8E-06 1E-10 95.9 35.2 131 66-229 13-144 (1189)
213 PRK03629 tolB translocation pr 98.9 1.2E-07 2.5E-12 112.1 22.7 176 8-232 180-365 (429)
214 KOG2321 WD40 repeat protein [G 98.9 7.3E-08 1.6E-12 108.6 19.1 251 23-353 48-340 (703)
215 PF08662 eIF2A: Eukaryotic tra 98.9 7.2E-08 1.6E-12 100.8 18.0 116 487-658 60-186 (194)
216 PRK02889 tolB translocation pr 98.9 1.3E-07 2.9E-12 111.6 22.5 178 7-233 176-363 (427)
217 PF02239 Cytochrom_D1: Cytochr 98.9 1.1E-05 2.4E-10 92.9 37.0 103 80-232 6-110 (369)
218 KOG3881 Uncharacterized conser 98.9 3.9E-08 8.4E-13 106.6 15.2 165 441-658 157-328 (412)
219 KOG1334 WD40 repeat protein [G 98.9 3.2E-08 7E-13 109.6 14.8 173 446-657 246-431 (559)
220 KOG0644 Uncharacterized conser 98.8 2E-08 4.3E-13 117.1 13.2 156 25-229 189-345 (1113)
221 PF04762 IKI3: IKI3 family; I 98.8 0.00029 6.4E-09 89.9 51.6 194 27-267 76-314 (928)
222 KOG3881 Uncharacterized conser 98.8 3.4E-07 7.3E-12 99.4 21.4 125 445-607 216-340 (412)
223 PF08662 eIF2A: Eukaryotic tra 98.8 2.1E-07 4.5E-12 97.4 19.4 147 31-231 10-180 (194)
224 KOG4497 Uncharacterized conser 98.8 3.7E-07 8E-12 96.7 20.9 114 31-164 13-128 (447)
225 KOG2139 WD40 repeat protein [G 98.8 2.3E-07 4.9E-12 99.5 18.1 165 28-230 100-268 (445)
226 PRK01742 tolB translocation pr 98.8 2.2E-07 4.7E-12 109.9 19.7 170 7-230 228-401 (429)
227 PRK04922 tolB translocation pr 98.8 3E-07 6.5E-12 108.9 20.9 177 7-232 184-370 (433)
228 KOG0644 Uncharacterized conser 98.8 4.3E-09 9.3E-14 122.5 4.6 115 428-583 186-300 (1113)
229 KOG1064 RAVE (regulator of V-A 98.8 2.5E-08 5.5E-13 124.3 10.8 172 441-659 2216-2407(2439)
230 TIGR02800 propeller_TolB tol-p 98.7 6.8E-07 1.5E-11 105.5 22.1 176 8-232 171-356 (417)
231 KOG2394 WD40 protein DMR-N9 [G 98.7 1E-07 2.2E-12 106.8 13.8 180 447-658 187-370 (636)
232 KOG1523 Actin-related protein 98.7 7.7E-07 1.7E-11 94.4 17.9 200 2-232 27-238 (361)
233 KOG1272 WD40-repeat-containing 98.7 1.7E-08 3.7E-13 111.1 5.7 180 3-233 147-326 (545)
234 PF04762 IKI3: IKI3 family; I 98.7 0.00059 1.3E-08 87.2 47.0 229 1-302 91-382 (928)
235 KOG4547 WD40 repeat-containing 98.7 3.4E-06 7.4E-11 96.4 23.6 168 36-267 3-194 (541)
236 KOG1523 Actin-related protein 98.7 3.2E-07 7E-12 97.2 13.8 155 440-647 17-173 (361)
237 PRK00178 tolB translocation pr 98.6 1.9E-06 4.2E-11 102.1 22.4 176 8-232 180-365 (430)
238 KOG0974 WD-repeat protein WDR6 98.6 0.00013 2.7E-09 88.8 36.5 146 34-231 95-247 (967)
239 PF10282 Lactonase: Lactonase, 98.6 0.00056 1.2E-08 78.6 41.0 150 48-232 13-176 (345)
240 PRK04792 tolB translocation pr 98.6 2.3E-06 4.9E-11 101.7 21.8 176 8-232 199-384 (448)
241 PRK03629 tolB translocation pr 98.6 2.4E-06 5.1E-11 101.0 21.3 154 28-231 244-407 (429)
242 KOG2321 WD40 repeat protein [G 98.6 4.7E-07 1E-11 102.2 14.1 157 27-231 176-344 (703)
243 KOG1272 WD40-repeat-containing 98.6 2.1E-07 4.6E-12 102.7 10.9 170 6-228 190-360 (545)
244 KOG1334 WD40 repeat protein [G 98.6 1.1E-06 2.3E-11 97.9 15.1 171 24-232 140-314 (559)
245 TIGR03300 assembly_YfgL outer 98.5 0.00012 2.5E-09 85.3 33.1 109 38-168 65-173 (377)
246 KOG2315 Predicted translation 98.5 0.0002 4.3E-09 81.7 33.0 114 486-655 270-394 (566)
247 PRK04922 tolB translocation pr 98.5 6.2E-06 1.4E-10 97.8 21.0 175 7-231 228-412 (433)
248 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00079 1.7E-08 76.2 36.1 123 493-658 200-338 (352)
249 KOG2041 WD40 repeat protein [G 98.5 0.0005 1.1E-08 79.9 34.2 123 23-162 11-149 (1189)
250 KOG1310 WD40 repeat protein [G 98.4 6E-07 1.3E-11 100.7 9.3 175 428-649 46-230 (758)
251 KOG2139 WD40 repeat protein [G 98.4 1.4E-05 3.1E-10 86.1 18.9 177 2-229 115-308 (445)
252 PRK05137 tolB translocation pr 98.4 1.2E-05 2.6E-10 95.5 20.4 177 6-232 225-414 (435)
253 KOG1310 WD40 repeat protein [G 98.4 6.8E-07 1.5E-11 100.3 8.6 124 481-650 45-178 (758)
254 KOG3914 WD repeat protein WDR4 98.3 8E-06 1.7E-10 89.5 14.3 160 441-658 70-231 (390)
255 PRK02889 tolB translocation pr 98.3 1.8E-05 4E-10 93.5 18.7 165 7-222 220-392 (427)
256 PRK01029 tolB translocation pr 98.3 4.1E-05 9E-10 90.3 21.2 158 28-232 232-405 (428)
257 KOG0974 WD-repeat protein WDR6 98.3 5.8E-06 1.3E-10 100.0 13.8 148 441-651 141-289 (967)
258 TIGR03300 assembly_YfgL outer 98.3 0.0007 1.5E-08 78.8 31.2 148 1-166 69-216 (377)
259 KOG4547 WD40 repeat-containing 98.3 0.00011 2.3E-09 84.5 22.9 165 446-662 6-184 (541)
260 KOG2314 Translation initiation 98.2 0.00037 7.9E-09 79.2 24.5 85 8-94 232-331 (698)
261 COG2706 3-carboxymuconate cycl 98.2 0.0022 4.9E-08 70.1 29.6 198 1-232 6-223 (346)
262 COG4946 Uncharacterized protei 98.2 0.0047 1E-07 69.2 32.2 177 5-232 285-479 (668)
263 TIGR02800 propeller_TolB tol-p 98.2 7.5E-05 1.6E-09 88.1 20.1 166 7-222 214-386 (417)
264 PF10282 Lactonase: Lactonase, 98.2 0.0012 2.7E-08 75.7 28.9 191 5-231 60-276 (345)
265 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00042 9.1E-09 78.4 24.0 190 5-233 75-333 (352)
266 KOG1354 Serine/threonine prote 98.1 7.9E-05 1.7E-09 80.0 16.9 125 445-586 226-362 (433)
267 PF00400 WD40: WD domain, G-be 98.1 7.3E-06 1.6E-10 61.4 6.7 37 545-581 3-39 (39)
268 KOG2314 Translation initiation 98.1 0.00041 8.8E-09 78.9 22.7 117 477-644 439-561 (698)
269 PRK04792 tolB translocation pr 98.1 0.00014 3E-09 86.6 20.4 152 29-230 264-425 (448)
270 KOG1409 Uncharacterized conser 98.1 4E-05 8.6E-10 82.4 13.7 174 443-651 34-271 (404)
271 KOG4190 Uncharacterized conser 98.1 1.3E-05 2.9E-10 89.8 9.8 185 428-663 731-917 (1034)
272 PRK00178 tolB translocation pr 98.1 0.00017 3.7E-09 85.6 20.3 153 28-230 244-406 (430)
273 PRK01029 tolB translocation pr 98.1 0.00065 1.4E-08 80.2 24.2 183 7-233 165-362 (428)
274 KOG3914 WD repeat protein WDR4 98.0 2.6E-05 5.6E-10 85.6 10.9 121 29-168 110-233 (390)
275 PF00957 Synaptobrevin: Synapt 98.0 8.8E-06 1.9E-10 73.5 5.8 49 1002-1050 14-62 (89)
276 COG4946 Uncharacterized protei 98.0 0.0005 1.1E-08 76.7 19.4 129 20-167 353-486 (668)
277 KOG1064 RAVE (regulator of V-A 98.0 1.5E-05 3.3E-10 100.5 8.3 170 2-232 2225-2400(2439)
278 PRK04043 tolB translocation pr 97.9 0.004 8.6E-08 73.2 27.7 154 28-232 189-359 (419)
279 COG5354 Uncharacterized protei 97.9 0.004 8.8E-08 70.6 25.2 110 486-650 274-395 (561)
280 KOG0860 Synaptobrevin/VAMP-lik 97.9 1.1E-05 2.4E-10 73.6 4.3 51 1002-1056 40-90 (116)
281 PLN02919 haloacid dehalogenase 97.9 0.0042 9E-08 81.1 29.5 213 4-233 587-836 (1057)
282 KOG0280 Uncharacterized conser 97.9 0.00046 9.9E-09 73.0 16.0 161 447-658 87-250 (339)
283 PLN02919 haloacid dehalogenase 97.9 0.0013 2.9E-08 85.6 24.1 183 30-233 686-891 (1057)
284 PF11768 DUF3312: Protein of u 97.9 0.0011 2.3E-08 77.1 20.3 138 9-167 186-338 (545)
285 COG5354 Uncharacterized protei 97.8 0.025 5.5E-07 64.4 29.9 101 447-587 290-399 (561)
286 PF11768 DUF3312: Protein of u 97.8 0.0013 2.8E-08 76.5 19.8 108 126-267 259-367 (545)
287 PF15492 Nbas_N: Neuroblastoma 97.8 0.0095 2E-07 63.6 24.4 39 552-590 228-266 (282)
288 KOG2695 WD40 repeat protein [G 97.8 7.5E-05 1.6E-09 80.2 8.6 130 487-658 253-384 (425)
289 KOG0309 Conserved WD40 repeat- 97.7 0.0004 8.8E-09 81.1 13.8 125 63-232 20-147 (1081)
290 PF00400 WD40: WD domain, G-be 97.7 0.00011 2.3E-09 55.0 6.3 29 199-228 11-39 (39)
291 PRK11138 outer membrane biogen 97.7 0.065 1.4E-06 62.8 32.5 135 447-649 258-393 (394)
292 COG5170 CDC55 Serine/threonine 97.7 7.9E-05 1.7E-09 78.8 6.6 202 1-232 40-311 (460)
293 KOG4532 WD40-like repeat conta 97.6 0.0016 3.5E-08 68.1 15.7 153 448-653 131-285 (344)
294 KOG2315 Predicted translation 97.6 0.0013 2.9E-08 75.2 15.9 129 49-231 252-391 (566)
295 COG2706 3-carboxymuconate cycl 97.6 0.05 1.1E-06 59.9 27.1 189 6-231 63-275 (346)
296 KOG2114 Vacuolar assembly/sort 97.5 0.0016 3.4E-08 78.1 15.9 185 1-231 39-244 (933)
297 KOG4714 Nucleoporin [Nuclear s 97.5 0.00015 3.3E-09 75.2 6.7 74 555-651 181-255 (319)
298 KOG4714 Nucleoporin [Nuclear s 97.5 0.0003 6.5E-09 73.1 8.7 76 127-231 180-255 (319)
299 KOG4532 WD40-like repeat conta 97.5 0.0065 1.4E-07 63.7 18.1 196 34-297 80-280 (344)
300 PF13360 PQQ_2: PQQ-like domai 97.5 0.0063 1.4E-07 65.6 19.0 148 5-168 1-150 (238)
301 PRK04043 tolB translocation pr 97.5 0.0067 1.5E-07 71.3 20.5 137 7-163 213-362 (419)
302 KOG2066 Vacuolar assembly/sort 97.5 0.0027 5.9E-08 75.7 16.4 176 2-231 54-234 (846)
303 KOG1409 Uncharacterized conser 97.4 0.0012 2.7E-08 71.2 11.9 159 25-232 113-272 (404)
304 KOG1645 RING-finger-containing 97.4 0.002 4.3E-08 71.0 13.6 75 26-100 193-269 (463)
305 KOG1354 Serine/threonine prote 97.4 0.00081 1.8E-08 72.5 10.5 200 2-231 42-302 (433)
306 PF15492 Nbas_N: Neuroblastoma 97.4 0.013 2.8E-07 62.6 19.3 190 440-657 50-266 (282)
307 KOG0280 Uncharacterized conser 97.4 0.01 2.2E-07 63.2 18.2 184 5-232 44-243 (339)
308 KOG1645 RING-finger-containing 97.4 0.0082 1.8E-07 66.3 17.4 80 124-234 191-270 (463)
309 KOG3617 WD40 and TPR repeat-co 97.3 0.019 4.1E-07 68.6 20.9 71 128-230 61-131 (1416)
310 PF13360 PQQ_2: PQQ-like domai 97.3 0.02 4.2E-07 61.7 20.4 187 1-233 40-233 (238)
311 KOG3621 WD40 repeat-containing 97.3 0.0031 6.7E-08 74.2 13.7 116 440-584 40-155 (726)
312 KOG2066 Vacuolar assembly/sort 97.3 0.019 4E-07 68.8 20.1 137 446-658 50-195 (846)
313 PRK11138 outer membrane biogen 97.3 0.077 1.7E-06 62.2 25.9 185 2-233 125-315 (394)
314 KOG4190 Uncharacterized conser 97.3 0.00076 1.6E-08 76.1 8.2 183 2-232 752-950 (1034)
315 KOG4640 Anaphase-promoting com 97.2 0.001 2.2E-08 77.3 9.1 93 487-607 21-114 (665)
316 KOG2695 WD40 repeat protein [G 97.2 0.0012 2.6E-08 71.3 8.9 130 25-168 251-386 (425)
317 KOG1920 IkappaB kinase complex 97.1 0.11 2.3E-06 65.3 24.6 171 27-231 69-275 (1265)
318 PF08450 SGL: SMP-30/Gluconola 97.0 0.52 1.1E-05 51.2 27.8 175 4-230 19-213 (246)
319 PF08450 SGL: SMP-30/Gluconola 97.0 0.071 1.5E-06 58.0 20.7 171 5-219 58-244 (246)
320 KOG0882 Cyclophilin-related pe 97.0 0.0022 4.8E-08 71.5 8.5 182 445-656 20-237 (558)
321 PF03178 CPSF_A: CPSF A subuni 97.0 0.031 6.7E-07 63.5 18.1 131 7-158 62-202 (321)
322 KOG2079 Vacuolar assembly/sort 96.8 0.021 4.6E-07 70.4 15.7 95 488-609 89-183 (1206)
323 KOG2114 Vacuolar assembly/sort 96.8 0.14 3.1E-06 62.0 22.3 139 441-607 31-180 (933)
324 COG5170 CDC55 Serine/threonine 96.8 0.02 4.4E-07 61.0 13.7 92 68-163 27-122 (460)
325 KOG0859 Synaptobrevin/VAMP-lik 96.8 0.00073 1.6E-08 67.3 2.2 65 985-1056 122-186 (217)
326 PF00780 CNH: CNH domain; Int 96.7 0.69 1.5E-05 51.1 26.1 156 443-654 5-169 (275)
327 smart00320 WD40 WD40 repeats. 96.7 0.0049 1.1E-07 44.0 6.0 37 545-581 4-40 (40)
328 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 1.2 2.6E-05 51.8 26.9 108 547-660 301-408 (415)
329 KOG0309 Conserved WD40 repeat- 96.6 0.006 1.3E-07 71.7 8.1 148 447-651 84-233 (1081)
330 PF08596 Lgl_C: Lethal giant l 96.6 0.064 1.4E-06 62.3 16.7 166 26-232 86-292 (395)
331 KOG4649 PQQ (pyrrolo-quinoline 96.5 1 2.2E-05 47.7 22.9 101 79-232 23-125 (354)
332 KOG4640 Anaphase-promoting com 96.4 0.013 2.9E-07 68.4 9.9 76 126-234 20-96 (665)
333 PRK02888 nitrous-oxide reducta 96.4 0.089 1.9E-06 63.1 16.7 141 7-159 215-405 (635)
334 KOG0882 Cyclophilin-related pe 96.3 0.02 4.3E-07 64.2 10.1 199 2-233 25-234 (558)
335 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.25 5.4E-06 45.9 15.7 103 489-645 2-109 (111)
336 PF06977 SdiA-regulated: SdiA- 96.3 0.43 9.3E-06 51.7 20.0 172 28-229 23-200 (248)
337 KOG1275 PAB-dependent poly(A) 96.3 0.11 2.5E-06 63.0 16.5 157 29-228 180-340 (1118)
338 KOG3621 WD40 repeat-containing 96.2 0.037 8E-07 65.5 12.0 113 493-651 40-155 (726)
339 PF07433 DUF1513: Protein of u 96.2 0.35 7.6E-06 53.4 18.5 179 440-658 57-255 (305)
340 KOG1920 IkappaB kinase complex 96.1 0.36 7.9E-06 60.8 20.5 185 1-232 84-324 (1265)
341 PF07433 DUF1513: Protein of u 96.0 0.55 1.2E-05 51.9 19.2 165 29-233 53-250 (305)
342 PRK02888 nitrous-oxide reducta 95.9 0.62 1.3E-05 56.1 20.6 162 47-231 214-405 (635)
343 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.13 2.9E-06 47.6 11.7 87 1-92 19-109 (111)
344 KOG1275 PAB-dependent poly(A) 95.7 0.071 1.5E-06 64.7 11.4 143 442-648 184-340 (1118)
345 COG3204 Uncharacterized protei 95.6 0.52 1.1E-05 51.0 16.6 175 27-230 86-263 (316)
346 PF08553 VID27: VID27 cytoplas 95.6 0.57 1.2E-05 58.4 19.3 102 501-649 545-646 (794)
347 KOG2395 Protein involved in va 95.5 0.19 4.1E-06 57.9 13.4 182 4-230 302-500 (644)
348 PF08553 VID27: VID27 cytoplas 95.5 0.53 1.2E-05 58.7 18.4 152 30-229 485-646 (794)
349 PF03178 CPSF_A: CPSF A subuni 95.5 0.78 1.7E-05 52.0 18.9 174 7-231 2-203 (321)
350 PF06433 Me-amine-dh_H: Methyl 95.3 6.6 0.00014 44.1 27.7 137 7-164 17-172 (342)
351 KOG2079 Vacuolar assembly/sort 95.3 0.07 1.5E-06 66.0 9.7 114 69-229 89-202 (1206)
352 smart00320 WD40 WD40 repeats. 95.2 0.051 1.1E-06 38.4 5.5 29 199-228 12-40 (40)
353 KOG2444 WD40 repeat protein [G 95.2 0.047 1E-06 56.7 6.9 109 41-168 33-142 (238)
354 COG0823 TolB Periplasmic compo 95.2 0.58 1.3E-05 55.0 16.9 160 23-231 189-359 (425)
355 KOG3617 WD40 and TPR repeat-co 95.2 0.25 5.5E-06 59.4 13.5 111 489-651 18-132 (1416)
356 PF00780 CNH: CNH domain; Int 95.0 0.51 1.1E-05 52.1 15.0 143 1-166 11-173 (275)
357 PF10647 Gmad1: Lipoprotein Lp 94.5 1.7 3.6E-05 47.5 17.3 137 6-157 1-143 (253)
358 COG3391 Uncharacterized conser 94.5 5.5 0.00012 46.4 22.7 183 6-232 95-285 (381)
359 PRK13616 lipoprotein LpqB; Pro 94.4 1.1 2.3E-05 55.1 17.1 185 6-230 328-525 (591)
360 KOG4649 PQQ (pyrrolo-quinoline 94.4 3 6.6E-05 44.3 17.6 113 494-658 18-131 (354)
361 COG0823 TolB Periplasmic compo 94.4 0.43 9.4E-06 56.0 13.1 122 27-166 238-366 (425)
362 PF12894 Apc4_WD40: Anaphase-p 94.3 0.095 2.1E-06 40.9 4.9 32 552-583 10-41 (47)
363 KOG1832 HIV-1 Vpr-binding prot 94.2 0.049 1.1E-06 65.5 4.6 120 484-657 1099-1221(1516)
364 PF04841 Vps16_N: Vps16, N-ter 94.2 7.7 0.00017 45.6 23.0 50 8-59 62-112 (410)
365 KOG4499 Ca2+-binding protein R 94.1 2 4.4E-05 44.9 15.3 50 139-217 222-271 (310)
366 PF04053 Coatomer_WDAD: Coatom 93.9 0.49 1.1E-05 55.8 12.2 140 27-230 33-173 (443)
367 PF08366 LLGL: LLGL2; InterPr 93.9 0.71 1.5E-05 42.6 10.5 42 312-354 56-98 (105)
368 PF12894 Apc4_WD40: Anaphase-p 93.6 0.16 3.5E-06 39.6 5.0 31 487-517 12-42 (47)
369 PF14727 PHTB1_N: PTHB1 N-term 93.5 19 0.00041 42.1 33.4 157 442-648 34-202 (418)
370 KOG3630 Nuclear pore complex, 93.0 1 2.2E-05 56.5 13.1 176 1-223 57-265 (1405)
371 COG3391 Uncharacterized conser 92.7 5.1 0.00011 46.7 18.2 158 31-232 78-241 (381)
372 PF10168 Nup88: Nuclear pore c 92.7 29 0.00064 43.6 25.5 90 69-160 86-181 (717)
373 KOG1832 HIV-1 Vpr-binding prot 92.7 0.11 2.4E-06 62.6 4.3 62 543-607 1091-1152(1516)
374 PF14781 BBS2_N: Ciliary BBSom 92.6 4 8.6E-05 39.4 13.8 114 33-165 5-132 (136)
375 cd00216 PQQ_DH Dehydrogenases 92.5 7.8 0.00017 46.8 20.0 23 211-233 405-427 (488)
376 PF06977 SdiA-regulated: SdiA- 92.4 19 0.00041 39.1 21.1 192 5-226 42-246 (248)
377 KOG2395 Protein involved in va 92.4 1.7 3.7E-05 50.5 12.9 145 447-649 348-499 (644)
378 KOG2444 WD40 repeat protein [G 91.8 0.5 1.1E-05 49.3 7.2 105 445-583 70-177 (238)
379 PF14761 HPS3_N: Hermansky-Pud 91.4 3.6 7.8E-05 43.0 13.1 119 39-162 29-167 (215)
380 cd00216 PQQ_DH Dehydrogenases 91.3 11 0.00023 45.6 19.4 119 39-167 111-273 (488)
381 PF06433 Me-amine-dh_H: Methyl 91.3 9.3 0.0002 43.0 17.0 160 35-233 145-323 (342)
382 PF10168 Nup88: Nuclear pore c 90.8 25 0.00054 44.3 22.1 80 552-651 83-180 (717)
383 KOG1897 Damage-specific DNA bi 90.6 59 0.0013 41.2 50.3 76 552-650 529-613 (1096)
384 PF04053 Coatomer_WDAD: Coatom 90.6 4.9 0.00011 47.5 14.9 58 40-99 118-175 (443)
385 PF10395 Utp8: Utp8 family; I 90.4 23 0.00049 43.5 20.3 71 730-811 193-274 (670)
386 PF14870 PSII_BNR: Photosynthe 89.7 34 0.00073 38.3 19.8 164 16-227 135-301 (302)
387 PF10979 DUF2786: Protein of u 89.4 0.24 5.1E-06 37.8 1.9 39 1012-1050 1-39 (43)
388 PF08728 CRT10: CRT10; InterP 88.5 14 0.0003 45.8 16.8 184 440-649 45-245 (717)
389 KOG1897 Damage-specific DNA bi 88.5 82 0.0018 40.1 41.2 109 488-647 831-939 (1096)
390 COG3386 Gluconolactonase [Carb 87.8 6.3 0.00014 44.3 12.6 98 488-607 164-263 (307)
391 KOG3630 Nuclear pore complex, 87.7 6.3 0.00014 50.0 13.2 163 31-230 46-228 (1405)
392 PRK13616 lipoprotein LpqB; Pro 87.1 10 0.00022 46.8 14.8 102 488-607 398-505 (591)
393 PF07569 Hira: TUP1-like enhan 86.3 3.3 7.2E-05 44.1 9.0 70 27-99 13-97 (219)
394 PF14655 RAB3GAP2_N: Rab3 GTPa 86.1 3.8 8.3E-05 47.7 10.0 102 558-674 6-117 (415)
395 PF14781 BBS2_N: Ciliary BBSom 86.0 19 0.00041 34.8 12.8 118 492-651 4-126 (136)
396 KOG1008 Uncharacterized conser 85.8 0.4 8.7E-06 56.5 1.8 144 454-650 128-275 (783)
397 KOG1008 Uncharacterized conser 85.7 0.41 8.8E-06 56.4 1.8 188 2-233 75-278 (783)
398 PF13449 Phytase-like: Esteras 85.3 36 0.00078 38.7 17.4 117 27-149 20-167 (326)
399 PF10313 DUF2415: Uncharacteri 85.2 2.3 5E-05 32.4 4.9 31 554-584 1-34 (43)
400 PF12234 Rav1p_C: RAVE protein 84.9 29 0.00063 42.6 16.9 78 549-648 25-102 (631)
401 PF10647 Gmad1: Lipoprotein Lp 84.4 41 0.00089 36.7 16.6 99 488-607 67-174 (253)
402 PF00930 DPPIV_N: Dipeptidyl p 84.4 49 0.0011 38.0 18.2 79 6-85 22-118 (353)
403 PF12234 Rav1p_C: RAVE protein 84.3 13 0.00029 45.5 13.7 111 445-583 41-156 (631)
404 PF04841 Vps16_N: Vps16, N-ter 83.7 91 0.002 36.7 20.2 51 456-519 62-112 (410)
405 PF15390 DUF4613: Domain of un 83.0 21 0.00045 42.7 13.8 31 199-230 155-186 (671)
406 PF11635 Med16: Mediator compl 82.6 1.2E+02 0.0026 38.7 22.1 40 552-591 258-297 (753)
407 PF05096 Glu_cyclase_2: Glutam 81.1 53 0.0011 35.8 15.3 154 441-657 52-210 (264)
408 PF02897 Peptidase_S9_N: Proly 81.0 52 0.0011 38.6 17.1 113 29-159 126-261 (414)
409 PLN00033 photosystem II stabil 80.6 1.2E+02 0.0027 35.4 20.2 150 32-227 244-396 (398)
410 PF08728 CRT10: CRT10; InterP 80.2 37 0.00081 42.2 15.4 117 28-158 102-246 (717)
411 PRK13684 Ycf48-like protein; P 80.1 1.2E+02 0.0025 34.7 20.3 155 26-229 172-330 (334)
412 PHA02713 hypothetical protein; 80.0 13 0.00029 45.5 12.0 23 631-653 512-536 (557)
413 COG3490 Uncharacterized protei 79.8 11 0.00024 40.9 9.4 28 631-658 291-318 (366)
414 COG3386 Gluconolactonase [Carb 79.7 1.1E+02 0.0024 34.4 19.8 131 5-158 45-193 (307)
415 PF07569 Hira: TUP1-like enhan 79.6 7.9 0.00017 41.3 8.6 75 554-653 13-98 (219)
416 PF12657 TFIIIC_delta: Transcr 79.6 7.6 0.00016 39.7 8.2 30 555-586 6-35 (173)
417 KOG4460 Nuclear pore complex, 79.1 25 0.00054 41.3 12.5 83 128-233 105-201 (741)
418 TIGR03075 PQQ_enz_alc_DH PQQ-d 77.4 1.8E+02 0.0039 35.5 21.2 169 39-233 121-336 (527)
419 PF14727 PHTB1_N: PTHB1 N-term 76.1 1.7E+02 0.0037 34.5 24.5 48 1-52 41-93 (418)
420 PF10313 DUF2415: Uncharacteri 74.6 7.4 0.00016 29.7 4.6 30 488-517 2-34 (43)
421 PF14870 PSII_BNR: Photosynthe 74.6 1.3E+02 0.0029 33.7 16.7 150 441-647 152-301 (302)
422 PLN00033 photosystem II stabil 74.5 1.3E+02 0.0028 35.3 17.2 151 441-648 246-397 (398)
423 KOG1916 Nuclear protein, conta 73.9 4.9 0.00011 49.5 5.5 124 28-164 134-272 (1283)
424 KOG1898 Splicing factor 3b, su 72.3 77 0.0017 40.6 15.0 93 552-658 581-681 (1205)
425 TIGR03075 PQQ_enz_alc_DH PQQ-d 71.9 37 0.0008 41.4 12.6 114 39-168 70-199 (527)
426 PF11635 Med16: Mediator compl 71.8 1.3E+02 0.0029 38.4 18.0 189 34-233 56-292 (753)
427 TIGR03074 PQQ_membr_DH membran 70.7 37 0.00081 43.1 12.5 121 38-167 194-353 (764)
428 PF00930 DPPIV_N: Dipeptidyl p 70.5 9.8 0.00021 43.8 7.0 62 139-232 3-73 (353)
429 PF11715 Nup160: Nucleoporin N 70.2 12 0.00027 45.8 8.2 30 631-660 229-258 (547)
430 PF12768 Rax2: Cortical protei 69.9 1.2E+02 0.0027 33.5 15.0 120 456-609 17-147 (281)
431 PF14583 Pectate_lyase22: Olig 69.7 56 0.0012 37.6 12.4 168 16-231 20-223 (386)
432 KOG1916 Nuclear protein, conta 69.4 4.6 0.0001 49.8 3.9 80 488-582 182-264 (1283)
433 PF02897 Peptidase_S9_N: Proly 68.0 1.1E+02 0.0024 35.8 15.4 71 129-232 126-212 (414)
434 TIGR03074 PQQ_membr_DH membran 67.7 3.5E+02 0.0076 34.6 22.1 64 39-104 261-349 (764)
435 PF11715 Nup160: Nucleoporin N 66.7 24 0.00052 43.3 9.7 96 496-593 156-258 (547)
436 TIGR02276 beta_rpt_yvtn 40-res 66.0 21 0.00045 26.4 5.7 39 36-74 1-40 (42)
437 PRK13615 lipoprotein LpqB; Pro 65.4 2.9E+02 0.0062 33.9 18.0 109 30-157 337-448 (557)
438 PF02333 Phytase: Phytase; In 65.4 1.6E+02 0.0034 34.1 14.9 128 29-166 158-299 (381)
439 KOG4441 Proteins containing BT 64.5 1.7E+02 0.0037 36.1 16.3 65 443-518 331-406 (571)
440 TIGR02604 Piru_Ver_Nterm putat 64.5 2.6E+02 0.0056 32.3 17.2 68 24-96 11-95 (367)
441 COG5167 VID27 Protein involved 63.3 1.5E+02 0.0033 34.9 14.0 176 4-231 434-633 (776)
442 PF05935 Arylsulfotrans: Aryls 62.3 1.6E+02 0.0035 35.4 15.4 131 32-168 153-311 (477)
443 PF05096 Glu_cyclase_2: Glutam 61.8 2.5E+02 0.0054 30.8 19.3 167 18-233 34-206 (264)
444 KOG4499 Ca2+-binding protein R 61.3 41 0.00089 35.6 8.4 46 559-607 217-262 (310)
445 KOG1898 Splicing factor 3b, su 61.2 1.2E+02 0.0026 38.9 13.7 129 5-155 910-1045(1205)
446 TIGR03118 PEPCTERM_chp_1 conse 59.9 2.9E+02 0.0062 30.9 16.9 150 2-168 105-289 (336)
447 PF10214 Rrn6: RNA polymerase 59.3 2.7E+02 0.0059 35.7 17.4 91 125-232 144-234 (765)
448 PHA02790 Kelch-like protein; P 59.1 1.3E+02 0.0028 36.2 13.9 65 443-518 317-386 (480)
449 PHA02713 hypothetical protein; 58.9 2.9E+02 0.0064 33.9 17.0 22 211-232 512-535 (557)
450 COG4590 ABC-type uncharacteriz 58.7 30 0.00065 39.8 7.5 160 27-232 221-388 (733)
451 TIGR02276 beta_rpt_yvtn 40-res 57.7 44 0.00096 24.6 6.2 31 563-593 1-32 (42)
452 PF01011 PQQ: PQQ enzyme repea 57.3 15 0.00033 27.0 3.5 23 634-656 2-24 (38)
453 KOG2377 Uncharacterized conser 56.8 1E+02 0.0023 35.8 11.2 79 23-103 63-146 (657)
454 PHA02790 Kelch-like protein; P 56.7 4.2E+02 0.0092 31.8 18.1 98 48-163 287-389 (480)
455 PF12768 Rax2: Cortical protei 56.7 1.5E+02 0.0032 33.0 12.5 85 552-657 35-130 (281)
456 PRK13684 Ycf48-like protein; P 56.2 3.5E+02 0.0076 30.8 16.1 116 487-649 215-330 (334)
457 COG4880 Secreted protein conta 55.7 1E+02 0.0023 35.4 10.9 94 7-100 406-504 (603)
458 PF14779 BBS1: Ciliary BBSome 55.3 85 0.0018 34.2 10.0 58 566-647 196-255 (257)
459 PF05694 SBP56: 56kDa selenium 55.2 2E+02 0.0042 33.8 13.3 40 553-592 311-354 (461)
460 KOG2063 Vacuolar assembly/sort 55.1 3.9E+02 0.0084 34.5 17.0 93 730-844 212-308 (877)
461 TIGR03606 non_repeat_PQQ dehyd 54.6 1.8E+02 0.004 34.5 13.5 58 29-86 32-103 (454)
462 KOG0861 SNARE protein YKT6, sy 54.2 15 0.00033 36.6 3.8 40 1005-1044 151-190 (198)
463 KOG1900 Nuclear pore complex, 53.6 1.3E+02 0.0027 39.8 12.5 164 441-651 87-273 (1311)
464 COG3490 Uncharacterized protei 53.6 3.5E+02 0.0075 29.9 14.9 36 128-164 281-316 (366)
465 smart00564 PQQ beta-propeller 53.2 20 0.00042 25.1 3.4 22 634-655 8-29 (33)
466 PHA03098 kelch-like protein; P 53.2 1.2E+02 0.0027 36.8 12.6 24 444-467 342-370 (534)
467 COG5143 SNC1 Synaptobrevin/VAM 52.0 22 0.00048 36.4 4.7 51 1002-1056 140-190 (190)
468 PF13449 Phytase-like: Esteras 50.5 1.5E+02 0.0032 33.7 11.7 71 29-100 87-193 (326)
469 KOG2247 WD40 repeat-containing 49.4 3.6 7.7E-05 47.6 -1.5 104 447-587 89-192 (615)
470 COG1520 FOG: WD40-like repeat 48.3 4.8E+02 0.01 30.0 17.8 100 2-104 73-176 (370)
471 KOG4460 Nuclear pore complex, 48.2 3.2E+02 0.0069 32.6 13.4 99 486-593 103-208 (741)
472 PF13570 PQQ_3: PQQ-like domai 46.1 54 0.0012 24.2 5.0 20 632-651 21-40 (40)
473 KOG2280 Vacuolar assembly/sort 45.6 2.7E+02 0.0058 34.7 12.9 193 424-656 26-252 (829)
474 KOG1896 mRNA cleavage and poly 45.3 3.3E+02 0.0072 35.8 14.1 135 6-157 1064-1212(1366)
475 PHA03098 kelch-like protein; P 43.4 6.8E+02 0.015 30.4 17.7 24 37-60 342-370 (534)
476 smart00564 PQQ beta-propeller 42.9 48 0.001 23.0 4.1 27 564-591 6-32 (33)
477 PF10214 Rrn6: RNA polymerase 42.7 8.5E+02 0.018 31.3 24.3 30 553-582 145-175 (765)
478 PF05694 SBP56: 56kDa selenium 42.5 1.2E+02 0.0027 35.4 9.2 147 7-160 157-344 (461)
479 TIGR03118 PEPCTERM_chp_1 conse 41.7 5.5E+02 0.012 28.8 16.5 182 447-658 102-287 (336)
480 PF14761 HPS3_N: Hermansky-Pud 41.4 1.3E+02 0.0029 31.7 8.6 95 1-96 32-162 (215)
481 KOG1900 Nuclear pore complex, 40.7 3E+02 0.0066 36.5 13.0 119 34-160 135-274 (1311)
482 PF07995 GSDH: Glucose / Sorbo 40.4 2.6E+02 0.0057 31.7 11.8 109 30-150 5-135 (331)
483 TIGR02604 Piru_Ver_Nterm putat 39.1 5.3E+02 0.011 29.7 14.3 17 488-504 15-31 (367)
484 KOG1983 Tomosyn and related SN 38.9 2.2E+02 0.0047 37.6 11.9 76 549-655 194-269 (993)
485 KOG4441 Proteins containing BT 38.5 8.5E+02 0.018 30.1 20.5 65 26-91 322-393 (571)
486 PF00957 Synaptobrevin: Synapt 37.1 85 0.0018 28.0 5.7 52 1005-1056 10-64 (89)
487 PRK13613 lipoprotein LpqB; Pro 36.8 7.2E+02 0.016 30.9 15.4 159 28-230 364-537 (599)
488 PF01011 PQQ: PQQ enzyme repea 36.6 81 0.0017 23.1 4.5 27 567-593 2-28 (38)
489 KOG3616 Selective LIM binding 36.2 69 0.0015 39.1 6.1 31 488-518 16-46 (1636)
490 PF12341 DUF3639: Protein of u 34.2 87 0.0019 21.5 3.8 25 555-581 3-27 (27)
491 PF02333 Phytase: Phytase; In 34.0 8.1E+02 0.018 28.5 19.2 151 36-230 66-237 (381)
492 COG1520 FOG: WD40-like repeat 33.9 7.7E+02 0.017 28.2 18.3 81 77-168 195-278 (370)
493 PF12657 TFIIIC_delta: Transcr 33.6 1.7E+02 0.0037 29.8 8.0 32 199-231 85-122 (173)
494 PF08801 Nucleoporin_N: Nup133 31.8 9E+02 0.019 28.3 15.6 32 199-231 189-220 (422)
495 KOG2377 Uncharacterized conser 31.7 4.7E+02 0.01 30.7 11.4 35 549-583 62-96 (657)
496 TIGR01063 gyrA DNA gyrase, A s 31.6 1.3E+03 0.027 30.0 17.3 196 1-231 550-770 (800)
497 PRK05561 DNA topoisomerase IV 31.3 1E+03 0.022 30.5 15.7 115 29-159 498-619 (742)
498 smart00036 CNH Domain found in 28.8 8.5E+02 0.019 27.2 25.4 58 446-517 14-74 (302)
499 PRK10115 protease 2; Provision 28.8 1.2E+03 0.025 29.6 15.9 113 70-230 129-255 (686)
500 PF12352 V-SNARE_C: Snare regi 28.5 1.6E+02 0.0035 24.5 5.7 46 1004-1053 21-66 (66)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-36 Score=340.81 Aligned_cols=502 Identities=13% Similarity=0.132 Sum_probs=346.4
Q ss_pred ccccCCcEEEEcCCCeEEEE--EcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC-CCCEEEEEEecC
Q 001538 2 CLCRDGRIKVIGGDGIEGLL--ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISG 78 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~~--~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~sp~ 78 (1057)
.+.+.+-+++|.-+..+++- ..-+..||--|+|.|.++.|++++.||.++|||+..+.+.++++. ++.|.++.|.|.
T Consensus 79 ~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~ 158 (775)
T KOG0319|consen 79 TASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPH 158 (775)
T ss_pred EeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCc
Confidence 45566777777655443322 223578999999999999999999999999999999999999985 789999999998
Q ss_pred CcE--EEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEE
Q 001538 79 SHF--MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 156 (1057)
Q Consensus 79 ~~~--l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWd 156 (1057)
..+ |++|..|+.+++|++...+-++. . -..|.+.|++++|.+ ++.-++++++|..|.|||
T Consensus 159 ~~~~lL~sg~~D~~v~vwnl~~~~tcl~-------~---------~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd 220 (775)
T KOG0319|consen 159 WNRWLLASGATDGTVRVWNLNDKRTCLH-------T---------MILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWD 220 (775)
T ss_pred cchhheeecCCCceEEEEEcccCchHHH-------H---------HHhhhhheeeeeecc--CCceEEEeccCcEEEEee
Confidence 664 78999999999999865432221 1 123678899999999 466799999999999999
Q ss_pred ccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCC-----CCEEEEEEcCCcEEEEeCCC
Q 001538 157 VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-----GSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pd-----G~~latg~~DG~I~lWd~~~ 231 (1057)
+.+-+...+..- ...+-++.+. ++ |.++.|++.+|.++.||.++
T Consensus 221 ~~~~~~l~~lp~------------------------------ye~~E~vv~l-~~~~~~~~~~~~TaG~~g~~~~~d~es 269 (775)
T KOG0319|consen 221 LVQYKKLKTLPL------------------------------YESLESVVRL-REELGGKGEYIITAGGSGVVQYWDSES 269 (775)
T ss_pred hhhhhhhheech------------------------------hhheeeEEEe-chhcCCcceEEEEecCCceEEEEeccc
Confidence 976665554432 3456677777 66 67999999999999999988
Q ss_pred CCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeee
Q 001538 232 TASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVS 311 (1057)
Q Consensus 232 ~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~ 311 (1057)
+....-+....... +..+.- ....+++++...+ +.+-+++.+ .++-.
T Consensus 270 ~~~~~~~~~~~~~e--------------~~~~~~-------~~~~~~~l~vtae-----Qnl~l~d~~------~l~i~- 316 (775)
T KOG0319|consen 270 GKCVYKQRQSDSEE--------------IDHLLA-------IESMSQLLLVTAE-----QNLFLYDED------ELTIV- 316 (775)
T ss_pred chhhhhhccCCchh--------------hhccee-------ccccCceEEEEcc-----ceEEEEEcc------ccEEe-
Confidence 75321111110000 111111 1122333333221 345555422 22111
Q ss_pred eeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEE
Q 001538 312 RVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAE 391 (1057)
Q Consensus 312 ~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~ 391 (1057)
+.-...++++.||.++.+.- ..+++.+|.++|++|+..+..+ .-+++|...|..+.
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~-------~~laVATNs~~lr~y~~~~~~c-----------------~ii~GH~e~vlSL~ 372 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEE-------SHLAVATNSPELRLYTLPTSYC-----------------QIIPGHTEAVLSLD 372 (775)
T ss_pred hhhcCCchhheeeeecCCcc-------ceEEEEeCCCceEEEecCCCce-----------------EEEeCchhheeeee
Confidence 11233566799999876432 3788889999999998433222 23455665555554
Q ss_pred ------EEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCC
Q 001538 392 ------FMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 465 (1057)
Q Consensus 392 ------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~ 465 (1057)
+...+..+..+..|.- .++.+.... -. ..+|+...+..++-......++++++.|+++++|++...
T Consensus 373 ~~~~g~llat~sKD~svilWr~----~~~~~~~~~-~a---~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 373 VWSSGDLLATGSKDKSVILWRL----NNNCSKSLC-VA---QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred ecccCcEEEEecCCceEEEEEe----cCCcchhhh-hh---hhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence 2222233344555621 111010000 00 024444444333223445678999999999999998762
Q ss_pred cee-EEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcce
Q 001538 466 VFK-LICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 544 (1057)
Q Consensus 466 ~l~-~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~ 544 (1057)
... ....++.. -....|...|+||+++|+...+|+|++|.+.+||+++....
T Consensus 445 ~~~~~~~~~~~~---~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l------------------------ 497 (775)
T KOG0319|consen 445 KETAFPIVLTCR---YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL------------------------ 497 (775)
T ss_pred ccccccceehhh---HHHHhhcccccceEecCCCceEEecccccceeeecccCceE------------------------
Confidence 210 00011100 00125778999999999999999999999999999973322
Q ss_pred eeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCC
Q 001538 545 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 624 (1057)
Q Consensus 545 ~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~ 624 (1057)
..++++|+..|.|+.|++..+.||++|.|++|+||.+.+.+++.++ +||+..|..++|.
T Consensus 498 -~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~F~----------------- 556 (775)
T KOG0319|consen 498 -LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRASFI----------------- 556 (775)
T ss_pred -EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeeeee-----------------
Confidence 2488999999999999999999999999999999999999999876 5699999999998
Q ss_pred cCCCCCCCcEEEEEecCCeEEEEeCCCcceeecCccccCCcceeEEEEe
Q 001538 625 EVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEV 673 (1057)
Q Consensus 625 ~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~i~p~~~~~~~~~~~ 673 (1057)
.++..|++++.||-|++|+..|++++.+. ..+..+++.+..
T Consensus 557 -----~~~~qliS~~adGliKlWnikt~eC~~tl---D~H~DrvWaL~~ 597 (775)
T KOG0319|consen 557 -----RNGKQLISAGADGLIKLWNIKTNECEMTL---DAHNDRVWALSV 597 (775)
T ss_pred -----eCCcEEEeccCCCcEEEEeccchhhhhhh---hhccceeEEEee
Confidence 55788999999999999999999999876 445567676653
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=310.93 Aligned_cols=362 Identities=15% Similarity=0.188 Sum_probs=268.8
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC-CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
+..+|.+++|+|++.+|++++.|.++++||+.+..++++.+. ..-|-|++++||++++++|+.+|.|++|+ +..++.
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd--pktg~~ 191 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD--PKTGQQ 191 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec--CCCCCc
Confidence 467899999999999999999999999999999999999975 47899999999999999999999777765 544433
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcC---CCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN---SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 180 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~---d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (1057)
.. - ....|...|++++|+|- -...+|++++.||.|+|||+..+.++..+.+ |
T Consensus 192 ~g--~------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg---------H-- 246 (480)
T KOG0271|consen 192 IG--R------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG---------H-- 246 (480)
T ss_pred cc--c------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc---------C--
Confidence 31 0 12456789999999983 1345688889999999999999999988876 4
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccE
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 260 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI 260 (1057)
+.+|+|++|- -+ .+|++|+.|++|++|+..+|.... . + ..|...|
T Consensus 247 ------------------T~~VTCvrwG-G~-gliySgS~DrtIkvw~a~dG~~~r---------~----l--kGHahwv 291 (480)
T KOG0271|consen 247 ------------------TASVTCVRWG-GE-GLIYSGSQDRTIKVWRALDGKLCR---------E----L--KGHAHWV 291 (480)
T ss_pred ------------------ccceEEEEEc-CC-ceEEecCCCceEEEEEccchhHHH---------h----h--cccchhe
Confidence 8899999998 34 479999999999999997763110 0 0 1122222
Q ss_pred EEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceE
Q 001538 261 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 340 (1057)
Q Consensus 261 ~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~ 340 (1057)
..++.+. + ..|+ . |
T Consensus 292 N~lalsT------------------d----y~LR-----------------------------------t---g------ 305 (480)
T KOG0271|consen 292 NHLALST------------------D----YVLR-----------------------------------T---G------ 305 (480)
T ss_pred eeeeccc------------------h----hhhh-----------------------------------c---c------
Confidence 2221100 0 0000 0 0
Q ss_pred EEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCC
Q 001538 341 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 420 (1057)
Q Consensus 341 lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (1057)
-|| +.+ ..+... +..+ -++..+ +...
T Consensus 306 -----------af~----------~t~-------~~~~~~-------------se~~----~~Al~r--------Y~~~- 331 (480)
T KOG0271|consen 306 -----------AFD----------HTG-------RKPKSF-------------SEEQ----KKALER--------YEAV- 331 (480)
T ss_pred -----------ccc----------ccc-------ccCCCh-------------HHHH----HHHHHH--------HHHh-
Confidence 011 000 000000 0000 011111 1000
Q ss_pred CCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCe
Q 001538 421 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS 500 (1057)
Q Consensus 421 ~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~ 500 (1057)
....+..+++|+.|+++-+|+..... +++. .+.||..-|+.|.|+||+++
T Consensus 332 --------------------~~~~~erlVSgsDd~tlflW~p~~~k-kpi~---------rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 332 --------------------LKDSGERLVSGSDDFTLFLWNPFKSK-KPIT---------RMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred --------------------hccCcceeEEecCCceEEEecccccc-cchh---------hhhchhhheeeEEECCCccE
Confidence 11223579999999999999975432 1221 23488889999999999999
Q ss_pred EEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 001538 501 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 580 (1057)
Q Consensus 501 Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vw 580 (1057)
+|+|+-|..|++|+-.+.++. ..|.+|-++|..++||.|.++|++|+.|.+++||
T Consensus 382 IASaSFDkSVkLW~g~tGk~l-------------------------asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 382 IASASFDKSVKLWDGRTGKFL-------------------------ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred EEEeecccceeeeeCCCcchh-------------------------hhhhhccceeEEEEeccCccEEEEcCCCceEEEE
Confidence 999999999999998877653 4788999999999999999999999999999999
Q ss_pred eCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 581 DMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 581 Di~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
|+++.++.+.+ .||...|.++.|+ |||..+++|++|..+++|-
T Consensus 437 ~V~tkKl~~DL---pGh~DEVf~vDws----------------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 437 DVRTKKLKQDL---PGHADEVFAVDWS----------------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EeeeeeecccC---CCCCceEEEEEec----------------------CCCceeecCCCceEEEeec
Confidence 99998876653 5799999999998 9999999999999999993
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-32 Score=306.80 Aligned_cols=476 Identities=14% Similarity=0.178 Sum_probs=323.4
Q ss_pred CCcEEEEcC-CCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEE
Q 001538 6 DGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 84 (1057)
Q Consensus 6 dG~I~v~g~-~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~v 84 (1057)
.++|-||.. ++...++....+..|+.++.+|+|.+|++++.+|...+-++..+..+|.+.+...|.|+.|+|++.++++
T Consensus 34 GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav 113 (893)
T KOG0291|consen 34 GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAV 113 (893)
T ss_pred CCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEE
Confidence 467778864 5566777777888999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcEEEEEEeCCCC-ceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEE
Q 001538 85 GDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 163 (1057)
Q Consensus 85 G~~~G~v~v~~~d~~~~-~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~ 163 (1057)
|..+= +.||...-... .+. ||..+. .-..|...|++|.|+- |.+.++++++|.+++||++...+-.
T Consensus 114 ~~gn~-lqiw~~P~~~~~~~~--pFvl~r--------~~~g~fddi~si~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~ 180 (893)
T KOG0291|consen 114 GCGNL-LQIWHAPGEIKNEFN--PFVLHR--------TYLGHFDDITSIDWSD--DSRLLVTGSRDLSARLFGVDGNKNL 180 (893)
T ss_pred Eecce-eEEEecCcchhcccC--cceEee--------eecCCccceeEEEecc--CCceEEeccccceEEEEEecccccc
Confidence 98775 68887643221 222 555432 1134567899999997 6888999999999999999866553
Q ss_pred --EEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC--ccC---
Q 001538 164 --FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA--STK--- 236 (1057)
Q Consensus 164 --~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~--~~~--- 236 (1057)
+.+.+ | ...|.+.-|. .|...+.|.+.||.|.+|...... ...
T Consensus 181 ~~~~l~g---------H--------------------kd~VvacfF~-~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~k 230 (893)
T KOG0291|consen 181 FTYALNG---------H--------------------KDYVVACFFG-ANSLDLYTVSKDGALFVWTCDLRPPELDKAEK 230 (893)
T ss_pred ceEeccC---------C--------------------CcceEEEEec-cCcceEEEEecCceEEEEEecCCCcccccccc
Confidence 23332 2 6778777788 899999999999999999876321 000
Q ss_pred CCCC--------CCCCcceeeecccccCCccEEEEEeeccCc-----CCCCCCceEEEecCCCCCCcceEEEEEcCcccc
Q 001538 237 GQQT--------GSRNNVVKLELSSAERRLPVIVLHWSTNKE-----SRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 303 (1057)
Q Consensus 237 ~~~~--------~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~-----~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~ 303 (1057)
+..+ ...+.+.+..+ ....-+|....+ +.-.....++++|... ....+.++.-
T Consensus 231 d~eg~~d~~~~~~~Eek~~~~~~-------~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss----G~f~LyelP~--- 296 (893)
T KOG0291|consen 231 DEEGSDDEEMDEDGEEKTHKIFW-------YKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS----GEFGLYELPD--- 296 (893)
T ss_pred cccccccccccccchhhhcceEE-------EEEEeeeecccccceeeeeccCCceEEEEEecC----CeeEEEecCC---
Confidence 0000 00000111000 001112222110 0122356677776654 2233333210
Q ss_pred cccceeeeeeeecCC-CcccEEEEeecCCCCCCCCceEEEEE--cCCCeeEEeeccchhhhhcccCCCCCCCCccccccc
Q 001538 304 MENLRCVSRVDITLT-GSFADMILLSSAGATVGNHKADLFVL--TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 380 (1057)
Q Consensus 304 ~~~~~~~~~~~l~~~-~~~~d~~~~p~~~~~g~~~~~~lv~l--~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l 380 (1057)
+.. ...+... .++.++.+-..+ ..+++ ..-|||.+|+.. ...+.+..
T Consensus 297 f~l-----ih~LSis~~~I~t~~~N~tG---------DWiA~g~~klgQLlVweWq----------------sEsYVlKQ 346 (893)
T KOG0291|consen 297 FNL-----IHSLSISDQKILTVSFNSTG---------DWIAFGCSKLGQLLVWEWQ----------------SESYVLKQ 346 (893)
T ss_pred ceE-----EEEeecccceeeEEEecccC---------CEEEEcCCccceEEEEEee----------------ccceeeec
Confidence 000 1111111 234444433222 12333 344899999832 22333444
Q ss_pred CCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEE
Q 001538 381 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIW 460 (1057)
Q Consensus 381 ~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriW 460 (1057)
..|.+.+++++ .++|+++|+||+.||.||+|
T Consensus 347 QgH~~~i~~l~-------------------------------------------------YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 347 QGHSDRITSLA-------------------------------------------------YSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred cccccceeeEE-------------------------------------------------ECCCCcEEEeccCCCcEEEE
Confidence 44555554444 45677799999999999999
Q ss_pred ecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceee--------ee-cCC
Q 001538 461 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF--------VL-ETK 531 (1057)
Q Consensus 461 d~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~--------~~-~~~ 531 (1057)
|...+. .+. .+..|+..|+.+.|+..++.|++.+.||+|+.||+...+++..+.. +. +..
T Consensus 378 n~~Sgf--C~v---------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 378 NTQSGF--CFV---------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred eccCce--EEE---------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence 998876 222 2457889999999999999999999999999999988766544321 11 112
Q ss_pred Cce-----------EEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCC-eEEEEeecCCCCCC
Q 001538 532 SEV-----------HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL-SVLFFTDDISGSSS 599 (1057)
Q Consensus 532 ~~~-----------~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~-~~l~~~~~~~g~~~ 599 (1057)
+++ +.+..+.|. .+-.+++|.+||.+|+|+|+|..||+|+.|.+|++||+-.. ..+-++. +.+
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~s 521 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRS 521 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----ecc
Confidence 332 333334443 34578899999999999999999999999999999999544 2223333 567
Q ss_pred CeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCccee
Q 001538 600 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 655 (1057)
Q Consensus 600 ~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i 655 (1057)
-|+.++|. |||.-|+++|-||.|.+||.+.+...
T Consensus 522 dvl~vsfr----------------------PdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 522 DVLAVSFR----------------------PDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred ceeEEEEc----------------------CCCCeEEEEEecceEEEEEhhhceee
Confidence 89999998 99999999999999999998765444
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-33 Score=317.19 Aligned_cols=481 Identities=14% Similarity=0.192 Sum_probs=328.2
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec--CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCcee
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~--~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~ 104 (1057)
..++++...||+.+|++++...-+++|++.+++++.+.+ ++++|.-++++|.+..+++|+.||.|+||+|..
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~------ 136 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKN------ 136 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeC------
Confidence 458999999999999999999999999999999988886 478999999999999999999999999999865
Q ss_pred ccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE-EEEecCCcccccCCccCCCCC
Q 001538 105 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 105 ~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~-~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
.|.++. -+++++.|.++.|+|.-.-..|+.|+.|+++++||+.++.. +++... |
T Consensus 137 --~~~th~---------fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~---------H----- 191 (775)
T KOG0319|consen 137 --GYCTHS---------FKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMIL---------H----- 191 (775)
T ss_pred --CEEEEE---------ecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHh---------h-----
Confidence 344442 24578899999999964445578889999999999986655 333332 3
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEE
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 263 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l 263 (1057)
...|+++.|. +|+..+++++.|..|.+||+..-...... | -...+-.+
T Consensus 192 ---------------~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~l------p----------~ye~~E~v 239 (775)
T KOG0319|consen 192 ---------------KSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTL------P----------LYESLESV 239 (775)
T ss_pred ---------------hhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhhee------c----------hhhheeeE
Confidence 7899999999 99999999999999999999443211100 0 11112222
Q ss_pred EeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEE
Q 001538 264 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFV 343 (1057)
Q Consensus 264 ~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~ 343 (1057)
...... .+..++-++..|++. .++.++-. +.+|..+..-+...++.+...++..+ .+++
T Consensus 240 v~l~~~--~~~~~~~~~TaG~~g-----~~~~~d~e------s~~~~~~~~~~~~~e~~~~~~~~~~~--------~~l~ 298 (775)
T KOG0319|consen 240 VRLREE--LGGKGEYIITAGGSG-----VVQYWDSE------SGKCVYKQRQSDSEEIDHLLAIESMS--------QLLL 298 (775)
T ss_pred EEechh--cCCcceEEEEecCCc-----eEEEEecc------cchhhhhhccCCchhhhcceeccccC--------ceEE
Confidence 111110 111222334445443 46665522 22222111111123355555555443 6778
Q ss_pred EcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEE----------eccCCCCchhhhHHHHhhcc
Q 001538 344 LTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFM----------LLPFGGHSSKGLSEIATFTK 413 (1057)
Q Consensus 344 l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~----------~~~~~~~~~~~w~~~~~~~~ 413 (1057)
++++.+|.+||..++.- ...+.+-+..|+-+.|. ++.+. .++....
T Consensus 299 vtaeQnl~l~d~~~l~i----------------~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~-------lr~y~~~- 354 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTI----------------VKQIVGYNDEILDMKFLGPEESHLAVATNSPE-------LRLYTLP- 354 (775)
T ss_pred EEccceEEEEEccccEE----------------ehhhcCCchhheeeeecCCccceEEEEeCCCc-------eEEEecC-
Confidence 88888999997543321 01111222333333332 11110 0000000
Q ss_pred ccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEE
Q 001538 414 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 493 (1057)
Q Consensus 414 ~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~ 493 (1057)
+ .... -+.||...+.++ .....+-+|+||+.|.+||+|.+....-+.+..- ...+|+..|.+|+
T Consensus 355 --~-----~~c~-ii~GH~e~vlSL-~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a-------~~~gH~~svgava 418 (775)
T KOG0319|consen 355 --T-----SYCQ-IIPGHTEAVLSL-DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA-------QANGHTNSVGAVA 418 (775)
T ss_pred --C-----CceE-EEeCchhheeee-eecccCcEEEEecCCceEEEEEecCCcchhhhhh-------hhcccccccceee
Confidence 0 0011 156777777666 3456678999999999999998733321111110 1138999999999
Q ss_pred EecCCC-eEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEe
Q 001538 494 FCFINS-SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 572 (1057)
Q Consensus 494 fspd~~-~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~ 572 (1057)
++..+. .|++++.|+++++|++...+.... ..-+.+...-..|...|+|++++|+.+++|+|+
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~----------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAF----------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccc----------------cceehhhHHHHhhcccccceEecCCCceEEecc
Confidence 987665 689999999999999987332111 001122223456999999999999999999999
Q ss_pred CCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCc
Q 001538 573 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 652 (1057)
Q Consensus 573 ~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg 652 (1057)
.|.+.+||++.+..++..+ +||+..|.++.|+ +..++|++++.|++|+||..+++
T Consensus 483 qDktaKiW~le~~~l~~vL---sGH~RGvw~V~Fs----------------------~~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRLLGVL---SGHTRGVWCVSFS----------------------KNDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred cccceeeecccCceEEEEe---eCCccceEEEEec----------------------cccceeEeccCCceEEEEEeccc
Confidence 9999999999988877665 5799999999998 66789999999999999999999
Q ss_pred ceeecCccccCCcceeEEEEeec
Q 001538 653 NMISSSPWHLKKKVIAISMEVIE 675 (1057)
Q Consensus 653 ~~i~~~~i~p~~~~~~~~~~~~d 675 (1057)
.++.+. .-+...++...|++
T Consensus 538 SClkT~---eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 538 SCLKTF---EGHTSAVLRASFIR 557 (775)
T ss_pred eeeeee---cCccceeEeeeeee
Confidence 999876 22456777788775
No 5
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-33 Score=349.19 Aligned_cols=867 Identities=18% Similarity=0.126 Sum_probs=439.3
Q ss_pred ccccCCcEEEEcCCCeEEEEEcCCCC--CeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCC
Q 001538 2 CLCRDGRIKVIGGDGIEGLLISPSQL--PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS 79 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~~~~~~~~--~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~ 79 (1057)
|||.+|+|++||+.++|.+..++... ++..+.|............++.+.+|...... .....+.++++...+..
T Consensus 52 i~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 128 (993)
T KOG1983|consen 52 IGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT---GVFLKQEITSFVTDPPP 128 (993)
T ss_pred EEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc---eeecCCcceeccCCCCc
Confidence 78999999999999999999888766 45556666666677777888888888864433 33455778999999999
Q ss_pred cEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccC
Q 001538 80 HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 159 (1057)
Q Consensus 80 ~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~ 159 (1057)
.| +.| .++.+.++..+. .++. .+.+.+..... -.+.....+...+.+.+.+.+. +++-+.+.. .-+++..
T Consensus 129 ~~-~~g-~~~~~~~~~~~~--~~~~--~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~ 198 (993)
T KOG1983|consen 129 DW-LIG-ENGLVKVSDVLR--HQLS--DLKYAGTESSN--FVPYESLSPTLSIEGLVIDLDT-VLISLPDAY-LGLSLIE 198 (993)
T ss_pred ch-hcc-cCceeeEeeech--hhhc--cceeccccccc--cceeeeeccceeeecccccccc-ceeeccccc-ccccccc
Confidence 99 888 999666665443 2222 12211111000 0011112344555555554443 333333322 1222222
Q ss_pred CeEEEEecCCcccccCCccCCCCCCCCCc------ccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 160 AQIIFVGGGKDLQLKDGVVDSPSEGDSTF------LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
.+..+.+.+.. + +...+.. ++.......+.-.+....+. ++|.+++++|.||++.+||...+.
T Consensus 199 ~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 199 YESLQVLYYSP-------T---KILIGFNRGLVVIKDRASKYVQSAYLPNGQLES-RDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred cccceeeeecC-------C---CcceeeeeeeeeehhcccccchhhcccccccCc-cCCceEEEEEecCCEEeeecCCCc
Confidence 22222211100 0 0000000 00000000111111112224 779999999999999999999874
Q ss_pred ccC---------CCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCccccc
Q 001538 234 STK---------GQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 304 (1057)
Q Consensus 234 ~~~---------~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~ 304 (1057)
... ..+.+++..+... ......+....|.| .|+...+.......+...|.. .
T Consensus 268 ~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~s~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~-~ 328 (993)
T KOG1983|consen 268 LQIARNPVPLVSLVPYGPCKQINRI----LTELPRSGKPFWIC--------------QGGMPRGSYGDRHCVSVEHDG-T 328 (993)
T ss_pred eeecCccccccccCCCChhhhhccc----ccccccccCcEEEe--------------cCCCccceecccceeEeecCC-c
Confidence 210 0000011111110 00011112223333 233322111111111111100 0
Q ss_pred ccceeeeeeeecCCCcccEEEEeecCCC--CCCCCceEEEEE---cCCCeeEEeeccchhhhhcccCCCCCCCCcccccc
Q 001538 305 ENLRCVSRVDITLTGSFADMILLSSAGA--TVGNHKADLFVL---TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 379 (1057)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~d~~~~p~~~~--~g~~~~~~lv~l---~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~ 379 (1057)
+....+.. .+.++........ ....++...+.+ +...++.++. +++...++.
T Consensus 329 -----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~s~~~~~~ 385 (993)
T KOG1983|consen 329 -----QVKLDFTS--SVIGLVGVTSEDPMSNFDANPNLVVLLEEELVPPDLQTLG----------------IPSVSPPYL 385 (993)
T ss_pred -----eeEEEEEe--cccceeeeecccccCccccCccceeccccccChhhhhccC----------------CCcccchhc
Confidence 00000000 0111111111000 001111111111 2222222222 111222223
Q ss_pred cCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEE
Q 001538 380 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 459 (1057)
Q Consensus 380 l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVri 459 (1057)
..-|...|++..+...-.. ..|-....+......+. .....||..++.-.. ...+...+..+++.|+.+++
T Consensus 386 ~~~~~~~I~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~s~~~v~~~~~~----~~~~~~~~g~~~~~d~~~~~ 456 (993)
T KOG1983|consen 386 GSHHKSAITCLSLDGEVPT----MLYPSGLAAGNAQSVPP-VSALSWPIVGGRLLQ----SAPKLLEIGLTGHEDSTVSF 456 (993)
T ss_pred cccCcceeeccccCCCccc----cccccccccccccCCCc-hhccccceeeceecc----cCccceeecccccccceeeE
Confidence 3334455565554321111 01111011111100000 134455665543222 23445556778999999999
Q ss_pred EecCCCceeEEeecccceee-------eeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeee---c
Q 001538 460 WDATYPVFKLICALDAEVQG-------IEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVL---E 529 (1057)
Q Consensus 460 Wd~~~~~l~~l~~l~~~v~~-------i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~---~ 529 (1057)
|+.....+..++.++....- ...+.....+..+.+|+....+++++..+.+....+......+...++. .
T Consensus 457 ~~~~~~s~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ic~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (993)
T KOG1983|consen 457 LDAGGPSLRPLYKLDTRSAFLTDGSFDPYSDDPRLGVQKPALCKKSGQLAVGGTAGQILTLELTDSIVTGAVSFFCADLN 536 (993)
T ss_pred EeccccccchhhhhccccccccCCcCCcccccccccCCcchhcccccccccccccceeeeeeecccccccceeeeehhhh
Confidence 99887765555544432110 0001112245566777877888888888777776665432221111110 0
Q ss_pred ---------CCCce----EEeccCCcceeeEEEe------------------eCCCCeEEEEEcCCCCEEEEEeCCceEE
Q 001538 530 ---------TKSEV----HALPEGKISLCRAVFS------------------LVNSPVRALQFTSSGAKLAVGFECGRVA 578 (1057)
Q Consensus 530 ---------~~~~~----~~i~~~~g~~~~~~~~------------------~h~~~ItsLa~S~~g~~lA~G~~dG~V~ 578 (1057)
....+ ..+....+++|...+. ...+.+..+.++. -..+..++.++.+.
T Consensus 537 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~g~~~~~~l~~-~~~v~~~~~~~~~~ 615 (993)
T KOG1983|consen 537 QDVSVFKWKGHDRLSPRSNPLSLPDGFQPFVDVQDRPPAGVTQGTLASGWILVKEGTVSGIGLSD-IPSVNVCTLDPNLI 615 (993)
T ss_pred hccccccccCchhccccccccCCCCccccceEEEecCCcceeeeccccceeccccceeeeeeccc-cceeeeccCCccce
Confidence 00000 0011112222111111 1223333333333 34788888888888
Q ss_pred EEeCCCCeEEEEeecC---CCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCccee
Q 001538 579 VLDMNLLSVLFFTDDI---SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 655 (1057)
Q Consensus 579 vwDi~~~~~l~~~~~~---~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i 655 (1057)
+-+-++...+++.... +.-+.....+.+..+ .+..+++.....++++.-|.. +
T Consensus 616 ~~~~~~~~~~~n~~~~l~~~~r~~~~~~v~~~~~--------------~~~~~~~~~~~~~~~~~~~~~----------~ 671 (993)
T KOG1983|consen 616 LGDERGLSRVKNLKKSLRLSFRSIRPSRVSLTGS--------------EYGLDGVSSILPVEGTDRGEL----------I 671 (993)
T ss_pred eccCCCceeEeeccCchhhhhccCCCceEecccc--------------eeccCchhhhhhcchhhcccc----------c
Confidence 8888777777665431 001111112222211 111112222333333333222 1
Q ss_pred ecCccccCCcceeEEEEeecCCCCCCCcccccchhhhcccCCCCCCCCCCcccCCCccccccccccccCCCCCCCceEEE
Q 001538 656 SSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLL 735 (1057)
Q Consensus 656 ~~~~i~p~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 735 (1057)
... +.|...+. +.-..-|.. .+. .+-.. ..+....+.+.+...+.......++.+++.
T Consensus 672 ~~~-i~p~~~~~-~~~~~~~s~-------------~~~----~~~~~---~~~~~~~~~s~~~s~~~~~~~~~~~~~~~i 729 (993)
T KOG1983|consen 672 GFK-ILPVSRGR-FSAKAEDSL-------------VNI----TSSLY---SAITLASDSSISSSLQGISYALAIEVPTLI 729 (993)
T ss_pred cce-eccccccc-cccccccCC-------------Ccc----ccchh---hhcchhhccCccccccccccccccccceEE
Confidence 112 33333222 111111100 000 00000 001111111222123455666778999999
Q ss_pred EecCeeEEeeccccccccceeeeeeccCCcceeeeeeeeCCceeEEEEEEeeCcEEEecCCChhhcccccccceeeeccc
Q 001538 736 CCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFK 815 (1057)
Q Consensus 736 ~se~~ir~~s~~~~~~g~~k~~~K~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i~i~SlP~L~~~~~~~~~~~~~~~~~ 815 (1057)
|+|+++|+|+++++.++...-++.++++..+++..+.. +.++++|++.+|+|+++|||+|+++....++-++.|++.
T Consensus 730 ~~e~~~~v~~~~~q~~~~~~~~~~~~~~~~~~~~~i~~---~~~~l~~~~~~g~i~~~slp~Lre~~~~v~~lp~~~~~i 806 (993)
T KOG1983|consen 730 CGESAIRVFSVPAQQCKELQLIHEAPVVGISVLDGISK---PEPSLDLLDANGHISKHSLPSLREEQFKVLPLPLVKNII 806 (993)
T ss_pred ecCCccceecccccccccceeeccccceeeeeeecccC---ccceeeEeecCCCccceecchhhhhhccccCCcchhhhc
Confidence 99999999999998776666666666556666655432 278999999999999999999999998888888888887
Q ss_pred ccccccc-ccc-Ccc-EEEEcCceeEEEEeecCCCceeccC----CCcceeechhHHHHHhhcccCchhhhccccccCcc
Q 001538 816 ANMDKTI-SAD-NGQ-ITLANGSEVAFVNLLAGENEFSILE----SSPCLHDKVLEAAAAAAFNVSSNQKKKQTTAAGIL 888 (1057)
Q Consensus 816 ~~~~~~~-~~s-~G~-i~l~~~~e~~~~s~~~~~~~~~~~~----s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1057)
.++...- +++ .|+ +++....|+... +..++.++...+ +++..+.+.....+ ...| +++
T Consensus 807 ~~~~~~~~g~~~~~~~~~~~s~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~----~~~ 871 (993)
T KOG1983|consen 807 KNKLTAGNGFSVHKVGELAASAVERSKK-TLEQELQELTNLGDISVLGLPLLKLEIPYA----------PIRQ----SDI 871 (993)
T ss_pred ccchhccccccccchhheecchhhhhhc-cccccccccccccccccccccccchhhhhh----------hhhc----ccc
Confidence 5654332 467 776 666666888887 788888888888 77777777555433 1244 677
Q ss_pred cccccccccccccccCCCCCCCcCchhhhhcccCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccccch
Q 001538 889 GGIVKGFRGEKMIHTLDDSIDPKSSFSQLGGIFSRPPFPDLSPAATNNEEIELNIDDIEIDEPPSMMATSSHEVTNTKKE 968 (1057)
Q Consensus 889 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~ 968 (1057)
.|+ ++++... .+... ..||..++|.++.+....+..+..... ++
T Consensus 872 ~g~---l~~g~~~----------~~~~~---------------------i~~l~~e~~~~~~~~~~~~~~~~~~~~-~~- 915 (993)
T KOG1983|consen 872 KGV---LFFGTVG----------CDPYK---------------------ISELEGERISLATKYEVVPISSGDVSS-RS- 915 (993)
T ss_pred ccc---cccCcCC----------CChhh---------------------hcccccccccccccceeeccccccCCc-cc-
Confidence 554 4444211 11111 345666677777666555533332111 11
Q ss_pred hhhhhhhhcCCCCCCCCCCCCHHHHHHHhccCCChhH--HHHHHHHHHHHHHHHhhhhhHhHHHHhhchhhHHHHHHHHH
Q 001538 969 KLSERERLLGVPDDAKPRLRTREEIIAKYRKAEDASS--VAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV 1046 (1057)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~e~~~kl~~~~~~~~~~~~~a~~f~~~a~~~~ 1046 (1057)
. ..+.....+.+..+|+++.+.++ ++.+|+++|+||+|||+++++||++|+++|++||++|||++
T Consensus 916 ---~----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~ 982 (993)
T KOG1983|consen 916 ---S----------ARAILGPPDGEEPKYAQASGVSSGSAASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELT 982 (993)
T ss_pred ---c----------cccccCCCcccchhhcccccccccchhhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHH
Confidence 0 11233334445566888887655 99999999999999999999999999999999999999999
Q ss_pred HHhhccccccC
Q 001538 1047 KTMENRKWWKI 1057 (1057)
Q Consensus 1047 ~~~~~~k~~~~ 1057 (1057)
.+|+.||||||
T Consensus 983 ~~~~~kk~~~f 993 (993)
T KOG1983|consen 983 GKYKVKKWYDF 993 (993)
T ss_pred hhhhhhhhccC
Confidence 99999999997
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-33 Score=296.01 Aligned_cols=312 Identities=16% Similarity=0.239 Sum_probs=240.9
Q ss_pred CCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCe
Q 001538 123 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 202 (1057)
Q Consensus 123 ~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~V 202 (1057)
.+|..+|.|++|+| +|.+|++|+.|-++++||+.+....++..+ | ...|
T Consensus 112 ~GH~e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg---------H--------------------~~WV 160 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDTETPLFTCKG---------H--------------------KNWV 160 (480)
T ss_pred CCCCCcEEEEEecC--CCceEEecCCCceEEeeccCCCCcceeecC---------C--------------------ccEE
Confidence 56889999999999 699999999999999999999998888876 4 8899
Q ss_pred EEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEe
Q 001538 203 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVY 282 (1057)
Q Consensus 203 tsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~ 282 (1057)
.|++|+ |||.+||+|+.||+|++||..+|.... . .-..|+..|..++|-... -.+..++++
T Consensus 161 lcvaws-PDgk~iASG~~dg~I~lwdpktg~~~g----~----------~l~gH~K~It~Lawep~h---l~p~~r~la- 221 (480)
T KOG0271|consen 161 LCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQIG----R----------ALRGHKKWITALAWEPLH---LVPPCRRLA- 221 (480)
T ss_pred EEEEEC-CCcchhhccccCCeEEEecCCCCCccc----c----------cccCcccceeEEeecccc---cCCCcccee-
Confidence 999999 999999999999999999998885321 1 112356678888886421 111122222
Q ss_pred cCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhh
Q 001538 283 GGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 362 (1057)
Q Consensus 283 gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l 362 (1057)
..+.+|.+++||...
T Consensus 222 ------------------------------------------------------------s~skDg~vrIWd~~~----- 236 (480)
T KOG0271|consen 222 ------------------------------------------------------------SSSKDGSVRIWDTKL----- 236 (480)
T ss_pred ------------------------------------------------------------cccCCCCEEEEEccC-----
Confidence 234567777887321
Q ss_pred cccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccC
Q 001538 363 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCH 442 (1057)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~ 442 (1057)
......++.|..+|||+..- +
T Consensus 237 -----------~~~~~~lsgHT~~VTCvrwG----------------------G-------------------------- 257 (480)
T KOG0271|consen 237 -----------GTCVRTLSGHTASVTCVRWG----------------------G-------------------------- 257 (480)
T ss_pred -----------ceEEEEeccCccceEEEEEc----------------------C--------------------------
Confidence 12234566788889888651 1
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEe-----------cCCC------------
Q 001538 443 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC-----------FINS------------ 499 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fs-----------pd~~------------ 499 (1057)
..+|.+|+.|++||+|++..+.+ ... +.||..-|+.++++ |.++
T Consensus 258 --~gliySgS~DrtIkvw~a~dG~~--~r~---------lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 258 --EGLIYSGSQDRTIKVWRALDGKL--CRE---------LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred --CceEEecCCCceEEEEEccchhH--HHh---------hcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 02789999999999999988763 222 34677777777766 3333
Q ss_pred -------------eEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCC
Q 001538 500 -------------SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 566 (1057)
Q Consensus 500 -------------~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~ 566 (1057)
.|++|+.|+++.+|+-.... +|+....+|..-|+.+.||||++
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k------------------------kpi~rmtgHq~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK------------------------KPITRMTGHQALVNHVSFSPDGR 380 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccc------------------------cchhhhhchhhheeeEEECCCcc
Confidence 39999999999999864432 23456678999999999999999
Q ss_pred EEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEE
Q 001538 567 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISI 646 (1057)
Q Consensus 567 ~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v 646 (1057)
++|+|+-|..|++||-++|+.+-++ .||-.+|..++|+ .|+.+|++|++|.++++
T Consensus 381 ~IASaSFDkSVkLW~g~tGk~lasf---RGHv~~VYqvaws----------------------aDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGKFLASF---RGHVAAVYQVAWS----------------------ADSRLLVSGSKDSTLKV 435 (480)
T ss_pred EEEEeecccceeeeeCCCcchhhhh---hhccceeEEEEec----------------------cCccEEEEcCCCceEEE
Confidence 9999999999999999999988665 4699999999998 78999999999999999
Q ss_pred EeCCCcceeecCccccCCcceeEEEEe
Q 001538 647 VGGSSENMISSSPWHLKKKVIAISMEV 673 (1057)
Q Consensus 647 ~d~~tg~~i~~~~i~p~~~~~~~~~~~ 673 (1057)
||+.+.++..-. |-+..+++.+..
T Consensus 436 w~V~tkKl~~DL---pGh~DEVf~vDw 459 (480)
T KOG0271|consen 436 WDVRTKKLKQDL---PGHADEVFAVDW 459 (480)
T ss_pred EEeeeeeecccC---CCCCceEEEEEe
Confidence 999987775543 555667666653
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-29 Score=276.25 Aligned_cols=500 Identities=16% Similarity=0.148 Sum_probs=312.4
Q ss_pred cccCCcEEEEcCCCeEEEEEcCC---CCCeeEEEEEcCCcEEEEEeCC--CcEEEEECCCCceeeeecC-CCCEEEEEEe
Q 001538 3 LCRDGRIKVIGGDGIEGLLISPS---QLPYKNLEFLQNQGFLISITND--NEIQVWSLESRSLACCLKW-ESNITAFSVI 76 (1057)
Q Consensus 3 gt~dG~I~v~g~~~~e~~~~~~~---~~~v~~L~F~~~~~~Lvs~s~d--~~I~VWdl~s~~~l~tl~~-~~~Ita~~~s 76 (1057)
|...|.|+|||.-+.+.++...- ..||+.|+|..++.++++++.. +..+++-+++|.-+..+.. ...|.++.+-
T Consensus 77 GD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~K 156 (603)
T KOG0318|consen 77 GDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFK 156 (603)
T ss_pred cCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeecc
Confidence 34569999999988787775432 5689999999999999998854 3455555557777777754 4688999999
Q ss_pred cCCc-EEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEE
Q 001538 77 SGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 155 (1057)
Q Consensus 77 p~~~-~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lW 155 (1057)
|.-. ++++|++|+.|-++ +- .||+... ..+.|..-|.++.|+| +|+++++++.||.|.||
T Consensus 157 psRPfRi~T~sdDn~v~ff--eG-------PPFKFk~--------s~r~HskFV~~VRysP--DG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 157 PSRPFRIATGSDDNTVAFF--EG-------PPFKFKS--------SFREHSKFVNCVRYSP--DGSRFATAGSDGKIYIY 217 (603)
T ss_pred CCCceEEEeccCCCeEEEe--eC-------CCeeeee--------cccccccceeeEEECC--CCCeEEEecCCccEEEE
Confidence 8865 58899999955444 32 2565442 1244566799999999 69999999999999999
Q ss_pred EccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCcc
Q 001538 156 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAST 235 (1057)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~ 235 (1057)
|=++|+.+..++. ...+.+.|.++.|+ ||+.+|+|++.|.++++||+.+...
T Consensus 218 DGktge~vg~l~~--------------------------~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~sl- 269 (603)
T KOG0318|consen 218 DGKTGEKVGELED--------------------------SDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSL- 269 (603)
T ss_pred cCCCccEEEEecC--------------------------CCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccce-
Confidence 9999999887764 11238899999999 9999999999999999999987632
Q ss_pred CCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeee
Q 001538 236 KGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI 315 (1057)
Q Consensus 236 ~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l 315 (1057)
+..+.+...-....+-++ |.. ..|+...-+ ..+..+..+-.. .+ +.--
T Consensus 270 ----------v~t~~~~~~v~dqqvG~l-Wqk---------d~lItVSl~-----G~in~ln~~d~~---~~----~~i~ 317 (603)
T KOG0318|consen 270 ----------VSTWPMGSTVEDQQVGCL-WQK---------DHLITVSLS-----GTINYLNPSDPS---VL----KVIS 317 (603)
T ss_pred ----------EEEeecCCchhceEEEEE-EeC---------CeEEEEEcC-----cEEEEecccCCC---hh----heec
Confidence 122222221112223333 531 223222211 134444432111 00 1111
Q ss_pred cCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEec
Q 001538 316 TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLL 395 (1057)
Q Consensus 316 ~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~ 395 (1057)
.++.++..+.+.+... .++..+-+|.|.-||.....+ .+..-..|...|++++....
T Consensus 318 GHnK~ITaLtv~~d~~--------~i~SgsyDG~I~~W~~~~g~~---------------~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGK--------TIYSGSYDGHINSWDSGSGTS---------------DRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred ccccceeEEEEcCCCC--------EEEeeccCceEEEEecCCccc---------------cccccccccceEEEEeecCC
Confidence 2233455555555432 677778899999998432211 11111236666776665321
Q ss_pred cCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeeccc
Q 001538 396 PFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDA 475 (1057)
Q Consensus 396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~ 475 (1057)
+..+...|+.....-....... .....- -.|..|. .+ +...++.+++....++-+-+=|..
T Consensus 375 --~~~~t~g~Dd~l~~~~~~~~~~-t~~~~~-~lg~QP~--~l-av~~d~~~avv~~~~~iv~l~~~~------------ 435 (603)
T KOG0318|consen 375 --GELFTIGWDDTLRVISLKDNGY-TKSEVV-KLGSQPK--GL-AVLSDGGTAVVACISDIVLLQDQT------------ 435 (603)
T ss_pred --CcEEEEecCCeEEEEecccCcc-ccccee-ecCCCce--eE-EEcCCCCEEEEEecCcEEEEecCC------------
Confidence 1122233433211100000000 000000 0011111 11 233333333332222222222221
Q ss_pred ceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCC
Q 001538 476 EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP 555 (1057)
Q Consensus 476 ~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ 555 (1057)
.+..+.+ ....++++++|++.++|+|++||.|+||.+....... ..++..|.++
T Consensus 436 ~~~~~~~---~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e-----------------------e~~~~~h~a~ 489 (603)
T KOG0318|consen 436 KVSSIPI---GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE-----------------------EAKLLEHRAA 489 (603)
T ss_pred cceeecc---ccccceEEEcCCCCEEEEecccceEEEEEecCCcccc-----------------------eeeeecccCC
Confidence 1222222 2578899999999999999999999999998754321 1355679999
Q ss_pred eEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEE
Q 001538 556 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI 635 (1057)
Q Consensus 556 ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L 635 (1057)
|++++|||||.+||+|...+.|.+||+.+..+..+. .--|+..|.+|+|+ |+..++
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~--w~FHtakI~~~aWs----------------------P~n~~v 545 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR--WAFHTAKINCVAWS----------------------PNNKLV 545 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecce--eeeeeeeEEEEEeC----------------------CCceEE
Confidence 999999999999999999999999999888763211 11189999999999 889999
Q ss_pred EEEecCCeEEEEeCCCc-ceeecCccccCCcceeEEEEeecC
Q 001538 636 IVLFKDAKISIVGGSSE-NMISSSPWHLKKKVIAISMEVIEP 676 (1057)
Q Consensus 636 ~sgt~dg~i~v~d~~tg-~~i~~~~i~p~~~~~~~~~~~~d~ 676 (1057)
++|+-|-.|.||+++.- +-|..+ -.+...+-.+..+|.
T Consensus 546 ATGSlDt~Viiysv~kP~~~i~ik---nAH~~gVn~v~wlde 584 (603)
T KOG0318|consen 546 ATGSLDTNVIIYSVKKPAKHIIIK---NAHLGGVNSVAWLDE 584 (603)
T ss_pred EeccccceEEEEEccChhhheEec---cccccCceeEEEecC
Confidence 99999999999998642 222222 222223555666664
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-29 Score=276.35 Aligned_cols=433 Identities=15% Similarity=0.185 Sum_probs=299.9
Q ss_pred CccccCCcEEEEcCCCeEEEEEcC-CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec----CCCCEEEEEE
Q 001538 1 MCLCRDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK----WESNITAFSV 75 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e~~~~~~-~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~----~~~~Ita~~~ 75 (1057)
+.|+.|+.|.+|.++-...-.... +.-=|.+++|+|||.++++++.|+.|.++|-.+++.+..+. +.+.|.+++|
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW 243 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW 243 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence 357899999999877655444332 23359999999999999999999999999999999998885 4589999999
Q ss_pred ecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEE
Q 001538 76 ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 155 (1057)
Q Consensus 76 sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lW 155 (1057)
+||+..+++.+.|-+++||+.... .+. -.++. ...-...-+.+.|+- | +|++.+-+|+|.++
T Consensus 244 sPDs~~~~T~SaDkt~KIWdVs~~--slv---~t~~~---------~~~v~dqqvG~lWqk-d---~lItVSl~G~in~l 305 (603)
T KOG0318|consen 244 SPDSTQFLTVSADKTIKIWDVSTN--SLV---STWPM---------GSTVEDQQVGCLWQK-D---HLITVSLSGTINYL 305 (603)
T ss_pred CCCCceEEEecCCceEEEEEeecc--ceE---EEeec---------CCchhceEEEEEEeC-C---eEEEEEcCcEEEEe
Confidence 999999999999999999987653 343 11111 001112345566662 2 69999999999999
Q ss_pred EccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCcc
Q 001538 156 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAST 235 (1057)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~ 235 (1057)
+.....+.+++.+ | .+.|+++..+ |||.+|.+|+.||.|.-|+..++...
T Consensus 306 n~~d~~~~~~i~G---------H--------------------nK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 306 NPSDPSVLKVISG---------H--------------------NKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred cccCCChhheecc---------c--------------------ccceeEEEEc-CCCCEEEeeccCceEEEEecCCcccc
Confidence 9999998887776 4 8899999999 99999999999999999999887532
Q ss_pred CCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeee
Q 001538 236 KGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI 315 (1057)
Q Consensus 236 ~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l 315 (1057)
.- ....|...|..+. ..+.+.++..|-++ .+.+.++.-..+... ...++
T Consensus 356 ~~--------------~g~~h~nqI~~~~--------~~~~~~~~t~g~Dd-----~l~~~~~~~~~~t~~----~~~~l 404 (603)
T KOG0318|consen 356 RL--------------AGKGHTNQIKGMA--------ASESGELFTIGWDD-----TLRVISLKDNGYTKS----EVVKL 404 (603)
T ss_pred cc--------------ccccccceEEEEe--------ecCCCcEEEEecCC-----eEEEEecccCccccc----ceeec
Confidence 11 1222444555551 22345666666655 466665432211000 00111
Q ss_pred cCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEec
Q 001538 316 TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLL 395 (1057)
Q Consensus 316 ~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~ 395 (1057)
..+ -..+...++.. .+++.+. ..|.++. ... ....+
T Consensus 405 g~Q--P~~lav~~d~~--------~avv~~~-~~iv~l~---------~~~---------~~~~~--------------- 440 (603)
T KOG0318|consen 405 GSQ--PKGLAVLSDGG--------TAVVACI-SDIVLLQ---------DQT---------KVSSI--------------- 440 (603)
T ss_pred CCC--ceeEEEcCCCC--------EEEEEec-CcEEEEe---------cCC---------cceee---------------
Confidence 111 00111111110 1111122 2222211 000 00000
Q ss_pred cCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeeccc
Q 001538 396 PFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDA 475 (1057)
Q Consensus 396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~ 475 (1057)
+ + ....+..+++++++.++.|++||.|++|.+...++...
T Consensus 441 ~-------------------------------~----~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee----- 480 (603)
T KOG0318|consen 441 P-------------------------------I----GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE----- 480 (603)
T ss_pred c-------------------------------c----ccccceEEEcCCCCEEEEecccceEEEEEecCCcccce-----
Confidence 0 0 00001115788999999999999999999988763211
Q ss_pred ceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCC
Q 001538 476 EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP 555 (1057)
Q Consensus 476 ~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ 555 (1057)
..+-.|..+|++|+|+||+.+||+|...+.|.+|+......... ..--|.+.
T Consensus 481 ----~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~------------------------~w~FHtak 532 (603)
T KOG0318|consen 481 ----AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN------------------------RWAFHTAK 532 (603)
T ss_pred ----eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc------------------------eeeeeeee
Confidence 11226888999999999999999999999999999876543211 23349999
Q ss_pred eEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEE
Q 001538 556 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI 635 (1057)
Q Consensus 556 ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L 635 (1057)
|.||+|||+.++||+|+-|-.|.||++..|.-.-.+ ...|...|++|.|- |...|
T Consensus 533 I~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i--knAH~~gVn~v~wl-----------------------de~tv 587 (603)
T KOG0318|consen 533 INCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII--KNAHLGGVNSVAWL-----------------------DESTV 587 (603)
T ss_pred EEEEEeCCCceEEEeccccceEEEEEccChhhheEe--ccccccCceeEEEe-----------------------cCceE
Confidence 999999999999999999999999999887543222 23488889999996 45679
Q ss_pred EEEecCCeEEEEeC
Q 001538 636 IVLFKDAKISIVGG 649 (1057)
Q Consensus 636 ~sgt~dg~i~v~d~ 649 (1057)
++.+.|..|++|..
T Consensus 588 vSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 588 VSSGQDANIKVWNV 601 (603)
T ss_pred EeccCcceeEEecc
Confidence 99999999999975
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-29 Score=287.49 Aligned_cols=488 Identities=15% Similarity=0.198 Sum_probs=330.3
Q ss_pred EcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCce--------eeeec-CCCCEEEEEEecCCcEEEEEccCCcEE
Q 001538 22 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL--------ACCLK-WESNITAFSVISGSHFMYIGDENGLMS 92 (1057)
Q Consensus 22 ~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~--------l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~ 92 (1057)
.+.-+.+|-++.|+||| .+++++..+.++||..-.... ..++. +-..|+++.|+-|++++++|+.|-.++
T Consensus 92 ~f~fk~~v~~i~fSPng-~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r 170 (893)
T KOG0291|consen 92 RFNFKRGVGAIKFSPNG-KFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR 170 (893)
T ss_pred EEeecCccceEEECCCC-cEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEE
Confidence 34457789999999999 566777899999998643221 12222 236899999999999999999999999
Q ss_pred EEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCccc
Q 001538 93 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 172 (1057)
Q Consensus 93 v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~ 172 (1057)
||..+..++ +. +|.. .+|..+|++.-|.. +...+.+.+.||.+.+|-....-....-.-++.+
T Consensus 171 l~~v~~~k~-~~--~~~l------------~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~e 233 (893)
T KOG0291|consen 171 LFGVDGNKN-LF--TYAL------------NGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEE 233 (893)
T ss_pred EEEeccccc-cc--eEec------------cCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCccccccccccc
Confidence 988876543 22 2222 34677899999988 4556999999999999987633111100000000
Q ss_pred ccCCc-cCCCCCCCCC-------cccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCC
Q 001538 173 LKDGV-VDSPSEGDST-------FLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRN 244 (1057)
Q Consensus 173 ~~~~~-~~~p~~~~~~-------~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~ 244 (1057)
-.... ++.+...... .++.+ .....+|+++.|| +.-..||+|...|.+.++.+++..
T Consensus 234 g~~d~~~~~~~Eek~~~~~~~k~~k~~l---n~~~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~----------- 298 (893)
T KOG0291|consen 234 GSDDEEMDEDGEEKTHKIFWYKTKKHYL---NQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFN----------- 298 (893)
T ss_pred ccccccccccchhhhcceEEEEEEeeee---cccccceeeeecc-CCceEEEEEecCCeeEEEecCCce-----------
Confidence 00000 0000000000 00000 0113789999999 999999999999999999998753
Q ss_pred cceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEE
Q 001538 245 NVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADM 324 (1057)
Q Consensus 245 ~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~ 324 (1057)
-|..+ +. ...+|..+.|.+ .|..++.|+.. ...++.++|+++...++++++. ..+..+
T Consensus 299 lih~L--Si--s~~~I~t~~~N~--------tGDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~-----~~i~~l 356 (893)
T KOG0291|consen 299 LIHSL--SI--SDQKILTVSFNS--------TGDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHS-----DRITSL 356 (893)
T ss_pred EEEEe--ec--ccceeeEEEecc--------cCCEEEEcCCc-----cceEEEEEeeccceeeeccccc-----cceeeE
Confidence 12221 22 235677777754 34456666554 3455666688877766655442 234445
Q ss_pred EEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccC------C
Q 001538 325 ILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPF------G 398 (1057)
Q Consensus 325 ~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~------~ 398 (1057)
...|++. .++..+++|.+.+||..+..|... ...|.+.||.+.|...+. -
T Consensus 357 ~YSpDgq--------~iaTG~eDgKVKvWn~~SgfC~vT----------------FteHts~Vt~v~f~~~g~~llssSL 412 (893)
T KOG0291|consen 357 AYSPDGQ--------LIATGAEDGKVKVWNTQSGFCFVT----------------FTEHTSGVTAVQFTARGNVLLSSSL 412 (893)
T ss_pred EECCCCc--------EEEeccCCCcEEEEeccCceEEEE----------------eccCCCceEEEEEEecCCEEEEeec
Confidence 5445443 566668999999999666555543 334778888888754432 1
Q ss_pred CCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCc-EEEEecCCCceeEEeecccce
Q 001538 399 GHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEV 477 (1057)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGt-VriWd~~~~~l~~l~~l~~~v 477 (1057)
++++++|+-. .++.+. .++...+...+..+..+.+.+++.|..|-- |.+|++.+|.+ +.+
T Consensus 413 DGtVRAwDlk------RYrNfR------Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql--lDi----- 473 (893)
T KOG0291|consen 413 DGTVRAWDLK------RYRNFR------TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL--LDI----- 473 (893)
T ss_pred CCeEEeeeec------ccceee------eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee--eeh-----
Confidence 2345566421 111111 134444444334467888999999999986 99999999973 333
Q ss_pred eeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeE
Q 001538 478 QGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR 557 (1057)
Q Consensus 478 ~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~It 557 (1057)
++||.+||.+++|+|++..||+|+.|.+|++|++-....... .+ .+...++
T Consensus 474 ----LsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE------------------------tl-~i~sdvl 524 (893)
T KOG0291|consen 474 ----LSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE------------------------TL-EIRSDVL 524 (893)
T ss_pred ----hcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee------------------------eE-eecccee
Confidence 349999999999999999999999999999999854322111 11 3567899
Q ss_pred EEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCC-----------------CCCCCeEEEEEeeccCcccccCCCC
Q 001538 558 ALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-----------------GSSSPIISMTWTEFKNTHSLAKNPN 620 (1057)
Q Consensus 558 sLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~-----------------g~~~~V~sl~f~~~~~~~~~~~~~~ 620 (1057)
+++|+|+|+-||+++.||.|.+||++....+.++.... ....+.++|+|+
T Consensus 525 ~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS------------- 591 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS------------- 591 (893)
T ss_pred EEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEc-------------
Confidence 99999999999999999999999998877765544321 123567888887
Q ss_pred CCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 621 HSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 621 ~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
+||.++++|+....|++||+.++-++...
T Consensus 592 ---------aDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 592 ---------ADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ---------CCCCEEEecCCcccEEEEECchhheeeeE
Confidence 99999999999999999999999887655
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.9e-28 Score=274.11 Aligned_cols=495 Identities=14% Similarity=0.143 Sum_probs=313.2
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
..+.+|++++-++|.-.|+.+-.||.|+||++.++..+.++. +...||++.++..|..+++|+.||.|-||++=.+.|.
T Consensus 63 ~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl 142 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL 142 (888)
T ss_pred cccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee
Confidence 345689999999999777888899999999999998888886 4579999999999999999999999888886444443
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
|++. +|...|+...|.- ..+.|++.+-|+.|++||+.+..+..+.-. |
T Consensus 143 -----~rL~------------GHkd~iT~~~F~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd---------~---- 190 (888)
T KOG0306|consen 143 -----FRLR------------GHKDSITQALFLN--GDSFLVSVSKDSMIKFWDLETQHCFETHVD---------H---- 190 (888)
T ss_pred -----EEee------------cchHHHhHHhccC--CCeEEEEeccCceEEEEecccceeeeEEec---------c----
Confidence 3322 3445677777775 345688889999999999999988765433 2
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCcc-----------------------CCCC
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAST-----------------------KGQQ 239 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~-----------------------~~~~ 239 (1057)
...|++++++ + ..++++..|+.+++|++....-. ++..
T Consensus 191 ----------------r~Eiw~l~~~-~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~ 251 (888)
T KOG0306|consen 191 ----------------RGEIWALVLD-E--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV 251 (888)
T ss_pred ----------------cceEEEEEEe-c--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence 7899999999 4 78999999999999999321100 0000
Q ss_pred CCCCCcc------------eee---------------------------------------ecccccCCccEEEEEeecc
Q 001538 240 TGSRNNV------------VKL---------------------------------------ELSSAERRLPVIVLHWSTN 268 (1057)
Q Consensus 240 ~~~~~~i------------~kl---------------------------------------~l~~~~~~~pI~~l~w~~~ 268 (1057)
......+ .++ .+..-.....|..+.|..+
T Consensus 252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~ 331 (888)
T KOG0306|consen 252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS 331 (888)
T ss_pred ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence 0000000 000 0000001123455566553
Q ss_pred CcCCCCCCceEEEecCCCCCCcceEEEEEcCccccccccee--eeeeeec-CCCcccEEEEeecCCCCCCCCceEEEEEc
Q 001538 269 KESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRC--VSRVDIT-LTGSFADMILLSSAGATVGNHKADLFVLT 345 (1057)
Q Consensus 269 ~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~--~~~~~l~-~~~~~~d~~~~p~~~~~g~~~~~~lv~l~ 345 (1057)
. ..+ ..+++-.+ +.+.++.++.+... .+.+ ...+.+. +...+..+.+..+. .+++..
T Consensus 332 ~---~~~--~~lv~l~n-----Ntv~~ysl~~s~~~-~p~~~~~~~i~~~GHR~dVRsl~vS~d~---------~~~~Sg 391 (888)
T KOG0306|consen 332 G---GTE--NTLVLLAN-----NTVEWYSLENSGKT-SPEADRTSNIEIGGHRSDVRSLCVSSDS---------ILLASG 391 (888)
T ss_pred C---Ccc--eeEEEeec-----CceEEEEeccCCCC-CccccccceeeeccchhheeEEEeecCc---------eeeeec
Confidence 2 111 22222111 23444444432111 0221 1122221 12234444433221 345556
Q ss_pred CCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCch--hhhHHHHhhccccCCCCCCCC
Q 001538 346 SPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSS--KGLSEIATFTKLHSSHTQAGH 423 (1057)
Q Consensus 346 ~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~ 423 (1057)
.++.+.+|+.....+....+ ...+.++.|.+..+...+. ..-+++.+.... ..+ .
T Consensus 392 a~~SikiWn~~t~kciRTi~------------------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--~l~---E 448 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTIT------------------CGYILASKFVPGDRYIVLGTKNGELQVFDLASA--SLV---E 448 (888)
T ss_pred CCCcEEEEEccCcceeEEec------------------cccEEEEEecCCCceEEEeccCCceEEEEeehh--hhh---h
Confidence 67899999965544433221 1234455554332110000 000000000000 000 0
Q ss_pred CcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCC-----ceeEEeecccceeeeeecCCCCCEEEEEEecCC
Q 001538 424 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP-----VFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN 498 (1057)
Q Consensus 424 ~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~-----~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~ 498 (1057)
+.-.+.|..|.. +..+++.-++||+.|.+|+|||..-- .......++ +-..+++. ..|.|+++|||+
T Consensus 449 ti~AHdgaIWsi----~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~-~~rtLel~---ddvL~v~~Spdg 520 (888)
T KOG0306|consen 449 TIRAHDGAIWSI----SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK-HTRTLELE---DDVLCVSVSPDG 520 (888)
T ss_pred hhhccccceeee----eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec-cceEEecc---ccEEEEEEcCCC
Confidence 000134444443 47889999999999999999996421 100001111 11123333 379999999999
Q ss_pred CeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEE
Q 001538 499 SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 578 (1057)
Q Consensus 499 ~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~ 578 (1057)
++||++--|.+|+||-+.+-+.+ ..+-+|.-||.||.+|||++++++|+.|.+|+
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFf-------------------------lsLYGHkLPV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFF-------------------------LSLYGHKLPVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred cEEEEEeccCeEEEEEecceeee-------------------------eeecccccceeEEeccCCcCeEEeccCCCceE
Confidence 99999999999999988765542 35668999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 579 VLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 579 vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
||-+.-|.|...+.. |...|.++.|- |....++++++|+.|+-||.+..++|...
T Consensus 576 iWGLdFGDCHKS~fA---HdDSvm~V~F~----------------------P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 576 IWGLDFGDCHKSFFA---HDDSVMSVQFL----------------------PKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred Eeccccchhhhhhhc---ccCceeEEEEc----------------------ccceeEEEecCcceEEeechhhhhhheee
Confidence 999999988776654 99999999998 77889999999999999999887776643
Q ss_pred ccccCCcceeEEEEe
Q 001538 659 PWHLKKKVIAISMEV 673 (1057)
Q Consensus 659 ~i~p~~~~~~~~~~~ 673 (1057)
+-+.+.+.++..
T Consensus 631 ---~~H~~ev~cLav 642 (888)
T KOG0306|consen 631 ---DGHHSEVWCLAV 642 (888)
T ss_pred ---ccchheeeeeEE
Confidence 444555555553
No 11
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.97 E-value=5.3e-30 Score=292.20 Aligned_cols=326 Identities=18% Similarity=0.206 Sum_probs=196.7
Q ss_pred CCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcc-cee---------e--eecCCCceEEecc------CCcceeeEE
Q 001538 487 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK-NFL---------F--VLETKSEVHALPE------GKISLCRAV 548 (1057)
Q Consensus 487 ~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~-~~~---------~--~~~~~~~~~~i~~------~~g~~~~~~ 548 (1057)
..|++|+|++++.+|++|..+|.|.||+|..++..+ ... . ..+.++.+.+|.. ++||+|...
T Consensus 2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred ceEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 379999999999999999999999999999886654 110 0 1134677888863 579999999
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCC-----CCCCCeEEEEEeeccCcccccCCCCCCC
Q 001538 549 FSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-----GSSSPIISMTWTEFKNTHSLAKNPNHSE 623 (1057)
Q Consensus 549 ~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~-----g~~~~V~sl~f~~~~~~~~~~~~~~~~~ 623 (1057)
+....++|++|+.|..| |+|+||++|.|.|+|+|+++++|+.+..+ ..+..|++++|..+.+.
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~----------- 149 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG----------- 149 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T-----------
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC-----------
Confidence 99999999999999888 99999999999999999999999976643 24568999999987654
Q ss_pred CcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecCccccCCcceeEEEEeecCCCCCCCcccccchhhhcccCCCCCCCC
Q 001538 624 REVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDT 703 (1057)
Q Consensus 624 ~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~i~p~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1057)
.|+|.+.+|++||+.|.+.+|. +.|...++ +...+.+.... ...+.- ..+|++
T Consensus 150 ---~D~ySSi~L~vGTn~G~v~~fk-----------Ilp~~~g~-f~v~~~~~~~~-~~~~i~-----------~I~~i~ 202 (395)
T PF08596_consen 150 ---GDGYSSICLLVGTNSGNVLTFK-----------ILPSSNGR-FSVQFAGATTN-HDSPIL-----------SIIPIN 202 (395)
T ss_dssp ---TSSSEEEEEEEEETTSEEEEEE-----------EEE-GGG--EEEEEEEEE---SS---------------EEEEEE
T ss_pred ---CCcccceEEEEEeCCCCEEEEE-----------EecCCCCc-eEEEEeecccc-CCCceE-----------EEEEEE
Confidence 6778899999999999999994 44433222 33333332200 000000 000121
Q ss_pred CCcccCCCccccccccccccCCCCCCCceEEEEecCeeEEeeccccccccceeeeeeccCC-cceee-eeeee--CCcee
Q 001538 704 SSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKN-RCCWA-STIEK--DEKVC 779 (1057)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~se~~ir~~s~~~~~~g~~k~~~K~~~~~-~~~~~-~~~~~--~~~~~ 779 (1057)
+..+....+... ..+.+.+|..+++++|+|++++||+|++++ .|..||.- .. .+|.+ .++.. ...++
T Consensus 203 ~~~G~~a~At~~---~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-----~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~ 273 (395)
T PF08596_consen 203 ADTGESALATIS---AMQGLSKGISIPGYVVVVSESDIRVFKPPK-----SKGAHKSF-DDPFLCSSASVVPTISRNGGY 273 (395)
T ss_dssp TTT--B-B-BHH---HHHGGGGT----EEEEEE-SSEEEEE-TT--------EEEEE--SS-EEEEEEEEEEEE-EEEEE
T ss_pred CCCCCcccCchh---HhhccccCCCcCcEEEEEcccceEEEeCCC-----Ccccceee-ccccccceEEEEeecccCCce
Confidence 222222222211 125788899999999999999999999996 58899975 43 33333 33321 24799
Q ss_pred EEEEEEeeCcEEEecCCChhhcccccccceeeeccccccccccccc-CccEEEEcC-ceeEEEEeecCCCc--eeccCCC
Q 001538 780 GLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFVNLLAGENE--FSILESS 855 (1057)
Q Consensus 780 ~l~~l~~~G~i~i~SlP~L~~~~~~~~~~~~~~~~~~~~~~~~~~s-~G~i~l~~~-~e~~~~s~~~~~~~--~~~~~s~ 855 (1057)
+|+||+.+|+|+++|||+|++|++.+++. ..+.+..+..+++ +||+++++| +|+++++++.+... .+...+.
T Consensus 274 ~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~----~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~~~~~~~~~~ 349 (395)
T PF08596_consen 274 CLVCLFNNGSIRIYSLPSLKEIKSVSLPP----PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGEGRTGSSLLAPPT 349 (395)
T ss_dssp EEEEEETTSEEEEEETTT--EEEEEE-SS-------HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES-------------
T ss_pred EEEEEECCCcEEEEECCCchHhhcccCCC----ccccccccccEECCCCCEEEEeCcccEEEEEEEccCCccccccCCCC
Confidence 99999999999999999999999999875 3444445555667 999999998 99999988886544 4566777
Q ss_pred cceeechhH
Q 001538 856 PCLHDKVLE 864 (1057)
Q Consensus 856 ~~l~~~~~~ 864 (1057)
..||.+.+.
T Consensus 350 d~L~np~~~ 358 (395)
T PF08596_consen 350 DTLYNPNLI 358 (395)
T ss_dssp -B---TT--
T ss_pred CeEECCCCC
Confidence 899998543
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=269.61 Aligned_cols=284 Identities=19% Similarity=0.191 Sum_probs=234.1
Q ss_pred CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEE
Q 001538 66 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 145 (1057)
Q Consensus 66 ~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli 145 (1057)
...+|+.+.++.+++.+++|+-+|.++||+.+.. .+. . .-.+|...|.++.|||.+++..+++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~---~------------~l~gH~~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLL---Q------------TLRGHTSRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc--cee---E------------EEeccccceeeEEEccCCCccceee
Confidence 3479999999999999999999999999986543 121 0 1245678899999999855666999
Q ss_pred EECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEE
Q 001538 146 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 225 (1057)
Q Consensus 146 ~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~ 225 (1057)
++.||+|+||++.+..++..+.+ | ...|..++|| |+|++|+|++-|.+-+
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~g---------H--------------------~~RVs~VafH-PsG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEG---------H--------------------LARVSRVAFH-PSGKFLGTASFDSTWR 286 (459)
T ss_pred eccCCceeeeccCCCcchhhhhc---------c--------------------hhhheeeeec-CCCceeeecccccchh
Confidence 99999999999998888887776 3 6789999999 9999999999999999
Q ss_pred EEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccc
Q 001538 226 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 305 (1057)
Q Consensus 226 lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~ 305 (1057)
+||+.++.-
T Consensus 287 lWD~~tk~E----------------------------------------------------------------------- 295 (459)
T KOG0272|consen 287 LWDLETKSE----------------------------------------------------------------------- 295 (459)
T ss_pred hcccccchh-----------------------------------------------------------------------
Confidence 999966410
Q ss_pred cceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCC
Q 001538 306 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 385 (1057)
Q Consensus 306 ~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 385 (1057)
+.+++| |..
T Consensus 296 --------------------------------------------------------lL~QEG---------------Hs~ 304 (459)
T KOG0272|consen 296 --------------------------------------------------------LLLQEG---------------HSK 304 (459)
T ss_pred --------------------------------------------------------hHhhcc---------------ccc
Confidence 000000 111
Q ss_pred cceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCC
Q 001538 386 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 465 (1057)
Q Consensus 386 ~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~ 465 (1057)
.|.++ +++++|.+++||+.|..-||||++++
T Consensus 305 ~v~~i-------------------------------------------------af~~DGSL~~tGGlD~~~RvWDlRtg 335 (459)
T KOG0272|consen 305 GVFSI-------------------------------------------------AFQPDGSLAATGGLDSLGRVWDLRTG 335 (459)
T ss_pred cccee-------------------------------------------------EecCCCceeeccCccchhheeecccC
Confidence 11111 35667778999999999999999998
Q ss_pred ceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCccee
Q 001538 466 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 545 (1057)
Q Consensus 466 ~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 545 (1057)
.. +. -++||..+|.+|+|+|+|..||+|+.|++++|||++..+.
T Consensus 336 r~--im---------~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~------------------------- 379 (459)
T KOG0272|consen 336 RC--IM---------FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE------------------------- 379 (459)
T ss_pred cE--EE---------EecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-------------------------
Confidence 72 22 2458888999999999999999999999999999986543
Q ss_pred eEEEeeCCCCeEEEEEcC-CCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCC
Q 001538 546 RAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 624 (1057)
Q Consensus 546 ~~~~~~h~~~ItsLa~S~-~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~ 624 (1057)
..++.+|..-|+.++|+| .|.+|++++.|++++||.-++..++..+. ||.+.|.|+.++
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa---GHe~kV~s~Dis----------------- 439 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA---GHEGKVISLDIS----------------- 439 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc---CCccceEEEEec-----------------
Confidence 125668999999999998 78899999999999999999999887664 599999999998
Q ss_pred cCCCCCCCcEEEEEecCCeEEEEe
Q 001538 625 EVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 625 ~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
||++++++++.|.++++|.
T Consensus 440 -----~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 -----PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -----cCCceEEEeccCceeeecc
Confidence 8999999999999999994
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.6e-29 Score=267.00 Aligned_cols=282 Identities=16% Similarity=0.175 Sum_probs=231.6
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC-CCCEEEEEEecC--CcEEEEEccCCcEEEEEEeCCC
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISG--SHFMYIGDENGLMSVIKYDADE 100 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~sp~--~~~l~vG~~~G~v~v~~~d~~~ 100 (1057)
....||....|+.++..|++++-+|.++||+..+...++++.. .+.|.++.|.|. ...|++++.||++++|.++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 3457899999999999999999999999999999999999975 489999999998 4589999999999999987643
Q ss_pred CceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCC
Q 001538 101 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 180 (1057)
Q Consensus 101 ~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (1057)
+. . ...+|...|..++||| +|++|++++-|.+-+|||+.++..+...++ |
T Consensus 253 --~l------~---------~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEG---------H-- 302 (459)
T KOG0272|consen 253 --PL------Q---------DLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEG---------H-- 302 (459)
T ss_pred --ch------h---------hhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcc---------c--
Confidence 11 0 1134567899999999 799999999999999999999987665555 3
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccE
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 260 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI 260 (1057)
...|.+++|+ |||..++||+.|..=++||+.+|.. |
T Consensus 303 ------------------s~~v~~iaf~-~DGSL~~tGGlD~~~RvWDlRtgr~-------------------------i 338 (459)
T KOG0272|consen 303 ------------------SKGVFSIAFQ-PDGSLAATGGLDSLGRVWDLRTGRC-------------------------I 338 (459)
T ss_pred ------------------ccccceeEec-CCCceeeccCccchhheeecccCcE-------------------------E
Confidence 8899999999 9999999999999999999977520 0
Q ss_pred EEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceE
Q 001538 261 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 340 (1057)
Q Consensus 261 ~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~ 340 (1057)
..+ .|
T Consensus 339 m~L------------------~g--------------------------------------------------------- 343 (459)
T KOG0272|consen 339 MFL------------------AG--------------------------------------------------------- 343 (459)
T ss_pred EEe------------------cc---------------------------------------------------------
Confidence 000 00
Q ss_pred EEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCC
Q 001538 341 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 420 (1057)
Q Consensus 341 lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (1057)
|..+|..+
T Consensus 344 ------------------------------------------H~k~I~~V------------------------------ 351 (459)
T KOG0272|consen 344 ------------------------------------------HIKEILSV------------------------------ 351 (459)
T ss_pred ------------------------------------------cccceeeE------------------------------
Confidence 10011111
Q ss_pred CCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEec-CCC
Q 001538 421 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INS 499 (1057)
Q Consensus 421 ~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fsp-d~~ 499 (1057)
+++|.|..|+||+.|+++||||+.... .++++ .+|..-|+.|.|+| .|.
T Consensus 352 -------------------~fsPNGy~lATgs~Dnt~kVWDLR~r~--~ly~i---------pAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 352 -------------------AFSPNGYHLATGSSDNTCKVWDLRMRS--ELYTI---------PAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred -------------------eECCCceEEeecCCCCcEEEeeecccc--cceec---------ccccchhhheEecccCCe
Confidence 255666789999999999999998765 24443 36788999999998 777
Q ss_pred eEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEE
Q 001538 500 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 579 (1057)
Q Consensus 500 ~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~v 579 (1057)
+|++++.|++++||.- .+++|...+.+|.+.|-++.+++||+++++++.|.++++
T Consensus 402 fL~TasyD~t~kiWs~-------------------------~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWST-------------------------RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred EEEEcccCcceeeecC-------------------------CCcccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 9999999999999974 345666788899999999999999999999999999999
Q ss_pred Ee
Q 001538 580 LD 581 (1057)
Q Consensus 580 wD 581 (1057)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=8.4e-26 Score=256.12 Aligned_cols=489 Identities=16% Similarity=0.222 Sum_probs=312.7
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeee---cCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl---~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
+.+..+.-..+.|+.++++.--.|.+||++++.+...+ .....+||+..+++...+++|.+||.|++|+...+...+
T Consensus 22 aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~ 101 (888)
T KOG0306|consen 22 ANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILI 101 (888)
T ss_pred cceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceee
Confidence 34444444444467888888999999999999654444 233589999999999999999999999999865442211
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
...+|..+|+.+.|.- .|.+|++|+-|+.|.+||+..-.-..++.+ |
T Consensus 102 -----------------tfngHK~AVt~l~fd~--~G~rlaSGskDt~IIvwDlV~E~Gl~rL~G---------H----- 148 (888)
T KOG0306|consen 102 -----------------TFNGHKAAVTTLKFDK--IGTRLASGSKDTDIIVWDLVGEEGLFRLRG---------H----- 148 (888)
T ss_pred -----------------eecccccceEEEEEcc--cCceEeecCCCccEEEEEeccceeeEEeec---------c-----
Confidence 1234677899999998 799999999999999999987766666665 3
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEE
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 263 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l 263 (1057)
...|+...|. .+.+++++.+.|+.|++||+.+...-. ....++.-|-.+
T Consensus 149 ---------------kd~iT~~~F~-~~~~~lvS~sKDs~iK~WdL~tqhCf~---------------Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 149 ---------------KDSITQALFL-NGDSFLVSVSKDSMIKFWDLETQHCFE---------------THVDHRGEIWAL 197 (888)
T ss_pred ---------------hHHHhHHhcc-CCCeEEEEeccCceEEEEecccceeee---------------EEecccceEEEE
Confidence 6789999999 778899999999999999998863110 001122222222
Q ss_pred EeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCccc--------------------------------ccccceee-
Q 001538 264 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS--------------------------------GMENLRCV- 310 (1057)
Q Consensus 264 ~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~--------------------------------~~~~~~~~- 310 (1057)
... . .++|+++.+ -.++||.+.... ..+-..|+
T Consensus 198 ~~~---------~-~~lvt~~~d----se~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g 263 (888)
T KOG0306|consen 198 VLD---------E-KLLVTAGTD----SELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG 263 (888)
T ss_pred EEe---------c-ceEEEEecC----CceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence 110 1 233333322 123444431100 00000000
Q ss_pred ---------------------------eeeee----------------------cCCCcccEEEEeecCCCCCCCCceEE
Q 001538 311 ---------------------------SRVDI----------------------TLTGSFADMILLSSAGATVGNHKADL 341 (1057)
Q Consensus 311 ---------------------------~~~~l----------------------~~~~~~~d~~~~p~~~~~g~~~~~~l 341 (1057)
++... .....+.++.++|.. +.+..+
T Consensus 264 ~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~-----~~~~~l 338 (888)
T KOG0306|consen 264 ADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSG-----GTENTL 338 (888)
T ss_pred chhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecC-----CcceeE
Confidence 00000 011123344444432 222334
Q ss_pred EEEcCCCeeEEeeccchhhhhcccCCCCCCC-CcccccccCCCCCcceEEEEEeccC-----CCCchhhhHHHHhhcccc
Q 001538 342 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVC-PVEFPGVIPISDPIMTVAEFMLLPF-----GGHSSKGLSEIATFTKLH 415 (1057)
Q Consensus 342 v~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~-~~~~~~~l~~~~~~it~~~~~~~~~-----~~~~~~~w~~~~~~~~~~ 415 (1057)
+. ..++.+.+|. +.. .+...+. .......+.+|+..|..+.++.++. ....++.|+. ...+
T Consensus 339 v~-l~nNtv~~ys-------l~~-s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~----~t~k 405 (888)
T KOG0306|consen 339 VL-LANNTVEWYS-------LEN-SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNR----DTLK 405 (888)
T ss_pred EE-eecCceEEEE-------ecc-CCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEc----cCcc
Confidence 44 5555788776 322 2222222 1223356778889898888866531 1123445532 1111
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEe
Q 001538 416 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 495 (1057)
Q Consensus 416 ~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fs 495 (1057)
+... ++-+ .... ..|-|..+.+++|..+|.+.++|+.+..+ +.. ...|.++|.+++.+
T Consensus 406 ciRT--------i~~~-y~l~--~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l--~Et---------i~AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 406 CIRT--------ITCG-YILA--SKFVPGDRYIVLGTKNGELQVFDLASASL--VET---------IRAHDGAIWSISLS 463 (888)
T ss_pred eeEE--------eccc-cEEE--EEecCCCceEEEeccCCceEEEEeehhhh--hhh---------hhccccceeeeeec
Confidence 1000 1212 1111 13778888999999999999999987662 111 22688899999999
Q ss_pred cCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCc
Q 001538 496 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 575 (1057)
Q Consensus 496 pd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG 575 (1057)
||++.+++|+.|.+|++|+|.-..... .+...+..+.+. .++ .....|.|+++||||++||+|=-|.
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~------gt~~k~lsl~~~------rtL-el~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVP------GTQKKVLSLKHT------RTL-ELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccC------cccceeeeeccc------eEE-eccccEEEEEEcCCCcEEEEEeccC
Confidence 999999999999999999985321100 011111111110 112 2467899999999999999999999
Q ss_pred eEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCccee
Q 001538 576 RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 655 (1057)
Q Consensus 576 ~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i 655 (1057)
+|+||-+.+.+-- -.++||.-||.|+..+ ||+.++++|+.|.+|++|-++=|.+-
T Consensus 531 TVkVyflDtlKFf---lsLYGHkLPV~smDIS----------------------~DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 531 TVKVYFLDTLKFF---LSLYGHKLPVLSMDIS----------------------PDSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred eEEEEEecceeee---eeecccccceeEEecc----------------------CCcCeEEeccCCCceEEeccccchhh
Confidence 9999999875432 2357899999999998 99999999999999999988888877
Q ss_pred ecCccccCCcceeEEEEee
Q 001538 656 SSSPWHLKKKVIAISMEVI 674 (1057)
Q Consensus 656 ~~~~i~p~~~~~~~~~~~~ 674 (1057)
.+. + .+...+.+++|+
T Consensus 586 KS~-f--AHdDSvm~V~F~ 601 (888)
T KOG0306|consen 586 KSF-F--AHDDSVMSVQFL 601 (888)
T ss_pred hhh-h--cccCceeEEEEc
Confidence 665 1 223444555554
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=8.6e-25 Score=250.94 Aligned_cols=482 Identities=14% Similarity=0.194 Sum_probs=282.2
Q ss_pred cccCCcEEEEcCCCe--EEEE----EcCCCCCeeEEEEEcCC--cEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEE
Q 001538 3 LCRDGRIKVIGGDGI--EGLL----ISPSQLPYKNLEFLQNQ--GFLISITNDNEIQVWSLESRSLACCLK-WESNITAF 73 (1057)
Q Consensus 3 gt~dG~I~v~g~~~~--e~~~----~~~~~~~v~~L~F~~~~--~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~ 73 (1057)
.+.++-|+||..... |..+ ......-|++|. .|.. .-++.++.+|.+++||+++++.+++++ +...||++
T Consensus 130 ~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~i 208 (910)
T KOG1539|consen 130 VDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAI 208 (910)
T ss_pred EEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEe
Confidence 456788888865431 2111 111111144442 3322 126788999999999999999999996 67999999
Q ss_pred EEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCe-EEEEECCCEE
Q 001538 74 SVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR-VLIAYENALV 152 (1057)
Q Consensus 74 ~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~-lli~~~dG~I 152 (1057)
+-+|..+.+++|+++|.|.++++..+..-+ .|+.+| ++|++++|.- ||+- ++++...|.+
T Consensus 209 eqsPaLDVVaiG~~~G~ViifNlK~dkil~---sFk~d~--------------g~VtslSFrt--DG~p~las~~~~G~m 269 (910)
T KOG1539|consen 209 EQSPALDVVAIGLENGTVIIFNLKFDKILM---SFKQDW--------------GRVTSLSFRT--DGNPLLASGRSNGDM 269 (910)
T ss_pred ccCCcceEEEEeccCceEEEEEcccCcEEE---EEEccc--------------cceeEEEecc--CCCeeEEeccCCceE
Confidence 999999999999999998888876654322 366553 5799999997 4554 5556667999
Q ss_pred EEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 153 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 153 ~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
.+|||...+++..... +| .+.|+.+.|- |....++|.+.|+++++|=..++
T Consensus 270 ~~wDLe~kkl~~v~~n--------ah--------------------~~sv~~~~fl-~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRN--------AH--------------------YGSVTGATFL-PGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EEEEcCCCeeeeeeec--------cc--------------------cCCcccceec-CCCceEeeccCCCceeEEEeeCC
Confidence 9999999988877654 12 6788889998 88899999999999999966554
Q ss_pred CccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCccc---cc---cc
Q 001538 233 ASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS---GM---EN 306 (1057)
Q Consensus 233 ~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~---~~---~~ 306 (1057)
+.. + .+++ .-..|..|-.++++-. ..+..+.+.+.| ..++..++.-.. +. -+
T Consensus 321 dg~------p--R~LR---~R~GHs~Pp~~irfy~-------~~g~~ilsa~~D----rt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 321 DGV------P--RLLR---SRGGHSAPPSCIRFYG-------SQGHFILSAKQD----RTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred CCc------c--hhee---eccCCCCCchheeeec-------cCcEEEEecccC----cchhhhhhhHHHHhHhhccccc
Confidence 321 0 1111 1112333433443321 123333333333 011111100000 00 00
Q ss_pred ceeeeeeeec----C-CCcccEEEEeec-CCC-C----CCCCceE--EEEEcCC--CeeEEeeccchhhhhcccCCCCCC
Q 001538 307 LRCVSRVDIT----L-TGSFADMILLSS-AGA-T----VGNHKAD--LFVLTSP--GQLHFYDNASLTTLLSQQEKKPSV 371 (1057)
Q Consensus 307 ~~~~~~~~l~----~-~~~~~d~~~~p~-~~~-~----g~~~~~~--lv~l~~~--G~l~~~D~~~~~~~l~~~~~~~~~ 371 (1057)
.++.++..+. . -.++..|..-.. ... . ...+... .+-..+. |+-.+ + +.
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~----------~~----- 442 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-D----------PK----- 442 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-c----------Cc-----
Confidence 0000000000 0 001111110000 000 0 0000111 1111111 22111 1 00
Q ss_pred CCcccccccCCCCCcceEEEEEeccCCCC---chhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEE
Q 001538 372 CPVEFPGVIPISDPIMTVAEFMLLPFGGH---SSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVY 448 (1057)
Q Consensus 372 ~~~~~~~~l~~~~~~it~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~l 448 (1057)
++.. ..-.+++++.+..+ .-. ..+.|...+..+..-.+.- .+. .-.+.+.+.++ +....++.+
T Consensus 443 ---~~~~----~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s-f~~-~~ah~~~V~gl----a~D~~n~~~ 508 (910)
T KOG1539|consen 443 ---RFKK----DDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS-FGD-SPAHKGEVTGL----AVDGTNRLL 508 (910)
T ss_pred ---cccc----cCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc-ccc-CccccCceeEE----EecCCCceE
Confidence 0000 11122222222111 000 0011111111100000000 000 00022222222 355667889
Q ss_pred EEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeee
Q 001538 449 LAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVL 528 (1057)
Q Consensus 449 iTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~ 528 (1057)
+|++.+|-+++||.....+ +..+ ++. .+++++.++..+..+|++..|-.|++||..+.+..
T Consensus 509 vsa~~~Gilkfw~f~~k~l--~~~l-------~l~---~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv------- 569 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVL--KKSL-------RLG---SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV------- 569 (910)
T ss_pred EEccCcceEEEEecCCcce--eeee-------ccC---CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh-------
Confidence 9999999999999988773 2222 222 47899999999999999999999999998765432
Q ss_pred cCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEee
Q 001538 529 ETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 608 (1057)
Q Consensus 529 ~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~ 608 (1057)
..|.+|...||+++|||||++|++++.|++|++||+-++.++-.+.. ..+.++|.|+
T Consensus 570 ------------------R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~S- 626 (910)
T KOG1539|consen 570 ------------------REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFS- 626 (910)
T ss_pred ------------------HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEEC-
Confidence 25678999999999999999999999999999999999998876654 7899999998
Q ss_pred ccCcccccCCCCCCCCcCCCCCCCcEEEEEecC-CeEEEEe
Q 001538 609 FKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD-AKISIVG 648 (1057)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~d-g~i~v~d 648 (1057)
|.+++|++...| .-|.+|.
T Consensus 627 ---------------------PngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 627 ---------------------PNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ---------------------CCCCEEEEEEecCceEEEEE
Confidence 889999999988 6788993
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2.9e-25 Score=240.65 Aligned_cols=337 Identities=15% Similarity=0.256 Sum_probs=240.0
Q ss_pred eecCCCCEEEEEEecCCc-EEEEEccCCcEEEEEEeCCCCcee-ccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCC
Q 001538 63 CLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLF-QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 140 (1057)
Q Consensus 63 tl~~~~~Ita~~~sp~~~-~l~vG~~~G~v~v~~~d~~~~~l~-~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g 140 (1057)
.+.++++|++.+|.|-.+ .+++|..+-..++|++-....... +..++-.. ...+-.......|++++|+. +|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~----~~~~~s~~~nkdVT~L~Wn~--~G 247 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCI----REGGKSVPSNKDVTSLDWNN--DG 247 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhh----hhhcccCCccCCcceEEecC--CC
Confidence 345678899999999888 888999998889998754222221 00011000 00112234467899999998 79
Q ss_pred CeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001538 141 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 220 (1057)
Q Consensus 141 ~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~ 220 (1057)
+.|++|+.||.++||+.. |.++.++.. | .++|.++.|+ .+|.+|++++.
T Consensus 248 ~~LatG~~~G~~riw~~~-G~l~~tl~~---------H--------------------kgPI~slKWn-k~G~yilS~~v 296 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNKD-GNLISTLGQ---------H--------------------KGPIFSLKWN-KKGTYILSGGV 296 (524)
T ss_pred CeEEEeecCcEEEEEecC-chhhhhhhc---------c--------------------CCceEEEEEc-CCCCEEEeccC
Confidence 999999999999999985 555555554 3 8899999999 99999999999
Q ss_pred CCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCc
Q 001538 221 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 300 (1057)
Q Consensus 221 DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~ 300 (1057)
||++.+||..++...++ ..++ ..|-..+.|...
T Consensus 297 D~ttilwd~~~g~~~q~-----------f~~~----s~~~lDVdW~~~-------------------------------- 329 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQ-----------FEFH----SAPALDVDWQSN-------------------------------- 329 (524)
T ss_pred CccEEEEeccCceEEEe-----------eeec----cCCccceEEecC--------------------------------
Confidence 99999999987642110 0111 111112233210
Q ss_pred ccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccc-cc
Q 001538 301 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP-GV 379 (1057)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~-~~ 379 (1057)
..++....+|.|++|- +.. ..| -+
T Consensus 330 --------------------------------------~~F~ts~td~~i~V~k-------v~~----------~~P~~t 354 (524)
T KOG0273|consen 330 --------------------------------------DEFATSSTDGCIHVCK-------VGE----------DRPVKT 354 (524)
T ss_pred --------------------------------------ceEeecCCCceEEEEE-------ecC----------CCccee
Confidence 0122233456666653 100 011 11
Q ss_pred cCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEE
Q 001538 380 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 459 (1057)
Q Consensus 380 l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVri 459 (1057)
+..|+.+|.++++ .+.+.+|+|++.|+|+||
T Consensus 355 ~~GH~g~V~alk~-------------------------------------------------n~tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 355 FIGHHGEVNALKW-------------------------------------------------NPTGSLLASCSDDGTLKI 385 (524)
T ss_pred eecccCceEEEEE-------------------------------------------------CCCCceEEEecCCCeeEe
Confidence 2235555544443 444568999999999999
Q ss_pred EecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC---------eEEEEecCccEEEEEecCCCCccceeeeecC
Q 001538 460 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS---------SLAVGNEFGLVYIYNLNGSLDAKNFLFVLET 530 (1057)
Q Consensus 460 Wd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~---------~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~ 530 (1057)
|....... .-++..|+..|..+.|+|.+. .|++++.|++|++||....
T Consensus 386 Ws~~~~~~-----------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------------ 442 (524)
T KOG0273|consen 386 WSMGQSNS-----------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------------ 442 (524)
T ss_pred eecCCCcc-----------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------------
Confidence 99765431 013446777888899998764 6899999999999998653
Q ss_pred CCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeecc
Q 001538 531 KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFK 610 (1057)
Q Consensus 531 ~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~ 610 (1057)
+|+..|..|..+|.+|+|||+|++||+|+.||.|.+|+++++++.+.... ...|-.|+|+
T Consensus 443 -------------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~----~~~Ifel~Wn--- 502 (524)
T KOG0273|consen 443 -------------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG----TGGIFELCWN--- 502 (524)
T ss_pred -------------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC----CCeEEEEEEc---
Confidence 34568889999999999999999999999999999999999998877653 6679999998
Q ss_pred CcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 611 NTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
.+|..|...-.|+.+++.|.
T Consensus 503 -------------------~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 503 -------------------AAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred -------------------CCCCEEEEEecCCCceEEEe
Confidence 66788999999999999985
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=3e-25 Score=227.82 Aligned_cols=288 Identities=13% Similarity=0.161 Sum_probs=229.1
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
+..-|.++.|++|.++||+++.||.+.|||..+..-.+.++.+ .-|-.++++|++++++.|.-|....|+.+...+..-
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g 133 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG 133 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence 4567999999999999999999999999999998888888765 679999999999999999999988888765431110
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
. ++ .......|.+-+.+..|-+ ++ +|++++.|.++.|||+++|+.+..|.+ |
T Consensus 134 ~-----~~------v~r~l~gHtgylScC~f~d--D~-~ilT~SGD~TCalWDie~g~~~~~f~G---------H----- 185 (343)
T KOG0286|consen 134 N-----VR------VSRELAGHTGYLSCCRFLD--DN-HILTGSGDMTCALWDIETGQQTQVFHG---------H----- 185 (343)
T ss_pred c-----ce------eeeeecCccceeEEEEEcC--CC-ceEecCCCceEEEEEcccceEEEEecC---------C-----
Confidence 0 00 0002245777899999987 45 599999999999999999999999987 4
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecC-CCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEE
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 262 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~p-dG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~ 262 (1057)
...|.++.++ | +++.+++|+-|++.++||+..+.. +..
T Consensus 186 ---------------~gDV~slsl~-p~~~ntFvSg~cD~~aklWD~R~~~c-------------------------~qt 224 (343)
T KOG0286|consen 186 ---------------TGDVMSLSLS-PSDGNTFVSGGCDKSAKLWDVRSGQC-------------------------VQT 224 (343)
T ss_pred ---------------cccEEEEecC-CCCCCeEEecccccceeeeeccCcce-------------------------eEe
Confidence 8899999999 7 999999999999999999965310 000
Q ss_pred EEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEE
Q 001538 263 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 342 (1057)
Q Consensus 263 l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv 342 (1057)
T Consensus 225 -------------------------------------------------------------------------------- 224 (343)
T KOG0286|consen 225 -------------------------------------------------------------------------------- 224 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCC
Q 001538 343 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 422 (1057)
Q Consensus 343 ~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (1057)
++.|++-|+.+.|
T Consensus 225 -------------------------------------F~ghesDINsv~f------------------------------ 237 (343)
T KOG0286|consen 225 -------------------------------------FEGHESDINSVRF------------------------------ 237 (343)
T ss_pred -------------------------------------ecccccccceEEE------------------------------
Confidence 0113333333333
Q ss_pred CCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEE
Q 001538 423 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 502 (1057)
Q Consensus 423 ~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~La 502 (1057)
.|++.-++||+.|++.|+||++......+|.-. ....+|++|+|+-.|++|.
T Consensus 238 -------------------fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~---------~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 238 -------------------FPSGDAFATGSDDATCRLYDLRADQELAVYSHD---------SIICGITSVAFSKSGRLLF 289 (343)
T ss_pred -------------------ccCCCeeeecCCCceeEEEeecCCcEEeeeccC---------cccCCceeEEEcccccEEE
Confidence 444456899999999999999987633333211 2345899999999999999
Q ss_pred EEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001538 503 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 581 (1057)
Q Consensus 503 vg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwD 581 (1057)
.|..|.++.+||.-+.+. +..+.+|...|+||..+|||.-|++|+.|.+|+||.
T Consensus 290 agy~d~~c~vWDtlk~e~-------------------------vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 290 AGYDDFTCNVWDTLKGER-------------------------VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeecCCceeEeeccccce-------------------------EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999765543 236779999999999999999999999999999994
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=3.6e-25 Score=226.23 Aligned_cols=298 Identities=18% Similarity=0.223 Sum_probs=226.7
Q ss_pred eeeec-CCCCEEEEEEecC-CcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCC
Q 001538 61 ACCLK-WESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 138 (1057)
Q Consensus 61 l~tl~-~~~~Ita~~~sp~-~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d 138 (1057)
..++. +.+.|++++..+. .+.++.++.|-.+-+|++..++.+ |-++. + .-.+|...|..+..+|
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-----~G~~~----r---~~~GHsH~v~dv~~s~-- 73 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-----YGVPV----R---RLTGHSHFVSDVVLSS-- 73 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-----cCcee----e---eeeccceEecceEEcc--
Confidence 34554 5588999998887 667888999999999998776432 21110 0 1134667899999999
Q ss_pred CCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEE
Q 001538 139 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 218 (1057)
Q Consensus 139 ~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg 218 (1057)
+|++.++++.|+++++||+.+++..+.|.+ | ...|.+++|+ ||.+.|++|
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~G---------H--------------------~~dVlsva~s-~dn~qivSG 123 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVG---------H--------------------TKDVLSVAFS-TDNRQIVSG 123 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEe---------c--------------------CCceEEEEec-CCCceeecC
Confidence 799999999999999999999999988887 4 8899999999 999999999
Q ss_pred EcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001538 219 YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSL 298 (1057)
Q Consensus 219 ~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l 298 (1057)
+.|.+|++|++-... + .++-+
T Consensus 124 SrDkTiklwnt~g~c--------------k--------------------------------------------~t~~~- 144 (315)
T KOG0279|consen 124 SRDKTIKLWNTLGVC--------------K--------------------------------------------YTIHE- 144 (315)
T ss_pred CCcceeeeeeecccE--------------E--------------------------------------------EEEec-
Confidence 999999999983320 0 00000
Q ss_pred CcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCccccc
Q 001538 299 EWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPG 378 (1057)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~ 378 (1057)
++
T Consensus 145 ------------------------------------------------~~------------------------------ 146 (315)
T KOG0279|consen 145 ------------------------------------------------DS------------------------------ 146 (315)
T ss_pred ------------------------------------------------CC------------------------------
Confidence 00
Q ss_pred ccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEE
Q 001538 379 VIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVR 458 (1057)
Q Consensus 379 ~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVr 458 (1057)
+..-|+|+.|++.. ...+|++++.|++||
T Consensus 147 ----~~~WVscvrfsP~~-----------------------------------------------~~p~Ivs~s~DktvK 175 (315)
T KOG0279|consen 147 ----HREWVSCVRFSPNE-----------------------------------------------SNPIIVSASWDKTVK 175 (315)
T ss_pred ----CcCcEEEEEEcCCC-----------------------------------------------CCcEEEEccCCceEE
Confidence 01124555553321 112689999999999
Q ss_pred EEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEec
Q 001538 459 IWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALP 538 (1057)
Q Consensus 459 iWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 538 (1057)
+||+...++.. ++.||+..|+.++++|||..+++|+.||.+.+||+...+..
T Consensus 176 vWnl~~~~l~~-----------~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l----------------- 227 (315)
T KOG0279|consen 176 VWNLRNCQLRT-----------TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL----------------- 227 (315)
T ss_pred EEccCCcchhh-----------ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee-----------------
Confidence 99998766322 23388999999999999999999999999999999765441
Q ss_pred cCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecC-CCC-----CCCeEEEEEeeccCc
Q 001538 539 EGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI-SGS-----SSPIISMTWTEFKNT 612 (1057)
Q Consensus 539 ~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~-~g~-----~~~V~sl~f~~~~~~ 612 (1057)
..-.|...|.+|+|+|+--+|+.+...+ |+|||+.+++++..+..- .|. ...-.+|+|+
T Consensus 228 ---------ysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws----- 292 (315)
T KOG0279|consen 228 ---------YSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS----- 292 (315)
T ss_pred ---------EeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEc-----
Confidence 2225788999999999987888888877 999999999998765431 111 1124577887
Q ss_pred ccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 613 HSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
+||+.|++|-.|+.|++|.+.
T Consensus 293 -----------------~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 293 -----------------ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -----------------CCCcEEEeeecCCcEEEEEee
Confidence 889999999999999999653
No 19
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=7.3e-24 Score=243.34 Aligned_cols=495 Identities=16% Similarity=0.172 Sum_probs=312.1
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCC-cee----eeecCCCC-EEEEE-EecCC
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLA----CCLKWESN-ITAFS-VISGS 79 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~-~~l----~tl~~~~~-Ita~~-~sp~~ 79 (1057)
..|.+|.+...+.-+..++.+.|..|.-.-+ +|++++.++.|.||+..++ ..+ ..++..+. ||++. .+...
T Consensus 95 ~~i~~~~rgk~i~~~~~~~~a~v~~l~~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYL 172 (910)
T KOG1539|consen 95 NKIYAYARGKHIRHTTLLHGAKVHLLLPFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYL 172 (910)
T ss_pred cEEEEEEccceEEEEeccccceEEEEeeecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhhe
Confidence 6788887775555555566677887765543 6999999999999999885 221 12233333 88865 33457
Q ss_pred cEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccC
Q 001538 80 HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 159 (1057)
Q Consensus 80 ~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~ 159 (1057)
+-+++|++.|.+.+|++.. +++. |.... ..+.|+++..+|. =..+++|..+|+|.|++++.
T Consensus 173 NKIvvGs~~G~lql~Nvrt--~K~v---~~f~~------------~~s~IT~ieqsPa--LDVVaiG~~~G~ViifNlK~ 233 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRT--GKVV---YTFQE------------FFSRITAIEQSPA--LDVVAIGLENGTVIIFNLKF 233 (910)
T ss_pred eeEEEeecCCcEEEEEecc--CcEE---EEecc------------cccceeEeccCCc--ceEEEEeccCceEEEEEccc
Confidence 7899999999999999766 4444 44331 2367999999995 34699999999999999999
Q ss_pred CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCC-EEEEEEcCCcEEEEeCCCCCccCCC
Q 001538 160 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTTASTKGQ 238 (1057)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~-~latg~~DG~I~lWd~~~~~~~~~~ 238 (1057)
++.+..|... .++|++++|. .||. .+|+|...|.+.|||++......
T Consensus 234 dkil~sFk~d-----------------------------~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~~-- 281 (910)
T KOG1539|consen 234 DKILMSFKQD-----------------------------WGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLIN-- 281 (910)
T ss_pred CcEEEEEEcc-----------------------------ccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeeee--
Confidence 9999999860 4899999999 9996 56778888999999997653110
Q ss_pred CCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCC
Q 001538 239 QTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT 318 (1057)
Q Consensus 239 ~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~ 318 (1057)
+.+ +. |...|....+.. +..++++.+.| +.+.+|.++ +....++.. |..-.+.
T Consensus 282 -------v~~-na----h~~sv~~~~fl~--------~epVl~ta~~D----nSlk~~vfD--~~dg~pR~L-R~R~GHs 334 (910)
T KOG1539|consen 282 -------VTR-NA----HYGSVTGATFLP--------GEPVLVTAGAD----NSLKVWVFD--SGDGVPRLL-RSRGGHS 334 (910)
T ss_pred -------eee-cc----ccCCcccceecC--------CCceEeeccCC----CceeEEEee--CCCCcchhe-eeccCCC
Confidence 000 00 111222222221 22355555555 467777765 211222211 1111122
Q ss_pred CcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCC--CCCCcccc--cccCCCCCcceEEEEEe
Q 001538 319 GSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKP--SVCPVEFP--GVIPISDPIMTVAEFML 394 (1057)
Q Consensus 319 ~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~--~~~~~~~~--~~l~~~~~~it~~~~~~ 394 (1057)
.|..-+.+.... ...++....++.+..|+.... .+++.-++. ...+...- .......|+|+..++.-
T Consensus 335 ~Pp~~irfy~~~-------g~~ilsa~~Drt~r~fs~~~e--~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 335 APPSCIRFYGSQ-------GHFILSAKQDRTLRSFSVISE--SQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred CCchheeeeccC-------cEEEEecccCcchhhhhhhHH--HHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 222222221111 123444456666666552111 011111110 00011111 01222346676666522
Q ss_pred ccCCCCchhhhHHHHhhccc-------------cCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEe
Q 001538 395 LPFGGHSSKGLSEIATFTKL-------------HSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWD 461 (1057)
Q Consensus 395 ~~~~~~~~~~w~~~~~~~~~-------------~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd 461 (1057)
. |. +.|..+...... .++.++.....=+....+ .++ ..+..|++.+-|+..|+|-+++
T Consensus 406 ~-RE----~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~---~av-~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 406 A-RE----KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA---TAV-CVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred c-hh----hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce---EEE-EEeccCceEEEeccCCeEEEEE
Confidence 1 11 335443222211 111110000000000101 111 4678899999999999999999
Q ss_pred cCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCC
Q 001538 462 ATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGK 541 (1057)
Q Consensus 462 ~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 541 (1057)
+.++-..--+. +-..|..+|+.|+.+.-++.+++++.+|.+.+|+|.+.....
T Consensus 477 mQSGi~r~sf~--------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~------------------- 529 (910)
T KOG1539|consen 477 MQSGIHRKSFG--------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK------------------- 529 (910)
T ss_pred cccCeeecccc--------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-------------------
Confidence 99886322211 112577899999999999999999999999999997653211
Q ss_pred cceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCC
Q 001538 542 ISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNH 621 (1057)
Q Consensus 542 g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~ 621 (1057)
.+ ....+++++.++.....+|++.+|=.|+|+|+.+.+++..+ .||+..|+.++|+
T Consensus 530 ------~l-~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~nritd~~FS-------------- 585 (910)
T KOG1539|consen 530 ------SL-RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHGNRITDMTFS-------------- 585 (910)
T ss_pred ------ee-ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccccceeeeEeC--------------
Confidence 11 13557888888888889999999999999999998887654 4699999999999
Q ss_pred CCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 622 SEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 622 ~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
|||++|++++.|++|++||+.||.+|--.
T Consensus 586 --------~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 586 --------PDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred --------CCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 99999999999999999999999988644
No 20
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=8.5e-24 Score=268.06 Aligned_cols=318 Identities=18% Similarity=0.239 Sum_probs=230.7
Q ss_pred CCcEEEEECCCCceeeeec------CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCC--CCceeccCcccchhhhhhh
Q 001538 47 DNEIQVWSLESRSLACCLK------WESNITAFSVISGSHFMYIGDENGLMSVIKYDAD--EGKLFQLPYNISADALSEK 118 (1057)
Q Consensus 47 d~~I~VWdl~s~~~l~tl~------~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~--~~~l~~~~~~i~~~~~~~~ 118 (1057)
+|-+++|+..+.+....+. +.+.|++++|+|+++++++|+.||.|+||+++.. .+... .+.+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~--~~~~~------- 527 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI--HYPVV------- 527 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc--ccceE-------
Confidence 5678889988766544432 3578999999999999999999999999986431 11100 01000
Q ss_pred cCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCC
Q 001538 119 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 198 (1057)
Q Consensus 119 ~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 198 (1057)
...+...|.+++|+|. .+++|++++.||+|+|||+.+++.+..+.+ |
T Consensus 528 ---~~~~~~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~~~~---------H-------------------- 574 (793)
T PLN00181 528 ---ELASRSKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTEMKE---------H-------------------- 574 (793)
T ss_pred ---EecccCceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEEecC---------C--------------------
Confidence 0112457999999986 477899999999999999999988877655 3
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCce
Q 001538 199 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR 278 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~ 278 (1057)
...|++++|+++++..|+||+.||+|++||+.++. .+..+
T Consensus 575 ~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-------------------------~~~~~--------------- 614 (793)
T PLN00181 575 EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-------------------------SIGTI--------------- 614 (793)
T ss_pred CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-------------------------EEEEE---------------
Confidence 77899999993488999999999999999995431 00000
Q ss_pred EEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccch
Q 001538 279 LFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASL 358 (1057)
Q Consensus 279 Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~ 358 (1057)
.
T Consensus 615 ------------------~------------------------------------------------------------- 615 (793)
T PLN00181 615 ------------------K------------------------------------------------------------- 615 (793)
T ss_pred ------------------e-------------------------------------------------------------
Confidence 0
Q ss_pred hhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCc
Q 001538 359 TTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPI 438 (1057)
Q Consensus 359 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~ 438 (1057)
+...++++.+.
T Consensus 616 ------------------------~~~~v~~v~~~--------------------------------------------- 626 (793)
T PLN00181 616 ------------------------TKANICCVQFP--------------------------------------------- 626 (793)
T ss_pred ------------------------cCCCeEEEEEe---------------------------------------------
Confidence 00001112110
Q ss_pred cccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 439 TKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 439 ~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
.+++..+++|+.||+|++||+..... .+. .+.+|...|+++.|. ++.+|++|+.||+|+||++...
T Consensus 627 ---~~~g~~latgs~dg~I~iwD~~~~~~-~~~---------~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 627 ---SESGRSLAFGSADHKVYYYDLRNPKL-PLC---------TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred ---CCCCCEEEEEeCCCeEEEEECCCCCc-cce---------EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 12234789999999999999976541 111 123688899999997 7889999999999999998653
Q ss_pred CCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeec-----
Q 001538 519 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD----- 593 (1057)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~----- 593 (1057)
... ....++..+.+|...+++++|++++++||+|+.||+|+|||...+..+.....
T Consensus 693 ~~~-------------------~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~ 753 (793)
T PLN00181 693 ISG-------------------INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP 753 (793)
T ss_pred ccc-------------------cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence 210 01123346778999999999999999999999999999999876654432211
Q ss_pred -----CCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 594 -----ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 594 -----~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
...+...|.+++|+ +++.+|++|+.||.|++||.
T Consensus 754 ~~~~~~~~~~~~V~~v~ws----------------------~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 754 VSGLEVDDASQFISSVCWR----------------------GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccccccCCCCcEEEEEEEc----------------------CCCCeEEEecCCCcEEEEec
Confidence 11245679999998 78999999999999999985
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.5e-23 Score=221.39 Aligned_cols=336 Identities=16% Similarity=0.240 Sum_probs=238.8
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
.+..+|-+++..|+..++++++.|+.-.||++.++..+..+. +...|+|+.|+.++.||++|+.+|.|.||......
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~-- 139 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG-- 139 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc--
Confidence 456789999999998889999999999999999999888775 45789999999999999999999999888865532
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
.. ..+. .....+.=+.|||+ +..|+.|+.||.+-.|.+.++...+.+.+ |
T Consensus 140 ~~---~~~~------------~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~G---------h---- 189 (399)
T KOG0296|consen 140 EQ---WKLD------------QEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSG---------H---- 189 (399)
T ss_pred eE---EEee------------cccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecC---------C----
Confidence 21 1111 11345777899995 77899999999999999999877777776 3
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEE
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 262 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~ 262 (1057)
..++++=+|. |||+.+++||.||+|++||..++. |+.++.-.-. ...|...
T Consensus 190 ----------------~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~-----------p~~~~~~~e~-~~~~~~~ 240 (399)
T KOG0296|consen 190 ----------------NSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQ-----------PLHKITQAEG-LELPCIS 240 (399)
T ss_pred ----------------CCCccccccc-CCCceEEEEecCceEEEEecCCCc-----------eeEEeccccc-CcCCccc
Confidence 7789999999 999999999999999999998873 3333211100 0111111
Q ss_pred EEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEE
Q 001538 263 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 342 (1057)
Q Consensus 263 l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv 342 (1057)
....+.+++.|..+. ...+
T Consensus 241 ----------~~~~~~~~~~g~~e~---------------------------------------------------~~~~ 259 (399)
T KOG0296|consen 241 ----------LNLAGSTLTKGNSEG---------------------------------------------------VACG 259 (399)
T ss_pred ----------cccccceeEeccCCc---------------------------------------------------cEEE
Confidence 122344444444330 0111
Q ss_pred EEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCC
Q 001538 343 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 422 (1057)
Q Consensus 343 ~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (1057)
+....|.+.... . ...|...+.++..+.++.+++
T Consensus 260 ~~~~sgKVv~~~-----------n-------~~~~~l~~~~e~~~esve~~~---------------------------- 293 (399)
T KOG0296|consen 260 VNNGSGKVVNCN-----------N-------GTVPELKPSQEELDESVESIP---------------------------- 293 (399)
T ss_pred EccccceEEEec-----------C-------CCCccccccchhhhhhhhhcc----------------------------
Confidence 111122332211 0 001111111222222222211
Q ss_pred CCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEE
Q 001538 423 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 502 (1057)
Q Consensus 423 ~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~La 502 (1057)
.+..=.+.++|+.||+|-|||.....++.++ .|..+|+.+.|-+ ..+|+
T Consensus 294 ------------------~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c------------~he~~V~~l~w~~-t~~l~ 342 (399)
T KOG0296|consen 294 ------------------SSSKLPLAACGSVDGTIAIYDLAASTLRHIC------------EHEDGVTKLKWLN-TDYLL 342 (399)
T ss_pred ------------------cccccchhhcccccceEEEEecccchhheec------------cCCCceEEEEEcC-cchhe
Confidence 1111236789999999999999887754433 3556899999998 88999
Q ss_pred EEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeC
Q 001538 503 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 582 (1057)
Q Consensus 503 vg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi 582 (1057)
+++.+|.|+.||.++... ...+.+|..+|.+++++|+.+++++++.|++.+|+++
T Consensus 343 t~c~~g~v~~wDaRtG~l-------------------------~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 343 TACANGKVRQWDARTGQL-------------------------KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eeccCceEEeeeccccce-------------------------EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999999999877543 3478899999999999999999999999999999986
Q ss_pred C
Q 001538 583 N 583 (1057)
Q Consensus 583 ~ 583 (1057)
.
T Consensus 398 ~ 398 (399)
T KOG0296|consen 398 P 398 (399)
T ss_pred C
Confidence 4
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=9.3e-24 Score=212.26 Aligned_cols=297 Identities=13% Similarity=0.149 Sum_probs=210.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeecC-CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhh
Q 001538 40 FLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 118 (1057)
Q Consensus 40 ~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~ 118 (1057)
+|++++.|.+|++|...+|.+..++++ ++.|..+++.|+.++|+++.- -.|+++++....-... +.|
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv-~t~---------- 79 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPV-ATF---------- 79 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCce-eEE----------
Confidence 799999999999999999999999986 589999999999999998754 3356655443221100 012
Q ss_pred cCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCC
Q 001538 119 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 198 (1057)
Q Consensus 119 ~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 198 (1057)
..+...|++|.|+- +|+.+.+|++||+++|||++.-.+-+.+..
T Consensus 80 ----e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR~~~~------------------------------ 123 (311)
T KOG0315|consen 80 ----EGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQRNYQH------------------------------ 123 (311)
T ss_pred ----eccCCceEEEEEee--cCeEEEecCCCceEEEEeccCcccchhccC------------------------------
Confidence 22456799999998 799999999999999999998444433332
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCce
Q 001538 199 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR 278 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~ 278 (1057)
..+|.+++.| |+...|++|..+|.|++||+..... ..++-+ +...+|.+
T Consensus 124 ~spVn~vvlh-pnQteLis~dqsg~irvWDl~~~~c-------------~~~liP-e~~~~i~s---------------- 172 (311)
T KOG0315|consen 124 NSPVNTVVLH-PNQTELISGDQSGNIRVWDLGENSC-------------THELIP-EDDTSIQS---------------- 172 (311)
T ss_pred CCCcceEEec-CCcceEEeecCCCcEEEEEccCCcc-------------ccccCC-CCCcceee----------------
Confidence 6789999999 9999999999999999999965310 000000 00011111
Q ss_pred EEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccch
Q 001538 279 LFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASL 358 (1057)
Q Consensus 279 Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~ 358 (1057)
++| .|++ ..+++..+.|..++|+
T Consensus 173 --------------l~v-------------------------------~~dg--------sml~a~nnkG~cyvW~---- 195 (311)
T KOG0315|consen 173 --------------LTV-------------------------------MPDG--------SMLAAANNKGNCYVWR---- 195 (311)
T ss_pred --------------EEE-------------------------------cCCC--------cEEEEecCCccEEEEE----
Confidence 111 1111 1344555667777776
Q ss_pred hhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCc
Q 001538 359 TTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPI 438 (1057)
Q Consensus 359 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~ 438 (1057)
+... . .
T Consensus 196 ---l~~~--------------------------------~-----------------~---------------------- 201 (311)
T KOG0315|consen 196 ---LLNH--------------------------------Q-----------------T---------------------- 201 (311)
T ss_pred ---ccCC--------------------------------C-----------------c----------------------
Confidence 2100 0 0
Q ss_pred cccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 439 TKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 439 ~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
...+.++.. +..|+.-+..+-||||+++||+++.|.+|+||+.+.-
T Consensus 202 -------------------------~s~l~P~~k---------~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 202 -------------------------ASELEPVHK---------FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred -------------------------cccceEhhh---------eecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 000011111 1145567888999999999999999999999998654
Q ss_pred CCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCC
Q 001538 519 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 598 (1057)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~ 598 (1057)
.. -...+.+|...+...+||.||+||++|+.|+++++||+..++.+...+ ||-
T Consensus 248 -~k-----------------------le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~---gh~ 300 (311)
T KOG0315|consen 248 -FK-----------------------LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ---GHH 300 (311)
T ss_pred -ee-----------------------eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC---Ccc
Confidence 21 124677899999999999999999999999999999999998776654 477
Q ss_pred CCeEEEEEe
Q 001538 599 SPIISMTWT 607 (1057)
Q Consensus 599 ~~V~sl~f~ 607 (1057)
.+.++++..
T Consensus 301 K~~vc~~ln 309 (311)
T KOG0315|consen 301 KAAVCVALN 309 (311)
T ss_pred cccEEEEee
Confidence 776666643
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=1.1e-24 Score=250.42 Aligned_cols=261 Identities=22% Similarity=0.285 Sum_probs=199.9
Q ss_pred cCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccC--cccchh----------hhh-hhcCC---CCCCCCC
Q 001538 65 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP--YNISAD----------ALS-EKAGF---PLLSHQP 128 (1057)
Q Consensus 65 ~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~--~~i~~~----------~~~-~~~g~---~~~~~~~ 128 (1057)
.....++|..|++++..|+.|..|-.|++|.+++.. |...+ -.+... ... ...+. ..+|.+|
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k--l~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK--LKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhh--hccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 355789999999999999999999999999998632 21101 000000 000 00111 2468999
Q ss_pred eEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEe
Q 001538 129 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 208 (1057)
Q Consensus 129 V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws 208 (1057)
|.+..|+| +.+.|+++++|++|+||++.+...+-...+ | ..+|+.+.|+
T Consensus 454 Vyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~y~G---------H--------------------~~PVwdV~F~ 502 (707)
T KOG0263|consen 454 VYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVIYKG---------H--------------------LAPVWDVQFA 502 (707)
T ss_pred eeeeeecc--cccceeeccCCcceeeeecccceeEEEecC---------C--------------------CcceeeEEec
Confidence 99999999 577899999999999999999887766555 3 7799999999
Q ss_pred cCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCC
Q 001538 209 SSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIG 288 (1057)
Q Consensus 209 ~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~ 288 (1057)
|.|-++||++.|++-++|...... | - ++++
T Consensus 503 -P~GyYFatas~D~tArLWs~d~~~-----------P--------------l-----------------Rifa------- 532 (707)
T KOG0263|consen 503 -PRGYYFATASHDQTARLWSTDHNK-----------P--------------L-----------------RIFA------- 532 (707)
T ss_pred -CCceEEEecCCCceeeeeecccCC-----------c--------------h-----------------hhhc-------
Confidence 999999999999999999873210 0 0 0000
Q ss_pred CcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCC
Q 001538 289 SEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKK 368 (1057)
Q Consensus 289 ~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~ 368 (1057)
T Consensus 533 -------------------------------------------------------------------------------- 532 (707)
T KOG0263|consen 533 -------------------------------------------------------------------------------- 532 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEE
Q 001538 369 PSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVY 448 (1057)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~l 448 (1057)
.|.+-|.|+ .|+|.++++
T Consensus 533 -------------ghlsDV~cv-------------------------------------------------~FHPNs~Y~ 550 (707)
T KOG0263|consen 533 -------------GHLSDVDCV-------------------------------------------------SFHPNSNYV 550 (707)
T ss_pred -------------ccccccceE-------------------------------------------------EECCccccc
Confidence 011112222 366777799
Q ss_pred EEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeee
Q 001538 449 LAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVL 528 (1057)
Q Consensus 449 iTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~ 528 (1057)
+||+.|.+||+||+.++....+ +.||..+|++|+|||+|++||+|++||.|.|||+...+..
T Consensus 551 aTGSsD~tVRlWDv~~G~~VRi-----------F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v------- 612 (707)
T KOG0263|consen 551 ATGSSDRTVRLWDVSTGNSVRI-----------FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV------- 612 (707)
T ss_pred ccCCCCceEEEEEcCCCcEEEE-----------ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch-------
Confidence 9999999999999999874333 2489999999999999999999999999999999775442
Q ss_pred cCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCe
Q 001538 529 ETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS 586 (1057)
Q Consensus 529 ~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~ 586 (1057)
..+.+|++.|++|.||.+|..||+|+.|.+|+|||+....
T Consensus 613 ------------------~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 613 ------------------KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ------------------hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 3566899999999999999999999999999999996543
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-22 Score=226.55 Aligned_cols=284 Identities=17% Similarity=0.304 Sum_probs=224.6
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
....|+++.|.|....++++=..|+|+|||.++...+.++. .+.+|.+..|.+..+|+++|+.|+.|+|++|+..+. +
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-V 90 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-V 90 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee-e
Confidence 45679999999999999999999999999999999999997 457899999999999999999999999999986431 1
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCC-eEEEEecCCcccccCCccCCCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~-~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
. .| ..|..-|.+|+.||.. ..+|++++|-+|++||...+ .+.++|++ |
T Consensus 91 ~--~F--------------eAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeG---------H---- 139 (794)
T KOG0276|consen 91 K--TF--------------EAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEG---------H---- 139 (794)
T ss_pred E--Ee--------------eccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcC---------c----
Confidence 1 11 2356679999999963 36999999999999999755 67888887 4
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEE
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 262 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~ 262 (1057)
+..|.+++|.+.|.+.+|+++-|++|++|.+.... |.
T Consensus 140 ----------------~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-------------------------~n-- 176 (794)
T KOG0276|consen 140 ----------------EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-------------------------PN-- 176 (794)
T ss_pred ----------------ceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-------------------------Cc--
Confidence 77899999996678999999999999999983210 00
Q ss_pred EEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEE
Q 001538 263 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 342 (1057)
Q Consensus 263 l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv 342 (1057)
.|
T Consensus 177 ------------------------------fT------------------------------------------------ 178 (794)
T KOG0276|consen 177 ------------------------------FT------------------------------------------------ 178 (794)
T ss_pred ------------------------------ee------------------------------------------------
Confidence 00
Q ss_pred EEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCC
Q 001538 343 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 422 (1057)
Q Consensus 343 ~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (1057)
+..|+..|+|+.|+..+
T Consensus 179 -------------------------------------l~gHekGVN~Vdyy~~g-------------------------- 195 (794)
T KOG0276|consen 179 -------------------------------------LEGHEKGVNCVDYYTGG-------------------------- 195 (794)
T ss_pred -------------------------------------eeccccCcceEEeccCC--------------------------
Confidence 01144556666664311
Q ss_pred CCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEE
Q 001538 423 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 502 (1057)
Q Consensus 423 ~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~La 502 (1057)
+...||||+.|.+|++||.++.. .+. .+.||...|+++.|.|.=..++
T Consensus 196 ---------------------dkpylIsgaDD~tiKvWDyQtk~--CV~---------TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 196 ---------------------DKPYLISGADDLTIKVWDYQTKS--CVQ---------TLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred ---------------------CcceEEecCCCceEEEeecchHH--HHH---------HhhcccccceEEEecCCCcEEE
Confidence 22379999999999999998765 111 2458999999999999999999
Q ss_pred EEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeC
Q 001538 503 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 582 (1057)
Q Consensus 503 vg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi 582 (1057)
+|++||+|+||.-.+.+... .+.-.-..|+|++-.+.++.+|+|++.|.| +..+
T Consensus 244 sgsEDGTvriWhs~Ty~lE~-------------------------tLn~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~l 297 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEK-------------------------TLNYGLERVWCIAAHKGDGKIAVGFDEGSV-TVKL 297 (794)
T ss_pred EecCCccEEEecCcceehhh-------------------------hhhcCCceEEEEeecCCCCeEEEeccCCcE-EEEc
Confidence 99999999999876654431 223345679999999988899999999965 4444
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=7.5e-23 Score=205.79 Aligned_cols=302 Identities=15% Similarity=0.155 Sum_probs=212.7
Q ss_pred CCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEE
Q 001538 139 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 218 (1057)
Q Consensus 139 ~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg 218 (1057)
..-.|++++-|-+|++|...+|.+.+++.+. +..|..++.. ||++.||++
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~-----------------------------dsqVNrLeiT-pdk~~LAaa 58 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHP-----------------------------DSQVNRLEIT-PDKKDLAAA 58 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecC-----------------------------ccceeeEEEc-CCcchhhhc
Confidence 3456888889999999999999999999871 6678899999 999999888
Q ss_pred EcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001538 219 YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSL 298 (1057)
Q Consensus 219 ~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l 298 (1057)
. .-.|+++|++++.. .|+...+ .+..-|..+.|-+ +++...+||
T Consensus 59 ~-~qhvRlyD~~S~np---------~Pv~t~e----~h~kNVtaVgF~~--------dgrWMyTgs-------------- 102 (311)
T KOG0315|consen 59 G-NQHVRLYDLNSNNP---------NPVATFE----GHTKNVTAVGFQC--------DGRWMYTGS-------------- 102 (311)
T ss_pred c-CCeeEEEEccCCCC---------CceeEEe----ccCCceEEEEEee--------cCeEEEecC--------------
Confidence 5 46899999987631 1332221 1222344443332 344444444
Q ss_pred CcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCccccc
Q 001538 299 EWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPG 378 (1057)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~ 378 (1057)
++|.+.+||.+.+.+-
T Consensus 103 -----------------------------------------------eDgt~kIWdlR~~~~q----------------- 118 (311)
T KOG0315|consen 103 -----------------------------------------------EDGTVKIWDLRSLSCQ----------------- 118 (311)
T ss_pred -----------------------------------------------CCceEEEEeccCcccc-----------------
Confidence 4567777772211000
Q ss_pred ccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEE
Q 001538 379 VIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVR 458 (1057)
Q Consensus 379 ~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVr 458 (1057)
..--+.++|+++. .++...-|++|.++|.||
T Consensus 119 R~~~~~spVn~vv-------------------------------------------------lhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 119 RNYQHNSPVNTVV-------------------------------------------------LHPNQTELISGDQSGNIR 149 (311)
T ss_pred hhccCCCCcceEE-------------------------------------------------ecCCcceEEeecCCCcEE
Confidence 0000123333332 344445689999999999
Q ss_pred EEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEec
Q 001538 459 IWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALP 538 (1057)
Q Consensus 459 iWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 538 (1057)
+||+...... +.+- .....+|.+++..|||.+|+.+..-|+..+|++-......
T Consensus 150 vWDl~~~~c~--~~li--------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s---------------- 203 (311)
T KOG0315|consen 150 VWDLGENSCT--HELI--------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS---------------- 203 (311)
T ss_pred EEEccCCccc--cccC--------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc----------------
Confidence 9999765311 1111 1223589999999999999999999999999997644322
Q ss_pred cCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCC
Q 001538 539 EGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKN 618 (1057)
Q Consensus 539 ~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~ 618 (1057)
-++|+..++.|.+-|....+|||+++||+++.|.+|+||+..+. ..... .+.+|..-|...+|+
T Consensus 204 ---~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~-~l~gh~rWvWdc~FS----------- 267 (311)
T KOG0315|consen 204 ---ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLEL-VLTGHQRWVWDCAFS----------- 267 (311)
T ss_pred ---cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEE-EeecCCceEEeeeec-----------
Confidence 24566789999999999999999999999999999999999887 22222 235688899999998
Q ss_pred CCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecCccccCCcceeEEEEeec
Q 001538 619 PNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIE 675 (1057)
Q Consensus 619 ~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~i~p~~~~~~~~~~~~d 675 (1057)
-|+.||++|+.|+.+++||++.|+.+.-..- +.-.+++|.+.|
T Consensus 268 -----------~dg~YlvTassd~~~rlW~~~~~k~v~qy~g---h~K~~vc~~ln~ 310 (311)
T KOG0315|consen 268 -----------ADGEYLVTASSDHTARLWDLSAGKEVRQYQG---HHKAAVCVALND 310 (311)
T ss_pred -----------cCccEEEecCCCCceeecccccCceeeecCC---cccccEEEEeeC
Confidence 7899999999999999999999986653311 112335565554
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=7.6e-23 Score=259.38 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=137.5
Q ss_pred CCcEEEEcCCCeEEEEEc------CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCC----c----eeeeecCCCCEE
Q 001538 6 DGRIKVIGGDGIEGLLIS------PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR----S----LACCLKWESNIT 71 (1057)
Q Consensus 6 dG~I~v~g~~~~e~~~~~------~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~----~----~l~tl~~~~~It 71 (1057)
+|-+++|........... .+...|..++|++++.+|++++.|+.|+|||+.+. . ....+.....|.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 456777776665543322 24667999999999999999999999999998642 1 223334457899
Q ss_pred EEEEecC-CcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC
Q 001538 72 AFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 150 (1057)
Q Consensus 72 a~~~sp~-~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG 150 (1057)
++++.+. +.++++|+.||+|+||++.. ++.. .. ...|...|.+++|+|. ++++|++++.||
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~---~~------------~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg 598 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVAR--SQLV---TE------------MKEHEKRVWSIDYSSA-DPTLLASGSDDG 598 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCC--CeEE---EE------------ecCCCCCEEEEEEcCC-CCCEEEEEcCCC
Confidence 9999874 78999999999999987643 2222 01 1235678999999986 477899999999
Q ss_pred EEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 151 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 151 ~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
+|++||+.++..+..+.. ...|.++.|++++|.+|++|+.||+|++||+.
T Consensus 599 ~v~iWd~~~~~~~~~~~~------------------------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKT------------------------------KANICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred EEEEEECCCCcEEEEEec------------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 999999999888776654 34689999975789999999999999999985
Q ss_pred C
Q 001538 231 T 231 (1057)
Q Consensus 231 ~ 231 (1057)
+
T Consensus 649 ~ 649 (793)
T PLN00181 649 N 649 (793)
T ss_pred C
Confidence 4
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=1.3e-24 Score=249.86 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=129.9
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
|+|.|-+++||+.|++.|+|...... ++.. +.||...|.|+.|+|++.++|+|+.|.+||+||..+...
T Consensus 501 F~P~GyYFatas~D~tArLWs~d~~~--PlRi---------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 501 FAPRGYYFATASHDQTARLWSTDHNK--PLRI---------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS 569 (707)
T ss_pred ecCCceEEEecCCCceeeeeecccCC--chhh---------hcccccccceEEECCcccccccCCCCceEEEEEcCCCcE
Confidence 34555688999999999999876543 2222 247888999999999999999999999999999866422
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP 600 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~ 600 (1057)
+..|.+|.++|++|+|||+|++||+|++||.|.+||+.+++++..+. +|++.
T Consensus 570 -------------------------VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~---~Ht~t 621 (707)
T KOG0263|consen 570 -------------------------VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK---GHTGT 621 (707)
T ss_pred -------------------------EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh---cccCc
Confidence 35788999999999999999999999999999999999998887654 59999
Q ss_pred eEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 601 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 601 V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
|.+|.|+ +||.+|++|+.|.+|++||...
T Consensus 622 i~SlsFS----------------------~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 622 IYSLSFS----------------------RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eeEEEEe----------------------cCCCEEEecCCCCeEEEEEchh
Confidence 9999998 8899999999999999999754
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=9.5e-23 Score=221.29 Aligned_cols=333 Identities=20% Similarity=0.265 Sum_probs=238.5
Q ss_pred cCCCCCeeEEEEEcCC-cEEEEEeCCCcEEEEECCCCc------e--eeee-------cCCCCEEEEEEecCCcEEEEEc
Q 001538 23 SPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRS------L--ACCL-------KWESNITAFSVISGSHFMYIGD 86 (1057)
Q Consensus 23 ~~~~~~v~~L~F~~~~-~~Lvs~s~d~~I~VWdl~s~~------~--l~tl-------~~~~~Ita~~~sp~~~~l~vG~ 86 (1057)
.++..+|...+|.|-. +.|++++.|-+.++|++.... + .|.+ +....||+++|..+|..|++|.
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 3467789999999955 388999999999999997511 1 1111 2236899999999999999999
Q ss_pred cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEe
Q 001538 87 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 166 (1057)
Q Consensus 87 ~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~ 166 (1057)
.+|.+++|+.+-. +. . ....|.+||.+|.|+- .|++||+++-|+++.|||..++.+.+.|
T Consensus 255 ~~G~~riw~~~G~---l~------~---------tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 255 EDGEARIWNKDGN---LI------S---------TLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred cCcEEEEEecCch---hh------h---------hhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEee
Confidence 9999999985532 22 1 1123578999999998 5999999999999999999999999888
Q ss_pred cCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcc
Q 001538 167 GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNV 246 (1057)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i 246 (1057)
.. | ..+-..+.|- +...+++.+.||.|+++.+.... |+
T Consensus 315 ~~---------~--------------------s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~-----------P~ 352 (524)
T KOG0273|consen 315 EF---------H--------------------SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR-----------PV 352 (524)
T ss_pred ee---------c--------------------cCCccceEEe--cCceEeecCCCceEEEEEecCCC-----------cc
Confidence 76 2 3333567898 34568999999999999884321 33
Q ss_pred eeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEE
Q 001538 247 VKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMIL 326 (1057)
Q Consensus 247 ~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~ 326 (1057)
.++ . .|..+|..++|.. .+.||.+.++|
T Consensus 353 ~t~---~-GH~g~V~alk~n~--------tg~LLaS~SdD---------------------------------------- 380 (524)
T KOG0273|consen 353 KTF---I-GHHGEVNALKWNP--------TGSLLASCSDD---------------------------------------- 380 (524)
T ss_pred eee---e-cccCceEEEEECC--------CCceEEEecCC----------------------------------------
Confidence 332 1 2667888888853 45666666655
Q ss_pred eecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhH
Q 001538 327 LSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLS 406 (1057)
Q Consensus 327 ~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~ 406 (1057)
++|.+|. +.+. ...-.+..|...|..+..++.+.
T Consensus 381 ---------------------~TlkiWs-------~~~~---------~~~~~l~~Hskei~t~~wsp~g~--------- 414 (524)
T KOG0273|consen 381 ---------------------GTLKIWS-------MGQS---------NSVHDLQAHSKEIYTIKWSPTGP--------- 414 (524)
T ss_pred ---------------------CeeEeee-------cCCC---------cchhhhhhhccceeeEeecCCCC---------
Confidence 3333333 1000 00001111333343333332221
Q ss_pred HHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCC
Q 001538 407 EIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR 486 (1057)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~ 486 (1057)
+. .....+..+++++.|++||+||+..+. +++++. .|.
T Consensus 415 -------------------------v~------~n~~~~~~l~sas~dstV~lwdv~~gv--~i~~f~---------kH~ 452 (524)
T KOG0273|consen 415 -------------------------VT------SNPNMNLMLASASFDSTVKLWDVESGV--PIHTLM---------KHQ 452 (524)
T ss_pred -------------------------cc------CCCcCCceEEEeecCCeEEEEEccCCc--eeEeec---------cCC
Confidence 10 122344579999999999999999887 566653 678
Q ss_pred CCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCC
Q 001538 487 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 566 (1057)
Q Consensus 487 ~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~ 566 (1057)
.+|.+|+|+|++++||+|+.||.|.||+.+..+... .+ ...+.|..|+|+.+|.
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~-------------------------s~-~~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK-------------------------SY-QGTGGIFELCWNAAGD 506 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccchheeE-------------------------ee-cCCCeEEEEEEcCCCC
Confidence 899999999999999999999999999987654321 11 2456699999999999
Q ss_pred EEEEEeCCceEEEEeCC
Q 001538 567 KLAVGFECGRVAVLDMN 583 (1057)
Q Consensus 567 ~lA~G~~dG~V~vwDi~ 583 (1057)
+|.++..||.++|.|++
T Consensus 507 kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 507 KLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEecCCCceEEEec
Confidence 99999999999999985
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=207.54 Aligned_cols=290 Identities=15% Similarity=0.181 Sum_probs=207.7
Q ss_pred CCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCC
Q 001538 122 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 201 (1057)
Q Consensus 122 ~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 201 (1057)
.++|...|.++.|++ +.+++++++-||.+.|||.-+..-++.+.- + ...
T Consensus 51 LkGH~~Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~TtnK~haipl---------~--------------------s~W 99 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWST--DSRRIVSASQDGKLIVWDSFTTNKVHAIPL---------P--------------------SSW 99 (343)
T ss_pred ecccccceeeeEecC--CcCeEEeeccCCeEEEEEcccccceeEEec---------C--------------------cee
Confidence 367888999999999 789999999999999999876655544432 1 678
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEE
Q 001538 202 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFV 281 (1057)
Q Consensus 202 Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv 281 (1057)
|...+|+ |.|++||+|+-|+...++++.+.+..... ++.+. + ..|..-+.+..+. +++
T Consensus 100 VMtCA~s-PSg~~VAcGGLdN~Csiy~ls~~d~~g~~------~v~r~-l--~gHtgylScC~f~--------dD~---- 157 (343)
T KOG0286|consen 100 VMTCAYS-PSGNFVACGGLDNKCSIYPLSTRDAEGNV------RVSRE-L--AGHTGYLSCCRFL--------DDN---- 157 (343)
T ss_pred EEEEEEC-CCCCeEEecCcCceeEEEecccccccccc------eeeee-e--cCccceeEEEEEc--------CCC----
Confidence 9999999 99999999999999999999764321100 11110 0 0111111111111 112
Q ss_pred ecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhh
Q 001538 282 YGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTL 361 (1057)
Q Consensus 282 ~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~ 361 (1057)
.++..+.+.+..+||....
T Consensus 158 ----------------------------------------------------------~ilT~SGD~TCalWDie~g--- 176 (343)
T KOG0286|consen 158 ----------------------------------------------------------HILTGSGDMTCALWDIETG--- 176 (343)
T ss_pred ----------------------------------------------------------ceEecCCCceEEEEEcccc---
Confidence 2333344456666772111
Q ss_pred hcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCcccc
Q 001538 362 LSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKC 441 (1057)
Q Consensus 362 l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~ 441 (1057)
+....+..|..-|- .+ ..
T Consensus 177 -------------~~~~~f~GH~gDV~------------------------------------------------sl-sl 194 (343)
T KOG0286|consen 177 -------------QQTQVFHGHTGDVM------------------------------------------------SL-SL 194 (343)
T ss_pred -------------eEEEEecCCcccEE------------------------------------------------EE-ec
Confidence 00011111221111 11 23
Q ss_pred CC-CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 442 HS-VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 442 ~~-~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
+| +++.+|+|+.|++.++||++.+.-.+ .+.+|...|++|.|.|+|.-+++|++|++.++||++....
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~q-----------tF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQ-----------TFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeE-----------eecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence 44 77899999999999999999886322 2348889999999999999999999999999999987543
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEe--eCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFS--LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 598 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~--~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~ 598 (1057)
. ..++ .-..+|++++||-.|++|.+||.|.++.|||.-.++.+..+ .||.
T Consensus 264 ~-------------------------a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L---~GHe 315 (343)
T KOG0286|consen 264 L-------------------------AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL---AGHE 315 (343)
T ss_pred E-------------------------eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe---eccC
Confidence 1 1222 23568999999999999999999999999999877766554 4799
Q ss_pred CCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 599 SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 599 ~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
..|++|..+ |||-.|.+|+-|.+++||.
T Consensus 316 NRvScl~~s----------------------~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 NRVSCLGVS----------------------PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CeeEEEEEC----------------------CCCcEEEecchhHheeecC
Confidence 999999988 9999999999999999993
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=6.7e-23 Score=209.69 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=125.6
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecC--CCeEEEEecCccEEEEEecCCC
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI--NSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd--~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
+++.+.|+||+.|.+|++||.-... .++.. -.+++.-|+||.|+|+ ..++++++.|++|++||++.-+
T Consensus 114 s~dn~qivSGSrDkTiklwnt~g~c---k~t~~-------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 114 STDNRQIVSGSRDKTIKLWNTLGVC---KYTIH-------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred cCCCceeecCCCcceeeeeeecccE---EEEEe-------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 3444579999999999999986553 12221 0123668999999998 6789999999999999997655
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCC
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 599 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~ 599 (1057)
.. ..+.+|++-++.+++||||.+.|+|+.||.+.+||++.++.+|.+. +..
T Consensus 184 l~-------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a~~ 234 (315)
T KOG0279|consen 184 LR-------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----AFD 234 (315)
T ss_pred hh-------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----CCC
Confidence 43 3566899999999999999999999999999999999999998874 689
Q ss_pred CeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 600 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 600 ~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
.|.+++|+ |...+|..++. -+|+|||.+++.+|-..
T Consensus 235 ~v~sl~fs----------------------pnrywL~~at~-~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 235 IVNSLCFS----------------------PNRYWLCAATA-TSIKIWDLESKAVVEEL 270 (315)
T ss_pred eEeeEEec----------------------CCceeEeeccC-CceEEEeccchhhhhhc
Confidence 99999998 54555665554 45999999999888654
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.6e-22 Score=229.56 Aligned_cols=311 Identities=15% Similarity=0.255 Sum_probs=229.9
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCcee
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~ 104 (1057)
...|+.|+|.|...+++++=..|.|++||.+=+.+++.+. ++++|..+.|.|+..++++|..|-.|+||+|...+. .
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc--l 86 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC--L 86 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee--h
Confidence 4679999999999999999999999999999999998885 779999999999999999999999999999986432 1
Q ss_pred ccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCC
Q 001538 105 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 184 (1057)
Q Consensus 105 ~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~ 184 (1057)
|+ ..+|..-|..+.||+ .-..++++++|.+|+||++.+++++.++.+ |
T Consensus 87 ---ft------------L~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltG---------H------ 134 (1202)
T KOG0292|consen 87 ---FT------------LLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTG---------H------ 134 (1202)
T ss_pred ---hh------------hccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEec---------C------
Confidence 22 234667799999999 577999999999999999999999999887 4
Q ss_pred CCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEE
Q 001538 185 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLH 264 (1057)
Q Consensus 185 ~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~ 264 (1057)
...|.|+.|| |....|++++-|.+|++||+..-. +-+.+++ .+
T Consensus 135 --------------nHYVMcAqFh-ptEDlIVSaSLDQTVRVWDisGLR--------------kk~~~pg-------~~- 177 (1202)
T KOG0292|consen 135 --------------NHYVMCAQFH-PTEDLIVSASLDQTVRVWDISGLR--------------KKNKAPG-------SL- 177 (1202)
T ss_pred --------------ceEEEeeccC-CccceEEEecccceEEEEeecchh--------------ccCCCCC-------Cc-
Confidence 7789999999 988999999999999999995421 1000000 00
Q ss_pred eeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEE
Q 001538 265 WSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVL 344 (1057)
Q Consensus 265 w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l 344 (1057)
+.++ .|... + .| +++. .
T Consensus 178 -----------e~~~--~~~~~-------------------------------~---~d--Lfg~------~-------- 194 (1202)
T KOG0292|consen 178 -----------EDQM--RGQQG-------------------------------N---SD--LFGQ------T-------- 194 (1202)
T ss_pred -----------hhhh--hcccc-------------------------------c---hh--hcCC------c--------
Confidence 0000 00000 0 00 0000 0
Q ss_pred cCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCC
Q 001538 345 TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHI 424 (1057)
Q Consensus 345 ~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (1057)
.. .+++.
T Consensus 195 ----Da--------------------------------------VVK~V------------------------------- 201 (1202)
T KOG0292|consen 195 ----DA--------------------------------------VVKHV------------------------------- 201 (1202)
T ss_pred ----Ce--------------------------------------eeeee-------------------------------
Confidence 00 00110
Q ss_pred cCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeee-ecCCCCCEEEEEEecCCCeEEE
Q 001538 425 KWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIE-VAGSRAPVSTLSFCFINSSLAV 503 (1057)
Q Consensus 425 ~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~-l~~~~~~V~~v~fspd~~~Lav 503 (1057)
+.|+-.++. -.+|++.-.+|++|+.|..|++|.++...- + +++ ..||-..|+++-|+|....+++
T Consensus 202 ---LEGHDRGVN-waAfhpTlpliVSG~DDRqVKlWrmnetKa-----W-----EvDtcrgH~nnVssvlfhp~q~lIlS 267 (1202)
T KOG0292|consen 202 ---LEGHDRGVN-WAAFHPTLPLIVSGADDRQVKLWRMNETKA-----W-----EVDTCRGHYNNVSSVLFHPHQDLILS 267 (1202)
T ss_pred ---ecccccccc-eEEecCCcceEEecCCcceeeEEEeccccc-----e-----eehhhhcccCCcceEEecCccceeEe
Confidence 111111110 014677777999999999999999875431 1 111 2488899999999999999999
Q ss_pred EecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCC
Q 001538 504 GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 583 (1057)
Q Consensus 504 g~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~ 583 (1057)
.++|+.++|||+.+... +.+|.......++|+-.|..+++|.|-++| +.|+-++
T Consensus 268 nsEDksirVwDm~kRt~-------------------------v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTS-------------------------VQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred cCCCccEEEEecccccc-------------------------eeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEEEc
Confidence 99999999999976432 235666678899999999999999988888 5666654
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=2.8e-24 Score=229.41 Aligned_cols=284 Identities=17% Similarity=0.262 Sum_probs=214.7
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeee-cCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCcee
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl-~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~ 104 (1057)
+.+|..++|.|+|++|+++++.|.+.+||..+-..-..+ .++..|+++.+++++.||++|+.+|.|++|......-+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~- 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI- 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH-
Confidence 568999999999999999999999999998432221222 257899999999999999999999999998754422111
Q ss_pred ccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCC
Q 001538 105 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 184 (1057)
Q Consensus 105 ~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~ 184 (1057)
....+...|.+++|+|. |.+ ++++++||+|+|||....+...++.+ |
T Consensus 175 ----------------~~ahh~eaIRdlafSpn-Dsk-F~t~SdDg~ikiWdf~~~kee~vL~G---------H------ 221 (464)
T KOG0284|consen 175 ----------------IQAHHAEAIRDLAFSPN-DSK-FLTCSDDGTIKIWDFRMPKEERVLRG---------H------ 221 (464)
T ss_pred ----------------hhHhhhhhhheeccCCC-Cce-eEEecCCCeEEEEeccCCchhheecc---------C------
Confidence 11233467999999996 454 99999999999999988777666655 3
Q ss_pred CCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEE
Q 001538 185 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLH 264 (1057)
Q Consensus 185 ~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~ 264 (1057)
.-.|.|+.|| |.-..||+|+.|+.|++||..++... . .+
T Consensus 222 --------------gwdVksvdWH-P~kgLiasgskDnlVKlWDprSg~cl-----------~--------------tl- 260 (464)
T KOG0284|consen 222 --------------GWDVKSVDWH-PTKGLIASGSKDNLVKLWDPRSGSCL-----------A--------------TL- 260 (464)
T ss_pred --------------CCCcceeccC-CccceeEEccCCceeEeecCCCcchh-----------h--------------hh-
Confidence 6689999999 88889999999999999999765210 0 00
Q ss_pred eeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEE
Q 001538 265 WSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVL 344 (1057)
Q Consensus 265 w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l 344 (1057)
T Consensus 261 -------------------------------------------------------------------------------- 260 (464)
T KOG0284|consen 261 -------------------------------------------------------------------------------- 260 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCC
Q 001538 345 TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHI 424 (1057)
Q Consensus 345 ~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (1057)
+. |...|+.+
T Consensus 261 ------h~------------------------------HKntVl~~---------------------------------- 270 (464)
T KOG0284|consen 261 ------HG------------------------------HKNTVLAV---------------------------------- 270 (464)
T ss_pred ------hh------------------------------ccceEEEE----------------------------------
Confidence 00 00111111
Q ss_pred cCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEE
Q 001538 425 KWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAV 503 (1057)
Q Consensus 425 ~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lav 503 (1057)
.+.+++++|+|++.|.+++++|++... .+.. +.+|...|+++.|+|-.. +|.+
T Consensus 271 ---------------~f~~n~N~Llt~skD~~~kv~DiR~mk--El~~---------~r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 271 ---------------KFNPNGNWLLTGSKDQSCKVFDIRTMK--ELFT---------YRGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred ---------------EEcCCCCeeEEccCCceEEEEehhHhH--HHHH---------hhcchhhheeeccccccccceee
Confidence 133444689999999999999998432 1222 237888999999999654 7788
Q ss_pred EecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCC
Q 001538 504 GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 583 (1057)
Q Consensus 504 g~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~ 583 (1057)
|+.||.|+.|.+....... ..-.+|...|++|++.|-|..||+|+.|.++++|...
T Consensus 325 gg~Dgsvvh~~v~~~~p~~------------------------~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLG------------------------EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccCCCceEEEecccccccc------------------------CCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999999987332211 1223699999999999999999999999999999874
Q ss_pred C
Q 001538 584 L 584 (1057)
Q Consensus 584 ~ 584 (1057)
.
T Consensus 381 r 381 (464)
T KOG0284|consen 381 R 381 (464)
T ss_pred C
Confidence 3
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=7e-22 Score=216.24 Aligned_cols=283 Identities=18% Similarity=0.284 Sum_probs=203.7
Q ss_pred CCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeE
Q 001538 124 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 203 (1057)
Q Consensus 124 ~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vt 203 (1057)
.|..+|.++.|+| ++++|++++.+|.|.+||+.+++....+.. | ...+.
T Consensus 7 ~h~~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~---------~--------------------~~~i~ 55 (289)
T cd00200 7 GHTGGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRTLKG---------H--------------------TGPVR 55 (289)
T ss_pred ccCCCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEEEec---------C--------------------Cccee
Confidence 4678999999999 588899999999999999998876655543 2 56788
Q ss_pred EEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEec
Q 001538 204 ALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYG 283 (1057)
Q Consensus 204 sl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~g 283 (1057)
++.|+ |++..+++++.||.|.+||+.++. .+..+ ..+..+|..+.|.. ++.+++++
T Consensus 56 ~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~-----------~~~~~----~~~~~~i~~~~~~~--------~~~~~~~~ 111 (289)
T cd00200 56 DVAAS-ADGTYLASGSSDKTIRLWDLETGE-----------CVRTL----TGHTSYVSSVAFSP--------DGRILSSS 111 (289)
T ss_pred EEEEC-CCCCEEEEEcCCCeEEEEEcCccc-----------ceEEE----eccCCcEEEEEEcC--------CCCEEEEe
Confidence 99999 999999999999999999997642 11111 11223455554432 12233322
Q ss_pred CCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhc
Q 001538 284 GDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLS 363 (1057)
Q Consensus 284 g~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~ 363 (1057)
..+|.+.+||....
T Consensus 112 -------------------------------------------------------------~~~~~i~~~~~~~~----- 125 (289)
T cd00200 112 -------------------------------------------------------------SRDKTIKVWDVETG----- 125 (289)
T ss_pred -------------------------------------------------------------cCCCeEEEEECCCc-----
Confidence 22556667662100
Q ss_pred ccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCC
Q 001538 364 QQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHS 443 (1057)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~ 443 (1057)
.....+..|...++++. +++
T Consensus 126 -----------~~~~~~~~~~~~i~~~~-------------------------------------------------~~~ 145 (289)
T cd00200 126 -----------KCLTTLRGHTDWVNSVA-------------------------------------------------FSP 145 (289)
T ss_pred -----------EEEEEeccCCCcEEEEE-------------------------------------------------EcC
Confidence 00000111222222222 344
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~ 523 (1057)
+++++++++.||.|++||+..+.. +..+ ..|...|.++.|+|+++.+++++.+|.|++|++.....
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~--~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--- 211 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKC--VATL---------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC--- 211 (289)
T ss_pred cCCEEEEEcCCCcEEEEEcccccc--ceeE---------ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce---
Confidence 456788888899999999986552 1111 24556899999999999999999999999999865322
Q ss_pred eeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEE
Q 001538 524 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIIS 603 (1057)
Q Consensus 524 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~s 603 (1057)
...+..|...|++++|+|++.++++++.+|.|++||+.++..+..+. +|...|.+
T Consensus 212 ----------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~ 266 (289)
T cd00200 212 ----------------------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTS 266 (289)
T ss_pred ----------------------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEE
Confidence 12344688899999999999899999989999999999888777654 48889999
Q ss_pred EEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 604 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 604 l~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
++|+ +++.+|++++.||.|.+||
T Consensus 267 ~~~~----------------------~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 267 LAWS----------------------PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEC----------------------CCCCEEEEecCCCeEEecC
Confidence 9998 7788999999999999996
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.1e-23 Score=216.61 Aligned_cols=299 Identities=16% Similarity=0.228 Sum_probs=234.4
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
.+..+|..+-|.|+--..++++.|.+|++||..++++..+++.+ ..+..++++..|++++..+.|-.+.+|.++..-.
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~- 184 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR- 184 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH-
Confidence 35678999999999977778889999999999999999888754 5699999999999999999998888887654211
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
++. .-..|...|.++.|-| .|.++++++.|.+|+.|++.+|-++.+|.+ |
T Consensus 185 ------c~k---------s~~gh~h~vS~V~f~P--~gd~ilS~srD~tik~We~~tg~cv~t~~~---------h---- 234 (406)
T KOG0295|consen 185 ------CIK---------SLIGHEHGVSSVFFLP--LGDHILSCSRDNTIKAWECDTGYCVKTFPG---------H---- 234 (406)
T ss_pred ------HHH---------HhcCcccceeeEEEEe--cCCeeeecccccceeEEecccceeEEeccC---------c----
Confidence 111 1123556799999999 588999999999999999999999999887 3
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEE
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 262 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~ 262 (1057)
...|..+..+ .||..+++++.|.+|++|-+.+.. |+.+. -.|..||.+
T Consensus 235 ----------------~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~t~~---------~k~~l------R~hEh~vEc 282 (406)
T KOG0295|consen 235 ----------------SEWVRMVRVN-QDGTIIASCSNDQTLRVWVVATKQ---------CKAEL------REHEHPVEC 282 (406)
T ss_pred ----------------hHhEEEEEec-CCeeEEEecCCCceEEEEEeccch---------hhhhh------hccccceEE
Confidence 5588889999 999999999999999999997753 21111 124456666
Q ss_pred EEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEE
Q 001538 263 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 342 (1057)
Q Consensus 263 l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv 342 (1057)
++|.... ..
T Consensus 283 i~wap~~-----~~------------------------------------------------------------------ 291 (406)
T KOG0295|consen 283 IAWAPES-----SY------------------------------------------------------------------ 291 (406)
T ss_pred EEecccc-----cC------------------------------------------------------------------
Confidence 6664311 00
Q ss_pred EEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCC
Q 001538 343 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 422 (1057)
Q Consensus 343 ~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (1057)
+ .+ . . + ++
T Consensus 292 ----------------------~-------------~i-------------~---~------------a---t~------ 299 (406)
T KOG0295|consen 292 ----------------------P-------------SI-------------S---E------------A---TG------ 299 (406)
T ss_pred ----------------------c-------------ch-------------h---h------------c---cC------
Confidence 0 00 0 0 0 00
Q ss_pred CCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEE
Q 001538 423 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 502 (1057)
Q Consensus 423 ~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~La 502 (1057)
....++++.+|+.|++||+||++++. .+.++ .||..-|..++|+|.|++|+
T Consensus 300 ------------------~~~~~~~l~s~SrDktIk~wdv~tg~--cL~tL---------~ghdnwVr~~af~p~Gkyi~ 350 (406)
T KOG0295|consen 300 ------------------STNGGQVLGSGSRDKTIKIWDVSTGM--CLFTL---------VGHDNWVRGVAFSPGGKYIL 350 (406)
T ss_pred ------------------CCCCccEEEeecccceEEEEeccCCe--EEEEE---------ecccceeeeeEEcCCCeEEE
Confidence 00123478999999999999999986 34443 37888999999999999999
Q ss_pred EEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeC
Q 001538 503 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 582 (1057)
Q Consensus 503 vg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi 582 (1057)
++.+|+++++||++.. +|...+..|..=|+++.|..+-.++++|+-|.+++||..
T Consensus 351 ScaDDktlrvwdl~~~-------------------------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKNL-------------------------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecCCcEEEEEeccc-------------------------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999654 334466789999999999999999999999999999964
No 35
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.4e-20 Score=205.39 Aligned_cols=405 Identities=17% Similarity=0.275 Sum_probs=252.2
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCC--------cEEEEECCCCceeeeec-CCCCEEEEEEecC--CcEEEEEccCC--cE
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDN--------EIQVWSLESRSLACCLK-WESNITAFSVISG--SHFMYIGDENG--LM 91 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~--------~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~--~~~l~vG~~~G--~v 91 (1057)
+...|++|...|+.-+++++-.-+ .+++||..+-..++.+. ++..|+|++|++. +.++..-+.+. .+
T Consensus 103 H~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~l 182 (626)
T KOG2106|consen 103 HNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHML 182 (626)
T ss_pred CCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcccc
Confidence 356799999999984343332223 58999988877787775 6778999999874 23333222211 22
Q ss_pred EEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcc
Q 001538 92 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDL 171 (1057)
Q Consensus 92 ~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~ 171 (1057)
+||+|. +....+..+.....|....|||.| .+ |++.+..|.+.+|+++.+.+..+.+- +
T Consensus 183 SVWdWq-----------------k~~~~~~vk~sne~v~~a~FHPtd-~n-liit~Gk~H~~Fw~~~~~~l~k~~~~--f 241 (626)
T KOG2106|consen 183 SVWDWQ-----------------KKAKLGPVKTSNEVVFLATFHPTD-PN-LIITCGKGHLYFWTLRGGSLVKRQGI--F 241 (626)
T ss_pred chhhch-----------------hhhccCcceeccceEEEEEeccCC-Cc-EEEEeCCceEEEEEccCCceEEEeec--c
Confidence 333332 112222223345568899999985 44 99999999999999998877654332 1
Q ss_pred cccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeec
Q 001538 172 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLEL 251 (1057)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l 251 (1057)
++.+.+.|.|++|. +||. ++||.++|.|.+|+..+. .+.+-..
T Consensus 242 -----------------------ek~ekk~Vl~v~F~-engd-viTgDS~G~i~Iw~~~~~------------~~~k~~~ 284 (626)
T KOG2106|consen 242 -----------------------EKREKKFVLCVTFL-ENGD-VITGDSGGNILIWSKGTN------------RISKQVH 284 (626)
T ss_pred -----------------------ccccceEEEEEEEc-CCCC-EEeecCCceEEEEeCCCc------------eEEeEee
Confidence 11225789999999 8887 789999999999998442 2222211
Q ss_pred ccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCC-CcccEEEEeecC
Q 001538 252 SSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT-GSFADMILLSSA 330 (1057)
Q Consensus 252 ~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~-~~~~d~~~~p~~ 330 (1057)
.|..-|..+ +. -.+|.|+- ||.| ..+.. |+..++.. +...+|-+ ++++. +...
T Consensus 285 ---aH~ggv~~L--~~------lr~GtllS-GgKD------Rki~~--Wd~~y~k~---r~~elPe~~G~iRt---v~e~ 338 (626)
T KOG2106|consen 285 ---AHDGGVFSL--CM------LRDGTLLS-GGKD------RKIIL--WDDNYRKL---RETELPEQFGPIRT---VAEG 338 (626)
T ss_pred ---ecCCceEEE--EE------ecCccEee-cCcc------ceEEe--cccccccc---ccccCchhcCCeeE---EecC
Confidence 244456655 22 12455554 8888 33333 33322221 12233322 11211 1111
Q ss_pred CCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHh
Q 001538 331 GATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIAT 410 (1057)
Q Consensus 331 ~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~ 410 (1057)
.. .+++.+..+.|..=. + +. ..+...
T Consensus 339 ----~~---di~vGTtrN~iL~Gt-------------------------~--~~-~f~~~v------------------- 364 (626)
T KOG2106|consen 339 ----KG---DILVGTTRNFILQGT-------------------------L--EN-GFTLTV------------------- 364 (626)
T ss_pred ----CC---cEEEeeccceEEEee-------------------------e--cC-CceEEE-------------------
Confidence 11 133333332222100 0 00 000000
Q ss_pred hccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEE
Q 001538 411 FTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVS 490 (1057)
Q Consensus 411 ~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~ 490 (1057)
.|+......+ +.++..+.++|++.|+.|++|+-.. ++.... + ..++.
T Consensus 365 ------------------~gh~delwgl-a~hps~~q~~T~gqdk~v~lW~~~k----~~wt~~-------~---~d~~~ 411 (626)
T KOG2106|consen 365 ------------------QGHGDELWGL-ATHPSKNQLLTCGQDKHVRLWNDHK----LEWTKI-------I---EDPAE 411 (626)
T ss_pred ------------------EecccceeeE-EcCCChhheeeccCcceEEEccCCc----eeEEEE-------e---cCcee
Confidence 0111111112 4678888999999999999999222 222211 1 13899
Q ss_pred EEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEE
Q 001538 491 TLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAV 570 (1057)
Q Consensus 491 ~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~ 570 (1057)
|+.|+|.+ .+|+|...|...+.|.++... ..++..+.++++++|||+|.+||+
T Consensus 412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l--------------------------v~~~~d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGTATGRWFVLDTETQDL--------------------------VTIHTDNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred EeeccCcc-eEEEeeccceEEEEeccccee--------------------------EEEEecCCceEEEEEcCCCCEEEE
Confidence 99999999 999999999999998866322 133344789999999999999999
Q ss_pred EeCCceEEEEeCCCCeEEE-EeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 571 GFECGRVAVLDMNLLSVLF-FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 571 G~~dG~V~vwDi~~~~~l~-~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
|+.|+.|.|+-+....-.| ..... +.++|+.|.|+ +|+++|.+-+-|-.|..|..
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithLDwS----------------------~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHLDWS----------------------SDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEeeee--cCceeEEeeec----------------------CCCceEEeccCceEEEEEcc
Confidence 9999999999985433222 22222 34999999999 88999999999999999954
Q ss_pred CC
Q 001538 650 SS 651 (1057)
Q Consensus 650 ~t 651 (1057)
..
T Consensus 521 ~~ 522 (626)
T KOG2106|consen 521 SE 522 (626)
T ss_pred cc
Confidence 43
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=4.1e-21 Score=210.18 Aligned_cols=282 Identities=20% Similarity=0.310 Sum_probs=212.1
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
.+..+|.+++|++++.+|++++.||.|.+|++.+++....+. +...++++.+.++++++++++.+|.|.+|+++...
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-- 84 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-- 84 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc--
Confidence 356789999999999999999999999999999888766665 34678899999999999999999988888765421
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
.. ..+ ..+...|.++.|+| +++.++++..+|.|.+||+.+++....+.. |
T Consensus 85 ~~---~~~------------~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------~---- 134 (289)
T cd00200 85 CV---RTL------------TGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVETGKCLTTLRG---------H---- 134 (289)
T ss_pred ce---EEE------------eccCCcEEEEEEcC--CCCEEEEecCCCeEEEEECCCcEEEEEecc---------C----
Confidence 11 111 12345799999999 466666666699999999998887776653 2
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEE
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 262 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~ 262 (1057)
...|++++|+ |++.++++++.||.|++||+.++. . +..
T Consensus 135 ----------------~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~-----------~--------------~~~ 172 (289)
T cd00200 135 ----------------TDWVNSVAFS-PDGTFVASSSQDGTIKLWDLRTGK-----------C--------------VAT 172 (289)
T ss_pred ----------------CCcEEEEEEc-CcCCEEEEEcCCCcEEEEEccccc-----------c--------------cee
Confidence 5689999999 999999999889999999985321 0 000
Q ss_pred EEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEE
Q 001538 263 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 342 (1057)
Q Consensus 263 l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv 342 (1057)
+ .
T Consensus 173 ~---------------------------------~--------------------------------------------- 174 (289)
T cd00200 173 L---------------------------------T--------------------------------------------- 174 (289)
T ss_pred E---------------------------------e---------------------------------------------
Confidence 0 0
Q ss_pred EEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCC
Q 001538 343 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 422 (1057)
Q Consensus 343 ~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (1057)
.+...++++.
T Consensus 175 ---------------------------------------~~~~~i~~~~------------------------------- 184 (289)
T cd00200 175 ---------------------------------------GHTGEVNSVA------------------------------- 184 (289)
T ss_pred ---------------------------------------cCccccceEE-------------------------------
Confidence 0000111111
Q ss_pred CCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEE
Q 001538 423 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 502 (1057)
Q Consensus 423 ~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~La 502 (1057)
+.++++.+++++.||.|++||...+.. +..+ ..|...|.++.|+|++.+++
T Consensus 185 ------------------~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~---------~~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 185 ------------------FSPDGEKLLSSSSDGTIKLWDLSTGKC--LGTL---------RGHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred ------------------ECCCcCEEEEecCCCcEEEEECCCCce--ecch---------hhcCCceEEEEEcCCCcEEE
Confidence 222334577777899999999987552 2222 14556899999999988888
Q ss_pred EEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001538 503 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 581 (1057)
Q Consensus 503 vg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwD 581 (1057)
+++.+|.|++|++..... ...+..|...|++++|+|++++|++++.||.|+|||
T Consensus 236 ~~~~~~~i~i~~~~~~~~-------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 236 SGSEDGTIRVWDLRTGEC-------------------------VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCCcee-------------------------EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888899999999865322 234557888999999999999999999999999996
No 37
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=5.3e-21 Score=215.16 Aligned_cols=519 Identities=12% Similarity=0.121 Sum_probs=293.7
Q ss_pred EEEEcCC-CeEEEEEcCCCCCeeEEEEEcCCcEEEEEe--CCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEE-
Q 001538 9 IKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISIT--NDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMY- 83 (1057)
Q Consensus 9 I~v~g~~-~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s--~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~- 83 (1057)
|.+|..+ ..+..+...++-++++++|+++|+|++++- ..-.++||++.....++.+. +.-.+||++|+|.++|++
T Consensus 60 VVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvS 139 (1080)
T KOG1408|consen 60 VVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVS 139 (1080)
T ss_pred EEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEe
Confidence 4456533 233344445566999999999999999987 44679999999888777775 446889999999888875
Q ss_pred EEccC-----------------------------------------CcEEEEEEeCCCCcee------ccCcccc----h
Q 001538 84 IGDEN-----------------------------------------GLMSVIKYDADEGKLF------QLPYNIS----A 112 (1057)
Q Consensus 84 vG~~~-----------------------------------------G~v~v~~~d~~~~~l~------~~~~~i~----~ 112 (1057)
+|.+. ..|++|.++..+ +.. .+.|-+. +
T Consensus 140 VGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~-KykdpiPl~gRs~~lg~lr~n 218 (1080)
T KOG1408|consen 140 VGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQS-KYKDPIPLPGRSYFLGNLRFN 218 (1080)
T ss_pred eccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccc-cccCCccccchhhhccccccc
Confidence 23322 234455544322 000 0001000 0
Q ss_pred hhhhhhcCCC--CC--------------------------CCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEE
Q 001538 113 DALSEKAGFP--LL--------------------------SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF 164 (1057)
Q Consensus 113 ~~~~~~~g~~--~~--------------------------~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~ 164 (1057)
++..-+.|.. .. ....-.||..+.+ ++++|+.+|.|+||+..+-.-..
T Consensus 219 ~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r----~I~cgCa~g~vrlFnp~tL~y~~ 294 (1080)
T KOG1408|consen 219 EFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSR----LIACGCAKGMVRLFNPETLDYAG 294 (1080)
T ss_pred hhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecc----eEEEeeccceeeecCcchhhhcc
Confidence 1110011100 00 0111235555543 69999999999999987766554
Q ss_pred EecCCcccccCCccCCCCCCCCCcc--------cCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccC
Q 001538 165 VGGGKDLQLKDGVVDSPSEGDSTFL--------EGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK 236 (1057)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~~~~~~~~--------~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~ 236 (1057)
++.. +.+.|-+. .........-+.-.++.|. +...+|.+.|.|.+|++||+.+....
T Consensus 295 Tlpr-------------~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fd-et~~klscVYndhSlYvWDvrD~~kv- 359 (1080)
T KOG1408|consen 295 TLPR-------------SHALGSDTANLSQPEPKNSESSPAIFPDAIACQFD-ETTDKLSCVYNDHSLYVWDVRDVNKV- 359 (1080)
T ss_pred cccc-------------ccccccchhhcccccccccccCcccCCceeEEEec-CCCceEEEEEcCceEEEEeccccccc-
Confidence 4432 11111110 0011122235566788899 88999999999999999999875321
Q ss_pred CCCCCCCCcceeeecccccCCccEEEEEe-eccC--c-CCCCCCceEEEecCCCCCCcceEEEEEcCcc----cccccce
Q 001538 237 GQQTGSRNNVVKLELSSAERRLPVIVLHW-STNK--E-SRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS----SGMENLR 308 (1057)
Q Consensus 237 ~~~~~~~~~i~kl~l~~~~~~~pI~~l~w-~~~~--~-~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~----~~~~~~~ 308 (1057)
+.....+ + |...|-.+.- .|.. + .+--+. .-|++.+.| +.+++|+++.- .+-+++-
T Consensus 360 ---gk~~s~l----y----HS~ciW~Ve~~p~nv~~~~~aclp~-~cF~TCSsD----~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 360 ---GKCSSML----Y----HSACIWDVENLPCNVHSPTAACLPR-GCFTTCSSD----GTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred ---cceeeee----e----ccceeeeeccccccccCcccccCCc-cceeEecCC----CcEEEeecccccccceeecccc
Confidence 1110000 0 1111100000 0000 0 000012 236666666 57888887752 1111110
Q ss_pred eeeeeeecCC--------------------------CcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhh
Q 001538 309 CVSRVDITLT--------------------------GSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 362 (1057)
Q Consensus 309 ~~~~~~l~~~--------------------------~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l 362 (1057)
......++.. ..+..+...|... .|......|.|++||..++
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq--------hLAsGDr~GnlrVy~Lq~l---- 491 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ--------HLASGDRGGNLRVYDLQEL---- 491 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc--------eecccCccCceEEEEehhh----
Confidence 0000000000 0122222222221 2222334589999984432
Q ss_pred cccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhH--------HHHhhccccCCCCCCCCCcCCCCCCCCC
Q 001538 363 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLS--------EIATFTKLHSSHTQAGHIKWPLSGGVPS 434 (1057)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~--------~~~~~~~~~~~~~~~~~~~wpl~Gg~~~ 434 (1057)
.+...+..|++.|.|+.|+.-. ...+.+. .+.+...+ ....+ .+.|+..+
T Consensus 492 ------------~~~~~~eAHesEilcLeyS~p~---~~~kLLASasrdRlIHV~Dv~rn-y~l~q------tld~HSss 549 (1080)
T KOG1408|consen 492 ------------EYTCFMEAHESEILCLEYSFPV---LTNKLLASASRDRLIHVYDVKRN-YDLVQ------TLDGHSSS 549 (1080)
T ss_pred ------------hhhhheecccceeEEEeecCch---hhhHhhhhccCCceEEEEecccc-cchhh------hhcccccc
Confidence 2233455689999999885311 0001110 00111110 11110 03454444
Q ss_pred CCCccccCCC--CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEE
Q 001538 435 PVPITKCHSV--DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYI 512 (1057)
Q Consensus 435 ~~~~~~~~~~--~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l 512 (1057)
..++ .|... ...+|+++.|.+|-|--.....-..++.-.+++. ++ .-+..++..|..++++++++|..|+|
T Consensus 550 ITsv-KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~-----~k-tTlYDm~Vdp~~k~v~t~cQDrniri 622 (1080)
T KOG1408|consen 550 ITSV-KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL-----SK-TTLYDMAVDPTSKLVVTVCQDRNIRI 622 (1080)
T ss_pred eeEE-EEeecCCceEEEeccCchhhheehhccccCceecccccccc-----cc-ceEEEeeeCCCcceEEEEecccceEE
Confidence 4333 23333 3678999999998654332111011222211111 22 36888999999999999999999999
Q ss_pred EEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEee
Q 001538 513 YNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTD 592 (1057)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~ 592 (1057)
|++...+....|. --+.|.+..--+...|.|-|||+.+.|.++.++|..+++++.++
T Consensus 623 f~i~sgKq~k~FK----------------------gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m- 679 (1080)
T KOG1408|consen 623 FDIESGKQVKSFK----------------------GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM- 679 (1080)
T ss_pred Eeccccceeeeec----------------------ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-
Confidence 9998765432210 12247788888999999999999999999999999999998765
Q ss_pred cCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 593 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 593 ~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
.||+..||.+.|. +|-+.|++.+.||.|+||-+..
T Consensus 680 --~GHsE~VTG~kF~----------------------nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 --TGHSEAVTGVKFL----------------------NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --cCcchheeeeeec----------------------ccchhheeecCCceEEEEECch
Confidence 3699999999998 7778899999999999998765
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3e-21 Score=228.40 Aligned_cols=288 Identities=17% Similarity=0.246 Sum_probs=217.5
Q ss_pred CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEE
Q 001538 67 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 146 (1057)
Q Consensus 67 ~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~ 146 (1057)
...|+++.|++++.+++.++.++.+++|........+. . ....|...|..++|+| +|.+++++
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~---~------------~l~~h~~~v~~~~fs~--d~~~l~s~ 221 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLL---R------------ELSGHTRGVSDVAFSP--DGSYLLSG 221 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhh---c------------cccccccceeeeEECC--CCcEEEEe
Confidence 36899999999999999999999999998733210011 0 1244677899999999 79899999
Q ss_pred ECCCEEEEEEc-cCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEE
Q 001538 147 YENALVILWDV-SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 225 (1057)
Q Consensus 147 ~~dG~I~lWdl-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~ 225 (1057)
+.|++|++||+ ..+..++++.+ | ...|++++|+ |+|+.+++|+.|++|+
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~g---------H--------------------~~~v~~~~f~-p~g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKG---------H--------------------STYVTSVAFS-PDGNLLVSGSDDGTVR 271 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecC---------C--------------------CCceEEEEec-CCCCEEEEecCCCcEE
Confidence 99999999999 45588888876 4 7899999999 9999999999999999
Q ss_pred EEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccc
Q 001538 226 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 305 (1057)
Q Consensus 226 lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~ 305 (1057)
+||+.++.. +..+
T Consensus 272 iWd~~~~~~-------------------------~~~l------------------------------------------ 284 (456)
T KOG0266|consen 272 IWDVRTGEC-------------------------VRKL------------------------------------------ 284 (456)
T ss_pred EEeccCCeE-------------------------EEee------------------------------------------
Confidence 999965310 0000
Q ss_pred cceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCC
Q 001538 306 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 385 (1057)
Q Consensus 306 ~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 385 (1057)
+.|..
T Consensus 285 ---------------------------------------------------------------------------~~hs~ 289 (456)
T KOG0266|consen 285 ---------------------------------------------------------------------------KGHSD 289 (456)
T ss_pred ---------------------------------------------------------------------------eccCC
Confidence 01223
Q ss_pred cceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCC
Q 001538 386 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 465 (1057)
Q Consensus 386 ~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~ 465 (1057)
.|++++ +.+++++|++++.||.||+||+..+
T Consensus 290 ~is~~~-------------------------------------------------f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 290 GISGLA-------------------------------------------------FSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred ceEEEE-------------------------------------------------ECCCCCEEEEcCCCccEEEEECCCC
Confidence 333333 3445568999999999999999988
Q ss_pred ceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCccee
Q 001538 466 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 545 (1057)
Q Consensus 466 ~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 545 (1057)
....+..+.. ..... +++++.|+|++.+|+++..|++|++|++......
T Consensus 321 ~~~~~~~~~~------~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~------------------------ 369 (456)
T KOG0266|consen 321 SKLCLKLLSG------AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV------------------------ 369 (456)
T ss_pred ceeeeecccC------CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce------------------------
Confidence 7321111110 01112 6999999999999999999999999999865432
Q ss_pred eEEEeeCCC---CeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCC-CCCeEEEEEeeccCcccccCCCCC
Q 001538 546 RAVFSLVNS---PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS-SSPIISMTWTEFKNTHSLAKNPNH 621 (1057)
Q Consensus 546 ~~~~~~h~~---~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~-~~~V~sl~f~~~~~~~~~~~~~~~ 621 (1057)
..+.+|.. .+.+..+++.|+++.+|+.|+.|.+||+.++..+..+. +| ...|..+.++
T Consensus 370 -~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~---~h~~~~~~~~~~~-------------- 431 (456)
T KOG0266|consen 370 -GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE---GHSKAAVSDLSSH-------------- 431 (456)
T ss_pred -eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc---CCCCCceeccccC--------------
Confidence 12334433 45555668899999999999999999999877766554 48 7888888887
Q ss_pred CCCcCCCCCCCcEEEEEe--cCCeEEEEeC
Q 001538 622 SEREVPVNPAEEVIIVLF--KDAKISIVGG 649 (1057)
Q Consensus 622 ~~~~~~~~~d~~~L~sgt--~dg~i~v~d~ 649 (1057)
+...++++++ .|+.+++|..
T Consensus 432 --------~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 432 --------PTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred --------CCcCeeeecCcCCCceEEEecC
Confidence 6678888888 8999999954
No 39
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.4e-19 Score=201.65 Aligned_cols=491 Identities=14% Similarity=0.174 Sum_probs=289.9
Q ss_pred ccccCCcEEEEcCCC---eEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEec
Q 001538 2 CLCRDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVIS 77 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~---~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp 77 (1057)
|+=.+|.|-+|-..+ .|-++..|....|..|+|++++ +|++++.+|.|.-||+.+++.+..+. ..+.|++++..|
T Consensus 42 vsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p 120 (691)
T KOG2048|consen 42 VSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP 120 (691)
T ss_pred eeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC
Confidence 345789999997543 3555667778889999999666 89999999999999999999998886 458999999999
Q ss_pred CCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEc
Q 001538 78 GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 157 (1057)
Q Consensus 78 ~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl 157 (1057)
..+.+++|+++| .+..++...+++. |...-. ...+.|.+|.|+| ++++|++|+.||.|++||+
T Consensus 121 ~~~~l~IgcddG--vl~~~s~~p~~I~---~~r~l~----------rq~sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 121 ENTILAIGCDDG--VLYDFSIGPDKIT---YKRSLM----------RQKSRVLSLSWNP--TGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred ccceEEeecCCc--eEEEEecCCceEE---EEeecc----------cccceEEEEEecC--CccEEEecccCceEEEEEc
Confidence 999999999999 4555566555565 332210 0146799999999 6888999999999999999
Q ss_pred cCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCC
Q 001538 158 SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKG 237 (1057)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~ 237 (1057)
..+..++...- |+.+ - .+.+..-|+++.|. .++ .|++|.+.|+|.|||...++...
T Consensus 184 ~~~~t~~~~~~---~~d~-----------l-------~k~~~~iVWSv~~L-rd~-tI~sgDS~G~V~FWd~~~gTLiq- 239 (691)
T KOG2048|consen 184 KSGQTLHIITM---QLDR-----------L-------SKREPTIVWSVLFL-RDS-TIASGDSAGTVTFWDSIFGTLIQ- 239 (691)
T ss_pred CCCceEEEeee---cccc-----------c-------ccCCceEEEEEEEe-ecC-cEEEecCCceEEEEcccCcchhh-
Confidence 99977662221 1100 0 01124567888888 666 59999999999999998875321
Q ss_pred CCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcC----cccccccceeeeee
Q 001538 238 QQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE----WSSGMENLRCVSRV 313 (1057)
Q Consensus 238 ~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~----~~~~~~~~~~~~~~ 313 (1057)
+...+...|.+++- ++...+++++|.+. ..+....-. |-. ..+.
T Consensus 240 --------------S~~~h~adVl~Lav-------~~~~d~vfsaGvd~----~ii~~~~~~~~~~wv~-------~~~r 287 (691)
T KOG2048|consen 240 --------------SHSCHDADVLALAV-------ADNEDRVFSAGVDP----KIIQYSLTTNKSEWVI-------NSRR 287 (691)
T ss_pred --------------hhhhhhcceeEEEE-------cCCCCeEEEccCCC----ceEEEEecCCccceee-------eccc
Confidence 11123334555522 33345666666654 222221100 110 0011
Q ss_pred eecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEE
Q 001538 314 DITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFM 393 (1057)
Q Consensus 314 ~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~ 393 (1057)
.++ ...+..|..++. .++..+.++.|++.-... +... .......+| +.+.+.+..
T Consensus 288 ~~h-~hdvrs~av~~~----------~l~sgG~d~~l~i~~s~~------~~~~-~h~~~~~~p-----~~~~v~~a~-- 342 (691)
T KOG2048|consen 288 DLH-AHDVRSMAVIEN----------ALISGGRDFTLAICSSRE------FKNM-DHRQKNLFP-----ASDRVSVAP-- 342 (691)
T ss_pred cCC-cccceeeeeecc----------eEEecceeeEEEEccccc------cCch-hhhcccccc-----ccceeecCc--
Confidence 111 112334443332 333334455555422100 0000 000000111 011111100
Q ss_pred eccCCCCchhhhHH----HHhhccc--c----CCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecC
Q 001538 394 LLPFGGHSSKGLSE----IATFTKL--H----SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 463 (1057)
Q Consensus 394 ~~~~~~~~~~~w~~----~~~~~~~--~----~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~ 463 (1057)
...+.-.|.. +|..... + ...+... -+.+.. .....+.+|++++|+-+.- ..++|+.+.
T Consensus 343 ----~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl----~~k~~~--nIs~~aiSPdg~~Ia~st~-~~~~iy~L~ 411 (691)
T KOG2048|consen 343 ----ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL----FTKEKE--NISCAAISPDGNLIAISTV-SRTKIYRLQ 411 (691)
T ss_pred ----cceEEEEeccccccceeccCcccccccChhhheee----ecCCcc--ceeeeccCCCCCEEEEeec-cceEEEEec
Confidence 0011111210 1111000 0 0000000 011111 1112357899998887643 356777665
Q ss_pred CCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEe-cCccEEEEEecCCCCccceeeeecCCCceEEeccCCc
Q 001538 464 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN-EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 542 (1057)
Q Consensus 464 ~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~-~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g 542 (1057)
.....-.. .+.. +......++.+.|+-|+..+...+ ..+.+.++++.+.... ++..+..
T Consensus 412 ~~~~vk~~----~v~~--~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k-----------el~~~~~--- 471 (691)
T KOG2048|consen 412 PDPNVKVI----NVDD--VPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK-----------ELKSIQS--- 471 (691)
T ss_pred cCcceeEE----Eecc--chhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh-----------hhhcccc---
Confidence 42210000 0110 112234788899999988877776 6677777776654332 1111111
Q ss_pred ceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCC
Q 001538 543 SLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHS 622 (1057)
Q Consensus 543 ~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~ 622 (1057)
......|+.|+.||+|+++|+.+.+|.|.+|++++.+.-+.... ...+||.++|++
T Consensus 472 -------~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r---ln~~vTa~~~~~-------------- 527 (691)
T KOG2048|consen 472 -------QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR---LNIDVTAAAFSP-------------- 527 (691)
T ss_pred -------ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc---cCcceeeeeccc--------------
Confidence 13456899999999999999999999999999998876554422 458899999983
Q ss_pred CCcCCCCCCCcEEEEEecCCeEEEEeCCCcc
Q 001538 623 EREVPVNPAEEVIIVLFKDAKISIVGGSSEN 653 (1057)
Q Consensus 623 ~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~ 653 (1057)
++...|++++.++.|.-+|.+..+
T Consensus 528 -------~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 528 -------FVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred -------cccCcEEEEecCCeEEEEecchhh
Confidence 445669999999999999985433
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.89 E-value=1e-22 Score=217.45 Aligned_cols=283 Identities=17% Similarity=0.258 Sum_probs=206.2
Q ss_pred CCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEE
Q 001538 126 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 205 (1057)
Q Consensus 126 ~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl 205 (1057)
..+|..|.|.| +|.+|++|+..|.+.||+..+ +.|+. .- +.| +..|+++
T Consensus 96 kc~V~~v~WtP--eGRRLltgs~SGEFtLWNg~~----fnFEt--il---QaH--------------------Ds~Vr~m 144 (464)
T KOG0284|consen 96 KCPVNVVRWTP--EGRRLLTGSQSGEFTLWNGTS----FNFET--IL---QAH--------------------DSPVRTM 144 (464)
T ss_pred ccceeeEEEcC--CCceeEeecccccEEEecCce----eeHHH--Hh---hhh--------------------cccceeE
Confidence 56899999999 799999999999999999832 22221 00 223 8899999
Q ss_pred EEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCC
Q 001538 206 CWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 285 (1057)
Q Consensus 206 ~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~ 285 (1057)
.|+ ++|.++++|..+|.|+.|+.+=. . .++ ....+.+.|+.++
T Consensus 145 ~ws-~~g~wmiSgD~gG~iKyWqpnmn------------n-Vk~--~~ahh~eaIRdla--------------------- 187 (464)
T KOG0284|consen 145 KWS-HNGTWMISGDKGGMIKYWQPNMN------------N-VKI--IQAHHAEAIRDLA--------------------- 187 (464)
T ss_pred EEc-cCCCEEEEcCCCceEEecccchh------------h-hHH--hhHhhhhhhheec---------------------
Confidence 999 99999999999999999987421 1 110 1111223344443
Q ss_pred CCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhccc
Q 001538 286 EIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ 365 (1057)
Q Consensus 286 ~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~ 365 (1057)
+.|.++ -++..+++|.|.+|| ...+
T Consensus 188 ----------------------------------------fSpnDs--------kF~t~SdDg~ikiWd-------f~~~ 212 (464)
T KOG0284|consen 188 ----------------------------------------FSPNDS--------KFLTCSDDGTIKIWD-------FRMP 212 (464)
T ss_pred ----------------------------------------cCCCCc--------eeEEecCCCeEEEEe-------ccCC
Confidence 223222 344456678899998 2110
Q ss_pred CCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCC
Q 001538 366 EKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD 445 (1057)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~ 445 (1057)
. .. .. |.|+-+-+.++ +-+|..
T Consensus 213 k--------ee-~v------------------------------------------------L~GHgwdVksv-dWHP~k 234 (464)
T KOG0284|consen 213 K--------EE-RV------------------------------------------------LRGHGWDVKSV-DWHPTK 234 (464)
T ss_pred c--------hh-he------------------------------------------------eccCCCCccee-ccCCcc
Confidence 0 00 00 22222323323 567788
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
.+|++|+.|..|++||..++. .+++ +.+|...|..+.|.|++.+|++++.|..+++||++.-+.
T Consensus 235 gLiasgskDnlVKlWDprSg~--cl~t---------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE----- 298 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGS--CLAT---------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE----- 298 (464)
T ss_pred ceeEEccCCceeEeecCCCcc--hhhh---------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH-----
Confidence 899999999999999999887 2333 336778999999999999999999999999999974322
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC-CCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~-g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl 604 (1057)
+.++++|+..|++++++|- -.+|++|+.||.|..|.+.....+... ..+|...|.+|
T Consensus 299 --------------------l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i--~~AHd~~iwsl 356 (464)
T KOG0284|consen 299 --------------------LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI--PPAHDGEIWSL 356 (464)
T ss_pred --------------------HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC--Ccccccceeee
Confidence 1256789999999999994 458999999999999998744444333 23589999999
Q ss_pred EEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 605 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 605 ~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
+|+ |-|.+|++|++|.++++|..
T Consensus 357 ~~h----------------------PlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 357 AYH----------------------PLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ecc----------------------ccceeEeecCCCcceeeecc
Confidence 999 77999999999999999964
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.89 E-value=1.3e-21 Score=205.55 Aligned_cols=282 Identities=20% Similarity=0.210 Sum_probs=214.1
Q ss_pred CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE
Q 001538 68 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 147 (1057)
Q Consensus 68 ~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~ 147 (1057)
+-|.|++++|...|+++|+.|+++.||++.. ++|. ..+ .+|-..|..++++++ -.+|.+++
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlat--g~Lk---ltl------------tGhi~~vr~vavS~r--HpYlFs~g 212 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLAT--GQLK---LTL------------TGHIETVRGVAVSKR--HPYLFSAG 212 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEccc--CeEE---Eee------------cchhheeeeeeeccc--CceEEEec
Confidence 6799999999999999999999999998765 4443 112 234567999999996 55799999
Q ss_pred CCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEE
Q 001538 148 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 227 (1057)
Q Consensus 148 ~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lW 227 (1057)
+|+.|+.|||..+++++..-+ | -..|.|+..| |.-..|+||+.|.++++|
T Consensus 213 edk~VKCwDLe~nkvIR~YhG---------H--------------------lS~V~~L~lh-PTldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYHG---------H--------------------LSGVYCLDLH-PTLDVLVTGGRDSTIRVW 262 (460)
T ss_pred CCCeeEEEechhhhhHHHhcc---------c--------------------cceeEEEecc-ccceeEEecCCcceEEEe
Confidence 999999999999999876554 3 6789999999 999999999999999999
Q ss_pred eCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccc
Q 001538 228 NTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENL 307 (1057)
Q Consensus 228 d~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~ 307 (1057)
|+.+.. +|..+
T Consensus 263 DiRtr~-------------------------~V~~l-------------------------------------------- 273 (460)
T KOG0285|consen 263 DIRTRA-------------------------SVHVL-------------------------------------------- 273 (460)
T ss_pred eecccc-------------------------eEEEe--------------------------------------------
Confidence 996531 11111
Q ss_pred eeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcc
Q 001538 308 RCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIM 387 (1057)
Q Consensus 308 ~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i 387 (1057)
++|..+|
T Consensus 274 -------------------------------------------------------------------------~GH~~~V 280 (460)
T KOG0285|consen 274 -------------------------------------------------------------------------SGHTNPV 280 (460)
T ss_pred -------------------------------------------------------------------------cCCCCcc
Confidence 0022222
Q ss_pred eEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCce
Q 001538 388 TVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVF 467 (1057)
Q Consensus 388 t~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l 467 (1057)
+.+.+.+ ..-.++||+.|++||+||+..+.
T Consensus 281 ~~V~~~~-------------------------------------------------~dpqvit~S~D~tvrlWDl~agk- 310 (460)
T KOG0285|consen 281 ASVMCQP-------------------------------------------------TDPQVITGSHDSTVRLWDLRAGK- 310 (460)
T ss_pred eeEEeec-------------------------------------------------CCCceEEecCCceEEEeeeccCc-
Confidence 2221110 00147999999999999998886
Q ss_pred eEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeE
Q 001538 468 KLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRA 547 (1057)
Q Consensus 468 ~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~ 547 (1057)
.+.++. .|...|.+++..|.-..+|+++.| .++-|++....+. .
T Consensus 311 -t~~tlt---------~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~-------------------------~ 354 (460)
T KOG0285|consen 311 -TMITLT---------HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFL-------------------------Q 354 (460)
T ss_pred -eeEeee---------cccceeeEEecCCchhhhhccCCc-cceeccCCccchh-------------------------h
Confidence 233332 466789999999999999999988 6899998766542 2
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecC--CC---CCCCeEEEEEeeccCcccccCCCCCC
Q 001538 548 VFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI--SG---SSSPIISMTWTEFKNTHSLAKNPNHS 622 (1057)
Q Consensus 548 ~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~--~g---~~~~V~sl~f~~~~~~~~~~~~~~~~ 622 (1057)
-+++|++-|++|+...|| ++++|+++|.+.+||.+++-.-...+.. .| ....|.+.+|+
T Consensus 355 nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD--------------- 418 (460)
T KOG0285|consen 355 NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD--------------- 418 (460)
T ss_pred ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec---------------
Confidence 367899999999999999 9999999999999999887433222111 11 34568888887
Q ss_pred CCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 623 EREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 623 ~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
..+..|++|..|.+|++|-.
T Consensus 419 -------ktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 419 -------KTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred -------ccCceEEeccCCcceEEEec
Confidence 45777999999999999964
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=2.2e-20 Score=197.63 Aligned_cols=335 Identities=15% Similarity=0.210 Sum_probs=227.4
Q ss_pred CCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCe
Q 001538 123 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 202 (1057)
Q Consensus 123 ~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~V 202 (1057)
..|..+|.+++.+| +.+++++|++|....||++.++.....+.+ | ...|
T Consensus 61 ~~H~~svFavsl~P--~~~l~aTGGgDD~AflW~~~~ge~~~eltg---------H--------------------KDSV 109 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHP--NNNLVATGGGDDLAFLWDISTGEFAGELTG---------H--------------------KDSV 109 (399)
T ss_pred hhcCCceEEEEeCC--CCceEEecCCCceEEEEEccCCcceeEecC---------C--------------------CCce
Confidence 45788999999999 588999999999999999999997766655 3 7789
Q ss_pred EEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEe
Q 001538 203 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVY 282 (1057)
Q Consensus 203 tsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~ 282 (1057)
+++.|+ .||.+||||..+|.|++|...++... .++ . .....|.=+.|. +.+.++.+
T Consensus 110 t~~~Fs-hdgtlLATGdmsG~v~v~~~stg~~~-----------~~~--~--~e~~dieWl~WH--------p~a~illA 165 (399)
T KOG0296|consen 110 TCCSFS-HDGTLLATGDMSGKVLVFKVSTGGEQ-----------WKL--D--QEVEDIEWLKWH--------PRAHILLA 165 (399)
T ss_pred EEEEEc-cCceEEEecCCCccEEEEEcccCceE-----------EEe--e--cccCceEEEEec--------ccccEEEe
Confidence 999999 99999999999999999999887421 111 1 012234445553 25678888
Q ss_pred cCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhh
Q 001538 283 GGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 362 (1057)
Q Consensus 283 gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l 362 (1057)
|..+ ..+.+|.++-.. .| ++--.++.++..=.++|++ -.++....+|.|++||..+..
T Consensus 166 G~~D----GsvWmw~ip~~~-----~~--kv~~Gh~~~ct~G~f~pdG--------Kr~~tgy~dgti~~Wn~ktg~--- 223 (399)
T KOG0296|consen 166 GSTD----GSVWMWQIPSQA-----LC--KVMSGHNSPCTCGEFIPDG--------KRILTGYDDGTIIVWNPKTGQ--- 223 (399)
T ss_pred ecCC----CcEEEEECCCcc-----ee--eEecCCCCCcccccccCCC--------ceEEEEecCceEEEEecCCCc---
Confidence 8877 345555543211 11 1111123334333444543 267788889999999832110
Q ss_pred cccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccC
Q 001538 363 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCH 442 (1057)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~ 442 (1057)
++ | ...... +.. ++ .....
T Consensus 224 ------------p~------~----------~~~~~e----------------~~~---------~~--------~~~~~ 242 (399)
T KOG0296|consen 224 ------------PL------H----------KITQAE----------------GLE---------LP--------CISLN 242 (399)
T ss_pred ------------ee------E----------Eecccc----------------cCc---------CC--------ccccc
Confidence 00 0 000000 000 00 00244
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCC---CEEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001538 443 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA---PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~---~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
..+..+++|+.++.+.+-+..++.. +...++.+-.+ ..++.. .|.++.||..=.+.|+|+.||+|.|||+....
T Consensus 243 ~~~~~~~~g~~e~~~~~~~~~sgKV--v~~~n~~~~~l-~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 243 LAGSTLTKGNSEGVACGVNNGSGKV--VNCNNGTVPEL-KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred cccceeEeccCCccEEEEccccceE--EEecCCCCccc-cccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 4556788888888888877776652 22222111000 012223 44445555555577999999999999997654
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCC
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 599 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~ 599 (1057)
.. ..-.|..+|+.|.|-+ ..+|++++.+|.|+.||.++|.+++.+. ||..
T Consensus 320 ~R--------------------------~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~~ 369 (399)
T KOG0296|consen 320 LR--------------------------HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQM 369 (399)
T ss_pred hh--------------------------eeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe---cCch
Confidence 32 1224888999999999 6699999999999999999999999876 4999
Q ss_pred CeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 600 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 600 ~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
+|..++++ |+++.+++++.|++.+|++..
T Consensus 370 ~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 370 GILDFALS----------------------PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeEEEEc----------------------CCCcEEEEecCCCeEEEEecC
Confidence 99999988 889999999999999999764
No 43
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-18 Score=195.53 Aligned_cols=475 Identities=13% Similarity=0.169 Sum_probs=277.4
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeee---cCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl---~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
..+|.+|+|+...+.|+.+-++|.|++||+...-.+... ..++.|.+++|.+ +..|++.+.+| .|..||...++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg--~i~EwDl~~lk 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSG--SITEWDLHTLK 101 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCc--eEEEEecccCc
Confidence 467999999999989999999999999999987654333 2347899999995 45566777888 56666665543
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
.. |.+.. ..++|++|+.+| .++.+++|++||.+.+++...+++...... +
T Consensus 102 ~~---~~~d~------------~gg~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r~l-~------------ 151 (691)
T KOG2048|consen 102 QK---YNIDS------------NGGAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKRSL-M------------ 151 (691)
T ss_pred ee---EEecC------------CCcceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEeec-c------------
Confidence 32 43331 256899999999 678899999999887778877777654332 0
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEE
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 262 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~ 262 (1057)
..+++|.++.|+ |+|.+|++|+.||.|++||+.++... -+..+++.....+.+ .
T Consensus 152 --------------rq~sRvLslsw~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~---------~~~~~~~d~l~k~~~--~ 205 (691)
T KOG2048|consen 152 --------------RQKSRVLSLSWN-PTGTKIAGGSIDGVIRIWDVKSGQTL---------HIITMQLDRLSKREP--T 205 (691)
T ss_pred --------------cccceEEEEEec-CCccEEEecccCceEEEEEcCCCceE---------EEeeecccccccCCc--e
Confidence 016899999999 99999999999999999999887532 122223333323233 3
Q ss_pred EEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEE
Q 001538 263 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 342 (1057)
Q Consensus 263 l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv 342 (1057)
+.|+... - ....+++|-+. ..+++|+...-.-.+..+ .+++.+..+..-+.. ..++
T Consensus 206 iVWSv~~---L--rd~tI~sgDS~----G~V~FWd~~~gTLiqS~~-------~h~adVl~Lav~~~~--------d~vf 261 (691)
T KOG2048|consen 206 IVWSVLF---L--RDSTIASGDSA----GTVTFWDSIFGTLIQSHS-------CHDADVLALAVADNE--------DRVF 261 (691)
T ss_pred EEEEEEE---e--ecCcEEEecCC----ceEEEEcccCcchhhhhh-------hhhcceeEEEEcCCC--------CeEE
Confidence 4465421 1 22356665544 567776643221111111 122333333332222 3677
Q ss_pred EEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEe-----ccCCCCchhhhHHHHhhccccCC
Q 001538 343 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFML-----LPFGGHSSKGLSEIATFTKLHSS 417 (1057)
Q Consensus 343 ~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~-----~~~~~~~~~~w~~~~~~~~~~~~ 417 (1057)
..+-++++..|... ..+. .|.. ..+..+ |...|.+++++. .+++..+.- ...+.. .
T Consensus 262 saGvd~~ii~~~~~--------~~~~-~wv~-~~~r~~--h~hdvrs~av~~~~l~sgG~d~~l~i-----~~s~~~-~- 322 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLT--------TNKS-EWVI-NSRRDL--HAHDVRSMAVIENALISGGRDFTLAI-----CSSREF-K- 322 (691)
T ss_pred EccCCCceEEEEec--------CCcc-ceee-eccccC--CcccceeeeeecceEEecceeeEEEE-----cccccc-C-
Confidence 77777787776411 1100 0110 111112 333455555432 222111000 000000 0
Q ss_pred CCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecC
Q 001538 418 HTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI 497 (1057)
Q Consensus 418 ~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd 497 (1057)
. +... ...-.+. .+.....+..++++. -.+..+.+|.+.+..++.-+- ...+..+.+.+++ -|+|.+.||+
T Consensus 323 -~-~~h~---~~~~~p~-~~~v~~a~~~~L~~~-w~~h~v~lwrlGS~~~~g~~~-~~~Llkl~~k~~~-nIs~~aiSPd 393 (691)
T KOG2048|consen 323 -N-MDHR---QKNLFPA-SDRVSVAPENRLLVL-WKAHGVDLWRLGSVILQGEYN-YIHLLKLFTKEKE-NISCAAISPD 393 (691)
T ss_pred -c-hhhh---ccccccc-cceeecCccceEEEE-eccccccceeccCcccccccC-hhhheeeecCCcc-ceeeeccCCC
Confidence 0 0000 0000000 001112333333333 234556677666552210000 0012223344443 6999999999
Q ss_pred CCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEe-CCce
Q 001538 498 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF-ECGR 576 (1057)
Q Consensus 498 ~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~-~dG~ 576 (1057)
++++|.+.- .+++||++....... +..+. ........++.+.|+-++..+...+ .+..
T Consensus 394 g~~Ia~st~-~~~~iy~L~~~~~vk-----------~~~v~---------~~~~~~~~a~~i~ftid~~k~~~~s~~~~~ 452 (691)
T KOG2048|consen 394 GNLIAISTV-SRTKIYRLQPDPNVK-----------VINVD---------DVPLALLDASAISFTIDKNKLFLVSKNIFS 452 (691)
T ss_pred CCEEEEeec-cceEEEEeccCccee-----------EEEec---------cchhhhccceeeEEEecCceEEEEecccce
Confidence 999999875 478999997654210 11110 1112334678889998888877777 8888
Q ss_pred EEEEeCCCCeEEEEeecCC-CCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcce
Q 001538 577 VAVLDMNLLSVLFFTDDIS-GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 654 (1057)
Q Consensus 577 V~vwDi~~~~~l~~~~~~~-g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~ 654 (1057)
+.++++.++.-.+.....+ +-..+|..|.-+ ++|++|++.+.+|.|.+|++++++.
T Consensus 453 le~~el~~ps~kel~~~~~~~~~~~I~~l~~S----------------------sdG~yiaa~~t~g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 453 LEEFELETPSFKELKSIQSQAKCPSISRLVVS----------------------SDGNYIAAISTRGQIFVYNLETLES 509 (691)
T ss_pred eEEEEecCcchhhhhccccccCCCcceeEEEc----------------------CCCCEEEEEeccceEEEEEccccee
Confidence 9999988775443332211 133567777666 8999999999999999999998664
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.89 E-value=4.9e-21 Score=201.25 Aligned_cols=158 Identities=13% Similarity=0.267 Sum_probs=135.7
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceec
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 105 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~ 105 (1057)
.-|++++|-|...++++++.|++|+|||+.+|++..++. +-..+..+++++...||+.+.+|+.|+.|++. .+++..
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe--~nkvIR 229 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE--YNKVIR 229 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech--hhhhHH
Confidence 459999999999999999999999999999999999997 44788999999999999999999987777653 333331
Q ss_pred cCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCC
Q 001538 106 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 185 (1057)
Q Consensus 106 ~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 185 (1057)
.| -+|.+.|.|+..||.+ .+|+++++|.++++||+++...++++.+ |
T Consensus 230 -~Y--------------hGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~G---------H------- 276 (460)
T KOG0285|consen 230 -HY--------------HGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSG---------H------- 276 (460)
T ss_pred -Hh--------------ccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecC---------C-------
Confidence 12 2357889999999963 4699999999999999999999999887 4
Q ss_pred CCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 186 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 186 ~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
..+|.++.+. |-.-.|+||+.|++|++||+..+.
T Consensus 277 -------------~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 277 -------------TNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGK 310 (460)
T ss_pred -------------CCcceeEEee-cCCCceEEecCCceEEEeeeccCc
Confidence 7899999999 666679999999999999997764
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=9.6e-21 Score=224.05 Aligned_cols=167 Identities=20% Similarity=0.344 Sum_probs=140.2
Q ss_pred EEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCc--eeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEE
Q 001538 18 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCLK-WESNITAFSVISGSHFMYIGDENGLMSVI 94 (1057)
Q Consensus 18 e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~--~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~ 94 (1057)
+..+.......|.++.|+++|.+|++++.++.+++|+....+ ++..+. +...|..++|+|++.+++.|+.|++++||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 334444445679999999999999999999999999998777 666663 44689999999999999999999999888
Q ss_pred EEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCccccc
Q 001538 95 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLK 174 (1057)
Q Consensus 95 ~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~ 174 (1057)
.. .+++... . .-++|...|.+++|+| +|+++++|+.|++|+|||+++++++..+..
T Consensus 231 d~-~~~~~~~---~------------~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~------ 286 (456)
T KOG0266|consen 231 DL-KDDGRNL---K------------TLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKG------ 286 (456)
T ss_pred ec-cCCCeEE---E------------EecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeec------
Confidence 87 2322222 1 1235778999999999 578999999999999999999999988876
Q ss_pred CCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 175 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
| ...|++++|+ +||+.|++++.||.|++||+.++
T Consensus 287 ---h--------------------s~~is~~~f~-~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 287 ---H--------------------SDGISGLAFS-PDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred ---c--------------------CCceEEEEEC-CCCCEEEEcCCCccEEEEECCCC
Confidence 3 7799999999 99999999999999999999654
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=3e-20 Score=192.09 Aligned_cols=286 Identities=18% Similarity=0.217 Sum_probs=202.5
Q ss_pred CCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCe-EEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCC
Q 001538 123 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 201 (1057)
Q Consensus 123 ~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 201 (1057)
.+|.+.|..+.|+| +|+.+++|+.|..|.||++-... -..+..+ | .+.
T Consensus 44 ~gh~geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg---------H--------------------sgA 92 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGDCENFWVLKG---------H--------------------SGA 92 (338)
T ss_pred CCCcceEEEEEECC--CCCeEeecCCcceEEEEeccccccceeeecc---------c--------------------cce
Confidence 45688999999999 69999999999999999975332 1222222 3 889
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEE
Q 001538 202 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFV 281 (1057)
Q Consensus 202 Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv 281 (1057)
|..+.|. +|+++|++++.|.+|+.||+.+|.. +.|... |..-|..+. . ...+..|
T Consensus 93 VM~l~~~-~d~s~i~S~gtDk~v~~wD~~tG~~-----------~rk~k~----h~~~vNs~~--p-----~rrg~~l-- 147 (338)
T KOG0265|consen 93 VMELHGM-RDGSHILSCGTDKTVRGWDAETGKR-----------IRKHKG----HTSFVNSLD--P-----SRRGPQL-- 147 (338)
T ss_pred eEeeeec-cCCCEEEEecCCceEEEEeccccee-----------eehhcc----ccceeeecC--c-----cccCCeE--
Confidence 9999999 9999999999999999999998852 222111 111122220 0 0001111
Q ss_pred ecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhh
Q 001538 282 YGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTL 361 (1057)
Q Consensus 282 ~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~ 361 (1057)
+.....+|++.+||
T Consensus 148 -----------------------------------------------------------v~SgsdD~t~kl~D------- 161 (338)
T KOG0265|consen 148 -----------------------------------------------------------VCSGSDDGTLKLWD------- 161 (338)
T ss_pred -----------------------------------------------------------EEecCCCceEEEEe-------
Confidence 22223467888888
Q ss_pred hcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCcccc
Q 001538 362 LSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKC 441 (1057)
Q Consensus 362 l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~ 441 (1057)
+...+ +.....-.-.+|.+. +
T Consensus 162 ~R~k~----------~~~t~~~kyqltAv~-------------------------------------------------f 182 (338)
T KOG0265|consen 162 IRKKE----------AIKTFENKYQLTAVG-------------------------------------------------F 182 (338)
T ss_pred ecccc----------hhhccccceeEEEEE-------------------------------------------------e
Confidence 22110 000000001122222 2
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCc
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 521 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~ 521 (1057)
...+..+++|+-|+.|++||+.... .++++. ||..+|+.++.+++|.++.+-+.|.+|++||++.-..
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d--~~~~ls---------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p- 250 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKND--GLYTLS---------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP- 250 (338)
T ss_pred cccccceeeccccCceeeeccccCc--ceEEee---------cccCceeeEEeccCCCccccccccceEEEEEecccCC-
Confidence 2233357899999999999998776 345544 8888999999999999999999999999999976422
Q ss_pred cceeeeecCCCceEEeccCCcceeeEEEeeC--CCCe--EEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCC
Q 001538 522 KNFLFVLETKSEVHALPEGKISLCRAVFSLV--NSPV--RALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 597 (1057)
Q Consensus 522 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h--~~~I--tsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~ 597 (1057)
+..|+.++.+| .-.+ ...+|||++.++..|+.|..|.|||.....++|.+ +||
T Consensus 251 --------------------~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl---pGh 307 (338)
T KOG0265|consen 251 --------------------SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL---PGH 307 (338)
T ss_pred --------------------CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc---CCc
Confidence 22334556554 3333 45689999999999999999999999998999875 569
Q ss_pred CCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEE
Q 001538 598 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISI 646 (1057)
Q Consensus 598 ~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v 646 (1057)
...|..++|+ |...+|.+++.|.+|.+
T Consensus 308 ~gsvn~~~Fh----------------------p~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 308 YGSVNEVDFH----------------------PTEPIILSCSSDKTIYL 334 (338)
T ss_pred ceeEEEeeec----------------------CCCcEEEEeccCceeEe
Confidence 9999999999 77889999999998876
No 47
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3e-21 Score=203.84 Aligned_cols=284 Identities=15% Similarity=0.211 Sum_probs=208.5
Q ss_pred CCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeE
Q 001538 124 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 203 (1057)
Q Consensus 124 ~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vt 203 (1057)
.+..+|+.+-||| +-..++++++|++|++||..++++...+.+ | ...|.
T Consensus 106 g~r~~vt~v~~hp--~~~~v~~as~d~tikv~D~~tg~~e~~LrG---------H--------------------t~sv~ 154 (406)
T KOG0295|consen 106 GHRSSVTRVIFHP--SEALVVSASEDATIKVFDTETGELERSLRG---------H--------------------TDSVF 154 (406)
T ss_pred ccccceeeeeecc--CceEEEEecCCceEEEEEccchhhhhhhhc---------c--------------------cccee
Confidence 3578999999999 455688888999999999999999777666 3 66799
Q ss_pred EEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEec
Q 001538 204 ALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYG 283 (1057)
Q Consensus 204 sl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~g 283 (1057)
.+.|+ ..|+++++.+.|=.+.+||....... + |.. ..+..-|.++
T Consensus 155 di~~~-a~Gk~l~tcSsDl~~~LWd~~~~~~c----------~-ks~---~gh~h~vS~V-------------------- 199 (406)
T KOG0295|consen 155 DISFD-ASGKYLATCSSDLSAKLWDFDTFFRC----------I-KSL---IGHEHGVSSV-------------------- 199 (406)
T ss_pred EEEEe-cCccEEEecCCccchhheeHHHHHHH----------H-HHh---cCcccceeeE--------------------
Confidence 99999 99999999999999999998552100 0 000 0011111111
Q ss_pred CCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhc
Q 001538 284 GDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLS 363 (1057)
Q Consensus 284 g~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~ 363 (1057)
.++|.+ ..++..+.+..+..||-...++...
T Consensus 200 -----------------------------------------~f~P~g--------d~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 200 -----------------------------------------FFLPLG--------DHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred -----------------------------------------EEEecC--------CeeeecccccceeEEecccceeEEe
Confidence 111111 1344445566777777332222111
Q ss_pred ccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCC
Q 001538 364 QQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHS 443 (1057)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~ 443 (1057)
++.|. -|.+ .+ +...
T Consensus 231 ----------------~~~h~-------------------ewvr-----------------------------~v-~v~~ 245 (406)
T KOG0295|consen 231 ----------------FPGHS-------------------EWVR-----------------------------MV-RVNQ 245 (406)
T ss_pred ----------------ccCch-------------------HhEE-----------------------------EE-EecC
Confidence 10010 1311 01 4667
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCC---------------CeEEEEecCc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN---------------SSLAVGNEFG 508 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~---------------~~Lavg~~dG 508 (1057)
++.++++|+.|.+||+|-..++.-.. .+.+|..+|.+++|.|+. +.|.+|+.|+
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~-----------~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKA-----------ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhh-----------hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 88899999999999999887764111 234677899999998764 4799999999
Q ss_pred cEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEE
Q 001538 509 LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 588 (1057)
Q Consensus 509 ~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l 588 (1057)
++++|++.+. +|+..+.+|...|..++|+|-|+||+++.+|++|+|||+++++++
T Consensus 315 tIk~wdv~tg-------------------------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 315 TIKIWDVSTG-------------------------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred eEEEEeccCC-------------------------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 9999998654 355688899999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 589 FFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 589 ~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
.+... |.--|+++.|. -+..++++|+-|.++++|.
T Consensus 370 k~~~a---h~hfvt~lDfh----------------------~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 370 KTLEA---HEHFVTSLDFH----------------------KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eccCC---CcceeEEEecC----------------------CCCceEEeccccceeeeee
Confidence 88765 88899999998 3345899999999999995
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=213.28 Aligned_cols=294 Identities=18% Similarity=0.226 Sum_probs=219.5
Q ss_pred ceeeeecC-CCCEEEEEEec-CCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCc
Q 001538 59 SLACCLKW-ESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 136 (1057)
Q Consensus 59 ~~l~tl~~-~~~Ita~~~sp-~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP 136 (1057)
++.+++.. ...|+++-+.| .+.+++.|+.||.|.||++-.+++++. .| .+|..+|..+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr--tf--------------~gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR--TF--------------KGHRKPVRDASFNN 268 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh--hh--------------hcchhhhhhhhccc
Confidence 34555543 35799999999 888999999999999999755555544 23 23567899999999
Q ss_pred CCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCC-CEE
Q 001538 137 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SIL 215 (1057)
Q Consensus 137 ~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG-~~l 215 (1057)
+|..+|+++-|+.++|||+.+|+++..|.. ...++|+.|+ ||+ +.+
T Consensus 269 --~g~~fLS~sfD~~lKlwDtETG~~~~~f~~------------------------------~~~~~cvkf~-pd~~n~f 315 (503)
T KOG0282|consen 269 --CGTSFLSASFDRFLKLWDTETGQVLSRFHL------------------------------DKVPTCVKFH-PDNQNIF 315 (503)
T ss_pred --cCCeeeeeecceeeeeeccccceEEEEEec------------------------------CCCceeeecC-CCCCcEE
Confidence 699999999999999999999999998875 5678999999 888 889
Q ss_pred EEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEE
Q 001538 216 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 295 (1057)
Q Consensus 216 atg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltv 295 (1057)
++|..|+.|+.||++++. ++. .+..
T Consensus 316 l~G~sd~ki~~wDiRs~k------------vvq---eYd~---------------------------------------- 340 (503)
T KOG0282|consen 316 LVGGSDKKIRQWDIRSGK------------VVQ---EYDR---------------------------------------- 340 (503)
T ss_pred EEecCCCcEEEEeccchH------------HHH---HHHh----------------------------------------
Confidence 999999999999997652 110 0000
Q ss_pred EEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcc
Q 001538 296 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVE 375 (1057)
Q Consensus 296 l~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~ 375 (1057)
T Consensus 341 -------------------------------------------------------------------------------- 340 (503)
T KOG0282|consen 341 -------------------------------------------------------------------------------- 340 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCC
Q 001538 376 FPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 455 (1057)
Q Consensus 376 ~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DG 455 (1057)
|-..|..+. |-+.++..|+.+.|+
T Consensus 341 -------hLg~i~~i~-------------------------------------------------F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 341 -------HLGAILDIT-------------------------------------------------FVDEGRRFISSSDDK 364 (503)
T ss_pred -------hhhheeeeE-------------------------------------------------EccCCceEeeeccCc
Confidence 000010111 223334678889999
Q ss_pred cEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceE
Q 001538 456 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVH 535 (1057)
Q Consensus 456 tVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~ 535 (1057)
+||||+...+..... .. + .+....-+|..+|++.+++.-+.|..+.+|.....-.. +
T Consensus 365 s~riWe~~~~v~ik~-i~-------~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-n------------ 421 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKN-IA-------D--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL-N------------ 421 (503)
T ss_pred cEEEEEcCCCccchh-hc-------c--hhhccCcceecCCCCCeehhhccCceEEEEeccccccc-C------------
Confidence 999999987763110 01 1 12236778999999999999999999999985321110 0
Q ss_pred EeccCCcceeeEEEeeCC--CCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcc
Q 001538 536 ALPEGKISLCRAVFSLVN--SPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTH 613 (1057)
Q Consensus 536 ~i~~~~g~~~~~~~~~h~--~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~ 613 (1057)
. ...+.+|. +--+.+.|||||++|++|+.||.|.+||.++-+++..+.. |..+++.+.|++..
T Consensus 422 ---k------kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka---h~~~ci~v~wHP~e--- 486 (503)
T KOG0282|consen 422 ---K------KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA---HDQPCIGVDWHPVE--- 486 (503)
T ss_pred ---H------hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc---CCcceEEEEecCCC---
Confidence 0 11344553 4457789999999999999999999999999888877665 99999999999532
Q ss_pred cccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 614 SLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 614 ~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
...+++++-||.|++||
T Consensus 487 ------------------~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 ------------------PSKVATCGWDGLIKIWD 503 (503)
T ss_pred ------------------cceeEecccCceeEecC
Confidence 34589999999999996
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.7e-20 Score=187.07 Aligned_cols=289 Identities=15% Similarity=0.229 Sum_probs=202.2
Q ss_pred CCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCe---EEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCC
Q 001538 124 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 200 (1057)
Q Consensus 124 ~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 200 (1057)
.|...|..++|||. .|..|++++.|..|++|+..++. ++.++.. .++.
T Consensus 12 gh~~r~W~~awhp~-~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~----------------------------~hkr 62 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPG-KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD----------------------------GHKR 62 (312)
T ss_pred CCCCcEEEEEeccC-CceEEEeecCCceEEEEecCCCCcEEEEEeccc----------------------------cchh
Confidence 45668999999995 37789999999999999998532 3333321 2388
Q ss_pred CeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEE
Q 001538 201 EISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLF 280 (1057)
Q Consensus 201 ~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Ll 280 (1057)
.|.+++|+ |.|++|++|+-|.++.||.-.+++-. + +.. ...|...|.+++|++ +|.+|
T Consensus 63 sVRsvAws-p~g~~La~aSFD~t~~Iw~k~~~efe-------c--v~~----lEGHEnEVK~Vaws~--------sG~~L 120 (312)
T KOG0645|consen 63 SVRSVAWS-PHGRYLASASFDATVVIWKKEDGEFE-------C--VAT----LEGHENEVKCVAWSA--------SGNYL 120 (312)
T ss_pred eeeeeeec-CCCcEEEEeeccceEEEeecCCCcee-------E--Eee----eeccccceeEEEEcC--------CCCEE
Confidence 99999999 99999999999999999987655321 1 111 122556789999976 56778
Q ss_pred EecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhh
Q 001538 281 VYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTT 360 (1057)
Q Consensus 281 v~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~ 360 (1057)
++.+.+ ..+-+|..+. ++++
T Consensus 121 ATCSRD----KSVWiWe~de----------------------------------------------ddEf---------- 140 (312)
T KOG0645|consen 121 ATCSRD----KSVWIWEIDE----------------------------------------------DDEF---------- 140 (312)
T ss_pred EEeeCC----CeEEEEEecC----------------------------------------------CCcE----------
Confidence 877776 3333332110 0111
Q ss_pred hhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccc
Q 001538 361 LLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITK 440 (1057)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~ 440 (1057)
-|.+..... ..-++.. .
T Consensus 141 ---------------------------ec~aVL~~H-----------------------------------tqDVK~V-~ 157 (312)
T KOG0645|consen 141 ---------------------------ECIAVLQEH-----------------------------------TQDVKHV-I 157 (312)
T ss_pred ---------------------------EEEeeeccc-----------------------------------cccccEE-E
Confidence 111110000 0000001 3
Q ss_pred cCCCCcEEEEEeCCCcEEEEecC-CCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~-~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
.+|...+|++++.|.+||+|+-. ........+ +.+|..-|.+++|++.|..|++++.|++|+||.....
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t---------l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~- 227 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT---------LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD- 227 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCCeeEEEE---------ecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-
Confidence 67777799999999999999876 433323333 4478789999999999999999999999999986421
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCC----Ce--EEEEeec
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL----LS--VLFFTDD 593 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~----~~--~l~~~~~ 593 (1057)
.-..|++++..+++. +| .+|+|+.|+.|+|+-... +. ++...
T Consensus 228 ----------------------------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-- 275 (312)
T KOG0645|consen 228 ----------------------------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKK-- 275 (312)
T ss_pred ----------------------------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhh--
Confidence 122488999999999 66 899999999999997653 21 11111
Q ss_pred CCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCC-CCcEEEEEecCCeEEEEeCC
Q 001538 594 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNP-AEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 594 ~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~-d~~~L~sgt~dg~i~v~d~~ 650 (1057)
...|...|.+++|. | .+..|++|+.||.|.+|.++
T Consensus 276 ~~aHe~dVNsV~w~----------------------p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 276 EGAHEVDVNSVQWN----------------------PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hcccccccceEEEc----------------------CCCCCceeecCCCceEEEEEec
Confidence 12388899999998 4 26789999999999999653
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.5e-19 Score=199.96 Aligned_cols=282 Identities=12% Similarity=0.201 Sum_probs=216.7
Q ss_pred CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEE
Q 001538 66 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 145 (1057)
Q Consensus 66 ~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli 145 (1057)
...+|.++.+.|.-.|++.+.-+|+|.||+|+... ++ ..+.+. ..||.+..|-+| -+.+++
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--mV-ksfeV~--------------~~PvRa~kfiaR--knWiv~ 72 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--MV-KSFEVS--------------EVPVRAAKFIAR--KNWIVT 72 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccce--ee-eeeeec--------------ccchhhheeeec--cceEEE
Confidence 45689999999999999999999999999998753 32 123332 347888889887 458999
Q ss_pred EECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEE
Q 001538 146 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 225 (1057)
Q Consensus 146 ~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~ 225 (1057)
|++|..|++|+..+++-++.|.. | ...|.|++.| |.--+++|+++|-+|+
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeA---------H--------------------~DyIR~iavH-Pt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEA---------H--------------------SDYIRSIAVH-PTLPYVLTSSDDMTIK 122 (794)
T ss_pred ecCCceEEEEecccceeeEEeec---------c--------------------ccceeeeeec-CCCCeEEecCCccEEE
Confidence 99999999999999999999876 4 7789999999 9999999999999999
Q ss_pred EEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccc
Q 001538 226 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 305 (1057)
Q Consensus 226 lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~ 305 (1057)
+||-... |.|.+ . .-|
T Consensus 123 lW~we~~--------------------------------wa~~q---------t--feG--------------------- 138 (794)
T KOG0276|consen 123 LWDWENE--------------------------------WACEQ---------T--FEG--------------------- 138 (794)
T ss_pred EeeccCc--------------------------------eeeee---------E--EcC---------------------
Confidence 9997432 33310 0 000
Q ss_pred cceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCC
Q 001538 306 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 385 (1057)
Q Consensus 306 ~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 385 (1057)
|.-
T Consensus 139 -----------------------------------------------------------------------------H~H 141 (794)
T KOG0276|consen 139 -----------------------------------------------------------------------------HEH 141 (794)
T ss_pred -----------------------------------------------------------------------------cce
Confidence 111
Q ss_pred cceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCC
Q 001538 386 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 465 (1057)
Q Consensus 386 ~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~ 465 (1057)
.|-+++| ...+.+.+++++-|+||++|.+..+
T Consensus 142 yVMqv~f------------------------------------------------nPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 142 YVMQVAF------------------------------------------------NPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred EEEEEEe------------------------------------------------cCCCccceeeeeccccEEEEEcCCC
Confidence 1112222 1123346799999999999999877
Q ss_pred ceeEEeecccceeeeeecCCCCCEEEEEEecCC--CeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcc
Q 001538 466 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN--SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 543 (1057)
Q Consensus 466 ~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~--~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~ 543 (1057)
. +.+++ .+|..-|+||.|-+.+ .+|++|+.|-+|+|||+++.
T Consensus 174 ~--~nfTl---------~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk------------------------- 217 (794)
T KOG0276|consen 174 H--PNFTL---------EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK------------------------- 217 (794)
T ss_pred C--Cceee---------eccccCcceEEeccCCCcceEEecCCCceEEEeecchH-------------------------
Confidence 6 23333 4888899999998744 59999999999999998764
Q ss_pred eeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCC
Q 001538 544 LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSE 623 (1057)
Q Consensus 544 ~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~ 623 (1057)
.|+.++.+|...|+++.|.|.=..+++|++||+|+||+-.+-++..++.. .-..|.+++-.
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~---gleRvW~I~~~---------------- 278 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY---GLERVWCIAAH---------------- 278 (794)
T ss_pred HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc---CCceEEEEeec----------------
Confidence 34568889999999999999999999999999999999988776555443 34678888765
Q ss_pred CcCCCCCCCcEEEEEecCCeEEE
Q 001538 624 REVPVNPAEEVIIVLFKDAKISI 646 (1057)
Q Consensus 624 ~~~~~~~d~~~L~sgt~dg~i~v 646 (1057)
+.+..+++|.+.|.|.+
T Consensus 279 ------k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 279 ------KGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ------CCCCeEEEeccCCcEEE
Confidence 44555777777776655
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.8e-19 Score=179.76 Aligned_cols=159 Identities=15% Similarity=0.229 Sum_probs=126.5
Q ss_pred CCCCeeEEEEEcC-CcEEEEEeCCCcEEEEECCCCc---eeeeec--CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeC
Q 001538 25 SQLPYKNLEFLQN-QGFLISITNDNEIQVWSLESRS---LACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDA 98 (1057)
Q Consensus 25 ~~~~v~~L~F~~~-~~~Lvs~s~d~~I~VWdl~s~~---~l~tl~--~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~ 98 (1057)
+...+..++|.|. |..|++++.|..|++|++.++. +.+.+. +...|..++++|.++||++|+.|.++.||.=..
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 4567999999999 6679999999999999998533 333342 447899999999999999999999988887322
Q ss_pred CCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCC---eEEEEecCCcccccC
Q 001538 99 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA---QIIFVGGGKDLQLKD 175 (1057)
Q Consensus 99 ~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~---~~~~~~~~~~~~~~~ 175 (1057)
+. |.... ...+|...|-|++|++ +|++|++.++|..|-+|.+.++ +++.++..
T Consensus 93 --~e-----fecv~--------~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~------- 148 (312)
T KOG0645|consen 93 --GE-----FECVA--------TLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE------- 148 (312)
T ss_pred --Cc-----eeEEe--------eeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc-------
Confidence 22 22111 2245778999999999 7999999999999999999865 34444443
Q ss_pred CccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 176 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 176 ~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
| ...|..+.|| |.-..|++++-|++|++|+-.
T Consensus 149 --H--------------------tqDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 149 --H--------------------TQDVKHVIWH-PTEDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred --c--------------------cccccEEEEc-CCcceeEEeccCCeEEEEeec
Confidence 3 7789999999 988899999999999999763
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=5.7e-21 Score=204.60 Aligned_cols=285 Identities=15% Similarity=0.203 Sum_probs=214.9
Q ss_pred CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEE
Q 001538 66 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 145 (1057)
Q Consensus 66 ~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli 145 (1057)
+++.+..+.|-+..+.+++|..|..|.+|+...+.- +.++...+..++|.++.|.+ ++.+++.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------~~~~tLaGs~g~it~~d~d~--~~~~~iA 236 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------ELISTLAGSLGNITSIDFDS--DNKHVIA 236 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------hhhhhhhccCCCcceeeecC--CCceEEe
Confidence 457889999999999999999999999998765431 11122234567899999999 6888999
Q ss_pred EECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEE
Q 001538 146 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 225 (1057)
Q Consensus 146 ~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~ 225 (1057)
++.|+.+++|++.+.++.+++.+ | ..+|+++.|. .....+++|+.|.+|+
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsG---------H--------------------tdkVt~ak~~-~~~~~vVsgs~DRtiK 286 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSG---------H--------------------TDKVTAAKFK-LSHSRVVSGSADRTIK 286 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcc---------c--------------------ccceeeehhh-ccccceeeccccchhh
Confidence 99999999999999999888877 4 8899999998 6666699999999999
Q ss_pred EEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccc
Q 001538 226 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 305 (1057)
Q Consensus 226 lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~ 305 (1057)
+||+.... +. .+ ++ .+.
T Consensus 287 ~WDl~k~~----------------------------C~------------kt-~l-~~S--------------------- 303 (459)
T KOG0288|consen 287 LWDLQKAY----------------------------CS------------KT-VL-PGS--------------------- 303 (459)
T ss_pred hhhhhhhh----------------------------ee------------cc-cc-ccc---------------------
Confidence 99994320 00 00 00 000
Q ss_pred cceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCC
Q 001538 306 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 385 (1057)
Q Consensus 306 ~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 385 (1057)
....|++
T Consensus 304 ----------------------------------------~cnDI~~--------------------------------- 310 (459)
T KOG0288|consen 304 ----------------------------------------QCNDIVC--------------------------------- 310 (459)
T ss_pred ----------------------------------------cccceEe---------------------------------
Confidence 0000000
Q ss_pred cceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCC
Q 001538 386 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 465 (1057)
Q Consensus 386 ~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~ 465 (1057)
....+++||.|++||+||..++
T Consensus 311 ----------------------------------------------------------~~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 311 ----------------------------------------------------------SISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred ----------------------------------------------------------cceeeeecccccceEEEeccCC
Confidence 0114789999999999999887
Q ss_pred ceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCccee
Q 001538 466 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 545 (1057)
Q Consensus 466 ~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 545 (1057)
... ..+.+. +.|+++..++++..|.+.+.|.++.+.|+++......+ ...||.
T Consensus 333 ~~~---------~sv~~g---g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~--------------sA~g~k- 385 (459)
T KOG0288|consen 333 DKT---------RSVPLG---GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF--------------SAEGFK- 385 (459)
T ss_pred cee---------eEeecC---cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe--------------eccccc-
Confidence 621 112222 38999999999999999999999999999875432111 112222
Q ss_pred eEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCc
Q 001538 546 RAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSERE 625 (1057)
Q Consensus 546 ~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~ 625 (1057)
.+| ..+.+.|||++.|+|+|+.||.|+||++.++++.+.... ++....|++++|+
T Consensus 386 ----~as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~~aI~s~~W~------------------ 440 (459)
T KOG0288|consen 386 ----CAS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSNAAITSLSWN------------------ 440 (459)
T ss_pred ----ccc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CCCCcceEEEEEc------------------
Confidence 123 389999999999999999999999999999999877654 2233369999998
Q ss_pred CCCCCCCcEEEEEecCCeEEEE
Q 001538 626 VPVNPAEEVIIVLFKDAKISIV 647 (1057)
Q Consensus 626 ~~~~~d~~~L~sgt~dg~i~v~ 647 (1057)
|.|..|+++++++.+.+|
T Consensus 441 ----~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 ----PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ----CCCchhhcccCCcceEec
Confidence 778889999999999999
No 53
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=1.7e-17 Score=181.65 Aligned_cols=379 Identities=15% Similarity=0.174 Sum_probs=227.1
Q ss_pred cEEEEcCCCeEEEEEcC-CCCCeeEEEEEc-CCc-EEEEEeC--CCcEEEEECCCCceeeeecC-CCCEEEEEEecCCcE
Q 001538 8 RIKVIGGDGIEGLLISP-SQLPYKNLEFLQ-NQG-FLISITN--DNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHF 81 (1057)
Q Consensus 8 ~I~v~g~~~~e~~~~~~-~~~~v~~L~F~~-~~~-~Lvs~s~--d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~sp~~~~ 81 (1057)
.+++|..-...-+.... -...|.+++|++ +++ +|..++. +..+.|||...+..+..++. ...|...+|.|....
T Consensus 135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n 214 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN 214 (626)
T ss_pred eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc
Confidence 36777644333222222 234599999998 444 5555553 45688999999888776653 456788999999999
Q ss_pred EEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCe
Q 001538 82 MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 161 (1057)
Q Consensus 82 l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~ 161 (1057)
+.+-+..|.+..|. ...+-|.+..-. +-+....-|.|++|.+ +|. +++|.++|.|.||+..+.+
T Consensus 215 liit~Gk~H~~Fw~--~~~~~l~k~~~~-----------fek~ekk~Vl~v~F~e--ngd-viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 215 LIITCGKGHLYFWT--LRGGSLVKRQGI-----------FEKREKKFVLCVTFLE--NGD-VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred EEEEeCCceEEEEE--ccCCceEEEeec-----------cccccceEEEEEEEcC--CCC-EEeecCCceEEEEeCCCce
Confidence 99999999666664 444445411100 1111236799999999 575 9999999999999998777
Q ss_pred EEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCC
Q 001538 162 IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTG 241 (1057)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~ 241 (1057)
..+.... | .+.|.++|-. .+|. |++|..|..|..||- .-.
T Consensus 279 ~~k~~~a---------H--------------------~ggv~~L~~l-r~Gt-llSGgKDRki~~Wd~-~y~-------- 318 (626)
T KOG2106|consen 279 ISKQVHA---------H--------------------DGGVFSLCML-RDGT-LLSGGKDRKIILWDD-NYR-------- 318 (626)
T ss_pred EEeEeee---------c--------------------CCceEEEEEe-cCcc-EeecCccceEEeccc-ccc--------
Confidence 6543222 3 7899999999 8886 566999999999992 111
Q ss_pred CCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcc
Q 001538 242 SRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSF 321 (1057)
Q Consensus 242 ~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~ 321 (1057)
.+...+ ..+...+|+.+ ....+.++|....+ .++. .+.+... ....+.+..+.
T Consensus 319 ---k~r~~e--lPe~~G~iRtv---------~e~~~di~vGTtrN-------~iL~--Gt~~~~f----~~~v~gh~del 371 (626)
T KOG2106|consen 319 ---KLRETE--LPEQFGPIRTV---------AEGKGDILVGTTRN-------FILQ--GTLENGF----TLTVQGHGDEL 371 (626)
T ss_pred ---cccccc--CchhcCCeeEE---------ecCCCcEEEeeccc-------eEEE--eeecCCc----eEEEEecccce
Confidence 011111 12234566665 11122355543332 1111 1110000 00000001112
Q ss_pred cEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCc
Q 001538 322 ADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHS 401 (1057)
Q Consensus 322 ~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~ 401 (1057)
..+..-|... .++..+.++.+.+|++.. .
T Consensus 372 wgla~hps~~--------q~~T~gqdk~v~lW~~~k------------------~------------------------- 400 (626)
T KOG2106|consen 372 WGLATHPSKN--------QLLTCGQDKHVRLWNDHK------------------L------------------------- 400 (626)
T ss_pred eeEEcCCChh--------heeeccCcceEEEccCCc------------------e-------------------------
Confidence 2222222211 333444555555554100 0
Q ss_pred hhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeee
Q 001538 402 SKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIE 481 (1057)
Q Consensus 402 ~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~ 481 (1057)
.| ...-+-+.. ..++++.+ .++.|...|..-+.|..+..+..+++.
T Consensus 401 --~w---------------------t~~~~d~~~--~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-------- 446 (626)
T KOG2106|consen 401 --EW---------------------TKIIEDPAE--CADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-------- 446 (626)
T ss_pred --eE---------------------EEEecCcee--EeeccCcc-eEEEeeccceEEEEecccceeEEEEec--------
Confidence 01 000000000 12578888 899999999988889887654333221
Q ss_pred ecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEE
Q 001538 482 VAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 561 (1057)
Q Consensus 482 l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~ 561 (1057)
+.++++|.|+|+|.+||+|+.|+.|+||.+..+.+.-. ..-..+.++|+.|-|
T Consensus 447 ----~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-----------------------r~~k~~gs~ithLDw 499 (626)
T KOG2106|consen 447 ----NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-----------------------RVGKCSGSPITHLDW 499 (626)
T ss_pred ----CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-----------------------EeeeecCceeEEeee
Confidence 45899999999999999999999999999987654211 011113367777777
Q ss_pred cCCCCEEEEEeCCceEEEEe
Q 001538 562 TSSGAKLAVGFECGRVAVLD 581 (1057)
Q Consensus 562 S~~g~~lA~G~~dG~V~vwD 581 (1057)
|+|+++|.+-+-|=.|..|.
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred cCCCceEEeccCceEEEEEc
Confidence 77777777777777777773
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.1e-19 Score=178.45 Aligned_cols=262 Identities=14% Similarity=0.200 Sum_probs=194.8
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
-.+.+|..++|.-+|.|.++++.|.+|++||...+.+++++..++. .|+..
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~----------------------EVlD~------- 65 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH----------------------EVLDA------- 65 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCc----------------------eeeec-------
Confidence 3567899999999999999999999999999999999988854421 22221
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
+.+. ++..++.++.|..|.+||+.+|++++.|.+ |
T Consensus 66 -----------------------------~~s~--Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg---------H----- 100 (307)
T KOG0316|consen 66 -----------------------------ALSS--DNSKFASCGGDKAVQVWDVNTGKVDRRFRG---------H----- 100 (307)
T ss_pred -----------------------------cccc--cccccccCCCCceEEEEEcccCeeeeeccc---------c-----
Confidence 1111 344588889999999999999999999998 4
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEE
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 263 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l 263 (1057)
...|..+.|. .+...+++|+-|.+|++||..+.. ..||..+
T Consensus 101 ---------------~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~s-----------------------~ePiQil 141 (307)
T KOG0316|consen 101 ---------------LAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSRS-----------------------FEPIQIL 141 (307)
T ss_pred ---------------cceeeEEEec-CcceEEEeccccceeEEEEcccCC-----------------------CCccchh
Confidence 7789999999 899999999999999999986531 1122111
Q ss_pred EeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEE
Q 001538 264 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFV 343 (1057)
Q Consensus 264 ~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~ 343 (1057)
+ + .
T Consensus 142 ---------------------------------d-------e---------------a---------------------- 144 (307)
T KOG0316|consen 142 ---------------------------------D-------E---------------A---------------------- 144 (307)
T ss_pred ---------------------------------h-------h---------------h----------------------
Confidence 0 0 0
Q ss_pred EcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCC
Q 001538 344 LTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGH 423 (1057)
Q Consensus 344 l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (1057)
.+| |..+.
T Consensus 145 --~D~--------------------------------------V~Si~-------------------------------- 152 (307)
T KOG0316|consen 145 --KDG--------------------------------------VSSID-------------------------------- 152 (307)
T ss_pred --cCc--------------------------------------eeEEE--------------------------------
Confidence 000 00000
Q ss_pred CcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEE
Q 001538 424 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 503 (1057)
Q Consensus 424 ~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lav 503 (1057)
+ .+..|++|+.||++|.||++.+.+. .+-...||++++|++|++.+.+
T Consensus 153 ----v---------------~~heIvaGS~DGtvRtydiR~G~l~-------------sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 153 ----V---------------AEHEIVAGSVDGTVRTYDIRKGTLS-------------SDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred ----e---------------cccEEEeeccCCcEEEEEeecceee-------------hhhcCCcceeEEecCCCCEEEE
Confidence 0 0125899999999999999988731 1122349999999999999999
Q ss_pred EecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCe--EEEEEcCCCCEEEEEeCCceEEEEe
Q 001538 504 GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV--RALQFTSSGAKLAVGFECGRVAVLD 581 (1057)
Q Consensus 504 g~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~I--tsLa~S~~g~~lA~G~~dG~V~vwD 581 (1057)
++.|+++++.|-.+.+.. ..+.+|...= ...+++....++++|++||.|.+||
T Consensus 201 ~~l~stlrLlDk~tGklL-------------------------~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 201 SSLDSTLRLLDKETGKLL-------------------------KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred eeccceeeecccchhHHH-------------------------HHhcccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence 999999999987665432 1334554322 2345667777999999999999999
Q ss_pred CCCCeEEEEeecCCCCCCC-eEEEEEe
Q 001538 582 MNLLSVLFFTDDISGSSSP-IISMTWT 607 (1057)
Q Consensus 582 i~~~~~l~~~~~~~g~~~~-V~sl~f~ 607 (1057)
+....++..+.. ++.. |++|+|+
T Consensus 256 Lvd~~~~sk~~~---~~~v~v~dl~~h 279 (307)
T KOG0316|consen 256 LVDETQISKLSV---VSTVIVTDLSCH 279 (307)
T ss_pred eccceeeeeecc---CCceeEEeeecc
Confidence 999998877655 5666 7889888
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.5e-20 Score=211.21 Aligned_cols=262 Identities=15% Similarity=0.188 Sum_probs=198.8
Q ss_pred CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE
Q 001538 68 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 147 (1057)
Q Consensus 68 ~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~ 147 (1057)
.++..++|.|.-.|++++..+|.|++|+|... .|. . ++ .+|.+||.+|.||| .+..+++|+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli------~-----rF----deHdGpVRgv~FH~--~qplFVSGG 70 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLI------D-----RF----DEHDGPVRGVDFHP--TQPLFVSGG 70 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhh--hHH------h-----hh----hccCCccceeeecC--CCCeEEecC
Confidence 57888999999999999999999999998652 222 2 11 35789999999999 477788999
Q ss_pred CCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEE
Q 001538 148 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 227 (1057)
Q Consensus 148 ~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lW 227 (1057)
+|-.|++|+.++.++++++.+ | -..|..+.|| +.=-+|+++++|.+|++|
T Consensus 71 DDykIkVWnYk~rrclftL~G---------H--------------------lDYVRt~~FH-heyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 71 DDYKIKVWNYKTRRCLFTLLG---------H--------------------LDYVRTVFFH-HEYPWILSASDDQTIRIW 120 (1202)
T ss_pred CccEEEEEecccceehhhhcc---------c--------------------cceeEEeecc-CCCceEEEccCCCeEEEE
Confidence 999999999999999988877 3 6789999999 898999999999999999
Q ss_pred eCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccc
Q 001538 228 NTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENL 307 (1057)
Q Consensus 228 d~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~ 307 (1057)
+-.+.. ++.++.
T Consensus 121 Nwqsr~----------------------------------------------------------~iavlt---------- 132 (1202)
T KOG0292|consen 121 NWQSRK----------------------------------------------------------CIAVLT---------- 132 (1202)
T ss_pred eccCCc----------------------------------------------------------eEEEEe----------
Confidence 984421 011100
Q ss_pred eeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcc
Q 001538 308 RCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIM 387 (1057)
Q Consensus 308 ~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i 387 (1057)
| |.-.|
T Consensus 133 --------------------------G------------------------------------------------HnHYV 138 (1202)
T KOG0292|consen 133 --------------------------G------------------------------------------------HNHYV 138 (1202)
T ss_pred --------------------------c------------------------------------------------CceEE
Confidence 0 11011
Q ss_pred eEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCce
Q 001538 388 TVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVF 467 (1057)
Q Consensus 388 t~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l 467 (1057)
-|+ +|+|...++++++-|.+||+||++.-.-
T Consensus 139 McA-------------------------------------------------qFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 139 MCA-------------------------------------------------QFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred Eee-------------------------------------------------ccCCccceEEEecccceEEEEeecchhc
Confidence 111 2555666899999999999999875321
Q ss_pred eEEe-----------eccccee-------eeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeec
Q 001538 468 KLIC-----------ALDAEVQ-------GIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 529 (1057)
Q Consensus 468 ~~l~-----------~l~~~v~-------~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~ 529 (1057)
.... ......+ -.-+.||..-|+.++|.|.-..+++|+.|..|++|++...+.
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--------- 240 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--------- 240 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc---------
Confidence 0000 0000111 112569999999999999999999999999999999865432
Q ss_pred CCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEee
Q 001538 530 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTD 592 (1057)
Q Consensus 530 ~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~ 592 (1057)
+.+ -+..+|...|+|+-|.|.-.++.+.++|++|+|||+...+.+.++.
T Consensus 241 -----WEv---------DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 241 -----WEV---------DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred -----eee---------hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 111 2567899999999999998999999999999999998877777664
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=1.5e-20 Score=196.58 Aligned_cols=111 Identities=22% Similarity=0.363 Sum_probs=87.0
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~ 523 (1057)
.++++++|+.|.+||+||+.++.. +.++. ||..-|.||.| |.+.+++|..||+|+|||+.......
T Consensus 369 r~rlvVSGSSDntIRlwdi~~G~c--LRvLe---------GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpr- 434 (499)
T KOG0281|consen 369 RDRLVVSGSSDNTIRLWDIECGAC--LRVLE---------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR- 434 (499)
T ss_pred cCeEEEecCCCceEEEEeccccHH--HHHHh---------chHHhhhheee--cCceeeeccccceEEEEecccccCCc-
Confidence 356899999999999999999973 33333 78888999998 46789999999999999997642211
Q ss_pred eeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCC
Q 001538 524 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 585 (1057)
Q Consensus 524 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~ 585 (1057)
...+-.|...+..|++.|-.|+|. ...+++.+.|.+|.|||..++
T Consensus 435 ---------------a~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 435 ---------------APASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ---------------ccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence 122334555666799999999995 457899999999999998654
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.6e-19 Score=193.51 Aligned_cols=288 Identities=18% Similarity=0.264 Sum_probs=207.7
Q ss_pred CCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEE
Q 001538 125 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 204 (1057)
Q Consensus 125 ~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vts 204 (1057)
...+|.+|+|+|.+... +++++.- .+.||+..+..++..+.. - ...|.+
T Consensus 25 e~~~vssl~fsp~~P~d-~aVt~S~-rvqly~~~~~~~~k~~sr---------F--------------------k~~v~s 73 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYD-FAVTSSV-RVQLYSSVTRSVRKTFSR---------F--------------------KDVVYS 73 (487)
T ss_pred ccCcceeEecCCCCCCc-eEEeccc-EEEEEecchhhhhhhHHh---------h--------------------ccceeE
Confidence 36789999999975444 6666554 455999988777654432 0 567899
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecC
Q 001538 205 LCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGG 284 (1057)
Q Consensus 205 l~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg 284 (1057)
++|. .||..+++|...|.|+++|+.+. .+++ ....|..|+...+|+. .+..++++|+
T Consensus 74 ~~fR-~DG~LlaaGD~sG~V~vfD~k~r------------~iLR---~~~ah~apv~~~~f~~-------~d~t~l~s~s 130 (487)
T KOG0310|consen 74 VDFR-SDGRLLAAGDESGHVKVFDMKSR------------VILR---QLYAHQAPVHVTKFSP-------QDNTMLVSGS 130 (487)
T ss_pred EEee-cCCeEEEccCCcCcEEEeccccH------------HHHH---HHhhccCceeEEEecc-------cCCeEEEecC
Confidence 9999 99999999999999999997542 1222 1223566777777754 4667788887
Q ss_pred CCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcc
Q 001538 285 DEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQ 364 (1057)
Q Consensus 285 ~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~ 364 (1057)
++ ....+|++. .+.+ .
T Consensus 131 Dd----~v~k~~d~s-----------------------------------------------~a~v-~------------ 146 (487)
T KOG0310|consen 131 DD----KVVKYWDLS-----------------------------------------------TAYV-Q------------ 146 (487)
T ss_pred CC----ceEEEEEcC-----------------------------------------------CcEE-E------------
Confidence 76 233333211 0010 1
Q ss_pred cCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCC
Q 001538 365 QEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV 444 (1057)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~ 444 (1057)
..+..|+..|.|.++.+ ..
T Consensus 147 -------------~~l~~htDYVR~g~~~~------------------------------------------------~~ 165 (487)
T KOG0310|consen 147 -------------AELSGHTDYVRCGDISP------------------------------------------------AN 165 (487)
T ss_pred -------------EEecCCcceeEeecccc------------------------------------------------CC
Confidence 12333555555544422 12
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccce
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
+.+++||+.||+||+||..... ..+..+ .|..+|..|.|-|.|..+|+++.+ .|+|||+.+....
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~-~~v~el----------nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql--- 230 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLT-SRVVEL----------NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL--- 230 (487)
T ss_pred CeEEEecCCCceEEEEEeccCC-ceeEEe----------cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee---
Confidence 3479999999999999998763 122222 366799999999999999998875 7999999754221
Q ss_pred eeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEE
Q 001538 525 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl 604 (1057)
......|...||||++..++..|.+|+-||.|+|||+.+-++++.+. .++||.++
T Consensus 231 ---------------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~pvLsi 285 (487)
T KOG0310|consen 231 ---------------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGPVLSI 285 (487)
T ss_pred ---------------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccceeeE
Confidence 11222399999999999999999999999999999999999999886 48999999
Q ss_pred EEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcc
Q 001538 605 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 653 (1057)
Q Consensus 605 ~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~ 653 (1057)
+.+ ||++.++.|..+|.+.+-+...++
T Consensus 286 avs----------------------~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 286 AVS----------------------PDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred Eec----------------------CCCceEEEecccceeeeehhhccc
Confidence 998 889999999999998887554433
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.3e-19 Score=191.80 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=125.7
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCC---ceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCC
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR---SLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 99 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~---~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~ 99 (1057)
.+...|.+++|++||.||++++.|.+..+|.+..- ++.+++- +..+|..+.|+||.+|++....+-.+++|+.+.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t- 300 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT- 300 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc-
Confidence 34567999999999999999999999999997543 3466664 457899999999999999988888666665544
Q ss_pred CCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccC
Q 001538 100 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 179 (1057)
Q Consensus 100 ~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (1057)
|.+.. . .+..+.-.+.+.+|.| ||.++++|+.|++|..||+..+. ....++
T Consensus 301 -gd~~~---~-----------y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g----------- 351 (519)
T KOG0293|consen 301 -GDLRH---L-----------YPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNI-LGNWEG----------- 351 (519)
T ss_pred -chhhh---h-----------cccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcch-hhcccc-----------
Confidence 43320 0 1122345789999999 79999999999999999997544 333333
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 180 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 180 ~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
.+.+.|.+++.. +||.++++...|..|++++..+.
T Consensus 352 -----------------vr~~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 352 -----------------VRDPKVHDLAIT-YDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred -----------------cccceeEEEEEc-CCCcEEEEEecccceeeechhhh
Confidence 126789999999 99999999999999999988653
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.84 E-value=2e-20 Score=195.62 Aligned_cols=279 Identities=15% Similarity=0.252 Sum_probs=193.7
Q ss_pred CCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeE
Q 001538 124 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 203 (1057)
Q Consensus 124 ~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vt 203 (1057)
.....|.|+++. +++ +++|..|.+|++||..+-.++..+.+ | .+.|.
T Consensus 195 e~skgVYClQYD---D~k-iVSGlrDnTikiWD~n~~~c~~~L~G---------H--------------------tGSVL 241 (499)
T KOG0281|consen 195 ENSKGVYCLQYD---DEK-IVSGLRDNTIKIWDKNSLECLKILTG---------H--------------------TGSVL 241 (499)
T ss_pred ccCCceEEEEec---chh-hhcccccCceEEeccccHHHHHhhhc---------C--------------------CCcEE
Confidence 345679999986 454 99999999999999998888777666 3 88899
Q ss_pred EEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEec
Q 001538 204 ALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYG 283 (1057)
Q Consensus 204 sl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~g 283 (1057)
|+.|. .+.|++|++|.+|++||.++++ ++..+ + .|-+.|..+.++.
T Consensus 242 CLqyd---~rviisGSSDsTvrvWDv~tge-----------~l~tl-i---hHceaVLhlrf~n---------------- 287 (499)
T KOG0281|consen 242 CLQYD---ERVIVSGSSDSTVRVWDVNTGE-----------PLNTL-I---HHCEAVLHLRFSN---------------- 287 (499)
T ss_pred eeecc---ceEEEecCCCceEEEEeccCCc-----------hhhHH-h---hhcceeEEEEEeC----------------
Confidence 99886 5699999999999999999874 11110 0 0112222222210
Q ss_pred CCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhc
Q 001538 284 GDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLS 363 (1057)
Q Consensus 284 g~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~ 363 (1057)
..++..+.+..+.+|| |.
T Consensus 288 -------------------------------------------------------g~mvtcSkDrsiaVWd-------m~ 305 (499)
T KOG0281|consen 288 -------------------------------------------------------GYMVTCSKDRSIAVWD-------MA 305 (499)
T ss_pred -------------------------------------------------------CEEEEecCCceeEEEe-------cc
Confidence 0334445566778887 31
Q ss_pred ccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCC
Q 001538 364 QQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHS 443 (1057)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~ 443 (1057)
.+. . +| ...+ +-|+..++. ...-
T Consensus 306 sps------------~-------it----------------~rrV-------------------LvGHrAaVN---vVdf 328 (499)
T KOG0281|consen 306 SPT------------D-------IT----------------LRRV-------------------LVGHRAAVN---VVDF 328 (499)
T ss_pred Cch------------H-------HH----------------HHHH-------------------Hhhhhhhee---eecc
Confidence 110 0 00 0000 222222221 1233
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~ 523 (1057)
+.++|+|++.|.+||+|+.++.++ +.++ .+|..-|-|+.+ .++++++|+.|.+|++|++.....
T Consensus 329 d~kyIVsASgDRTikvW~~st~ef--vRtl---------~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~c--- 392 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEF--VRTL---------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC--- 392 (499)
T ss_pred ccceEEEecCCceEEEEeccceee--ehhh---------hcccccceehhc--cCeEEEecCCCceEEEEeccccHH---
Confidence 445999999999999999998873 2333 377778888877 578999999999999999865432
Q ss_pred eeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEE---EE---eecCCCC
Q 001538 524 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL---FF---TDDISGS 597 (1057)
Q Consensus 524 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l---~~---~~~~~g~ 597 (1057)
..++.+|..-|.|+.|. .+.+++|.-||+|+|||+..+..- .. ......|
T Consensus 393 ----------------------LRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h 448 (499)
T KOG0281|consen 393 ----------------------LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH 448 (499)
T ss_pred ----------------------HHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc
Confidence 34678999999999996 468999999999999999654211 00 1112358
Q ss_pred CCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCc
Q 001538 598 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 652 (1057)
Q Consensus 598 ~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg 652 (1057)
++.|-.|+|. ...+++.+.|.+|.|||-..|
T Consensus 449 sgRVFrLQFD------------------------~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 449 SGRVFRLQFD------------------------EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred cceeEEEeec------------------------ceEEEeccCCCeEEEEEcCCC
Confidence 8899999987 567899999999999996554
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=193.66 Aligned_cols=285 Identities=18% Similarity=0.201 Sum_probs=198.6
Q ss_pred CCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCC---eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCC
Q 001538 124 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA---QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 200 (1057)
Q Consensus 124 ~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 200 (1057)
.|...|+-+.|+| +|++||+++.|.+..+|++... ++++++.+ | ..
T Consensus 222 ~htdEVWfl~FS~--nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg---------h--------------------~~ 270 (519)
T KOG0293|consen 222 DHTDEVWFLQFSH--NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG---------H--------------------SQ 270 (519)
T ss_pred hCCCcEEEEEEcC--CCeeEeeccCCceEEEEEEecCcceeeeeeeec---------c--------------------cC
Confidence 4678899999999 7999999999999999998654 34555555 3 78
Q ss_pred CeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEE
Q 001538 201 EISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLF 280 (1057)
Q Consensus 201 ~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Ll 280 (1057)
+|.-+.|+ ||.+++++.+.|-.+.+||+.+|+... .+..+ ....+.+..|++ ++.-+
T Consensus 271 ~V~yi~wS-PDdryLlaCg~~e~~~lwDv~tgd~~~-------------~y~~~-~~~S~~sc~W~p--------Dg~~~ 327 (519)
T KOG0293|consen 271 PVSYIMWS-PDDRYLLACGFDEVLSLWDVDTGDLRH-------------LYPSG-LGFSVSSCAWCP--------DGFRF 327 (519)
T ss_pred ceEEEEEC-CCCCeEEecCchHheeeccCCcchhhh-------------hcccC-cCCCcceeEEcc--------CCcee
Confidence 99999999 999999999999999999999985321 11111 234567788976 34447
Q ss_pred EecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhh
Q 001538 281 VYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTT 360 (1057)
Q Consensus 281 v~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~ 360 (1057)
|+|+.+ ..+.+|+++.. .+.-|.
T Consensus 328 V~Gs~d----r~i~~wdlDgn-----------------------------------------------~~~~W~------ 350 (519)
T KOG0293|consen 328 VTGSPD----RTIIMWDLDGN-----------------------------------------------ILGNWE------ 350 (519)
T ss_pred EecCCC----CcEEEecCCcc-----------------------------------------------hhhccc------
Confidence 777766 22333332200 011111
Q ss_pred hhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccc
Q 001538 361 LLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITK 440 (1057)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~ 440 (1057)
... .|.|.++ +
T Consensus 351 ------------gvr--------~~~v~dl-------------------------------------------------a 361 (519)
T KOG0293|consen 351 ------------GVR--------DPKVHDL-------------------------------------------------A 361 (519)
T ss_pred ------------ccc--------cceeEEE-------------------------------------------------E
Confidence 000 0111111 3
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
...+++.+++-..|..||+++.....-. .+-....+|++++.+.|+++..+--.+..+++||+..+..
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVDR------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL 429 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhhh------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH
Confidence 4556667777779999999987654311 1112234899999999999999999999999999985432
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCC--eEEEEEc-CCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP--VRALQFT-SSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 597 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~--ItsLa~S-~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~ 597 (1057)
. ..+.+|+.. |-.-+|- -+..++|+|++|+.|+||+..++.++-.+ +||
T Consensus 430 v-------------------------~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L---sGH 481 (519)
T KOG0293|consen 430 V-------------------------RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL---SGH 481 (519)
T ss_pred H-------------------------HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee---cCC
Confidence 1 123344332 1122333 24469999999999999999999988664 679
Q ss_pred CCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 598 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 598 ~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
+..|.+++|++ -+-.+++++++||+|+||-.
T Consensus 482 s~~vNcVswNP---------------------~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 482 SKTVNCVSWNP---------------------ADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred cceeeEEecCC---------------------CCHHHhhccCCCCeEEEecC
Confidence 99999999983 34567999999999999953
No 61
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=195.07 Aligned_cols=138 Identities=15% Similarity=0.199 Sum_probs=104.1
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceee
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 526 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~ 526 (1057)
.++|.+.|.++|+||++.+.+.+-.. .+.++.+++.+|-.+.+.+|+.+|.|.+..+..-+.......
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLlti~------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLLTIT------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred eEEEecCCceEEEEEeccceeeEEEe------------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc
Confidence 68999999999999999998422211 235899999999999999999999998887755332111000
Q ss_pred eecCCCceEEeccCCcceeeEEEeeCCC--CeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEE
Q 001538 527 VLETKSEVHALPEGKISLCRAVFSLVNS--PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 527 ~~~~~~~~~~i~~~~g~~~~~~~~~h~~--~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl 604 (1057)
...+. ..+-+ +..+.+|.+ +|+||++|-||.+|++|+.||.|+|||+...+++.+... ..++|+-+
T Consensus 258 -----~k~~~---~~~t~-~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~---~kgpVtnL 325 (476)
T KOG0646|consen 258 -----QKGRH---EENTQ-INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT---SKGPVTNL 325 (476)
T ss_pred -----ccccc---cccce-eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh---hcccccee
Confidence 00000 01111 236778888 999999999999999999999999999999999887654 57899999
Q ss_pred EEee
Q 001538 605 TWTE 608 (1057)
Q Consensus 605 ~f~~ 608 (1057)
++.+
T Consensus 326 ~i~~ 329 (476)
T KOG0646|consen 326 QINP 329 (476)
T ss_pred Eeec
Confidence 9873
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=4.3e-19 Score=188.58 Aligned_cols=145 Identities=15% Similarity=0.236 Sum_probs=121.5
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~ 523 (1057)
+...+.+++.|.+||.||+..+... ..+. .+.++++|+++|...+||+|+.|..++|||.+.....
T Consensus 270 d~~v~yS~SwDHTIk~WDletg~~~--~~~~----------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs-- 335 (423)
T KOG0313|consen 270 DATVIYSVSWDHTIKVWDLETGGLK--STLT----------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS-- 335 (423)
T ss_pred CCCceEeecccceEEEEEeecccce--eeee----------cCcceeEeecccccceeeecCCCCceeecCCCCCCCc--
Confidence 3667899999999999999887631 1111 2358999999999999999999999999998765332
Q ss_pred eeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC-CEEEEEeCCceEEEEeCCCCe-EEEEeecCCCCCCCe
Q 001538 524 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLS-VLFFTDDISGSSSPI 601 (1057)
Q Consensus 524 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g-~~lA~G~~dG~V~vwDi~~~~-~l~~~~~~~g~~~~V 601 (1057)
.+...|.+|+.-|.++.++|.. ..|++|+.||+++|||++..+ .+|.+.. |...|
T Consensus 336 --------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~---h~DKv 392 (423)
T KOG0313|consen 336 --------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG---HNDKV 392 (423)
T ss_pred --------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc---CCceE
Confidence 3345788999999999999965 458999999999999999887 8888754 99999
Q ss_pred EEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 602 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 602 ~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
.++.|. ++.++++|+.|.+|+|+.
T Consensus 393 l~vdW~-----------------------~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 393 LSVDWN-----------------------EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEEecc-----------------------CCceEEeccCcceEEEec
Confidence 999996 367899999999999984
No 63
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=1.8e-17 Score=195.84 Aligned_cols=173 Identities=17% Similarity=0.102 Sum_probs=135.0
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecc--ccee--eeeecCCCCCEEEEEEec-CCCeEEEEecCccEEEEEe
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALD--AEVQ--GIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNL 515 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~--~~v~--~i~l~~~~~~V~~v~fsp-d~~~Lavg~~dG~V~l~~~ 515 (1057)
...++..+++++.+..+..|+...+.. +..+. +... ...+.+|..+|.+++|+| ++..||+|+.||+|+||++
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTA--VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceE--EeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 455666788888888888998776542 11111 1111 112568999999999999 8889999999999999999
Q ss_pred cCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC-CEEEEEeCCceEEEEeCCCCeEEEEeecC
Q 001538 516 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDI 594 (1057)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g-~~lA~G~~dG~V~vwDi~~~~~l~~~~~~ 594 (1057)
........ -..++..+.+|...|.+|+|+|++ .+||+|+.||+|+|||++++..+..+.
T Consensus 106 ~~~~~~~~------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-- 165 (493)
T PTZ00421 106 PEEGLTQN------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-- 165 (493)
T ss_pred CCCccccc------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--
Confidence 75422100 001234677899999999999985 699999999999999999988877654
Q ss_pred CCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 595 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 595 ~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
+|...|.+++|+ |++.+|++++.|++|++||..+++.+...
T Consensus 166 -~h~~~V~sla~s----------------------pdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 166 -CHSDQITSLEWN----------------------LDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred -CCCCceEEEEEE----------------------CCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 489999999998 88999999999999999999998876543
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=4.7e-19 Score=194.13 Aligned_cols=306 Identities=16% Similarity=0.258 Sum_probs=213.1
Q ss_pred CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE
Q 001538 68 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 147 (1057)
Q Consensus 68 ~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~ 147 (1057)
..|++++++|.|-.+++|+-|-.|+.|.+.--+..+. .|+.-. .....+|.+++|+| .|..+|+++
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~--~fr~l~----------P~E~h~i~sl~ys~--Tg~~iLvvs 233 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR--SFRQLQ----------PCETHQINSLQYSV--TGDQILVVS 233 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccch--hhhccC----------cccccccceeeecC--CCCeEEEEe
Confidence 4689999999999999999999888888643221111 232211 12356799999999 588899999
Q ss_pred CCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcEEE
Q 001538 148 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILL 226 (1057)
Q Consensus 148 ~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG-~~latg~~DG~I~l 226 (1057)
....++|+|-....+.....+ |+-.. .....+.|...++|.||| |+. ..++|.+.||++++
T Consensus 234 g~aqakl~DRdG~~~~e~~KG-DQYI~----------------Dm~nTKGHia~lt~g~wh-P~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKG-DQYIR----------------DMYNTKGHIAELTCGCWH-PDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred cCcceeEEccCCceeeeeecc-chhhh----------------hhhccCCceeeeeccccc-cCcccceEEecCCCcEEE
Confidence 999999999765555544443 21111 123455678999999999 654 67999999999999
Q ss_pred EeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCccccccc
Q 001538 227 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 306 (1057)
Q Consensus 227 Wd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~ 306 (1057)
||++.... + +.|+-
T Consensus 296 Wdv~~~k~---------------------q------------------------------------~qVik--------- 309 (641)
T KOG0772|consen 296 WDVNNTKS---------------------Q------------------------------------LQVIK--------- 309 (641)
T ss_pred EecCCchh---------------------h------------------------------------eeEEe---------
Confidence 99954210 0 00000
Q ss_pred ceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCc
Q 001538 307 LRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPI 386 (1057)
Q Consensus 307 ~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 386 (1057)
+-+..+ ..-+
T Consensus 310 -------------------~k~~~g---------------------------------------------------~Rv~ 319 (641)
T KOG0772|consen 310 -------------------TKPAGG---------------------------------------------------KRVP 319 (641)
T ss_pred -------------------eccCCC---------------------------------------------------cccC
Confidence 000000 0001
Q ss_pred ceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCc
Q 001538 387 MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV 466 (1057)
Q Consensus 387 it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~ 466 (1057)
+|.+ ++++++++|++|..||+|.+||.....
T Consensus 320 ~tsC-------------------------------------------------~~nrdg~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 320 VTSC-------------------------------------------------AWNRDGKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred ceee-------------------------------------------------ecCCCcchhhhcccCCceeeeecCCcc
Confidence 1111 245566679999999999999985544
Q ss_pred eeEEeecccceeeeeecCCCC--CEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcce
Q 001538 467 FKLICALDAEVQGIEVAGSRA--PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 544 (1057)
Q Consensus 467 l~~l~~l~~~v~~i~l~~~~~--~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~ 544 (1057)
..+.+..+ +.|.. .|+||+|++||++|++-+.|+++++||++.....
T Consensus 351 v~p~~~vk--------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp----------------------- 399 (641)
T KOG0772|consen 351 VRPVMKVK--------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP----------------------- 399 (641)
T ss_pred cccceEee--------eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc-----------------------
Confidence 32222222 13444 8999999999999999999999999999754221
Q ss_pred eeEEEee--CCCCeEEEEEcCCCCEEEEEe------CCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCccccc
Q 001538 545 CRAVFSL--VNSPVRALQFTSSGAKLAVGF------ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLA 616 (1057)
Q Consensus 545 ~~~~~~~--h~~~ItsLa~S~~g~~lA~G~------~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~ 616 (1057)
+.+..+ ...+-+..+|||+.++|++|. ..|++.++|..+...++.+.. ....|..+.|+
T Consensus 400 -L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aSvv~~~Wh--------- 466 (641)
T KOG0772|consen 400 -LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STASVVRCLWH--------- 466 (641)
T ss_pred -hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC---CCceEEEEeec---------
Confidence 111111 233567889999999999975 567899999999999998876 57889999999
Q ss_pred CCCCCCCCcCCCCCCCcEEEEEecCCeEEEE
Q 001538 617 KNPNHSEREVPVNPAEEVIIVLFKDAKISIV 647 (1057)
Q Consensus 617 ~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~ 647 (1057)
|-=+.|++|+.||++.+|
T Consensus 467 -------------pkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 467 -------------PKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred -------------chhhheeeecCCCceEEE
Confidence 445668999999999988
No 65
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.83 E-value=2.1e-18 Score=178.56 Aligned_cols=286 Identities=12% Similarity=0.168 Sum_probs=195.9
Q ss_pred CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEE
Q 001538 66 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 145 (1057)
Q Consensus 66 ~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli 145 (1057)
+++.|..+.|+|++.++++|..|..|.+|+...+... |. .++.|.++|..+.|.+ ++++|++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-----~~-----------~lkgHsgAVM~l~~~~--d~s~i~S 107 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-----FW-----------VLKGHSGAVMELHGMR--DGSHILS 107 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccccccc-----ee-----------eeccccceeEeeeecc--CCCEEEE
Confidence 4689999999999999999999999999995443221 11 3356789999999999 7899999
Q ss_pred EECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcE
Q 001538 146 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDI 224 (1057)
Q Consensus 146 ~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG-~~latg~~DG~I 224 (1057)
++.|.+|+.||+++|+.++.+.. | ..-|.+++-. .-| ..|.+|+.||++
T Consensus 108 ~gtDk~v~~wD~~tG~~~rk~k~---------h--------------------~~~vNs~~p~-rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIRKHKG---------H--------------------TSFVNSLDPS-RRGPQLVCSGSDDGTL 157 (338)
T ss_pred ecCCceEEEEecccceeeehhcc---------c--------------------cceeeecCcc-ccCCeEEEecCCCceE
Confidence 99999999999999999887665 3 4555555533 444 467889999999
Q ss_pred EEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCccccc
Q 001538 225 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 304 (1057)
Q Consensus 225 ~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~ 304 (1057)
++||+.+.+ ++.. -..+.++..+.|.- .+.-.++|
T Consensus 158 kl~D~R~k~-----------~~~t-----~~~kyqltAv~f~d--------~s~qv~sg--------------------- 192 (338)
T KOG0265|consen 158 KLWDIRKKE-----------AIKT-----FENKYQLTAVGFKD--------TSDQVISG--------------------- 192 (338)
T ss_pred EEEeecccc-----------hhhc-----cccceeEEEEEecc--------cccceeec---------------------
Confidence 999997643 1111 01123444554421 11111222
Q ss_pred ccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCC
Q 001538 305 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 384 (1057)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 384 (1057)
+-++.|.+|| +... .....+++|.
T Consensus 193 ----------------------------------------gIdn~ikvWd-------~r~~---------d~~~~lsGh~ 216 (338)
T KOG0265|consen 193 ----------------------------------------GIDNDIKVWD-------LRKN---------DGLYTLSGHA 216 (338)
T ss_pred ----------------------------------------cccCceeeec-------cccC---------cceEEeeccc
Confidence 2245677777 2211 1122344455
Q ss_pred CcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCC
Q 001538 385 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 464 (1057)
Q Consensus 385 ~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~ 464 (1057)
.+||.+.. ++++..+.+-+.|.+||+||+.-
T Consensus 217 DtIt~lsl-------------------------------------------------s~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 217 DTITGLSL-------------------------------------------------SRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred CceeeEEe-------------------------------------------------ccCCCccccccccceEEEEEecc
Confidence 55554433 34445677778899999999875
Q ss_pred Cce--eEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCc
Q 001538 465 PVF--KLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 542 (1057)
Q Consensus 465 ~~l--~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g 542 (1057)
... ..+....+... ........++|+|+++.+..|+.|..|++||......
T Consensus 248 ~~p~~R~v~if~g~~h-----nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~---------------------- 300 (338)
T KOG0265|consen 248 FAPSQRCVKIFQGHIH-----NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI---------------------- 300 (338)
T ss_pred cCCCCceEEEeecchh-----hhhhhcceeeccCCCCccccccccceEEEeecccccE----------------------
Confidence 432 11222222111 1112345678999999999999999999999744221
Q ss_pred ceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEE
Q 001538 543 SLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 579 (1057)
Q Consensus 543 ~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~v 579 (1057)
+..+.+|.+.|++++|.|...++.+++.|.+|.+
T Consensus 301 ---lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 301 ---LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ---EEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 3477899999999999999999999999999876
No 66
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=3.9e-18 Score=192.37 Aligned_cols=379 Identities=13% Similarity=0.153 Sum_probs=248.4
Q ss_pred CccccCCcEEEEcCCCeEEEEEcCC----------------------CC---CeeEEEEEcCCcEEEEEeCCCcEEEEEC
Q 001538 1 MCLCRDGRIKVIGGDGIEGLLISPS----------------------QL---PYKNLEFLQNQGFLISITNDNEIQVWSL 55 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e~~~~~~~----------------------~~---~v~~L~F~~~~~~Lvs~s~d~~I~VWdl 55 (1057)
++|+.+|.|++|-..+.+.+-+.|. ++ ..-++.|.+....|.++-.|..|.|||+
T Consensus 274 ~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDv 353 (1080)
T KOG1408|consen 274 ACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDV 353 (1080)
T ss_pred EEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEec
Confidence 4788999999997766554433321 11 1557899988889999999999999999
Q ss_pred CCC----ceeeeecCCCCEEEEEEecC-----------CcEEEEEccCCcEEEEEEeCCCC-----------ceeccCcc
Q 001538 56 ESR----SLACCLKWESNITAFSVISG-----------SHFMYIGDENGLMSVIKYDADEG-----------KLFQLPYN 109 (1057)
Q Consensus 56 ~s~----~~l~tl~~~~~Ita~~~sp~-----------~~~l~vG~~~G~v~v~~~d~~~~-----------~l~~~~~~ 109 (1057)
+.- +....+.+..-|+.++.-|. -..+.+.++||+|++|+++.... .+...+|.
T Consensus 354 rD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~ 433 (1080)
T KOG1408|consen 354 RDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE 433 (1080)
T ss_pred cccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence 863 33333334455666655541 12367889999999999876221 11122333
Q ss_pred cchhhhhh---hcCCCC------CCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCC
Q 001538 110 ISADALSE---KAGFPL------LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 180 (1057)
Q Consensus 110 i~~~~~~~---~~g~~~------~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (1057)
-.+.+... +.++.+ ...-.|.+|+.+| +|++|+.|.+-|.+++|||.+-+.....+. |
T Consensus 434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA---------H-- 500 (1080)
T KOG1408|consen 434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEYTCFMEA---------H-- 500 (1080)
T ss_pred cCchhhhhhccCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhhhhheec---------c--
Confidence 22222111 111111 1234589999999 799999999999999999987776655543 4
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEecCC--CCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCc
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRL 258 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pd--G~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~ 258 (1057)
+.+|.|+.|+-|+ .+.||+++.|.-|.++|+...-. .+.. -..|..
T Consensus 501 ------------------esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~----------l~qt----ld~HSs 548 (1080)
T KOG1408|consen 501 ------------------ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD----------LVQT----LDGHSS 548 (1080)
T ss_pred ------------------cceeEEEeecCchhhhHhhhhccCCceEEEEecccccc----------hhhh----hccccc
Confidence 8899999998554 36799999999999999954311 1221 123556
Q ss_pred cEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCc
Q 001538 259 PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHK 338 (1057)
Q Consensus 259 pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~ 338 (1057)
.|..++|.|. + ...-.++.|.| ..+ + |+..+ .
T Consensus 549 sITsvKFa~~-----g-ln~~MiscGAD----ksi-m--------Fr~~q--------------------k--------- 580 (1080)
T KOG1408|consen 549 SITSVKFACN-----G-LNRKMISCGAD----KSI-M--------FRVNQ--------------------K--------- 580 (1080)
T ss_pred ceeEEEEeec-----C-CceEEEeccCc----hhh-h--------eehhc--------------------c---------
Confidence 7888888762 1 22333333333 001 0 00000 0
Q ss_pred eEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCC
Q 001538 339 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSH 418 (1057)
Q Consensus 339 ~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 418 (1057)
..+|.+.. . |+..+
T Consensus 581 ------~~~g~~f~-------------------------r----~t~t~------------------------------- 594 (1080)
T KOG1408|consen 581 ------ASSGRLFP-------------------------R----HTQTL------------------------------- 594 (1080)
T ss_pred ------ccCceecc-------------------------c----ccccc-------------------------------
Confidence 00111100 0 00000
Q ss_pred CCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCC
Q 001538 419 TQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN 498 (1057)
Q Consensus 419 ~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~ 498 (1057)
+......+ ++.+...+++|+.+|..|||+|+..+.+. ..+++. .+|.+..-.|..+|.+
T Consensus 595 ------------~ktTlYDm-~Vdp~~k~v~t~cQDrnirif~i~sgKq~--k~FKgs------~~~eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 595 ------------SKTTLYDM-AVDPTSKLVVTVCQDRNIRIFDIESGKQV--KSFKGS------RDHEGDLIKVILDPSG 653 (1080)
T ss_pred ------------ccceEEEe-eeCCCcceEEEEecccceEEEecccccee--eeeccc------ccCCCceEEEEECCCc
Confidence 00000001 35566678999999999999999998843 333332 2566678889999999
Q ss_pred CeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEE
Q 001538 499 SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 578 (1057)
Q Consensus 499 ~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~ 578 (1057)
-+||+...|.++.+|||..++- ++..-+|...||.|.|++|.++|.+.+.||-|.
T Consensus 654 iY~atScsdktl~~~Df~sgEc-------------------------vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 654 IYLATSCSDKTLCFVDFVSGEC-------------------------VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred cEEEEeecCCceEEEEeccchh-------------------------hhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 9999999999999999976532 345568999999999999999999999999999
Q ss_pred EEeCCC
Q 001538 579 VLDMNL 584 (1057)
Q Consensus 579 vwDi~~ 584 (1057)
||.+--
T Consensus 709 vW~lp~ 714 (1080)
T KOG1408|consen 709 VWKLPL 714 (1080)
T ss_pred EEECch
Confidence 999854
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=5.5e-18 Score=172.17 Aligned_cols=261 Identities=18% Similarity=0.270 Sum_probs=190.1
Q ss_pred CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEE
Q 001538 67 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 146 (1057)
Q Consensus 67 ~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~ 146 (1057)
..++.++++.-+|..++.|+.+++++||+++.++ +. ..+ .-++|...|..++|+|. ...+++++
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~-----~~~--------~~~gh~~svdql~w~~~-~~d~~ata 83 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FR-----KEL--------VYRGHTDSVDQLCWDPK-HPDLFATA 83 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchh--hh-----hhh--------cccCCCcchhhheeCCC-CCcceEEe
Confidence 3688999999999999999999999999988753 21 111 12456778999999997 46689999
Q ss_pred ECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEE
Q 001538 147 YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 226 (1057)
Q Consensus 147 ~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~l 226 (1057)
+.|.+|++||++.++++..... ..+=.-++|+ |+|.+++.|..|..|.+
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~------------------------------~~eni~i~ws-p~g~~~~~~~kdD~it~ 132 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIET------------------------------KGENINITWS-PDGEYIAVGNKDDRITF 132 (313)
T ss_pred cCCceEEEEEeccCcEEEEeec------------------------------cCcceEEEEc-CCCCEEEEecCcccEEE
Confidence 9999999999999999887665 3334567899 99999999999999999
Q ss_pred EeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCccccccc
Q 001538 227 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 306 (1057)
Q Consensus 227 Wd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~ 306 (1057)
.|+.+... +.. .. ..--+.-+.| ..
T Consensus 133 id~r~~~~-----------~~~----~~-~~~e~ne~~w-----------------------------------~~---- 157 (313)
T KOG1407|consen 133 IDARTYKI-----------VNE----EQ-FKFEVNEISW-----------------------------------NN---- 157 (313)
T ss_pred EEecccce-----------eeh----hc-ccceeeeeee-----------------------------------cC----
Confidence 99865310 000 00 0000000111 00
Q ss_pred ceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcC-CCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCC
Q 001538 307 LRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTS-PGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 385 (1057)
Q Consensus 307 ~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~-~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 385 (1057)
+..++.+++ .|.+.+ |+++
T Consensus 158 -------------------------------~nd~Fflt~GlG~v~I---------Lsyp-------------------- 177 (313)
T KOG1407|consen 158 -------------------------------SNDLFFLTNGLGCVEI---------LSYP-------------------- 177 (313)
T ss_pred -------------------------------CCCEEEEecCCceEEE---------Eecc--------------------
Confidence 001222222 244444 2111
Q ss_pred cceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCC
Q 001538 386 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 465 (1057)
Q Consensus 386 ~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~ 465 (1057)
T Consensus 178 -------------------------------------------------------------------------------- 177 (313)
T KOG1407|consen 178 -------------------------------------------------------------------------------- 177 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCccee
Q 001538 466 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 545 (1057)
Q Consensus 466 ~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 545 (1057)
.|+++..++ .|+...-||.|+|+|++||+|+.|-.|-|||+..- .|
T Consensus 178 sLkpv~si~---------AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-------------------------iC 223 (313)
T KOG1407|consen 178 SLKPVQSIK---------AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-------------------------IC 223 (313)
T ss_pred ccccccccc---------cCCcceEEEEECCCCceEeeccccceeeccChhHh-------------------------hh
Confidence 111221121 45556778999999999999999999999998542 34
Q ss_pred eEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEe
Q 001538 546 RAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 546 ~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~ 607 (1057)
...+..+.-||..|+||.||++||+|++|-.|-|=++++|..++..++ .++-.+++|+
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~----~~~t~tVAWH 281 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC----EGPTFTVAWH 281 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec----cCCceeEEec
Confidence 457778999999999999999999999999999999999999999875 7889999999
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.6e-18 Score=197.60 Aligned_cols=147 Identities=16% Similarity=0.281 Sum_probs=115.3
Q ss_pred EEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC-CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcc
Q 001538 31 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYN 109 (1057)
Q Consensus 31 ~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~ 109 (1057)
-|.++..+ +++++-+..|.+|+-.++.+..-... ...||++.++++|.+|++|..+|.|.||+..... .
T Consensus 182 lldWss~n--~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--------~ 251 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--------K 251 (484)
T ss_pred HhhcccCC--eEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--------c
Confidence 45677655 67777888999999999986444444 7899999999999999999999988888743321 1
Q ss_pred cchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEE-ecCCcccccCCccCCCCCCCCCc
Q 001538 110 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTF 188 (1057)
Q Consensus 110 i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~ 188 (1057)
++. +...|...|-+++|+. ..+.+|+.+|.|..+|++..+.... ..+ |
T Consensus 252 ~~~--------~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~~~~~~~~~~~---------H---------- 300 (484)
T KOG0305|consen 252 TRT--------LRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRISQHVVSTLQG---------H---------- 300 (484)
T ss_pred ccc--------ccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEecchhhhhhhhc---------c----------
Confidence 111 1112677899999995 3599999999999999987654432 111 3
Q ss_pred ccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeC
Q 001538 189 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 229 (1057)
Q Consensus 189 ~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~ 229 (1057)
...|+.+.|+ +|+.++|+|+.|+.+.+||.
T Consensus 301 ----------~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 301 ----------RQEVCGLKWS-PDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred ----------cceeeeeEEC-CCCCeeccCCCccceEeccC
Confidence 7899999999 99999999999999999998
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-18 Score=191.03 Aligned_cols=280 Identities=19% Similarity=0.297 Sum_probs=200.7
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeee-cCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCcee
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl-~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~ 104 (1057)
..+|.+|+|+|...|=+++...-.+++++..+.....++ .+...+.++.|-.||..++.|++.|.|+|+.+.. +...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHH
Confidence 467999999998877667777889999999988877766 4788899999999999999999999888876322 1111
Q ss_pred ccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCC
Q 001538 105 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 184 (1057)
Q Consensus 105 ~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~ 184 (1057)
. .-.+|..||-.+.|+|. +++.+++|++|+.+++||+.+..+...+.+ |
T Consensus 104 ------R---------~~~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~---------h------ 152 (487)
T KOG0310|consen 104 ------R---------QLYAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAELSG---------H------ 152 (487)
T ss_pred ------H---------HHhhccCceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEEecC---------C------
Confidence 0 11245679999999998 477888899999999999999887434443 3
Q ss_pred CCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEE
Q 001538 185 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLH 264 (1057)
Q Consensus 185 ~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~ 264 (1057)
+..|.|..|++.++..++||+-||.|++||+.+... .+.. +. |..||.
T Consensus 153 --------------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~----------~v~e--ln---hg~pVe--- 200 (487)
T KOG0310|consen 153 --------------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS----------RVVE--LN---HGCPVE--- 200 (487)
T ss_pred --------------cceeEeeccccCCCeEEEecCCCceEEEEEeccCCc----------eeEE--ec---CCCcee---
Confidence 789999999966677899999999999999966421 1111 11 233333
Q ss_pred eeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEE
Q 001538 265 WSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVL 344 (1057)
Q Consensus 265 w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l 344 (1057)
+++++|.++ +++.
T Consensus 201 ----------------------------------------------------------~vl~lpsgs---------~ias 213 (487)
T KOG0310|consen 201 ----------------------------------------------------------SVLALPSGS---------LIAS 213 (487)
T ss_pred ----------------------------------------------------------eEEEcCCCC---------EEEE
Confidence 333333321 3334
Q ss_pred cCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCC
Q 001538 345 TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHI 424 (1057)
Q Consensus 345 ~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (1057)
....++.+|| +... .+.+....-|+..|||+.+.++
T Consensus 214 AgGn~vkVWD-------l~~G--------~qll~~~~~H~KtVTcL~l~s~----------------------------- 249 (487)
T KOG0310|consen 214 AGGNSVKVWD-------LTTG--------GQLLTSMFNHNKTVTCLRLASD----------------------------- 249 (487)
T ss_pred cCCCeEEEEE-------ecCC--------ceehhhhhcccceEEEEEeecC-----------------------------
Confidence 4444666676 2110 1222233337778888887431
Q ss_pred cCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEE
Q 001538 425 KWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVG 504 (1057)
Q Consensus 425 ~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg 504 (1057)
++.|++|+-||.|++||.+... .++.+ .. +++|-+++.+|++..+++|
T Consensus 250 --------------------~~rLlS~sLD~~VKVfd~t~~K--vv~s~-------~~---~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 250 --------------------STRLLSGSLDRHVKVFDTTNYK--VVHSW-------KY---PGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred --------------------CceEeecccccceEEEEccceE--EEEee-------ec---ccceeeEEecCCCceEEEe
Confidence 1368999999999999976543 34333 23 3599999999999999999
Q ss_pred ecCccEEEE
Q 001538 505 NEFGLVYIY 513 (1057)
Q Consensus 505 ~~dG~V~l~ 513 (1057)
..||.|-+-
T Consensus 298 msnGlv~~r 306 (487)
T KOG0310|consen 298 MSNGLVSIR 306 (487)
T ss_pred cccceeeee
Confidence 999988765
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.82 E-value=6.6e-18 Score=179.66 Aligned_cols=301 Identities=14% Similarity=0.210 Sum_probs=206.4
Q ss_pred eeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecC---CcEEEEEccCCcEEEEEEeCCCCceec
Q 001538 29 YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISG---SHFMYIGDENGLMSVIKYDADEGKLFQ 105 (1057)
Q Consensus 29 v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~---~~~l~vG~~~G~v~v~~~d~~~~~l~~ 105 (1057)
|..+.-. .+++++++.||+++|||...+.......+.+.|.++++.-. ...+++++.|.++++|.++.++..+.
T Consensus 108 VSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~- 184 (423)
T KOG0313|consen 108 VSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK- 184 (423)
T ss_pred hhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh-
Confidence 4444444 45899999999999999865555444456678876655433 33599999999999999998764432
Q ss_pred cCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecC-----CcccccCCccCC
Q 001538 106 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG-----KDLQLKDGVVDS 180 (1057)
Q Consensus 106 ~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~-----~~~~~~~~~~~~ 180 (1057)
.. + ..++|..+|.+|..++ +|+++++|+.|.++.||+... ......+. +..+.
T Consensus 185 ------~~-~-----~~~GHk~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~~rrk~~~------- 242 (423)
T KOG0313|consen 185 ------AL-K-----VCRGHKRSVDSVSVDS--SGTRFCSGSWDTMLKIWSVET-DEEDELESSSNRRRKKQK------- 242 (423)
T ss_pred ------HH-h-----HhcccccceeEEEecC--CCCeEEeecccceeeecccCC-Cccccccccchhhhhhhh-------
Confidence 10 0 1236788999999999 799999999999999999332 22111111 00000
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccE
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 260 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI 260 (1057)
....++...+.-.-+.|..+|.++.|. + ..++.+++-|.+|+.||+.++.. +
T Consensus 243 -~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDletg~~-----------~-------------- 294 (423)
T KOG0313|consen 243 -REKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLETGGL-----------K-------------- 294 (423)
T ss_pred -hhhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEeecccc-----------e--------------
Confidence 000111111122334568899999998 4 77899999999999999966420 0
Q ss_pred EEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceE
Q 001538 261 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 340 (1057)
Q Consensus 261 ~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~ 340 (1057)
..+ .+..
T Consensus 295 ~~~------------------~~~k------------------------------------------------------- 301 (423)
T KOG0313|consen 295 STL------------------TTNK------------------------------------------------------- 301 (423)
T ss_pred eee------------------ecCc-------------------------------------------------------
Confidence 000 0000
Q ss_pred EEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCC
Q 001538 341 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 420 (1057)
Q Consensus 341 lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (1057)
.++|+.
T Consensus 302 ---------------------------------------------sl~~i~----------------------------- 307 (423)
T KOG0313|consen 302 ---------------------------------------------SLNCIS----------------------------- 307 (423)
T ss_pred ---------------------------------------------ceeEee-----------------------------
Confidence 001111
Q ss_pred CCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-
Q 001538 421 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS- 499 (1057)
Q Consensus 421 ~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~- 499 (1057)
..+..++|++|+.|..+|+||.+.+. +++....+.||+.-|+++.|+|...
T Consensus 308 --------------------~~~~~~Ll~~gssdr~irl~DPR~~~--------gs~v~~s~~gH~nwVssvkwsp~~~~ 359 (423)
T KOG0313|consen 308 --------------------YSPLSKLLASGSSDRHIRLWDPRTGD--------GSVVSQSLIGHKNWVSSVKWSPTNEF 359 (423)
T ss_pred --------------------cccccceeeecCCCCceeecCCCCCC--------CceeEEeeecchhhhhheecCCCCce
Confidence 11222479999999999999998775 2333345669999999999999776
Q ss_pred eEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEE
Q 001538 500 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 579 (1057)
Q Consensus 500 ~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~v 579 (1057)
.|++|+.|+++++||++.... |+..+.+|...|.++.|+. +..+++|+.|.+|++
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~------------------------plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKA------------------------PLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRI 414 (423)
T ss_pred EEEEEecCCeEEEEEeccCCC------------------------cceeeccCCceEEEEeccC-CceEEeccCcceEEE
Confidence 578999999999999986542 1235668999999999985 459999999999998
Q ss_pred EeC
Q 001538 580 LDM 582 (1057)
Q Consensus 580 wDi 582 (1057)
+.-
T Consensus 415 ~~~ 417 (423)
T KOG0313|consen 415 FKG 417 (423)
T ss_pred ecc
Confidence 753
No 71
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=1.4e-17 Score=188.64 Aligned_cols=515 Identities=14% Similarity=0.164 Sum_probs=293.0
Q ss_pred ccCCcEEEEcCCCeEEEEEcCCCCC-----eeEEEEEc-CCcEEEE-EeCCCcEEEEECCCCc--eeeeecC-CCCEEEE
Q 001538 4 CRDGRIKVIGGDGIEGLLISPSQLP-----YKNLEFLQ-NQGFLIS-ITNDNEIQVWSLESRS--LACCLKW-ESNITAF 73 (1057)
Q Consensus 4 t~dG~I~v~g~~~~e~~~~~~~~~~-----v~~L~F~~-~~~~Lvs-~s~d~~I~VWdl~s~~--~l~tl~~-~~~Ita~ 73 (1057)
..||.|.+|..++-++.+.....-. -.+|++++ ++.+|.+ ++.+..|.++.-...+ .+..+.. ..-|..+
T Consensus 118 ~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl 197 (764)
T KOG1063|consen 118 AADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSL 197 (764)
T ss_pred ccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhh
Confidence 4789999999877665543322211 23577777 4445554 4466677777755433 3555543 3577777
Q ss_pred EEecCCc---EEEEEccCCcEEEEEEeCCC--C------cee---c---------cCcccchhhhhhhcCCCCCCCCCeE
Q 001538 74 SVISGSH---FMYIGDENGLMSVIKYDADE--G------KLF---Q---------LPYNISADALSEKAGFPLLSHQPVV 130 (1057)
Q Consensus 74 ~~sp~~~---~l~vG~~~G~v~v~~~d~~~--~------~l~---~---------~~~~i~~~~~~~~~g~~~~~~~~V~ 130 (1057)
++...+. +++++++|..|++|++-..+ . .++ . ..|+|... + +..+|...|.
T Consensus 198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e----a--ll~GHeDWV~ 271 (764)
T KOG1063|consen 198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE----A--LLMGHEDWVY 271 (764)
T ss_pred hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh----h--hhcCcccceE
Confidence 7765443 78899999999999975433 1 000 0 00222211 1 2347889999
Q ss_pred EEEeCcCCCCCeEEEEECCCEEEEEEccCCe--EEE--EecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEE
Q 001538 131 GVLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 206 (1057)
Q Consensus 131 sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~--~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ 206 (1057)
++.||| .+-.||+++.|.++.+|-..+.. .+. +++. .||+ ........
T Consensus 272 sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe----------------~gg~----------a~GF~g~l 323 (764)
T KOG1063|consen 272 SVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE----------------VGGS----------AGGFWGGL 323 (764)
T ss_pred EEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeec----------------cccc----------ccceeeEE
Confidence 999999 67779999999999999887652 221 2221 1111 44577889
Q ss_pred EecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCC
Q 001538 207 WASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDE 286 (1057)
Q Consensus 207 ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~ 286 (1057)
|+ ||++.|++-+..|-.++|...+.. .-........|...|..+.|.. .|..|++.|.|
T Consensus 324 w~-~n~~~ii~~g~~Gg~hlWkt~d~~------------~w~~~~~iSGH~~~V~dv~W~p--------sGeflLsvs~D 382 (764)
T KOG1063|consen 324 WS-PNSNVIIAHGRTGGFHLWKTKDKT------------FWTQEPVISGHVDGVKDVDWDP--------SGEFLLSVSLD 382 (764)
T ss_pred Ec-CCCCEEEEecccCcEEEEeccCcc------------ceeeccccccccccceeeeecC--------CCCEEEEeccc
Confidence 99 999999998899999999832211 1111122344667789999964 34466666666
Q ss_pred CCCcceEEEEEcCccc-----ccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccc-hhh
Q 001538 287 IGSEEVLTVLSLEWSS-----GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNAS-LTT 360 (1057)
Q Consensus 287 ~~~~~~ltvl~l~~~~-----~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~-~~~ 360 (1057)
+.-++.. .|.. ++.-|+ ++ ...+..+.+++. +..++...+..-+++|+... +..
T Consensus 383 ----QTTRlFa-~wg~q~~wHEiaRPQ------iH-GyDl~c~~~vn~--------~~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 383 ----QTTRLFA-RWGRQQEWHEIARPQ------IH-GYDLTCLSFVNE--------DLQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred ----cceeeec-ccccccceeeecccc------cc-cccceeeehccC--------CceeeecccceeeeeecCcHHHHH
Confidence 2222221 2310 011111 11 111222222221 11222223334456665321 111
Q ss_pred hhcccCC--CCCCCCcccccccCCC---CCcceEEEEEeccCCCCchhhhHHHHhhcc---ccCCCC---CCCCCcCC--
Q 001538 361 LLSQQEK--KPSVCPVEFPGVIPIS---DPIMTVAEFMLLPFGGHSSKGLSEIATFTK---LHSSHT---QAGHIKWP-- 427 (1057)
Q Consensus 361 ~l~~~~~--~~~~~~~~~~~~l~~~---~~~it~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~---~~~~~~wp-- 427 (1057)
.+..-.+ .......+....+|.+ ..++.-- ....+.....|.+...... ...+++ +...+.||
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~----e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG----ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCccc----ccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 1110000 0000001111111111 0000000 0000000000111000000 000111 12345566
Q ss_pred --CCCCCCCCCCccccCCCCcEEEEEeCCC-----cEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCe
Q 001538 428 --LSGGVPSPVPITKCHSVDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS 500 (1057)
Q Consensus 428 --l~Gg~~~~~~~~~~~~~~~~liTG~~DG-----tVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~ 500 (1057)
+.|+-.-+..+ ..++++++++|+.... -|++|+...-. ++ -++.+|..-|+.++|+||+++
T Consensus 519 ~KLYGHGyEv~~l-~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~---------~~--~~L~~HsLTVT~l~FSpdg~~ 586 (764)
T KOG1063|consen 519 HKLYGHGYEVYAL-AISPTGNLIASACKSSLKEHAVIRLWNTANWL---------QV--QELEGHSLTVTRLAFSPDGRY 586 (764)
T ss_pred HHhccCceeEEEE-EecCCCCEEeehhhhCCccceEEEEEeccchh---------hh--heecccceEEEEEEECCCCcE
Confidence 55665554444 5789999999986443 48999876532 11 134589999999999999999
Q ss_pred EEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 001538 501 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 580 (1057)
Q Consensus 501 Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vw 580 (1057)
|++.+.|.++.+|....+..... -| .....|+.-|.+..|+|+++++|+++.|.+|+||
T Consensus 587 LLsvsRDRt~sl~~~~~~~~~e~------------------~f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIKDEF------------------RF---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred EEEeecCceEEeeeeecccchhh------------------hh---ccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 99999999999999854322100 01 2356799999999999999999999999999999
Q ss_pred eCCCC--eEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCC-CcEEEEEecCCeEEEEeC
Q 001538 581 DMNLL--SVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPA-EEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 581 Di~~~--~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d-~~~L~sgt~dg~i~v~d~ 649 (1057)
..... +.+.... ...++.+|++++|.+... ++ +.++++|...|.|.+|..
T Consensus 646 ~~~~~~d~~i~~~a-~~~~~~aVTAv~~~~~~~------------------~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 646 EEPDLRDKYISRFA-CLKFSLAVTAVAYLPVDH------------------NEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred eccCchhhhhhhhc-hhccCCceeeEEeecccc------------------ccccceEEEEecccEEEEEec
Confidence 99776 3333221 224789999999984322 23 447899999999999974
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=9.9e-19 Score=191.60 Aligned_cols=162 Identities=15% Similarity=0.221 Sum_probs=116.7
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccce
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
.+.++|++.||++||||+.... .++.++++... .+...+++.++|++|+.++|.|..||.|.+|+.........
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~----~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~- 354 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPA----GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV- 354 (641)
T ss_pred ccceEEecCCCcEEEEecCCch-hheeEEeeccC----CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-
Confidence 4578999999999999997654 22333332211 25667899999999999999999999999999743211101
Q ss_pred eeeecCCCceEEeccCCcceeeEEEeeCCC--CeEEEEEcCCCCEEEEEeCCceEEEEeCCCCe-EEEEeecCCCCCCCe
Q 001538 525 LFVLETKSEVHALPEGKISLCRAVFSLVNS--PVRALQFTSSGAKLAVGFECGRVAVLDMNLLS-VLFFTDDISGSSSPI 601 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~--~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~-~l~~~~~~~g~~~~V 601 (1057)
..+-.+|.. .|+||+||+||++|++-+.|++++|||+++.+ .|+....+. ..-+-
T Consensus 355 ---------------------~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~ 412 (641)
T KOG0772|consen 355 ---------------------MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-TPFPG 412 (641)
T ss_pred ---------------------eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-ccCCC
Confidence 113346766 89999999999999999999999999998764 343322111 23456
Q ss_pred EEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEec------CCeEEEEeCCCcceee
Q 001538 602 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK------DAKISIVGGSSENMIS 656 (1057)
Q Consensus 602 ~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~------dg~i~v~d~~tg~~i~ 656 (1057)
+.++|+ |+.++|++|+. .|++.+||..|.+.+.
T Consensus 413 tdc~FS----------------------Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 413 TDCCFS----------------------PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred CccccC----------------------CCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 778888 89999999874 3667777766654443
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=2.5e-19 Score=195.75 Aligned_cols=159 Identities=12% Similarity=0.211 Sum_probs=132.3
Q ss_pred CCCCeeEEEEEc-CCcEEEEEeCCCcEEEEECCC-CceeeeecCC-CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCC
Q 001538 25 SQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES-RSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 101 (1057)
Q Consensus 25 ~~~~v~~L~F~~-~~~~Lvs~s~d~~I~VWdl~s-~~~l~tl~~~-~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~ 101 (1057)
+.-.|.+++|.| .+-.|++++.|+.|+|||+.. +++++++..+ ..|.++++++++..+++++-|+.+++|+ .++|
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD--tETG 290 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD--TETG 290 (503)
T ss_pred CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec--cccc
Confidence 455799999999 666788999999999999987 8899999755 6899999999999999999999888775 5556
Q ss_pred ceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCC
Q 001538 102 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 181 (1057)
Q Consensus 102 ~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p 181 (1057)
+.. .+.. ....+.|+.|+|++ .+.+++|..|+.|+.||++++++++.... |
T Consensus 291 ~~~---~~f~-------------~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~---------h--- 341 (503)
T KOG0282|consen 291 QVL---SRFH-------------LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDR---------H--- 341 (503)
T ss_pred eEE---EEEe-------------cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHh---------h---
Confidence 554 1111 13468999999964 57899999999999999999998765443 2
Q ss_pred CCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 182 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
-+.|..+.|- ++|+++++.++|++++||+...+
T Consensus 342 -----------------Lg~i~~i~F~-~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 342 -----------------LGAILDITFV-DEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred -----------------hhheeeeEEc-cCCceEeeeccCccEEEEEcCCC
Confidence 5789999999 99999999999999999998553
No 74
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2.1e-18 Score=172.47 Aligned_cols=151 Identities=20% Similarity=0.271 Sum_probs=117.1
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
.++++|+.|.++|+||-+...+.++.+++ .....|.+|..+ ..+++.|+.||+||.||++.......
T Consensus 114 SVv~SgsfD~s~r~wDCRS~s~ePiQild---------ea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD-- 180 (307)
T KOG0316|consen 114 SVVASGSFDSSVRLWDCRSRSFEPIQILD---------EAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD-- 180 (307)
T ss_pred eEEEeccccceeEEEEcccCCCCccchhh---------hhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh--
Confidence 37899999999999999887766665554 223468777764 56899999999999999987543211
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCe--EE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI--IS 603 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V--~s 603 (1057)
--..||+|++||+||+.+.+|+.|++|++.|-.+++++..+. ||...= ..
T Consensus 181 -------------------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk---Ghkn~eykld 232 (307)
T KOG0316|consen 181 -------------------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK---GHKNMEYKLD 232 (307)
T ss_pred -------------------------hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc---ccccceeeee
Confidence 135689999999999999999999999999999999986543 355422 22
Q ss_pred EEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecCc
Q 001538 604 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSP 659 (1057)
Q Consensus 604 l~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~ 659 (1057)
.++. .....+++|+.||.|.+||+..+.++....
T Consensus 233 c~l~----------------------qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 233 CCLN----------------------QSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeec----------------------ccceeEEeccCCceEEEEEeccceeeeeec
Confidence 3333 335668999999999999999998887663
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.3e-18 Score=175.91 Aligned_cols=267 Identities=14% Similarity=0.125 Sum_probs=196.2
Q ss_pred CCCcEEEEECC-CCc--eeeeecCCCCEEEEEEecCC-cEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCC
Q 001538 46 NDNEIQVWSLE-SRS--LACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 121 (1057)
Q Consensus 46 ~d~~I~VWdl~-s~~--~l~tl~~~~~Ita~~~sp~~-~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~ 121 (1057)
..|++.|.++. .+. .+.++.++..+..+++++.. +.+++++.||++++|...... .-|.-
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-------~Pi~~--------- 99 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-------KPIHK--------- 99 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-------cchhH---------
Confidence 35889999985 333 24555677889999999875 467888999999888733221 11111
Q ss_pred CCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCC
Q 001538 122 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 201 (1057)
Q Consensus 122 ~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 201 (1057)
-++|...|.++.|++. .+..+++++.||+|+|||....+.+++|.+ | ..-
T Consensus 100 ~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g---------h--------------------~~~ 149 (311)
T KOG0277|consen 100 FKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQTFNG---------H--------------------NSC 149 (311)
T ss_pred HHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCCcceEeecC---------C--------------------ccE
Confidence 1356778999999997 466799999999999999999999999887 3 778
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEE
Q 001538 202 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFV 281 (1057)
Q Consensus 202 Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv 281 (1057)
|.++.|++..++.+++++.||++++||+.... ..
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-------------------------------------------k~--- 183 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-------------------------------------------KF--- 183 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCC-------------------------------------------ce---
Confidence 99999996678999999999999999984310 00
Q ss_pred ecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhh
Q 001538 282 YGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTL 361 (1057)
Q Consensus 282 ~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~ 361 (1057)
+.
T Consensus 184 -----------~~------------------------------------------------------------------- 185 (311)
T KOG0277|consen 184 -----------MS------------------------------------------------------------------- 185 (311)
T ss_pred -----------eE-------------------------------------------------------------------
Confidence 00
Q ss_pred hcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCcccc
Q 001538 362 LSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKC 441 (1057)
Q Consensus 362 l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~ 441 (1057)
++.|...++|+.++
T Consensus 186 ------------------i~ah~~Eil~cdw~------------------------------------------------ 199 (311)
T KOG0277|consen 186 ------------------IEAHNSEILCCDWS------------------------------------------------ 199 (311)
T ss_pred ------------------EEeccceeEeeccc------------------------------------------------
Confidence 00022223333221
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecCCCC
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
.-+.++++||+.|+.||.||+..-. ++++ ++.+|..+|..|.|+|-.. .||+++.|-+++||++..+..
T Consensus 200 ky~~~vl~Tg~vd~~vr~wDir~~r--------~pl~--eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 200 KYNHNVLATGGVDNLVRGWDIRNLR--------TPLF--ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred ccCCcEEEecCCCceEEEEehhhcc--------ccce--eecCCceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 1123489999999999999998654 2333 2358999999999999765 789999999999999976533
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcC-CCCEEEEEeCCceEEEEeC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDM 582 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~-~g~~lA~G~~dG~V~vwDi 582 (1057)
.. .+...|+.=|..+-||+ ++.++|+.+.|+.+.||+-
T Consensus 270 ~~------------------------e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 AI------------------------ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hh------------------------hhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 21 13345777788888887 6779999999999999983
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.81 E-value=4.1e-19 Score=184.00 Aligned_cols=161 Identities=17% Similarity=0.257 Sum_probs=139.2
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec---------CCCCEEEEEEecCCcEEEEEccCCcEEEEE
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK---------WESNITAFSVISGSHFMYIGDENGLMSVIK 95 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~---------~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~ 95 (1057)
.+..+.+-+|+||+.||++++.||.|+|||..+|++..-++ .+..|.|+.|+.++..+++|..||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 45668899999999999999999999999999998865543 357899999999999999999999999999
Q ss_pred EeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccC
Q 001538 96 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 175 (1057)
Q Consensus 96 ~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~ 175 (1057)
+.... ++ .. +.+.|...|+|+.|+- ++.++++++-|-++++..+++|+++..|.+
T Consensus 292 i~tG~-Cl-------Rr--------FdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKEfrG------- 346 (508)
T KOG0275|consen 292 IETGQ-CL-------RR--------FDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKEFRG------- 346 (508)
T ss_pred Eecch-HH-------HH--------hhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHHhcC-------
Confidence 86532 12 11 2345677899999997 577899999999999999999999988877
Q ss_pred CccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 176 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 176 ~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
| ...|..+.|. +||.+|++++.||+|++|+..+++
T Consensus 347 --H--------------------sSyvn~a~ft-~dG~~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 347 --H--------------------SSYVNEATFT-DDGHHIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred --c--------------------cccccceEEc-CCCCeEEEecCCccEEEecCcchh
Confidence 3 7889999999 999999999999999999998764
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.81 E-value=2.8e-17 Score=167.48 Aligned_cols=158 Identities=16% Similarity=0.276 Sum_probs=128.6
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC-CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
+..|++.+.|..+|..|++++.|.++.||--..|+.+.++.. .+.|+|+.++-++++|++|+.|.++++|.+.. |+.
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t--Gk~ 86 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET--GKQ 86 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC--CcE
Confidence 557899999999999999999999999999999999999975 48999999999999999999999999987544 443
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC-----CEEEEEEccCCe-------EEEEecCCcc
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-----ALVILWDVSEAQ-------IIFVGGGKDL 171 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d-----G~I~lWdl~~~~-------~~~~~~~~~~ 171 (1057)
. +.+. ...+|..+.|++ .|++++...++ +.|.++|++... +......
T Consensus 87 l---a~~k-------------~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t--- 145 (327)
T KOG0643|consen 87 L---ATWK-------------TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT--- 145 (327)
T ss_pred E---EEee-------------cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---
Confidence 3 2222 246899999999 68876666553 578899987432 2222221
Q ss_pred cccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 172 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
...+++++.|. |-+..|++|++||.|..||+.++
T Consensus 146 --------------------------~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 146 --------------------------PDSKITSALWG-PLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred --------------------------Cccceeeeeec-ccCCEEEEecCCCcEEEEEcccC
Confidence 16789999999 99999999999999999999765
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=5.7e-18 Score=201.77 Aligned_cols=328 Identities=13% Similarity=0.195 Sum_probs=213.7
Q ss_pred CCCeeEEEEEcCCcEEEEEe--CCCcEEEEECCC------------Cceeeee-cCCCCEEEEEEecCCcEEEEEccCCc
Q 001538 26 QLPYKNLEFLQNQGFLISIT--NDNEIQVWSLES------------RSLACCL-KWESNITAFSVISGSHFMYIGDENGL 90 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s--~d~~I~VWdl~s------------~~~l~tl-~~~~~Ita~~~sp~~~~l~vG~~~G~ 90 (1057)
...|-.+..+|++..+++++ .|+.+.||+.+. .+.++++ .+.+.|+|+-|+|+|.|||+|++|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 44588899999999999999 899999999653 1234444 35689999999999999999999999
Q ss_pred EEEEEEeCC-CCceecc--CcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEec
Q 001538 91 MSVIKYDAD-EGKLFQL--PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 167 (1057)
Q Consensus 91 v~v~~~d~~-~~~l~~~--~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~ 167 (1057)
|.||.++.. .+.+-.. ...-...|+ .+-....|.+.|..+.|+| ++.+|++++-|.+|.|||.++.+.+.++.
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk--~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWK--VVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred EEEeeecccCCcccccccccccccceee--EEEEEecCCCccceeccCC--CccEEEEecccceEEEEccccceeeeeee
Confidence 999998741 0000000 000001111 1112356889999999999 67889999999999999999999988887
Q ss_pred CCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcce
Q 001538 168 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVV 247 (1057)
Q Consensus 168 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~ 247 (1057)
+ | ...|..+.|. |-|++||+-+.|++|++|++.+........+ |.
T Consensus 169 ~---------H--------------------~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~----pf- 213 (942)
T KOG0973|consen 169 G---------H--------------------QSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITK----PF- 213 (942)
T ss_pred c---------c--------------------cccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeecc----ch-
Confidence 7 3 7789999999 9999999999999999999766421110000 00
Q ss_pred eeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEe
Q 001538 248 KLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILL 327 (1057)
Q Consensus 248 kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~ 327 (1057)
.......-+..+.|++ +|..+++.-.- +++
T Consensus 214 ----~~~~~~T~f~RlSWSP--------DG~~las~nA~-------------------------------n~~------- 243 (942)
T KOG0973|consen 214 ----EESPLTTFFLRLSWSP--------DGHHLASPNAV-------------------------------NGG------- 243 (942)
T ss_pred ----hhCCCcceeeecccCC--------CcCeecchhhc-------------------------------cCC-------
Confidence 0011122345666754 33333321110 000
Q ss_pred ecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHH
Q 001538 328 SSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSE 407 (1057)
Q Consensus 328 p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~ 407 (1057)
...+.+-+.| .|+ .-..+-+|+.+++|++|.+- .+
T Consensus 244 -----------~~~~~IieR~---tWk---------------------~~~~LvGH~~p~evvrFnP~--------lf-- 278 (942)
T KOG0973|consen 244 -----------KSTIAIIERG---TWK---------------------VDKDLVGHSAPVEVVRFNPK--------LF-- 278 (942)
T ss_pred -----------cceeEEEecC---Cce---------------------eeeeeecCCCceEEEEeChH--------Hh--
Confidence 0011111111 121 11234568889999999531 11
Q ss_pred HHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCC
Q 001538 408 IATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA 487 (1057)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~ 487 (1057)
....+++ .... ....-.++++|+.|++|-||....++ ++.+.. +++ +.
T Consensus 279 --e~~~~ng---------------~~~~-----~~~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~-~lf-------~~ 326 (942)
T KOG0973|consen 279 --ERNNKNG---------------TSTQ-----PNCYYCIAAVGSQDRSLSVWNTALPR--PLFVIH-NLF-------NK 326 (942)
T ss_pred --ccccccC---------------CccC-----CCcceEEEEEecCCccEEEEecCCCC--chhhhh-hhh-------cC
Confidence 1111111 1100 00111478999999999999986655 555443 222 34
Q ss_pred CEEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001538 488 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 488 ~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
+|..++|+|||..|.+++.||+|.++.|+...
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 89999999999999999999999999998643
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=5.8e-18 Score=197.21 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=111.7
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
+++|+|+-||.||||++...+... .. ++. .-|++++|+|||+..++|+.+|.+++|+....+.....+
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~---W~------Dl~---~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVD---WN------DLR---DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred CcEeecccccceEEeecCcCeeEe---eh------hhh---hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 478999999999999998765211 11 121 379999999999999999999999999987765532221
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC-CEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g-~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl 604 (1057)
|....+- . ..|. .||.++|.|.. ..|.|.+.|..|+|+|.++..+++.+..+...+ .=++.
T Consensus 491 -----------I~~~~~K----k-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~-SQ~~A 552 (712)
T KOG0283|consen 491 -----------IRLHNKK----K-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS-SQISA 552 (712)
T ss_pred -----------EeeccCc----c-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC-cceee
Confidence 1110000 0 1133 89999999743 358899999999999998888776665432222 23455
Q ss_pred EEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 605 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 605 ~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
+|. .||++|++++.|..|.+|+.+.
T Consensus 553 sfs----------------------~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 553 SFS----------------------SDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eEc----------------------cCCCEEEEeecCceEEEEeCCC
Confidence 676 6899999999999999999754
No 80
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.6e-17 Score=169.30 Aligned_cols=165 Identities=15% Similarity=0.243 Sum_probs=117.5
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCce------eeeecCCCCEEEEEEecCCcEEEEEccCCc-EEEEEEe
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL------ACCLKWESNITAFSVISGSHFMYIGDENGL-MSVIKYD 97 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~------l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~-v~v~~~d 97 (1057)
++..|++|+|+.||.+|++++.|++|+||+++.-.. ..++.. +.-|.+.|.|+.+-+++...+|+ ++|+.++
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-CCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 456799999999999999999999999999876221 222222 36799999999998888887775 4444443
Q ss_pred C-CCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCC
Q 001538 98 A-DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDG 176 (1057)
Q Consensus 98 ~-~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~ 176 (1057)
- .+|.+.. .-++++.+ .+++.|..+|..|-..- .++++++++.|-.|.|||++ |+++.+....
T Consensus 164 K~~dG~~~~--~~v~~D~~----~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-Gq~L~~idtn------- 227 (420)
T KOG2096|consen 164 KKTDGSGSH--HFVHIDNL----EFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-GQLLQSIDTN------- 227 (420)
T ss_pred ecccCCCCc--cccccccc----ccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-Cceeeeeccc-------
Confidence 2 2233331 12233211 14455666777766654 68889999999999999999 8888766541
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeC
Q 001538 177 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 229 (1057)
Q Consensus 177 ~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~ 229 (1057)
...-+-++.+ |||++|++..-.-++++|.+
T Consensus 228 ----------------------q~~n~~aavS-P~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 228 ----------------------QSSNYDAAVS-PDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred ----------------------cccccceeeC-CCCcEEEEecCCCCceEEEE
Confidence 2233455677 99999999988888999876
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=3.2e-17 Score=178.53 Aligned_cols=295 Identities=16% Similarity=0.250 Sum_probs=197.3
Q ss_pred CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCC----C-CCCCCCeEEEEeCcCCCC
Q 001538 66 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF----P-LLSHQPVVGVLPHPNSSG 140 (1057)
Q Consensus 66 ~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~----~-~~~~~~V~sI~~sP~d~g 140 (1057)
+.-.|+|++++|+..+.|.++.+| .|..|+...++-. .|.++.+...++.+. + +.|...+.+++.+| +|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g--~i~kw~v~tgk~~--~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~--Dg 214 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDG--TILKWDVLTGKKD--RYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS--DG 214 (479)
T ss_pred ccCcceEEEeeccccceeecCCCc--ceeeeehhcCccc--ccccccchhhhhccCCCCcccccccceeEEEEEcC--CC
Confidence 446799999999999999999999 5666666655433 466665422222222 2 25678899999999 79
Q ss_pred CeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001538 141 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 220 (1057)
Q Consensus 141 ~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~ 220 (1057)
++|++|..|..|.|||..+.+.++.|.+ | ...|.+++|- .....+.+++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~g---------h--------------------r~~V~~L~fr-~gt~~lys~s~ 264 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKG---------H--------------------RGAVSSLAFR-KGTSELYSASA 264 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccc---------c--------------------ccceeeeeee-cCccceeeeec
Confidence 9999999999999999999999988776 3 8899999998 77788999999
Q ss_pred CCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCc
Q 001538 221 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 300 (1057)
Q Consensus 221 DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~ 300 (1057)
|++|++|++......... ++ |..-|..+ . .-...+.+..||.|
T Consensus 265 Drsvkvw~~~~~s~vetl--------------yG-Hqd~v~~I--d------aL~reR~vtVGgrD-------------- 307 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYVETL--------------YG-HQDGVLGI--D------ALSRERCVTVGGRD-------------- 307 (479)
T ss_pred CCceEEEehhHhHHHHHH--------------hC-Cccceeee--c------hhcccceEEecccc--------------
Confidence 999999999643211000 11 22223332 0 11123444444444
Q ss_pred ccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCccccccc
Q 001538 301 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 380 (1057)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l 380 (1057)
.++.+|+.. .. .+ ...
T Consensus 308 -----------------------------------------------rT~rlwKi~-------ee--------sq--lif 323 (479)
T KOG0299|consen 308 -----------------------------------------------RTVRLWKIP-------EE--------SQ--LIF 323 (479)
T ss_pred -----------------------------------------------ceeEEEecc-------cc--------ce--eee
Confidence 334444310 00 00 001
Q ss_pred CCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEE
Q 001538 381 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIW 460 (1057)
Q Consensus 381 ~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriW 460 (1057)
..+...+-|++|+.+ ..++||+.||+|-+|
T Consensus 324 rg~~~sidcv~~In~--------------------------------------------------~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 324 RGGEGSIDCVAFIND--------------------------------------------------EHFVSGSDNGSIALW 353 (479)
T ss_pred eCCCCCeeeEEEecc--------------------------------------------------cceeeccCCceEEEe
Confidence 113445666666321 147999999999999
Q ss_pred ecCCCceeEEeeccc--ceeee-eecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEe
Q 001538 461 DATYPVFKLICALDA--EVQGI-EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHAL 537 (1057)
Q Consensus 461 d~~~~~l~~l~~l~~--~v~~i-~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i 537 (1057)
++.... ++++.+. .+... ....++.-|++|+..|.+.++|+|+.+|.|+||.+..+....+
T Consensus 354 s~~KKk--plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~-------------- 417 (479)
T KOG0299|consen 354 SLLKKK--PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN-------------- 417 (479)
T ss_pred eecccC--ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc--------------
Confidence 998876 4444332 21110 1123445899999999999999999999999999987643211
Q ss_pred ccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEE
Q 001538 538 PEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG 571 (1057)
Q Consensus 538 ~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G 571 (1057)
++..++ -.+-|++|+|+++|+++++|
T Consensus 418 -------~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 418 -------LLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred -------eeeecc-cccEEEEEEEccCCCEEEEe
Confidence 112222 46789999999999977666
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=7.6e-18 Score=196.26 Aligned_cols=161 Identities=15% Similarity=0.182 Sum_probs=106.2
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeee-cC----------CCCEEEEEEec---CCcEE--EEEcc
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KW----------ESNITAFSVIS---GSHFM--YIGDE 87 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl-~~----------~~~Ita~~~sp---~~~~l--~vG~~ 87 (1057)
.+...|.+|.|+++|.|||+++.|+-|+||.+..-.....- .. .+.+..+.... .+... -.+.+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 46778999999999999999999999999998653321100 00 01111111111 00000 00001
Q ss_pred CCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEec
Q 001538 88 NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 167 (1057)
Q Consensus 88 ~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~ 167 (1057)
...+ + ++.. .+.+.. +..-.-++|...|..|.|+- .++||+++.|.+|+||++....++++|.
T Consensus 345 s~~~-~--~p~~-------~f~f~e----kP~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 345 SPCV-L--LPLK-------AFVFSE----KPFCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred Cccc-c--CCCc-------cccccc----cchhhhhccchhheeccccc---CCeeEeccccccEEeecCCCcceeeEEe
Confidence 1100 0 0000 011100 00001157889999999996 4589999999999999999999999998
Q ss_pred CCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 168 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 168 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
+ ..-|||+.|++-|.+++++|+-||.|+||++..
T Consensus 408 H------------------------------ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d 441 (712)
T KOG0283|consen 408 H------------------------------NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD 441 (712)
T ss_pred c------------------------------CCeeEEEEecccCCCcEeecccccceEEeecCc
Confidence 6 778999999966889999999999999999943
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.79 E-value=4.6e-18 Score=171.35 Aligned_cols=287 Identities=18% Similarity=0.178 Sum_probs=203.5
Q ss_pred CCCCCeEEEEeCc-CCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCe
Q 001538 124 LSHQPVVGVLPHP-NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 202 (1057)
Q Consensus 124 ~~~~~V~sI~~sP-~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~V 202 (1057)
+|..||+.++|+| ..+|-.|++++-||.--|-+=.+|..+.+|.+ | .+.|
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg---------h--------------------kgav 62 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG---------H--------------------KGAV 62 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec---------c--------------------Ccce
Confidence 4677999999998 44676677788899877888889999999988 4 8899
Q ss_pred EEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEe
Q 001538 203 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVY 282 (1057)
Q Consensus 203 tsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~ 282 (1057)
++.+.. .|....+++..|=+-++||.-+|+. +.+-.|+.-|..++++ +++..+++
T Consensus 63 w~~~l~-~na~~aasaaadftakvw~a~tgde----------------lhsf~hkhivk~~af~--------~ds~~llt 117 (334)
T KOG0278|consen 63 WSATLN-KNATRAASAAADFTAKVWDAVTGDE----------------LHSFEHKHIVKAVAFS--------QDSNYLLT 117 (334)
T ss_pred eeeecC-chhhhhhhhcccchhhhhhhhhhhh----------------hhhhhhhheeeeEEec--------ccchhhhc
Confidence 999999 8999999999999999999988752 1122234344555443 34555666
Q ss_pred cCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhh
Q 001538 283 GGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 362 (1057)
Q Consensus 283 gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l 362 (1057)
||.+ . -|++|| +
T Consensus 118 gg~e----k---------------------------------------------------------llrvfd-------l 129 (334)
T KOG0278|consen 118 GGQE----K---------------------------------------------------------LLRVFD-------L 129 (334)
T ss_pred cchH----H---------------------------------------------------------Hhhhhh-------c
Confidence 6655 2 223333 2
Q ss_pred cccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccC
Q 001538 363 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCH 442 (1057)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~ 442 (1057)
..++ .-|..+..|...|..+- +.
T Consensus 130 n~p~--------App~E~~ghtg~Ir~v~-------------------------------------------------wc 152 (334)
T KOG0278|consen 130 NRPK--------APPKEISGHTGGIRTVL-------------------------------------------------WC 152 (334)
T ss_pred cCCC--------CCchhhcCCCCcceeEE-------------------------------------------------Ee
Confidence 1111 11122222322222221 12
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcc
Q 001538 443 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 522 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~ 522 (1057)
...+.|++...|++||+||..++... .. ++ .+.+|+++.++++|++|.++.. +.|.+|+...-...
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTgt~v--~s-------L~---~~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~l- 218 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTGTEV--QS-------LE---FNSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLL- 218 (334)
T ss_pred ccCceEEeeccCCceEEEEeccCcEE--EE-------Ee---cCCCCcceeeccCCCEEEEecC-ceeEEeccccccce-
Confidence 22235666699999999999988621 11 12 2358999999999998877754 57999997542211
Q ss_pred ceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeE
Q 001538 523 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 602 (1057)
Q Consensus 523 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~ 602 (1057)
.-..-+..|++-+++|+-.+++.|++|+.++.+|..++.-+-.. ..||-+||-
T Consensus 219 -------------------------Ks~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVh 271 (334)
T KOG0278|consen 219 -------------------------KSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVH 271 (334)
T ss_pred -------------------------eeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceE
Confidence 11123567899999999999999999999999999999777553 257999999
Q ss_pred EEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCc
Q 001538 603 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 652 (1057)
Q Consensus 603 sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg 652 (1057)
|+.|+ |||..-++|+.||+|++|....+
T Consensus 272 cVrFS----------------------PdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 272 CVRFS----------------------PDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEEC----------------------CCCceeeccCCCceEEEEEecCC
Confidence 99999 99999999999999999964433
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=4.5e-17 Score=175.72 Aligned_cols=159 Identities=16% Similarity=0.261 Sum_probs=132.9
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceec
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 105 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~ 105 (1057)
..++.|...+.....++++.|.++.++|..+.+++.+++.+ -.|+.+.+.++.+.+++++.|-.|+||.........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-- 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-- 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--
Confidence 35888888886567889999999999999999999999765 689999999999999999999999999864322110
Q ss_pred cCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCC
Q 001538 106 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 185 (1057)
Q Consensus 106 ~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 185 (1057)
....|..+|+.+..|| .|.+++.++.||+..+.|+++++.+.....+
T Consensus 298 ---------------~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---------------- 344 (506)
T KOG0289|consen 298 ---------------SSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDE---------------- 344 (506)
T ss_pred ---------------ccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeec----------------
Confidence 2345678999999999 6899999999999999999999887665430
Q ss_pred CCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 186 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 186 ~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
...-.++++.|| |||..+.+|..||.|+|||+.++
T Consensus 345 -----------~s~v~~ts~~fH-pDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 345 -----------TSDVEYTSAAFH-PDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred -----------cccceeEEeeEc-CCceEEeccCCCceEEEEEcCCc
Confidence 014568999999 99999999999999999999653
No 85
>PTZ00421 coronin; Provisional
Probab=99.79 E-value=1.6e-16 Score=187.65 Aligned_cols=152 Identities=11% Similarity=0.069 Sum_probs=111.6
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
++|+||+.||+|+|||+..+.. +.. +.+|...|.+++|+|++..|++|+.||.|+|||++....
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~--~~~---------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~----- 202 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKA--VEV---------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI----- 202 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeE--EEE---------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----
Confidence 4799999999999999987752 222 236777999999999999999999999999999875432
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCC-eEEEEEcCCCCEEEEEe----CCceEEEEeCCCCeE-EEEeecCCCCCC
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSP-VRALQFTSSGAKLAVGF----ECGRVAVLDMNLLSV-LFFTDDISGSSS 599 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~-ItsLa~S~~g~~lA~G~----~dG~V~vwDi~~~~~-l~~~~~~~g~~~ 599 (1057)
+..+.+|.+. +..+.|++++..+++++ .|+.|+|||++.... +..... ....
T Consensus 203 --------------------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~ 260 (493)
T PTZ00421 203 --------------------VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSS 260 (493)
T ss_pred --------------------EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCC
Confidence 1245567654 45677888876766543 579999999986543 222221 1233
Q ss_pred CeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEec-CCeEEEEeCCCcceeec
Q 001538 600 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK-DAKISIVGGSSENMISS 657 (1057)
Q Consensus 600 ~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~-dg~i~v~d~~tg~~i~~ 657 (1057)
.+....|+ +++.+|++++. |+.|++||..+++++..
T Consensus 261 ~~~~~~~d----------------------~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 261 ALFIPFFD----------------------EDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred ceEEEEEc----------------------CCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 44444555 77888888874 99999999998886643
No 86
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.78 E-value=2.5e-16 Score=178.66 Aligned_cols=510 Identities=15% Similarity=0.133 Sum_probs=287.5
Q ss_pred cEEEEcCCCeEEEEEc-CCCCCeeEEEEEcCCc---EEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEE
Q 001538 8 RIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQG---FLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFM 82 (1057)
Q Consensus 8 ~I~v~g~~~~e~~~~~-~~~~~v~~L~F~~~~~---~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l 82 (1057)
.|.||.......+... .+..+|.++.|.|... ++++++.|++|.+|.++.....+.+..+ ..+.|.++......+
T Consensus 35 ~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~ 114 (764)
T KOG1063|consen 35 AIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVM 114 (764)
T ss_pred eEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEE
Confidence 4555555444333333 3578999999998887 8999999999999999855554444333 356666666555555
Q ss_pred EEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCe-EEEEECCCEEEEEEccCCe
Q 001538 83 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR-VLIAYENALVILWDVSEAQ 161 (1057)
Q Consensus 83 ~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~-lli~~~dG~I~lWdl~~~~ 161 (1057)
.....+|.+++|+...++--+. ...++.. .+. --.|+++.| +.++. +++|+.+..|.||.-..++
T Consensus 115 ~~~~ad~~v~vw~~~~~e~~~~-~~~rf~~---k~~---------ipLcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~ 180 (764)
T KOG1063|consen 115 TCKAADGTVSVWDKQQDEVFLL-AVLRFEI---KEA---------IPLCLAALK-NNKTFLLACGGSKFVVDLYSSSADS 180 (764)
T ss_pred EeeccCceEEEeecCCCceeee-hheehhh---hhH---------hhHHHhhhc-cCCcEEEEecCcceEEEEeccCCcc
Confidence 5557899999988632220011 0111111 011 124666666 23443 4456667788888876554
Q ss_pred EE--EEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCC---CEEEEEEcCCcEEEEeCCCCCccC
Q 001538 162 II--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG---SILAVGYIDGDILLWNTSTTASTK 236 (1057)
Q Consensus 162 ~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG---~~latg~~DG~I~lWd~~~~~~~~ 236 (1057)
.. ..+.+ | ...|.++.|. .-+ .+||+++.|..|++|.+.-+....
T Consensus 181 f~~v~el~G---------H--------------------~DWIrsl~f~-~~~~~~~~laS~SQD~yIRiW~i~~~~~~~ 230 (764)
T KOG1063|consen 181 FARVAELEG---------H--------------------TDWIRSLAFA-RLGGDDLLLASSSQDRYIRIWRIVLGDDED 230 (764)
T ss_pred eeEEEEeec---------c--------------------chhhhhhhhh-ccCCCcEEEEecCCceEEEEEEEEecCCcc
Confidence 33 33333 3 7789999997 433 479999999999999886543110
Q ss_pred ------CCCCCCCCcce--------eeecc--cccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCc
Q 001538 237 ------GQQTGSRNNVV--------KLELS--SAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 300 (1057)
Q Consensus 237 ------~~~~~~~~~i~--------kl~l~--~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~ 300 (1057)
.....+..++. ++.+. ...|..-|..+.|.. +.-.||. .+.| ..+-+|.-+-
T Consensus 231 ~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-------~~~~LLS-ASaD----ksmiiW~pd~ 298 (764)
T KOG1063|consen 231 SNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-------EGLDLLS-ASAD----KSMIIWKPDE 298 (764)
T ss_pred ccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-------chhhhee-cccC----cceEEEecCC
Confidence 00001111111 11111 123677889999965 2223443 3333 2344433221
Q ss_pred cccc-ccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccc
Q 001538 301 SSGM-ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 379 (1057)
Q Consensus 301 ~~~~-~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~ 379 (1057)
..+. ....|++.+. ...+.+-+....|.. ..++.-+..|-+++|-.. + ...|. ....
T Consensus 299 ~tGiWv~~vRlGe~g-g~a~GF~g~lw~~n~--------~~ii~~g~~Gg~hlWkt~--------d--~~~w~---~~~~ 356 (764)
T KOG1063|consen 299 NTGIWVDVVRLGEVG-GSAGGFWGGLWSPNS--------NVIIAHGRTGGFHLWKTK--------D--KTFWT---QEPV 356 (764)
T ss_pred ccceEEEEEEeeccc-ccccceeeEEEcCCC--------CEEEEecccCcEEEEecc--------C--cccee---eccc
Confidence 1100 0011122211 111224444444433 245555777889998511 0 01111 1123
Q ss_pred cCCCCCcceEEEEEeccC------CCCchhhhHHHHhhccccCCCCCCCCCcCC-CCCCCCCCCCccccCCCCcEEEEEe
Q 001538 380 IPISDPIMTVAEFMLLPF------GGHSSKGLSEIATFTKLHSSHTQAGHIKWP-LSGGVPSPVPITKCHSVDRVYLAGY 452 (1057)
Q Consensus 380 l~~~~~~it~~~~~~~~~------~~~~~~~w~~~~~~~~~~~~~~~~~~~~wp-l~Gg~~~~~~~~~~~~~~~~liTG~ 452 (1057)
+++|...|+.++..+.+. .+-+.+.+.. | .++ .. +-....| +.|.--... ++-+.+..+++|.
T Consensus 357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~-w--g~q-~~---wHEiaRPQiHGyDl~c~---~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR-W--GRQ-QE---WHEIARPQIHGYDLTCL---SFVNEDLQFVSGA 426 (764)
T ss_pred cccccccceeeeecCCCCEEEEeccccceeeecc-c--ccc-cc---eeeecccccccccceee---ehccCCceeeecc
Confidence 566766777666532210 0001111100 0 000 00 0000011 333322111 2333355788888
Q ss_pred CCCcEEEEecCCCcee------------------------------EEee---cccce----ee----------------
Q 001538 453 HDGSVRIWDATYPVFK------------------------------LICA---LDAEV----QG---------------- 479 (1057)
Q Consensus 453 ~DGtVriWd~~~~~l~------------------------------~l~~---l~~~v----~~---------------- 479 (1057)
...-+|++++...... .++. -.+.. .+
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 8888999986432110 0000 00000 00
Q ss_pred ------------eeecCCCCCEEEEEEecCCCeEEEEecCc-----cEEEEEecCCCCccceeeeecCCCceEEeccCCc
Q 001538 480 ------------IEVAGSRAPVSTLSFCFINSSLAVGNEFG-----LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 542 (1057)
Q Consensus 480 ------------i~l~~~~~~V~~v~fspd~~~Lavg~~dG-----~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g 542 (1057)
-.+-||...|.+++.+|+++.+|+++... .|+||+...-..
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~---------------------- 564 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ---------------------- 564 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh----------------------
Confidence 01238999999999999999999997764 467777543211
Q ss_pred ceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEE-EEeecCCCCCCCeEEEEEeeccCcccccCCCCC
Q 001538 543 SLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL-FFTDDISGSSSPIISMTWTEFKNTHSLAKNPNH 621 (1057)
Q Consensus 543 ~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l-~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~ 621 (1057)
...+..|.-.||.|+|||||++|++.+.|.++.||........ +.+.+...|+.-|.+..|+
T Consensus 565 ---~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~-------------- 627 (764)
T KOG1063|consen 565 ---VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS-------------- 627 (764)
T ss_pred ---hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccC--------------
Confidence 1256789999999999999999999999999999998543221 2233345688889999998
Q ss_pred CCCcCCCCCCCcEEEEEecCCeEEEEeCCCc
Q 001538 622 SEREVPVNPAEEVIIVLFKDAKISIVGGSSE 652 (1057)
Q Consensus 622 ~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg 652 (1057)
|++.++++++.|.+|++|....+
T Consensus 628 --------pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 628 --------PDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred --------cccceeEEecCCceEEEEeccCc
Confidence 88999999999999999988776
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.8e-16 Score=155.06 Aligned_cols=313 Identities=14% Similarity=0.233 Sum_probs=201.9
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCC-CCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCc
Q 001538 199 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQ-TGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDG 277 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~-~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~ 277 (1057)
...|.++.|| |+|...++|+...++++--.+.-....+-. .....|.+... ..+.|+..|.+..|+. .+
T Consensus 32 sqairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k-r~khhkgsiyc~~ws~--------~g 101 (350)
T KOG0641|consen 32 SQAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK-RNKHHKGSIYCTAWSP--------CG 101 (350)
T ss_pred hhheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEee-eccccCccEEEEEecC--------cc
Confidence 6789999999 999999999999999998766543222111 11111233221 3455788999999975 67
Q ss_pred eEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeec-CCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeecc
Q 001538 278 RLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT-LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNA 356 (1057)
Q Consensus 278 ~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~-~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~ 356 (1057)
.|+.+|+++ ..+.++.|+-+...... .-+.+. +++.+.|+.++..... ...+++...-|...+|-.
T Consensus 102 eliatgsnd----k~ik~l~fn~dt~~~~g---~dle~nmhdgtirdl~fld~~~s-----~~~il~s~gagdc~iy~t- 168 (350)
T KOG0641|consen 102 ELIATGSND----KTIKVLPFNADTCNATG---HDLEFNMHDGTIRDLAFLDDPES-----GGAILASAGAGDCKIYIT- 168 (350)
T ss_pred CeEEecCCC----ceEEEEecccccccccC---cceeeeecCCceeeeEEecCCCc-----CceEEEecCCCcceEEEe-
Confidence 899999888 56778776643311110 012222 3456788887754331 124555544444444310
Q ss_pred chhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCC
Q 001538 357 SLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPV 436 (1057)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~ 436 (1057)
. .+.+ +.+ ..++.| +|+.-+.
T Consensus 169 -------d-c~~g----~~~-~a~sgh---------------------------------------------tghilal- 189 (350)
T KOG0641|consen 169 -------D-CGRG----QGF-HALSGH---------------------------------------------TGHILAL- 189 (350)
T ss_pred -------e-cCCC----Ccc-eeecCC---------------------------------------------cccEEEE-
Confidence 0 0000 001 111222 2222111
Q ss_pred CccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEec
Q 001538 437 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 516 (1057)
Q Consensus 437 ~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~ 516 (1057)
.+=.+-++++|++|.+|||||+.-+. .+.++.+...+--+ ...+|.+|+..|.|+.|++|-.|....+||++
T Consensus 190 ----yswn~~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~gl--essavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 190 ----YSWNGAMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGL--ESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred ----EEecCcEEEccCCCceEEEEeeeccc--eeeeccCcccCCCc--ccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 12233478999999999999987654 22333321111001 23589999999999999999999999999998
Q ss_pred CCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCe--EEEEeecC
Q 001538 517 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS--VLFFTDDI 594 (1057)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~--~l~~~~~~ 594 (1057)
.++. +..+..|...|.|+.|||.-.++.+|+-|..|+|-|+++.- .+-.+ ..
T Consensus 262 g~r~-------------------------iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~-vv 315 (350)
T KOG0641|consen 262 GGRM-------------------------IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM-VV 315 (350)
T ss_pred CCce-------------------------eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE-EE
Confidence 7643 34677899999999999999999999999999999997531 11111 11
Q ss_pred CCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 595 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 595 ~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
.+|...++.+.|. |...-+++.+.|.++.+|-.
T Consensus 316 ~ehkdk~i~~rwh----------------------~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 316 AEHKDKAIQCRWH----------------------PQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EeccCceEEEEec----------------------CccceeeeccCcceEEEecc
Confidence 2488999999998 44555899999999999954
No 88
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=180.49 Aligned_cols=167 Identities=18% Similarity=0.200 Sum_probs=140.1
Q ss_pred cccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 439 TKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 439 ~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
+.|+|++++++||+.||-|.+||..++.+..- ++-+..+ ++--+..+|.|++|+.|+.+||+|+.||.+++|++.+.
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD--LkYQAqd-~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD--LKYQAQD-NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhh--hhhhhhc-ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 36999999999999999999999998874311 1111111 11123459999999999999999999999999999765
Q ss_pred CCccceeeeecCCCceEEeccCCcceeeEEEe-eCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCC
Q 001538 519 LDAKNFLFVLETKSEVHALPEGKISLCRAVFS-LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 597 (1057)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~-~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~ 597 (1057)
.- +..|. +|...|+||.||.|+..+.+++.|.+++|--+..|+++..+. ||
T Consensus 296 ~C-------------------------lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---GH 347 (508)
T KOG0275|consen 296 QC-------------------------LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---GH 347 (508)
T ss_pred hH-------------------------HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---Cc
Confidence 32 22333 699999999999999999999999999999999999987654 69
Q ss_pred CCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 598 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 598 ~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
++.|+...|. +||..+++++.||+|++|+..|++++.+.
T Consensus 348 sSyvn~a~ft----------------------~dG~~iisaSsDgtvkvW~~KtteC~~Tf 386 (508)
T KOG0275|consen 348 SSYVNEATFT----------------------DDGHHIISASSDGTVKVWHGKTTECLSTF 386 (508)
T ss_pred cccccceEEc----------------------CCCCeEEEecCCccEEEecCcchhhhhhc
Confidence 9999999998 88999999999999999999999998875
No 89
>PTZ00420 coronin; Provisional
Probab=99.78 E-value=1.2e-16 Score=189.50 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=106.1
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceee
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 526 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~ 526 (1057)
+++||+.||+|+|||+..+.. +..+ .+...|.+++|+|+|..|++++.|+.|+|||++....
T Consensus 140 iLaSgS~DgtIrIWDl~tg~~--~~~i----------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~------ 201 (568)
T PTZ00420 140 IMCSSGFDSFVNIWDIENEKR--AFQI----------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI------ 201 (568)
T ss_pred EEEEEeCCCeEEEEECCCCcE--EEEE----------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE------
Confidence 578999999999999988762 2211 1235799999999999999999999999999876432
Q ss_pred eecCCCceEEeccCCcceeeEEEeeCCCCeEE-----EEEcCCCCEEEEEeCCc----eEEEEeCCC-CeEEEEeecCCC
Q 001538 527 VLETKSEVHALPEGKISLCRAVFSLVNSPVRA-----LQFTSSGAKLAVGFECG----RVAVLDMNL-LSVLFFTDDISG 596 (1057)
Q Consensus 527 ~~~~~~~~~~i~~~~g~~~~~~~~~h~~~Its-----La~S~~g~~lA~G~~dG----~V~vwDi~~-~~~l~~~~~~~g 596 (1057)
+..+.+|.+.+.+ ..|++++++|++++.|+ +|+|||++. ...+..... ..
T Consensus 202 -------------------i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~ 261 (568)
T PTZ00420 202 -------------------ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DN 261 (568)
T ss_pred -------------------EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cC
Confidence 2345677765433 34568888998887774 799999985 455544432 12
Q ss_pred CCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcc
Q 001538 597 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 653 (1057)
Q Consensus 597 ~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~ 653 (1057)
+.+.+..... .+++.++++|..|++|++|+..++.
T Consensus 262 ~~~~L~p~~D----------------------~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 262 ASAPLIPHYD----------------------ESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CccceEEeee----------------------CCCCCEEEEEECCCeEEEEEccCCc
Confidence 2232222222 1558899999999999999998765
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.78 E-value=3.6e-17 Score=193.46 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=123.5
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccce
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
+.++++|+.||+|++||+.++. .+..+ .||..+|.++.+.+. ..+++|+.|++|++||+.+..
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~--cl~sl---------~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----- 403 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGK--CLKSL---------SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----- 403 (537)
T ss_pred CCEEEEEecCceEEEEEhhhce--eeeee---------cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-----
Confidence 4589999999999999999665 45444 388999999988776 889999999999999997642
Q ss_pred eeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEE
Q 001538 525 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl 604 (1057)
.|+.++.+|.+-|..+.+ .+++|.+++.||+|++||...+.+++.+... |...|.++
T Consensus 404 -------------------~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l 460 (537)
T KOG0274|consen 404 -------------------KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSAL 460 (537)
T ss_pred -------------------hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC--CcccEEEe
Confidence 234577788888877766 4678999999999999999999999887541 55778888
Q ss_pred EEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 605 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 605 ~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
++. ...+++++.||++.+||+.+|.++...
T Consensus 461 ~~~------------------------~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 461 ALG------------------------KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecC------------------------cceEEEEecCCeeEEEecccCchhhhh
Confidence 764 456899999999999999998877644
No 91
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.78 E-value=3.5e-18 Score=172.19 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=139.6
Q ss_pred ccCCcEEEEcCCCeEEEEEc-CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEE
Q 001538 4 CRDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 82 (1057)
Q Consensus 4 t~dG~I~v~g~~~~e~~~~~-~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l 82 (1057)
+.||.=.+=.++...++-++ .++..|.......|-.+-++++.|=+-+|||.-+|..++++.+..-|.+++|+.+.++|
T Consensus 36 ~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~l 115 (334)
T KOG0278|consen 36 SKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYL 115 (334)
T ss_pred ccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhh
Confidence 34444444333444444333 24678999888888877888889999999999999999999999999999999999999
Q ss_pred EEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE
Q 001538 83 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 162 (1057)
Q Consensus 83 ~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~ 162 (1057)
++|.....++|++++..+..+. +. ..|.+.|..+.|-.. .+.+|++.+|++|+|||.+++..
T Consensus 116 ltgg~ekllrvfdln~p~App~------------E~----~ghtg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 116 LTGGQEKLLRVFDLNRPKAPPK------------EI----SGHTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred hccchHHHhhhhhccCCCCCch------------hh----cCCCCcceeEEEecc--CceEEeeccCCceEEEEeccCcE
Confidence 9999999888877654322111 11 346778999999874 45699999999999999999999
Q ss_pred EEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 163 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
++++.. ..+|+++..+ +||.+|.+++ -++|.|||+.+
T Consensus 178 v~sL~~------------------------------~s~VtSlEvs-~dG~ilTia~-gssV~Fwdaks 214 (334)
T KOG0278|consen 178 VQSLEF------------------------------NSPVTSLEVS-QDGRILTIAY-GSSVKFWDAKS 214 (334)
T ss_pred EEEEec------------------------------CCCCcceeec-cCCCEEEEec-CceeEEecccc
Confidence 998876 6789999999 9999887776 57899999854
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=9.4e-17 Score=167.31 Aligned_cols=279 Identities=14% Similarity=0.145 Sum_probs=189.7
Q ss_pred CCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEE
Q 001538 126 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 205 (1057)
Q Consensus 126 ~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl 205 (1057)
...|.+|.|+| .++.||+++.||.+++||+....+...+.+ ..++.+.
T Consensus 13 ~d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~~~~~------------------------------~~plL~c 60 (323)
T KOG1036|consen 13 EDGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKLKFKH------------------------------GAPLLDC 60 (323)
T ss_pred hhceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhhheec------------------------------CCceeee
Confidence 45699999998 466799999999999999998877666554 7789999
Q ss_pred EEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCC
Q 001538 206 CWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 285 (1057)
Q Consensus 206 ~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~ 285 (1057)
+|. |-.++++|..||.|+.+|++++... . .+.|..+|.++..+. ....+|+||.
T Consensus 61 ~F~--d~~~~~~G~~dg~vr~~Dln~~~~~------------~----igth~~~i~ci~~~~--------~~~~vIsgsW 114 (323)
T KOG1036|consen 61 AFA--DESTIVTGGLDGQVRRYDLNTGNED------------Q----IGTHDEGIRCIEYSY--------EVGCVISGSW 114 (323)
T ss_pred ecc--CCceEEEeccCceEEEEEecCCcce------------e----eccCCCceEEEEeec--------cCCeEEEccc
Confidence 999 4678999999999999999887421 1 223566777775543 2234666665
Q ss_pred CCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhccc
Q 001538 286 EIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ 365 (1057)
Q Consensus 286 ~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~ 365 (1057)
| +.+.+||...-.....+.
T Consensus 115 D-------------------------------------------------------------~~ik~wD~R~~~~~~~~d 133 (323)
T KOG1036|consen 115 D-------------------------------------------------------------KTIKFWDPRNKVVVGTFD 133 (323)
T ss_pred C-------------------------------------------------------------ccEEEEeccccccccccc
Confidence 5 245556521100000000
Q ss_pred CCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCC
Q 001538 366 EKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD 445 (1057)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~ 445 (1057)
....|-| .+-.+
T Consensus 134 -----------------~~kkVy~---------------------------------------------------~~v~g 145 (323)
T KOG1036|consen 134 -----------------QGKKVYC---------------------------------------------------MDVSG 145 (323)
T ss_pred -----------------cCceEEE---------------------------------------------------EeccC
Confidence 0000111 12233
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
+.|+.|..|..|-+||+..... .+++.-++-...+.||++-|++.=.++++-+|.|.+=.+...+.....
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~---------~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk- 215 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDE---------PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK- 215 (323)
T ss_pred CEEEEeecCceEEEEEcccccc---------hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh-
Confidence 4688899999999999986541 112222344568999999998888899999999988776654211100
Q ss_pred eeecCCCceEEeccCCcceeeEEEee---CCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSL---VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 602 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~---h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~ 602 (1057)
+-.|.|-..... .-.||++|+|+|..+.||+|+.||.|.+||+...+-+..+.- ....|.
T Consensus 216 --------------kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~---~~~SI~ 278 (323)
T KOG1036|consen 216 --------------KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK---YETSIS 278 (323)
T ss_pred --------------ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC---CCCceE
Confidence 001111111000 124799999999999999999999999999998887777654 567799
Q ss_pred EEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEec
Q 001538 603 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK 640 (1057)
Q Consensus 603 sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~ 640 (1057)
+++|+ -+|..|++++.
T Consensus 279 slsfs----------------------~dG~~LAia~s 294 (323)
T KOG1036|consen 279 SLSFS----------------------MDGSLLAIASS 294 (323)
T ss_pred EEEec----------------------cCCCeEEEEec
Confidence 99998 67888988875
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=5.7e-17 Score=164.89 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=111.3
Q ss_pred CEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCE
Q 001538 488 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 567 (1057)
Q Consensus 488 ~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~ 567 (1057)
.+..++|.-++.++..-+..|.|.|..+..- .|+..+.+|+....||.|+|+|++
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-------------------------kpv~si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSL-------------------------KPVQSIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEecccc-------------------------ccccccccCCcceEEEEECCCCce
Confidence 4666778777777777777899999877532 234467789999999999999999
Q ss_pred EEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEE
Q 001538 568 LAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 647 (1057)
Q Consensus 568 lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~ 647 (1057)
+|+|+.|..|.|||+...-++..+. .+.-||..|.|+ +||++|++|+.|-.|-|=
T Consensus 204 fA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS----------------------~dg~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFS----------------------HDGRMLASASEDHFIDIA 258 (313)
T ss_pred EeeccccceeeccChhHhhhheeec---cccCceEEEEec----------------------cCcceeeccCccceEEeE
Confidence 9999999999999999877776554 488999999999 899999999999999999
Q ss_pred eCCCcceee----cC-----ccccCCcceeEEEEeec
Q 001538 648 GGSSENMIS----SS-----PWHLKKKVIAISMEVIE 675 (1057)
Q Consensus 648 d~~tg~~i~----~~-----~i~p~~~~~~~~~~~~d 675 (1057)
+++||..+- .. .+||+++.-+....-.|
T Consensus 259 ~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 259 EVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ecccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 999998652 11 28998877655554333
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=2.2e-16 Score=163.72 Aligned_cols=278 Identities=16% Similarity=0.270 Sum_probs=181.0
Q ss_pred CCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccC-CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCC
Q 001538 123 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 201 (1057)
Q Consensus 123 ~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 201 (1057)
.+....|.+|+|+|.. ...++.++.||+|++|++.. |..+- +.. ..+.++
T Consensus 24 ~pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~g~~~~----ka~------------------------~~~~~P 74 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNSGQLVP----KAQ------------------------QSHDGP 74 (347)
T ss_pred CCcccchheeEecccc-CceEEecccCCceEEEEEecCCcccc----hhh------------------------hccCCC
Confidence 3446679999999964 44566899999999999976 33332 111 122789
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEE
Q 001538 202 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFV 281 (1057)
Q Consensus 202 Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv 281 (1057)
|.++||+ .||+.+++|+.|+.+++||+.++. +.+ .+-|..||..++|..+. ...+++
T Consensus 75 vL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S~Q------------~~~----v~~Hd~pvkt~~wv~~~------~~~cl~ 131 (347)
T KOG0647|consen 75 VLDVCWS-DDGSKVFSGGCDKQAKLWDLASGQ------------VSQ----VAAHDAPVKTCHWVPGM------NYQCLV 131 (347)
T ss_pred eEEEEEc-cCCceEEeeccCCceEEEEccCCC------------eee----eeecccceeEEEEecCC------CcceeE
Confidence 9999999 999999999999999999998873 122 22367799999998632 345677
Q ss_pred ecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhh
Q 001538 282 YGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTL 361 (1057)
Q Consensus 282 ~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~ 361 (1057)
+|+.| . +|.+||
T Consensus 132 TGSWD----K---------------------------------------------------------TlKfWD------- 143 (347)
T KOG0647|consen 132 TGSWD----K---------------------------------------------------------TLKFWD------- 143 (347)
T ss_pred ecccc----c---------------------------------------------------------ceeecc-------
Confidence 77765 2 445555
Q ss_pred hcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCcccc
Q 001538 362 LSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKC 441 (1057)
Q Consensus 362 l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~ 441 (1057)
+..+ . ++..+.+ + ++ .. . .
T Consensus 144 ~R~~----------~---------pv~t~~L---P-eR----vY----------a------------------------~ 162 (347)
T KOG0647|consen 144 TRSS----------N---------PVATLQL---P-ER----VY----------A------------------------A 162 (347)
T ss_pred cCCC----------C---------eeeeeec---c-ce----ee----------e------------------------h
Confidence 1110 0 0000000 0 00 00 0 0
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCc
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 521 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~ 521 (1057)
.-...+++.+..+..|.++++..+.... .... +.-..-+.||++.+|....|.|+-.|.|.|..+......
T Consensus 163 Dv~~pm~vVata~r~i~vynL~n~~te~-k~~~--------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 163 DVLYPMAVVATAERHIAVYNLENPPTEF-KRIE--------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred hccCceeEEEecCCcEEEEEcCCCcchh-hhhc--------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 0001145666677888888886553110 0000 112346889999999988899999999999988763223
Q ss_pred cceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCe
Q 001538 522 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI 601 (1057)
Q Consensus 522 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V 601 (1057)
.++.|--+.... .....-.+|++|+|.|....||+++.||+..+||-....-|+.... |..||
T Consensus 234 ~nFtFkCHR~~~--------------~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~---~~qpI 296 (347)
T KOG0647|consen 234 DNFTFKCHRSTN--------------SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET---HPQPI 296 (347)
T ss_pred CceeEEEeccCC--------------CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc---CCCcc
Confidence 333211100000 0000123689999999999999999999999999987776766555 89999
Q ss_pred EEEEEe
Q 001538 602 ISMTWT 607 (1057)
Q Consensus 602 ~sl~f~ 607 (1057)
++..|+
T Consensus 297 tcc~fn 302 (347)
T KOG0647|consen 297 TCCSFN 302 (347)
T ss_pred ceeEec
Confidence 999998
No 95
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.9e-18 Score=175.20 Aligned_cols=199 Identities=19% Similarity=0.263 Sum_probs=152.1
Q ss_pred EEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEE
Q 001538 489 VSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL 568 (1057)
Q Consensus 489 V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~l 568 (1057)
.+|+.|++.|.+||+|+.||.|.||||.+-... ..+.+|-.+|+||+||++|++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-------------------------r~lsaH~~pi~sl~WS~dgr~L 80 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-------------------------RMLSAHVRPITSLCWSRDGRKL 80 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-------------------------hhhhccccceeEEEecCCCCEe
Confidence 789999999999999999999999999764321 2677899999999999999999
Q ss_pred EEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccc-----------cCC-CCC--------CCCcCCC
Q 001538 569 AVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSL-----------AKN-PNH--------SEREVPV 628 (1057)
Q Consensus 569 A~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~-----------~~~-~~~--------~~~~~~~ 628 (1057)
.+++.|-.|++||+..|.+++.+.. .+||+..+|.++..+... .++ |.+ .++...+
T Consensus 81 ltsS~D~si~lwDl~~gs~l~rirf----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRIRF----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred eeecCCceeEEEeccCCCceeEEEc----cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 9999999999999999999998875 789999999876554321 111 222 2222222
Q ss_pred -----CCCCcEEEEEecCCeEEEEeCCCcceeecCccccCCcceeEEEEeecCCCCCCCcccccchhhhcccCCCCCCCC
Q 001538 629 -----NPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDT 703 (1057)
Q Consensus 629 -----~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~i~p~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1057)
.+.|+++++|+..|.+.++|.+|.+++.+..+......+.|.+...
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~----------------------------- 207 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRK----------------------------- 207 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEecc-----------------------------
Confidence 3458999999999999999999999998874433222222222211
Q ss_pred CCcccCCCccccccccccccCCCCCCCceEEEEecCeeEEeecccccc----ccceeeeeec-cC-----Ccceeee
Q 001538 704 SSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSVIQ----GNNKTVQKVK-HK-----NRCCWAS 770 (1057)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~se~~ir~~s~~~~~~----g~~k~~~K~~-~~-----~~~~~~~ 770 (1057)
+ ..+++.|+++.||+|.+..+.. |..++.||++ +. +.||+..
T Consensus 208 ---------------------g----~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 208 ---------------------G----RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred ---------------------C----cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 0 5799999999999999886543 5688889955 22 5788865
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-16 Score=162.76 Aligned_cols=297 Identities=15% Similarity=0.160 Sum_probs=192.4
Q ss_pred CCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCe
Q 001538 123 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 202 (1057)
Q Consensus 123 ~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~V 202 (1057)
.+|.-|++.|.++- +|.+|.+..-|.++.+|=-..|+.+-+..+ | .+.|
T Consensus 7 ~GHERplTqiKyN~--eGDLlFscaKD~~~~vw~s~nGerlGty~G---------H--------------------tGav 55 (327)
T KOG0643|consen 7 QGHERPLTQIKYNR--EGDLLFSCAKDSTPTVWYSLNGERLGTYDG---------H--------------------TGAV 55 (327)
T ss_pred ccCccccceEEecC--CCcEEEEecCCCCceEEEecCCceeeeecC---------C--------------------CceE
Confidence 34667999999998 799999999999999999888998887776 4 8899
Q ss_pred EEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEe
Q 001538 203 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVY 282 (1057)
Q Consensus 203 tsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~ 282 (1057)
+|+... -+..+++||+.|.++++||+++|... .. + .-..||..+.++. ++.++++
T Consensus 56 W~~Did-~~s~~liTGSAD~t~kLWDv~tGk~l-----------a~--~---k~~~~Vk~~~F~~--------~gn~~l~ 110 (327)
T KOG0643|consen 56 WCCDID-WDSKHLITGSADQTAKLWDVETGKQL-----------AT--W---KTNSPVKRVDFSF--------GGNLILA 110 (327)
T ss_pred EEEEec-CCcceeeeccccceeEEEEcCCCcEE-----------EE--e---ecCCeeEEEeecc--------CCcEEEE
Confidence 999998 88999999999999999999998421 11 1 1123455554432 2233222
Q ss_pred cCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhh
Q 001538 283 GGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 362 (1057)
Q Consensus 283 gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l 362 (1057)
..+. .| ...+.+.++|.+.-..-.
T Consensus 111 ~tD~--------------~m------------------------------------------g~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 111 STDK--------------QM------------------------------------------GYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred Eehh--------------hc------------------------------------------CcceEEEEEEccCChhhh
Confidence 2111 00 011233444411100000
Q ss_pred cccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccC
Q 001538 363 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCH 442 (1057)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~ 442 (1057)
.+...-..++.+++.+|.+ . ..
T Consensus 135 ---------~s~ep~~kI~t~~skit~a-------------~------------------------------------Wg 156 (327)
T KOG0643|consen 135 ---------DSEEPYLKIPTPDSKITSA-------------L------------------------------------WG 156 (327)
T ss_pred ---------cccCceEEecCCccceeee-------------e------------------------------------ec
Confidence 0000011222222222211 1 23
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcc
Q 001538 443 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 522 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~ 522 (1057)
+.+..|++||+||.|++||+..+.. .+.. -..|+..|+.+.|++|..++++|+.|.+-++||+..-..
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~-~v~s---------~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-- 224 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKE-LVDS---------DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-- 224 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCce-eeec---------hhhhccccccccccCCcceEEecccCccceeeeccceee--
Confidence 3456899999999999999998752 1111 124677999999999999999999999999999865322
Q ss_pred ceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEE--EeCCCCeE-------EEE--e
Q 001538 523 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV--LDMNLLSV-------LFF--T 591 (1057)
Q Consensus 523 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~v--wDi~~~~~-------l~~--~ 591 (1057)
+..+ .-..||++.+++|.-.+++.|+..-.--| =+.+.++- ++. +
T Consensus 225 -----------------------~Kty-~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 225 -----------------------LKTY-TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred -----------------------EEEe-eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence 1122 24679999999998777766654322111 11122211 000 1
Q ss_pred ecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEE
Q 001538 592 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 647 (1057)
Q Consensus 592 ~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~ 647 (1057)
....||=+||.+++|+ |+|....+|+.||.|++.
T Consensus 281 grvkGHFGPINsvAfh----------------------PdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFH----------------------PDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ccccccccCcceeEEC----------------------CCCcccccCCCCceEEEE
Confidence 1134799999999999 899999999999999987
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.76 E-value=1.8e-16 Score=171.18 Aligned_cols=284 Identities=19% Similarity=0.228 Sum_probs=200.5
Q ss_pred CCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEE
Q 001538 126 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 205 (1057)
Q Consensus 126 ~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl 205 (1057)
...+.++...|. .+.+++|+.|..+.++|...++++..+.+ | ...|+++
T Consensus 219 ~pgi~ald~~~s--~~~ilTGG~d~~av~~d~~s~q~l~~~~G---------h--------------------~kki~~v 267 (506)
T KOG0289|consen 219 TPGITALDIIPS--SSKILTGGEDKTAVLFDKPSNQILATLKG---------H--------------------TKKITSV 267 (506)
T ss_pred CCCeeEEeecCC--CCcceecCCCCceEEEecchhhhhhhccC---------c--------------------ceEEEEE
Confidence 445788888884 34599999999888999999999998887 3 8899999
Q ss_pred EEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCC
Q 001538 206 CWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 285 (1057)
Q Consensus 206 ~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~ 285 (1057)
.|| |+...+++++.|-.|++|.++..... .+ ...|..||.-+
T Consensus 268 ~~~-~~~~~v~~aSad~~i~vws~~~~s~~---------~~------~~~h~~~V~~l---------------------- 309 (506)
T KOG0289|consen 268 KFH-KDLDTVITASADEIIRVWSVPLSSEP---------TS------SRPHEEPVTGL---------------------- 309 (506)
T ss_pred Eec-cchhheeecCCcceEEeeccccccCc---------cc------cccccccceee----------------------
Confidence 999 99999999999999999998654210 00 11123333332
Q ss_pred CCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhccc
Q 001538 286 EIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ 365 (1057)
Q Consensus 286 ~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~ 365 (1057)
.+-|.+ .+++..+++|...++|-....
T Consensus 310 ---------------------------------------s~h~tg--------eYllsAs~d~~w~Fsd~~~g~------ 336 (506)
T KOG0289|consen 310 ---------------------------------------SLHPTG--------EYLLSASNDGTWAFSDISSGS------ 336 (506)
T ss_pred ---------------------------------------eeccCC--------cEEEEecCCceEEEEEccCCc------
Confidence 111111 145555666666666511100
Q ss_pred CCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCC
Q 001538 366 EKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD 445 (1057)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~ 445 (1057)
.++.+ ++.... .. ++ ..+++||+
T Consensus 337 --------------------~lt~v---s~~~s~----------------v~----------~t--------s~~fHpDg 359 (506)
T KOG0289|consen 337 --------------------QLTVV---SDETSD----------------VE----------YT--------SAAFHPDG 359 (506)
T ss_pred --------------------EEEEE---eecccc----------------ce----------eE--------EeeEcCCc
Confidence 00100 110000 00 01 11589999
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
.++.||..||.|+|||+..+. .. -++.+|.++|.+|+|+.+|-+||++.+|+.|++||+++......+
T Consensus 360 Lifgtgt~d~~vkiwdlks~~--~~---------a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~- 427 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQT--NV---------AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI- 427 (506)
T ss_pred eEEeccCCCceEEEEEcCCcc--cc---------ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee-
Confidence 999999999999999998775 11 245689999999999999999999999999999999987654221
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeE--EEEeecCCCCCCCeEE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV--LFFTDDISGSSSPIIS 603 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~--l~~~~~~~g~~~~V~s 603 (1057)
.+ ....+|.++.|.+.|++|++++.|=+|.+++-.+... +..+ ..|++..+.
T Consensus 428 ----------------------~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~---~~~sg~st~ 481 (506)
T KOG0289|consen 428 ----------------------QL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL---ADHSGLSTG 481 (506)
T ss_pred ----------------------ec-cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh---hhcccccce
Confidence 11 1234799999999999999999987777777544433 3332 237778899
Q ss_pred EEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 604 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 604 l~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
+.|. -..++|++++.|..++++.
T Consensus 482 v~Fg----------------------~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 482 VRFG----------------------EHAQYLASTSMDAILRLYA 504 (506)
T ss_pred eeec----------------------ccceEEeeccchhheEEee
Confidence 9997 4467899999999888774
No 98
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=5.5e-17 Score=164.32 Aligned_cols=147 Identities=15% Similarity=0.169 Sum_probs=116.2
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEec-CCCeEEEEecCccEEEEEecCCCCcc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAK 522 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fsp-d~~~Lavg~~dG~V~l~~~~~~~~~~ 522 (1057)
.++++++++.||+.||||+..+.- .+ .+..|+..|.|+.|+. +-..|++|+.|+.|+.||++.-+.
T Consensus 159 ~~nlfas~Sgd~~l~lwdvr~~gk-~~----------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-- 225 (311)
T KOG0277|consen 159 IPNLFASASGDGTLRLWDVRSPGK-FM----------SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-- 225 (311)
T ss_pred CCCeEEEccCCceEEEEEecCCCc-ee----------EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--
Confidence 456899999999999999876541 11 1235667899999986 445789999999999999976432
Q ss_pred ceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC-CEEEEEeCCceEEEEeCCC-CeEEEEeecCCCCCCC
Q 001538 523 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNL-LSVLFFTDDISGSSSP 600 (1057)
Q Consensus 523 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g-~~lA~G~~dG~V~vwDi~~-~~~l~~~~~~~g~~~~ 600 (1057)
|+..+.+|.-.|..++|||-. ..||+++-|-++++||... -..+.+... |+.-
T Consensus 226 ----------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~---HtEF 280 (311)
T KOG0277|consen 226 ----------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH---HTEF 280 (311)
T ss_pred ----------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc---cceE
Confidence 345678899999999999954 5799999999999999973 344444433 8899
Q ss_pred eEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 601 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 601 V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
|..+.|+. .+..++++.+=|+.+.||+.
T Consensus 281 v~g~Dws~---------------------~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 281 VCGLDWSL---------------------FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred Eecccccc---------------------ccCceeeecccccceeeecc
Confidence 99999984 34678999999999999974
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-16 Score=181.05 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=118.2
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEE--ecCccEEEEEec
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVG--NEFGLVYIYNLN 516 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg--~~dG~V~l~~~~ 516 (1057)
..+++++.+++|+.|+.|.|||....++ +.. +..|..+|.+++|||-.. .||+| +.|+.|++|+..
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~p--~~~---------~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPEP--KFT---------FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCccc--cEE---------EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence 3567778999999999999999966552 222 236888999999999654 78886 458999999987
Q ss_pred CCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEE--EEEeCCceEEEEeCCCCeEEEEeecC
Q 001538 517 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL--AVGFECGRVAVLDMNLLSVLFFTDDI 594 (1057)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~l--A~G~~dG~V~vwDi~~~~~l~~~~~~ 594 (1057)
...... ...-.+.|++|.|++.++-| +.|+.+..|.||++-+.+.+..+
T Consensus 377 ~g~~i~--------------------------~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l--- 427 (484)
T KOG0305|consen 377 TGARID--------------------------SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL--- 427 (484)
T ss_pred CCcEec--------------------------ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee---
Confidence 543311 11235689999999998654 44788999999999887776654
Q ss_pred CCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 595 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 595 ~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
.||...|..|+++ ||+..+++|+.|.++++|+.=
T Consensus 428 ~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 428 LGHTSRVLYLALS----------------------PDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred cCCcceeEEEEEC----------------------CCCCEEEEecccCcEEecccc
Confidence 4699999999998 999999999999999999753
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.76 E-value=1.2e-16 Score=190.47 Aligned_cols=323 Identities=16% Similarity=0.200 Sum_probs=210.2
Q ss_pred CCEEEEEEecCCcEEEEEc--cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEE
Q 001538 68 SNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 145 (1057)
Q Consensus 68 ~~Ita~~~sp~~~~l~vG~--~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli 145 (1057)
..|.++.++|++..+++|+ .||.+.+|+.++-..+.. ..... +.+....-..|.+.|.|+.|+| +|.+|++
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~--~~~~~---l~k~l~~m~~h~~sv~CVR~S~--dG~~lAs 86 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE--EKNEN---LPKHLCTMDDHDGSVNCVRFSP--DGSYLAS 86 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhh--hhhcc---cchhheeeccccCceeEEEECC--CCCeEee
Confidence 4689999999999999999 888888998765321111 00000 0011112246789999999999 7999999
Q ss_pred EECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEE
Q 001538 146 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 225 (1057)
Q Consensus 146 ~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~ 225 (1057)
|++|..|.+|...+.-.-..|+..+.+... ..-+....-..|...|..++|+ ||+.++|+++.|++|.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~v-----------E~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNV-----------ESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVI 154 (942)
T ss_pred ccCcceEEEeeecccCCccccccccccccc-----------ceeeEEEEEecCCCccceeccC-CCccEEEEecccceEE
Confidence 999999999998751111111100000000 0000000111248899999999 9999999999999999
Q ss_pred EEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccc
Q 001538 226 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 305 (1057)
Q Consensus 226 lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~ 305 (1057)
+||..+... ++++.
T Consensus 155 iwn~~tF~~----------------------------------------------------------~~vl~-------- 168 (942)
T KOG0973|consen 155 IWNAKTFEL----------------------------------------------------------LKVLR-------- 168 (942)
T ss_pred EEcccccee----------------------------------------------------------eeeee--------
Confidence 999855310 11100
Q ss_pred cceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCC
Q 001538 306 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 385 (1057)
Q Consensus 306 ~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 385 (1057)
.|.+
T Consensus 169 ----------------------------------------------------------------------------~H~s 172 (942)
T KOG0973|consen 169 ----------------------------------------------------------------------------GHQS 172 (942)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0111
Q ss_pred cceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCC
Q 001538 386 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 465 (1057)
Q Consensus 386 ~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~ 465 (1057)
. +.|. .+.|.+++++|=+.|++|+||+...-
T Consensus 173 ~-----------------------------------------VKGv--------s~DP~Gky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 173 L-----------------------------------------VKGV--------SWDPIGKYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred c-----------------------------------------ccce--------EECCccCeeeeecCCceEEEEEcccc
Confidence 0 0110 14556678999999999999996652
Q ss_pred ceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecC-ccEEEEEecCCCCccceeeeecCCCceEEeccCCcce
Q 001538 466 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF-GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 544 (1057)
Q Consensus 466 ~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~d-G~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~ 544 (1057)
. .-+....+-.+. +-..-...++|+|||.+|++...- |-... +..|. .+++.
T Consensus 204 ~--i~k~It~pf~~~---~~~T~f~RlSWSPDG~~las~nA~n~~~~~---------------------~~Iie-R~tWk 256 (942)
T KOG0973|consen 204 G--IEKSITKPFEES---PLTTFFLRLSWSPDGHHLASPNAVNGGKST---------------------IAIIE-RGTWK 256 (942)
T ss_pred e--eeEeeccchhhC---CCcceeeecccCCCcCeecchhhccCCcce---------------------eEEEe-cCCce
Confidence 2 112222111111 122357889999999999987432 11100 11111 13333
Q ss_pred eeEEEeeCCCCeEEEEEcCC-----CC------------EEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEe
Q 001538 545 CRAVFSLVNSPVRALQFTSS-----GA------------KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 545 ~~~~~~~h~~~ItsLa~S~~-----g~------------~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~ 607 (1057)
+-..|.+|.+++++++|+|. -+ .+|+|+.|++|.||....++.++..+-+ ...+|..++|+
T Consensus 257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~DmsWs 334 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVDMSWS 334 (942)
T ss_pred eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh--hcCceeeeeEc
Confidence 33467799999999999984 11 6899999999999999888887766433 46789999999
Q ss_pred eccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 608 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
|||..|++++.||+|.++.-+.
T Consensus 335 ----------------------pdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 335 ----------------------PDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ----------------------CCCCeEEEEecCCeEEEEEcch
Confidence 8999999999999999998654
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.76 E-value=1.6e-17 Score=178.31 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=119.5
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCc--eeeeecC-CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~--~l~tl~~-~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
...+..+.|.++...|++++.|..|++|++...+ +..++.. -++|+++.+++++.+++..+.|+++++|++|..+
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-- 252 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-- 252 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh--
Confidence 3458899999998899999999999999988776 4555543 3789999999999999999999999999987632
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
+. . ...+|...|+++.|.-. ..+++.|+.|.+|++||+....+..+.-.
T Consensus 253 ~~------~---------TLsGHtdkVt~ak~~~~--~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-------------- 301 (459)
T KOG0288|consen 253 LR------H---------TLSGHTDKVTAAKFKLS--HSRVVSGSADRTIKLWDLQKAYCSKTVLP-------------- 301 (459)
T ss_pred hh------h---------hhcccccceeeehhhcc--ccceeeccccchhhhhhhhhhheeccccc--------------
Confidence 11 0 11336778999998762 34589999999999999998776543221
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
...+..++.. +..+++||.|+.|+|||+.+.
T Consensus 302 ----------------~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 302 ----------------GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred ----------------cccccceEec---ceeeeecccccceEEEeccCC
Confidence 2233344433 567899999999999999664
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1e-16 Score=174.40 Aligned_cols=161 Identities=16% Similarity=0.263 Sum_probs=131.1
Q ss_pred EcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCC--ceeeeecCC-CCEEEEEEecCCc-EEEEEccCCcEEEEEEe
Q 001538 22 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SLACCLKWE-SNITAFSVISGSH-FMYIGDENGLMSVIKYD 97 (1057)
Q Consensus 22 ~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~--~~l~tl~~~-~~Ita~~~sp~~~-~l~vG~~~G~v~v~~~d 97 (1057)
..|...+|++|+|.|.-..|++++.|++++++-++.+ ..++++.+. .+|.+.+|.|.|. .+++++..- .++.||
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk--y~ysyD 286 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK--YLYSYD 286 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccce--EEEEee
Confidence 4677789999999999999999999999999998754 457777655 6899999999999 788887777 667777
Q ss_pred CCCCceec--cCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccC
Q 001538 98 ADEGKLFQ--LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 175 (1057)
Q Consensus 98 ~~~~~l~~--~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~ 175 (1057)
....++.+ ++|-.+ ...+.....+| +++.|++++..|.|.|-...+++.+..+.-
T Consensus 287 le~ak~~k~~~~~g~e--------------~~~~e~FeVSh--d~~fia~~G~~G~I~lLhakT~eli~s~Ki------- 343 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVE--------------EKSMERFEVSH--DSNFIAIAGNNGHIHLLHAKTKELITSFKI------- 343 (514)
T ss_pred ccccccccccCCCCcc--------------cchhheeEecC--CCCeEEEcccCceEEeehhhhhhhhheeee-------
Confidence 77666651 112221 12356667788 688999999999999999999999887765
Q ss_pred CccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 176 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 176 ~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
.+.|+.++|+ .||..|+..+.+|.|.+||+..
T Consensus 344 -----------------------eG~v~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 344 -----------------------EGVVSDFTFS-SDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred -----------------------ccEEeeEEEe-cCCcEEEEEcCCceEEEEecCC
Confidence 6789999999 8999999999999999999953
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.5e-15 Score=147.49 Aligned_cols=309 Identities=16% Similarity=0.203 Sum_probs=217.0
Q ss_pred CCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEE------CCCCcee--------e-ee-cCCCCEEEEEEecC
Q 001538 15 DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS------LESRSLA--------C-CL-KWESNITAFSVISG 78 (1057)
Q Consensus 15 ~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWd------l~s~~~l--------~-tl-~~~~~Ita~~~sp~ 78 (1057)
...|++-.......|+.++|.|+|+..+.++...+.+|-- ++.+... . .- .+.+.|.|.+|+|.
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred cceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 4567777777788999999999999888888888988743 3332211 1 01 13489999999999
Q ss_pred CcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEe--CcCCCCCeEEEEEC--CCEEEE
Q 001538 79 SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP--HPNSSGNRVLIAYE--NALVIL 154 (1057)
Q Consensus 79 ~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~--sP~d~g~~lli~~~--dG~I~l 154 (1057)
+..+++|+.|.+|+++.++.+..+++. ..+.. .-|.+.|..++| .|.. |..+|+... |+.|.+
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g--~dle~----------nmhdgtirdl~fld~~~s-~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATG--HDLEF----------NMHDGTIRDLAFLDDPES-GGAILASAGAGDCKIYI 167 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccC--cceee----------eecCCceeeeEEecCCCc-CceEEEecCCCcceEEE
Confidence 999999999999999998877665552 11110 124677888888 4543 445666544 456666
Q ss_pred EEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCc
Q 001538 155 WDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 234 (1057)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~ 234 (1057)
-|...|+..+.+.+ | .+.|.++ ++ =+|-++++|+.|.+|+|||+.-..
T Consensus 168 tdc~~g~~~~a~sg---------h--------------------tghilal-ys-wn~~m~~sgsqdktirfwdlrv~~- 215 (350)
T KOG0641|consen 168 TDCGRGQGFHALSG---------H--------------------TGHILAL-YS-WNGAMFASGSQDKTIRFWDLRVNS- 215 (350)
T ss_pred eecCCCCcceeecC---------C--------------------cccEEEE-EE-ecCcEEEccCCCceEEEEeeeccc-
Confidence 67777777666555 2 6667665 33 458999999999999999983210
Q ss_pred cCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeee
Q 001538 235 TKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVD 314 (1057)
Q Consensus 235 ~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~ 314 (1057)
.|..+ +.+
T Consensus 216 ------------------------~v~~l--------------------~~~---------------------------- 223 (350)
T KOG0641|consen 216 ------------------------CVNTL--------------------DND---------------------------- 223 (350)
T ss_pred ------------------------eeeec--------------------cCc----------------------------
Confidence 00111 000
Q ss_pred ecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEe
Q 001538 315 ITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFML 394 (1057)
Q Consensus 315 l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~ 394 (1057)
+ .+|- + ..+.|+.+
T Consensus 224 ------~------------------------~~~g------------l--------------------essavaav---- 237 (350)
T KOG0641|consen 224 ------F------------------------HDGG------------L--------------------ESSAVAAV---- 237 (350)
T ss_pred ------c------------------------cCCC------------c--------------------ccceeEEE----
Confidence 0 0000 0 00001100
Q ss_pred ccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecc
Q 001538 395 LPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALD 474 (1057)
Q Consensus 395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~ 474 (1057)
++.|.+++|++|+.|.+..+||+..+...+
T Consensus 238 ---------------------------------------------~vdpsgrll~sg~~dssc~lydirg~r~iq----- 267 (350)
T KOG0641|consen 238 ---------------------------------------------AVDPSGRLLASGHADSSCMLYDIRGGRMIQ----- 267 (350)
T ss_pred ---------------------------------------------EECCCcceeeeccCCCceEEEEeeCCceee-----
Confidence 255677899999999999999999987322
Q ss_pred cceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCC
Q 001538 475 AEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS 554 (1057)
Q Consensus 475 ~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~ 554 (1057)
.+..|...|.||.|+|..-+|.+++.|..|++-|++..-.. -.|+.+...|+.
T Consensus 268 ------~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~---------------------el~~~vv~ehkd 320 (350)
T KOG0641|consen 268 ------RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH---------------------ELPIMVVAEHKD 320 (350)
T ss_pred ------eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh---------------------cCceEEEEeccC
Confidence 23367889999999999999999999999999998754211 123456667999
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEeCC
Q 001538 555 PVRALQFTSSGAKLAVGFECGRVAVLDMN 583 (1057)
Q Consensus 555 ~ItsLa~S~~g~~lA~G~~dG~V~vwDi~ 583 (1057)
.+..+.|.|..--+.+.+.|.++.+|-+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999988778999999999999764
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.8e-17 Score=175.11 Aligned_cols=287 Identities=14% Similarity=0.193 Sum_probs=197.8
Q ss_pred CCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCC
Q 001538 122 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 201 (1057)
Q Consensus 122 ~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 201 (1057)
..+|...|.+++=||.... .+++|+.||.|+|||+.+.++..+|.. | .+.
T Consensus 62 L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~A---------H--------------------~G~ 111 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKA---------H--------------------EGL 111 (433)
T ss_pred ccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeec---------c--------------------cCc
Confidence 3567888999999996434 499999999999999999999888876 4 789
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEE
Q 001538 202 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFV 281 (1057)
Q Consensus 202 Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv 281 (1057)
|..++++ . ..++++++|.+|+.|.+... |+..+ .+ ++. +
T Consensus 112 V~Gi~v~-~--~~~~tvgdDKtvK~wk~~~~--------------------------p~~ti--lg--------~s~--~ 150 (433)
T KOG0268|consen 112 VRGICVT-Q--TSFFTVGDDKTVKQWKIDGP--------------------------PLHTI--LG--------KSV--Y 150 (433)
T ss_pred eeeEEec-c--cceEEecCCcceeeeeccCC--------------------------cceee--ec--------ccc--c
Confidence 9999998 4 56888889999999988431 11111 00 000 0
Q ss_pred ecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhh
Q 001538 282 YGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTL 361 (1057)
Q Consensus 282 ~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~ 361 (1057)
.|-+. +....+++.+ ..++.+||..
T Consensus 151 ~gIdh-------------------------------------------------~~~~~~FaTc-Ge~i~IWD~~----- 175 (433)
T KOG0268|consen 151 LGIDH-------------------------------------------------HRKNSVFATC-GEQIDIWDEQ----- 175 (433)
T ss_pred ccccc-------------------------------------------------cccccccccc-Cceeeecccc-----
Confidence 00000 0000112211 1256778721
Q ss_pred hcccCCCCCCCCcccc-cccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccc
Q 001538 362 LSQQEKKPSVCPVEFP-GVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITK 440 (1057)
Q Consensus 362 l~~~~~~~~~~~~~~~-~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~ 440 (1057)
...| .++.|-.+.|+++.|.+..
T Consensus 176 ------------R~~Pv~smswG~Dti~svkfNpvE-------------------------------------------- 199 (433)
T KOG0268|consen 176 ------------RDNPVSSMSWGADSISSVKFNPVE-------------------------------------------- 199 (433)
T ss_pred ------------cCCccceeecCCCceeEEecCCCc--------------------------------------------
Confidence 0111 2234444555555552211
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
-.+|++|.+|++|-++|+..... +..+ .+. ..-+.|+|+|+.--+++|++|-.++.||++.-..
T Consensus 200 ----TsILas~~sDrsIvLyD~R~~~P--l~KV-------i~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 200 ----TSILASCASDRSIVLYDLRQASP--LKKV-------ILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR 263 (433)
T ss_pred ----chheeeeccCCceEEEecccCCc--ccee-------eee---ccccceecCccccceeeccccccceehhhhhhcc
Confidence 12688899999999999987762 2211 111 2566899999888899999999999999865332
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeE--EEEeecCCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV--LFFTDDISGSS 598 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~--l~~~~~~~g~~ 598 (1057)
|..++..|.+.|.++.|||-|+-+++|+-|.+|+|+.++.+.- +|... -=
T Consensus 264 ------------------------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk----RM 315 (433)
T KOG0268|consen 264 ------------------------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK----RM 315 (433)
T ss_pred ------------------------cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh----hh
Confidence 2346778999999999999999999999999999999976532 22211 12
Q ss_pred CCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceee
Q 001538 599 SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 656 (1057)
Q Consensus 599 ~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~ 656 (1057)
..|.++.|+ -|++++++|++|+.|++|-..-.+.++
T Consensus 316 q~V~~Vk~S----------------------~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 316 QHVFCVKYS----------------------MDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred heeeEEEEe----------------------ccccEEEecCCCcceeeeecchhhhcC
Confidence 579999998 789999999999999999765544443
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=4.5e-16 Score=169.63 Aligned_cols=292 Identities=19% Similarity=0.213 Sum_probs=184.3
Q ss_pred CCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCe
Q 001538 123 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 202 (1057)
Q Consensus 123 ~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~V 202 (1057)
..|.-+|++++++| ++++++.++-+|+|.=|++.+++.+..+.-++.-.+ .|-.|... .. +.+...+
T Consensus 139 ~~H~~s~~~vals~--d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k--~~~~~~k~--------~r-~~h~kei 205 (479)
T KOG0299|consen 139 GKHQLSVTSVALSP--DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLK--SHGNPLKE--------SR-KGHVKEI 205 (479)
T ss_pred ccccCcceEEEeec--cccceeecCCCcceeeeehhcCcccccccccchhhh--hccCCCCc--------cc-cccccee
Confidence 46788999999999 577899999999999999999986633322110011 01000100 01 2457899
Q ss_pred EEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEe
Q 001538 203 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVY 282 (1057)
Q Consensus 203 tsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~ 282 (1057)
.+++.+ +||++||+|..|..|.||+..+.. ++. ..+.|+.+|..+.+-. ++.
T Consensus 206 l~~avS-~Dgkylatgg~d~~v~Iw~~~t~e-----------hv~----~~~ghr~~V~~L~fr~--------gt~---- 257 (479)
T KOG0299|consen 206 LTLAVS-SDGKYLATGGRDRHVQIWDCDTLE-----------HVK----VFKGHRGAVSSLAFRK--------GTS---- 257 (479)
T ss_pred EEEEEc-CCCcEEEecCCCceEEEecCcccc-----------hhh----cccccccceeeeeeec--------Ccc----
Confidence 999999 999999999999999999998763 111 1233555666553321 111
Q ss_pred cCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhh
Q 001538 283 GGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 362 (1057)
Q Consensus 283 gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l 362 (1057)
.++..+.+..+.+|+....
T Consensus 258 ---------------------------------------------------------~lys~s~Drsvkvw~~~~~---- 276 (479)
T KOG0299|consen 258 ---------------------------------------------------------ELYSASADRSVKVWSIDQL---- 276 (479)
T ss_pred ---------------------------------------------------------ceeeeecCCceEEEehhHh----
Confidence 2333344456666652110
Q ss_pred cccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccC
Q 001538 363 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCH 442 (1057)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~ 442 (1057)
.+.-++-.|...|..+. ..
T Consensus 277 ------------s~vetlyGHqd~v~~Id-------------------------------------------------aL 295 (479)
T KOG0299|consen 277 ------------SYVETLYGHQDGVLGID-------------------------------------------------AL 295 (479)
T ss_pred ------------HHHHHHhCCccceeeec-------------------------------------------------hh
Confidence 00011111222221111 11
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcc
Q 001538 443 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 522 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~ 522 (1057)
.-++.+..|+.|+++|+|++.... ++++ .++...+.|++|-. ...+++|+.+|.|.||++.+.+..
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~ees-qlif-----------rg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkpl- 361 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEES-QLIF-----------RGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPL- 361 (479)
T ss_pred cccceEEeccccceeEEEeccccc-eeee-----------eCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCce-
Confidence 223456667799999999995432 3333 25667899999964 457899999999999999775442
Q ss_pred ceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCC----eEEEEeecCCCCC
Q 001538 523 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL----SVLFFTDDISGSS 598 (1057)
Q Consensus 523 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~----~~l~~~~~~~g~~ 598 (1057)
...+...|..+...-..++..|++|+..|...++|+|+.+|.|+||-+..+ .+++.+. ..
T Consensus 362 ------------f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls----~~ 425 (479)
T KOG0299|consen 362 ------------FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS----LV 425 (479)
T ss_pred ------------eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc----cc
Confidence 111111111111111124468999999999999999999999999999776 4455443 46
Q ss_pred CCeEEEEEe
Q 001538 599 SPIISMTWT 607 (1057)
Q Consensus 599 ~~V~sl~f~ 607 (1057)
+-|++|+|+
T Consensus 426 GfVNsl~f~ 434 (479)
T KOG0299|consen 426 GFVNSLAFS 434 (479)
T ss_pred cEEEEEEEc
Confidence 789999998
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2e-15 Score=158.40 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=118.1
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
..+++++.|++||+||++....+-+.. +. .-..++|+|+|..+|+|.....|+|||++.-.. +.
T Consensus 113 d~FlS~S~D~tvrLWDlR~~~cqg~l~---------~~----~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk-gP-- 176 (311)
T KOG1446|consen 113 DTFLSSSLDKTVRLWDLRVKKCQGLLN---------LS----GRPIAAFDPEGLIFALANGSELIKLYDLRSFDK-GP-- 176 (311)
T ss_pred CeEEecccCCeEEeeEecCCCCceEEe---------cC----CCcceeECCCCcEEEEecCCCeEEEEEecccCC-CC--
Confidence 468999999999999998665322211 11 233578999999999999999999999875311 00
Q ss_pred eeecCCCceEEeccCCcceeeEEEe---eCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFS---LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 602 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~---~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~ 602 (1057)
...+. ......+.|.|||||+++..++..+.+.++|.-+|.++.++........--.
T Consensus 177 --------------------F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 177 --------------------FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred --------------------ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 01222 2366889999999999999999999999999999998887765322221114
Q ss_pred EEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 603 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 603 sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
+.+|. ||++.+++|+.||+|.+|++++|+.+...
T Consensus 237 ~a~ft----------------------Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 237 SATFT----------------------PDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred eEEEC----------------------CCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 56676 99999999999999999999999887654
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=2e-16 Score=163.91 Aligned_cols=324 Identities=15% Similarity=0.160 Sum_probs=231.1
Q ss_pred cEEEEcCCCeEEEEE---cCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEEE
Q 001538 8 RIKVIGGDGIEGLLI---SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMY 83 (1057)
Q Consensus 8 ~I~v~g~~~~e~~~~---~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l~ 83 (1057)
-|-.|....+.+.+. ..++..|.+++--..+..+.+++.|.+-.||.+++++++.++..+ +.|.++.|.+++.+++
T Consensus 127 ivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 127 IVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred heeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEE
Confidence 344565444333221 235678999999888888999999999999999999999999754 8999999999999999
Q ss_pred EEccCCcEEEEEEeCCCCcee-ccCc------c-------cchhhhhhhcC-----CC----CCCCCCeEEEEeCcCCCC
Q 001538 84 IGDENGLMSVIKYDADEGKLF-QLPY------N-------ISADALSEKAG-----FP----LLSHQPVVGVLPHPNSSG 140 (1057)
Q Consensus 84 vG~~~G~v~v~~~d~~~~~l~-~~~~------~-------i~~~~~~~~~g-----~~----~~~~~~V~sI~~sP~d~g 140 (1057)
+++.|++..||.+...=.... ..|- . .+....++..+ .| .+|.++|.+..|-. .|
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg 284 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GG 284 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Cc
Confidence 999999999998543200000 0000 0 00000000111 11 35677788888876 58
Q ss_pred CeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001538 141 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 220 (1057)
Q Consensus 141 ~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~ 220 (1057)
+++++++.|.+..|||+.+|++++.+.+ | ..+++..+-| |+.+.++|.+.
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge~v~~LtG---------H--------------------d~ELtHcstH-ptQrLVvTsSr 334 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGEVVNILTG---------H--------------------DSELTHCSTH-PTQRLVVTSSR 334 (481)
T ss_pred ceeeeeeccccceeeeeccCceeccccC---------c--------------------chhccccccC-CcceEEEEecc
Confidence 8999999999999999999999998887 3 6677778889 99999999999
Q ss_pred CCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCc
Q 001538 221 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 300 (1057)
Q Consensus 221 DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~ 300 (1057)
|-+.++||.... | ..+ .|
T Consensus 335 DtTFRLWDFRea-------------I--------------~sV------------------------------~V----- 352 (481)
T KOG0300|consen 335 DTTFRLWDFREA-------------I--------------QSV------------------------------AV----- 352 (481)
T ss_pred CceeEeccchhh-------------c--------------cee------------------------------ee-----
Confidence 999999998421 1 011 00
Q ss_pred ccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCccccccc
Q 001538 301 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 380 (1057)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l 380 (1057)
|
T Consensus 353 ----------------------------------------------------F--------------------------- 353 (481)
T KOG0300|consen 353 ----------------------------------------------------F--------------------------- 353 (481)
T ss_pred ----------------------------------------------------e---------------------------
Confidence 0
Q ss_pred CCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEE
Q 001538 381 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIW 460 (1057)
Q Consensus 381 ~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriW 460 (1057)
.+|...||.+.|..+ ..+++|+.|.+|++|
T Consensus 354 QGHtdtVTS~vF~~d--------------------------------------------------d~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTD--------------------------------------------------DRVVSGSDDRTVKVW 383 (481)
T ss_pred cccccceeEEEEecC--------------------------------------------------CceeecCCCceEEEe
Confidence 002333444444210 137899999999999
Q ss_pred ecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccC
Q 001538 461 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 540 (1057)
Q Consensus 461 d~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 540 (1057)
|+.... .++.++ ..+ .+++.|+.|-....+|.-..+..|+|||+..++...
T Consensus 384 dLrNMR-splATI-------Rtd---S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR------------------ 434 (481)
T KOG0300|consen 384 DLRNMR-SPLATI-------RTD---SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR------------------ 434 (481)
T ss_pred eecccc-Ccceee-------ecC---CccceeEeecCCceEEeccCCceEEEEecCCCcccc------------------
Confidence 987654 233332 222 489999999988899999999999999998775431
Q ss_pred CcceeeEEEeeCCCCeEEEEEcCCCC--EEEEEeCCceEEEEeCCCCe
Q 001538 541 KISLCRAVFSLVNSPVRALQFTSSGA--KLAVGFECGRVAVLDMNLLS 586 (1057)
Q Consensus 541 ~g~~~~~~~~~h~~~ItsLa~S~~g~--~lA~G~~dG~V~vwDi~~~~ 586 (1057)
+|+..-++|..-|+|.+|+.+-. -|.+++.|..+.=|.+..++
T Consensus 435 ---lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 435 ---LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ---CCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 23334568999999999986543 37788889999999987664
No 108
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.7e-15 Score=173.58 Aligned_cols=527 Identities=17% Similarity=0.225 Sum_probs=281.5
Q ss_pred ccccCCcEEEEcCCCeEEEEEcC-CCCCeeEEEEEcCCc---EEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEec
Q 001538 2 CLCRDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQG---FLISITNDNEIQVWSLESRSLACCLKWESNITAFSVIS 77 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~~~~~-~~~~v~~L~F~~~~~---~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp 77 (1057)
+.+.+..|+||-....+++-.++ +..+++.+.+.|... |++.++.||+|+|||...+.++.++....++.++...|
T Consensus 32 ~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~ 111 (792)
T KOG1963|consen 32 FLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKP 111 (792)
T ss_pred EEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEech
Confidence 45567788999877777665444 467899999988554 78899999999999999999999997666665555432
Q ss_pred C----CcEEEEEccCCcEEEEEEeCCCCceeccC--cccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCE
Q 001538 78 G----SHFMYIGDENGLMSVIKYDADEGKLFQLP--YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 151 (1057)
Q Consensus 78 ~----~~~l~vG~~~G~v~v~~~d~~~~~l~~~~--~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~ 151 (1057)
. ...++++.++- +++..-. .++.... +.+.... .....+-+++.. -.+|.+++ .|. +.....++.
T Consensus 112 ~~a~~s~~~~~s~~~~--~~~~~~s--~~~~~q~~~~~~~t~~-~~~~d~~~~~~~-~~~I~~~~--~ge-~~~i~~~~~ 182 (792)
T KOG1963|consen 112 AQADISANVYVSVEDY--SILTTFS--KKLSKQSSRFVLATFD-SAKGDFLKEHQE-PKSIVDNN--SGE-FKGIVHMCK 182 (792)
T ss_pred hHhCccceeEeecccc--eeeeecc--cccccceeeeEeeecc-ccchhhhhhhcC-CccEEEcC--Cce-EEEEEEeee
Confidence 1 22344444444 2222101 1111111 1111100 011111111211 46778888 576 444555666
Q ss_pred EEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 152 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 152 I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
+.+|++.++. .++..+ +... .+.-.+++.++| |+++++|+|..||.|.+|.--.
T Consensus 183 ~~~~~v~~~~-~~~~~~-~~~~-----------------------~Htf~~t~~~~s-pn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 183 IHIYFVPKHT-KHTSSR-DITV-----------------------HHTFNITCVALS-PNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred EEEEEecccc-eeeccc-hhhh-----------------------hhcccceeEEec-cccceEEEeccCCcEEEEeccc
Confidence 6799998766 333222 2221 225558999999 9999999999999999996533
Q ss_pred --CCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCccccccccee
Q 001538 232 --TASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRC 309 (1057)
Q Consensus 232 --~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~ 309 (1057)
+.. .....+.|+ ..+|..+.|+. +|..+.+||.+ ..+.+ |+++....+-
T Consensus 237 ~~~~~---------~t~t~lHWH----~~~V~~L~fS~--------~G~~LlSGG~E----~VLv~----Wq~~T~~kqf 287 (792)
T KOG1963|consen 237 SSDDS---------ETCTLLHWH----HDEVNSLSFSS--------DGAYLLSGGRE----GVLVL----WQLETGKKQF 287 (792)
T ss_pred ccccc---------ccceEEEec----ccccceeEEec--------CCceEeecccc----eEEEE----EeecCCCccc
Confidence 111 112333443 34677777764 56677788876 45555 4443433222
Q ss_pred eeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCC--CCcccccccCC---CC
Q 001538 310 VSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSV--CPVEFPGVIPI---SD 384 (1057)
Q Consensus 310 ~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~--~~~~~~~~l~~---~~ 384 (1057)
.. .+.+++..+.+.|++. ...+.++|++|++.....+.....- +|-... .....+..+.. .+
T Consensus 288 LP----RLgs~I~~i~vS~ds~--------~~sl~~~DNqI~li~~~dl~~k~tI-sgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 288 LP----RLGSPILHIVVSPDSD--------LYSLVLEDNQIHLIKASDLEIKSTI-SGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred cc----ccCCeeEEEEEcCCCC--------eEEEEecCceEEEEeccchhhhhhc-cCccCCCccccccccccceeEEEc
Confidence 22 2456788888776553 4555677889988654332211110 010000 00000111100 11
Q ss_pred CcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCC---CCCCccccCCCCcEEEEE--------eC
Q 001538 385 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVP---SPVPITKCHSVDRVYLAG--------YH 453 (1057)
Q Consensus 385 ~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~---~~~~~~~~~~~~~~liTG--------~~ 453 (1057)
|......+..-+. . -.|+....-..- ..+.-...+ ...|-+. ..... ..+..+++++|+ +.
T Consensus 355 pr~~~~vln~~~g---~-vQ~ydl~td~~i--~~~~v~~~n-~~~~~~n~~v~itav-~~~~~gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 355 PRTNSLVLNGHPG---H-VQFYDLYTDSTI--YKLQVCDEN-YSDGDVNIQVGITAV-ARSRFGSWMATLEARIDKFNFF 426 (792)
T ss_pred CCCCceeecCCCc---e-EEEEecccccee--eeEEEEeec-ccCCcceeEEeeeee-hhhccceEEEEeeeeehhhhcc
Confidence 1111111111000 0 011110000000 000000000 0111100 00111 234448888886 56
Q ss_pred CCc--EEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCC-C-eEEEEecCccEEEEEecCCCCccceeeeec
Q 001538 454 DGS--VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-S-SLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 529 (1057)
Q Consensus 454 DGt--VriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~-~-~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~ 529 (1057)
||. +|||-..... .-+.|.+.+. . .|...+.+..|++.. . .+++++.||.++||-+...+....
T Consensus 427 ~~e~~LKFW~~n~~~--kt~~L~T~I~---~-PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k------ 494 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNS--KTFILNTKIN---N-PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK------ 494 (792)
T ss_pred CceEEEEEEEEcCCc--ceeEEEEEEe---c-CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc------
Confidence 654 6889765543 1233443332 2 455556555555433 3 688999999999999966543211
Q ss_pred CCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeec
Q 001538 530 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEF 609 (1057)
Q Consensus 530 ~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~ 609 (1057)
...+..|...-.-|+.++++++||.||..||+|.++ +|.+||..+...+..... ....++..+.|...
T Consensus 495 ---------~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~-~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~ 562 (792)
T KOG1963|consen 495 ---------KSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD-TITIWDYDTKNELLCTEG--SRNWPIAELLFTAQ 562 (792)
T ss_pred ---------CccceEEeeeeccccCcccchhhcCCCcEEEEecCC-EEEEecCCChhhhhcccc--ccccchHhHhhhcc
Confidence 012223333433489999999999999887777765 699999988533322211 12345555555411
Q ss_pred cCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeec
Q 001538 610 KNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 657 (1057)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~ 657 (1057)
......++.....++.+|++-++.++-.
T Consensus 563 --------------------~~~~~~~~~~~~~~l~~WNll~~~l~w~ 590 (792)
T KOG1963|consen 563 --------------------TQNDGALVHATQQRLSVWNLLSMSLIWN 590 (792)
T ss_pred --------------------cccccceeeccCceEehHhhhhhheecc
Confidence 0112244556678899999887777653
No 109
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.74 E-value=8.1e-16 Score=182.00 Aligned_cols=151 Identities=18% Similarity=0.286 Sum_probs=124.7
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeee-ec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC-LK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~t-l~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
..-+.+++|. .+++++++.+++|++||..++..+.+ +. +.+.|+++++...++++++|+.|.+++||++.. ++.
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--g~C 283 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--GEC 283 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--CcE
Confidence 3457788888 44799999999999999999998777 64 558999999998899999999999999998554 333
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
+ ..+ ..|.+.|.++...+. ++++|+.|.+|++|++.++..++++.+ |
T Consensus 284 ~---~~l------------~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~---------h----- 330 (537)
T KOG0274|consen 284 T---HSL------------QGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRG---------H----- 330 (537)
T ss_pred E---EEe------------cCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEecc---------c-----
Confidence 3 111 235677999998873 477788999999999999999999885 3
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
...|.++..+ +..+++|+.||+|++||+.+
T Consensus 331 ---------------~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 331 ---------------TGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred ---------------cccEEEEEec---CCEEEEEecCceEEEEEhhh
Confidence 7889999877 88999999999999999954
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.9e-16 Score=160.91 Aligned_cols=159 Identities=14% Similarity=0.194 Sum_probs=126.3
Q ss_pred EEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCC
Q 001538 20 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 99 (1057)
Q Consensus 20 ~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~ 99 (1057)
.+.-|....|..|.|+|..++|++++-||+++++|+....+...+.+..++.+++|.+ -..+++|+.||.|+++++...
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 3445556789999999999999999999999999999988888888899999999987 456889999996666655443
Q ss_pred CCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccC
Q 001538 100 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 179 (1057)
Q Consensus 100 ~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (1057)
.. ..| ..|..+|.||.+.+. .| .+++|+.|++|++||.+....+..+..
T Consensus 86 ~~------~~i------------gth~~~i~ci~~~~~-~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~----------- 134 (323)
T KOG1036|consen 86 NE------DQI------------GTHDEGIRCIEYSYE-VG-CVISGSWDKTIKFWDPRNKVVVGTFDQ----------- 134 (323)
T ss_pred cc------eee------------ccCCCceEEEEeecc-CC-eEEEcccCccEEEEecccccccccccc-----------
Confidence 21 112 235678999999995 35 499999999999999987444433332
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 180 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 180 ~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
.++|.++... |+.|++|..|..+.+||+++-
T Consensus 135 -------------------~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 135 -------------------GKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred -------------------CceEEEEecc---CCEEEEeecCceEEEEEcccc
Confidence 4578888755 889999999999999999764
No 111
>PTZ00420 coronin; Provisional
Probab=99.73 E-value=1.5e-15 Score=180.38 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=123.3
Q ss_pred EEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecC-CCeEEEEecCccEEEEEecCCCCccceeeee
Q 001538 450 AGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVL 528 (1057)
Q Consensus 450 TG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd-~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~ 528 (1057)
+|+.+|.|++|+..... .+.. +.+|..+|.+++|+|+ +.+||+|+.||+|+||++........
T Consensus 49 gGG~~gvI~L~~~~r~~--~v~~---------L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----- 112 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP--PVIK---------LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----- 112 (568)
T ss_pred CCCceeEEEeeecCCCc--eEEE---------EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----
Confidence 46678899999876543 2322 3478899999999997 78999999999999999975321100
Q ss_pred cCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCE-EEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEe
Q 001538 529 ETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK-LAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 529 ~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~-lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~ 607 (1057)
.+ ..|...+.+|...|++++|+|++.. ||+|+.||+|+|||++++..++.+. +...|.+++|+
T Consensus 113 -------~i-----~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slsws 176 (568)
T PTZ00420 113 -------EI-----KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWN 176 (568)
T ss_pred -------cc-----ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEEC
Confidence 00 0123467789999999999999875 5899999999999999998776653 45789999998
Q ss_pred eccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 608 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
|++.+|++++.|+.|++||..+++++...
T Consensus 177 ----------------------pdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 177 ----------------------IKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred ----------------------CCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 88999999999999999999998877543
No 112
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.73 E-value=1.8e-14 Score=160.94 Aligned_cols=140 Identities=15% Similarity=0.201 Sum_probs=100.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE-EEccCCcEEEEEEeCCCCceeccCcccchhhhhhh
Q 001538 40 FLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 118 (1057)
Q Consensus 40 ~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~-vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~ 118 (1057)
.+++.+.|+.|.+||+.+++.+..+.....+.+++++|++..+| ++..++.|.+|+ ...+++. ..++.
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d--~~~~~~~---~~~~~------ 71 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVID--LATGEVI---GTLPS------ 71 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEE--CCCCcEE---EeccC------
Confidence 57788899999999999999888887666678899999999875 566788666655 4444333 11110
Q ss_pred cCCCCCCCCCeEEEEeCcCCCCCeEEEEE-CCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCC
Q 001538 119 AGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 197 (1057)
Q Consensus 119 ~g~~~~~~~~V~sI~~sP~d~g~~lli~~-~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 197 (1057)
...+..+.|+| +++.++++. .++.|.+||+.+++.+..+..
T Consensus 72 -------~~~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----------------------------- 113 (300)
T TIGR03866 72 -------GPDPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV----------------------------- 113 (300)
T ss_pred -------CCCccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------------------------
Confidence 12246788999 577676654 589999999998887766543
Q ss_pred CCCCeEEEEEecCCCCEEEEEEcCCc-EEEEeCC
Q 001538 198 EEKEISALCWASSSGSILAVGYIDGD-ILLWNTS 230 (1057)
Q Consensus 198 ~~~~Vtsl~ws~pdG~~latg~~DG~-I~lWd~~ 230 (1057)
...+.+++|+ |||..++++..++. +.+||..
T Consensus 114 -~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 114 -GVEPEGMAVS-PDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred -CCCcceEEEC-CCCCEEEEEecCCCeEEEEeCC
Confidence 2235679999 99999998877654 4555653
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.72 E-value=1e-15 Score=158.68 Aligned_cols=167 Identities=17% Similarity=0.366 Sum_probs=131.2
Q ss_pred EcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCC-----------------C-ceeeeec-CCCCEEEEEEecCCcEE
Q 001538 22 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-----------------R-SLACCLK-WESNITAFSVISGSHFM 82 (1057)
Q Consensus 22 ~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s-----------------~-~~l~tl~-~~~~Ita~~~sp~~~~l 82 (1057)
...++.|+++-+|++||.++++++.|-.|+|.|++. + -++.++- +-..|+++.|.|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 345678999999999999999999999999999871 1 1133332 44789999999999999
Q ss_pred EEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE
Q 001538 83 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 162 (1057)
Q Consensus 83 ~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~ 162 (1057)
++|+.|++|+++++....-+ ..|++-. ...+|.+|.||| .|..||+|.++-+++|||+.+-++
T Consensus 188 iS~srD~tvKlFDfsK~saK---rA~K~~q------------d~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAK---RAFKVFQ------------DTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred EeccCCCeEEEEecccHHHH---HHHHHhh------------ccceeeeEeecC--CCceEEEecCCCceeEEeccceeE
Confidence 99999999999887532211 1122221 246899999999 699999999999999999998776
Q ss_pred EEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 163 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
...... +..+...|+++.++ ++|+.-+||+.||.|++||--++
T Consensus 251 fvsanP--------------------------d~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGVS~ 293 (430)
T KOG0640|consen 251 FVSANP--------------------------DDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGVSN 293 (430)
T ss_pred eeecCc--------------------------ccccccceeEEEec-CCccEEEEeccCCcEEeeccccH
Confidence 533211 12347899999999 99999999999999999997554
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=3.2e-16 Score=171.22 Aligned_cols=143 Identities=19% Similarity=0.163 Sum_probs=115.3
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCc
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 521 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~ 521 (1057)
++++..|-||+-|.+||-||...+...+.+ .....|.++.+||.+.+||+|.+++.|.|....+...
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlqqh------------dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k- 626 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQH------------DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK- 626 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhhhh------------hhhhhheecccCCCccceeeecccCcEEEEecCCccc-
Confidence 344456788889999999999887621111 1234788999999999999999999998876654322
Q ss_pred cceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCe
Q 001538 522 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI 601 (1057)
Q Consensus 522 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V 601 (1057)
..+..|.+.|.+|.|++-|+++++-+.|..+..|..--+.-+|... -+++|
T Consensus 627 -------------------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----E~SsV 677 (705)
T KOG0639|consen 627 -------------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSV 677 (705)
T ss_pred -------------------------eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----ccCcc
Confidence 1456799999999999999999999999999999988788887653 46889
Q ss_pred EEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 602 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 602 ~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
.|+..+ .|.+++++|+.|....||.
T Consensus 678 lsCDIS----------------------~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 678 LSCDIS----------------------FDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred eeeeec----------------------cCceEEEecCCCcceEEEE
Confidence 999887 7789999999998888774
No 115
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.71 E-value=8.4e-16 Score=159.27 Aligned_cols=290 Identities=17% Similarity=0.204 Sum_probs=176.7
Q ss_pred CCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCC----eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCC
Q 001538 123 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA----QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 198 (1057)
Q Consensus 123 ~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 198 (1057)
..|.+++.+-+|+| +|.++++|+.|..|+|.|+..- +......+ +-|..|.+ +..--++
T Consensus 109 t~HK~~cR~aafs~--DG~lvATGsaD~SIKildvermlaks~~~em~~~-~~qa~hPv--------------IRTlYDH 171 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSP--DGSLVATGSADASIKILDVERMLAKSKPKEMISG-DTQARHPV--------------IRTLYDH 171 (430)
T ss_pred eecccceeeeeeCC--CCcEEEccCCcceEEEeehhhhhhhcchhhhccC-CcccCCce--------------Eeehhhc
Confidence 35788999999999 7999999999999999998622 11111111 11111100 0000023
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCce
Q 001538 199 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR 278 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~ 278 (1057)
..+|.++.|| |....|++|+.|++|+++|+..... |-.+..-....||.++.+.+ .|.
T Consensus 172 ~devn~l~FH-Pre~ILiS~srD~tvKlFDfsK~sa-------------KrA~K~~qd~~~vrsiSfHP--------sGe 229 (430)
T KOG0640|consen 172 VDEVNDLDFH-PRETILISGSRDNTVKLFDFSKTSA-------------KRAFKVFQDTEPVRSISFHP--------SGE 229 (430)
T ss_pred cCcccceeec-chhheEEeccCCCeEEEEecccHHH-------------HHHHHHhhccceeeeEeecC--------CCc
Confidence 6789999999 9999999999999999999965421 10011111234555553321 111
Q ss_pred EEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccch
Q 001538 279 LFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASL 358 (1057)
Q Consensus 279 Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~ 358 (1057)
.+++.++.-.+++||....
T Consensus 230 -------------------------------------------------------------fllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 230 -------------------------------------------------------------FLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred -------------------------------------------------------------eEEEecCCCceeEEeccce
Confidence 2333344446777774333
Q ss_pred hhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCc
Q 001538 359 TTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPI 438 (1057)
Q Consensus 359 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~ 438 (1057)
.++++ .+.+. .++|++..+
T Consensus 249 Qcfvs-------------------------------anPd~---------------------------qht~ai~~V--- 267 (430)
T KOG0640|consen 249 QCFVS-------------------------------ANPDD---------------------------QHTGAITQV--- 267 (430)
T ss_pred eEeee-------------------------------cCccc---------------------------ccccceeEE---
Confidence 22221 11000 022222222
Q ss_pred cccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 439 TKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 439 ~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
..++.+++++||+.||.|||||--+.. .+.++. -+-....|++..|..+++++.+.+.|..|++|.+.++
T Consensus 268 -~Ys~t~~lYvTaSkDG~IklwDGVS~r--Cv~t~~-------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 268 -RYSSTGSLYVTASKDGAIKLWDGVSNR--CVRTIG-------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred -EecCCccEEEEeccCCcEEeeccccHH--HHHHHH-------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 256667799999999999999965443 111111 1112358999999999999999999999999999876
Q ss_pred CCcccee------------------------eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCC
Q 001538 519 LDAKNFL------------------------FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC 574 (1057)
Q Consensus 519 ~~~~~~~------------------------~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~d 574 (1057)
+...... +.++....+..|....+-.....-.+|++++.++.-||.+.-+.+|+.|
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc
Confidence 5321100 0001112222232222111111233699999999999999999999999
Q ss_pred ceEEEEeCC
Q 001538 575 GRVAVLDMN 583 (1057)
Q Consensus 575 G~V~vwDi~ 583 (1057)
-..++|-.+
T Consensus 418 ~raRFWyrr 426 (430)
T KOG0640|consen 418 FRARFWYRR 426 (430)
T ss_pred ceeeeeeec
Confidence 999999654
No 116
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=1.5e-16 Score=168.36 Aligned_cols=279 Identities=17% Similarity=0.232 Sum_probs=183.2
Q ss_pred CCCeeEEEEEcCC-cEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 26 QLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 26 ~~~v~~L~F~~~~-~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
+..|.+|+=.|++ ..+++++.||.|++||+.++.+..++. +.+.|..++++. ..+++..+|.+|+.|.++...
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p--- 140 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP--- 140 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCc---
Confidence 3445555555555 458899999999999999999998887 557999999988 555556677889999987631
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
. ..+.. .+.+..|.-+-. ++.+++.++ .|-|||.....+++.+.-+
T Consensus 141 ~---~tilg-------------~s~~~gIdh~~~--~~~FaTcGe--~i~IWD~~R~~Pv~smswG-------------- 186 (433)
T KOG0268|consen 141 L---HTILG-------------KSVYLGIDHHRK--NSVFATCGE--QIDIWDEQRDNPVSSMSWG-------------- 186 (433)
T ss_pred c---eeeec-------------cccccccccccc--cccccccCc--eeeecccccCCccceeecC--------------
Confidence 1 11111 234555555442 333555544 4668999888887766541
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEE
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 262 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG-~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~ 262 (1057)
...|.++.|+ |.. ..|+++.+|++|.++|+..+. |+.|+.+... -..
T Consensus 187 ---------------~Dti~svkfN-pvETsILas~~sDrsIvLyD~R~~~-----------Pl~KVi~~mR-----TN~ 234 (433)
T KOG0268|consen 187 ---------------ADSISSVKFN-PVETSILASCASDRSIVLYDLRQAS-----------PLKKVILTMR-----TNT 234 (433)
T ss_pred ---------------CCceeEEecC-CCcchheeeeccCCceEEEecccCC-----------ccceeeeecc-----ccc
Confidence 5679999999 665 667888899999999997653 4444322211 112
Q ss_pred EEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEE
Q 001538 263 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 342 (1057)
Q Consensus 263 l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv 342 (1057)
+.|.+ ..- .++
T Consensus 235 IswnP--------eaf-------------------------------------------------------------nF~ 245 (433)
T KOG0268|consen 235 ICWNP--------EAF-------------------------------------------------------------NFV 245 (433)
T ss_pred eecCc--------ccc-------------------------------------------------------------cee
Confidence 33321 111 233
Q ss_pred EEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCC
Q 001538 343 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 422 (1057)
Q Consensus 343 ~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (1057)
+..++-.|++|| +.+- ..|...
T Consensus 246 ~a~ED~nlY~~D-------mR~l---------~~p~~v------------------------------------------ 267 (433)
T KOG0268|consen 246 AANEDHNLYTYD-------MRNL---------SRPLNV------------------------------------------ 267 (433)
T ss_pred eccccccceehh-------hhhh---------cccchh------------------------------------------
Confidence 344566788888 3211 000000
Q ss_pred CCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEE
Q 001538 423 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 502 (1057)
Q Consensus 423 ~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~La 502 (1057)
+.|++.++..+ +++|.|+-+++|+.|.+|||+.+..+.-..+|.-+ .+ ..|.||.|+.|+++++
T Consensus 268 -----~~dhvsAV~dV-dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk------RM----q~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 268 -----HKDHVSAVMDV-DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK------RM----QHVFCVKYSMDSKYII 331 (433)
T ss_pred -----hcccceeEEEe-ccCCCcchhccccccceEEEeecCCCcchhhhhHh------hh----heeeEEEEeccccEEE
Confidence 22333333333 58888899999999999999999877533332211 11 2699999999999999
Q ss_pred EEecCccEEEEEecCC
Q 001538 503 VGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 503 vg~~dG~V~l~~~~~~ 518 (1057)
+|+.||.|++|+-...
T Consensus 332 SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 332 SGSDDGNVRLWKAKAS 347 (433)
T ss_pred ecCCCcceeeeecchh
Confidence 9999999999997644
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=4.6e-16 Score=175.37 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=114.9
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~ 523 (1057)
.+.++++|+..+-+|+||..+..- -+.+.||+..|.++-.++||+.+++|+.||+|++|++...
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~k-----------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----- 245 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKK-----------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----- 245 (735)
T ss_pred cceEEEecCcccceEEeccccccc-----------eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-----
Confidence 335799999999999999887651 1345699999999999999999999999999999999654
Q ss_pred eeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEE
Q 001538 524 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIIS 603 (1057)
Q Consensus 524 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~s 603 (1057)
.|+.++..|+..|++|..+|+-.++-+|+.||.|..=|+++++.. +.-+ ....||..
T Consensus 246 --------------------rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tlic--k~daPv~~ 302 (735)
T KOG0308|consen 246 --------------------RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLIC--KEDAPVLK 302 (735)
T ss_pred --------------------ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhh-eEee--cCCCchhh
Confidence 245678899999999999999999999999999999999885321 1111 13456777
Q ss_pred EEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 604 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 604 l~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
+..... .+-+.++|.|++|+-|-.
T Consensus 303 l~~~~~----------------------~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 303 LHLHEH----------------------DNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred hhhccc----------------------cCCceeeeccccceecCC
Confidence 666532 222488999999999953
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=5.3e-15 Score=154.37 Aligned_cols=155 Identities=16% Similarity=0.280 Sum_probs=123.3
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCc--EEEEEccCCcEEEEEEeCCCC
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEG 101 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~--~l~vG~~~G~v~v~~~d~~~~ 101 (1057)
+..++++|+. ++.|+++++.|.+|+|||+.++..+..+. +.+.|||+.|.+... +|+.|.+||.|.+|. .+.+
T Consensus 42 H~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~--~~~W 117 (362)
T KOG0294|consen 42 HAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR--VGSW 117 (362)
T ss_pred cccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE--cCCe
Confidence 4678999887 57799999999999999999988877775 458999999998765 999999999777775 4333
Q ss_pred ceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCC
Q 001538 102 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 181 (1057)
Q Consensus 102 ~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p 181 (1057)
.+. +.-++|...|+.|+.|| .|++.|+.++|+.+++|||.+|+.-....-
T Consensus 118 ~~~---------------~slK~H~~~Vt~lsiHP--S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L------------- 167 (362)
T KOG0294|consen 118 ELL---------------KSLKAHKGQVTDLSIHP--SGKLALSVGGDQVLRTWNLVRGRVAFVLNL------------- 167 (362)
T ss_pred EEe---------------eeecccccccceeEecC--CCceEEEEcCCceeeeehhhcCccceeecc-------------
Confidence 322 12255667799999999 699888999999999999999987665543
Q ss_pred CCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 182 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
...-+.+.|+ |.|.+++.+..+ .|-+|.+.+.
T Consensus 168 -----------------~~~at~v~w~-~~Gd~F~v~~~~-~i~i~q~d~A 199 (362)
T KOG0294|consen 168 -----------------KNKATLVSWS-PQGDHFVVSGRN-KIDIYQLDNA 199 (362)
T ss_pred -----------------CCcceeeEEc-CCCCEEEEEecc-EEEEEecccH
Confidence 2233459999 999998888765 6888888653
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=2e-15 Score=156.62 Aligned_cols=150 Identities=13% Similarity=0.216 Sum_probs=121.1
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
+.++|++.|.+..+||+.++++ +.. +.||....+.++-.|..+++++.+.|-+.++|||+..-
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge~--v~~---------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI------ 347 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGEV--VNI---------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI------ 347 (481)
T ss_pred ceeeeeeccccceeeeeccCce--ecc---------ccCcchhccccccCCcceEEEEeccCceeEeccchhhc------
Confidence 3689999999999999999983 333 34888899999999999999999999999999997421
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCC-eEEEEeecCCCCCCCeEEE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL-SVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~-~~l~~~~~~~g~~~~V~sl 604 (1057)
+.+.+|++|...|++..|.-+. .+++|++|.+|+|||+++. ..+.++. ..+++..+
T Consensus 348 ------------------~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRv 404 (481)
T KOG0300|consen 348 ------------------QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRV 404 (481)
T ss_pred ------------------ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee----cCCcccee
Confidence 2245899999999999999887 7899999999999999764 3455554 36788888
Q ss_pred EEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 605 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 605 ~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
+.+ -...+++.--....|++||+. |+.+...
T Consensus 405 avs----------------------~g~~iIAiPhDNRqvRlfDln-G~RlaRl 435 (481)
T KOG0300|consen 405 AVS----------------------KGHPIIAIPHDNRQVRLFDLN-GNRLARL 435 (481)
T ss_pred Eee----------------------cCCceEEeccCCceEEEEecC-CCccccC
Confidence 887 335577777888999999986 4544433
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=8e-15 Score=152.77 Aligned_cols=162 Identities=12% Similarity=0.145 Sum_probs=110.6
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCc
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 521 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~ 521 (1057)
...+.+|+|++.|..|.|||.....|+ .++++ ...-+..+.+|+|+++|+++-.-+|++|..--.+.
T Consensus 196 A~~~k~imsas~dt~i~lw~lkGq~L~---~idtn---------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd- 262 (420)
T KOG2096|consen 196 AGNAKYIMSASLDTKICLWDLKGQLLQ---SIDTN---------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD- 262 (420)
T ss_pred cCCceEEEEecCCCcEEEEecCCceee---eeccc---------cccccceeeCCCCcEEEEecCCCCceEEEEEeccC-
Confidence 445568999999999999999854432 22221 12455678899999999999999999998622110
Q ss_pred cceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCC-------CCeEEEEeec-
Q 001538 522 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN-------LLSVLFFTDD- 593 (1057)
Q Consensus 522 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~-------~~~~l~~~~~- 593 (1057)
|++..+. -...+.+|.+.|++++|||+...+++.+.||+.+|||+. ++.++.....
T Consensus 263 ----------G~fqev~------rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 263 ----------GTFQEVK------RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred ----------cchhhhh------hhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 0111110 013577899999999999999999999999999999983 3444433311
Q ss_pred CCC-CCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceee
Q 001538 594 ISG-SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 656 (1057)
Q Consensus 594 ~~g-~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~ 656 (1057)
+.. -+.|+ .|+.+ |.++.|++ +...++.++..++|+...
T Consensus 327 l~aag~~p~-RL~ls----------------------P~g~~lA~-s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 327 LHAAGSEPV-RLELS----------------------PSGDSLAV-SFGSDLKVFASEDGKDYP 366 (420)
T ss_pred hhhcCCCce-EEEeC----------------------CCCcEEEe-ecCCceEEEEcccCccch
Confidence 111 12333 56655 77887765 556778888888876543
No 121
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=5.8e-15 Score=153.31 Aligned_cols=118 Identities=20% Similarity=0.354 Sum_probs=94.1
Q ss_pred CCCCEEEEEEecCCcEE-EEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEE
Q 001538 66 WESNITAFSVISGSHFM-YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 144 (1057)
Q Consensus 66 ~~~~Ita~~~sp~~~~l-~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~ll 144 (1057)
.+..|.+++|+|..+.| +.|+=||+||+|.+... +.+. |- ....+.+||.+++|+- +|+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~--~k------------a~~~~~~PvL~v~Wsd--dgskVf 88 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLV--PK------------AQQSHDGPVLDVCWSD--DGSKVF 88 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecC-Cccc--ch------------hhhccCCCeEEEEEcc--CCceEE
Confidence 34689999999965554 48888999999987543 4443 21 1123578999999997 799999
Q ss_pred EEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCC--EEEEEEcCC
Q 001538 145 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS--ILAVGYIDG 222 (1057)
Q Consensus 145 i~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~--~latg~~DG 222 (1057)
+|+.|+.+++|||.++++.++-- | ..+|.++.|- +... .|+||+=|.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~~v~~----------H--------------------d~pvkt~~wv-~~~~~~cl~TGSWDK 137 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVSQVAA----------H--------------------DAPVKTCHWV-PGMNYQCLVTGSWDK 137 (347)
T ss_pred eeccCCceEEEEccCCCeeeeee----------c--------------------ccceeEEEEe-cCCCcceeEeccccc
Confidence 99999999999999998766533 3 7899999998 5554 799999999
Q ss_pred cEEEEeCCC
Q 001538 223 DILLWNTST 231 (1057)
Q Consensus 223 ~I~lWd~~~ 231 (1057)
+|++||.+.
T Consensus 138 TlKfWD~R~ 146 (347)
T KOG0647|consen 138 TLKFWDTRS 146 (347)
T ss_pred ceeecccCC
Confidence 999999964
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.1e-15 Score=160.71 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=117.3
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
++.+++.|+..+.+|.|-+||+........++..+. ..=++++.++++.+||+|+..|-|.||+......
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~----------v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS----------VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc----------cceeeeeecCCCceEEeccCcceEEEeccchhhc
Confidence 456667788888899999999988753222222211 1235566669999999999999999999654211
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeC--CceEEEEeCCCCeEEEEeecCCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE--CGRVAVLDMNLLSVLFFTDDISGSS 598 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~--dG~V~vwDi~~~~~l~~~~~~~g~~ 598 (1057)
...+.|+..+.-....|++|+|++|++.||+++. +..++|..+-..++-.++....+.-
T Consensus 422 -------------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v 482 (514)
T KOG2055|consen 422 -------------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV 482 (514)
T ss_pred -------------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcc
Confidence 1223455566667789999999999999998874 5579999988777666655433344
Q ss_pred CCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 599 SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 599 ~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
..|+|++|+ |.+-+|++|..+|.|.+|-+
T Consensus 483 g~vtc~aFS----------------------P~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 483 GHVTCMAFS----------------------PNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cceEEEEec----------------------CCCceEEeecCCCceeeEee
Confidence 679999998 88899999999999999954
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.6e-14 Score=150.92 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=112.8
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
.+|.+++.++-+.|+.+|+||+-.+.......+++ ..+.|.|+|.|.+++++..+ .|-||.+.....
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~------------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v 201 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN------------KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV 201 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhcCccceeeccCC------------cceeeEEcCCCCEEEEEecc-EEEEEecccHhH
Confidence 56666778888999999999998776333322321 34459999999999998887 588999876543
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP 600 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~ 600 (1057)
... ......+.|+.|-. +..|++|.+|+.|.+||-....+++.+.. |...
T Consensus 202 ~~~--------------------------i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~A---H~~R 251 (362)
T KOG0294|consen 202 FRE--------------------------IENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLA---HENR 251 (362)
T ss_pred hhh--------------------------hhccccceeeeecC-CceEEEecCCceEEEeccCCCccceeeec---chhh
Confidence 211 01224566777764 44999999999999999998877776654 9999
Q ss_pred eEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCc
Q 001538 601 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 652 (1057)
Q Consensus 601 V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg 652 (1057)
|..+.+.. .|++.+|++++.||.|++||.+.-
T Consensus 252 VK~i~~~~--------------------~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYT--------------------NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEe--------------------cCCceEEEEeccCceEEEEEcccc
Confidence 99998652 367899999999999999998765
No 124
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=9.6e-16 Score=172.86 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=130.7
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeec-CCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVA-GSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 522 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~-~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~ 522 (1057)
+..++++|+-|+.|.+||+..+.-+++...+. +..-++. |+..+|.+++-.+.+..+++|+..+.+++||.++.+..
T Consensus 129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki- 206 (735)
T KOG0308|consen 129 NNELVASGGLDRKIFLWDINTGTATLVASFNN-VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI- 206 (735)
T ss_pred CceeEEecCCCccEEEEEccCcchhhhhhccc-cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce-
Confidence 33478999999999999999874222333321 1111233 78889999999999999999999999999998776542
Q ss_pred ceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeE
Q 001538 523 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 602 (1057)
Q Consensus 523 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~ 602 (1057)
..+.+|...|.+|-.++||..+.+|+.||+|+|||+...++++++.. |...|.
T Consensus 207 ------------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---H~e~VW 259 (735)
T KOG0308|consen 207 ------------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV---HKEGVW 259 (735)
T ss_pred ------------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe---ccCceE
Confidence 36679999999999999999999999999999999999999999887 999999
Q ss_pred EEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 603 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 603 sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
+++-+ |+=..+++|+.||.|..=|+.+
T Consensus 260 aL~~~----------------------~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 260 ALQSS----------------------PSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EEeeC----------------------CCcceEEecCCCCcEEecccCC
Confidence 99876 5567799999999999988876
No 125
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6e-14 Score=147.37 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=118.3
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEEEEEcc--CCcEEEEEEeCCCCc
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGK 102 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l~vG~~--~G~v~v~~~d~~~~~ 102 (1057)
...|.+|.|+.+|.+|++++.|++|+|+|..+++.++++... ..+-.+.|......++.++. |-+|+.+.+. +++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~--dNk 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH--DNK 91 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee--cCc
Confidence 567999999999999999999999999999999999998644 44556666666666655555 6666666543 232
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
.. .| =.+|...|.+|..+|.+ ..+++++.|.+|++||++..++...+..
T Consensus 92 yl--RY-------------F~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~-------------- 140 (311)
T KOG1446|consen 92 YL--RY-------------FPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNL-------------- 140 (311)
T ss_pred eE--EE-------------cCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEec--------------
Confidence 22 01 13567889999999963 5699999999999999997766543322
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
..-..++|. |.|..+|+|...+.|+++|++..
T Consensus 141 -----------------~~~pi~AfD-p~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 141 -----------------SGRPIAAFD-PEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred -----------------CCCcceeEC-CCCcEEEEecCCCeEEEEEeccc
Confidence 112356789 99999999998889999999764
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=1.1e-13 Score=154.73 Aligned_cols=180 Identities=18% Similarity=0.240 Sum_probs=127.9
Q ss_pred ccccCCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEE-EEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCc
Q 001538 2 CLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSH 80 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lv-s~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~ 80 (1057)
.+..||.|++|.....+.+........+..+.|++++++|+ +++.++.|.+||+.+++.+..+.....+..++++|+++
T Consensus 6 s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 85 (300)
T TIGR03866 6 SNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGK 85 (300)
T ss_pred EecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCC
Confidence 45679999999875544444444344467899999998774 55678999999999999887776555577889999999
Q ss_pred EEEEEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC-EEEEEEcc
Q 001538 81 FMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVS 158 (1057)
Q Consensus 81 ~l~vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG-~I~lWdl~ 158 (1057)
.++++. .++.+.+|++ ...+.. ..+. ....+.+++|+| +|+.++++..++ .+.+||..
T Consensus 86 ~l~~~~~~~~~l~~~d~--~~~~~~---~~~~-------------~~~~~~~~~~~~--dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 86 ILYIANEDDNLVTVIDI--ETRKVL---AEIP-------------VGVEPEGMAVSP--DGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred EEEEEcCCCCeEEEEEC--CCCeEE---eEee-------------CCCCcceEEECC--CCCEEEEEecCCCeEEEEeCC
Confidence 887765 5786666654 333222 1111 012367899999 688888887765 56678998
Q ss_pred CCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEE-EcCCcEEEEeCCCC
Q 001538 159 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTSTT 232 (1057)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg-~~DG~I~lWd~~~~ 232 (1057)
+++....... ...+.+++|+ |||.+++++ ..||.|.+||+.++
T Consensus 146 ~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 146 TYEIVDNVLV------------------------------DQRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred CCeEEEEEEc------------------------------CCCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcc
Confidence 8877654322 2234678999 999988554 46999999999654
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.68 E-value=7.1e-15 Score=167.17 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=113.5
Q ss_pred EEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeee
Q 001538 448 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFV 527 (1057)
Q Consensus 448 liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~ 527 (1057)
+++|+.|.++|+|-...-. + ++.+|+.+|.++.+-|++ .+++|+.|.+|++|+-.+-
T Consensus 115 ~iSgSWD~TakvW~~~~l~----~---------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~--------- 171 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGELV----Y---------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTL--------- 171 (745)
T ss_pred eEecccccceEEecchhhh----c---------ccCCcchheeeeeecCCC-cEEeccCcceeeeccCCch---------
Confidence 8999999999999865432 2 245899999999999988 7899999999999975321
Q ss_pred ecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEe
Q 001538 528 LETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 528 ~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~ 607 (1057)
..+|.+|...|..|++-+++ .+++++.||.|++||+ ++.+++.++ ||++.|.++...
T Consensus 172 ------------------l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~~ 228 (745)
T KOG0301|consen 172 ------------------LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISMA 228 (745)
T ss_pred ------------------hhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee---ccceEEEEEEec
Confidence 23788999999999999887 5789999999999999 667777765 499999999854
Q ss_pred eccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 608 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
.++..+++++.|+++++|+..
T Consensus 229 ----------------------~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 229 ----------------------LSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ----------------------CCCCeEEEecCCceEEEeecC
Confidence 567889999999999999865
No 128
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=3.9e-14 Score=158.44 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=117.4
Q ss_pred EeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEec-CCCeEEEEecCccEEEEEecCCCCccceeeeec
Q 001538 451 GYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 529 (1057)
Q Consensus 451 G~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fsp-d~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~ 529 (1057)
.+..|.|-|++++.+.-.+-.++. .+ -....|+.+.|+| |...||+|++||.|+||.+..+.....
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p-~l------~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~------ 665 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMP-GL------FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN------ 665 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccc-cc------ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc------
Confidence 355789999999876421111111 00 1234799999998 556899999999999999987643211
Q ss_pred CCCceEEeccCCcceeeEEEeeCCCCeEEEEEcC-CCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEee
Q 001538 530 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 608 (1057)
Q Consensus 530 ~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~-~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~ 608 (1057)
-..|...+..|...|++|.|.| ....||+++.|-+|++||+++.+.-..+ .||...|-.++|+
T Consensus 666 ------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l---~gHtdqIf~~AWS- 729 (1012)
T KOG1445|consen 666 ------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL---VGHTDQIFGIAWS- 729 (1012)
T ss_pred ------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee---ccCcCceeEEEEC-
Confidence 1123346778999999999999 4568999999999999999988765554 4699999999999
Q ss_pred ccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcc
Q 001538 609 FKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 653 (1057)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~ 653 (1057)
|||+.+++..+||+|++|....++
T Consensus 730 ---------------------pdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 730 ---------------------PDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ---------------------CCCcceeeeecCceEEEeCCCCCC
Confidence 999999999999999999877654
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=4.2e-15 Score=170.78 Aligned_cols=290 Identities=17% Similarity=0.190 Sum_probs=188.2
Q ss_pred CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEE
Q 001538 67 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 146 (1057)
Q Consensus 67 ~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~ 146 (1057)
+..+.++++.++-..++++...- +.|+.+.+...... -++.. +.-.........|.|+-. +.++|+++
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~-lklyai~~~~~~~~---~~~~~-------k~kqn~~~S~~DVkW~~~-~~NlIAT~ 106 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSL-LKLYAINPNDFSEK---CNHRF-------KTKQNKFYSAADVKWGQL-YSNLIATC 106 (839)
T ss_pred ccccceEeecCCcceeEEecccc-eeeEeeCcccCCcc---eeeec-------ccccceeeehhhcccccc-hhhhheee
Confidence 45566777777777666654432 35655544321111 11110 000111234566788854 57789999
Q ss_pred ECCCEEEEEEccC---CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCc
Q 001538 147 YENALVILWDVSE---AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 223 (1057)
Q Consensus 147 ~~dG~I~lWdl~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~ 223 (1057)
..+|.|.+||+.. ++.+..|.- | +..|.+++||+....+|++|+.||+
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~E---------H--------------------~Rs~~~ldfh~tep~iliSGSQDg~ 157 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNE---------H--------------------ERSANKLDFHSTEPNILISGSQDGT 157 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhh---------h--------------------ccceeeeeeccCCccEEEecCCCce
Confidence 9999999999975 334333332 2 8899999999666789999999999
Q ss_pred EEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccc
Q 001538 224 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 303 (1057)
Q Consensus 224 I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~ 303 (1057)
|++||+....+....+ ...+.|
T Consensus 158 vK~~DlR~~~S~~t~~---------------~nSESi------------------------------------------- 179 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFR---------------SNSESI------------------------------------------- 179 (839)
T ss_pred EEEEeeeccccccccc---------------ccchhh-------------------------------------------
Confidence 9999997643211000 012223
Q ss_pred cccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCC
Q 001538 304 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 383 (1057)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 383 (1057)
+|+.+.|.. +..++...++|.|..|| +.++. .....+..|
T Consensus 180 ------------------RDV~fsp~~-------~~~F~s~~dsG~lqlWD-------lRqp~--------r~~~k~~AH 219 (839)
T KOG0269|consen 180 ------------------RDVKFSPGY-------GNKFASIHDSGYLQLWD-------LRQPD--------RCEKKLTAH 219 (839)
T ss_pred ------------------hceeeccCC-------CceEEEecCCceEEEee-------ccCch--------hHHHHhhcc
Confidence 333333332 23556667789999999 54432 122233345
Q ss_pred CCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecC
Q 001538 384 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 463 (1057)
Q Consensus 384 ~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~ 463 (1057)
..+|.|+. .+|++.+|+||+.|++|||||++
T Consensus 220 ~GpV~c~n-------------------------------------------------whPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 220 NGPVLCLN-------------------------------------------------WHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cCceEEEe-------------------------------------------------ecCCCceeeecCCCccEEEEecc
Confidence 55554443 34566789999999999999999
Q ss_pred CCceeEEeecccceeeeeecCCCCCEEEEEEecCCCe-EEEEe--cCccEEEEEecCCCCccceeeeecCCCceEEeccC
Q 001538 464 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS-LAVGN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 540 (1057)
Q Consensus 464 ~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~-Lavg~--~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 540 (1057)
++...++.++++ ..+|.+|.|-|+.++ ||+++ .|-.|+|||+++.
T Consensus 251 ~~~~~~~~tInT----------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP---------------------- 298 (839)
T KOG0269|consen 251 DSRAKPKHTINT----------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP---------------------- 298 (839)
T ss_pred CCCccceeEEee----------cceeeeeeeccCccchhhhhhccccceEEEEeeccc----------------------
Confidence 888666655542 248999999999885 55543 3668999999653
Q ss_pred CcceeeEEEeeCCCCeEEEEEcC-CCCEEEEEeCCceEE
Q 001538 541 KISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVA 578 (1057)
Q Consensus 541 ~g~~~~~~~~~h~~~ItsLa~S~-~g~~lA~G~~dG~V~ 578 (1057)
|.|..++..|...++.++|-. |-..|-+++.||+|.
T Consensus 299 --YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 299 --YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred --cccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 345678889999999999976 344677788887654
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.64 E-value=2.8e-14 Score=162.41 Aligned_cols=151 Identities=14% Similarity=0.231 Sum_probs=113.0
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeee--c-CCCCEEE-EEEecCCc-EEEEEccCCcEEEEEEeCC
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--K-WESNITA-FSVISGSH-FMYIGDENGLMSVIKYDAD 99 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl--~-~~~~Ita-~~~sp~~~-~l~vG~~~G~v~v~~~d~~ 99 (1057)
+..-|+.+.+.++. .+++++.|++++||+-+.++.+.+. . +.+-|.+ +++.+..+ .+++|..|+.+.+|..+..
T Consensus 13 H~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 13 HKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred CccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence 45668999988877 7999999999999998777765433 3 2344444 66665433 4999999998888876542
Q ss_pred CCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccC
Q 001538 100 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 179 (1057)
Q Consensus 100 ~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (1057)
. |+. ..++|.+.|.|++..- +++ +++|+.|.++++|-.. ++...+.+ |
T Consensus 92 ~------P~~-----------~LkgH~snVC~ls~~~--~~~-~iSgSWD~TakvW~~~--~l~~~l~g---------H- 139 (745)
T KOG0301|consen 92 E------PLY-----------TLKGHKSNVCSLSIGE--DGT-LISGSWDSTAKVWRIG--ELVYSLQG---------H- 139 (745)
T ss_pred C------chh-----------hhhccccceeeeecCC--cCc-eEecccccceEEecch--hhhcccCC---------c-
Confidence 2 322 2245778899998765 576 9999999999999874 33333333 3
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeC
Q 001538 180 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 229 (1057)
Q Consensus 180 ~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~ 229 (1057)
+..|+++..- |++ .++||+.|.+|++|.-
T Consensus 140 -------------------~asVWAv~~l-~e~-~~vTgsaDKtIklWk~ 168 (745)
T KOG0301|consen 140 -------------------TASVWAVASL-PEN-TYVTGSADKTIKLWKG 168 (745)
T ss_pred -------------------chheeeeeec-CCC-cEEeccCcceeeeccC
Confidence 8899999998 777 8999999999999976
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=6.4e-14 Score=145.90 Aligned_cols=159 Identities=19% Similarity=0.258 Sum_probs=112.6
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeee--eecCCCCCEEEEEEecCC---CeEEEEecC-----ccEEEEEe
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGI--EVAGSRAPVSTLSFCFIN---SSLAVGNEF-----GLVYIYNL 515 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i--~l~~~~~~V~~v~fspd~---~~Lavg~~d-----G~V~l~~~ 515 (1057)
-.+++++.||.+|||++-.+.-.-...+...+..+ ....+..+..||+|+|.- .+||+|+.+ +.++||..
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 37899999999999998665311111222211111 122455688999999642 378999876 68999998
Q ss_pred cCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC----CCEEEEEeCCceEEEEeCCCCe-----
Q 001538 516 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS----GAKLAVGFECGRVAVLDMNLLS----- 586 (1057)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~----g~~lA~G~~dG~V~vwDi~~~~----- 586 (1057)
..+.+. .+.+..+..|..+|+.|+|+|+ ...||+|+.|| |+||.++...
T Consensus 207 ~e~~rK---------------------w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ 264 (361)
T KOG2445|consen 207 NENGRK---------------------WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEE 264 (361)
T ss_pred cCCcce---------------------eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhh
Confidence 765432 1123456689999999999996 34799999999 9999997411
Q ss_pred -------E-----EEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 587 -------V-----LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 587 -------~-----l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
. +.....+++|...|..+.|+. .|.+|.+.+.||.|++|-
T Consensus 265 ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm----------------------tGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 265 EEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM----------------------TGTILSSTGDDGCVRLWK 316 (361)
T ss_pred hcccCCCCccccceEEeeeccCCCCceEEEEEee----------------------eeeEEeecCCCceeeehh
Confidence 1 222233467999999999983 377899999999999994
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.63 E-value=2.1e-14 Score=161.84 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=107.6
Q ss_pred cCCCCcEEEEEeC-CCcEEEEecCCCceeEEeeccc-ceeeeee-cCCCCCEEEEEEecCCCeEEEEecCccEEEEEecC
Q 001538 441 CHSVDRVYLAGYH-DGSVRIWDATYPVFKLICALDA-EVQGIEV-AGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 517 (1057)
Q Consensus 441 ~~~~~~~liTG~~-DGtVriWd~~~~~l~~l~~l~~-~v~~i~l-~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~ 517 (1057)
+..|...|||++. |+.||+||++.... .+.... .+..+.. ......++++..+..|.+|.+.+.|+.|++|++..
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~--~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYT--AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEeccceeeeccCCCcceEEEeeccccc--ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 3455567888777 99999999987541 111100 0000000 01134577788888889988888899999999976
Q ss_pred CCCccceeeeecCCCceEEeccCCcceeeEEEeeCC-CC-eEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCC
Q 001538 518 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN-SP-VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 595 (1057)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~-~~-ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~ 595 (1057)
..... ...+.++. .. -..=..||++.+|++|+.|+...+|.+..+.+--. .+-
T Consensus 303 ~s~sP-----------------------~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~--~l~ 357 (720)
T KOG0321|consen 303 LSISP-----------------------VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA--LLL 357 (720)
T ss_pred cCcCc-----------------------hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh--hhh
Confidence 54321 11122211 11 11234789999999999999999999987654222 234
Q ss_pred CCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCc
Q 001538 596 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 652 (1057)
Q Consensus 596 g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg 652 (1057)
||...|++++|.+... .. +++++.|.++++|++..|
T Consensus 358 Ght~eVt~V~w~pS~~--------------------t~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 358 GHTREVTTVRWLPSAT--------------------TP-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEEEeeccccC--------------------CC-ceeeccCcceEEEeccCc
Confidence 7999999999985432 33 556699999999998654
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.3e-13 Score=161.73 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=96.9
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeeccc--ceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDA--EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~--~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
+++.+++|++...||.|+|||++.+.+ ..++.. +..+.+. ...++.++|+|+++.|++...|+.|++|+...-
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~--~~tl~~v~k~n~~~~---s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGIL--SKTLTGVDKDNEFIL---SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchh--hhhcccCCccccccc---cceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 445566899999999999999998873 233332 2222222 346788999999999999999999999986543
Q ss_pred CCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCC
Q 001538 519 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 598 (1057)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~ 598 (1057)
.... . .....+...+++++|||+|+|||+++.||.|.|||+++-.. + ...
T Consensus 221 e~~f-------------~----------Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~---~~~ 270 (933)
T KOG1274|consen 221 ELQF-------------K----------LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----H---EFK 270 (933)
T ss_pred eehe-------------e----------ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----c---ccc
Confidence 2210 0 11223455699999999999999999999999999987221 1 245
Q ss_pred CCeEEEEEee
Q 001538 599 SPIISMTWTE 608 (1057)
Q Consensus 599 ~~V~sl~f~~ 608 (1057)
..|++++|.+
T Consensus 271 ~~Vc~~aw~p 280 (933)
T KOG1274|consen 271 RAVCCEAWKP 280 (933)
T ss_pred ceeEEEecCC
Confidence 6788999874
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.1e-16 Score=178.54 Aligned_cols=158 Identities=17% Similarity=0.260 Sum_probs=138.3
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
.++..+.+|++|..||+||+||+.... .+. .|-+|...+.+|+|+|-+.+.|.|+.|+.+.+||.+...
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk--~vr---------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAK--IVR---------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhh--hhh---------hhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 488899999999999999999997554 111 344788899999999999999999999999999987532
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCC
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 599 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~ 599 (1057)
|...+.+|...|.+|+|+|+|+++++|++|.+++|||...++++..+.. |..
T Consensus 146 -------------------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~---~e~ 197 (825)
T KOG0267|consen 146 -------------------------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS---HEG 197 (825)
T ss_pred -------------------------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc---ccc
Confidence 2346778999999999999999999999999999999999999877654 899
Q ss_pred CeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 600 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 600 ~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
.|.++.|+ |..-+|..|+.|++|++||++|-++|.+.
T Consensus 198 ~v~sle~h----------------------p~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 198 KVQSLEFH----------------------PLEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred cccccccC----------------------chhhhhccCCCCceeeeeccceeEEeecc
Confidence 99999998 66778999999999999999999999876
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.8e-14 Score=146.34 Aligned_cols=158 Identities=11% Similarity=0.201 Sum_probs=108.1
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
+.+.+++|+||..-|.+-++|+.+.+. +..++-. . ...|..|-|+..|+.|+.-+.|..||.|+++.--.
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~--vas~rit-----s---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLEC--VASFRIT-----S---VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchhee--eeeeeec-----h---heeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence 677888999999999999999987652 2222210 1 12788999999999999999999999999863111
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEe--eCCCCeEEEEEcCCCCEEEEEeC-CceEEEEeCCCCeEEEEeecCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFS--LVNSPVRALQFTSSGAKLAVGFE-CGRVAVLDMNLLSVLFFTDDISGS 597 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~--~h~~~ItsLa~S~~g~~lA~G~~-dG~V~vwDi~~~~~l~~~~~~~g~ 597 (1057)
.+. .+++. |...++ ..+.+=.+++||.+|.|+..|+. ...+.||.-..|.++.-++. .
T Consensus 231 ~~r-------~~e~e---------~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG---~ 291 (405)
T KOG1273|consen 231 EGR-------DGEVE---------PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG---T 291 (405)
T ss_pred cCc-------cCCcC---------hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC---C
Confidence 100 00000 000000 12344568899999999877764 34699999999998877654 3
Q ss_pred C-CCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 598 S-SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 598 ~-~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
. .....+.|+ |-...+++- ..|.|.+|...
T Consensus 292 kgE~l~DV~wh----------------------p~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 292 KGEELLDVNWH----------------------PVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred chhheeecccc----------------------cceeeeeec-cCCceEEEEee
Confidence 3 567778887 334445555 88999999644
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=1.2e-13 Score=142.62 Aligned_cols=329 Identities=16% Similarity=0.171 Sum_probs=189.2
Q ss_pred hhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCC
Q 001538 113 DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 192 (1057)
Q Consensus 113 ~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (1057)
++++....+.+.|.+.|.++...|. +|.++++|+.||.|.+||++...-...-.+ -.++..- -..
T Consensus 30 L~Ln~d~d~~r~HgGsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~l---i~k~~c~-----------v~~ 94 (397)
T KOG4283|consen 30 LQLNNDKDFVRPHGGSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGL---IAKHKCI-----------VAK 94 (397)
T ss_pred eeccCCcceeccCCCccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccc---eeheeee-----------ccc
Confidence 3333444455778899999999997 799999999999999999975431100000 0000000 000
Q ss_pred CCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCC
Q 001538 193 SEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESR 272 (1057)
Q Consensus 193 ~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~ 272 (1057)
.....+.-.|+++.|-+-|...+.+++-|.++++||.++..... ..++ ...|..-+|+.-
T Consensus 95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~---------~F~m-------e~~VYshamSp~---- 154 (397)
T KOG4283|consen 95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV---------DFKM-------EGKVYSHAMSPM---- 154 (397)
T ss_pred cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE---------Eeec-------CceeehhhcChh----
Confidence 00112367899999985677899999999999999998753110 0110 112333333321
Q ss_pred CCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEE
Q 001538 273 SNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHF 352 (1057)
Q Consensus 273 ~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~ 352 (1057)
.-...|+++| +.+-++.+
T Consensus 155 -a~sHcLiA~g-------------------------------------------------------------tr~~~VrL 172 (397)
T KOG4283|consen 155 -AMSHCLIAAG-------------------------------------------------------------TRDVQVRL 172 (397)
T ss_pred -hhcceEEEEe-------------------------------------------------------------cCCCcEEE
Confidence 0112222222 23335566
Q ss_pred eeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCC
Q 001538 353 YDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGV 432 (1057)
Q Consensus 353 ~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~ 432 (1057)
.|.++ ..+.-.+++|...|..+.+++
T Consensus 173 CDi~S----------------Gs~sH~LsGHr~~vlaV~Wsp-------------------------------------- 198 (397)
T KOG4283|consen 173 CDIAS----------------GSFSHTLSGHRDGVLAVEWSP-------------------------------------- 198 (397)
T ss_pred EeccC----------------CcceeeeccccCceEEEEecc--------------------------------------
Confidence 65221 122234555665554444321
Q ss_pred CCCCCccccCCCCcEEEEEeCCCcEEEEecCCC--ceeEEeeccc---ceeeeeecCCCCCEEEEEEecCCCeEEEEecC
Q 001538 433 PSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP--VFKLICALDA---EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 507 (1057)
Q Consensus 433 ~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~--~l~~l~~l~~---~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~d 507 (1057)
...-+|+||+.||.||+||++.- .+..+..-++ ++.+.+ ..|.+.|..++|+.|+.+|++.+.|
T Consensus 199 ----------~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n-~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 199 ----------SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTN-TAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred ----------CceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccc-ccccceeeeeeecccchhhhhccCc
Confidence 11237999999999999999754 2222221111 122212 2578899999999999999999999
Q ss_pred ccEEEEEecCCCCcc-ceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCe
Q 001538 508 GLVYIYNLNGSLDAK-NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS 586 (1057)
Q Consensus 508 G~V~l~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~ 586 (1057)
..+++|+....+..- ++..+.+ ++..+|. .| |.+. ..+-++..=+. |.+.|+.+-.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~--------n~~~~~~------~~---~~~~---~s~vfv~~p~~-~~lall~~~sgs 326 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIH--------NQTTSFA------VH---IQSM---DSDVFVLFPND-GSLALLNLLEGS 326 (397)
T ss_pred cceEEeecccCcccccccccccc--------cccccce------EE---Eeec---ccceEEEEecC-CeEEEEEccCce
Confidence 999999987765421 1100000 0011111 11 1111 12223333333 667888877777
Q ss_pred EEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 587 VLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 587 ~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
.+..... |-..|.+..|- |+=+.+++|..|+.|..|-.
T Consensus 327 ~ir~l~~---h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 327 FVRRLST---HLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEeeec---ccceeeEEeec----------------------CchhhhhccccCCccccccc
Confidence 6665543 65566666665 55667899999999999943
No 137
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.4e-14 Score=143.53 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=116.1
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecC---C-----------CeEEEEecC
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI---N-----------SSLAVGNEF 507 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd---~-----------~~Lavg~~d 507 (1057)
+.++-+|+.|+.||.|++.++..... . ...+ ....|..-|++|+|+|- | +.|++|+.|
T Consensus 113 heygl~LacasSDG~vsvl~~~~~g~---w-~t~k----i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD 184 (299)
T KOG1332|consen 113 HEYGLLLACASSDGKVSVLTYDSSGG---W-TTSK----IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD 184 (299)
T ss_pred cccceEEEEeeCCCcEEEEEEcCCCC---c-cchh----hhhccccccceeeecCcCCCccccccCcccccceeeccCCc
Confidence 44556899999999999988765420 0 0001 12257788999999997 3 459999999
Q ss_pred ccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC----CEEEEEeCCceEEEEeCC
Q 001538 508 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG----AKLAVGFECGRVAVLDMN 583 (1057)
Q Consensus 508 G~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g----~~lA~G~~dG~V~vwDi~ 583 (1057)
..|+||++........ ..|.+|..-|..+|++|.- .++|++++||+|.||-.+
T Consensus 185 n~VkiW~~~~~~w~~e-----------------------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 185 NLVKIWKFDSDSWKLE-----------------------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred cceeeeecCCcchhhh-----------------------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 9999999977543221 2477899999999999974 369999999999999875
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 584 LLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 584 ~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
.-.--+....+.....++.++.|+ +.|++|++++.|..|.+|-..
T Consensus 242 ~e~e~wk~tll~~f~~~~w~vSWS----------------------~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWRVSWS----------------------LSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CccCcccccccccCCcceEEEEEe----------------------ccccEEEEecCCcEEEEEEeC
Confidence 321112222233356789999999 779999999999999999654
No 138
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.62 E-value=6e-14 Score=153.55 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=115.2
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecCCCCcc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAK 522 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~~~~ 522 (1057)
...++++.+.|+.+.|||.+.....+.. ...+|...|.|++|.|-+. .||+|+.|++|.|||++.-..
T Consensus 239 h~~lF~sv~dd~~L~iwD~R~~~~~~~~---------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-- 307 (422)
T KOG0264|consen 239 HEDLFGSVGDDGKLMIWDTRSNTSKPSH---------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-- 307 (422)
T ss_pred chhhheeecCCCeEEEEEcCCCCCCCcc---------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--
Confidence 3457899999999999999864211111 2337889999999999655 689999999999999975322
Q ss_pred ceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC-CCEEEEEeCCceEEEEeCCC--------------CeE
Q 001538 523 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNL--------------LSV 587 (1057)
Q Consensus 523 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~-g~~lA~G~~dG~V~vwDi~~--------------~~~ 587 (1057)
|...+.+|...|.+|.|||. ...||+++.|++|.|||+.. +.+
T Consensus 308 ----------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 308 ----------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred ----------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcce
Confidence 23478899999999999995 45799999999999999942 122
Q ss_pred EEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCC-cEEEEEecCCeEEEEeCC
Q 001538 588 LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE-EVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 588 l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~-~~L~sgt~dg~i~v~d~~ 650 (1057)
+| .+. ||...|..+.|+ |.. -+|++.+.|+.+.||...
T Consensus 366 lF-~Hg--GH~~kV~DfsWn----------------------p~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 366 LF-IHG--GHTAKVSDFSWN----------------------PNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eE-Eec--CcccccccccCC----------------------CCCCeEEEEecCCceEEEeecc
Confidence 33 333 799999999998 333 357889999999999654
No 139
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.61 E-value=3.7e-14 Score=155.14 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=86.5
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecCCCCccce
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
.+|+||+.|++|++||++.... .++++ .+|...|.+|.|+|... .||+++.|+.|.|||+..-.....-
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL~~-~lh~~---------e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNLNK-PLHTF---------EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred ceEEeccCCCcEEEeechhccc-Cceec---------cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 4899999999999999987653 33333 48889999999999765 7899999999999999753221100
Q ss_pred eeeecCCCceEEeccCCc-ceeeEEEeeCCCCeEEEEEcCCCCE-EEEEeCCceEEEEeCC
Q 001538 525 LFVLETKSEVHALPEGKI-SLCRAVFSLVNSPVRALQFTSSGAK-LAVGFECGRVAVLDMN 583 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g-~~~~~~~~~h~~~ItsLa~S~~g~~-lA~G~~dG~V~vwDi~ 583 (1057)
-...+| ...+....+|...|+...|+|+..+ +++..+|+.+.||...
T Consensus 356 ------------eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 356 ------------EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ------------hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 000111 1122345579999999999998776 7889999999999875
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3e-13 Score=140.99 Aligned_cols=295 Identities=13% Similarity=0.160 Sum_probs=177.6
Q ss_pred CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE
Q 001538 68 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 147 (1057)
Q Consensus 68 ~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~ 147 (1057)
.-|+++.+++.|+.|++++.|++|.||+.+.+.++ +.+...| +.|.+.|+.|.|.|-..|..|++.+
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~-----W~~Ts~W--------rah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT-----WSCTSSW--------RAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCCCCc-----eEEeeeE--------EecCCcEEEEEecCccccceEEEEe
Confidence 45899999999999999999999999997665543 3333222 3467889999995555899999999
Q ss_pred CCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCC--CCEEEEEEcCCcEE
Q 001538 148 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGYIDGDIL 225 (1057)
Q Consensus 148 ~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pd--G~~latg~~DG~I~ 225 (1057)
.|+++.||.-........ ..+... ...-......|+.++|. |. |..+|+.+.||.|+
T Consensus 81 ~Drtv~iWEE~~~~~~~~----~~~Wv~----------------~ttl~DsrssV~DV~Fa-P~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAH----GRRWVR----------------RTTLVDSRSSVTDVKFA-PKHLGLKLAAASADGILR 139 (361)
T ss_pred cCCceeeeeecccccccc----cceeEE----------------EEEeecCCcceeEEEec-chhcceEEEEeccCcEEE
Confidence 999999997532211110 000000 00001126789999998 65 88999999999999
Q ss_pred EEeCCCCCccCC-CCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCccccc
Q 001538 226 LWNTSTTASTKG-QQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 304 (1057)
Q Consensus 226 lWd~~~~~~~~~-~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~ 304 (1057)
|+++.+.....+ .... .+..+.-..+.+..+..++.|+... ....+++.|.++. .++.
T Consensus 140 IYEA~dp~nLs~W~Lq~---Ei~~~~~pp~~~~~~~~CvsWn~sr-----~~~p~iAvgs~e~-a~~~------------ 198 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQH---EIQNVIDPPGKNKQPCFCVSWNPSR-----MHEPLIAVGSDED-APHL------------ 198 (361)
T ss_pred EEecCCccccccchhhh---hhhhccCCcccccCcceEEeecccc-----ccCceEEEEcccC-Cccc------------
Confidence 999987632111 0000 0000000112245567788887522 2344555555441 1100
Q ss_pred ccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCC
Q 001538 305 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 384 (1057)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 384 (1057)
++.++|. . .++...+ .....++.|.
T Consensus 199 -------------------------------------------~~~~Iye-------~--~e~~rKw---~kva~L~d~~ 223 (361)
T KOG2445|consen 199 -------------------------------------------NKVKIYE-------Y--NENGRKW---LKVAELPDHT 223 (361)
T ss_pred -------------------------------------------cceEEEE-------e--cCCccee---eeehhcCCCC
Confidence 1222221 0 0000000 0112234566
Q ss_pred CcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCC
Q 001538 385 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 464 (1057)
Q Consensus 385 ~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~ 464 (1057)
.+|+.+++.+.- ++ .-.+|++++.|| ||||.+..
T Consensus 224 dpI~di~wAPn~-------------------Gr--------------------------~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 224 DPIRDISWAPNI-------------------GR--------------------------SYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred Ccceeeeecccc-------------------CC--------------------------ceeeEEEeecCc-EEEEEEee
Confidence 677777664321 11 113799999999 99999874
Q ss_pred Cc--------eeEEeecccceeee-eecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 465 PV--------FKLICALDAEVQGI-EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 465 ~~--------l~~l~~l~~~v~~i-~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
.. +.+....+-++.-+ .+++|+..|..+.|.-.|..|++.+.||.||+|+..-+
T Consensus 258 ~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 258 ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 21 00000000022222 26799999999999999999999999999999986543
No 141
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=8.6e-14 Score=140.70 Aligned_cols=256 Identities=18% Similarity=0.265 Sum_probs=165.4
Q ss_pred CCCeEEEEECCCEEEEEEccCCe---EEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecC-CCCE
Q 001538 139 SGNRVLIAYENALVILWDVSEAQ---IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSI 214 (1057)
Q Consensus 139 ~g~~lli~~~dG~I~lWdl~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~p-dG~~ 214 (1057)
.|+||++++.|++|+|+.++.+. ++..+.+ | .++|+.+.|..| -|..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G---------h--------------------~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG---------H--------------------SGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecC---------C--------------------CCCeeEEeecccccCcE
Confidence 68899999999999999997653 3444444 3 899999999623 6999
Q ss_pred EEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEE
Q 001538 215 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 294 (1057)
Q Consensus 215 latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~lt 294 (1057)
||+.+-||.|.+|.-..+.-. +. .....|...|.++.|... +.+-+|.++.+| ..+.
T Consensus 73 LAScsYDgkVIiWke~~g~w~------------k~-~e~~~h~~SVNsV~waph------eygl~LacasSD----G~vs 129 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWT------------KA-YEHAAHSASVNSVAWAPH------EYGLLLACASSD----GKVS 129 (299)
T ss_pred eeEeecCceEEEEecCCCchh------------hh-hhhhhhcccceeeccccc------ccceEEEEeeCC----CcEE
Confidence 999999999999998766311 00 012235566788877642 366666666665 2344
Q ss_pred EEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCc
Q 001538 295 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPV 374 (1057)
Q Consensus 295 vl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~ 374 (1057)
|+.++-+ | .|+. .
T Consensus 130 vl~~~~~----------------------------------------------g---~w~t------------------~ 142 (299)
T KOG1332|consen 130 VLTYDSS----------------------------------------------G---GWTT------------------S 142 (299)
T ss_pred EEEEcCC----------------------------------------------C---Cccc------------------h
Confidence 4332200 0 0110 0
Q ss_pred ccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCC
Q 001538 375 EFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD 454 (1057)
Q Consensus 375 ~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~D 454 (1057)
.. ...|...++.+...+..-+ +. +-+.- ....-+.+++|+.|
T Consensus 143 ki---~~aH~~GvnsVswapa~~~-----------------g~----------~~~~~--------~~~~~krlvSgGcD 184 (299)
T KOG1332|consen 143 KI---VFAHEIGVNSVSWAPASAP-----------------GS----------LVDQG--------PAAKVKRLVSGGCD 184 (299)
T ss_pred hh---hhccccccceeeecCcCCC-----------------cc----------ccccC--------cccccceeeccCCc
Confidence 00 0113334444433221100 00 00000 00112468999999
Q ss_pred CcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC----eEEEEecCccEEEEEecCCCCccceeeeecC
Q 001538 455 GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS----SLAVGNEFGLVYIYNLNGSLDAKNFLFVLET 530 (1057)
Q Consensus 455 GtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~----~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~ 530 (1057)
..|+||+...... .+. -.|.+|..-|..++|+|.-. ++|++++||+|.||..+.....-.
T Consensus 185 n~VkiW~~~~~~w----~~e-----~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk------- 248 (299)
T KOG1332|consen 185 NLVKIWKFDSDSW----KLE-----RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK------- 248 (299)
T ss_pred cceeeeecCCcch----hhh-----hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc-------
Confidence 9999999887642 121 12558889999999999764 799999999999998863311100
Q ss_pred CCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeC
Q 001538 531 KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 582 (1057)
Q Consensus 531 ~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi 582 (1057)
..++...+..+..++||..|.+||+++.|..|.+|--
T Consensus 249 ---------------~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 249 ---------------KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ---------------ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 1234445678999999999999999999999999964
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.6e-13 Score=153.62 Aligned_cols=149 Identities=18% Similarity=0.241 Sum_probs=111.1
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
|++....++.+.+ ..|||||+...++ ...+. ....-|..++.+|.|--|++|+.|+.+..||+.-+..
T Consensus 574 FHPs~p~lfVaTq-~~vRiYdL~kqel--vKkL~---------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 574 FHPSKPYLFVATQ-RSVRIYDLSKQEL--VKKLL---------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred ecCCCceEEEEec-cceEEEehhHHHH--HHHHh---------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc
Confidence 5555555554443 5899999987663 11121 1123688999999999999999999999999875422
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEe------CCCCeEEEEeecC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD------MNLLSVLFFTDDI 594 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwD------i~~~~~l~~~~~~ 594 (1057)
|...+..|...|++++|++...++|+|+.||++.|+. +...-++.-...+
T Consensus 642 ------------------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 642 ------------------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred ------------------------hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 1235667999999999999999999999999999985 3222233334444
Q ss_pred CCCCCC----eEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEE
Q 001538 595 SGSSSP----IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 647 (1057)
Q Consensus 595 ~g~~~~----V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~ 647 (1057)
.||..- |....|+ |-..+|++++.||+|++|
T Consensus 698 ~gH~~~~~~gVLd~~wH----------------------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWH----------------------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCceeecccceEeeccc----------------------CCCceEEecCCCceEEee
Confidence 566654 8888898 667899999999999998
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.3e-13 Score=158.27 Aligned_cols=172 Identities=21% Similarity=0.258 Sum_probs=131.0
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
+..+|+.++.|+.|-.|++-+...... . ..+.+|..+|.+|.|+|.+.+||+.+.||.|++|++.....
T Consensus 104 v~g~g~~iaagsdD~~vK~~~~~D~s~--~---------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDDTAVKLLNLDDSSQ--E---------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred EecCCcEEEeecCceeEEEEeccccch--h---------eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence 566777899999999999988776542 1 12448899999999999999999999999999999986543
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP 600 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~ 600 (1057)
... +..+....++. ....++.++|+|+|..||+-..|+.|++++..+....+.+.. ..+++.
T Consensus 173 ~~t----------l~~v~k~n~~~-------~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-~~~ss~ 234 (933)
T KOG1274|consen 173 SKT----------LTGVDKDNEFI-------LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-KLSSSK 234 (933)
T ss_pred hhh----------cccCCcccccc-------ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-cccccc
Confidence 211 01111111110 155678899999988999999999999999999998887754 225555
Q ss_pred eEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC------cceeecCccccC
Q 001538 601 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS------ENMISSSPWHLK 663 (1057)
Q Consensus 601 V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t------g~~i~~~~i~p~ 663 (1057)
++.++|+ |.|.||++++.||.|.|||.+| +..|+-..+.|.
T Consensus 235 ~~~~~ws----------------------PnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 235 FSDLQWS----------------------PNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPN 281 (933)
T ss_pred eEEEEEc----------------------CCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCC
Confidence 9999998 8899999999999999999994 444543334444
No 144
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=5.9e-13 Score=157.21 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=111.4
Q ss_pred CCcEEEEEeCCCcEEEEecCCCcee-EEeecccceeeeeecCCCCC--EEEEEEecCCC-eEEEEecCccEEEEEecCCC
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFK-LICALDAEVQGIEVAGSRAP--VSTLSFCFINS-SLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~-~l~~l~~~v~~i~l~~~~~~--V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~ 519 (1057)
.+++++.|..||+||+||.+..... ++.+.+ .|+.. |..+.+.+.|- .|++|+.+|.|.+||++.+.
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR---------EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeec---------ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 3679999999999999999876531 122222 34445 99999998665 59999999999999998753
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCC--C-CeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeE---EEEeec
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN--S-PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV---LFFTDD 593 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~--~-~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~---l~~~~~ 593 (1057)
...- .....|- + .+|+|..++....+|+|+. +.|+|||+.+..+ .++...
T Consensus 1291 ~e~~-----------------------~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1291 KETF-----------------------LTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF 1346 (1387)
T ss_pred cccc-----------------------ceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc
Confidence 2211 0122232 3 5999999999999999999 8899999976433 222222
Q ss_pred CCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 594 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 594 ~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
..-...+++||+|+ |-.-+|++|..|.+|.||..+.
T Consensus 1347 ~~q~~gs~scL~FH----------------------P~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFH----------------------PHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ccCcCCCcceeeec----------------------chhHhhhhccCCceEEEeecCC
Confidence 12244578999999 5566799999999999996554
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6e-13 Score=149.08 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=85.2
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
+.++.|.-|+.|+.|+.+.++|+.-.. ++..+ +.-|..+|++|+|++--.++|+|+.||+|.||--....
T Consensus 614 sihp~GDnli~gs~d~k~~WfDldlss-kPyk~---------lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 614 SIHPNGDNLILGSYDKKMCWFDLDLSS-KPYKT---------LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred eecCCCCeEEEecCCCeeEEEEcccCc-chhHH---------hhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 467777789999999999999987542 11111 22466799999999999999999999999998532211
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCCCC----eEEEEEcCCCCEEEEEeCCceEEEE
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP----VRALQFTSSGAKLAVGFECGRVAVL 580 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~----ItsLa~S~~g~~lA~G~~dG~V~vw 580 (1057)
. +-+..-..|+..+.+|... |....|+|.-.+|.+++.||+|+||
T Consensus 684 D----------------l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 D----------------LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred h----------------hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 1111112344567777655 8889999999999999999999998
No 146
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.56 E-value=1.9e-13 Score=149.72 Aligned_cols=164 Identities=14% Similarity=0.231 Sum_probs=129.6
Q ss_pred EcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCC---Cceeeee---cCCCCEEEEEEecCCcEEEEEccCCcEEEEE
Q 001538 22 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES---RSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIK 95 (1057)
Q Consensus 22 ~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s---~~~l~tl---~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~ 95 (1057)
++.++.-|.++..+...+++.++ ..|.|+|||+.. +..+..+ .-+.-|.++-..|+++.|++|.+-.++.||+
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 34456668888888888788876 588999999965 3334333 3457899999999999999999999999998
Q ss_pred EeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccC
Q 001538 96 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 175 (1057)
Q Consensus 96 ~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~ 175 (1057)
+....-+ |.. +. ........+++.+| |.+..+..+.||.|+||||....+++.|.+
T Consensus 494 LAapTpr-------ika----el----tssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~VrqfqG------- 549 (705)
T KOG0639|consen 494 LAAPTPR-------IKA----EL----TSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQFQG------- 549 (705)
T ss_pred ccCCCcc-------hhh----hc----CCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeecccC-------
Confidence 7654322 211 00 01123467889999 688888999999999999999999998887
Q ss_pred CccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 176 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 176 ~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
| ...+.|+..+ +||..|-||+-|++|+-||+..+.
T Consensus 550 --h--------------------tDGascIdis-~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 550 --H--------------------TDGASCIDIS-KDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred --C--------------------CCCceeEEec-CCCceeecCCCccceeehhhhhhh
Confidence 3 7788999999 999999999999999999998874
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=147.27 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=120.3
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecC-CCeEEEEecCccEEEEEecCCCCcccee
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd-~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
.++||-.-+.|++|....+.. ++.+..+.+|+.+|..++|+|. ...||+++.||+|+|||++..+....
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W--------~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~-- 295 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSW--------KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA-- 295 (440)
T ss_pred ccccCccccceEeeeeccCce--------eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce--
Confidence 367777778899999888762 2333455689999999999995 45889999999999999987643211
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCC---eEEEEeecCCCCCCCeE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL---SVLFFTDDISGSSSPII 602 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~---~~l~~~~~~~g~~~~V~ 602 (1057)
....+|.+.|+.|.|+....+||+|++||+++|||+++- +.+..+.. |..||+
T Consensus 296 ---------------------~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~---Hk~pIt 351 (440)
T KOG0302|consen 296 ---------------------VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY---HKAPIT 351 (440)
T ss_pred ---------------------eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe---ccCCee
Confidence 234789999999999999889999999999999999753 44555554 999999
Q ss_pred EEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 603 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 603 sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
||.|++ .+...|++++.|.+|.+||+..
T Consensus 352 sieW~p---------------------~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 352 SIEWHP---------------------HEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEEecc---------------------ccCceEEeccCCCcEEEEEeec
Confidence 999994 3355788999999999999753
No 148
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.5e-13 Score=140.34 Aligned_cols=154 Identities=26% Similarity=0.302 Sum_probs=119.5
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeeccc--ceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccce
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDA--EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~--~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
+++.|+++|.|-+||++.+.. +..++. ++ .-....|..+|.++.|++....=++|+.+-.+..|.+........
T Consensus 167 lllaGyEsghvv~wd~S~~~~--~~~~~~~~kv-~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq- 242 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDK--IIQLPQSSKV-ESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ- 242 (323)
T ss_pred EEEEeccCCeEEEEEccCCce--eecccccccc-ccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc-
Confidence 789999999999999998741 111221 11 112346778999999998887888999999999999876432111
Q ss_pred eeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEE
Q 001538 525 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl 604 (1057)
....+...+-.|..+.+-||++.+|+++.||+++||..++...+..+.. |+..|.++
T Consensus 243 --------------------~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky---Hsagvn~v 299 (323)
T KOG0322|consen 243 --------------------IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY---HSAGVNAV 299 (323)
T ss_pred --------------------ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh---hhcceeEE
Confidence 0012223345678889999999999999999999999999888766655 99999999
Q ss_pred EEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 605 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 605 ~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
+|+ |+..+|+++++|++|-+|++
T Consensus 300 Afs----------------------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFS----------------------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeC----------------------CCCchhhhccCCceEEeeec
Confidence 999 88899999999999999974
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.54 E-value=6.6e-12 Score=141.57 Aligned_cols=172 Identities=17% Similarity=0.264 Sum_probs=126.5
Q ss_pred CeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceecc
Q 001538 28 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 106 (1057)
Q Consensus 28 ~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~ 106 (1057)
-|..++|-|||.-|+.+ +++.+.|+|...|.++.+++.+ ..|.|++++.+|+.+++|..|..|-||.--. +|.|.
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-- 89 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee--
Confidence 58899999999877765 6889999999999999999854 7899999999999999999999887876322 23332
Q ss_pred CcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCC
Q 001538 107 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 186 (1057)
Q Consensus 107 ~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 186 (1057)
| +|...|-|+.|+| ...+|+ .+.=...-+|+.....+.....
T Consensus 90 -Y---------------SH~D~IQCMsFNP--~~h~La-sCsLsdFglWS~~qK~V~K~ks------------------- 131 (1081)
T KOG1538|consen 90 -Y---------------SHNDAIQCMSFNP--ITHQLA-SCSLSDFGLWSPEQKSVSKHKS------------------- 131 (1081)
T ss_pred -e---------------ccCCeeeEeecCc--hHHHhh-hcchhhccccChhhhhHHhhhh-------------------
Confidence 2 3567899999999 454444 4444455589876655432211
Q ss_pred CcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEee
Q 001538 187 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWS 266 (1057)
Q Consensus 187 ~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~ 266 (1057)
...|.+.+|. .||.+++.|+.||+|.+-+..... -.+++- ++....||-.+.|+
T Consensus 132 ------------s~R~~~CsWt-nDGqylalG~~nGTIsiRNk~gEe------------k~~I~R-pgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 132 ------------SSRIICCSWT-NDGQYLALGMFNGTISIRNKNGEE------------KVKIER-PGGSNSPIWSICWN 185 (1081)
T ss_pred ------------heeEEEeeec-CCCcEEEEeccCceEEeecCCCCc------------ceEEeC-CCCCCCCceEEEec
Confidence 4678899999 999999999999999998654322 112221 22345678888887
Q ss_pred c
Q 001538 267 T 267 (1057)
Q Consensus 267 ~ 267 (1057)
.
T Consensus 186 p 186 (1081)
T KOG1538|consen 186 P 186 (1081)
T ss_pred C
Confidence 5
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.53 E-value=1.2e-12 Score=137.61 Aligned_cols=163 Identities=17% Similarity=0.235 Sum_probs=124.4
Q ss_pred CCCCeeEEEEEc----CCcEEEEEeCCCcEEEEECCC-C--ceeeeecC---CCCEEEEEEecC----CcEEEEEccCCc
Q 001538 25 SQLPYKNLEFLQ----NQGFLISITNDNEIQVWSLES-R--SLACCLKW---ESNITAFSVISG----SHFMYIGDENGL 90 (1057)
Q Consensus 25 ~~~~v~~L~F~~----~~~~Lvs~s~d~~I~VWdl~s-~--~~l~tl~~---~~~Ita~~~sp~----~~~l~vG~~~G~ 90 (1057)
+..+|-.++|.+ +...+++....+++.+++... + +++.++.. ++....++++.+ ..++++|..-|.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv 116 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV 116 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence 346788888873 444466666788999999754 3 45666642 345555666654 348999999998
Q ss_pred EEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCc
Q 001538 91 MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKD 170 (1057)
Q Consensus 91 v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~ 170 (1057)
|+|+++.. +++. +.-.+|...|..|.++|+ ..++|++++.|-.|+||++++..++.+|++-
T Consensus 117 IrVid~~~--~~~~---------------~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~- 177 (385)
T KOG1034|consen 117 IRVIDVVS--GQCS---------------KNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGGV- 177 (385)
T ss_pred EEEEecch--hhhc---------------cceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEeccc-
Confidence 88876543 3333 122456788999999997 5778999999999999999999999999871
Q ss_pred ccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 171 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
+.|...|.++.|+ ++|.+|++++.|.+|++|+++..
T Consensus 178 -------------------------egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 178 -------------------------EGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred -------------------------ccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChh
Confidence 1237899999999 99999999999999999999753
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=4.9e-13 Score=145.67 Aligned_cols=302 Identities=14% Similarity=0.198 Sum_probs=186.7
Q ss_pred eEEEEEcCCcEEEEEeCC---CcEEEEECCCCc--e--eeeecCCCCEEEEEEec-------CCcEEEEEccCCcEEEEE
Q 001538 30 KNLEFLQNQGFLISITND---NEIQVWSLESRS--L--ACCLKWESNITAFSVIS-------GSHFMYIGDENGLMSVIK 95 (1057)
Q Consensus 30 ~~L~F~~~~~~Lvs~s~d---~~I~VWdl~s~~--~--l~tl~~~~~Ita~~~sp-------~~~~l~vG~~~G~v~v~~ 95 (1057)
..+..-|....++++-.+ ..++||=..... + -|-+-.+..--|+++.- .++|+++|+.+-.|.||+
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 456666755455554433 345555443333 1 11112233323444332 367999999999999999
Q ss_pred EeCCCCceeccCcccch---hhhhhh---cCC-CCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecC
Q 001538 96 YDADEGKLFQLPYNISA---DALSEK---AGF-PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 168 (1057)
Q Consensus 96 ~d~~~~~l~~~~~~i~~---~~~~~~---~g~-~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~ 168 (1057)
+|.-+--+ |..+-. .++.+. .+. ...|...|.+++|+-. ..+.|++|+.|.+|+|||+.++++..++.+
T Consensus 209 LDI~d~v~---P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 209 LDIVDAVL---PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred cccccccc---cceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 98754211 221110 000000 111 1357788999999875 466799999999999999999999988876
Q ss_pred CcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCccee
Q 001538 169 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVK 248 (1057)
Q Consensus 169 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~k 248 (1057)
| .++|.++.||+-.+.+|++|+.|+++.+.|.+... +.. .
T Consensus 285 ---------~--------------------~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~---------~s~-~- 324 (463)
T KOG0270|consen 285 ---------H--------------------GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS---------NSG-K- 324 (463)
T ss_pred ---------c--------------------CCceeEEEecCCCceEEEeccccceEEeeeccCcc---------ccC-c-
Confidence 3 78999999995567899999999999999996421 000 0
Q ss_pred eecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEee
Q 001538 249 LELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLS 328 (1057)
Q Consensus 249 l~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p 328 (1057)
.|.. ...|-.+.| +.
T Consensus 325 -~wk~---~g~VEkv~w-----------------------------------~~-------------------------- 339 (463)
T KOG0270|consen 325 -EWKF---DGEVEKVAW-----------------------------------DP-------------------------- 339 (463)
T ss_pred -eEEe---ccceEEEEe-----------------------------------cC--------------------------
Confidence 0000 011222222 11
Q ss_pred cCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHH
Q 001538 329 SAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEI 408 (1057)
Q Consensus 329 ~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~ 408 (1057)
+.+..+++.+++|.|+-+| +..+ ....+++..|+.+|+++.+..
T Consensus 340 -------~se~~f~~~tddG~v~~~D-------~R~~--------~~~vwt~~AHd~~ISgl~~n~-------------- 383 (463)
T KOG0270|consen 340 -------HSENSFFVSTDDGTVYYFD-------IRNP--------GKPVWTLKAHDDEISGLSVNI-------------- 383 (463)
T ss_pred -------CCceeEEEecCCceEEeee-------cCCC--------CCceeEEEeccCCcceEEecC--------------
Confidence 1223566778899999998 3222 122344555777776665521
Q ss_pred HhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCC
Q 001538 409 ATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP 488 (1057)
Q Consensus 409 ~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~ 488 (1057)
....+++|++.|++|++|++..-...... .+ .+++. .
T Consensus 384 ----------------------------------~~p~~l~t~s~d~~Vklw~~~~~~~~~v~---~~--~~~~~----r 420 (463)
T KOG0270|consen 384 ----------------------------------QTPGLLSTASTDKVVKLWKFDVDSPKSVK---EH--SFKLG----R 420 (463)
T ss_pred ----------------------------------CCCcceeeccccceEEEEeecCCCCcccc---cc--ccccc----c
Confidence 12237899999999999998654421111 01 12222 4
Q ss_pred EEEEEEecCCC-eEEEEecCccEEEEEecCCC
Q 001538 489 VSTLSFCFINS-SLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 489 V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~ 519 (1057)
..|.+++|+-. .||+|+..+.++|||+..+.
T Consensus 421 l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 77888888776 67889999999999987654
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.52 E-value=2e-12 Score=141.31 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=100.5
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
.+++|++.|++++|||++.-.-+.- + -+..-.|..+|.+..|+|.+..|++-+.|.+|+|||-.--.....
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~s-----p--~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~-- 406 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKAS-----P--FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE-- 406 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCC-----c--ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC--
Confidence 4799999999999999875321110 0 011225788999999999999999999999999999741000000
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEE-
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM- 604 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl- 604 (1057)
-+..|.... ....|-.++ .-+|.|+..++++|-.-..|-|+|-.+++.+..++. .....|.++
T Consensus 407 -------p~~~I~Hn~------~t~RwlT~f-KA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~--P~~~tI~~vn 470 (498)
T KOG4328|consen 407 -------PLGTIPHNN------RTGRWLTPF-KAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD--PESSTIPSVN 470 (498)
T ss_pred -------ccceeeccC------cccccccch-hheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC--ccccccccce
Confidence 001111000 000122222 346999999999999988999999999987766543 122345554
Q ss_pred EEeeccCcccccCCCCCCCCcCCCCCCCc-EEEEEecCCeEEEEeCC
Q 001538 605 TWTEFKNTHSLAKNPNHSEREVPVNPAEE-VIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 605 ~f~~~~~~~~~~~~~~~~~~~~~~~~d~~-~L~sgt~dg~i~v~d~~ 650 (1057)
.|+ |-+. +++-++..|.|.||--+
T Consensus 471 ~~H----------------------P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 471 EFH----------------------PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eec----------------------ccccceeccCCccceEEEEecC
Confidence 455 3344 44445677888888543
No 153
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.50 E-value=4e-13 Score=137.25 Aligned_cols=305 Identities=17% Similarity=0.259 Sum_probs=178.6
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-C-CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCC
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-W-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 101 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~-~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~ 101 (1057)
|+...|.++.|-.++ ||.++...|.|++|++.+.+.+..+. + ...|+.+...|+ +.+.+-..|+.+.+|.++-..
T Consensus 12 p~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~- 88 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA- 88 (323)
T ss_pred cccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc-
Confidence 677789999998888 79999999999999999999887776 2 357899988887 666777788877777765421
Q ss_pred ceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC-EEEEEEccCCeEEEEecC-CcccccCCccC
Q 001538 102 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGG-KDLQLKDGVVD 179 (1057)
Q Consensus 102 ~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG-~I~lWdl~~~~~~~~~~~-~~~~~~~~~~~ 179 (1057)
.. .| |.-.+.++.|.+.. ++...... ....|+-+.-...+.... +..|. .+.
T Consensus 89 -~i----~i--------------~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv--~i~- 142 (323)
T KOG0322|consen 89 -FI----SI--------------HSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQV--QIA- 142 (323)
T ss_pred -eE----EE--------------eeeeccccccccce----eccCCCcchhheecCCcccchhhhhccCcccee--Ecc-
Confidence 11 00 01122333333310 11110000 000111111001111100 00000 000
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCC--EEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCC
Q 001538 180 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGS--ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 257 (1057)
Q Consensus 180 ~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~--~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~ 257 (1057)
.+....+.+.|+|..|.-.+++ .++.||++|.+.+||+++++..++.+ ...++...+.++.
T Consensus 143 ------------dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-----~~~kv~~~~ash~ 205 (323)
T KOG0322|consen 143 ------------DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-----QSSKVESPNASHK 205 (323)
T ss_pred ------------CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc-----cccccccchhhcc
Confidence 0011123677888887424454 57889999999999999985444333 2334445666778
Q ss_pred ccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCC
Q 001538 258 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH 337 (1057)
Q Consensus 258 ~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~ 337 (1057)
.||..+.+... .++. +.||.+ ..++++.++|+..
T Consensus 206 qpvlsldyas~------~~rG--isgga~----dkl~~~Sl~~s~g---------------------------------- 239 (323)
T KOG0322|consen 206 QPVLSLDYASS------CDRG--ISGGAD----DKLVMYSLNHSTG---------------------------------- 239 (323)
T ss_pred Ccceeeeechh------hcCC--cCCCcc----ccceeeeeccccC----------------------------------
Confidence 88888744321 0111 122222 3344444444320
Q ss_pred ceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCC
Q 001538 338 KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS 417 (1057)
Q Consensus 338 ~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (1057)
++ +.+..+...+|
T Consensus 240 -----------sl------------------------q~~~e~~lknp-------------------------------- 252 (323)
T KOG0322|consen 240 -----------SL------------------------QIRKEITLKNP-------------------------------- 252 (323)
T ss_pred -----------cc------------------------cccceEEecCC--------------------------------
Confidence 00 00000000000
Q ss_pred CCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecC
Q 001538 418 HTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI 497 (1057)
Q Consensus 418 ~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd 497 (1057)
|+... ...+|+++++|++.||.||+|...+.. ++.+++ -|...|.+++|+|+
T Consensus 253 -------------Gv~gv----rIRpD~KIlATAGWD~RiRVyswrtl~--pLAVLk---------yHsagvn~vAfspd 304 (323)
T KOG0322|consen 253 -------------GVSGV----RIRPDGKILATAGWDHRIRVYSWRTLN--PLAVLK---------YHSAGVNAVAFSPD 304 (323)
T ss_pred -------------Cccce----EEccCCcEEeecccCCcEEEEEeccCC--chhhhh---------hhhcceeEEEeCCC
Confidence 11111 367889999999999999999988765 566665 57789999999999
Q ss_pred CCeEEEEecCccEEEEEe
Q 001538 498 NSSLAVGNEFGLVYIYNL 515 (1057)
Q Consensus 498 ~~~Lavg~~dG~V~l~~~ 515 (1057)
...+|.|+.|++|-+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 999999999999999986
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=7.7e-14 Score=160.55 Aligned_cols=151 Identities=17% Similarity=0.310 Sum_probs=122.2
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCc-eeEEeecccceeeeeecCCCCCEEEEEEecCC-CeEEEEecCccEEEEEecCCCC
Q 001538 443 SVDRVYLAGYHDGSVRIWDATYPV-FKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~~~-l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~-~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
-+.++|+|++.+|.|-+||+.... -.++..+ ..|...|+++.|++-. .+|++|++||.|++||++....
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f---------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVF---------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHh---------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 356789999999999999998732 1122222 3677899999998754 5789999999999999987655
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcC-CCCEEEEEeCCceEEEEeCCCCeE-EEEeecCCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSV-LFFTDDISGSS 598 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~-~g~~lA~G~~dG~V~vwDi~~~~~-l~~~~~~~g~~ 598 (1057)
. .++.+....|..++|+| .+..+|+++++|.|.+||++.+.. .+.+. .|.
T Consensus 169 ~-------------------------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~---AH~ 220 (839)
T KOG0269|consen 169 K-------------------------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT---AHN 220 (839)
T ss_pred c-------------------------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh---ccc
Confidence 3 14445777899999999 467899999999999999998754 33332 499
Q ss_pred CCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCc
Q 001538 599 SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 652 (1057)
Q Consensus 599 ~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg 652 (1057)
++|.++.|+ |++.+|++|+.|+.|+|||..++
T Consensus 221 GpV~c~nwh----------------------Pnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 221 GPVLCLNWH----------------------PNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred CceEEEeec----------------------CCCceeeecCCCccEEEEeccCC
Confidence 999999999 88999999999999999998754
No 155
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.3e-12 Score=141.40 Aligned_cols=218 Identities=19% Similarity=0.237 Sum_probs=159.7
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEEEEEccCCcEEEEEEeC----CC
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDA----DE 100 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~----~~ 100 (1057)
..+|.+|+-+|.|-||++++-.+.|.+|.+.+|.++..+..+ ..|||+.|+-++.++++|+.||.|.+|.+-. ++
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 367999999999988888889999999999999999888544 6899999999999999999999999998521 11
Q ss_pred CceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCC
Q 001538 101 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 180 (1057)
Q Consensus 101 ~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (1057)
.. ...|+++- ..|.-+|+.+...+.-...+|++++.|.++++||+..|.++..+..
T Consensus 161 ~~-~~~p~~~f-----------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f------------ 216 (476)
T KOG0646|consen 161 DH-SVKPLHIF-----------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF------------ 216 (476)
T ss_pred CC-Cccceeee-----------ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec------------
Confidence 11 10122211 2456789888877642345799999999999999999999887765
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCcc---CCCCCCCCCcceeeecccccCC
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAST---KGQQTGSRNNVVKLELSSAERR 257 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~---~~~~~~~~~~i~kl~l~~~~~~ 257 (1057)
...+.+++.. |-++++.+|.++|.|.+-++...... +.+.+..........+.....+
T Consensus 217 ------------------p~si~av~lD-pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~ 277 (476)
T KOG0646|consen 217 ------------------PSSIKAVALD-PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE 277 (476)
T ss_pred ------------------CCcceeEEEc-ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence 5678999999 99999999999999999887654311 1111111111111112222233
Q ss_pred ccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001538 258 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSL 298 (1057)
Q Consensus 258 ~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l 298 (1057)
.+|.+++-+. ++.||++|+.+ +.+.||+.
T Consensus 278 ~~ITcLais~--------DgtlLlSGd~d----g~VcvWdi 306 (476)
T KOG0646|consen 278 SAITCLAIST--------DGTLLLSGDED----GKVCVWDI 306 (476)
T ss_pred cceeEEEEec--------CccEEEeeCCC----CCEEEEec
Confidence 4899886654 67899999888 56777663
No 156
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.48 E-value=4.7e-12 Score=131.08 Aligned_cols=171 Identities=17% Similarity=0.149 Sum_probs=123.0
Q ss_pred CCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeE--Eeecccce-eee-eecCCCCCEEEEEEec-CCCeE
Q 001538 427 PLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKL--ICALDAEV-QGI-EVAGSRAPVSTLSFCF-INSSL 501 (1057)
Q Consensus 427 pl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~--l~~l~~~v-~~i-~l~~~~~~V~~v~fsp-d~~~L 501 (1057)
|+.|++.++. -....++++++|+.||+|-+||+....... -++.++.. ... --.+|..+|+.+.|-| |..++
T Consensus 41 ~HgGsvNsL~---id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 41 PHGGSVNSLQ---IDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred cCCCccceee---eccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4556555432 234568899999999999999987543100 01111100 000 1237999999999987 77899
Q ss_pred EEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC---CEEEEEeCCceEE
Q 001538 502 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG---AKLAVGFECGRVA 578 (1057)
Q Consensus 502 avg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g---~~lA~G~~dG~V~ 578 (1057)
.+++-|.++++||..+-+... .|. -.+.|.+-++||-. -++|+|+.+-.|+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~-------------------------~F~-me~~VYshamSp~a~sHcLiA~gtr~~~Vr 171 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV-------------------------DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVR 171 (397)
T ss_pred ecccccceEEEeecccceeeE-------------------------Eee-cCceeehhhcChhhhcceEEEEecCCCcEE
Confidence 999999999999987644321 221 24566666677643 3799999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 579 VLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 579 vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
++|+..|..-+.+ +||...|.++.|++ ...-+|++|+.||.|++||..
T Consensus 172 LCDi~SGs~sH~L---sGHr~~vlaV~Wsp---------------------~~e~vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 172 LCDIASGSFSHTL---SGHRDGVLAVEWSP---------------------SSEWVLATGSADGAIRLWDIR 219 (397)
T ss_pred EEeccCCcceeee---ccccCceEEEEecc---------------------CceeEEEecCCCceEEEEEee
Confidence 9999999987765 56999999999993 224568999999999999964
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.48 E-value=1.6e-09 Score=124.88 Aligned_cols=370 Identities=21% Similarity=0.329 Sum_probs=232.9
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCc-eeeeecC-CC-CEEEEEE-ecCCc-EEEE-EccCCcEEEEEEe
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCLKW-ES-NITAFSV-ISGSH-FMYI-GDENGLMSVIKYD 97 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~-~l~tl~~-~~-~Ita~~~-sp~~~-~l~v-G~~~G~v~v~~~d 97 (1057)
.+...+..+.|.+.+..++..+.|+.+.+|+...+. .+..+.. .. .+..+.+ .+++. .++. +..++.+.+|++.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 445679999999999889999899999999999887 5555654 32 6777776 77777 4444 3448888888765
Q ss_pred CCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC-CCEEEEEEccCCeEEEEecCCcccccCC
Q 001538 98 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDG 176 (1057)
Q Consensus 98 ~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~-dG~I~lWdl~~~~~~~~~~~~~~~~~~~ 176 (1057)
... ... ..+ ..|...|..+.|+| ++..++.+.. ++.+.+|++.+++.+..+..
T Consensus 143 ~~~-~~~---~~~------------~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 196 (466)
T COG2319 143 TPG-KLI---RTL------------EGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-------- 196 (466)
T ss_pred CCC-eEE---EEE------------ecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEeecc--------
Confidence 411 111 111 22455788999999 5666777775 99999999998777766554
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCC-EEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeeccccc
Q 001538 177 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 255 (1057)
Q Consensus 177 ~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~-~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~ 255 (1057)
| ...|.++.|+ |++. .+++++.|++|.+||...+. .....+..
T Consensus 197 -~--------------------~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~------------~~~~~~~~-- 240 (466)
T COG2319 197 -H--------------------TDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGK------------LLRSTLSG-- 240 (466)
T ss_pred -C--------------------CCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCc------------EEeeecCC--
Confidence 2 7889999999 9998 56665999999999775321 00000000
Q ss_pred CCcc-EEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCC
Q 001538 256 RRLP-VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATV 334 (1057)
Q Consensus 256 ~~~p-I~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g 334 (1057)
+... +. .|.. ++.
T Consensus 241 ~~~~~~~--~~~~--------~~~-------------------------------------------------------- 254 (466)
T COG2319 241 HSDSVVS--SFSP--------DGS-------------------------------------------------------- 254 (466)
T ss_pred CCcceeE--eECC--------CCC--------------------------------------------------------
Confidence 0000 00 0100 001
Q ss_pred CCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccc
Q 001538 335 GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKL 414 (1057)
Q Consensus 335 ~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~ 414 (1057)
.++..+.++.+.+||.... . ... .....|...+.++
T Consensus 255 -----~~~~~~~d~~~~~~~~~~~-------~-------~~~-~~~~~~~~~v~~~------------------------ 290 (466)
T COG2319 255 -----LLASGSSDGTIRLWDLRSS-------S-------SLL-RTLSGHSSSVLSV------------------------ 290 (466)
T ss_pred -----EEEEecCCCcEEEeeecCC-------C-------cEE-EEEecCCccEEEE------------------------
Confidence 2233455667777762110 0 000 0000011111111
Q ss_pred cCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEE
Q 001538 415 HSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSF 494 (1057)
Q Consensus 415 ~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~f 494 (1057)
.+.+++..+++++.|+.+++||........... ...|...|..+.|
T Consensus 291 -------------------------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 336 (466)
T COG2319 291 -------------------------AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT---------LKGHEGPVSSLSF 336 (466)
T ss_pred -------------------------EECCCCCEEEEeeCCCcEEEEEcCCCceEEEee---------ecccCCceEEEEE
Confidence 133455567779999999999888765221111 1134447899999
Q ss_pred ecCCCeEEEE-ecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEE-Ee
Q 001538 495 CFINSSLAVG-NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAV-GF 572 (1057)
Q Consensus 495 spd~~~Lavg-~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~-G~ 572 (1057)
.+++..++++ ..|+.+.+|++...... .... ....+..+.+++ ...+.. +.
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------------------------~~~~-~~~~~~~~~~~~-~~~~~~~~~ 389 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPL-------------------------KTLE-GHSNVLSVSFSP-DGRVVSSGS 389 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecCCCcee-------------------------EEec-CCceEEEEEECC-CCCEEEEec
Confidence 4332455555 67889999988654310 0111 112288899988 533443 79
Q ss_pred CCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 573 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 573 ~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
.++.+.+||............ +...+....+. +++..++.++.++++.+|+..+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 390 TDGTVRLWDLSTGSLLRNLDG---HTSRVTSLDFS----------------------PDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCceEEEecccCeeeeeccC---CCCcEEEEEEC----------------------CCCcEEEEecCCCcEEEEeccC
Confidence 999999999998877765533 22677777776 6788889999999999999877
No 158
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=4.6e-14 Score=161.14 Aligned_cols=161 Identities=20% Similarity=0.289 Sum_probs=137.6
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
-+..||.+|.|......|++++++|+|+||||+..+.++++..+ .+++.+.|.|.+.|.+.|+.|+++.+|+.... |+
T Consensus 68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc 146 (825)
T KOG0267|consen 68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GC 146 (825)
T ss_pred ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-Cc
Confidence 35689999999999989999999999999999999999998754 78999999999999999999999888864321 22
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
.. .| .+|...|.++.|+| +|.+++.+.+|.+++|||+..|++...|.. |
T Consensus 147 ~~--~~--------------~s~~~vv~~l~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~---------~---- 195 (825)
T KOG0267|consen 147 SH--TY--------------KSHTRVVDVLRLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKS---------H---- 195 (825)
T ss_pred ee--ee--------------cCCcceeEEEeecC--CCceeeccCCcceeeeeccccccccccccc---------c----
Confidence 11 01 22556789999999 799999999999999999999999988775 2
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
+.+|.++.|| |..-.+++|+.|++++|||+++..
T Consensus 196 ----------------e~~v~sle~h-p~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 196 ----------------EGKVQSLEFH-PLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ----------------cccccccccC-chhhhhccCCCCceeeeeccceeE
Confidence 7788899999 988899999999999999998754
No 159
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.9e-11 Score=144.73 Aligned_cols=167 Identities=17% Similarity=0.288 Sum_probs=114.2
Q ss_pred CeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec----CCCCEEEEEEecCC--cEEEEEccCCcEEEEE-EeCCC
Q 001538 28 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK----WESNITAFSVISGS--HFMYIGDENGLMSVIK-YDADE 100 (1057)
Q Consensus 28 ~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~----~~~~Ita~~~sp~~--~~l~vG~~~G~v~v~~-~d~~~ 100 (1057)
+-+.+.|+|=...+++++....|+|||.+.++.+..+. ....|+.+.+.... ..+++|+.||.|+||+ |....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 45667788767678888888999999999999987774 34689999988754 4789999999999997 22210
Q ss_pred CceeccCcccchhhhhhhcCC-CCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccC
Q 001538 101 GKLFQLPYNISADALSEKAGF-PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 179 (1057)
Q Consensus 101 ~~l~~~~~~i~~~~~~~~~g~-~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (1057)
. +..+..-|. .-.+. +...... .-+.|+-. .| +|+++++-..|+|||...-.+++...+
T Consensus 1146 ~-----~~eLVTaw~-~Ls~~~~~~r~~~-~v~dWqQ~-~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~----------- 1205 (1387)
T KOG1517|consen 1146 K-----KPELVTAWS-SLSDQLPGARGTG-LVVDWQQQ-SG-HLLVTGDVRSIRIWDAHKEQVVADIPY----------- 1205 (1387)
T ss_pred C-----CceeEEeec-cccccCccCCCCC-eeeehhhh-CC-eEEecCCeeEEEEEecccceeEeeccc-----------
Confidence 1 111111111 00111 1122222 55677764 35 588888888999999987776654443
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 180 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 180 ~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
. ...-||++.-....|+.|+.|+.||+|+++|...
T Consensus 1206 ---~--------------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1206 ---G--------------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred ---C--------------CCccceeecccccCCceEEEeecCCceEEeeccc
Confidence 1 1456777765446689999999999999999843
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.45 E-value=4.3e-12 Score=135.57 Aligned_cols=205 Identities=14% Similarity=0.255 Sum_probs=142.2
Q ss_pred CCCeeEEEEEc--CCcEEEEEeCCCcEEEEECCCC----------------ceeeeecC-CCCEEEEEEecCCc-EEEEE
Q 001538 26 QLPYKNLEFLQ--NQGFLISITNDNEIQVWSLESR----------------SLACCLKW-ESNITAFSVISGSH-FMYIG 85 (1057)
Q Consensus 26 ~~~v~~L~F~~--~~~~Lvs~s~d~~I~VWdl~s~----------------~~l~tl~~-~~~Ita~~~sp~~~-~l~vG 85 (1057)
...++.++-.+ +.-+.++-+..|.|+|||+... +.++++.. .+.=.++.|+|-.. .+++|
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 33455444443 3446777778899999997541 22344432 24557888888433 47888
Q ss_pred ccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCC---eE
Q 001538 86 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA---QI 162 (1057)
Q Consensus 86 ~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~---~~ 162 (1057)
+-.+.|++|.+...+++.-+.||. +|...|-.|+|+|.. .+.+++++.||+|+|||++.+ .+
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~~Pf~--------------gH~~SVEDLqWSptE-~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQRPFT--------------GHTKSVEDLQWSPTE-DGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ccccceEeeeeccCceeecCcccc--------------ccccchhhhccCCcc-CceEEeeecCceEEEEEecCCCccce
Confidence 888889999876655544433333 256679999999984 557999999999999999988 33
Q ss_pred EEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCC
Q 001538 163 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGS 242 (1057)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~ 242 (1057)
+.+-. | ...|..+.|+ .+-.+||+|..||+++|||++....
T Consensus 296 ~~~kA----------h--------------------~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~~-------- 336 (440)
T KOG0302|consen 296 VSTKA----------H--------------------NSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFKS-------- 336 (440)
T ss_pred eEeec----------c--------------------CCceeeEEcc-CCcceeeecCCCceEEEEEhhhccC--------
Confidence 33311 2 6789999999 7777999999999999999976532
Q ss_pred CCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcC
Q 001538 243 RNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 299 (1057)
Q Consensus 243 ~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~ 299 (1057)
..|+-. ...|+.||.++.|.+. ....+.++|.| +.+++|+|.
T Consensus 337 ~~pVA~----fk~Hk~pItsieW~p~-------e~s~iaasg~D----~QitiWDls 378 (440)
T KOG0302|consen 337 GQPVAT----FKYHKAPITSIEWHPH-------EDSVIAASGED----NQITIWDLS 378 (440)
T ss_pred CCccee----EEeccCCeeEEEeccc-------cCceEEeccCC----CcEEEEEee
Confidence 124433 3347889999999753 33444445544 468888754
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.43 E-value=1.2e-11 Score=135.81 Aligned_cols=86 Identities=21% Similarity=0.228 Sum_probs=69.0
Q ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccc
Q 001538 444 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 444 ~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~ 523 (1057)
.+.+|++-+.|..|.+||.+.....--.+ -..+.++|+|.++|.+|+.|+..|.|+.||++..+
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s~~s~~~l~------------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k---- 283 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRSQASTDRLT------------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK---- 283 (673)
T ss_pred ccceEEEecccceEEEeecccccccceee------------ecCCcceeeecCCceEEEeecCCceEEEEecccCC----
Confidence 45588999999999999998665211111 12489999999999999999999999999997643
Q ss_pred eeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC
Q 001538 524 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG 565 (1057)
Q Consensus 524 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g 565 (1057)
+|+.+++.|...|++|+|-+.-
T Consensus 284 --------------------~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 284 --------------------APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --------------------CCceEeeecccceeEEEeeecc
Confidence 3456888999999999997764
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.42 E-value=1.6e-11 Score=129.25 Aligned_cols=262 Identities=15% Similarity=0.191 Sum_probs=173.2
Q ss_pred CCCCEEEEEEecCCC----eEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEE
Q 001538 485 SRAPVSTLSFCFINS----SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ 560 (1057)
Q Consensus 485 ~~~~V~~v~fspd~~----~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa 560 (1057)
+...-..++|+-|.. +||+|+.-|.|+|.|+..+... ..+.+|...|+.|.
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-------------------------~~~~ghG~sINeik 142 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-------------------------KNYRGHGGSINEIK 142 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-------------------------cceeccCccchhhh
Confidence 444666777776544 7999999999999998765432 35678999999999
Q ss_pred EcCC-CCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEe
Q 001538 561 FTSS-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 639 (1057)
Q Consensus 561 ~S~~-g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt 639 (1057)
|.|+ -++|.+|+.|-.|++||+++..++..+...+||...|.|+.|+ .++..|++++
T Consensus 143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~----------------------~~gd~i~ScG 200 (385)
T KOG1034|consen 143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS----------------------LDGDRIASCG 200 (385)
T ss_pred cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc----------------------CCCCeeeccC
Confidence 9996 4789999999999999999999999998899999999999999 7889999999
Q ss_pred cCCeEEEEeCCCccee----ecCccccCCcceeEEEEeecCCCCCCCcccccchhhhcccCCCCCCCCCCcccCCCcccc
Q 001538 640 KDAKISIVGGSSENMI----SSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEH 715 (1057)
Q Consensus 640 ~dg~i~v~d~~tg~~i----~~~~i~p~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1057)
.|.+|++|++..-++- .+.+..|++.-+. .|..+ ...|+.+...+...-.+-
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p-----------fpt~~-------------~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP-----------FPTPK-------------THFPDFSTTDIHRNYVDC 256 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCc-----------CCccc-------------cccccccccccccchHHH
Confidence 9999999998754322 1222333332110 00000 001222211111110000
Q ss_pred ccccccccCCCCCCCceEEEEecCeeEEeeccccccccceeeeeeccCCcce-------------eeeeeeeCCceeEEE
Q 001538 716 LFSSENACSGESSNDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCC-------------WASTIEKDEKVCGLL 782 (1057)
Q Consensus 716 ~~~~~~~~~~~~~~~~~v~~~se~~ir~~s~~~~~~g~~k~~~K~~~~~~~~-------------~~~~~~~~~~~~~l~ 782 (1057)
. .-. .+..+==.||++|-.|..+++ .+.+|+++-++.|+ |-.-|..|...-+|+
T Consensus 257 v-----rw~----gd~ilSkscenaI~~w~pgkl----~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 257 V-----RWF----GDFILSKSCENAIVCWKPGKL----EESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred H-----HHH----hhheeecccCceEEEEecchh----hhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 0 001 133444567999999988653 34455554333333 333333355555889
Q ss_pred EEEeeCcEEEecCCChhhcccccccceeeeccccccccccccc-Ccc-EEEEcC
Q 001538 783 LLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQ-ITLANG 834 (1057)
Q Consensus 783 ~l~~~G~i~i~SlP~L~~~~~~~~~~~~~~~~~~~~~~~~~~s-~G~-i~l~~~ 834 (1057)
|..+.|.|+++.|-.-++...+.|. ++....-.+.+|+| +|- |++++.
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~----~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLT----HSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEE----eccccceeeeeeecccCcEEEEEeC
Confidence 9999999999999988887554443 24433335556888 998 455544
No 163
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.41 E-value=7.4e-11 Score=139.04 Aligned_cols=265 Identities=16% Similarity=0.196 Sum_probs=153.0
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCce
Q 001538 199 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR 278 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~ 278 (1057)
...|+|++|++-+...+|.|..+|.|.+||+..+... +...+......|..|+..+.|.... .+..
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~---------~~s~ls~~~~sh~~~v~~vvW~~~~-----~~~~ 307 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT---------PPSGLSALEVSHSEPVTAVVWLQNE-----HNTE 307 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC---------CCcccccccccCCcCeEEEEEeccC-----CCCc
Confidence 6789999999667788999999999999999876321 1222233455688999999998733 2333
Q ss_pred EEEecCCCCCCcceEEEEEcCcccc-cccc----eeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEe
Q 001538 279 LFVYGGDEIGSEEVLTVLSLEWSSG-MENL----RCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFY 353 (1057)
Q Consensus 279 Llv~gg~~~~~~~~ltvl~l~~~~~-~~~~----~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~ 353 (1057)
+++++.| ..+..|+.+--.. .+.. +.+.............+.+.+ .+|..+++.++.|.|+.-
T Consensus 308 -f~s~ssD----G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~-------~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 308 -FFSLSSD----GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP-------TDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred -eEEEecC----CcEeeeeccccccchhhcccccccccccccccccceeeEeecc-------CCCceEEEEcCCcEEEEE
Confidence 4444445 2344433210000 0000 000000001111223333333 345678888999998873
Q ss_pred eccchhhhhcccCCCCCCCCc--cc--ccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCC
Q 001538 354 DNASLTTLLSQQEKKPSVCPV--EF--PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLS 429 (1057)
Q Consensus 354 D~~~~~~~l~~~~~~~~~~~~--~~--~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~ 429 (1057)
+.... .++. .+ ......|..+|+++.
T Consensus 376 ~r~g~------------~~~~~~~~~~~~~~~~h~g~v~~v~-------------------------------------- 405 (555)
T KOG1587|consen 376 CRKGY------------TPAPEVSYKGHSTFITHIGPVYAVS-------------------------------------- 405 (555)
T ss_pred eccCC------------cccccccccccccccccCcceEeee--------------------------------------
Confidence 31110 0000 00 000001111221111
Q ss_pred CCCCCCCCccccCCCC-cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecC
Q 001538 430 GGVPSPVPITKCHSVD-RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEF 507 (1057)
Q Consensus 430 Gg~~~~~~~~~~~~~~-~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~d 507 (1057)
+.+-. .++.|++ |.+||||.-.... .+++.++ .+...|++++|||-.- .++++..|
T Consensus 406 -----------~nPF~~k~fls~g-DW~vriWs~~~~~-~Pl~~~~---------~~~~~v~~vaWSptrpavF~~~d~~ 463 (555)
T KOG1587|consen 406 -----------RNPFYPKNFLSVG-DWTVRIWSEDVIA-SPLLSLD---------SSPDYVTDVAWSPTRPAVFATVDGD 463 (555)
T ss_pred -----------cCCCccceeeeec-cceeEeccccCCC-Ccchhhh---------hccceeeeeEEcCcCceEEEEEcCC
Confidence 22222 2344444 9999999876322 1333332 3334699999999764 67888999
Q ss_pred ccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCC
Q 001538 508 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 584 (1057)
Q Consensus 508 G~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~ 584 (1057)
|.+.|||+..+... |++....+....+.+.++++|+.||+|+..|++.+|++..
T Consensus 464 G~l~iWDLl~~~~~-----------------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEE-----------------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceehhhhhccccC-----------------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999765432 1223333466778889999999999999999999999853
No 164
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.41 E-value=6.8e-11 Score=142.41 Aligned_cols=228 Identities=13% Similarity=0.204 Sum_probs=148.3
Q ss_pred EcCCCeEEEEEcCCCCCeeEEEEEcCC-cEEEEEeCCCcEEEEECCCC--c-----eeeeec-CCCCEEEEEEecCCcEE
Q 001538 12 IGGDGIEGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESR--S-----LACCLK-WESNITAFSVISGSHFM 82 (1057)
Q Consensus 12 ~g~~~~e~~~~~~~~~~v~~L~F~~~~-~~Lvs~s~d~~I~VWdl~s~--~-----~l~tl~-~~~~Ita~~~sp~~~~l 82 (1057)
|...|+-+-....+...|..++-+++. .+++++++||+|+|||+.+- . ...++. ..+.++++...+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 444555554455666777788888776 89999999999999998652 1 122333 34789999999999999
Q ss_pred EEEccCCcEEEEEEeCCC-CceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCC-eEEEEECCCEEEEEEccCC
Q 001538 83 YIGDENGLMSVIKYDADE-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVSEA 160 (1057)
Q Consensus 83 ~vG~~~G~v~v~~~d~~~-~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~-~lli~~~dG~I~lWdl~~~ 160 (1057)
++|+.||.|+++.+|.-. .++....-+++++ ...+.|+++.-.-.+.++ +|+.+...+.|..||++..
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~----------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL----------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccc----------cCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999888887621 1111001223322 123446555432223455 6777777899999999877
Q ss_pred eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCC
Q 001538 161 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQT 240 (1057)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~ 240 (1057)
....+... + .+.+.|+++|.+ |-+.+++.|..-|.+.+||+.-+.
T Consensus 1184 ~~~w~lk~-------~--------------------~~hG~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~------- 1228 (1431)
T KOG1240|consen 1184 HDAWRLKN-------Q--------------------LRHGLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRV------- 1228 (1431)
T ss_pred hhHHhhhc-------C--------------------ccccceeEEEec-CCceEEEEecCCceEEEEEeecCc-------
Confidence 66655443 1 226889999999 999999999999999999996542
Q ss_pred CCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001538 241 GSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSL 298 (1057)
Q Consensus 241 ~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l 298 (1057)
++. .|.+. ++.||..+ |.|.. .......|++|... .+-+.+|.+
T Consensus 1229 ----~i~--sw~~P-~~~~i~~v-~~~~~----~~~~S~~vs~~~~~--~nevs~wn~ 1272 (1431)
T KOG1240|consen 1229 ----PIL--SWEHP-ARAPIRHV-WLCPT----YPQESVSVSAGSSS--NNEVSTWNM 1272 (1431)
T ss_pred ----eee--cccCc-ccCCcceE-Eeecc----CCCCceEEEecccC--CCceeeeec
Confidence 222 23333 34677776 44422 12225555555521 133555443
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.40 E-value=6.7e-10 Score=126.77 Aligned_cols=143 Identities=14% Similarity=0.157 Sum_probs=96.1
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eeeeecCCCCEEEEEEecCCcEEEEEcc-CCcEEEEEEeCCCCceeccCcccchhhhh
Q 001538 41 LISITNDNEIQVWSLES-RS--LACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALS 116 (1057)
Q Consensus 41 Lvs~s~d~~I~VWdl~s-~~--~l~tl~~~~~Ita~~~sp~~~~l~vG~~-~G~v~v~~~d~~~~~l~~~~~~i~~~~~~ 116 (1057)
+++...++.|.+|++.+ ++ ++.++...+....++++|++++||++.. ++.|.+|.++ +.+.+... ..++
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~-~~~~----- 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFA-AESP----- 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEe-eeec-----
Confidence 34446789999999964 44 4566655577888999999999998754 7777778876 34444310 0111
Q ss_pred hhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE-CCCEEEEEEccCCe-E---EEEecCCcccccCCccCCCCCCCCCcccC
Q 001538 117 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQ-I---IFVGGGKDLQLKDGVVDSPSEGDSTFLEG 191 (1057)
Q Consensus 117 ~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~-~dG~I~lWdl~~~~-~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 191 (1057)
....+..|+|+| +|++|+++. .++.|.+|++.+.. + +..+.+
T Consensus 78 --------~~~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~----------------------- 124 (330)
T PRK11028 78 --------LPGSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG----------------------- 124 (330)
T ss_pred --------CCCCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-----------------------
Confidence 112457899999 687777664 58899999996432 2 111111
Q ss_pred CCCCCCCCCCeEEEEEecCCCCEEE-EEEcCCcEEEEeCCC
Q 001538 192 ISEHQPEEKEISALCWASSSGSILA-VGYIDGDILLWNTST 231 (1057)
Q Consensus 192 ~~~~~~~~~~Vtsl~ws~pdG~~la-tg~~DG~I~lWd~~~ 231 (1057)
.....+++|+ |||++++ +...++.|.+||+.+
T Consensus 125 -------~~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 125 -------LEGCHSANID-PDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred -------CCcccEeEeC-CCCCEEEEeeCCCCEEEEEEECC
Confidence 2345678899 9998885 455679999999854
No 166
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.1e-10 Score=135.14 Aligned_cols=150 Identities=14% Similarity=0.159 Sum_probs=110.4
Q ss_pred EEcCCcEEEEEeCCCcEEEEECCCCceeeeec------CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCC--CCceec
Q 001538 34 FLQNQGFLISITNDNEIQVWSLESRSLACCLK------WESNITAFSVISGSHFMYIGDENGLMSVIKYDAD--EGKLFQ 105 (1057)
Q Consensus 34 F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~------~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~--~~~l~~ 105 (1057)
+.+.+ -...+-.+..+.+|+..++. -++.. +.-.++|++++|.++++++|+.+|.|.||. |.. ...++
T Consensus 168 ~~~~g-e~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~-d~~~~~~~~t- 243 (792)
T KOG1963|consen 168 DNNSG-EFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR-DFGSSDDSET- 243 (792)
T ss_pred EcCCc-eEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe-cccccccccc-
Confidence 44444 23333455667788887755 22222 113479999999999999999999988886 222 22233
Q ss_pred cCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCC
Q 001538 106 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 185 (1057)
Q Consensus 106 ~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 185 (1057)
...++| |..+|.+++|++ +|..|++|+..|.+.+|.+.+++ .+.+..
T Consensus 244 -~t~lHW------------H~~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR----------------- 290 (792)
T KOG1963|consen 244 -CTLLHW------------HHDEVNSLSFSS--DGAYLLSGGREGVLVLWQLETGK-KQFLPR----------------- 290 (792)
T ss_pred -ceEEEe------------cccccceeEEec--CCceEeecccceEEEEEeecCCC-cccccc-----------------
Confidence 334455 356899999999 79999999999999999999987 222211
Q ss_pred CCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 186 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 186 ~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
-..+|..+.|+ ||+...++..+|+.|.+-.+++..
T Consensus 291 ------------Lgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 291 ------------LGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred ------------cCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchh
Confidence 05689999999 999999999999999999887765
No 167
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.39 E-value=6.2e-11 Score=134.33 Aligned_cols=179 Identities=14% Similarity=0.160 Sum_probs=111.8
Q ss_pred EEEEc--CC-cEEEEEeCCCcEEEEECCCCcee------ee-ecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCC
Q 001538 32 LEFLQ--NQ-GFLISITNDNEIQVWSLESRSLA------CC-LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 101 (1057)
Q Consensus 32 L~F~~--~~-~~Lvs~s~d~~I~VWdl~s~~~l------~t-l~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~ 101 (1057)
..|++ +. ..|+.+..||.|.++|..+.... .. +.+.+.|-.+.+.|.-..|+..+.|-++++|.+...
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-- 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-- 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc--
Confidence 56765 33 36777788999999998764432 11 124478999999997778888888998888876543
Q ss_pred ceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCC
Q 001538 102 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 181 (1057)
Q Consensus 102 ~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p 181 (1057)
++. .-+ .-.+|...|.+++|+|.| ...+++|++||.|.|||++.......-.. +.+.- ..|
T Consensus 133 ~l~--G~~-----------~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~-~~~~~-~~~--- 193 (720)
T KOG0321|consen 133 RLV--GGR-----------LNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEF-DNRIY-GRH--- 193 (720)
T ss_pred eee--cce-----------eecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHH-hhhhh-ccc---
Confidence 333 110 124577889999999984 66799999999999999986652211000 00000 001
Q ss_pred CCCCCC---cccCCCCCCCC----CCCeEEEEEecCCCCEEEEEEc-CCcEEEEeCCCCC
Q 001538 182 SEGDST---FLEGISEHQPE----EKEISALCWASSSGSILAVGYI-DGDILLWNTSTTA 233 (1057)
Q Consensus 182 ~~~~~~---~~~~~~~~~~~----~~~Vtsl~ws~pdG~~latg~~-DG~I~lWd~~~~~ 233 (1057)
..++.. .+....-.+.. ...|+.+.|- |..+||+++. |+.|+|||+....
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccc
Confidence 000000 00000001111 3346666665 8888999888 9999999998753
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.38 E-value=4.5e-11 Score=134.99 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=107.1
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-----eEEEEecCccEEEEEe
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-----SLAVGNEFGLVYIYNL 515 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-----~Lavg~~dG~V~l~~~ 515 (1057)
...+|++++-|+.||+|.|-+....+-..+ -...|.+.+|.+|+|+|.+. .+++...+.++.+|.+
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~gEek~~I---------~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNGEEKVKI---------ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCCCcceEE---------eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence 345778999999999999987654431111 12336788999999999876 5777777778888877
Q ss_pred cCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCC
Q 001538 516 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 595 (1057)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~ 595 (1057)
....... -....-.=.||++.++|.++.+|+.||.+.++-..+ -.+.+..-
T Consensus 211 sG~~Igk--------------------------~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-vrLGTvg~-- 261 (1081)
T KOG1538|consen 211 SGKQIGK--------------------------DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-VRLGTVGE-- 261 (1081)
T ss_pred cceeecc--------------------------cccCCCCchhheeccCCcEEEEccCCCceEEEeecC-eEEeeccc--
Confidence 5432110 001112236899999999999999999999998655 33333322
Q ss_pred CCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 596 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 596 g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
...-|.+++.. |.+++.+.|..||+|.-|++.
T Consensus 262 -~D~WIWtV~~~----------------------PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 262 -QDSWIWTVQAK----------------------PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred -cceeEEEEEEc----------------------cCCceEEEEEccCeeehhhhH
Confidence 45678888887 889999999999999998753
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=5.6e-12 Score=151.76 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=115.3
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCc---cEEEEEecCCCCc
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFG---LVYIYNLNGSLDA 521 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG---~V~l~~~~~~~~~ 521 (1057)
.+|++|+.+|.+-|||++..+ ++-.+ ...+.+..+..|+|+|+.. .|+++++|. .|.+||++--..
T Consensus 175 hILAS~s~sg~~~iWDlr~~~--pii~l-------s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass- 244 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKK--PIIKL-------SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS- 244 (1049)
T ss_pred HHhhccCCCCCceeccccCCC--ccccc-------ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-
Confidence 478999999999999998875 22111 1112234688999999876 566676653 688999864322
Q ss_pred cceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC-CEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCC
Q 001538 522 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP 600 (1057)
Q Consensus 522 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g-~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~ 600 (1057)
|...+.+|...|.+|.|++.+ ++|++++.|++|.+|+.++++++..+.. ...-
T Consensus 245 -----------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~nW 298 (1049)
T KOG0307|consen 245 -----------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QGNW 298 (1049)
T ss_pred -----------------------chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC---CCcc
Confidence 123567899999999999976 8999999999999999999999998755 5677
Q ss_pred eEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcc
Q 001538 601 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 653 (1057)
Q Consensus 601 V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~ 653 (1057)
+..+.|++. +-.++++++-||.|-|+.+.++.
T Consensus 299 ~fdv~w~pr---------------------~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDVQWCPR---------------------NPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeeecCC---------------------CcchhhhheeccceeeeeeecCC
Confidence 888999832 12468889999999999987655
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=2.8e-11 Score=132.18 Aligned_cols=184 Identities=14% Similarity=0.177 Sum_probs=139.0
Q ss_pred ccccCCcEEEEcCCC---eEEEEEcC-------------------CCCCeeEEEEEcCC-cEEEEEeCCCcEEEEECCCC
Q 001538 2 CLCRDGRIKVIGGDG---IEGLLISP-------------------SQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESR 58 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~---~e~~~~~~-------------------~~~~v~~L~F~~~~-~~Lvs~s~d~~I~VWdl~s~ 58 (1057)
|||-|-+|.||+.+= +.-.+++. ++..|.+|.|..+- ..|++++.|.+|++||+.++
T Consensus 197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g 276 (463)
T KOG0270|consen 197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG 276 (463)
T ss_pred EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC
Confidence 789899999998653 22222222 33456678877655 36999999999999999999
Q ss_pred ceeeeec-CCCCEEEEEEecC-CcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCc
Q 001538 59 SLACCLK-WESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 136 (1057)
Q Consensus 59 ~~l~tl~-~~~~Ita~~~sp~-~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP 136 (1057)
++..++. +..+|.+++|.|. ..+|++|+.+|+|.+..+.. ...++.... -.+.|-.++|+|
T Consensus 277 ~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~----~~~s~~~wk-------------~~g~VEkv~w~~ 339 (463)
T KOG0270|consen 277 KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD----PSNSGKEWK-------------FDGEVEKVAWDP 339 (463)
T ss_pred CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC----ccccCceEE-------------eccceEEEEecC
Confidence 9999997 5589999999986 56899999999777765432 111111111 145799999999
Q ss_pred CCCCCeEEEEECCCEEEEEEccCC-eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEE
Q 001538 137 NSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 215 (1057)
Q Consensus 137 ~d~g~~lli~~~dG~I~lWdl~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~l 215 (1057)
.. -..++++..||+|+-+|++.. +++.+... | ..+|++++++...-..+
T Consensus 340 ~s-e~~f~~~tddG~v~~~D~R~~~~~vwt~~A---------H--------------------d~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 340 HS-ENSFFVSTDDGTVYYFDIRNPGKPVWTLKA---------H--------------------DDEISGLSVNIQTPGLL 389 (463)
T ss_pred CC-ceeEEEecCCceEEeeecCCCCCceeEEEe---------c--------------------cCCcceEEecCCCCcce
Confidence 74 445889999999999999865 66665543 4 78999999985556789
Q ss_pred EEEEcCCcEEEEeCCCC
Q 001538 216 AVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 216 atg~~DG~I~lWd~~~~ 232 (1057)
+|++.|+.+++|++...
T Consensus 390 ~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVD 406 (463)
T ss_pred eeccccceEEEEeecCC
Confidence 99999999999999654
No 171
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.35 E-value=1.8e-11 Score=137.46 Aligned_cols=205 Identities=15% Similarity=0.222 Sum_probs=144.8
Q ss_pred EEEEEcCCcEEEE--EeCCCcEEEEECCC-Cce----eeeecCCCCEEEEEEec-CCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 31 NLEFLQNQGFLIS--ITNDNEIQVWSLES-RSL----ACCLKWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 31 ~L~F~~~~~~Lvs--~s~d~~I~VWdl~s-~~~----l~tl~~~~~Ita~~~sp-~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
+=-|..++.+.+. .+..|.|-|+++.. |++ +-++.....|+.+.|+| +...|++++++|.|++|.+....+.
T Consensus 584 snGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 584 SNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred cCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 3347777766553 34678999999976 444 23334457899999998 5678999999999999998765421
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 182 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~ 182 (1057)
-. ..-+ .+....|...|++|.|||-. .+.|++++.|-+|.|||+.+++....+.+ |
T Consensus 664 e~---~~tP-------e~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~~~~~~~l~g---------H---- 719 (1012)
T KOG1445|consen 664 EN---EMTP-------EKILTIHGEKITSLRFHPLA-ADVLAVASYDSTIELWDLANAKLYSRLVG---------H---- 719 (1012)
T ss_pred cc---cCCc-------ceeeecccceEEEEEecchh-hhHhhhhhccceeeeeehhhhhhhheecc---------C----
Confidence 11 0001 11224567789999999974 55799999999999999999998888776 4
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEE
Q 001538 183 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 262 (1057)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~ 262 (1057)
+..|..++|+ |||+.+||...||+|++++..++...+..... + ....-..
T Consensus 720 ----------------tdqIf~~AWS-pdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g---p----------vgtRgAR 769 (1012)
T KOG1445|consen 720 ----------------TDQIFGIAWS-PDGRRIATVCKDGTLRVYEPRSREQPVYEGKG---P----------VGTRGAR 769 (1012)
T ss_pred ----------------cCceeEEEEC-CCCcceeeeecCceEEEeCCCCCCCccccCCC---C----------ccCccee
Confidence 8899999999 99999999999999999999887643311110 1 1122245
Q ss_pred EEeeccCcCCCCCCceEEEecCCCCCCcceEEEEE
Q 001538 263 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 297 (1057)
Q Consensus 263 l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~ 297 (1057)
+.|.| +++++++.|-+..++..+.+++
T Consensus 770 i~wac--------dgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 770 ILWAC--------DGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred EEEEe--------cCcEEEEecccccchhhhhhhh
Confidence 67887 4566666555544444444433
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.35 E-value=7.5e-11 Score=123.89 Aligned_cols=161 Identities=19% Similarity=0.243 Sum_probs=116.3
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCCC-ceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecC
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNG 517 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~~-~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~ 517 (1057)
.|++++..|++|. ...||++|.+.+ ...+.+....+- --+..+-|.+++|+|-.. .+|+|+...++-||.-..
T Consensus 165 ~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~----k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 165 QFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG----KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred EecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc----cccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 5899999988875 578999999543 322222211110 012345789999999554 999999999999997644
Q ss_pred CCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeC-CceEEEEeCCCC-eEEEEeecCC
Q 001538 518 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE-CGRVAVLDMNLL-SVLFFTDDIS 595 (1057)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~-dG~V~vwDi~~~-~~l~~~~~~~ 595 (1057)
.. |..++.+|.+.||.|+|.++|+.|.+|.. |-.|..||++.- ..++.+..
T Consensus 240 ~~-------------------------pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r-- 292 (406)
T KOG2919|consen 240 RR-------------------------PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER-- 292 (406)
T ss_pred CC-------------------------ceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh--
Confidence 32 33567799999999999999999999874 556999999753 44454432
Q ss_pred CCCC-CeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC-cc
Q 001538 596 GSSS-PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS-EN 653 (1057)
Q Consensus 596 g~~~-~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t-g~ 653 (1057)
|.. -=..|.|.. .|++++|++|+.||.|.+||..+ |+
T Consensus 293 -hv~~TNQRI~FDl--------------------d~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 293 -HVGDTNQRILFDL--------------------DPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred -hccCccceEEEec--------------------CCCCceeeccCCCccEEEEecCCCCC
Confidence 333 334667763 37899999999999999999987 66
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.4e-11 Score=148.53 Aligned_cols=283 Identities=20% Similarity=0.325 Sum_probs=181.7
Q ss_pred eCCCcEEEEECCCC------ceeeeecCCCCEEEEEEecCCcE----EEEEccCCcEEEEEEeCCCCceeccCcccchhh
Q 001538 45 TNDNEIQVWSLESR------SLACCLKWESNITAFSVISGSHF----MYIGDENGLMSVIKYDADEGKLFQLPYNISADA 114 (1057)
Q Consensus 45 s~d~~I~VWdl~s~------~~l~tl~~~~~Ita~~~sp~~~~----l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~ 114 (1057)
+.+.++++|.+... +.+.++....+...++|.+.++. ++-|++||+|-+|+-+.. +. +.
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~---~~-------~~- 104 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI---IA-------NA- 104 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhh---cc-------Cc-
Confidence 45777888876542 34556666778889999988776 888999998777764431 00 00
Q ss_pred hhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCC
Q 001538 115 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 194 (1057)
Q Consensus 115 ~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 194 (1057)
..+....-..|.++|..+.|+|. .+++|++|..||.|.|||+..-+.-.+.+.
T Consensus 105 ~~~~la~~~~h~G~V~gLDfN~~-q~nlLASGa~~geI~iWDlnn~~tP~~~~~-------------------------- 157 (1049)
T KOG0307|consen 105 SEEVLATKSKHTGPVLGLDFNPF-QGNLLASGADDGEILIWDLNKPETPFTPGS-------------------------- 157 (1049)
T ss_pred chHHHhhhcccCCceeeeecccc-CCceeeccCCCCcEEEeccCCcCCCCCCCC--------------------------
Confidence 00111122467899999999997 577899999999999999975222111110
Q ss_pred CCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCC
Q 001538 195 HQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSN 274 (1057)
Q Consensus 195 ~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~ 274 (1057)
......|.+++|.-...+.|++|+.+|.+.|||++... +|.++ +....+..+..+.|..+
T Consensus 158 -~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-----------pii~l--s~~~~~~~~S~l~WhP~------ 217 (1049)
T KOG0307|consen 158 -QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-----------PIIKL--SDTPGRMHCSVLAWHPD------ 217 (1049)
T ss_pred -CCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-----------ccccc--ccCCCccceeeeeeCCC------
Confidence 01267899999983345678999999999999997642 45543 33333455667788652
Q ss_pred CCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEee
Q 001538 275 IDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYD 354 (1057)
Q Consensus 275 ~~~~Llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D 354 (1057)
..++++++.+++. .. .|.+||
T Consensus 218 ~aTql~~As~dd~--~P---------------------------------------------------------viqlWD 238 (1049)
T KOG0307|consen 218 HATQLLVASGDDS--AP---------------------------------------------------------VIQLWD 238 (1049)
T ss_pred CceeeeeecCCCC--Cc---------------------------------------------------------eeEeec
Confidence 2456666555441 01 334455
Q ss_pred ccchhhhhcccCCCCCCCCcccccc-cCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCC
Q 001538 355 NASLTTLLSQQEKKPSVCPVEFPGV-IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVP 433 (1057)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~~~~~~-l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~ 433 (1057)
+.+.. .|.. +..|...|.++. |
T Consensus 239 -------lR~as---------sP~k~~~~H~~Gilsls-------------W---------------------------- 261 (1049)
T KOG0307|consen 239 -------LRFAS---------SPLKILEGHQRGILSLS-------------W---------------------------- 261 (1049)
T ss_pred -------ccccC---------Cchhhhcccccceeeec-------------c----------------------------
Confidence 22110 0100 011222221111 1
Q ss_pred CCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEE
Q 001538 434 SPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYI 512 (1057)
Q Consensus 434 ~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l 512 (1057)
...|.++++|++.|+.|-+|+..+++ .+..+. ....-+..|.|||..- .+++++-||.|-|
T Consensus 262 -------c~~D~~lllSsgkD~~ii~wN~~tgE--vl~~~p---------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 262 -------CPQDPRLLLSSGKDNRIICWNPNTGE--VLGELP---------AQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred -------CCCCchhhhcccCCCCeeEecCCCce--EeeecC---------CCCcceeeeeecCCCcchhhhheeccceee
Confidence 33455789999999999999999987 233332 1234689999999777 7888999999999
Q ss_pred EEecCCC
Q 001538 513 YNLNGSL 519 (1057)
Q Consensus 513 ~~~~~~~ 519 (1057)
|.+....
T Consensus 324 ~sl~~~~ 330 (1049)
T KOG0307|consen 324 YSLQGTD 330 (1049)
T ss_pred eeeecCC
Confidence 9997654
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.33 E-value=2e-08 Score=115.77 Aligned_cols=339 Identities=22% Similarity=0.362 Sum_probs=210.1
Q ss_pred cCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEe-CcCCCCC-e
Q 001538 65 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP-HPNSSGN-R 142 (1057)
Q Consensus 65 ~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~-sP~d~g~-~ 142 (1057)
.....|.++.+.+.+..++.+..++.+.+|.++.....+. .+... +...+..+.+ ++ ++. .
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~-------------~~~~~~~~~~~~~--~~~~~ 125 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK--SLEGL-------------HDSSVSKLALSSP--DGNSI 125 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE--EEecc-------------CCCceeeEEEECC--CcceE
Confidence 3457899999999999999999999888888765421111 01110 0135666666 66 455 4
Q ss_pred EEEE-ECCCEEEEEEccC-CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001538 143 VLIA-YENALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 220 (1057)
Q Consensus 143 lli~-~~dG~I~lWdl~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~ 220 (1057)
++.. ..++.+.+||+.. ......+.. | ...|..++|+ |++..++++..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~---------~--------------------~~~v~~~~~~-~~~~~~~~~~~ 175 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGKLIRTLEG---------H--------------------SESVTSLAFS-PDGKLLASGSS 175 (466)
T ss_pred EeccCCCCccEEEEEecCCCeEEEEEec---------C--------------------cccEEEEEEC-CCCCEEEecCC
Confidence 4443 4489999999997 555555544 2 6788899999 99999999886
Q ss_pred -CCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcC
Q 001538 221 -DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 299 (1057)
Q Consensus 221 -DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~ 299 (1057)
|+.+++|++..+. .+..+ ..+..+|..+.|.. .+..++.+
T Consensus 176 ~~~~~~~~~~~~~~-----------~~~~~----~~~~~~v~~~~~~~--------~~~~~~~~---------------- 216 (466)
T COG2319 176 LDGTIKLWDLRTGK-----------PLSTL----AGHTDPVSSLAFSP--------DGGLLIAS---------------- 216 (466)
T ss_pred CCCceEEEEcCCCc-----------eEEee----ccCCCceEEEEEcC--------CcceEEEE----------------
Confidence 9999999997631 11111 11344555555542 11111111
Q ss_pred cccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEeeccchhhhhcccCCCCCCCCcccccc
Q 001538 300 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 379 (1057)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~D~~~~~~~l~~~~~~~~~~~~~~~~~ 379 (1057)
...+|.+.+||.. .+ ......
T Consensus 217 --------------------------------------------~~~d~~i~~wd~~---------~~------~~~~~~ 237 (466)
T COG2319 217 --------------------------------------------GSSDGTIRLWDLS---------TG------KLLRST 237 (466)
T ss_pred --------------------------------------------ecCCCcEEEEECC---------CC------cEEeee
Confidence 1234455566511 00 000000
Q ss_pred cCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCCCccccCCCCcEEEEEeCCCcEEE
Q 001538 380 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 459 (1057)
Q Consensus 380 l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGtVri 459 (1057)
+..|.... . ..+++++..+++++.|+.+++
T Consensus 238 ~~~~~~~~-~-------------------------------------------------~~~~~~~~~~~~~~~d~~~~~ 267 (466)
T COG2319 238 LSGHSDSV-V-------------------------------------------------SSFSPDGSLLASGSSDGTIRL 267 (466)
T ss_pred cCCCCcce-e-------------------------------------------------EeECCCCCEEEEecCCCcEEE
Confidence 00010000 0 013444467889999999999
Q ss_pred EecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEecc
Q 001538 460 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 539 (1057)
Q Consensus 460 Wd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 539 (1057)
||...... .+..+ .+|...|.++.|.|++..+++++.|+.+.+|++........
T Consensus 268 ~~~~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---------------- 321 (466)
T COG2319 268 WDLRSSSS-LLRTL---------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS---------------- 321 (466)
T ss_pred eeecCCCc-EEEEE---------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE----------------
Confidence 99986652 11111 25667999999999999888899999999997765433110
Q ss_pred CCcceeeEEEeeCCCCeEEEEEcCCCCEEEEE-eCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCC
Q 001538 540 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVG-FECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKN 618 (1057)
Q Consensus 540 ~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G-~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~ 618 (1057)
.....|...|..+.|++++..++++ ..|+.+.+|++........... ...+..+.|.
T Consensus 322 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----------- 379 (466)
T COG2319 322 -------LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG----HSNVLSVSFS----------- 379 (466)
T ss_pred -------eeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC----CceEEEEEEC-----------
Confidence 0123577789999994343566666 6889999999987763333221 2227788886
Q ss_pred CCCCCCcCCCCCCCcEEE-EEecCCeEEEEeCCCcceeecC
Q 001538 619 PNHSEREVPVNPAEEVII-VLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 619 ~~~~~~~~~~~~d~~~L~-sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
+ ....+ .+..++.+.+|+......+...
T Consensus 380 -----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 380 -----------P-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred -----------C-CCCEEEEecCCCceEEEecccCeeeeec
Confidence 3 22233 3789999999999887776554
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.29 E-value=1.7e-09 Score=112.41 Aligned_cols=174 Identities=11% Similarity=0.148 Sum_probs=119.2
Q ss_pred EEEcCCCCCeeEEEEE--cCCc-EEEEEe----CCCcEEEEECC--CCceeeee--cCCCCEEEEEEecCCcEE---EEE
Q 001538 20 LLISPSQLPYKNLEFL--QNQG-FLISIT----NDNEIQVWSLE--SRSLACCL--KWESNITAFSVISGSHFM---YIG 85 (1057)
Q Consensus 20 ~~~~~~~~~v~~L~F~--~~~~-~Lvs~s----~d~~I~VWdl~--s~~~l~tl--~~~~~Ita~~~sp~~~~l---~vG 85 (1057)
+......-+..+|.|+ ++.+ +|+.++ ..|.|+|-.+. +++++..- .++-++|.+-|.|+.+-. +++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLA 117 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLA 117 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhh
Confidence 4444555678888888 2333 677766 35788886654 56655444 456789999999987522 123
Q ss_pred ccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCe---E
Q 001538 86 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---I 162 (1057)
Q Consensus 86 ~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~---~ 162 (1057)
+.+-.+++|..+.++.++. +-.+-+..+ -.....|+++..|+-. +.+++.+.+-|-+..|||+.++. +
T Consensus 118 Ts~D~LRlWri~~ee~~~~--~~~~L~~~k------ns~~~aPlTSFDWne~-dp~~igtSSiDTTCTiWdie~~~~~~v 188 (364)
T KOG0290|consen 118 TSSDFLRLWRIGDEESRVE--LQSVLNNNK------NSEFCAPLTSFDWNEV-DPNLIGTSSIDTTCTIWDIETGVSGTV 188 (364)
T ss_pred cccCeEEEEeccCcCCcee--hhhhhccCc------ccccCCcccccccccC-CcceeEeecccCeEEEEEEeeccccce
Confidence 4444579999987655443 111111111 1234679999999987 47788888999999999999873 2
Q ss_pred EEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcEEEEeCCCC
Q 001538 163 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG-~~latg~~DG~I~lWd~~~~ 232 (1057)
...+.. | .++|..++|. .+| .++|+.+.||+++++|+...
T Consensus 189 kTQLIA---------H--------------------DKEV~DIaf~-~~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 189 KTQLIA---------H--------------------DKEVYDIAFL-KGSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred eeEEEe---------c--------------------CcceeEEEec-cCccceEEEecCCCcEEEEEeccc
Confidence 333333 3 8899999999 665 57999999999999999653
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-09 Score=132.24 Aligned_cols=283 Identities=15% Similarity=0.174 Sum_probs=160.8
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCce
Q 001538 199 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR 278 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~ 278 (1057)
...|..++-+++.+.+++||+.||+|++|+...-.... ...+..+.+...+.++..+..+. .+.
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------~s~rS~ltys~~~sr~~~vt~~~--------~~~ 1111 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG--------GSARSELTYSPEGSRVEKVTMCG--------NGD 1111 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCc--------ceeeeeEEEeccCCceEEEEecc--------CCC
Confidence 66777888886777999999999999999997643211 12222222332344566664443 233
Q ss_pred EEEecCCCCCCcceEEEEEcCc-ccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCce-EEEEEcCCCeeEEeecc
Q 001538 279 LFVYGGDEIGSEEVLTVLSLEW-SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKA-DLFVLTSPGQLHFYDNA 356 (1057)
Q Consensus 279 Llv~gg~~~~~~~~ltvl~l~~-~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~-~lv~l~~~G~l~~~D~~ 356 (1057)
.++.+++| ..+.++.++- ......+.+.++..+...+.+++|...... ... .++..+..+.++.||..
T Consensus 1112 ~~Av~t~D----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~------~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1112 QFAVSTKD----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAI------VQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred eEEEEcCC----CeEEEEEccccccccceeeeeecccccCCCceEEeeccccc------ccceeEEEEEeccceEEecch
Confidence 45555665 4577777664 222333444555566667777777643322 222 56667888888888832
Q ss_pred chhhhhcccCCCCCCCCcccccccCCCCCcceEEEEEeccCCCCchhhhHHHHhhccccCCCCCCCCCcCCCCCCCCCCC
Q 001538 357 SLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPV 436 (1057)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~ 436 (1057)
... .+|. ... ++.-|.-.
T Consensus 1182 ~~~-------------------------------------------~~w~----lk~-------------~~~hG~vT-- 1199 (1431)
T KOG1240|consen 1182 MRH-------------------------------------------DAWR----LKN-------------QLRHGLVT-- 1199 (1431)
T ss_pred hhh-------------------------------------------hHHh----hhc-------------Ccccccee--
Confidence 110 1231 000 01111111
Q ss_pred CccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC---e-EEEEe-cCccEE
Q 001538 437 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS---S-LAVGN-EFGLVY 511 (1057)
Q Consensus 437 ~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~---~-Lavg~-~dG~V~ 511 (1057)
++ ..++.++++++|..-|.+-+||++-+. ++..+.. ++..+|..|..||-.+ . +.+|+ ..+.|.
T Consensus 1200 Si-~idp~~~WlviGts~G~l~lWDLRF~~--~i~sw~~--------P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1200 SI-VIDPWCNWLVIGTSRGQLVLWDLRFRV--PILSWEH--------PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred EE-EecCCceEEEEecCCceEEEEEeecCc--eeecccC--------cccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 11 367778899999999999999998776 3333321 3456899998887655 3 34444 578999
Q ss_pred EEEecCCCCccceeeeec-CCCceEEeccCCcceeeEE-EeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEE
Q 001538 512 IYNLNGSLDAKNFLFVLE-TKSEVHALPEGKISLCRAV-FSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 588 (1057)
Q Consensus 512 l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~g~~~~~~-~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l 588 (1057)
+|++.++..... +... ....+.. ++|... -+.+.-+....++..-+.++.+|+.|+.|+.||...+..-
T Consensus 1269 ~wn~~~g~~~~v--l~~s~~~p~ls~------~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1269 TWNMETGLRQTV--LWASDGAPILSY------ALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeecccCcceEE--EEcCCCCcchhh------hcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999987633211 1100 0000000 000000 0011112223334444459999999999999999877654
No 177
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.25 E-value=2.6e-10 Score=124.99 Aligned_cols=156 Identities=18% Similarity=0.194 Sum_probs=115.9
Q ss_pred ccCCC--CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEec
Q 001538 440 KCHSV--DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLN 516 (1057)
Q Consensus 440 ~~~~~--~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~ 516 (1057)
+++|. +++++.|..-|.|-+||+.+.+. ....+ +-...|..+|+++.|+|.+. .+.+.+.||++++-||.
T Consensus 193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----d~d~v--~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----DKDGV--YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred EecccCcceEEEEccCCCcEEEEecCCCCC-----ccCce--EEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 45554 35899999999999999964331 00000 11236888999999999665 67889999999999998
Q ss_pred CCCCccceeeeecCCCceEEeccCCcceeeEEEee--CCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeE-EEEeec
Q 001538 517 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL--VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV-LFFTDD 593 (1057)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~--h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~-l~~~~~ 593 (1057)
+..... ++.. -...+.++.|+.+.+-+..|..=|...|||++++.- ......
T Consensus 266 ~~i~e~-------------------------v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 266 GNISEE-------------------------VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred chhhHH-------------------------HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 754321 2222 344678889999888888888888999999987755 333333
Q ss_pred CCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 594 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 594 ~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
|...|++++++++. -.+|++++.|++++|||+..
T Consensus 321 ---h~kKI~sv~~NP~~---------------------p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 321 ---HKKKITSVALNPVC---------------------PWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred ---hhcccceeecCCCC---------------------chheeecccCcceeeeehhh
Confidence 88899999998543 35799999999999999865
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=2.2e-09 Score=108.92 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=113.6
Q ss_pred EEEEcCCcEEEEEeCCCcEEEEECCCC---------c-eeee-ecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCC
Q 001538 32 LEFLQNQGFLISITNDNEIQVWSLESR---------S-LACC-LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 100 (1057)
Q Consensus 32 L~F~~~~~~Lvs~s~d~~I~VWdl~s~---------~-~l~t-l~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~ 100 (1057)
-+++|-++||++++.+|+|-|.++.+- + .+-+ -.++++|..+++. .++|++| .||.|+-|.|....
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gdG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GDGLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-cCceEEEeeehhhh
Confidence 356788889999999999999998651 1 1222 2367899999886 4555555 45999999986532
Q ss_pred Cce-eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccC
Q 001538 101 GKL-FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 179 (1057)
Q Consensus 101 ~~l-~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (1057)
..+ .+.-+.+.+.+... ......|.++...|. .+. ++.++.||.+.-||+.+|++.+.+.+ |
T Consensus 93 es~~~K~lwe~~~P~~~~-----~~evPeINam~ldP~-enS-i~~AgGD~~~y~~dlE~G~i~r~~rG---------H- 155 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVD-----AVEVPEINAMWLDPS-ENS-ILFAGGDGVIYQVDLEDGRIQREYRG---------H- 155 (325)
T ss_pred hhccchhhhhhcCccccC-----cccCCccceeEeccC-CCc-EEEecCCeEEEEEEecCCEEEEEEcC---------C-
Confidence 211 00001111110000 112345889999996 465 77788999999999999999999887 4
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 180 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 180 ~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
+..|.++.-. .....|++|++||++++||..++.
T Consensus 156 -------------------tDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 156 -------------------TDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQK 189 (325)
T ss_pred -------------------cceeeeeeec-ccCcceeecCCCccEEEEeccccc
Confidence 7788899875 334569999999999999999874
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.25 E-value=1.1e-10 Score=125.65 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=121.0
Q ss_pred cCCCCCEEEEEEecCC-CeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEE
Q 001538 483 AGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 561 (1057)
Q Consensus 483 ~~~~~~V~~v~fspd~-~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~ 561 (1057)
.||..+|..++|||-+ ..+|+|++|.+|.||++..+..... -..|+..+.+|...|--++|
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------ltepvv~L~gH~rrVg~V~w 139 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------LTEPVVELYGHQRRVGLVQW 139 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------cccceEEEeecceeEEEEee
Confidence 4899999999999954 5789999999999999976644321 12567788999999999999
Q ss_pred cCC-CCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEec
Q 001538 562 TSS-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK 640 (1057)
Q Consensus 562 S~~-g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~ 640 (1057)
.|. -+.|++++.|.+|.+||+.++..+.++. |..-|.++.|+ .||.+|++..+
T Consensus 140 HPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn----------------------~dGs~l~Ttck 193 (472)
T KOG0303|consen 140 HPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFN----------------------RDGSLLCTTCK 193 (472)
T ss_pred cccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEec----------------------cCCceeeeecc
Confidence 995 4579999999999999999999887753 89999999998 88999999999
Q ss_pred CCeEEEEeCCCcceeecCccc-cCCcceeEEEE
Q 001538 641 DAKISIVGGSSENMISSSPWH-LKKKVIAISME 672 (1057)
Q Consensus 641 dg~i~v~d~~tg~~i~~~~i~-p~~~~~~~~~~ 672 (1057)
|..|+|||..+|+++....-| -.++.+++++.
T Consensus 194 DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 194 DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred cceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999876311 12345666654
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=2.6e-10 Score=121.02 Aligned_cols=187 Identities=14% Similarity=0.222 Sum_probs=130.0
Q ss_pred ccccCCcEEEEcCCCeEEEEEc-CCCCCeeEEEEEcC--CcEEEEEeCCCcEEEEECCCCceeeeecCC----CCEEEEE
Q 001538 2 CLCRDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQN--QGFLISITNDNEIQVWSLESRSLACCLKWE----SNITAFS 74 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~~~~-~~~~~v~~L~F~~~--~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~----~~Ita~~ 74 (1057)
|+-..|.||+|.......+-.. -....+..++|+.. .--+.+++.||+|++||+++......+.+. ....|++
T Consensus 45 v~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 45 VSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD 124 (376)
T ss_pred EEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence 4557899999987764433222 12345778888873 235888999999999999987766555443 3556666
Q ss_pred EecCCcEEEEEccC--CcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEE
Q 001538 75 VISGSHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALV 152 (1057)
Q Consensus 75 ~sp~~~~l~vG~~~--G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I 152 (1057)
.--....++.|++- -...|..||....+- + +.. ....|...|++|.|||.| .+.||+|+.||.|
T Consensus 125 ~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq---~--l~~--------~~eSH~DDVT~lrFHP~~-pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 125 LNCKKNIIACGTELTRSDASVVLWDVRSEQQ---L--LRQ--------LNESHNDDVTQLRFHPSD-PNLLLSGSVDGLV 190 (376)
T ss_pred ccCcCCeEEeccccccCceEEEEEEeccccc---h--hhh--------hhhhccCcceeEEecCCC-CCeEEeecccceE
Confidence 65567788888753 233555555532110 1 110 123477889999999984 7789999999999
Q ss_pred EEEEccCCe----EEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcEEEE
Q 001538 153 ILWDVSEAQ----IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLW 227 (1057)
Q Consensus 153 ~lWdl~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG-~~latg~~DG~I~lW 227 (1057)
.|||+.... +++++-+ ...|.++.|+ .++ ..|.+-+.+++..+|
T Consensus 191 nlfD~~~d~EeDaL~~viN~------------------------------~sSI~~igw~-~~~ykrI~clTH~Etf~~~ 239 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINH------------------------------GSSIHLIGWL-SKKYKRIMCLTHMETFAIY 239 (376)
T ss_pred EeeecCCCcchhhHHHhhcc------------------------------cceeeeeeee-cCCcceEEEEEccCceeEE
Confidence 999997542 2222222 5679999999 666 568888889999999
Q ss_pred eCCCCC
Q 001538 228 NTSTTA 233 (1057)
Q Consensus 228 d~~~~~ 233 (1057)
+++.+.
T Consensus 240 ele~~~ 245 (376)
T KOG1188|consen 240 ELEDGS 245 (376)
T ss_pred EccCCC
Confidence 999886
No 181
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.23 E-value=1.5e-10 Score=127.39 Aligned_cols=204 Identities=10% Similarity=0.189 Sum_probs=156.3
Q ss_pred ccccCCcEEEEcCCCeEEE-EEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCE-EEEEEecC
Q 001538 2 CLCRDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNI-TAFSVISG 78 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~-~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~I-ta~~~sp~ 78 (1057)
.|...|.|+||+-....+. +.-.++..|+++.|.-...||++++..|.|.|-++.++.-..++..+ +.. .-+.+++.
T Consensus 96 sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS 175 (673)
T ss_pred ccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence 3567899999986532221 22345688999999999999999999999999999999988888765 444 47889988
Q ss_pred CcE-EEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEc
Q 001538 79 SHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 157 (1057)
Q Consensus 79 ~~~-l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl 157 (1057)
.++ |.+++.+|.|.+|+..... ||. . +...|..|...|+|+|. ...++++.+-|..|.+||.
T Consensus 176 kr~lL~~asd~G~VtlwDv~g~s------p~~-~---------~~~~HsAP~~gicfsps-ne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQGMS------PIF-H---------ASEAHSAPCRGICFSPS-NEALLVSVGYDKKINIYDI 238 (673)
T ss_pred cceeeEeeccCCeEEEEeccCCC------ccc-c---------hhhhccCCcCcceecCC-ccceEEEecccceEEEeec
Confidence 776 4568889988888754311 221 1 22346778999999997 4567888889999999999
Q ss_pred cCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCC
Q 001538 158 SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKG 237 (1057)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~ 237 (1057)
...+...++.| ..+.++++|. ++|.+|+.|...|.|.+||+.....
T Consensus 239 ~s~~s~~~l~y------------------------------~~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~~k~--- 284 (673)
T KOG4378|consen 239 RSQASTDRLTY------------------------------SHPLSTVAFS-ECGTYLCAGNSKGELIAYDMRSTKA--- 284 (673)
T ss_pred ccccccceeee------------------------------cCCcceeeec-CCceEEEeecCCceEEEEecccCCC---
Confidence 98888777777 6688999999 9999999999999999999976532
Q ss_pred CCCCCCCcceeeecccccCCccEEEEEeec
Q 001538 238 QQTGSRNNVVKLELSSAERRLPVIVLHWST 267 (1057)
Q Consensus 238 ~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~ 267 (1057)
|+.-+ ..|...|.+++|.+
T Consensus 285 -------Pv~v~----sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 285 -------PVAVR----SAHDASVTRVAFQP 303 (673)
T ss_pred -------CceEe----eecccceeEEEeee
Confidence 33221 11455688888875
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.8e-10 Score=125.70 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=123.0
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
++..++..++||+.||++|+|+...... + + +...|...|.++.|+|||+.|++-+.| ..+||+.....
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~t--~--l-------~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSMLT--I--L-------EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcchh--h--h-------hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 6888999999999999999999543321 1 1 122566799999999999999999999 89999987651
Q ss_pred Ccc------------ceeeeecC-CCceE--------------Eecc--CCcceeeEEEeeCCCCeEEEEEcCCCCEEEE
Q 001538 520 DAK------------NFLFVLET-KSEVH--------------ALPE--GKISLCRAVFSLVNSPVRALQFTSSGAKLAV 570 (1057)
Q Consensus 520 ~~~------------~~~~~~~~-~~~~~--------------~i~~--~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~ 570 (1057)
... .+-|.... ...++ ++.. ...+.+..........|++|+.|++|+++|.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 110 11111111 11111 1111 1112111122223458999999999999999
Q ss_pred EeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 571 GFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 571 G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
|+.||.|.|++....+.++... ..|...||.|+|+ ||.+++++.+.|.++.+.-+
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~----------------------Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFS----------------------PDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh--hhheeeeeeEEEc----------------------CCcCcccccccCCceeEEEE
Confidence 9999999999999887776543 3489999999999 88999999888887777643
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=1.3e-10 Score=130.52 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=94.9
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCC------CceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEE
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATY------PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIY 513 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~------~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~ 513 (1057)
++++....++||+.||++++|++.. ..+.++++ +.+|.++|-|+++.+++..+.+|+.||+|+.|
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~t---------fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILT---------FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEE---------EecccCceEEEEecCCceEEEeeccCceeeee
Confidence 5778888999999999999999832 12334433 45899999999999999999999999999999
Q ss_pred EecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCC
Q 001538 514 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 585 (1057)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~ 585 (1057)
++..+...- ..++... ....+.+|...|+.|++|+.-.+|++++.||+|++|+....
T Consensus 372 ~~p~n~dp~----------ds~dp~v-----l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 372 NLPPNQDPD----------DSYDPSV-----LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred ccCCCCCcc----------cccCcch-----hccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 987432210 0111110 01256799999999999999889999999999999998544
No 184
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.19 E-value=7.1e-09 Score=112.51 Aligned_cols=166 Identities=14% Similarity=0.219 Sum_probs=127.6
Q ss_pred CCCCeeEEEEEcCCc-EEEEEeCCCcEEEEECCCCce---------eeee-cCCCCEEEEEEecCCcEEEEEccCCcEEE
Q 001538 25 SQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRSL---------ACCL-KWESNITAFSVISGSHFMYIGDENGLMSV 93 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~-~Lvs~s~d~~I~VWdl~s~~~---------l~tl-~~~~~Ita~~~sp~~~~l~vG~~~G~v~v 93 (1057)
...||..+.|-++.. +|++++.|..|++|-+..... +.++ .++..|+++-|+|+++.+++|..+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 567899999999887 999999999999999865332 2333 35679999999999999999999999999
Q ss_pred EEEeCCC-----Cceecc-C-cccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEe
Q 001538 94 IKYDADE-----GKLFQL-P-YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 166 (1057)
Q Consensus 94 ~~~d~~~-----~~l~~~-~-~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~ 166 (1057)
|+-...+ .+..+- + |.+. . ....|...|.-++|+| ++..+.+++-|..+++||+..|.++..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~------k--~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVK------K--VLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred EEecCcCCccccchhhhCccceEEE------E--EecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEeec
Confidence 9864110 011000 0 1111 0 1234678899999999 5778999999999999999999999877
Q ss_pred cCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 167 GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
.. | ...|.-++|. |-+.+|++=+.|...+..++.
T Consensus 162 ~d---------h--------------------~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 162 DD---------H--------------------EHYVQGVAWD-PLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cc---------c--------------------ccccceeecc-hhhhhhhhhccCcccceeeee
Confidence 65 2 6678899999 999999999999866555553
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.19 E-value=5.6e-09 Score=108.47 Aligned_cols=126 Identities=23% Similarity=0.236 Sum_probs=84.5
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecCCCCccc
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~~~~~ 523 (1057)
..+|+||+.||.|||||.+.... +++ ++.+|..-|.+|.|.|.-. ++.+|+.|..|.+|-...-+....
T Consensus 227 q~~lvt~gDdgyvriWD~R~tk~--------pv~--el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q 296 (370)
T KOG1007|consen 227 QHILVTCGDDGYVRIWDTRKTKF--------PVQ--ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ 296 (370)
T ss_pred eEEEEEcCCCccEEEEeccCCCc--------ccc--ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence 34789999999999999987652 221 3568999999999998654 567899999999997754332221
Q ss_pred eeeee-cCCCceEEe-----ccCCcceeeEEEeeCCCCeEEEEEcCCCCE-EEEEeCCceEEEEeC
Q 001538 524 FLFVL-ETKSEVHAL-----PEGKISLCRAVFSLVNSPVRALQFTSSGAK-LAVGFECGRVAVLDM 582 (1057)
Q Consensus 524 ~~~~~-~~~~~~~~i-----~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~-lA~G~~dG~V~vwDi 582 (1057)
..+-. +++.+..+. ...+|. +..+..|...|.+++||....+ +|+=+-||+|.|=.+
T Consensus 297 i~~~~dese~e~~dseer~kpL~dg~--l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 297 IEFEDDESESEDEDSEERVKPLQDGQ--LETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccccccCcchhhHHhcccccccc--cccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 11111 111111110 012222 2356679999999999997766 688899998876554
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.19 E-value=1.9e-09 Score=115.71 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=115.6
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEE--ecCccEEEEEecCCCCccce
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVG--NEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg--~~dG~V~l~~~~~~~~~~~~ 524 (1057)
.|+..-++ .|.|+|+.+.. +|+++.. ...+...+.+++++.++.+||.- ...|.|+|||...-
T Consensus 99 RLvV~Lee-~IyIydI~~Mk--lLhTI~t------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl------ 163 (391)
T KOG2110|consen 99 RLVVCLEE-SIYIYDIKDMK--LLHTIET------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL------ 163 (391)
T ss_pred eEEEEEcc-cEEEEecccce--eehhhhc------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc------
Confidence 44544444 49999998766 5555542 12344568888888888898874 34699999997542
Q ss_pred eeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCce-EEEEeCCCCeEEEEeecCCC-CCCCeE
Q 001538 525 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR-VAVLDMNLLSVLFFTDDISG-SSSPII 602 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~-V~vwDi~~~~~l~~~~~~~g-~~~~V~ 602 (1057)
++...+..|++++-||+|+++|.+||++++.|+ |+|+++.++..++.++. | ....|.
T Consensus 164 -------------------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR--G~~~~~Iy 222 (391)
T KOG2110|consen 164 -------------------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR--GTYPVSIY 222 (391)
T ss_pred -------------------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC--CceeeEEE
Confidence 234577899999999999999999999999998 68999999999988754 3 345688
Q ss_pred EEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 603 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 603 sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
+|+|+ +|+++|.+.++-++|.++-+++
T Consensus 223 SL~Fs----------------------~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 223 SLSFS----------------------PDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEC----------------------CCCCeEEEecCCCeEEEEEecc
Confidence 99998 8999999999999999998765
No 187
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=4.7e-08 Score=103.40 Aligned_cols=120 Identities=19% Similarity=0.220 Sum_probs=74.0
Q ss_pred cEEEEEeCCCc-EEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccce
Q 001538 446 RVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 446 ~~liTG~~DGt-VriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
.+++|++..|| |||||..++++ +..+.- .-....|.+|+|+|++.+||+++.-|+|+||.+.........
T Consensus 194 t~vATaStkGTLIRIFdt~~g~~--l~E~RR-------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~ 264 (346)
T KOG2111|consen 194 TLVATASTKGTLIRIFDTEDGTL--LQELRR-------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDE 264 (346)
T ss_pred cEEEEeccCcEEEEEEEcCCCcE--eeeeec-------CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccc
Confidence 47999999999 89999999883 322221 123358999999999999999999999999999764432110
Q ss_pred eeeecCCCceEEecc-CCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCce
Q 001538 525 LFVLETKSEVHALPE-GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR 576 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~-~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~ 576 (1057)
. .+.+...+ .+.. -+.--....++...++..-++|-.+-..++.-+.||+
T Consensus 265 ~-SSl~~~~~-~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgs 315 (346)
T KOG2111|consen 265 S-SSLSFKRL-VLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGS 315 (346)
T ss_pred c-cccccccc-ccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCc
Confidence 0 00000000 0000 0000112345555666677777766555666666674
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.6e-09 Score=115.10 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=111.0
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCC-CCEEEEEEecCCCeEEEEec----CccEEEEEecCCC
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR-APVSTLSFCFINSSLAVGNE----FGLVYIYNLNGSL 519 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~-~~V~~v~fspd~~~Lavg~~----dG~V~l~~~~~~~ 519 (1057)
+..+++|+.||+||+||++....... +....++ .+-.+++..-..+.++.|.+ +-.|.+||++..+
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~---------~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAESAR---------ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhhhh---------eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence 44789999999999999987642111 1111222 35566666556778888854 5679999998765
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC-CCEEEEEeCCceEEEEeCCCC----eEEEEeecC
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLL----SVLFFTDDI 594 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~-g~~lA~G~~dG~V~vwDi~~~----~~l~~~~~~ 594 (1057)
.... .....|...||+|+|.|+ -.+|++|+.||.|.|+|+... .++..++
T Consensus 155 q~l~-----------------------~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-- 209 (376)
T KOG1188|consen 155 QLLR-----------------------QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-- 209 (376)
T ss_pred chhh-----------------------hhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc--
Confidence 4211 134579999999999994 579999999999999999754 2232222
Q ss_pred CCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceee
Q 001538 595 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 656 (1057)
Q Consensus 595 ~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~ 656 (1057)
|.+.|-++.|... +| +.|.|.|..++..+|+.+.|....
T Consensus 210 --~~sSI~~igw~~~-------------------~y--krI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 210 --HGSSIHLIGWLSK-------------------KY--KRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred --ccceeeeeeeecC-------------------Cc--ceEEEEEccCceeEEEccCCChhh
Confidence 5677999999822 22 248999999999999999877443
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.13 E-value=6.9e-08 Score=110.24 Aligned_cols=188 Identities=11% Similarity=0.115 Sum_probs=122.9
Q ss_pred ccCCcEEEEcCC---CeEEEEEcCCCCCeeEEEEEcCCcEEEEEe-CCCcEEEEECC-CCce--eeeecCCCCEEEEEEe
Q 001538 4 CRDGRIKVIGGD---GIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLE-SRSL--ACCLKWESNITAFSVI 76 (1057)
Q Consensus 4 t~dG~I~v~g~~---~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s-~d~~I~VWdl~-s~~~--l~tl~~~~~Ita~~~s 76 (1057)
..+|.|.+|..+ ..+.+-..+.......|+|+|++.+|++++ .++.|.+|++. ++++ +......+....++++
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~ 88 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTD 88 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEEC
Confidence 568999999863 233444444445577899999999887665 57999999997 3443 3333444567889999
Q ss_pred cCCcEEEEEcc-CCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE-CCCEEEE
Q 001538 77 SGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVIL 154 (1057)
Q Consensus 77 p~~~~l~vG~~-~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~-~dG~I~l 154 (1057)
|+++++|++.. +|.|.+|.++.+ +.+.. .+.. ........+++++| +|++++++. .++.|.+
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~~-g~~~~---~~~~----------~~~~~~~~~~~~~p--~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDKD-GIPVA---PIQI----------IEGLEGCHSANIDP--DNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECCC-CCCCC---ceee----------ccCCCcccEeEeCC--CCCEEEEeeCCCCEEEE
Confidence 99999998874 777888877643 22210 0000 00112456788999 687776554 5699999
Q ss_pred EEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc-CCcEEEEeCCC
Q 001538 155 WDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTST 231 (1057)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~-DG~I~lWd~~~ 231 (1057)
||+.+...+........+ ++ . ......+.|+ |||++++++.. +++|.+|++..
T Consensus 153 ~d~~~~g~l~~~~~~~~~----~~---~----------------g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVT----TV---E----------------GAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEECCCCcccccCCCcee----cC---C----------------CCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeC
Confidence 999764322110000000 00 0 1234578999 99999988877 89999999974
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.12 E-value=3.6e-10 Score=122.41 Aligned_cols=171 Identities=15% Similarity=0.169 Sum_probs=124.1
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeeccccee-eeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQ-GIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~-~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
.++||+.|..||||-+.......- ...|. .-.|..|..+|++|.|+|+|..||+|+.+|.|.+|+.......
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~---~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---- 100 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGG---DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---- 100 (434)
T ss_pred ceecccCccceeeeeeeecCCCCC---ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc----
Confidence 899999999999998765431100 00111 1236689999999999999999999999999999987632110
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMT 605 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~ 605 (1057)
-.+++.+.. ++-+.-..++.+|...|..|+|+|++.++++|+-|..+++||+..+.++.... +|...|.-++
T Consensus 101 -~~d~e~~~~----ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgva 172 (434)
T KOG1009|consen 101 -DADTEADLN----KEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVA 172 (434)
T ss_pred -cccchhhhC----ccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc---ccccccceee
Confidence 000100000 11112234677899999999999999999999999999999999999886654 5999999999
Q ss_pred EeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcce
Q 001538 606 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 654 (1057)
Q Consensus 606 f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~ 654 (1057)
|. |-.+++++-+.|.....++...-.+
T Consensus 173 wD----------------------pl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 173 WD----------------------PLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred cc----------------------hhhhhhhhhccCcccceeeeeeeee
Confidence 98 6677788888887666665544333
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=7.8e-10 Score=124.37 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=54.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 517 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~ 517 (1057)
-++...+.+++|.|++||++|...+.+ ++.. ..|..+|+++++.|+|.+|++|+.||.|++|++..
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~--l~s~---------~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKI--LHSM---------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ecCCCCeeEecccCCceeccccccccc--chhe---------eeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 355667899999999999999988762 2211 14556899999999999999999999999999854
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.11 E-value=1.7e-08 Score=119.33 Aligned_cols=150 Identities=14% Similarity=0.172 Sum_probs=98.5
Q ss_pred CcEEEEECCCC-ceeeeecCCCCEEEEEEecC-CcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCC
Q 001538 48 NEIQVWSLESR-SLACCLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 125 (1057)
Q Consensus 48 ~~I~VWdl~s~-~~l~tl~~~~~Ita~~~sp~-~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~ 125 (1057)
+.+.|||+... ..-..+..+..|+|+.+.|. ...++.|+.+|.|-+|++.....++. ..+. -....|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---s~ls--------~~~~sh 290 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---SGLS--------ALEVSH 290 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---cccc--------cccccC
Confidence 47899999887 55666778899999999986 55788899999777776543322111 1111 012457
Q ss_pred CCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE-EEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEE
Q 001538 126 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 204 (1057)
Q Consensus 126 ~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vts 204 (1057)
..+|+.+.|.....++.+++++.||.|..|+++--.. ...... +... | ....-.....+++
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~-~~~~----~-------------~~~~~~~~~~~t~ 352 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL-ESKK----H-------------KGQQSSKAVGATS 352 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc-cccc----c-------------cccccccccceee
Confidence 8899999996644455699999999999997753322 111000 0000 0 0000012567899
Q ss_pred EEEecCCCCEEEEEEcCCcEEE
Q 001538 205 LCWASSSGSILAVGYIDGDILL 226 (1057)
Q Consensus 205 l~ws~pdG~~latg~~DG~I~l 226 (1057)
+.|...+-.++++|.++|.|.-
T Consensus 353 ~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 353 LKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EeeccCCCceEEEEcCCcEEEE
Confidence 9999566788999999999876
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.10 E-value=3.1e-08 Score=103.07 Aligned_cols=183 Identities=14% Similarity=0.233 Sum_probs=107.2
Q ss_pred EEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCc--eeee-ec-CCCCEEEEEEecCCcEEEEEc
Q 001538 11 VIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACC-LK-WESNITAFSVISGSHFMYIGD 86 (1057)
Q Consensus 11 v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~--~l~t-l~-~~~~Ita~~~sp~~~~l~vG~ 86 (1057)
+||.+ .|..+..|..+.-.+++|.-+.. +.-.||.|.+..++... +... +. ..+.|+.++-+|....++...
T Consensus 7 iyGle-~qAR~lT~qtad~d~icFlvgTn---slK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~ 82 (370)
T KOG1007|consen 7 IYGLE-YQARCLTPQTADRDHICFLVGTN---SLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATV 82 (370)
T ss_pred eeeee-eeeeecCccccCccceEEEEecc---ccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEE
Confidence 45543 34444466666666777754331 22367999998887643 3332 22 348999999999776655432
Q ss_pred cC--------CcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEcc
Q 001538 87 EN--------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 158 (1057)
Q Consensus 87 ~~--------G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~ 158 (1057)
-+ -.+.||.+..+-+.- .|. ++.+ ...++..+.+.|.||.|.| ++..++. -.+..|.+|++.
T Consensus 83 yn~~s~s~vl~~aaiw~ipe~~~~S---~~~-tlE~---v~~Ldteavg~i~cvew~P--ns~klas-m~dn~i~l~~l~ 152 (370)
T KOG1007|consen 83 YNDTSDSGVLTGAAIWQIPEPLGQS---NSS-TLEC---VASLDTEAVGKINCVEWEP--NSDKLAS-MDDNNIVLWSLD 152 (370)
T ss_pred EeccCCCcceeeEEEEecccccCcc---ccc-hhhH---hhcCCHHHhCceeeEEEcC--CCCeeEE-eccCceEEEEcc
Confidence 22 123566654332220 010 0000 1112334456899999999 5664544 457777899998
Q ss_pred CCeE-EEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEec-CCCCEEEEEEcCCcEEEEeCCCC
Q 001538 159 EAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS-SSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~-pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
++.- +..... +... ......++-.|++ .||+.+++. .|+++.+||+.+.
T Consensus 153 ess~~vaev~s-------------s~s~-----------e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 153 ESSKIVAEVLS-------------SESA-----------EMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred cCcchheeecc-------------cccc-----------cccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence 8755 322211 0000 1256788999983 489988887 5899999999864
No 194
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.10 E-value=6.1e-08 Score=111.37 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=120.7
Q ss_pred cccCCcEEEEcCCCeEEEEEcCCCCCe-eEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcE
Q 001538 3 LCRDGRIKVIGGDGIEGLLISPSQLPY-KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHF 81 (1057)
Q Consensus 3 gt~dG~I~v~g~~~~e~~~~~~~~~~v-~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~ 81 (1057)
-..+|+|.|+.....+++-..+....+ -.+.|++|++||..++.|+.|.++|+.+++++.+++....-..++++++++|
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKY 91 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTE
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCE
Confidence 346899999999887777777664444 4578999999999999999999999999999999988777889999999999
Q ss_pred EEEEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEE-EECCCEEEEEEccC
Q 001538 82 MYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI-AYENALVILWDVSE 159 (1057)
Q Consensus 82 l~vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli-~~~dG~I~lWdl~~ 159 (1057)
++++. ..+.+ ..+|....++. ..|+.... ......+.|.+|-.+|. ...+++ .-+.+.|-+-|...
T Consensus 92 ~~v~n~~~~~v--~v~D~~tle~v---~~I~~~~~-----~~~~~~~Rv~aIv~s~~--~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 92 VYVANYEPGTV--SVIDAETLEPV---KTIPTGGM-----PVDGPESRVAAIVASPG--RPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEEETTEE--EEEETTT--EE---EEEE--EE------TTTS---EEEEEE-SS--SSEEEEEETTTTEEEEEETTT
T ss_pred EEEEecCCCce--eEeccccccce---eecccccc-----cccccCCCceeEEecCC--CCEEEEEEccCCeEEEEEecc
Confidence 99987 46744 44566665554 34432110 00113456888888773 443444 44558887778765
Q ss_pred CeEEE-EecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEE-EcCCcEEEEeCCCC
Q 001538 160 AQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTSTT 232 (1057)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg-~~DG~I~lWd~~~~ 232 (1057)
.+... .+.. .........|. |+|++++++ ..++.|.++|..++
T Consensus 160 ~~~~~~~~i~-----------------------------~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 160 PKNLKVTTIK-----------------------------VGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp SSCEEEEEEE-------------------------------TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred ccccceeeec-----------------------------ccccccccccC-cccceeeecccccceeEEEeeccc
Confidence 53222 1111 03345678899 999987664 56788999998654
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.07 E-value=1.2e-08 Score=106.20 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=111.6
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecCCCCc
Q 001538 443 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDA 521 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~~~ 521 (1057)
-+.++|.|.+-|-|..|||+..+.. ..++++. -.|...|..|+|...+. .+|+.+.||.||+||++.-...
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~---~~vkTQL-----IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVS---GTVKTQL-----IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccc---cceeeEE-----EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 4567899999999999999988631 2223222 26778999999998665 6799999999999999865432
Q ss_pred cceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC-CCEEEEEeC-CceEEEEeCCCCeE-EEEeecCCCCC
Q 001538 522 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFE-CGRVAVLDMNLLSV-LFFTDDISGSS 598 (1057)
Q Consensus 522 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~-g~~lA~G~~-dG~V~vwDi~~~~~-l~~~~~~~g~~ 598 (1057)
.- ++. +. ....+...|++++. -+++|+--. ...|.+.|++-+.. +.. +.+|.
T Consensus 233 TI----------IYE-----~p-------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~---L~~H~ 287 (364)
T KOG0290|consen 233 TI----------IYE-----DP-------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR---LRNHQ 287 (364)
T ss_pred eE----------Eec-----CC-------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh---hhcCc
Confidence 10 110 00 12456777888874 456776443 34599999998744 333 34699
Q ss_pred CCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 599 SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 599 ~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
+.|..++|.++ .+..|.+++.|..+.+||+.+
T Consensus 288 a~VNgIaWaPh---------------------S~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 288 ASVNGIAWAPH---------------------SSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ccccceEecCC---------------------CCceeeecCCcceEEEEeccc
Confidence 99999999843 356799999999999999864
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.06 E-value=9.9e-09 Score=114.67 Aligned_cols=139 Identities=10% Similarity=0.077 Sum_probs=102.1
Q ss_pred CCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCC
Q 001538 487 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 566 (1057)
Q Consensus 487 ~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~ 566 (1057)
.+|...+|+||+++||+.++||.+|||+|......+ +.+.--+...|++|||||+
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg-------------------------~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG-------------------------VMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHHHHH-------------------------HHHhhccceEEEEEcCCcc
Confidence 389999999999999999999999999997754321 1222346789999999999
Q ss_pred EEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccc---------cCC-------CCCCCCcCCCC-
Q 001538 567 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSL---------AKN-------PNHSEREVPVN- 629 (1057)
Q Consensus 567 ~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~---------~~~-------~~~~~~~~~~~- 629 (1057)
++|+|++|--|.||.+...+++...+. |.+-|..++|+++-....- .++ ++-...-+.++
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqG---HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~ 422 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQG---HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGC 422 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccc---cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCC
Confidence 999999999999999999999987764 9999999999964332110 000 00000001111
Q ss_pred ---------CCCcEEEEEecCCeEEEEeCCCcc
Q 001538 630 ---------PAEEVIIVLFKDAKISIVGGSSEN 653 (1057)
Q Consensus 630 ---------~d~~~L~sgt~dg~i~v~d~~tg~ 653 (1057)
...-.+-+.+.|-.+++||+.--.
T Consensus 423 ~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 423 PLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred cccccccccceEEEeecccccceEEEEecchhh
Confidence 023357889999999999986533
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.06 E-value=6.2e-09 Score=115.82 Aligned_cols=88 Identities=15% Similarity=0.208 Sum_probs=66.9
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccce
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
.++|+||++|-..++||.....+ + +.+.|..+|++|+|.|| ..+++|+.+ +.| |.+
T Consensus 198 s~lI~sgGED~kfKvWD~~G~~L---f---------~S~~~ey~ITSva~npd-~~~~v~S~n-t~R---~~~------- 253 (737)
T KOG1524|consen 198 SNIIASGGEDFRFKIWDAQGANL---F---------TSAAEEYAITSVAFNPE-KDYLLWSYN-TAR---FSS------- 253 (737)
T ss_pred ccceeecCCceeEEeecccCccc---c---------cCChhccceeeeeeccc-cceeeeeee-eee---ecC-------
Confidence 34899999999999999876542 2 12357789999999999 666777653 333 211
Q ss_pred eeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeC
Q 001538 525 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 582 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi 582 (1057)
...+.|-.|+||+||..+|+|...|.|.+=.+
T Consensus 254 --------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 254 --------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred --------------------------CCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 24577899999999999999999998876554
No 198
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.05 E-value=9.3e-08 Score=101.08 Aligned_cols=109 Identities=16% Similarity=0.288 Sum_probs=75.8
Q ss_pred EEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCe-EEEEECCCE
Q 001538 73 FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR-VLIAYENAL 151 (1057)
Q Consensus 73 ~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~-lli~~~dG~ 151 (1057)
.+|+|+|+|+++.... ++..-|....++.+. |.. ...|.-|.|..+ .-+ |-.+|-++.
T Consensus 14 c~fSp~g~yiAs~~~y---rlviRd~~tlq~~ql-f~c---------------ldki~yieW~ad--s~~ilC~~yk~~~ 72 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY---RLVIRDSETLQLHQL-FLC---------------LDKIVYIEWKAD--SCHILCVAYKDPK 72 (447)
T ss_pred eeECCCCCeeeeeeee---EEEEeccchhhHHHH-HHH---------------HHHhhheeeecc--ceeeeeeeeccce
Confidence 5689999999988766 455555544333210 110 134788889873 334 445688999
Q ss_pred EEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEE-EcCCcEEEEeCC
Q 001538 152 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTS 230 (1057)
Q Consensus 152 I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg-~~DG~I~lWd~~ 230 (1057)
|.+|++..-+-...... ....+.+++|+ |||++|+.. .-|-.|.+|++.
T Consensus 73 vqvwsl~Qpew~ckIde-----------------------------g~agls~~~WS-PdgrhiL~tseF~lriTVWSL~ 122 (447)
T KOG4497|consen 73 VQVWSLVQPEWYCKIDE-----------------------------GQAGLSSISWS-PDGRHILLTSEFDLRITVWSLN 122 (447)
T ss_pred EEEEEeecceeEEEecc-----------------------------CCCcceeeeEC-CCcceEeeeecceeEEEEEEec
Confidence 99999987776655442 15688999999 999876655 458899999997
Q ss_pred CC
Q 001538 231 TT 232 (1057)
Q Consensus 231 ~~ 232 (1057)
+.
T Consensus 123 t~ 124 (447)
T KOG4497|consen 123 TQ 124 (447)
T ss_pred cc
Confidence 64
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=3.3e-08 Score=106.08 Aligned_cols=125 Identities=12% Similarity=0.078 Sum_probs=97.5
Q ss_pred CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCC-CCCCCCeEEEEeCcCCCCCeEEE
Q 001538 67 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP-LLSHQPVVGVLPHPNSSGNRVLI 145 (1057)
Q Consensus 67 ~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~-~~~~~~V~sI~~sP~d~g~~lli 145 (1057)
-+-|.++.|+..+.||+.|..|-.++||+++.. . -.+++ +.+++- .+|.+.|.|++|.. ..+.|.+
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~----~--~~k~~-----KPI~~~~~~H~SNIF~L~F~~--~N~~~~S 122 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDEL----M--VRKTP-----KPIGVMEHPHRSNIFSLEFDL--ENRFLYS 122 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHH----H--hhcCC-----CCceeccCccccceEEEEEcc--CCeeEec
Confidence 377999999999999999999998899987642 1 12222 122222 23458899999998 4667889
Q ss_pred EECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEE
Q 001538 146 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 225 (1057)
Q Consensus 146 ~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~ 225 (1057)
|..+|+|++.|+.+.+.+.++... ...+.|..+.-| |-.+.+++.+.||.|.
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~---------------------------~~~~~VY~m~~~-P~DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANEN---------------------------NNRGDVYHMDQH-PTDNTLIVVTRAKLVS 174 (609)
T ss_pred CCCcceeEeeecccceeeeeeccc---------------------------CcccceeecccC-CCCceEEEEecCceEE
Confidence 999999999999999888776541 115678888899 8888999999999999
Q ss_pred EEeCCCC
Q 001538 226 LWNTSTT 232 (1057)
Q Consensus 226 lWd~~~~ 232 (1057)
|||....
T Consensus 175 ~~D~Rd~ 181 (609)
T KOG4227|consen 175 FIDNRDR 181 (609)
T ss_pred EEeccCC
Confidence 9999764
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=1.9e-08 Score=107.92 Aligned_cols=164 Identities=21% Similarity=0.280 Sum_probs=116.9
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCC------ceeeeec--CCCCEEEEEEecCCcEEEEEccCCcEEEEEEe
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESR------SLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYD 97 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~------~~l~tl~--~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d 97 (1057)
..-|.+|+|+.++++|++++.|-.+.||+++.. +++.... +.++|.|++|.....++|.|..+|+ |+.-|
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~--VI~HD 133 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT--VIKHD 133 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce--eEeee
Confidence 445999999999999999999999999998652 2333232 2379999999999999999999995 44445
Q ss_pred CCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCe-EEEEecCCcccccCC
Q 001538 98 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDG 176 (1057)
Q Consensus 98 ~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~-~~~~~~~~~~~~~~~ 176 (1057)
.+..+-. |... . ....+.|..+..||.| . .+++..++|.|.+||.++.. .+..+-
T Consensus 134 iEt~qsi---~V~~-~---------~~~~~~VY~m~~~P~D-N-~~~~~t~~~~V~~~D~Rd~~~~~~~~~--------- 189 (609)
T KOG4227|consen 134 IETKQSI---YVAN-E---------NNNRGDVYHMDQHPTD-N-TLIVVTRAKLVSFIDNRDRQNPISLVL--------- 189 (609)
T ss_pred cccceee---eeec-c---------cCcccceeecccCCCC-c-eEEEEecCceEEEEeccCCCCCCceee---------
Confidence 5432111 2211 0 1124589999999973 4 58999999999999998654 111110
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 177 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 177 ~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
|+.. .+...++-|++-.-..|++.++.|-+-+||.....
T Consensus 190 ----~AN~--------------~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 190 ----PANS--------------GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred ----ecCC--------------CccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence 0111 45677899993345788999999999999997643
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=4.8e-09 Score=124.00 Aligned_cols=176 Identities=13% Similarity=0.169 Sum_probs=121.6
Q ss_pred CCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCC---CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEE
Q 001538 6 DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 82 (1057)
Q Consensus 6 dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d---~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l 82 (1057)
+.+|+||..++........+..++...+|+|++.+|+.++.+ .+|.+||+.+++.......++...+.+|+|++++|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 468999987665433334456689999999999999988754 36999999987643222344555678999999998
Q ss_pred EEEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE-CCCEEEEEEccCC
Q 001538 83 YIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEA 160 (1057)
Q Consensus 83 ~vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~-~dG~I~lWdl~~~ 160 (1057)
+++. .+|.+.||.+|.+.+.+. ++. .+...+.+..|+| +|++|+.++ .+|...||++...
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~~----~lt------------~~~~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTPS----QLT------------SGAGNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCeE----eec------------cCCCCcCCEEECC--CCCEEEEEECCCCCceEEEEECC
Confidence 8765 689889999988665443 111 1123577889999 688777655 5688888876432
Q ss_pred -eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 161 -QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 161 -~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
.....+.. .. .+..|+ |||++|+.++.++ +.+||+.++.
T Consensus 325 ~~~~~~l~~------------------------------~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 325 GGGASLVGG------------------------------RG--YSAQIS-ADGKTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred CCCeEEecC------------------------------CC--CCccCC-CCCCEEEEEcCCC-EEEEECCCCC
Confidence 11122111 11 346799 9999999888765 5669997763
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.03 E-value=4.6e-09 Score=116.83 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=120.3
Q ss_pred ccccCCcEEEEcCC-CeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeee-cCCCCEEEEEEecCC
Q 001538 2 CLCRDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGS 79 (1057)
Q Consensus 2 vgt~dG~I~v~g~~-~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl-~~~~~Ita~~~sp~~ 79 (1057)
+.|.||++++..+. ++|... ..+...+.+-+|+++|.-|++++.||.|++|+ ++|-+..++ +.+..|.|+++.|++
T Consensus 80 i~s~DGkf~il~k~~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 80 ICSNDGRFVILNKSARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNS 157 (737)
T ss_pred EEcCCceEEEecccchhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCC
Confidence 56889999998764 445432 34566788999999999999999999999998 466665555 577899999999998
Q ss_pred cEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccC
Q 001538 80 HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 159 (1057)
Q Consensus 80 ~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~ 159 (1057)
+-++. +..|.+.+--+.... -.|.| +.|.+-|.++.|+| ..+.+++|++|...++||-.
T Consensus 158 ~~vl~-c~g~h~~IKpL~~n~-------k~i~W----------kAHDGiiL~~~W~~--~s~lI~sgGED~kfKvWD~~- 216 (737)
T KOG1524|consen 158 NSIVF-CQGGHISIKPLAANS-------KIIRW----------RAHDGLVLSLSWST--QSNIIASGGEDFRFKIWDAQ- 216 (737)
T ss_pred CceEE-ecCCeEEEeeccccc-------ceeEE----------eccCcEEEEeecCc--cccceeecCCceeEEeeccc-
Confidence 76654 344544444332211 11222 34778899999999 46789999999999999975
Q ss_pred CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEE
Q 001538 160 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 225 (1057)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~ 225 (1057)
|..++... .++-+|++++|. || ..++.|+. ++++
T Consensus 217 G~~Lf~S~-----------------------------~~ey~ITSva~n-pd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 217 GANLFTSA-----------------------------AEEYAITSVAFN-PE-KDYLLWSY-NTAR 250 (737)
T ss_pred CcccccCC-----------------------------hhccceeeeeec-cc-cceeeeee-eeee
Confidence 33332211 127799999999 99 55555543 3444
No 203
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.02 E-value=6.2e-09 Score=112.33 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=115.5
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecCCCCc
Q 001538 443 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDA 521 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~~~ 521 (1057)
.+.+.|++|++|-+|.||++-.+.+. ..+...+ +.|.||...|-.|+|+|-.. .|++++.|.+|.||++.+....
T Consensus 92 fnD~vIASgSeD~~v~vW~IPe~~l~--~~ltepv--v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal 167 (472)
T KOG0303|consen 92 FNDCVIASGSEDTKVMVWQIPENGLT--RDLTEPV--VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL 167 (472)
T ss_pred cCCceeecCCCCceEEEEECCCcccc--cCcccce--EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee
Confidence 35678999999999999998766531 1122222 35679999999999999654 7889999999999999876542
Q ss_pred cceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCC-
Q 001538 522 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP- 600 (1057)
Q Consensus 522 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~- 600 (1057)
..+ .|...|.+++|+.||.+|++.+.|..|+|||.++++++..... |.+.
T Consensus 168 -------------------------i~l-~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~---heG~k 218 (472)
T KOG0303|consen 168 -------------------------ITL-DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA---HEGAK 218 (472)
T ss_pred -------------------------eec-CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc---ccCCC
Confidence 123 3999999999999999999999999999999999999977643 3321
Q ss_pred eEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEE---ecCCeEEEEeCCC
Q 001538 601 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVL---FKDAKISIVGGSS 651 (1057)
Q Consensus 601 V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sg---t~dg~i~v~d~~t 651 (1057)
-..+-|- -++.++-+| ..+..+.+||..+
T Consensus 219 ~~Raifl----------------------~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 219 PARAIFL----------------------ASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred cceeEEe----------------------ccCceeeeccccccccceeccCccc
Confidence 2233444 345544444 3578899998765
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.3e-09 Score=116.01 Aligned_cols=184 Identities=13% Similarity=0.146 Sum_probs=126.0
Q ss_pred cccCCcEEEEcCCCeEEE-EEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CC--CCEEEEEEecC
Q 001538 3 LCRDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WE--SNITAFSVISG 78 (1057)
Q Consensus 3 gt~dG~I~v~g~~~~e~~-~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~--~~Ita~~~sp~ 78 (1057)
|..||.+|||.-+..+.+ .+..+...|++|.|+||+.+|++++.| ..+||++.++..+.... .+ ..+..+-|+.+
T Consensus 162 gg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d 240 (398)
T KOG0771|consen 162 GGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVD 240 (398)
T ss_pred ccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceeccc
Confidence 456888999884444433 344567789999999999999999999 99999999997666554 22 33444444443
Q ss_pred C--cEEEEEc---cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEE
Q 001538 79 S--HFMYIGD---ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 153 (1057)
Q Consensus 79 ~--~~l~vG~---~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~ 153 (1057)
. +.+++.. ..|.|+++....-.+. . ..+..++ ......|.+++.++ +|+.+++|..+|.|.
T Consensus 241 ~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~----~l~~~~~-------~~~~~siSsl~VS~--dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 241 NAQETLRLAASQFPGGGVRLCDISLWSGS-N----FLRLRKK-------IKRFKSISSLAVSD--DGKFLALGTMDGSVA 306 (398)
T ss_pred CCCceEEEEEecCCCCceeEEEeeeeccc-c----ccchhhh-------hhccCcceeEEEcC--CCcEEEEeccCCcEE
Confidence 3 3332222 2333444332221110 0 0000000 11244699999999 799999999999999
Q ss_pred EEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 154 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
||+..+-+.++.... .| ..-||.+.|+ ||.+.+++.+.|.++.+-.+.
T Consensus 307 i~~~~~lq~~~~vk~--------aH--------------------~~~VT~ltF~-Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKE--------AH--------------------LGFVTGLTFS-PDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehh--------hh--------------------eeeeeeEEEc-CCcCcccccccCCceeEEEEe
Confidence 999998888776553 23 6789999999 999999999999998887764
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.99 E-value=2.8e-08 Score=105.01 Aligned_cols=179 Identities=12% Similarity=0.218 Sum_probs=131.9
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECC-CCceeeeec---CCCCEEEEEEecCCcEE
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCLK---WESNITAFSVISGSHFM 82 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~-s~~~l~tl~---~~~~Ita~~~sp~~~~l 82 (1057)
+.+-||+.-.-..+.+..-..+|+++.+..+. ||.+ .++.|.||... .-+.++.+. -+....++.......+|
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 45778985544455556667789999998876 6655 68999999987 566666663 24445555554444444
Q ss_pred EE-EccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCE-EEEEEccCC
Q 001538 83 YI-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL-VILWDVSEA 160 (1057)
Q Consensus 83 ~v-G~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~-I~lWdl~~~ 160 (1057)
+. |..-|.|+|..+...... .|..|+ .|.+.|.||+.+- +|++||+++..|+ |+|||..+|
T Consensus 152 afPg~k~GqvQi~dL~~~~~~---~p~~I~------------AH~s~Iacv~Ln~--~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN---APSIIN------------AHDSDIACVALNL--QGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC---CceEEE------------cccCceeEEEEcC--CccEEEEeccCcEEEEEEEcCCC
Confidence 33 667798888876543211 123333 4678999999998 7999999999996 799999999
Q ss_pred eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 161 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
..++-+... .....|.|++|+ ||+++||+.++-|+|.++.+....
T Consensus 215 ~~l~E~RRG---------------------------~d~A~iy~iaFS-p~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 215 TLLQELRRG---------------------------VDRADIYCIAFS-PNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEeeeeecC---------------------------CchheEEEEEeC-CCccEEEEEcCCCeEEEEEeecCC
Confidence 988766531 015789999999 999999999999999999997643
No 206
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1e-07 Score=110.59 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=117.4
Q ss_pred ccccCCcEEEEcCCCeEEEE-EcCCCCCeeEEEEEcCC----cEEEEEeCCCcEEEEECCCCceeeeecC-CCCEEEEEE
Q 001538 2 CLCRDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQ----GFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSV 75 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~~-~~~~~~~v~~L~F~~~~----~~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~ 75 (1057)
+|...|+|-||+-.-.-++. ..++..++..|+|.+.+ ..|+++...++|.+||..+|+.+-.... +....|+.+
T Consensus 84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~ 163 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV 163 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee
Confidence 35567999999753222222 23456789999999854 3688899999999999999998755543 455678999
Q ss_pred ec-CCcEEEEEccCCcEEEEEEeCCC---CceeccCcccchh----hhhh---hcCCC--CCCCCC-----eEEEEeCcC
Q 001538 76 IS-GSHFMYIGDENGLMSVIKYDADE---GKLFQLPYNISAD----ALSE---KAGFP--LLSHQP-----VVGVLPHPN 137 (1057)
Q Consensus 76 sp-~~~~l~vG~~~G~v~v~~~d~~~---~~l~~~~~~i~~~----~~~~---~~g~~--~~~~~~-----V~sI~~sP~ 137 (1057)
+| +...+.+-+..| .|+..+.-. .......+.|..+ .+.+ +.|.+ ....+. ....+|+|.
T Consensus 164 DPfd~rh~~~l~s~g--~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~ 241 (1062)
T KOG1912|consen 164 DPFDSRHFCVLGSKG--FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH 241 (1062)
T ss_pred CCCCcceEEEEccCc--eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence 98 445555555556 344433211 0000012344322 1111 11111 111111 234577885
Q ss_pred CCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCC--EE
Q 001538 138 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS--IL 215 (1057)
Q Consensus 138 d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~--~l 215 (1057)
--+.+++.|--+.. ++|++=...+.+..- + .+.+.=+.|- |+++ .+
T Consensus 242 -~rn~lfi~~prell-v~dle~~~~l~vvpi---------e--------------------r~~akfv~vl-P~~~rd~L 289 (1062)
T KOG1912|consen 242 -WRNILFITFPRELL-VFDLEYECCLAVVPI---------E--------------------RGGAKFVDVL-PDPRRDAL 289 (1062)
T ss_pred -hhceEEEEeccceE-EEcchhhceeEEEEe---------c--------------------cCCcceeEec-cCCCcceE
Confidence 35567888777665 999986666554332 1 3334455666 7664 59
Q ss_pred EEEEcCCcEEEEeCCC
Q 001538 216 AVGYIDGDILLWNTST 231 (1057)
Q Consensus 216 atg~~DG~I~lWd~~~ 231 (1057)
.++|.||.+.||--..
T Consensus 290 fclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 290 FCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEecCCeEEEEEeec
Confidence 9999999999997654
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.6e-07 Score=95.59 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=105.0
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCc
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 521 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~ 521 (1057)
.|..+-+++++.|+.+.-||+.++..+. .+.||+.-|.+|.--..+..+.+|++||+|||||.++.+..
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~r-----------~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v 191 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQR-----------EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHV 191 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEEE-----------EEcCCcceeeeeeecccCcceeecCCCccEEEEecccccee
Confidence 3444556667799999999999998532 34589999999988556667889999999999999876542
Q ss_pred cceeeeecCCCceEEeccCCcceeeEEEeeCCC-CeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCC
Q 001538 522 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNS-PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP 600 (1057)
Q Consensus 522 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~-~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~ 600 (1057)
..|...+.. ..++.|.+ .|-||+-+.| +|+.|+.-. +.+|+++..+....+.. ..+
T Consensus 192 -------------~~ie~yk~~---~~lRp~~g~wigala~~ed--WlvCGgGp~-lslwhLrsse~t~vfpi----pa~ 248 (325)
T KOG0649|consen 192 -------------SMIEPYKNP---NLLRPDWGKWIGALAVNED--WLVCGGGPK-LSLWHLRSSESTCVFPI----PAR 248 (325)
T ss_pred -------------EEeccccCh---hhcCcccCceeEEEeccCc--eEEecCCCc-eeEEeccCCCceEEEec----ccc
Confidence 112111100 12233433 5888887654 777777654 99999998777766653 677
Q ss_pred eEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 601 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 601 V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
|..+.|. .+++++++.-..|.-|..
T Consensus 249 v~~v~F~------------------------~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 249 VHLVDFV------------------------DDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred eeEeeee------------------------cceEEEeccccceeeeee
Confidence 8888886 456777777777777744
No 208
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.96 E-value=3.7e-08 Score=104.00 Aligned_cols=211 Identities=13% Similarity=0.233 Sum_probs=141.8
Q ss_pred CCCCCeeEEEEE-------cCCcEEEEEeCCCcEEEEECCCCceeeeecC---CCC---EEEEEEecCCcEEEEEccCCc
Q 001538 24 PSQLPYKNLEFL-------QNQGFLISITNDNEIQVWSLESRSLACCLKW---ESN---ITAFSVISGSHFMYIGDENGL 90 (1057)
Q Consensus 24 ~~~~~v~~L~F~-------~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~---~~~---Ita~~~sp~~~~l~vG~~~G~ 90 (1057)
+.+..|..-.+- |+..+.++.+.++-|++||..+|++.+++.. -.. -.++.|+|+|.+|+.|..+.
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrc- 180 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC- 180 (406)
T ss_pred ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccce-
Confidence 334445554444 4556777778899999999999999887752 223 34789999999999987665
Q ss_pred EEEEEE-eCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCC
Q 001538 91 MSVIKY-DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGK 169 (1057)
Q Consensus 91 v~v~~~-d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~ 169 (1057)
|+|++. .+.+.+-. |... ++++ .+..+-+.+++|+|.+ .+.+++++-...+-||.-..+++.+.+.+
T Consensus 181 irvFdt~RpGr~c~v---y~t~--~~~k-----~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llgg- 248 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPV---YTTV--TKGK-----FGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGG- 248 (406)
T ss_pred EEEeeccCCCCCCcc---hhhh--hccc-----ccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecc-
Confidence 677775 22222111 2211 1111 1224668999999985 54588887777888999888888887776
Q ss_pred cccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc-CCcEEEEeCCCCCccCCCCCCCCCccee
Q 001538 170 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTSTTASTKGQQTGSRNNVVK 248 (1057)
Q Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~-DG~I~lWd~~~~~~~~~~~~~~~~~i~k 248 (1057)
| .+.||.++|+ +||++|.+|.. |-.|..||+..-. .++..
T Consensus 249 --------h--------------------~gGvThL~~~-edGn~lfsGaRk~dkIl~WDiR~~~----------~pv~~ 289 (406)
T KOG2919|consen 249 --------H--------------------GGGVTHLQWC-EDGNKLFSGARKDDKILCWDIRYSR----------DPVYA 289 (406)
T ss_pred --------c--------------------CCCeeeEEec-cCcCeecccccCCCeEEEEeehhcc----------chhhh
Confidence 3 7899999999 99999999975 7789999997532 24444
Q ss_pred eecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcC
Q 001538 249 LELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 299 (1057)
Q Consensus 249 l~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~ 299 (1057)
|.-+...-...| . +. -.+.+++|++|+.+ ..+.+|++.
T Consensus 290 L~rhv~~TNQRI-~--FD------ld~~~~~LasG~td----G~V~vwdlk 327 (406)
T KOG2919|consen 290 LERHVGDTNQRI-L--FD------LDPKGEILASGDTD----GSVRVWDLK 327 (406)
T ss_pred hhhhccCccceE-E--Ee------cCCCCceeeccCCC----ccEEEEecC
Confidence 433222111112 1 12 23466788888766 467887754
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.4e-07 Score=111.85 Aligned_cols=176 Identities=11% Similarity=0.129 Sum_probs=122.8
Q ss_pred cEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeC---CCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE-
Q 001538 8 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY- 83 (1057)
Q Consensus 8 ~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~---d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~- 83 (1057)
+|.++..++........+..++...+|+||+.+|+-++. +..|.+||+.+++.......++.+.+.+++|+++.|+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEE
Confidence 788887665443333445668999999999998888764 4689999999887643334566788899999999875
Q ss_pred EEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC-CC--EEEEEEccCC
Q 001538 84 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 160 (1057)
Q Consensus 84 vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~-dG--~I~lWdl~~~ 160 (1057)
+...+|+..||.+|.+.+.+. ++.. +.....+..|+| +|++|+.++. +| .|.+||+.++
T Consensus 263 ~~~~~g~~~Iy~~d~~~~~~~----~Lt~------------~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSGTTT----RLTD------------SPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EEecCCCceEEEEECCCCceE----EccC------------CCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCC
Confidence 556677778888888765543 1111 122356689999 6888887764 33 6888898777
Q ss_pred eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC---CcEEEEeCCCC
Q 001538 161 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTSTT 232 (1057)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D---G~I~lWd~~~~ 232 (1057)
+....... ...+....|+ |||++|+..+.+ ..|.+||+.++
T Consensus 325 ~~~~lt~~------------------------------~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 325 NPRRISFG------------------------------GGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CeEEeecC------------------------------CCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCC
Confidence 66543322 2345567899 999999887654 35788887543
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.95 E-value=6.1e-08 Score=104.39 Aligned_cols=173 Identities=13% Similarity=0.177 Sum_probs=124.9
Q ss_pred EEEEc--CCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-C---CCCEEEEEEecCCcEE
Q 001538 9 IKVIG--GDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-W---ESNITAFSVISGSHFM 82 (1057)
Q Consensus 9 I~v~g--~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~---~~~Ita~~~sp~~~~l 82 (1057)
.||+. +..+-|-+..| .+|.++++..+ +|+++=.+ .|.|+|+..-++++++. + +..+.++++.....|+
T Consensus 70 Lkv~~~Kk~~~ICe~~fp--t~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIFFP--TSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred EEEEEcccCceEEEEecC--CceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceE
Confidence 45543 33333333444 46888888554 57766544 49999999999999995 3 2347777777777788
Q ss_pred EEEc--cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCE-EEEEEccC
Q 001538 83 YIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL-VILWDVSE 159 (1057)
Q Consensus 83 ~vG~--~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~-I~lWdl~~ 159 (1057)
+.-+ ..|.|.||+ ....+-. -.| ..|.+++.+|+|+| +|++||++++.|+ |+++++.+
T Consensus 145 Ayp~s~t~GdV~l~d--~~nl~~v---~~I------------~aH~~~lAalafs~--~G~llATASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFD--TINLQPV---NTI------------NAHKGPLAALAFSP--DGTLLATASEKGTVIRVFSVPE 205 (391)
T ss_pred EecCCCCCceEEEEE--cccceee---eEE------------EecCCceeEEEECC--CCCEEEEeccCceEEEEEEcCC
Confidence 7643 457555554 4322111 112 24678999999999 7999999999996 69999999
Q ss_pred CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 160 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
|+.+..|.... ....|.+++|+ ||+.+|++.+..++|.++.+....
T Consensus 206 G~kl~eFRRG~---------------------------~~~~IySL~Fs-~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 206 GQKLYEFRRGT---------------------------YPVSIYSLSFS-PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ccEeeeeeCCc---------------------------eeeEEEEEEEC-CCCCeEEEecCCCeEEEEEecccc
Confidence 99887776410 04578999999 999999999999999999997643
No 211
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=4.5e-07 Score=105.38 Aligned_cols=155 Identities=13% Similarity=0.121 Sum_probs=109.6
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC-CCCEEEEEEecC------------CcEEEEEccCCcEEE
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISG------------SHFMYIGDENGLMSV 93 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~sp~------------~~~l~vG~~~G~v~v 93 (1057)
..-.++.++++| |++-+..+.|-|-|..+-+++.++.. ...|+.+.|.|- .-.+++++.+|.|-+
T Consensus 16 sN~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 335677889998 88888999999999999999988864 478999988763 125788999997777
Q ss_pred EEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCc-CCCC-CeEEEEECCCEEEEEEccCCeEEEEecCCcc
Q 001538 94 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP-NSSG-NRVLIAYENALVILWDVSEAQIIFVGGGKDL 171 (1057)
Q Consensus 94 ~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP-~d~g-~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~ 171 (1057)
|++-.. -.+.|. .++..+|..+.|-| +|+. ..|+......++.||+..+|+......|.
T Consensus 94 ~d~~~~--------s~~~~l---------~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-- 154 (1062)
T KOG1912|consen 94 VDFVLA--------SVINWL---------SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-- 154 (1062)
T ss_pred EEehhh--------hhhhhh---------cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC--
Confidence 765431 122222 22456788888876 4455 45666677789999999999887655541
Q ss_pred cccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeC
Q 001538 172 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 229 (1057)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~ 229 (1057)
.....|+.+.+-|.+++..-+.-|-+.+-+.
T Consensus 155 ---------------------------~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 155 ---------------------------HEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred ---------------------------CcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 3345567777446677776666777766654
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=4.8e-06 Score=95.95 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=93.8
Q ss_pred CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCccc-chhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEE
Q 001538 66 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNI-SADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 144 (1057)
Q Consensus 66 ~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i-~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~ll 144 (1057)
...+..|++|.....|++.|..+|.++|++++.+...+...+..- .++..+ -...+|...|.-+.|+- ....|-
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmN---QtLeGH~~sV~vvTWNe--~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMN---QTLEGHNASVMVVTWNE--NNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchh---hhhccCcceEEEEEecc--cccccc
Confidence 345778999999999999999999999999987653333222111 111100 02356888999999998 355588
Q ss_pred EEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcE
Q 001538 145 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 224 (1057)
Q Consensus 145 i~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I 224 (1057)
++.++|.|.+|-+-.|...--... .....-|.+++|. .||..|+..|.||-|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiN---------------------------nRnKSvV~SmsWn-~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMIN---------------------------NRNKSVVVSMSWN-LDGTKICIVYEDGAV 139 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhh---------------------------CcCccEEEEEEEc-CCCcEEEEEEccCCE
Confidence 888899999999876654311111 0115678999999 999999999999999
Q ss_pred EEEeC
Q 001538 225 LLWNT 229 (1057)
Q Consensus 225 ~lWd~ 229 (1057)
.+=.+
T Consensus 140 IVGsv 144 (1189)
T KOG2041|consen 140 IVGSV 144 (1189)
T ss_pred EEEee
Confidence 88555
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=1.2e-07 Score=112.06 Aligned_cols=176 Identities=11% Similarity=0.109 Sum_probs=119.4
Q ss_pred cEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeC---CCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEE
Q 001538 8 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 84 (1057)
Q Consensus 8 ~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~---d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~v 84 (1057)
+|.|+..++........+..++...+|+||+..|+-++. +..|.+||+.+++.......++.+.+..++|++++|+.
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 688887665433222345568999999999998886653 35799999998875443344556678899999998876
Q ss_pred E-ccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC-C--EEEEEEccCC
Q 001538 85 G-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSEA 160 (1057)
Q Consensus 85 G-~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d-G--~I~lWdl~~~ 160 (1057)
. ..+|...||.+|.+.+++.+ +.. ....+....|+| +|++|+.++.+ | .|.++|+.++
T Consensus 260 ~~~~~g~~~I~~~d~~tg~~~~----lt~------------~~~~~~~~~wSP--DG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQIRQ----VTD------------GRSNNTEPTWFP--DSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred EEcCCCCcEEEEEECCCCCEEE----ccC------------CCCCcCceEECC--CCCEEEEEeCCCCCceEEEEECCCC
Confidence 5 55777678888877665441 110 123467889999 68888777764 4 4445577666
Q ss_pred eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC---CcEEEEeCCCC
Q 001538 161 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTSTT 232 (1057)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D---G~I~lWd~~~~ 232 (1057)
+....... .....+.+|+ |||++|+..+.+ ..|.+||+.++
T Consensus 322 ~~~~lt~~------------------------------~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 322 APQRITWE------------------------------GSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CeEEeecC------------------------------CCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCC
Confidence 55432211 2234568899 999998876654 35888998765
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=7.3e-08 Score=108.58 Aligned_cols=251 Identities=15% Similarity=0.278 Sum_probs=149.5
Q ss_pred cCCCCCeeEEEEEcCCcEEEEEe-CCCcEEEEECCCCceeeeecCCCCEEEE----------------------------
Q 001538 23 SPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLKWESNITAF---------------------------- 73 (1057)
Q Consensus 23 ~~~~~~v~~L~F~~~~~~Lvs~s-~d~~I~VWdl~s~~~l~tl~~~~~Ita~---------------------------- 73 (1057)
+......+.|..+|||+||++++ ..-.|+|||+..-.+-..-..+..+..|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 34456688899999999987665 6789999999875442111111111111
Q ss_pred ------------EEe-cCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCC
Q 001538 74 ------------SVI-SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 140 (1057)
Q Consensus 74 ------------~~s-p~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g 140 (1057)
+.. |+.+. |++...- .|+.++.+.|++. .||.+. .+.+.+|..+|. .
T Consensus 128 y~~RIP~~GRDm~y~~~scDl-y~~gsg~--evYRlNLEqGrfL-~P~~~~--------------~~~lN~v~in~~--h 187 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDL-YLVGSGS--EVYRLNLEQGRFL-NPFETD--------------SGELNVVSINEE--H 187 (703)
T ss_pred eeeecCcCCccccccCCCccE-EEeecCc--ceEEEEccccccc-cccccc--------------cccceeeeecCc--c
Confidence 111 22233 3333333 4566666666543 244433 357899999994 4
Q ss_pred CeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001538 141 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 220 (1057)
Q Consensus 141 ~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~ 220 (1057)
.+|++|..+|.|-.||.++...+.++.+... + ..-++++ ..+.|+++.|+ -||.++++|..
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-----v----~s~pg~~---------~~~svTal~F~-d~gL~~aVGts 248 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-----V----NSHPGGD---------AAPSVTALKFR-DDGLHVAVGTS 248 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccc-----c----CCCcccc---------ccCcceEEEec-CCceeEEeecc
Confidence 4788888899999999999888777665100 0 0112222 26789999999 78999999999
Q ss_pred CCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCc
Q 001538 221 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 300 (1057)
Q Consensus 221 DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~ 300 (1057)
+|.+.|+|+.+.. |+.. .-.....||..+.|.. . +.+..+++.-. ..+.+|+
T Consensus 249 ~G~v~iyDLRa~~-----------pl~~---kdh~~e~pi~~l~~~~-----~-~~q~~v~S~Dk-----~~~kiWd--- 300 (703)
T KOG2321|consen 249 TGSVLIYDLRASK-----------PLLV---KDHGYELPIKKLDWQD-----T-DQQNKVVSMDK-----RILKIWD--- 300 (703)
T ss_pred CCcEEEEEcccCC-----------ceee---cccCCccceeeecccc-----c-CCCceEEecch-----HHhhhcc---
Confidence 9999999997642 3221 1122457899999964 2 22222332211 2344433
Q ss_pred ccccccceeeeeeeecCCCcccEEEEeecCCCCCCCCceEEEEEcCCCeeEEe
Q 001538 301 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFY 353 (1057)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~d~~~~p~~~~~g~~~~~~lv~l~~~G~l~~~ 353 (1057)
...+.+ -..+.....+.|++++|.++ .+++..+++.+..|
T Consensus 301 -~~~Gk~----~asiEpt~~lND~C~~p~sG--------m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 301 -ECTGKP----MASIEPTSDLNDFCFVPGSG--------MFFTANESSKMHTY 340 (703)
T ss_pred -cccCCc----eeeccccCCcCceeeecCCc--------eEEEecCCCcceeE
Confidence 211111 11122334578889998876 55555555555543
No 215
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.88 E-value=7.2e-08 Score=100.79 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=91.3
Q ss_pred CCEEEEEEecCCCeEEEE--ecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC
Q 001538 487 APVSTLSFCFINSSLAVG--NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS 564 (1057)
Q Consensus 487 ~~V~~v~fspd~~~Lavg--~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~ 564 (1057)
.+|.+++|+|++..+|+. ..++.|.||+++.. .....+..+++.|.|||+
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~----------------------------~i~~~~~~~~n~i~wsP~ 111 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK----------------------------KIFSFGTQPRNTISWSPD 111 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCccc----------------------------EeEeecCCCceEEEECCC
Confidence 479999999999987664 45679999998521 123335678899999999
Q ss_pred CCEEEEEeC---CceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEec-
Q 001538 565 GAKLAVGFE---CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK- 640 (1057)
Q Consensus 565 g~~lA~G~~---dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~- 640 (1057)
|++||+|+. .|.|.+||++..+.+.... ...++.++|+ |||++|++++.
T Consensus 112 G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~Ws----------------------PdGr~~~ta~t~ 164 (194)
T PF08662_consen 112 GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWS----------------------PDGRYLATATTS 164 (194)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEc----------------------CCCCEEEEEEec
Confidence 999999864 4779999999988887653 2457899999 99999998874
Q ss_pred -----CCeEEEEeCCCcceeecC
Q 001538 641 -----DAKISIVGGSSENMISSS 658 (1057)
Q Consensus 641 -----dg~i~v~d~~tg~~i~~~ 658 (1057)
|..++||+.. |+++...
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cceeccccEEEEEec-CeEeEec
Confidence 7889999874 6666543
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1.3e-07 Score=111.63 Aligned_cols=178 Identities=12% Similarity=0.097 Sum_probs=118.9
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCC---CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 83 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d---~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~ 83 (1057)
.+|.++..++...........++...+|+||+..|+.++.+ ..|.+||+.+++.......++.+.+.+|+|+++.++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 46777766543322223445678899999999988877643 359999999987644334566778899999999887
Q ss_pred E-EccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC-CCEEEEEEc--cC
Q 001538 84 I-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDV--SE 159 (1057)
Q Consensus 84 v-G~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~-dG~I~lWdl--~~ 159 (1057)
+ ...+|...||.+|.+.+.+. ++.. +...+.+..|+| +|++|+..+. .|...||.+ .+
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~----~lt~------------~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLR----RLTQ------------SSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred EEEccCCCceEEEEECCCCCcE----ECCC------------CCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCC
Confidence 5 67788889999987654432 1111 122345678999 6888876654 455556654 45
Q ss_pred CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCC---cEEEEeCCCCC
Q 001538 160 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTTA 233 (1057)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG---~I~lWd~~~~~ 233 (1057)
++....... ........|+ |||++|+..+.++ .|.+||+.++.
T Consensus 318 g~~~~lt~~------------------------------g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 318 GAAQRVTFT------------------------------GSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CceEEEecC------------------------------CCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 544332211 1123356899 9999998777654 59999997763
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.87 E-value=1.1e-05 Score=92.86 Aligned_cols=103 Identities=18% Similarity=0.311 Sum_probs=69.1
Q ss_pred cEEEE-EccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEcc
Q 001538 80 HFMYI-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 158 (1057)
Q Consensus 80 ~~l~v-G~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~ 158 (1057)
+++++ -..+| +|+.+|..+.++. -+|+.. ..+-..+.|+| +|+++.++.+||.|.++|+.
T Consensus 6 ~l~~V~~~~~~--~v~viD~~t~~~~---~~i~~~------------~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 6 NLFYVVERGSG--SVAVIDGATNKVV---ARIPTG------------GAPHAGLKFSP--DGRYLYVANRDGTVSVIDLA 66 (369)
T ss_dssp GEEEEEEGGGT--EEEEEETTT-SEE---EEEE-S------------TTEEEEEE-TT---SSEEEEEETTSEEEEEETT
T ss_pred cEEEEEecCCC--EEEEEECCCCeEE---EEEcCC------------CCceeEEEecC--CCCEEEEEcCCCeEEEEECC
Confidence 44544 44567 5566677665544 233310 11235577899 79999999999999999999
Q ss_pred CCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEE-EcCCcEEEEeCCCC
Q 001538 159 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTSTT 232 (1057)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg-~~DG~I~lWd~~~~ 232 (1057)
+++++....- .....+++++ +||++++++ +.++++.++|..+.
T Consensus 67 ~~~~v~~i~~------------------------------G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 67 TGKVVATIKV------------------------------GGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp SSSEEEEEE-------------------------------SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT-
T ss_pred cccEEEEEec------------------------------CCCcceEEEc-CCCCEEEEEecCCCceeEeccccc
Confidence 9998877654 3345789999 999988765 67999999999765
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=3.9e-08 Score=106.56 Aligned_cols=165 Identities=18% Similarity=0.248 Sum_probs=130.7
Q ss_pred cCCCCcEEEEEeCC--CcEEEEecCCCceeEEeeccc---ceeeeeecCCCCCEEEEEEecC--CCeEEEEecCccEEEE
Q 001538 441 CHSVDRVYLAGYHD--GSVRIWDATYPVFKLICALDA---EVQGIEVAGSRAPVSTLSFCFI--NSSLAVGNEFGLVYIY 513 (1057)
Q Consensus 441 ~~~~~~~liTG~~D--GtVriWd~~~~~l~~l~~l~~---~v~~i~l~~~~~~V~~v~fspd--~~~Lavg~~dG~V~l~ 513 (1057)
......++++|+.. ..++|||..... +++.-+. .-.++.+ +.-++.+.|-+. ...||+++.-+.|++|
T Consensus 157 ~~~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L~LrV---PvW~tdi~Fl~g~~~~~fat~T~~hqvR~Y 231 (412)
T KOG3881|consen 157 TDTDPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRLGLRV---PVWITDIRFLEGSPNYKFATITRYHQVRLY 231 (412)
T ss_pred CCCCCceEecCchhcccceeeeecccce--eeeeccCCCCcccccee---eeeeccceecCCCCCceEEEEecceeEEEe
Confidence 44566788899999 789999998763 5554432 1112222 236688899888 8899999999999999
Q ss_pred EecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeec
Q 001538 514 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD 593 (1057)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~ 593 (1057)
|.+.++. |+..+.....+|+++..-|+|+++.+|..-|.+..+|++++.++...
T Consensus 232 Dt~~qRR------------------------PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-- 285 (412)
T KOG3881|consen 232 DTRHQRR------------------------PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG-- 285 (412)
T ss_pred cCcccCc------------------------ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc--
Confidence 9986544 23455556889999999999999999999999999999999887542
Q ss_pred CCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 594 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 594 ~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
+.|.++.|.+|.-+ |...+|++++-|..|+|+|.+|-.+|...
T Consensus 286 ~kg~tGsirsih~h----------------------p~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 286 LKGITGSIRSIHCH----------------------PTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred cCCccCCcceEEEc----------------------CCCceEEeeccceeEEEeecccchhhhhh
Confidence 34678889999887 77789999999999999999997777654
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=3.2e-08 Score=109.60 Aligned_cols=173 Identities=13% Similarity=0.095 Sum_probs=112.6
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecCCCCccce
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
..+.|+++|+.|.=.|+++.......+-+..-+ .......+|+..|-.. ++|||+.|-.+++||.+.-......
T Consensus 246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~-----~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n 320 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE-----KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN 320 (559)
T ss_pred CcccccccccceeeeeeccCCccceeeeeccCC-----ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc
Confidence 357788899999888888765322221110000 0012467788888666 8999999999999998653222110
Q ss_pred eeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCC--CC------eE--EEEeecC
Q 001538 525 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN--LL------SV--LFFTDDI 594 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~--~~------~~--l~~~~~~ 594 (1057)
+ . -+-|.|........-.|||++||.++.-|.+.|.|-.|.++.-. .+ .. -+.....
T Consensus 321 -------~---~---~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 321 -------G---V---LDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred -------c---h---hhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 0 0 01233333344445679999999988888888999889999542 12 00 1111112
Q ss_pred CCCC--CCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeec
Q 001538 595 SGSS--SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 657 (1057)
Q Consensus 595 ~g~~--~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~ 657 (1057)
.||. .-|..+-|- ||-..++++|+.+|.|+|||..+|++|..
T Consensus 388 KGHrN~~TVKgVNFf---------------------GPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFF---------------------GPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred cccccccccceeeec---------------------cCccceEEecCccceEEEEecchhHHHHH
Confidence 3444 346677775 58899999999999999999999998765
No 220
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.85 E-value=2e-08 Score=117.08 Aligned_cols=156 Identities=13% Similarity=0.184 Sum_probs=119.5
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
+..+|.+..|-..+.|++++++|--++||+.++..++++.. +++.|+.++++...-+++.++-|..|+||.+.... +
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~--p 266 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA--P 266 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc--h
Confidence 34569999999999999999999999999999999999997 56899999999888889999999999999874321 1
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
.. +..+|.+.|++|+|+|+ ...+.||++++||.+-.-. .+ ||.
T Consensus 267 ----vs-----------vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~----~y------------~pr 309 (1113)
T KOG0644|consen 267 ----VS-----------VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPR----IY------------VPR 309 (1113)
T ss_pred ----HH-----------HHhccccceeeeccCcc------ccCCCCCceEecccccccc----cc------------CCC
Confidence 11 23467889999999995 3667899999999871111 11 011
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeC
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 229 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~ 229 (1057)
.+..+ +...+.++.|- .+|..++||+.|+.-..|.+
T Consensus 310 p~~~~---------~~~~~~s~~~~-~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 310 PLKFT---------EKDLVDSILFE-NNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred CCCcc---------cccceeeeecc-ccccccccccCCcccccchh
Confidence 11111 13566777777 88999999999988777765
No 221
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.84 E-value=0.00029 Score=89.92 Aligned_cols=194 Identities=13% Similarity=0.167 Sum_probs=122.6
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEE----ECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVW----SLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VW----dl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
..|..+.|.++..-|+.+..+|.|.+. +.....+-..-..+..|.|++|+||...+++.+.+|++-++.-|.+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~-- 153 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP-- 153 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE--
Confidence 569999999999889999999999999 66655543323457889999999999999999999977666533221
Q ss_pred eecc-----------Ccccchhhh--------hhhc-------CCCC---C---CCCCeEEEEeCcCCCCCeEEEEEC--
Q 001538 103 LFQL-----------PYNISADAL--------SEKA-------GFPL---L---SHQPVVGVLPHPNSSGNRVLIAYE-- 148 (1057)
Q Consensus 103 l~~~-----------~~~i~~~~~--------~~~~-------g~~~---~---~~~~V~sI~~sP~d~g~~lli~~~-- 148 (1057)
+... +-.+.|-.+ +++. ..+. . ....-+.|+|.. ||.++++.+-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG--DG~yFAVss~~~ 231 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG--DGEYFAVSSVEP 231 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC--CCcEEEEEEEEc
Confidence 1100 111222211 0100 0000 0 223457899988 7999998875
Q ss_pred -CC---EEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc---C
Q 001538 149 -NA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI---D 221 (1057)
Q Consensus 149 -dG---~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~---D 221 (1057)
.| .+++|+-. |.+..+.+. ..+--.+++|. |.|+.||+... .
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~-----------------------------v~gLe~~l~Wr-PsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEP-----------------------------VDGLEGALSWR-PSGNLIASSQRLPDR 280 (928)
T ss_pred CCCceeEEEEECCC-ceEEecccc-----------------------------CCCccCCccCC-CCCCEEEEEEEcCCC
Confidence 33 78888864 555443321 02223478999 99999999875 4
Q ss_pred CcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeec
Q 001538 222 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWST 267 (1057)
Q Consensus 222 G~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~ 267 (1057)
-.|.||.-+.-. + .-. .+........|..+.|.+
T Consensus 281 ~~VvFfErNGLr-h---------geF--~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 281 HDVVFFERNGLR-H---------GEF--TLRFDPEEEKVIELAWNS 314 (928)
T ss_pred cEEEEEecCCcE-e---------eeE--ecCCCCCCceeeEEEECC
Confidence 578888754321 0 001 111122355788999976
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=3.4e-07 Score=99.45 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=99.8
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccce
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
.+.++|+..-+.||+||...+.- +|.++.+. ..+|+++...|.+..+.+|..-|.+..||++.....+
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRR--------PV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g-- 283 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRR--------PVAQFDFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG-- 283 (412)
T ss_pred CceEEEEecceeEEEecCcccCc--------ceeEeccc--cCcceeeeecCCCcEEEEecccchhheecccCceeec--
Confidence 55799999999999999987652 23333333 3589999999999999999999999999997764432
Q ss_pred eeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEE
Q 001538 525 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl 604 (1057)
..+.+-.+.|++|...|.+++||+++-|..|+|+|+++..+++..- ..+.+++|
T Consensus 284 ----------------------~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY----vKs~lt~i 337 (412)
T KOG3881|consen 284 ----------------------CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY----VKSRLTFI 337 (412)
T ss_pred ----------------------cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh----hhccccEE
Confidence 2456778999999999999999999999999999999977776542 24556666
Q ss_pred EEe
Q 001538 605 TWT 607 (1057)
Q Consensus 605 ~f~ 607 (1057)
-+.
T Consensus 338 l~~ 340 (412)
T KOG3881|consen 338 LLR 340 (412)
T ss_pred Eec
Confidence 664
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.84 E-value=2.1e-07 Score=97.35 Aligned_cols=147 Identities=17% Similarity=0.297 Sum_probs=102.3
Q ss_pred EEEEEcCCcEEEEEeC----------CCcEEEEECCCC-ceeeeec--CCCCEEEEEEecCCcEEEE--EccCCcEEEEE
Q 001538 31 NLEFLQNQGFLISITN----------DNEIQVWSLESR-SLACCLK--WESNITAFSVISGSHFMYI--GDENGLMSVIK 95 (1057)
Q Consensus 31 ~L~F~~~~~~Lvs~s~----------d~~I~VWdl~s~-~~l~tl~--~~~~Ita~~~sp~~~~l~v--G~~~G~v~v~~ 95 (1057)
.|.+.+.|.+|+.-.. -+...+|-++.. .....+. ..+.|.+++++|+++.+++ |..++.|.+|+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5667777766654333 134566666433 3344443 3467999999999998755 44566666666
Q ss_pred EeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC---CCEEEEEEccCCeEEEEecCCccc
Q 001538 96 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQIIFVGGGKDLQ 172 (1057)
Q Consensus 96 ~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~---dG~I~lWdl~~~~~~~~~~~~~~~ 172 (1057)
.+ ++.. +.+. ..++..|.|+| .|++|++++- .|.|.+||+.+.+.+..+..
T Consensus 90 ~~---~~~i---~~~~--------------~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---- 143 (194)
T PF08662_consen 90 VK---GKKI---FSFG--------------TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---- 143 (194)
T ss_pred Cc---ccEe---Eeec--------------CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecccc----
Confidence 53 2222 2222 24678899999 6998888763 47899999998888766543
Q ss_pred ccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc------CCcEEEEeCCC
Q 001538 173 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI------DGDILLWNTST 231 (1057)
Q Consensus 173 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~------DG~I~lWd~~~ 231 (1057)
..++.++|+ |||++|+++.. |+.++||+...
T Consensus 144 ---------------------------~~~t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 144 ---------------------------SDATDVEWS-PDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ---------------------------CcEEEEEEc-CCCCEEEEEEeccceeccccEEEEEecC
Confidence 357899999 99999999874 89999999853
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.83 E-value=3.7e-07 Score=96.66 Aligned_cols=114 Identities=12% Similarity=0.166 Sum_probs=81.4
Q ss_pred EEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE-EEccCCcEEEEEEeCCCCceeccCcc
Q 001538 31 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYN 109 (1057)
Q Consensus 31 ~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~-vG~~~G~v~v~~~d~~~~~l~~~~~~ 109 (1057)
...|+|+|.|+++.+.- .+.|-|..+-++++-+..-.+|.-+.+..++.+++ +...++.|.+|.+...+.. -+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~-----ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY-----CK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE-----EE
Confidence 56899999999988654 88899988877655444345677888888877654 4556888999986543211 12
Q ss_pred cchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC-CCEEEEEEccCCeEEE
Q 001538 110 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQIIF 164 (1057)
Q Consensus 110 i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~-dG~I~lWdl~~~~~~~ 164 (1057)
|. ....++.++.|+| +|.+++..++ +-.|.+|++.+.+...
T Consensus 87 Id------------eg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 87 ID------------EGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred ec------------cCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE
Confidence 22 1245799999999 6866666555 6789999998877653
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=2.3e-07 Score=99.55 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=116.7
Q ss_pred CeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC--CCEEEEEEecC-CcEEEEEccCCcEEEEEEeCCCCcee
Q 001538 28 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 28 ~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~--~~Ita~~~sp~-~~~l~vG~~~G~v~v~~~d~~~~~l~ 104 (1057)
-++.+++.+-.-.++.+..|..|+++|-.+ +....++.. .+|+|+++-|- ..-+++|+..| |.+|..|... .+.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl-n~~ 176 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL-NAN 176 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc-ccc
Confidence 477788888665678888999999999777 555666644 68999999995 55799999999 6888765421 111
Q ss_pred ccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEE-ECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCC
Q 001538 105 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 105 ~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~-~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
..+.........-+.-+...+|++++|++ +|++++++ +.+..|.|||+.++..+.....
T Consensus 177 ---r~~~~~s~~~~qvl~~pgh~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--------------- 236 (445)
T KOG2139|consen 177 ---RNIRMMSTHHLQVLQDPGHNPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTGQKIPLIPK--------------- 236 (445)
T ss_pred ---cccccccccchhheeCCCCceeeEEEEcC--CCCEEeecccCcceEEEEcCCCCCccccccc---------------
Confidence 11110000000001122357899999999 68888876 5678999999998876532211
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
. -+.++-+.|+ |||.+|..+.-|+..++|+..
T Consensus 237 g--------------lgg~slLkwS-Pdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 237 G--------------LGGFSLLKWS-PDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred C--------------CCceeeEEEc-CCCCEEEEecccceeeeehhc
Confidence 0 4568889999 999999999999999999653
No 226
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=2.2e-07 Score=109.94 Aligned_cols=170 Identities=10% Similarity=0.046 Sum_probs=113.1
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEe-CCCcEEEE--ECCCCceeeeecCCCCEEEEEEecCCcEEE
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVW--SLESRSLACCLKWESNITAFSVISGSHFMY 83 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s-~d~~I~VW--dl~s~~~l~tl~~~~~Ita~~~sp~~~~l~ 83 (1057)
.+|++|...+.+.............++|+||+.+|+.+. .+|.+.|| |+.++.+.........+++.+|+|++++|+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~ 307 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSIL 307 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEE
Confidence 368888754432211111222345789999998888765 57766555 676766543333456788999999999876
Q ss_pred EE-ccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE
Q 001538 84 IG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 162 (1057)
Q Consensus 84 vG-~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~ 162 (1057)
.. ..+|..+||.++...+... .+. +.. .+..|+| +|+.|+.++.++.+ +||+.+++.
T Consensus 308 f~s~~~g~~~I~~~~~~~~~~~----~l~-------------~~~--~~~~~Sp--DG~~ia~~~~~~i~-~~Dl~~g~~ 365 (429)
T PRK01742 308 FTSDRSGSPQVYRMSASGGGAS----LVG-------------GRG--YSAQISA--DGKTLVMINGDNVV-KQDLTSGST 365 (429)
T ss_pred EEECCCCCceEEEEECCCCCeE----Eec-------------CCC--CCccCCC--CCCEEEEEcCCCEE-EEECCCCCe
Confidence 54 4678899999887543222 110 011 3467999 68888888777655 699998876
Q ss_pred EEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 163 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
...... ....+..|+ |||.+|+.++.+|.+.+|++-
T Consensus 366 ~~lt~~-------------------------------~~~~~~~~s-PdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 366 EVLSST-------------------------------FLDESPSIS-PNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEecCC-------------------------------CCCCCceEC-CCCCEEEEEEcCCCceEEEEE
Confidence 533221 012356799 999999999999999988864
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=3e-07 Score=108.94 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=118.5
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCC---CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 83 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d---~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~ 83 (1057)
.+|+||+.++........+..++...+|+|++.+|+.++.+ ..|.+||+.+++.......++...+..|+|++++++
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 46888876554333233445678999999999999887743 469999999887643333455666889999999876
Q ss_pred E-EccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC-CC--EEEEEEccC
Q 001538 84 I-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSE 159 (1057)
Q Consensus 84 v-G~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~-dG--~I~lWdl~~ 159 (1057)
+ .+.+|+..|+.+|...+.+.+ +.. +.......+|+| +|++|+.++. +| .|.++|+.+
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~~~----lt~------------~~~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQLTR----LTN------------HFGIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred EEEeCCCCceEEEEECCCCCeEE----Ccc------------CCCCccceEECC--CCCEEEEEECCCCCceEEEEECCC
Confidence 4 456776667777776654431 111 112345679999 6887877764 44 466677777
Q ss_pred CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCC---cEEEEeCCCC
Q 001538 160 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 232 (1057)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG---~I~lWd~~~~ 232 (1057)
++....... .......+|+ |||++|+..+.++ .|.+||+.++
T Consensus 326 g~~~~lt~~------------------------------g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 326 GSAERLTFQ------------------------------GNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCeEEeecC------------------------------CCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCC
Confidence 765433211 1223467899 9999998766543 5999998765
No 228
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.77 E-value=4.3e-09 Score=122.47 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=93.6
Q ss_pred CCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecC
Q 001538 428 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 507 (1057)
Q Consensus 428 l~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~d 507 (1057)
|-|+..++. ++.+...++.+|||+.|..|+||.+.+.. .+. ++.||...|+.++.+.++.++|+++.|
T Consensus 186 LlgH~naVy-ca~fDrtg~~Iitgsdd~lvKiwS~et~~--~lA---------s~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 186 LLGHRNAVY-CAIFDRTGRYIITGSDDRLVKIWSMETAR--CLA---------SCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHhhhhhee-eeeeccccceEeecCccceeeeeeccchh--hhc---------cCCCCccccchhccchhhhhhhhcccC
Confidence 344444432 22588899999999999999999977665 122 245899999999999999999999999
Q ss_pred ccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCC
Q 001538 508 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 583 (1057)
Q Consensus 508 G~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~ 583 (1057)
..|++|.+.... |+.++.+|++.||+|+|||-- +.+.||++++||.+
T Consensus 254 ~vIrvWrl~~~~-------------------------pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 254 KVIRVWRLPDGA-------------------------PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred ceEEEEecCCCc-------------------------hHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 999999987653 245788999999999999954 88899999999998
No 229
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.76 E-value=2.5e-08 Score=124.33 Aligned_cols=172 Identities=17% Similarity=0.240 Sum_probs=127.7
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
-++.-..|+||+.||+||+|..+.+. ++... +..|. ..|+.+.|+.+|..+.++..||.+.+|......+
T Consensus 2216 sHp~~~~Yltgs~dgsv~~~~w~~~~--~v~~~-------rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~ 2285 (2439)
T KOG1064|consen 2216 SHPSDPYYLTGSQDGSVRMFEWGHGQ--QVVCF-------RTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY 2285 (2439)
T ss_pred CCCCCceEEecCCCceEEEEeccCCC--eEEEe-------eccCc-chhhhhhhcccCCceeeeccCCceeecccCCcce
Confidence 46667789999999999999998876 23322 23344 7999999999999999999999999999875443
Q ss_pred cc---------ceeeeec--------C-CCceEEecc--CCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 001538 521 AK---------NFLFVLE--------T-KSEVHALPE--GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 580 (1057)
Q Consensus 521 ~~---------~~~~~~~--------~-~~~~~~i~~--~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vw 580 (1057)
.. .+.|+.. + ++.+..++. ..+.-+ +...|.+.+|+|++-|.-++|.+|+.+|.|+||
T Consensus 2286 ~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~--v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL--VHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred eccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce--eeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence 32 2334331 0 122222221 111122 236799999999999999999999999999999
Q ss_pred eCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecCc
Q 001538 581 DMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSP 659 (1057)
Q Consensus 581 Di~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~ 659 (1057)
|+++.+++++++. ++ ...++++|+..|.|+||++..-.+|.+.+
T Consensus 2364 D~rqrql~h~~~~------------~~-----------------------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA------------LD-----------------------TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ehHHHHHHHHhhh------------hh-----------------------hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999888776542 11 15679999999999999999888887764
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.74 E-value=6.8e-07 Score=105.52 Aligned_cols=176 Identities=14% Similarity=0.146 Sum_probs=118.5
Q ss_pred cEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCC---CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEE
Q 001538 8 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 84 (1057)
Q Consensus 8 ~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d---~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~v 84 (1057)
+|.++..++...........++....|+||+.+|+.++.+ ..|.+||+.+++........+.+.+++++|+++.+++
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 5666655432222122334568889999999999877654 4799999998876544445566778999999997764
Q ss_pred -EccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC-C--EEEEEEccCC
Q 001538 85 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSEA 160 (1057)
Q Consensus 85 -G~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d-G--~I~lWdl~~~ 160 (1057)
...+|...||.+|...+.... +.. +........|+| +|++|+..+.. | .|.+||+.++
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~~~----l~~------------~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQLTR----LTN------------GPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred EECCCCCccEEEEECCCCCEEE----CCC------------CCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 566676677877776554431 110 112344568999 68878776653 3 6778888877
Q ss_pred eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCC---cEEEEeCCCC
Q 001538 161 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 232 (1057)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG---~I~lWd~~~~ 232 (1057)
+....... ...+....|+ |||.+|+.++.++ .|.+||+.++
T Consensus 313 ~~~~l~~~------------------------------~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 313 EVRRLTFR------------------------------GGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CEEEeecC------------------------------CCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCC
Confidence 65433221 2345677899 9999999988876 7889998764
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.74 E-value=1e-07 Score=106.83 Aligned_cols=180 Identities=14% Similarity=0.199 Sum_probs=122.2
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecCCCCcccee
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
-++.|-.-|.|.+.|....+...++..+.. -...+|+||.|-|.+. .+.++-.+|.+++|+..-.-......
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~-------i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERL-------INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhccc-------ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 355677778888877655332222111100 1225899999998655 56677889999999873221111100
Q ss_pred eeecCCCceEEec---cCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeE
Q 001538 526 FVLETKSEVHALP---EGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 602 (1057)
Q Consensus 526 ~~~~~~~~~~~i~---~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~ 602 (1057)
......++...|. .+..--|+..+.--.+.|+..+|||||++||+-+.||.++|+|..+..++..+.. .=....
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLL 336 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLL 336 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh---hccceE
Confidence 0001111111111 1111134445555677999999999999999999999999999998877765544 457899
Q ss_pred EEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 603 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 603 sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
|++|+ ||+++|++|+.|--|.||....+.+++.+
T Consensus 337 CvcWS----------------------PDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 337 CVCWS----------------------PDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred EEEEc----------------------CCccEEEecCCcceEEEEEeccceEEEec
Confidence 99999 99999999999999999999999999887
No 232
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.69 E-value=7.7e-07 Score=94.36 Aligned_cols=200 Identities=12% Similarity=0.124 Sum_probs=143.1
Q ss_pred ccccCCcEEEEcCCCeE---EEEE-cCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCC-Cce---eeeecCCCCEEEE
Q 001538 2 CLCRDGRIKVIGGDGIE---GLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-RSL---ACCLKWESNITAF 73 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e---~~~~-~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s-~~~---l~tl~~~~~Ita~ 73 (1057)
|+..+.+|+||...+-+ ...+ ..+...|+.+.+.|...+|++++.|..-.||...+ ++- +--+......+++
T Consensus 27 v~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V 106 (361)
T KOG1523|consen 27 VSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCV 106 (361)
T ss_pred eccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeE
Confidence 45567799999765543 2222 33467899999999999999999999999999844 332 2233567889999
Q ss_pred EEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEE
Q 001538 74 SVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 153 (1057)
Q Consensus 74 ~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~ 153 (1057)
.++|..+.+++|+....|.|+-|+.++. +- .++. ..++..+.|+++.||| ++-+|+.|+.|+.++
T Consensus 107 ~WsP~enkFAVgSgar~isVcy~E~ENd------WW-----VsKh--ikkPirStv~sldWhp--nnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 107 KWSPKENKFAVGSGARLISVCYYEQEND------WW-----VSKH--IKKPIRSTVTSLDWHP--NNVLLAAGSTDGKCR 171 (361)
T ss_pred eecCcCceEEeccCccEEEEEEEecccc------ee-----hhhh--hCCccccceeeeeccC--CcceecccccCccee
Confidence 9999999999999999999999876541 11 1222 1234567899999999 577788899999998
Q ss_pred EEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCC---CC-CCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeC
Q 001538 154 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE---HQ-PEEKEISALCWASSSGSILAVGYIDGDILLWNT 229 (1057)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~-~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~ 229 (1057)
+++.- ++-. .+.|+..+-|++-.++. +- ...+.|..++|+ |.|..|+=.+.|.++.+=|.
T Consensus 172 VfSay----IK~V-----------dekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 172 VFSAY----IKGV-----------DEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred EEEEe----eecc-----------ccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCEeeEecCCCceEEeec
Confidence 88742 1111 11233334443332221 11 236789999999 99999999999999999887
Q ss_pred CCC
Q 001538 230 STT 232 (1057)
Q Consensus 230 ~~~ 232 (1057)
...
T Consensus 236 ~~p 238 (361)
T KOG1523|consen 236 AGP 238 (361)
T ss_pred CCC
Confidence 654
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.69 E-value=1.7e-08 Score=111.07 Aligned_cols=180 Identities=15% Similarity=0.219 Sum_probs=138.9
Q ss_pred cccCCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEE
Q 001538 3 LCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 82 (1057)
Q Consensus 3 gt~dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l 82 (1057)
|.+-|.|..|+-......++..-...|..++|..+..|+ ++...+-+.||| ..|..+|.++-...|..+.|-|.-..|
T Consensus 147 gGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~-AVAQK~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL 224 (545)
T KOG1272|consen 147 GGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFF-AVAQKKYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLL 224 (545)
T ss_pred cCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHH-HhhhhceEEEec-CCCcEEeehhhcCchhhhcccchhhee
Confidence 334444444444444555666666789999999988655 456899999999 468888999988899999999999999
Q ss_pred EEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE
Q 001538 83 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 162 (1057)
Q Consensus 83 ~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~ 162 (1057)
+.+++.| .+--.|+..|+++. .+ ....+.+..+.-+|. +..+=+|..+|+|.+|+....+.
T Consensus 225 ~~~~~~G--~L~Y~DVS~GklVa---~~------------~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 225 VAASEAG--FLKYQDVSTGKLVA---SI------------RTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred eecccCC--ceEEEeechhhhhH---HH------------HccCCccchhhcCCc--cceEEEcCCCceEEecCCCCcch
Confidence 9999999 55556777777661 11 123467888999995 44678899999999999988776
Q ss_pred EEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 163 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
+-.+-. | .++|.++++. ++|.++||.+.|..++|||+....
T Consensus 286 LvKiLc---------H--------------------~g~V~siAv~-~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 286 LVKILC---------H--------------------RGPVSSIAVD-RGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred HHHHHh---------c--------------------CCCcceEEEC-CCCcEEeecccccceeEeeecccc
Confidence 543322 3 7899999999 999999999999999999998753
No 234
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.68 E-value=0.00059 Score=87.22 Aligned_cols=229 Identities=19% Similarity=0.267 Sum_probs=131.5
Q ss_pred CccccCCcEEEE------cCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCC-------------C--c
Q 001538 1 MCLCRDGRIKVI------GGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-------------R--S 59 (1057)
Q Consensus 1 ~vgt~dG~I~v~------g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s-------------~--~ 59 (1057)
++++.+|+|-++ +...+|++-..+ ..|.+++|+||+..|+.++.+++|.+-+-.- | +
T Consensus 91 ~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd--~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~ 168 (928)
T PF04762_consen 91 CIALASGDIILVREDPDPDEDEIEIVGSVD--SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESK 168 (928)
T ss_pred EEEECCceEEEEEccCCCCCceeEEEEEEc--CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCc
Confidence 367889999999 345567666555 4699999999999999999998887754211 1 0
Q ss_pred ee--------eeec-------------------------CCCCEEEEEEecCCcEEEEEcc---CC---cEEEEEEeCCC
Q 001538 60 LA--------CCLK-------------------------WESNITAFSVISGSHFMYIGDE---NG---LMSVIKYDADE 100 (1057)
Q Consensus 60 ~l--------~tl~-------------------------~~~~Ita~~~sp~~~~l~vG~~---~G---~v~v~~~d~~~ 100 (1057)
.+ +.++ ++..-..++|-.||.|+++.+- .| .++|| +.+
T Consensus 169 ~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy--~Re- 245 (928)
T PF04762_consen 169 HVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVY--SRE- 245 (928)
T ss_pred eeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEE--CCC-
Confidence 11 0000 1112346778888999988774 44 33333 332
Q ss_pred CceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC---CEEEEEEccCCeEEEEecCCcccccCCc
Q 001538 101 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGV 177 (1057)
Q Consensus 101 ~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d---G~I~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (1057)
|.|.. . ++ +-.+---+++|.| .|+++++.-+. -.|.+|.- .|-....|. +.
T Consensus 246 G~L~s---t------SE------~v~gLe~~l~WrP--sG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~-----l~--- 299 (928)
T PF04762_consen 246 GELQS---T------SE------PVDGLEGALSWRP--SGNLIASSQRLPDRHDVVFFER-NGLRHGEFT-----LR--- 299 (928)
T ss_pred ceEEe---c------cc------cCCCccCCccCCC--CCCEEEEEEEcCCCcEEEEEec-CCcEeeeEe-----cC---
Confidence 44431 0 01 0112235789999 69877776652 24444431 121111111 10
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCC
Q 001538 178 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 257 (1057)
Q Consensus 178 ~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~ 257 (1057)
. ......|..+.|+ +|+..||....|. |.+|-..+.. .-.|..+.... .
T Consensus 300 ----~-------------~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYH-----------WYLKqei~~~~-~ 348 (928)
T PF04762_consen 300 ----F-------------DPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYH-----------WYLKQEIRFSS-S 348 (928)
T ss_pred ----C-------------CCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCE-----------EEEEEEEEccC-C
Confidence 0 0125688999999 9999999988665 9999986542 33444444332 2
Q ss_pred ccEEEEEeeccCcCCCCCCceEEEecCCCCCCcceEEEEEcCccc
Q 001538 258 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 302 (1057)
Q Consensus 258 ~pI~~l~w~~~~~~~~~~~~~Llv~gg~~~~~~~~ltvl~l~~~~ 302 (1057)
..+..+.|.... ..+|.+...++ .+..++|.|..
T Consensus 349 ~~~~~~~Wdpe~------p~~L~v~t~~g-----~~~~~~~~~~v 382 (928)
T PF04762_consen 349 ESVNFVKWDPEK------PLRLHVLTSNG-----QYEIYDFAWDV 382 (928)
T ss_pred CCCCceEECCCC------CCEEEEEecCC-----cEEEEEEEEEE
Confidence 234448886532 33454443322 25556655554
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.67 E-value=3.4e-06 Score=96.44 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=126.5
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCceeeeecC----CCCEEEEEEe--------------------cCCcEEEEEccCCcE
Q 001538 36 QNQGFLISITNDNEIQVWSLESRSLACCLKW----ESNITAFSVI--------------------SGSHFMYIGDENGLM 91 (1057)
Q Consensus 36 ~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~----~~~Ita~~~s--------------------p~~~~l~vG~~~G~v 91 (1057)
+.+.|++..+.||.+++||..++++...+.. .+.-++..|- -+...++.|...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g-- 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG-- 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc--
Confidence 3455888899999999999999998766632 2322332221 2344678899999
Q ss_pred EEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcc
Q 001538 92 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDL 171 (1057)
Q Consensus 92 ~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~ 171 (1057)
.||.|+...+++. |++.. ..|.++|.++.++-+ .| .+-+++.|+.+..|++.+...++.+..
T Consensus 81 ~v~~ys~~~g~it---~~~st----------~~h~~~v~~~~~~~~-~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~--- 142 (541)
T KOG4547|consen 81 SVLLYSVAGGEIT---AKLST----------DKHYGNVNEILDAQR-LG-CIYSVGADLKVVYILEKEKVIIRIWKE--- 142 (541)
T ss_pred cEEEEEecCCeEE---EEEec----------CCCCCcceeeecccc-cC-ceEecCCceeEEEEecccceeeeeecc---
Confidence 8888988888776 44432 346789999999985 45 599999999999999999999988765
Q ss_pred cccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeec
Q 001538 172 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLEL 251 (1057)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l 251 (1057)
. .+.+.++|.+ |||..+++++ ++|++||+++.+..+
T Consensus 143 ------~--------------------~~~~~sl~is-~D~~~l~~as--~~ik~~~~~~kevv~--------------- 178 (541)
T KOG4547|consen 143 ------Q--------------------KPLVSSLCIS-PDGKILLTAS--RQIKVLDIETKEVVI--------------- 178 (541)
T ss_pred ------C--------------------CCccceEEEc-CCCCEEEecc--ceEEEEEccCceEEE---------------
Confidence 1 6788999999 9999999987 689999998874221
Q ss_pred ccccCCccEEEEEeec
Q 001538 252 SSAERRLPVIVLHWST 267 (1057)
Q Consensus 252 ~~~~~~~pI~~l~w~~ 267 (1057)
....|..||..+.+..
T Consensus 179 ~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 179 TFTGHGSPVRTLSFTT 194 (541)
T ss_pred EecCCCcceEEEEEEE
Confidence 1334667888887765
No 236
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.65 E-value=3.2e-07 Score=97.18 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=121.9
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCCCc-eeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATYPV-FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~~~-l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
++.+++..++.+-.+..|.|+...... ..+.++++ .|...|+.|+|+|.+..+++++.|..-+||.....
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls---------~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS---------EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCCCCceeceehh---------hhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 477888999999999999999887766 33444443 67889999999999999999999999999987432
Q ss_pred CCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEE-EeecCCCC
Q 001538 519 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLF-FTDDISGS 597 (1057)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~-~~~~~~g~ 597 (1057)
.. ..|..++..++..++++.|+|.+..+|+|+....|.||-+++..-=+ ..+...-+
T Consensus 88 ~~----------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi 145 (361)
T KOG1523|consen 88 GT----------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI 145 (361)
T ss_pred Ce----------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence 11 22345666789999999999999999999999999999886543211 11111236
Q ss_pred CCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEE
Q 001538 598 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 647 (1057)
Q Consensus 598 ~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~ 647 (1057)
.+.|++|.|+ |..-+|++|+.|+..+|+
T Consensus 146 rStv~sldWh----------------------pnnVLlaaGs~D~k~rVf 173 (361)
T KOG1523|consen 146 RSTVTSLDWH----------------------PNNVLLAAGSTDGKCRVF 173 (361)
T ss_pred ccceeeeecc----------------------CCcceecccccCcceeEE
Confidence 7889999999 677889999999977766
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=1.9e-06 Score=102.11 Aligned_cols=176 Identities=10% Similarity=0.033 Sum_probs=117.2
Q ss_pred cEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCC---CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEE
Q 001538 8 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 84 (1057)
Q Consensus 8 ~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d---~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~v 84 (1057)
+|.+++.++........+..++...+|+||+.+|+.++.+ ..|.+||+.+++........+.+.+..|+|+++++++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 4777766554333233445678999999999999877644 3699999998876443344566678999999998874
Q ss_pred -EccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC-CC--EEEEEEccCC
Q 001538 85 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 160 (1057)
Q Consensus 85 -G~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~-dG--~I~lWdl~~~ 160 (1057)
...+|...||.+|.+.+.+. .+.. +........|+| +|++|+..+. +| .|.+||+.++
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~----~lt~------------~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLS----RVTN------------HPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred EEccCCCceEEEEECCCCCeE----Eccc------------CCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 55677667888887765543 1111 112345668999 6887777664 33 6777888887
Q ss_pred eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC-C--cEEEEeCCCC
Q 001538 161 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-G--DILLWNTSTT 232 (1057)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D-G--~I~lWd~~~~ 232 (1057)
+....... ........|+ |||+.|+..+.+ | .|.+||+.++
T Consensus 322 ~~~~lt~~------------------------------~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 322 RAERVTFV------------------------------GNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CEEEeecC------------------------------CCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCC
Confidence 75443211 1122356799 999998877653 3 5788898765
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.63 E-value=0.00013 Score=88.78 Aligned_cols=146 Identities=12% Similarity=0.174 Sum_probs=112.4
Q ss_pred EEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEE---E--EEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCc
Q 001538 34 FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNIT---A--FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPY 108 (1057)
Q Consensus 34 F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~It---a--~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~ 108 (1057)
+......++.++.+|.+-+||.....++..++.....+ + +-.++..-+++.|+..|.|-+|.+..+..
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~------- 167 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK------- 167 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-------
Confidence 44445578888999999999999999888887664332 1 22344555889999999888887652211
Q ss_pred ccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEE--EecCCcccccCCccCCCCCCCC
Q 001538 109 NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDS 186 (1057)
Q Consensus 109 ~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~ 186 (1057)
+. ....|.+.+.+|.++- +|.++++.++|.++++|++.+++... -|+ |
T Consensus 168 --p~--------~l~GHeG~iF~i~~s~--dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg----------H-------- 217 (967)
T KOG0974|consen 168 --PI--------RLKGHEGSIFSIVTSL--DGRYIASVSDDRSIRLWPIDSREVLGCTGFG----------H-------- 217 (967)
T ss_pred --cc--------eecccCCceEEEEEcc--CCcEEEEEecCcceeeeecccccccCccccc----------c--------
Confidence 10 1245778899999998 79999999999999999999988765 222 2
Q ss_pred CcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 187 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 187 ~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
...|..++|+ |+ .|+|+++|-+.++|+.+.
T Consensus 218 ------------saRvw~~~~~-~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 218 ------------SARVWACCFL-PN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred ------------cceeEEEEec-cc--eeEEeccceEEEEEeccc
Confidence 7899999999 88 899999999999997654
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.63 E-value=0.00056 Score=78.59 Aligned_cols=150 Identities=16% Similarity=0.246 Sum_probs=97.0
Q ss_pred CcEEEEEC--CCCce--eeeecCCCCEEEEEEecCCcEEEEEcc----CCcEEEEEEeCCCCceeccCcccchhhhhhhc
Q 001538 48 NEIQVWSL--ESRSL--ACCLKWESNITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKA 119 (1057)
Q Consensus 48 ~~I~VWdl--~s~~~--l~tl~~~~~Ita~~~sp~~~~l~vG~~----~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~ 119 (1057)
+.|.+|++ .++++ +..+......+.++++|++++||+..+ .|.|..+.++.+.++|..... ++
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~-~~-------- 83 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS-VP-------- 83 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE-EE--------
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee-ec--------
Confidence 78999888 55554 233334567788999999999999987 468888888877666652111 00
Q ss_pred CCCCCCCCCeEEEEeCcCCCCCeEEEE-ECCCEEEEEEccC-CeEEEE---ecCCcccccCCccCCCCCCCCCcccCCCC
Q 001538 120 GFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSE-AQIIFV---GGGKDLQLKDGVVDSPSEGDSTFLEGISE 194 (1057)
Q Consensus 120 g~~~~~~~~V~sI~~sP~d~g~~lli~-~~dG~I~lWdl~~-~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 194 (1057)
........|+++| ++++|+++ |.+|.|.+|++.+ |.+... +.+... + ...
T Consensus 84 ----~~g~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~--------------g-----~~~ 138 (345)
T PF10282_consen 84 ----SGGSSPCHIAVDP--DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS--------------G-----PNP 138 (345)
T ss_dssp ----ESSSCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE--------------E-----SST
T ss_pred ----cCCCCcEEEEEec--CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC--------------C-----Ccc
Confidence 0134567899999 67777776 5789999999987 544332 211000 0 000
Q ss_pred CCCCCCCeEEEEEecCCCCEEEEEEc-CCcEEEEeCCCC
Q 001538 195 HQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTSTT 232 (1057)
Q Consensus 195 ~~~~~~~Vtsl~ws~pdG~~latg~~-DG~I~lWd~~~~ 232 (1057)
.....+...++.|+ |||+++++... ...|.+|++...
T Consensus 139 ~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 139 DRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp TTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred cccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCC
Confidence 11235678999999 99998877643 357888888554
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=2.3e-06 Score=101.67 Aligned_cols=176 Identities=12% Similarity=0.085 Sum_probs=113.3
Q ss_pred cEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCC---CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEE
Q 001538 8 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 84 (1057)
Q Consensus 8 ~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d---~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~v 84 (1057)
+|.++..++...........++....|+||+.+|+-++.+ ..|.+||+.+++.......++...+.+++|+++++++
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 5666655544322223445678899999999988876643 2588999988875332234455567899999998765
Q ss_pred -EccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC-CC--EEEEEEccCC
Q 001538 85 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 160 (1057)
Q Consensus 85 -G~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~-dG--~I~lWdl~~~ 160 (1057)
...+|+..||.+|.+.+++. .+.. +...+....|+| +|+.|+..+. +| .|.++|+.++
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~~----~lt~------------~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKALT----RITR------------HRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred EEeCCCCeEEEEEECCCCCeE----ECcc------------CCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 57788888888888766544 1111 112346678999 6887777654 33 5677788877
Q ss_pred eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc-CCc--EEEEeCCCC
Q 001538 161 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGD--ILLWNTSTT 232 (1057)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~-DG~--I~lWd~~~~ 232 (1057)
+....... .......+|+ |||++|+..+. ++. |.++|+.++
T Consensus 341 ~~~~Lt~~------------------------------g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 341 KVSRLTFE------------------------------GEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CEEEEecC------------------------------CCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCC
Confidence 76543211 1112346899 99998877655 444 445566554
No 241
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=2.4e-06 Score=101.01 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=105.7
Q ss_pred CeeEEEEEcCCcEEEEEe-CCC--cEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEcc-CCcEEEEEEeCCCCce
Q 001538 28 PYKNLEFLQNQGFLISIT-NDN--EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKL 103 (1057)
Q Consensus 28 ~v~~L~F~~~~~~Lvs~s-~d~--~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~-~G~v~v~~~d~~~~~l 103 (1057)
.+..++|+||+.+|+.+. .++ .|.+||+.++++......+..++...|+|++++|+..+. +|..+||.+|.+.+..
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 355689999999888653 344 588999998876544444567889999999998866554 5677899888876543
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC---CEEEEEEccCCeEEEEecCCcccccCCccCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 180 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d---G~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (1057)
. ++.+ ....+.+..|+| +|++|+....+ ..|.+||+.+++.......
T Consensus 324 ~----~lt~------------~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~------------ 373 (429)
T PRK03629 324 Q----RITW------------EGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT------------ 373 (429)
T ss_pred E----Eeec------------CCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEEeCCC------------
Confidence 3 1111 012345678999 68888776554 3588899988875432211
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCc---EEEEeCCC
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD---ILLWNTST 231 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~---I~lWd~~~ 231 (1057)
....+..|+ |||++|+.++.|+. |.+|++..
T Consensus 374 -------------------~~~~~p~~S-pDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 374 -------------------FLDETPSIA-PNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred -------------------CCCCCceEC-CCCCEEEEEEcCCCceEEEEEECCC
Confidence 112246799 99999999988875 66777743
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=4.7e-07 Score=102.22 Aligned_cols=157 Identities=13% Similarity=0.279 Sum_probs=123.3
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC------------CCEEEEEEecCCcEEEEEccCCcEEEE
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE------------SNITAFSVISGSHFMYIGDENGLMSVI 94 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~------------~~Ita~~~sp~~~~l~vG~~~G~v~v~ 94 (1057)
.++..+...+-.+.|++++.+|.|+.||-+.+..+.++... ..||++.|.-++-.|++|+.+| +|+
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G--~v~ 253 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG--SVL 253 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC--cEE
Confidence 57889999998888888888999999999998887776422 2499999999999999999999 566
Q ss_pred EEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCccccc
Q 001538 95 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLK 174 (1057)
Q Consensus 95 ~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~ 174 (1057)
.||.... .|+.+..+- ...||..+.|.+.|..+ .++..+...++|||-.+|+.....++
T Consensus 254 iyDLRa~----~pl~~kdh~----------~e~pi~~l~~~~~~~q~-~v~S~Dk~~~kiWd~~~Gk~~asiEp------ 312 (703)
T KOG2321|consen 254 IYDLRAS----KPLLVKDHG----------YELPIKKLDWQDTDQQN-KVVSMDKRILKIWDECTGKPMASIEP------ 312 (703)
T ss_pred EEEcccC----CceeecccC----------CccceeeecccccCCCc-eEEecchHHhhhcccccCCceeeccc------
Confidence 6665332 244443211 13589999999986555 66677778999999999998877665
Q ss_pred CCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 175 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
...+..+|+- |++..++++-+++-+..+=++.
T Consensus 313 ------------------------t~~lND~C~~-p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 313 ------------------------TSDLNDFCFV-PGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ------------------------cCCcCceeee-cCCceEEEecCCCcceeEEccc
Confidence 5568889999 9999999999888887776654
No 243
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.60 E-value=2.1e-07 Score=102.67 Aligned_cols=170 Identities=17% Similarity=0.272 Sum_probs=130.4
Q ss_pred CCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC-CCCEEEEEEecCCcEEEE
Q 001538 6 DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYI 84 (1057)
Q Consensus 6 dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~~~Ita~~~sp~~~~l~v 84 (1057)
..-+.||+..|+|.-+.- ...+|..|.|.|..-.|++++..|.++--|+.+|+++..+.. .+.+..++..|-.-.+-+
T Consensus 190 K~y~yvYD~~GtElHClk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~ 268 (545)
T KOG1272|consen 190 KKYVYVYDNNGTELHCLK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL 268 (545)
T ss_pred hceEEEecCCCcEEeehh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEE
Confidence 356889999999977643 346799999999997778888889999999999999998864 588999999999999999
Q ss_pred EccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEE
Q 001538 85 GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF 164 (1057)
Q Consensus 85 G~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~ 164 (1057)
|..+|+|++|.-.... +-+.- .-|.++|.+|++.| .|.++++++-|..|+|||++.-..++
T Consensus 269 GhsnGtVSlWSP~ske-------PLvKi----------LcH~g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKE-------PLVKI----------LCHRGPVSSIAVDR--GGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred cCCCceEEecCCCCcc-------hHHHH----------HhcCCCcceEEECC--CCcEEeecccccceeEeeeccccccc
Confidence 9999999999733211 11111 12578999999999 79999999999999999998665433
Q ss_pred EecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEe
Q 001538 165 VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 228 (1057)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd 228 (1057)
+... .-....++++ ..| .||.+..| .+.+|.
T Consensus 330 t~~t------------------------------p~~a~~ls~S-qkg-lLA~~~G~-~v~iw~ 360 (545)
T KOG1272|consen 330 TYRT------------------------------PHPASNLSLS-QKG-LLALSYGD-HVQIWK 360 (545)
T ss_pred eeec------------------------------CCCccccccc-ccc-ceeeecCC-eeeeeh
Confidence 3221 1245567787 555 46666544 688894
No 244
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=1.1e-06 Score=97.87 Aligned_cols=171 Identities=17% Similarity=0.119 Sum_probs=120.7
Q ss_pred CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC--CCCEEEEEEecCC--cEEEEEccCCcEEEEEEeCC
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW--ESNITAFSVISGS--HFMYIGDENGLMSVIKYDAD 99 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~--~~~Ita~~~sp~~--~~l~vG~~~G~v~v~~~d~~ 99 (1057)
++..-|..+-|...|..|+++++|-.|.|||+.++.....+.. ..+|-...|.|.. .-++....+|.|++-.++..
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 4556799999999999999999999999999999988777743 2456555566643 35777789998887766542
Q ss_pred CCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccC
Q 001538 100 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 179 (1057)
Q Consensus 100 ~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (1057)
.|.... + ....|.++|--++.-|.+ ..-+++.++|+.+.-.|++.+.....+..+ + +
T Consensus 220 -------~~~e~t----~---rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr------~-~- 276 (559)
T KOG1334|consen 220 -------GYVENT----K---RLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCR------E-A- 276 (559)
T ss_pred -------cceecc----e---ecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeee------c-c-
Confidence 233221 1 113456788888888864 555999999999999999888654433321 0 0
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 180 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 180 ~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
++.+.-....++..+.+...+++|+.|--++++|.+..
T Consensus 277 ---------------~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 277 ---------------DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred ---------------CCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 00112256678888455668999999999999998764
No 245
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.55 E-value=0.00012 Score=85.35 Aligned_cols=109 Identities=17% Similarity=0.306 Sum_probs=74.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhh
Q 001538 38 QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 117 (1057)
Q Consensus 38 ~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~ 117 (1057)
+++|+.++.++.|.-+|..+|+.+=.......+.+ ....+++.+|+++.+| .|+.+|..+|++. ++...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~~~~v~v~~~~g--~l~ald~~tG~~~---W~~~~----- 133 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGADGGLVFVGTEKG--EVIALDAEDGKEL---WRAKL----- 133 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEcCCEEEEEcCCC--EEEEEECCCCcEe---eeecc-----
Confidence 45788888999999999999998766655544432 1223578899999999 7777888777665 22110
Q ss_pred hcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecC
Q 001538 118 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 168 (1057)
Q Consensus 118 ~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~ 168 (1057)
...+ .-+|.-.+.+++++..+|.+..||..+|+.+..+..
T Consensus 134 --------~~~~---~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 134 --------SSEV---LSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred --------Ccee---ecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 0111 112211234688888999999999999998766543
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=0.0002 Score=81.75 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=86.5
Q ss_pred CCCEEEEEEecCCCeEEEE--ecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcC
Q 001538 486 RAPVSTLSFCFINSSLAVG--NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS 563 (1057)
Q Consensus 486 ~~~V~~v~fspd~~~Lavg--~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~ 563 (1057)
.++|.++.|+|+++++++. -+=-.|.||+++.+ .++....++=+++-|+|
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------------------------~v~df~egpRN~~~fnp 321 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------------------------PVFDFPEGPRNTAFFNP 321 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----------------------------EeEeCCCCCccceEECC
Confidence 3599999999999988764 44567888887653 24455678889999999
Q ss_pred CCCEEEEEe---CCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEec
Q 001538 564 SGAKLAVGF---ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK 640 (1057)
Q Consensus 564 ~g~~lA~G~---~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~ 640 (1057)
.|++++.++ -.|.+-|||+.+.+++-.... ..-+-..|+ |||.+++++|.
T Consensus 322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----~~tt~~eW~----------------------PdGe~flTATT 374 (566)
T KOG2315|consen 322 HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----ANTTVFEWS----------------------PDGEYFLTATT 374 (566)
T ss_pred CCCEEEEeecCCCCCceEEEeccchhhcccccc-----CCceEEEEc----------------------CCCcEEEEEec
Confidence 999988765 568899999999888776654 234556787 99999999875
Q ss_pred ------CCeEEEEeCCCccee
Q 001538 641 ------DAKISIVGGSSENMI 655 (1057)
Q Consensus 641 ------dg~i~v~d~~tg~~i 655 (1057)
|..++||+.. |.++
T Consensus 375 aPRlrvdNg~Kiwhyt-G~~l 394 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYT-GSLL 394 (566)
T ss_pred cccEEecCCeEEEEec-Ccee
Confidence 4778888753 4443
No 247
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=6.2e-06 Score=97.76 Aligned_cols=175 Identities=16% Similarity=0.133 Sum_probs=109.9
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEE-EEeCCC--cEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDN--EIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 83 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lv-s~s~d~--~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~ 83 (1057)
.+|.+|...+.+.............++|+|++..|+ +.+.++ .|.+||+.+++........+..+..+|+|++++|+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~ 307 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIY 307 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEE
Confidence 356666544322222122223345789999998775 445554 69999999887643223334557789999999887
Q ss_pred EEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC---EEEEEEccC
Q 001538 84 IGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---LVILWDVSE 159 (1057)
Q Consensus 84 vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG---~I~lWdl~~ 159 (1057)
..+ .+|...+|.++.+.+... ++.. .......++|+| +|+.|+....++ .|.+||+.+
T Consensus 308 f~sd~~g~~~iy~~dl~~g~~~----~lt~------------~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 308 FTSDRGGRPQIYRVAASGGSAE----RLTF------------QGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred EEECCCCCceEEEEECCCCCeE----Eeec------------CCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCC
Confidence 665 466677888887655433 1110 011234679999 688887765443 689999988
Q ss_pred CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC---CcEEEEeCCC
Q 001538 160 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTST 231 (1057)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D---G~I~lWd~~~ 231 (1057)
++......+ .......|+ |||++|+....+ +.|.+|++..
T Consensus 370 g~~~~Lt~~-------------------------------~~~~~p~~s-pdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 370 GSVRTLTPG-------------------------------SLDESPSFA-PNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCeEECCCC-------------------------------CCCCCceEC-CCCCEEEEEEecCCceEEEEEECCC
Confidence 876532111 112345799 999988777654 3577777743
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.49 E-value=0.00079 Score=76.16 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=84.6
Q ss_pred EEec-CCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEec---cCCcceeeEEEeeCCCCeEEEEEcCCCCEE
Q 001538 493 SFCF-INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALP---EGKISLCRAVFSLVNSPVRALQFTSSGAKL 568 (1057)
Q Consensus 493 ~fsp-d~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~g~~~~~~~~~h~~~ItsLa~S~~g~~l 568 (1057)
.|.+ +++++.+..+ |+|.+.|+......... .+..+. .++|. ..+.+.-++++++|+++
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------~~~~~~~~~~~~~w--------rP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------AIEAFTEAEKADGW--------RPGGWQQVAYHRARDRI 262 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------eeeecccccccccc--------CCCcceeEEEcCCCCEE
Confidence 4455 7888877777 89998887554321100 000000 00111 23334449999999998
Q ss_pred EEEe----------CCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCc-EEEE
Q 001538 569 AVGF----------ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEE-VIIV 637 (1057)
Q Consensus 569 A~G~----------~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~-~L~s 637 (1057)
.+.. ..+.|.++|..+++++..... ...+..++|+ +|++ +|++
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS----------------------~Dgkp~lyv 316 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVS----------------------QDAKPLLYA 316 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEEC----------------------CCCCeEEEE
Confidence 8853 224799999999999988765 4578899998 8888 7887
Q ss_pred Ee-cCCeEEEEeCCCcceeecC
Q 001538 638 LF-KDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 638 gt-~dg~i~v~d~~tg~~i~~~ 658 (1057)
.. .++.|.++|..+++.+.+-
T Consensus 317 tn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 317 LSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eCCCCCcEEEEECcCCeEEeee
Confidence 76 6789999999999988764
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=0.0005 Score=79.87 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=89.3
Q ss_pred cCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCce------e---------eeec-CCCCEEEEEEecCCcEEEEEc
Q 001538 23 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL------A---------CCLK-WESNITAFSVISGSHFMYIGD 86 (1057)
Q Consensus 23 ~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~------l---------~tl~-~~~~Ita~~~sp~~~~l~vG~ 86 (1057)
.|......+++|..+++|+++++.||-++|..+.+... + .++. +.+.|..+.|...-.-|-+.+
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 56667788999999999999999999999999877442 1 1111 235677788877777888888
Q ss_pred cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE
Q 001538 87 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 162 (1057)
Q Consensus 87 ~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~ 162 (1057)
.+|.|-||.+--..+. +-.|.+ -..+.|++++|+. +|+++.|+|+||.|.+=.+..+++
T Consensus 91 t~GlIiVWmlykgsW~----EEMiNn-----------RnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGNRI 149 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWC----EEMINN-----------RNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGNRI 149 (1189)
T ss_pred CCceEEEEeeecccHH----HHHhhC-----------cCccEEEEEEEcC--CCcEEEEEEccCCEEEEeecccee
Confidence 9998888875332211 011111 1246799999999 799999999999997766655443
No 250
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=6e-07 Score=100.68 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=123.6
Q ss_pred CCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCC--CeEEEEe
Q 001538 428 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN--SSLAVGN 505 (1057)
Q Consensus 428 l~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~--~~Lavg~ 505 (1057)
|+|+...+..+ +...+|.+|++|+.|-.+.|||..... +++.+.+ ||...|.++.|-|.. +.+++|.
T Consensus 46 L~GH~GCVN~L-eWn~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~T--------gHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 46 LTGHTGCVNCL-EWNADGELLASGSDDTRLIVWDPFEYK--LLHSIST--------GHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hccccceecce-eecCCCCEEeecCCcceEEeecchhcc--eeeeeec--------ccccceeEEeeeccCCCeEEEecc
Confidence 67777666555 788999999999999999999998554 4444432 788899999999854 5889999
Q ss_pred cCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC-CEEEEEeCCceEEEEeCCC
Q 001538 506 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNL 584 (1057)
Q Consensus 506 ~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g-~~lA~G~~dG~V~vwDi~~ 584 (1057)
.|..|+|||+...+..+..+.+ -.+...+..|...|.-|+-.|++ ..+-++++||+++=+|++.
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~---------------~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGM---------------EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred CcceEEEEecccccccccccCc---------------cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999999999764332211000 01123556799999999999999 7789999999999999987
Q ss_pred CeEEE-Eeec----CCCCC--CCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 585 LSVLF-FTDD----ISGSS--SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 585 ~~~l~-~~~~----~~g~~--~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
+..-. ...+ ..-+. -...+++.++ ..-.+|++|+.|--.++||.
T Consensus 180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp---------------------~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 180 PHVCNPDEDCPSILVNYNPQLIELKCLTISP---------------------SRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred CccCCccccccHHHHHhchhhheeeeeeecC---------------------CCCceEEecCCCchhhhhhh
Confidence 53211 0000 00001 1223444441 23468999999999999994
No 251
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=1.4e-05 Score=86.12 Aligned_cols=177 Identities=17% Similarity=0.198 Sum_probs=124.2
Q ss_pred ccccCCcEEEEcCCCeE-EEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCcee------------eeec--C
Q 001538 2 CLCRDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA------------CCLK--W 66 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e-~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l------------~tl~--~ 66 (1057)
||+.|..|++|...-.+ ..+.++++..|++|+|-|..+--++++.-+.|-+|.....-.. ..++ .
T Consensus 115 va~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pg 194 (445)
T KOG2139|consen 115 VATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPG 194 (445)
T ss_pred hhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCC
Confidence 68999999999876543 4567888899999999998877777788889999997542211 1122 2
Q ss_pred CCCEEEEEEecCCcEEEEEcc-CCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEE
Q 001538 67 ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 145 (1057)
Q Consensus 67 ~~~Ita~~~sp~~~~l~vG~~-~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli 145 (1057)
+..||++.+.+|+..++.++- +..|.|| |++.+... |.. + ...+.+.-+.|+| +|..|+.
T Consensus 195 h~pVtsmqwn~dgt~l~tAS~gsssi~iW--dpdtg~~~--pL~--~-----------~glgg~slLkwSP--dgd~lfa 255 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTILVTASFGSSSIMIW--DPDTGQKI--PLI--P-----------KGLGGFSLLKWSP--DGDVLFA 255 (445)
T ss_pred CceeeEEEEcCCCCEEeecccCcceEEEE--cCCCCCcc--ccc--c-----------cCCCceeeEEEcC--CCCEEEE
Confidence 358999999999998887664 3444555 55554443 111 1 1245688999999 7889999
Q ss_pred EECCCEEEEEEccCCeEE-EEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcE
Q 001538 146 AYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 224 (1057)
Q Consensus 146 ~~~dG~I~lWdl~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I 224 (1057)
+.-|++.+||......-. .-.-+ .+.|..+||+ |+|++|+-... |+=
T Consensus 256 At~davfrlw~e~q~wt~erw~lg------------------------------sgrvqtacWs-pcGsfLLf~~s-gsp 303 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILG------------------------------SGRVQTACWS-PCGSFLLFACS-GSP 303 (445)
T ss_pred ecccceeeeehhcccceecceecc------------------------------CCceeeeeec-CCCCEEEEEEc-CCc
Confidence 999999999976433211 11111 4589999999 99998766643 444
Q ss_pred EEEeC
Q 001538 225 LLWNT 229 (1057)
Q Consensus 225 ~lWd~ 229 (1057)
+++.+
T Consensus 304 ~lysl 308 (445)
T KOG2139|consen 304 RLYSL 308 (445)
T ss_pred eEEEE
Confidence 55555
No 252
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=1.2e-05 Score=95.47 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=111.0
Q ss_pred CCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEE-EEeCCCc--EEEEECCCCceeeeecCCCCEEEEEEecCCcEE
Q 001538 6 DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNE--IQVWSLESRSLACCLKWESNITAFSVISGSHFM 82 (1057)
Q Consensus 6 dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lv-s~s~d~~--I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l 82 (1057)
+.+|++|...+.+..........+...+|+||+..|+ +.+.++. |.+||+.++.+..-....+..+...++|+++++
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEE
Confidence 3567777654433322223334567889999998765 4555544 777899888764433344556788999999988
Q ss_pred EEEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC-C--EEEEEEcc
Q 001538 83 YIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVS 158 (1057)
Q Consensus 83 ~vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d-G--~I~lWdl~ 158 (1057)
+..+ .+|...||.+|.+.+... ++.. ....+....|+| +|++|+....+ + .|.+||+.
T Consensus 305 ~f~s~~~g~~~Iy~~d~~g~~~~----~lt~------------~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 305 VFESDRSGSPQLYVMNADGSNPR----RISF------------GGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred EEEECCCCCCeEEEEECCCCCeE----Eeec------------CCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECC
Confidence 7765 566667888877654433 1111 112355678999 68888776543 2 67888886
Q ss_pred CCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCC------cEEEEeCCCC
Q 001538 159 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG------DILLWNTSTT 232 (1057)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG------~I~lWd~~~~ 232 (1057)
.+... .+.. ...+....|+ |||++|+..+.++ .|.+.|+.++
T Consensus 367 ~~~~~-~lt~------------------------------~~~~~~p~~s-pDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 367 GSGER-ILTS------------------------------GFLVEGPTWA-PNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCceE-eccC------------------------------CCCCCCCeEC-CCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 55432 2211 1124567899 9999987765532 4666676543
No 253
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=6.8e-07 Score=100.26 Aligned_cols=124 Identities=13% Similarity=0.089 Sum_probs=93.3
Q ss_pred eecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEE
Q 001538 481 EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ 560 (1057)
Q Consensus 481 ~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa 560 (1057)
++.||.+.|+|++|+.+|.+|++|+.|-.+.|||.-..+. ++. .-.+|.+.|-|+.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl-------------lhs-----------I~TgHtaNIFsvK 100 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL-------------LHS-----------ISTGHTANIFSVK 100 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcce-------------eee-----------eecccccceeEEe
Confidence 4569999999999999999999999999999999754332 222 2337999999999
Q ss_pred EcC--CCCEEEEEeCCceEEEEeCCCCeE-------EEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCC
Q 001538 561 FTS--SGAKLAVGFECGRVAVLDMNLLSV-------LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPA 631 (1057)
Q Consensus 561 ~S~--~g~~lA~G~~dG~V~vwDi~~~~~-------l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d 631 (1057)
|-| +.+.|++|..|..|+|+|+...+- .-+..+..-|...|..|+-. |.
T Consensus 101 FvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~----------------------p~ 158 (758)
T KOG1310|consen 101 FVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA----------------------PN 158 (758)
T ss_pred eeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecC----------------------CC
Confidence 988 456899999999999999974211 11111112255555555544 44
Q ss_pred C-cEEEEEecCCeEEEEeCC
Q 001538 632 E-EVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 632 ~-~~L~sgt~dg~i~v~d~~ 650 (1057)
+ ..+.+++.||+|+-+|..
T Consensus 159 ~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 159 GPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred CCceEEEecCCcceeeeccc
Confidence 5 679999999999999964
No 254
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.32 E-value=8e-06 Score=89.54 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=116.4
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCc--eeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPV--FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~--l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
.++.+++++.+..+...-+.+..... .+++-.. .-..+-+++.|..+.....++..-|.++-++.-..
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~----------~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS----------CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe----------ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 56777777777666665555543322 1111110 11235677888888888888888888877776432
Q ss_pred CCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCC
Q 001538 519 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 598 (1057)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~ 598 (1057)
.. + +-....+|-+-++.+++|||++++.+++.|+.|+|-.+-..-++..+- -||.
T Consensus 140 ~~-~----------------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc--lGH~ 194 (390)
T KOG3914|consen 140 DS-G----------------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC--LGHK 194 (390)
T ss_pred cc-c----------------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc--cccH
Confidence 11 0 012345799999999999999999999999999999988777776653 4899
Q ss_pred CCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 599 SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 599 ~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
.-|..++.. ++..|++|+-|++|++||..+|..+...
T Consensus 195 eFVS~isl~-----------------------~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 195 EFVSTISLT-----------------------DNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred hheeeeeec-----------------------cCceeeecCCCCcEEEEecccCCccccc
Confidence 999998874 4666999999999999999999988655
No 255
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=1.8e-05 Score=93.53 Aligned_cols=165 Identities=11% Similarity=0.084 Sum_probs=103.5
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEE-EEeCCCcEEEEE--CCCCceeeeec-CCCCEEEEEEecCCcEE
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVWS--LESRSLACCLK-WESNITAFSVISGSHFM 82 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lv-s~s~d~~I~VWd--l~s~~~l~tl~-~~~~Ita~~~sp~~~~l 82 (1057)
.+|++|...+.+..........+....|+||+..|+ +.+.++..+||. +.++.. ..+. ..+..+...|+|++++|
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l 298 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSI 298 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEE
Confidence 357777654333222222223456889999998776 456677766665 555543 3332 33456778899999988
Q ss_pred EEEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC---EEEEEEcc
Q 001538 83 YIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---LVILWDVS 158 (1057)
Q Consensus 83 ~vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG---~I~lWdl~ 158 (1057)
+..+ .+|...||.++.+.+... ++.. .........|+| +|++|+....++ .|.+||+.
T Consensus 299 ~f~s~~~g~~~Iy~~~~~~g~~~----~lt~------------~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 299 YFTSDRGGAPQIYRMPASGGAAQ----RVTF------------TGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred EEEecCCCCcEEEEEECCCCceE----EEec------------CCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECC
Confidence 7654 457788999887654432 1110 011233568999 688887766554 68999999
Q ss_pred CCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCC
Q 001538 159 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 222 (1057)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG 222 (1057)
+++....... .......|+ |||++|+....++
T Consensus 361 ~g~~~~lt~~-------------------------------~~~~~p~~s-pdg~~l~~~~~~~ 392 (427)
T PRK02889 361 TGQVTALTDT-------------------------------TRDESPSFA-PNGRYILYATQQG 392 (427)
T ss_pred CCCeEEccCC-------------------------------CCccCceEC-CCCCEEEEEEecC
Confidence 8876533211 112456899 9999988877654
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=4.1e-05 Score=90.28 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=98.3
Q ss_pred CeeEEEEEcCCcEEEEEeC-CC----cEEEEECCCC---ceeeeecCC-CCEEEEEEecCCcEEEEEc-cCCcEEEEEEe
Q 001538 28 PYKNLEFLQNQGFLISITN-DN----EIQVWSLESR---SLACCLKWE-SNITAFSVISGSHFMYIGD-ENGLMSVIKYD 97 (1057)
Q Consensus 28 ~v~~L~F~~~~~~Lvs~s~-d~----~I~VWdl~s~---~~l~tl~~~-~~Ita~~~sp~~~~l~vG~-~~G~v~v~~~d 97 (1057)
.....+|+|||.+|+.++. +| .+.+|++..+ ......... +..+..+++|++++|+..+ .+|...+|.++
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 3446789999988887653 22 3445787653 222222222 3456789999999877654 57777888776
Q ss_pred CCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC---CEEEEEEccCCeEEEEecCCccccc
Q 001538 98 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLK 174 (1057)
Q Consensus 98 ~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d---G~I~lWdl~~~~~~~~~~~~~~~~~ 174 (1057)
.+...-. +..+.. ....+....|+| +|++|+....+ ..|.+||+.+++.......
T Consensus 312 ~~~~g~~--~~~lt~------------~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~------ 369 (428)
T PRK01029 312 IDPEGQS--PRLLTK------------KYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS------ 369 (428)
T ss_pred Ccccccc--eEEecc------------CCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC------
Confidence 5421000 111110 123456788999 68888766543 3789999998876543221
Q ss_pred CCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc---CCcEEEEeCCCC
Q 001538 175 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI---DGDILLWNTSTT 232 (1057)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~---DG~I~lWd~~~~ 232 (1057)
...+....|+ |||++|+.... .+.|.+||+.++
T Consensus 370 ------------------------~~~~~~p~wS-pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 370 ------------------------PENKESPSWA-IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ------------------------CCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCC
Confidence 1234568899 99998875443 346888888665
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.30 E-value=5.8e-06 Score=99.98 Aligned_cols=148 Identities=9% Similarity=0.022 Sum_probs=115.5
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
++...-.+++|+.-|.|-+|+..... .++ .+.||.+.|-++.|+-||+++++.++|-++|+|++...+.
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn--------~p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDN--------KPI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccC--------Ccc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc
Confidence 34445578899999999999976221 111 3558999999999999999999999999999999987655
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCC-CC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS-SS 599 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~-~~ 599 (1057)
.+ .+.-+|+..|..++|.|+ .++++++|-+.++|+.....+- . ..+| ..
T Consensus 210 ~~------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~---y~~h~g~ 259 (967)
T KOG0974|consen 210 LG------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-V---YDEHSGK 259 (967)
T ss_pred cC------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh-h---hhhhhhc
Confidence 32 123379999999999998 8999999999999977654332 2 1223 35
Q ss_pred CeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 600 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 600 ~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
.|..++.. ++..+++++++||.+++||..+
T Consensus 260 ~iw~~~~~----------------------~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 260 GIWKIAVP----------------------IGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceeEEEEc----------------------CCceEEEeeccCcchhhhhhhc
Confidence 67888876 5677899999999999999654
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.29 E-value=0.0007 Score=78.80 Aligned_cols=148 Identities=14% Similarity=0.189 Sum_probs=86.3
Q ss_pred CccccCCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCc
Q 001538 1 MCLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSH 80 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~ 80 (1057)
|+++.+|.|..|.....+.+-.......+.. ....+++.++.++.++.+..||..+|+++-.....+.+.+.-.. .++
T Consensus 69 ~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~ 146 (377)
T TIGR03300 69 YAADADGTVVALDAETGKRLWRVDLDERLSG-GVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANG 146 (377)
T ss_pred EEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-ECC
Confidence 4667778888887543333322222222211 11224557888889999999999999987666555544432222 356
Q ss_pred EEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCC
Q 001538 81 FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 160 (1057)
Q Consensus 81 ~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~ 160 (1057)
.+++++.+| .|..+|..+++.. ++..... .... ......|+. .+..++++..+|.+..+|+.+|
T Consensus 147 ~v~v~~~~g--~l~a~d~~tG~~~---W~~~~~~--~~~~-~~~~~sp~~--------~~~~v~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 147 LVVVRTNDG--RLTALDAATGERL---WTYSRVT--PALT-LRGSASPVI--------ADGGVLVGFAGGKLVALDLQTG 210 (377)
T ss_pred EEEEECCCC--eEEEEEcCCCcee---eEEccCC--Ccee-ecCCCCCEE--------ECCEEEEECCCCEEEEEEccCC
Confidence 888899999 6667777766654 2221100 0000 000112221 1235788888899999999999
Q ss_pred eEEEEe
Q 001538 161 QIIFVG 166 (1057)
Q Consensus 161 ~~~~~~ 166 (1057)
+.+...
T Consensus 211 ~~~W~~ 216 (377)
T TIGR03300 211 QPLWEQ 216 (377)
T ss_pred CEeeee
Confidence 876543
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00011 Score=84.51 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=115.2
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceee--------eeecCCCCCEEEEEE----ecCCCeEEEEecCccEEEE
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQG--------IEVAGSRAPVSTLSF----CFINSSLAVGNEFGLVYIY 513 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~--------i~l~~~~~~V~~v~f----spd~~~Lavg~~dG~V~l~ 513 (1057)
.+++....||.+|+||.....+++-+.-..+..+ ..++.......++.+ +.|...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 4677788999999999988775443322211111 000011111111111 1234467778888889888
Q ss_pred EecCCCCccceeeeecCCCceEEeccCCcceeeEEE--eeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEe
Q 001538 514 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF--SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 591 (1057)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~--~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~ 591 (1057)
+...++.. ..+ ..|.+.|+++.++.+-..|-+++.|+.+..|+.....++...
T Consensus 86 s~~~g~it-------------------------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 86 SVAGGEIT-------------------------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred EecCCeEE-------------------------EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee
Confidence 87654331 122 359999999999999889999999999999999998887766
Q ss_pred ecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecCcccc
Q 001538 592 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHL 662 (1057)
Q Consensus 592 ~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~i~p 662 (1057)
.. ....+.+++++ ||+.+|++++ ++|++||.++++++-.++-|+
T Consensus 141 ~~---~~~~~~sl~is----------------------~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~ 184 (541)
T KOG4547|consen 141 KE---QKPLVSSLCIS----------------------PDGKILLTAS--RQIKVLDIETKEVVITFTGHG 184 (541)
T ss_pred cc---CCCccceEEEc----------------------CCCCEEEecc--ceEEEEEccCceEEEEecCCC
Confidence 55 66778899988 8888888776 689999999999887774433
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=0.00037 Score=79.22 Aligned_cols=85 Identities=13% Similarity=0.243 Sum_probs=63.6
Q ss_pred cEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeC-----------CCcEEEEECCCCceeeeecC---CCCEE-E
Q 001538 8 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-----------DNEIQVWSLESRSLACCLKW---ESNIT-A 72 (1057)
Q Consensus 8 ~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~-----------d~~I~VWdl~s~~~l~tl~~---~~~It-a 72 (1057)
-|.+||+.....+....|. .|.++.|+|+..|||+-+. ...|.|||+.+|.+..++.. +..++ -
T Consensus 232 GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~ 310 (698)
T KOG2314|consen 232 GIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPI 310 (698)
T ss_pred ceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccce
Confidence 4778999877665555553 4999999999999998663 25799999999999888754 22232 4
Q ss_pred EEEecCCcEEEEEccCCcEEEE
Q 001538 73 FSVISGSHFMYIGDENGLMSVI 94 (1057)
Q Consensus 73 ~~~sp~~~~l~vG~~~G~v~v~ 94 (1057)
+-++.+.+|++--..++ |+|+
T Consensus 311 frWS~DdKy~Arm~~~s-isIy 331 (698)
T KOG2314|consen 311 FRWSHDDKYFARMTGNS-ISIY 331 (698)
T ss_pred EEeccCCceeEEeccce-EEEE
Confidence 78999999998766665 3443
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=0.0022 Score=70.14 Aligned_cols=198 Identities=14% Similarity=0.141 Sum_probs=121.9
Q ss_pred Ccccc----CCcEEEEcCCCeEEEE----EcCCCCCeeEEEEEcCCcEEEEEeC---CCcEEEEECCC--Cce--eeeec
Q 001538 1 MCLCR----DGRIKVIGGDGIEGLL----ISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLES--RSL--ACCLK 65 (1057)
Q Consensus 1 ~vgt~----dG~I~v~g~~~~e~~~----~~~~~~~v~~L~F~~~~~~Lvs~s~---d~~I~VWdl~s--~~~--l~tl~ 65 (1057)
+|||. +..|++|.-+.-...+ ........+.|+|.|++++|.++.. +|.|..+.++. |++ +....
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~ 85 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT 85 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc
Confidence 35664 4778998655222211 2223345889999999999998874 47888877764 564 22222
Q ss_pred CCC-CEEEEEEecCCcEEEEEcc-CCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeE
Q 001538 66 WES-NITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 143 (1057)
Q Consensus 66 ~~~-~Ita~~~sp~~~~l~vG~~-~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~l 143 (1057)
.++ .-+.+++++++++++++.- .|.|.|..+..+ |.+....-.+. +. ......+.....+-...+.| ++++
T Consensus 86 ~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~-h~--g~~p~~rQ~~~h~H~a~~tP--~~~~- 158 (346)
T COG2706 86 LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVK-HT--GSGPHERQESPHVHSANFTP--DGRY- 158 (346)
T ss_pred cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC-Cccccceeeee-cC--CCCCCccccCCccceeeeCC--CCCE-
Confidence 233 3388999999999998774 466777766544 44431000010 00 00000111133377888999 6874
Q ss_pred EEEECCC--EEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc-
Q 001538 144 LIAYENA--LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI- 220 (1057)
Q Consensus 144 li~~~dG--~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~- 220 (1057)
+++.+=| .|.+|++.+|++...-.. .+ .+ ...-..+.|| |||++..+..+
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~-------~v------~~-------------G~GPRHi~FH-pn~k~aY~v~EL 211 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPA-------EV------KP-------------GAGPRHIVFH-PNGKYAYLVNEL 211 (346)
T ss_pred EEEeecCCceEEEEEcccCcccccccc-------cc------CC-------------CCCcceEEEc-CCCcEEEEEecc
Confidence 4444433 677999998887644333 00 11 2344689999 99999877766
Q ss_pred CCcEEEEeCCCC
Q 001538 221 DGDILLWNTSTT 232 (1057)
Q Consensus 221 DG~I~lWd~~~~ 232 (1057)
+++|.+|.....
T Consensus 212 ~stV~v~~y~~~ 223 (346)
T COG2706 212 NSTVDVLEYNPA 223 (346)
T ss_pred CCEEEEEEEcCC
Confidence 899999999874
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.19 E-value=0.0047 Score=69.23 Aligned_cols=177 Identities=19% Similarity=0.276 Sum_probs=119.1
Q ss_pred cCCcEEEEcCC--CeEEEEEc-CC---------CCCeeEEE-EEc-CCcEEEEEeCCCcEEEEECCCCceeeeecCCCCE
Q 001538 5 RDGRIKVIGGD--GIEGLLIS-PS---------QLPYKNLE-FLQ-NQGFLISITNDNEIQVWSLESRSLACCLKWESNI 70 (1057)
Q Consensus 5 ~dG~I~v~g~~--~~e~~~~~-~~---------~~~v~~L~-F~~-~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~I 70 (1057)
..|.|.+|... ++|.+-.- |. -.|+++|. |+. +|.+++.+| -|...|.+.-.+-.+ .+..++.|
T Consensus 285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~i-qv~~~~~V 362 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSI-QVGKKGGV 362 (668)
T ss_pred cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeE-EcCCCCce
Confidence 45778888653 44443221 21 24677777 765 444666665 455555554333322 23455678
Q ss_pred EEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC
Q 001538 71 TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 150 (1057)
Q Consensus 71 ta~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG 150 (1057)
.-..+..+.+-+++|+.+|. .+-.||.+.+.+. ++. +..+.|.++..+| +|+.++++....
T Consensus 363 rY~r~~~~~e~~vigt~dgD-~l~iyd~~~~e~k----r~e------------~~lg~I~av~vs~--dGK~~vvaNdr~ 423 (668)
T COG4946 363 RYRRIQVDPEGDVIGTNDGD-KLGIYDKDGGEVK----RIE------------KDLGNIEAVKVSP--DGKKVVVANDRF 423 (668)
T ss_pred EEEEEccCCcceEEeccCCc-eEEEEecCCceEE----Eee------------CCccceEEEEEcC--CCcEEEEEcCce
Confidence 88777778888999999994 3444555544433 111 1245799999999 799899999999
Q ss_pred EEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCC----cEEE
Q 001538 151 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG----DILL 226 (1057)
Q Consensus 151 ~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG----~I~l 226 (1057)
.+-+.|+.+|.+...= +.+..-|+...|| ||+++||=+.-+| .|++
T Consensus 424 el~vididngnv~~id-----------------------------kS~~~lItdf~~~-~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 424 ELWVIDIDNGNVRLID-----------------------------KSEYGLITDFDWH-PNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred EEEEEEecCCCeeEec-----------------------------ccccceeEEEEEc-CCceeEEEecCcceeeeeEEE
Confidence 9999999999775321 1236789999999 9999999876664 7899
Q ss_pred EeCCCC
Q 001538 227 WNTSTT 232 (1057)
Q Consensus 227 Wd~~~~ 232 (1057)
+|+.++
T Consensus 474 ydm~~~ 479 (668)
T COG4946 474 YDMDGG 479 (668)
T ss_pred EecCCC
Confidence 999775
No 263
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.18 E-value=7.5e-05 Score=88.14 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=105.0
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEE-EeCC--CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLIS-ITND--NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 83 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs-~s~d--~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~ 83 (1057)
.+|++|...+.+..........+..++|+|++..|+. .+.+ ..|.+||+.++............+...++|++++|+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~ 293 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIA 293 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEE
Confidence 4678886543322222222344567899999987764 3433 368899998876543333344455678999999887
Q ss_pred EEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC---EEEEEEccC
Q 001538 84 IGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---LVILWDVSE 159 (1057)
Q Consensus 84 vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG---~I~lWdl~~ 159 (1057)
... ..|...||.+|...++.. .+.. +...+..+.|+| +|++++.+..++ .|.+||+.+
T Consensus 294 ~~s~~~g~~~iy~~d~~~~~~~----~l~~------------~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 294 FTSDRGGSPQIYMMDADGGEVR----RLTF------------RGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EEECCCCCceEEEEECCCCCEE----Eeec------------CCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCC
Confidence 654 456667887777654432 1110 122356778999 688888888776 889999987
Q ss_pred CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCC
Q 001538 160 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 222 (1057)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG 222 (1057)
+........ .......|+ |||++|+..+.++
T Consensus 356 ~~~~~l~~~-------------------------------~~~~~p~~s-pdg~~l~~~~~~~ 386 (417)
T TIGR02800 356 GGERVLTDT-------------------------------GLDESPSFA-PNGRMILYATTRG 386 (417)
T ss_pred CCeEEccCC-------------------------------CCCCCceEC-CCCCEEEEEEeCC
Confidence 654332211 112244799 9999998887765
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.16 E-value=0.0012 Score=75.74 Aligned_cols=191 Identities=16% Similarity=0.178 Sum_probs=118.5
Q ss_pred cCCcEEEEcCC----CeEEEEEcC-CCCCeeEEEEEcCCcEEEEEe-CCCcEEEEECCC-Cceeee---ec---------
Q 001538 5 RDGRIKVIGGD----GIEGLLISP-SQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLES-RSLACC---LK--------- 65 (1057)
Q Consensus 5 ~dG~I~v~g~~----~~e~~~~~~-~~~~v~~L~F~~~~~~Lvs~s-~d~~I~VWdl~s-~~~l~t---l~--------- 65 (1057)
.+|.|..|.-+ ..+.+-..+ ....-.++++.+++++|+++. .+|+|.++++.. +.+... +.
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence 46788877532 233333333 344556999999999999988 579999999987 554322 21
Q ss_pred --CCCCEEEEEEecCCcEEEEEcc-CCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCe
Q 001538 66 --WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 142 (1057)
Q Consensus 66 --~~~~Ita~~~sp~~~~l~vG~~-~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~ 142 (1057)
......++.++|+++++++.+- ...|.++.++...++|... -.+ .........++.|+| +|++
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~-~~~-----------~~~~G~GPRh~~f~p--dg~~ 205 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPV-DSI-----------KVPPGSGPRHLAFSP--DGKY 205 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEE-EEE-----------ECSTTSSEEEEEE-T--TSSE
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEe-ecc-----------ccccCCCCcEEEEcC--CcCE
Confidence 2256789999999999998654 3445555555544445410 000 112245689999999 6888
Q ss_pred EEEEECC-CEEEEEEcc--CCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001538 143 VLIAYEN-ALVILWDVS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 219 (1057)
Q Consensus 143 lli~~~d-G~I~lWdl~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~ 219 (1057)
+.+..+. +.|.+|++. ++.+.....-. .++ ... ........++++ |||++|.++.
T Consensus 206 ~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~------~~~---~~~------------~~~~~~~~i~is-pdg~~lyvsn 263 (345)
T PF10282_consen 206 AYVVNELSNTVSVFDYDPSDGSLTEIQTIS------TLP---EGF------------TGENAPAEIAIS-PDGRFLYVSN 263 (345)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEE------SCE---TTS------------CSSSSEEEEEE--TTSSEEEEEE
T ss_pred EEEecCCCCcEEEEeecccCCceeEEEEee------ecc---ccc------------cccCCceeEEEe-cCCCEEEEEe
Confidence 8888774 689999998 55443221110 000 100 002367789999 9999877765
Q ss_pred -cCCcEEEEeCCC
Q 001538 220 -IDGDILLWNTST 231 (1057)
Q Consensus 220 -~DG~I~lWd~~~ 231 (1057)
.+++|.++++..
T Consensus 264 r~~~sI~vf~~d~ 276 (345)
T PF10282_consen 264 RGSNSISVFDLDP 276 (345)
T ss_dssp CTTTEEEEEEECT
T ss_pred ccCCEEEEEEEec
Confidence 467899999943
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.15 E-value=0.00042 Score=78.38 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=118.9
Q ss_pred cCCcEEEEcCCCeEEEEEcCCCC--------CeeEEEEEcCCcEEEEEe-C-CCcEEEEECCCCceeeeecCCCCEEEEE
Q 001538 5 RDGRIKVIGGDGIEGLLISPSQL--------PYKNLEFLQNQGFLISIT-N-DNEIQVWSLESRSLACCLKWESNITAFS 74 (1057)
Q Consensus 5 ~dG~I~v~g~~~~e~~~~~~~~~--------~v~~L~F~~~~~~Lvs~s-~-d~~I~VWdl~s~~~l~tl~~~~~Ita~~ 74 (1057)
+++.|.||+....+.+-..+... .-..+++++|+++|+... + ++.|.|.|+.+++.+..+..++....+.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~ 154 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP 154 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 78999999988777775554321 123789999999888766 4 7999999999999887664322111111
Q ss_pred E----------------------------------------------ec-CCcEEEEEccCCcEEEEEEeCCCCceeccC
Q 001538 75 V----------------------------------------------IS-GSHFMYIGDENGLMSVIKYDADEGKLFQLP 107 (1057)
Q Consensus 75 ~----------------------------------------------sp-~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~ 107 (1057)
. .+ ++.++++..+ |+|++.++..+.-. ...+
T Consensus 155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~-~~~~ 232 (352)
T TIGR02658 155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAK-FLPA 232 (352)
T ss_pred ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcce-ecce
Confidence 1 12 4555555555 54444432211100 0001
Q ss_pred cccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC----------CCEEEEEEccCCeEEEEecCCcccccCCc
Q 001538 108 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVSEAQIIFVGGGKDLQLKDGV 177 (1057)
Q Consensus 108 ~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~----------dG~I~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (1057)
+.+.. ..+. ...-....+.-++++| +|+++.++.. .+.|.++|..+++++..+.-
T Consensus 233 ~~~~~--~~~~--~~~wrP~g~q~ia~~~--dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--------- 297 (352)
T TIGR02658 233 IEAFT--EAEK--ADGWRPGGWQQVAYHR--ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--------- 297 (352)
T ss_pred eeecc--cccc--ccccCCCcceeEEEcC--CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------
Confidence 11100 0000 0001233334499999 6888888532 24799999999999887654
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCC-EEEEEE-cCCcEEEEeCCCCC
Q 001538 178 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTSTTA 233 (1057)
Q Consensus 178 ~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~-~latg~-~DG~I~lWd~~~~~ 233 (1057)
...+..++++ |||+ +|++.. .+|+|.+.|+.++.
T Consensus 298 ---------------------G~~~~~iavS-~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 298 ---------------------GHEIDSINVS-QDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ---------------------CCceeeEEEC-CCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 4578899999 9999 877666 68999999998763
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.15 E-value=7.9e-05 Score=80.01 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=75.9
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceee-----ee---ecCCCCCEEEEEEecCCCeEEEEecCccEEEEEec
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQG-----IE---VAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 516 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~-----i~---l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~ 516 (1057)
.++++-.+.-|+||+-|++...| +--..+.++ .+ +.+--.+|+.|.|+++|+++++-+. -+|+|||+.
T Consensus 226 cn~f~YSSSKGtIrLcDmR~~aL---Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 226 CNVFVYSSSKGTIRLCDMRQSAL---CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred ccEEEEecCCCcEEEeechhhhh---hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 45778888899999999986543 111111111 01 1122347899999999999987654 589999996
Q ss_pred CCCCccceeeeecCC-CceEEeccCCcceeeEEEeeCCCCe---EEEEEcCCCCEEEEEeCCceEEEEeCCCCe
Q 001538 517 GSLDAKNFLFVLETK-SEVHALPEGKISLCRAVFSLVNSPV---RALQFTSSGAKLAVGFECGRVAVLDMNLLS 586 (1057)
Q Consensus 517 ~~~~~~~~~~~~~~~-~~~~~i~~~~g~~~~~~~~~h~~~I---tsLa~S~~g~~lA~G~~dG~V~vwDi~~~~ 586 (1057)
.+.......++.+.- .++-.+ | .+..| .-++||.++.++.+|+-...++|+++..+.
T Consensus 302 me~~pv~t~~vh~~lr~kLc~l-----Y--------EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 302 MEAKPVETYPVHEYLRSKLCSL-----Y--------ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ccCCcceEEeehHhHHHHHHHH-----h--------hccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 554432221111100 000000 0 01111 346899999999999999999999975553
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.14 E-value=7.3e-06 Score=61.36 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=34.8
Q ss_pred eeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001538 545 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 581 (1057)
Q Consensus 545 ~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwD 581 (1057)
|...+.+|.++|++|+|+|++.+||+|+.||+|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4568889999999999999999999999999999998
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=0.00041 Score=78.86 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=75.4
Q ss_pred eeeeeecCCCCCEEEEEEecCCCeEEEEec---CccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCC
Q 001538 477 VQGIEVAGSRAPVSTLSFCFINSSLAVGNE---FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN 553 (1057)
Q Consensus 477 v~~i~l~~~~~~V~~v~fspd~~~Lavg~~---dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~ 553 (1057)
+..+++. ..|-+.+|-|.|..+++-+. ..+|.+|.+..+...-. ++.....
T Consensus 439 ve~velk---e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~-----------------------lVk~~dk 492 (698)
T KOG2314|consen 439 VEVVELK---ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS-----------------------LVKELDK 492 (698)
T ss_pred ceeeecc---hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh-----------------------hhhhhcc
Confidence 3334454 38899999999998776543 35788898875322111 1112234
Q ss_pred CCeEEEEEcCCCCEEEEE---eCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCC
Q 001538 554 SPVRALQFTSSGAKLAVG---FECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNP 630 (1057)
Q Consensus 554 ~~ItsLa~S~~g~~lA~G---~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1057)
...+.|.|||.|++++++ +..|.+.++|..-..+...... .| ..-+.+.|+ |
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~--eh-~~at~veWD----------------------P 547 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP--EH-FAATEVEWD----------------------P 547 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc--cc-cccccceEC----------------------C
Confidence 567889999999998886 5578899999864222211111 12 234567787 8
Q ss_pred CCcEEEEEecCCeE
Q 001538 631 AEEVIIVLFKDAKI 644 (1057)
Q Consensus 631 d~~~L~sgt~dg~i 644 (1057)
.|.|+++++.-+..
T Consensus 548 tGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 548 TGRYVVTSSSSWRH 561 (698)
T ss_pred CCCEEEEeeehhhh
Confidence 89999998876543
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.12 E-value=0.00014 Score=86.56 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=95.1
Q ss_pred eeEEEEEcCCcEEEEE-eCCCc--EEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEc-cCCcEEEEEEeCCCCcee
Q 001538 29 YKNLEFLQNQGFLISI-TNDNE--IQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 29 v~~L~F~~~~~~Lvs~-s~d~~--I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~-~~G~v~v~~~d~~~~~l~ 104 (1057)
....+|+||+.+|+.+ +.++. |.+||+.+++...........+..+|+|++++++... .+|...+|.+|.+.++..
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 4468999999877654 45554 8888998887543333344567789999999886654 467778998888766543
Q ss_pred ccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC-CC--EEEEEEccCCeEEEEecCCcccccCCccCCC
Q 001538 105 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 181 (1057)
Q Consensus 105 ~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~-dG--~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p 181 (1057)
. +... ........|+| +|+.|+.... ++ .|.++|+.+++.......
T Consensus 344 ~----Lt~~------------g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~------------- 392 (448)
T PRK04792 344 R----LTFE------------GEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQVLTST------------- 392 (448)
T ss_pred E----EecC------------CCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEEccCC-------------
Confidence 1 1110 01123458999 6777766544 44 456678887765432111
Q ss_pred CCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC-Cc--EEEEeCC
Q 001538 182 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GD--ILLWNTS 230 (1057)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D-G~--I~lWd~~ 230 (1057)
.......|+ |||++|+..+.+ |. |.+++..
T Consensus 393 ------------------~~d~~ps~s-pdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 393 ------------------RLDESPSVA-PNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred ------------------CCCCCceEC-CCCCEEEEEEecCCceEEEEEECC
Confidence 000123699 999987765543 43 6666763
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.11 E-value=4e-05 Score=82.35 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=116.0
Q ss_pred CCCcEEEEEeCCCcEEEEecCC-CceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCc
Q 001538 443 SVDRVYLAGYHDGSVRIWDATY-PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 521 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~-~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~ 521 (1057)
+...-+++.+.|.+||+|--.. ++.-+ .+.. ..+.+++++++.++.+.|.+|-.+|+|.-|.+...-..
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wp------sI~~----~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk 103 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWP------SIYH----YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK 103 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCc------hhhh----hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence 3344588999999999995332 21100 1100 12347888899999999999988888887765432111
Q ss_pred cc--------eee-------------eec----------------------------------------CCCceEEec-c
Q 001538 522 KN--------FLF-------------VLE----------------------------------------TKSEVHALP-E 539 (1057)
Q Consensus 522 ~~--------~~~-------------~~~----------------------------------------~~~~~~~i~-~ 539 (1057)
.. ..+ ++. ..+.+..+. .
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~ 183 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLE 183 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEe
Confidence 00 000 000 001111111 1
Q ss_pred CCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeE-EEEeecCCCCCCCeEEEEEeeccCcccccCC
Q 001538 540 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV-LFFTDDISGSSSPIISMTWTEFKNTHSLAKN 618 (1057)
Q Consensus 540 ~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~-l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~ 618 (1057)
.++.+++..+.+|.++|++++|.+..+.|.+|+.|-.|.+||+-..+- .+.. .+|...|..+++.
T Consensus 184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el---~gh~~kV~~l~~~----------- 249 (404)
T KOG1409|consen 184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL---QGHNDKVQALSYA----------- 249 (404)
T ss_pred ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee---ccchhhhhhhhhh-----------
Confidence 345567778889999999999999999999999999999999965432 2332 3588888888876
Q ss_pred CCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 619 PNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 619 ~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
.--..|++++.||-|.+||...
T Consensus 250 -----------~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 250 -----------QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred -----------hhheeeeeccCCCeEEEEeccc
Confidence 3356799999999999999654
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=1.3e-05 Score=89.78 Aligned_cols=185 Identities=11% Similarity=0.121 Sum_probs=119.8
Q ss_pred CCCCCCCCCCccccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecC
Q 001538 428 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 507 (1057)
Q Consensus 428 l~Gg~~~~~~~~~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~d 507 (1057)
.+|+....+.+. .-...+-+++++.|.+|++|.+.... ....+..-+.....|..+|..+.|-.+-+++++ .|
T Consensus 731 f~GH~~~iRai~-AidNENSFiSASkDKTVKLWSik~Eg----D~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 731 FTGHQEKIRAIA-AIDNENSFISASKDKTVKLWSIKPEG----DEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred ccCcHHHhHHHH-hcccccceeeccCCceEEEEEecccc----CccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 356666555442 23456678999999999999986432 112223334444578889999999999887765 58
Q ss_pred ccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeE
Q 001538 508 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV 587 (1057)
Q Consensus 508 G~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~ 587 (1057)
|-+++||.-....... +.+ ..-.+..+.|.||-.-..--.+|.++...+|+++|.+....
T Consensus 804 ~giHlWDPFigr~Laq----------~~d----------apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQ----------MED----------APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW 863 (1034)
T ss_pred CcceeecccccchhHh----------hhc----------CcccCCCceeEecccCcchheeeeccchhhheeeecccccc
Confidence 8999998532211100 000 00011223344443222222345558889999999998766
Q ss_pred EEEeec--CCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecCccccC
Q 001538 588 LFFTDD--ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLK 663 (1057)
Q Consensus 588 l~~~~~--~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~i~p~ 663 (1057)
...... .++...-+.+++.. +.|++|+++-..|+|.+.|..+|.+|++ ++|.
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa----------------------~~GN~lAa~LSnGci~~LDaR~G~vINs--wrpm 917 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVA----------------------DKGNKLAAALSNGCIAILDARNGKVINS--WRPM 917 (1034)
T ss_pred eeeEEeccCCCCchheeEEEec----------------------cCcchhhHHhcCCcEEEEecCCCceecc--CCcc
Confidence 555443 24455567777776 7799999999999999999999999986 5664
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.00017 Score=85.58 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=96.5
Q ss_pred CeeEEEEEcCCcEEE-EEeCCC--cEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEc-cCCcEEEEEEeCCCCce
Q 001538 28 PYKNLEFLQNQGFLI-SITNDN--EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 28 ~v~~L~F~~~~~~Lv-s~s~d~--~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~-~~G~v~v~~~d~~~~~l 103 (1057)
.+...+|+||+.+|+ +.+.++ .|.+||+.++....-.......+...|+|++++++..+ .+|...|+.++...++.
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 345689999998877 444444 68888999887643223344566788999999876554 56677888888766554
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC-C--EEEEEEccCCeEEEEecCCcccccCCccCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSEAQIIFVGGGKDLQLKDGVVDS 180 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d-G--~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (1057)
.. +... ........|+| +|+.|+....+ + .|.+||+.+++.......
T Consensus 324 ~~----lt~~------------~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~------------ 373 (430)
T PRK00178 324 ER----VTFV------------GNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT------------ 373 (430)
T ss_pred EE----eecC------------CCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccCC------------
Confidence 31 1100 01123467999 67777766543 3 578899988865432111
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC-C--cEEEEeCC
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-G--DILLWNTS 230 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D-G--~I~lWd~~ 230 (1057)
.......|+ |||++|+....+ | .|.++++.
T Consensus 374 -------------------~~~~~p~~s-pdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 374 -------------------SLDESPSVA-PNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred -------------------CCCCCceEC-CCCCEEEEEEecCCceEEEEEECC
Confidence 001134799 999988776544 3 35666664
No 273
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.05 E-value=0.00065 Score=80.23 Aligned_cols=183 Identities=12% Similarity=0.102 Sum_probs=103.9
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcE--EE-EEeCC--CcEEEEECCCCceeeeecCCCCEEEEEEecCCcE
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGF--LI-SITND--NEIQVWSLESRSLACCLKWESNITAFSVISGSHF 81 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~--Lv-s~s~d--~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~ 81 (1057)
.+|.+...++...........++..=+|+||+.. ++ ....+ ..|.+.++.+++.......++.....+++|++++
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 4677776555433222223445666789999864 22 33333 3677888988775444445666677899999998
Q ss_pred EEEEcc-CCc--EEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE-CCCEEEEEE-
Q 001538 82 MYIGDE-NGL--MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWD- 156 (1057)
Q Consensus 82 l~vG~~-~G~--v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~-~dG~I~lWd- 156 (1057)
|+.... +|+ +.+..++...+... .+.++.. ..........|+| +|++|+... .+|...||.
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g-~~~~lt~-----------~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIG-KPRRLLN-----------EAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCC-cceEeec-----------CCCCCcCCeEECC--CCCEEEEEECCCCCceEEEE
Confidence 876543 443 33433443321100 0111110 0112345679999 788777766 456555554
Q ss_pred -ccC-CeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC---CcEEEEeCCC
Q 001538 157 -VSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTST 231 (1057)
Q Consensus 157 -l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D---G~I~lWd~~~ 231 (1057)
+.. +.....+.. ....+....|+ |||++|+....+ ..|.+||+.+
T Consensus 311 ~~~~~g~~~~~lt~-----------------------------~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 311 QIDPEGQSPRLLTK-----------------------------KYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred ECcccccceEEecc-----------------------------CCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCC
Confidence 431 221221111 02345678899 999998876543 3689999977
Q ss_pred CC
Q 001538 232 TA 233 (1057)
Q Consensus 232 ~~ 233 (1057)
+.
T Consensus 361 g~ 362 (428)
T PRK01029 361 GR 362 (428)
T ss_pred CC
Confidence 63
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.03 E-value=2.6e-05 Score=85.62 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=91.2
Q ss_pred eeEEEEEcCCcEEEEEe---CCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceec
Q 001538 29 YKNLEFLQNQGFLISIT---NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 105 (1057)
Q Consensus 29 v~~L~F~~~~~~Lvs~s---~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~ 105 (1057)
-..+.|..+....+.+. ....+.+|+..+++..-.+.+.+-++.++++|+..++++++.|+.|+|-.|+.
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa------- 182 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA------- 182 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-------
Confidence 34455555444444333 34567788877777766667778899999999999999999999888888754
Q ss_pred cCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecC
Q 001538 106 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 168 (1057)
Q Consensus 106 ~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~ 168 (1057)
++.|.. +..+|..-|..|+..+. ..|++++.|+++++||+.+|+.++++..
T Consensus 183 -~f~Ies--------fclGH~eFVS~isl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 183 -TFVIES--------FCLGHKEFVSTISLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred -ccchhh--------hccccHhheeeeeeccC---ceeeecCCCCcEEEEecccCCcccccch
Confidence 355543 33456677999999983 3589999999999999999999877765
No 275
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=98.01 E-value=8.8e-06 Score=73.52 Aligned_cols=49 Identities=35% Similarity=0.483 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhhchhhHHHHHHHHHHHhh
Q 001538 1002 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1050 (1057)
Q Consensus 1002 ~~~~~~~~~~~~l~e~~~kl~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 1050 (1057)
+.-..+..+-+++.||||||+.|++||++|+.+|+.|.+-|++|-++|.
T Consensus 14 ~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 14 EVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999999999999999999999998873
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.97 E-value=0.0005 Score=76.67 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=100.7
Q ss_pred EEEcCCCCCeeEEEEEcCCcEEEEEeCCC-cEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeC
Q 001538 20 LLISPSQLPYKNLEFLQNQGFLISITNDN-EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 98 (1057)
Q Consensus 20 ~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~-~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~ 98 (1057)
.++.++...|+..++.-+..-++.+..|| .+.|+|.++++.-.....-+.|.++.++++|++++++-..+ .+|.+|.
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~--el~vidi 430 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF--ELWVIDI 430 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce--EEEEEEe
Confidence 34566677799999987776788888887 89999999988655455558999999999999999998888 8899988
Q ss_pred CCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC----EEEEEEccCCeEEEEec
Q 001538 99 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA----LVILWDVSEAQIIFVGG 167 (1057)
Q Consensus 99 ~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG----~I~lWdl~~~~~~~~~~ 167 (1057)
++++.. .|. ++.-+-|+.+.||| ++..++-++-+| .|+|||+..+++.....
T Consensus 431 dngnv~----~id-----------kS~~~lItdf~~~~--nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 431 DNGNVR----LID-----------KSEYGLITDFDWHP--NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred cCCCee----Eec-----------ccccceeEEEEEcC--CceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 887654 122 12234599999999 688888776665 78999999998876543
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.96 E-value=1.5e-05 Score=100.54 Aligned_cols=170 Identities=11% Similarity=0.163 Sum_probs=120.5
Q ss_pred ccccCCcEEEE--cCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC-CCEEEEEEecC
Q 001538 2 CLCRDGRIKVI--GGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISG 78 (1057)
Q Consensus 2 vgt~dG~I~v~--g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~ 78 (1057)
.|+.||.|++| |..+.-+.+.....+.|+.++|.-+|+-...++.||.+-+|... .++..+.+-+ ...+.|.|..
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~- 2302 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG- 2302 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-
Confidence 57899999996 55544455555555889999999999888889999999999986 5555555533 3445555554
Q ss_pred CcEEEEE---ccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEE
Q 001538 79 SHFMYIG---DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 155 (1057)
Q Consensus 79 ~~~l~vG---~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lW 155 (1057)
..++.. .+++++.+|+--... +... .+..|.+.++++++-|+ -..+++|+.+|.|+||
T Consensus 2303 -s~~~tag~s~d~~n~~lwDtl~~~-----~~s~-----------v~~~H~~gaT~l~~~P~--~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2303 -SLLATAGRSSDNRNVCLWDTLLPP-----MNSL-----------VHTCHDGGATVLAYAPK--HQLLISGGRKGEVCLF 2363 (2439)
T ss_pred -hhhhccccCCCCCcccchhcccCc-----ccce-----------eeeecCCCceEEEEcCc--ceEEEecCCcCcEEEe
Confidence 223322 246776676522110 0111 22457888999999995 5578889999999999
Q ss_pred EccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 156 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
|++..++++++.. |+ ...++++|+..|.|+||++...
T Consensus 2364 D~rqrql~h~~~~--------------------------------------~~--~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA--------------------------------------LD--TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ehHHHHHHHHhhh--------------------------------------hh--hhheeeccCcccceEEEEcccc
Confidence 9998888766542 23 3467999999999999999765
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.004 Score=73.21 Aligned_cols=154 Identities=8% Similarity=0.018 Sum_probs=101.0
Q ss_pred CeeEEEEEcCCcE-EEEEeCC---CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEE-EccCCcEEEEEEeCCCCc
Q 001538 28 PYKNLEFLQNQGF-LISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI-GDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 28 ~v~~L~F~~~~~~-Lvs~s~d---~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~v-G~~~G~v~v~~~d~~~~~ 102 (1057)
+...-+|+|++.. ++-.+.+ ..|.++|+.+++...-...++...+..++|++++++. ...+|+-.||.+|.+.+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 7788999999975 4433433 5699999998876444456677778889999987765 444666688888876665
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC-C--EEEEEEccCCeEEEEecCCcccccCCccC
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSEAQIIFVGGGKDLQLKDGVVD 179 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d-G--~I~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (1057)
+. ++... ........|+| +|++|+..+.. | .|.++|+.+++..+....
T Consensus 269 ~~----~LT~~------------~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----------- 319 (419)
T PRK04043 269 LT----QITNY------------PGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----------- 319 (419)
T ss_pred EE----EcccC------------CCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-----------
Confidence 44 11110 01123347999 68877777643 3 677888887776443211
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC---------CcEEEEeCCCC
Q 001538 180 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---------GDILLWNTSTT 232 (1057)
Q Consensus 180 ~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D---------G~I~lWd~~~~ 232 (1057)
+ .. ...|+ |||+.|+-.+.. ..|.+.|+.++
T Consensus 320 -------g-----------~~---~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 320 -------G-----------KN---NSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred -------C-----------Cc---CceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 0 11 13799 999988776654 25677777665
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.91 E-value=0.004 Score=70.58 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=75.9
Q ss_pred CCCEEEEEEecCCCeEEEEe--cCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcC
Q 001538 486 RAPVSTLSFCFINSSLAVGN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS 563 (1057)
Q Consensus 486 ~~~V~~v~fspd~~~Lavg~--~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~ 563 (1057)
..+|...+|.|.+..+++.+ ..-.+.+|+++.+ .++....++=+.+-|||
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------------------------l~~~~Pe~~rNT~~fsp 325 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------------------------LRFYFPEQKRNTIFFSP 325 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc----------------------------eEEecCCcccccccccC
Confidence 45999999999999887654 6678888888665 13445566667889999
Q ss_pred CCCEEEEEe---CCceEEEEeCCCCeEEE-EeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEe
Q 001538 564 SGAKLAVGF---ECGRVAVLDMNLLSVLF-FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 639 (1057)
Q Consensus 564 ~g~~lA~G~---~dG~V~vwDi~~~~~l~-~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt 639 (1057)
.++++.+++ ..|.+-+||..+....- .+.. ..-.-+.|+ ||++.+.+.+
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-----~n~s~~~ws----------------------pd~qF~~~~~ 378 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-----LNTSYCDWS----------------------PDGQFYDTDT 378 (561)
T ss_pred cccEEEEecCCccccceEEeccCCceEEEEEeec-----CCceEeecc----------------------CCceEEEecC
Confidence 999988754 45789999997765443 3322 122334465 6777666553
Q ss_pred ------cCCeEEEEeCC
Q 001538 640 ------KDAKISIVGGS 650 (1057)
Q Consensus 640 ------~dg~i~v~d~~ 650 (1057)
.|..|.+||..
T Consensus 379 ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 379 TSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CCcccccCcceEEEEec
Confidence 46778888754
No 280
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=1.1e-05 Score=73.61 Aligned_cols=51 Identities=29% Similarity=0.644 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhhchhhHHHHHHHHHHHhhcccccc
Q 001538 1002 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1056 (1057)
Q Consensus 1002 ~~~~~~~~~~~~l~e~~~kl~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~~~ 1056 (1057)
++-..+..+=+|..||||||..|++||+.|+++|..|-.-|..|.+| .||+
T Consensus 40 eVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk----~wWk 90 (116)
T KOG0860|consen 40 EVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRK----MWWK 90 (116)
T ss_pred HHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 45688899999999999999999999999999999999999988877 5886
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.90 E-value=0.0042 Score=81.08 Aligned_cols=213 Identities=14% Similarity=0.116 Sum_probs=118.7
Q ss_pred ccCCcEEEEcCCCeEEEEEcCCC--------------CCeeEEEEEcCCcEEEEEeC-CCcEEEEECCCCceeeeecC--
Q 001538 4 CRDGRIKVIGGDGIEGLLISPSQ--------------LPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKW-- 66 (1057)
Q Consensus 4 t~dG~I~v~g~~~~e~~~~~~~~--------------~~v~~L~F~~~~~~Lvs~s~-d~~I~VWdl~s~~~l~tl~~-- 66 (1057)
+.+++|++|..++.........+ ..-..|+|.++++.|+.++. .+.|+++|+.++.+. ++..
T Consensus 587 s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G 665 (1057)
T PLN02919 587 SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNG 665 (1057)
T ss_pred CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccC
Confidence 46788888877654333222111 01357889988877766665 467999999887642 2210
Q ss_pred ------C----------CCEEEEEEecCCcEEEEEcc-CCcEEEEEEeCCCCceeccCcccchhhhhhhcCCC--CCCCC
Q 001538 67 ------E----------SNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP--LLSHQ 127 (1057)
Q Consensus 67 ------~----------~~Ita~~~sp~~~~l~vG~~-~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~--~~~~~ 127 (1057)
. ..-+.++++|+...+|+.+. ++ +||.+|...+... .|.-..... ...+.. .....
T Consensus 666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~--~I~v~d~~~g~v~--~~~G~G~~~-~~~g~~~~~~~~~ 740 (1057)
T PLN02919 666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH--QIWEYNISDGVTR--VFSGDGYER-NLNGSSGTSTSFA 740 (1057)
T ss_pred cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC--eEEEEECCCCeEE--EEecCCccc-cCCCCcccccccc
Confidence 0 12357899997667766654 45 6777777655432 111000000 000000 11123
Q ss_pred CeEEEEeCcCCCCCeEEEE-ECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEE
Q 001538 128 PVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 206 (1057)
Q Consensus 128 ~V~sI~~sP~d~g~~lli~-~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ 206 (1057)
...+|+++| +|++|.++ +.++.|++||+.++......++...... ....-|..+..... ..-.....++
T Consensus 741 ~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~-------~l~~fG~~dG~g~~-~~l~~P~Gva 810 (1057)
T PLN02919 741 QPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD-------NLFKFGDHDGVGSE-VLLQHPLGVL 810 (1057)
T ss_pred CccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc-------ccccccCCCCchhh-hhccCCceee
Confidence 467899999 57656555 4568999999998765433222000000 00000000000000 0112335889
Q ss_pred EecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 207 WASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 207 ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
|. ++|..+++-+.++.|++||..++.
T Consensus 811 vd-~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 811 CA-KDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred Ee-CCCcEEEEECCCCEEEEEECCCCe
Confidence 99 999988999999999999997763
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00046 Score=73.03 Aligned_cols=161 Identities=10% Similarity=0.093 Sum_probs=108.3
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceee
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 526 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~ 526 (1057)
.++-++.+|.|.++.....+ -...+++ +....+.- .-.-++.|++.+..++++..+|.+.+-+......
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~--ss~~L~~-ls~~ki~~--~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------ 155 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDE--SSVHLRG-LSSKKISV--VEALSLDISTSGTKIFVSDSRGSISGVYETEMVL------ 155 (339)
T ss_pred eeeeccccceEEEEeeccce--eeeeecc-cchhhhhh--eeeeEEEeeccCceEEEEcCCCcEEEEecceeee------
Confidence 46677888999888654332 1111221 00001110 0234688999999999999999998544322111
Q ss_pred eecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC-CCEEEEEeCCceEEEEeCCCC-eEEEEeecCCCCCCCeEEE
Q 001538 527 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLL-SVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 527 ~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~-g~~lA~G~~dG~V~vwDi~~~-~~l~~~~~~~g~~~~V~sl 604 (1057)
+-...++.|.-+++..+|+.. -..+-+|++||.+.-||++-+ +.+++- ..-|...|.|+
T Consensus 156 -----------------e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n--~kvH~~GV~SI 216 (339)
T KOG0280|consen 156 -----------------EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN--SKVHTSGVVSI 216 (339)
T ss_pred -----------------eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec--ceeeecceEEE
Confidence 001256679999999999864 458999999999999999944 445441 12388999998
Q ss_pred EEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC-CcceeecC
Q 001538 605 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS-SENMISSS 658 (1057)
Q Consensus 605 ~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~-tg~~i~~~ 658 (1057)
.-+ .|...++++|+-|-.|++||.. -|+.|...
T Consensus 217 ~ss---------------------~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 217 YSS---------------------PPKPTYIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred ecC---------------------CCCCceEEEeccccceeeeehhcccCccccC
Confidence 765 2567899999999999999987 46666544
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.86 E-value=0.0013 Score=85.56 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=107.3
Q ss_pred eEEEEEcCCcE-EEEEeCCCcEEEEECCCCceeeeec------CC---------CCEEEEEEecCCcEEEEEccC-CcEE
Q 001538 30 KNLEFLQNQGF-LISITNDNEIQVWSLESRSLACCLK------WE---------SNITAFSVISGSHFMYIGDEN-GLMS 92 (1057)
Q Consensus 30 ~~L~F~~~~~~-Lvs~s~d~~I~VWdl~s~~~l~tl~------~~---------~~Ita~~~sp~~~~l~vG~~~-G~v~ 92 (1057)
..|+|.++++. +++.+.++.|.+||..++....-.. .. ...+.++++|++++||+.+.. + +
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~--~ 763 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS--S 763 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC--e
Confidence 47899995444 4555677999999998876532110 00 134568999999988877654 6 4
Q ss_pred EEEEeCCCCcee--ccCcc-cc-hh-hhhhhcCC-CCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEe
Q 001538 93 VIKYDADEGKLF--QLPYN-IS-AD-ALSEKAGF-PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 166 (1057)
Q Consensus 93 v~~~d~~~~~l~--~~~~~-i~-~~-~~~~~~g~-~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~ 166 (1057)
|+.+|.+.+... ..... .+ +. .....-|. .........+|++.| +|+.+++-+.++.|++||..++.+....
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~--dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK--DGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC--CCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 555555433211 00000 00 00 00000000 001122346889998 6876666677899999999988876554
Q ss_pred cCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 167 GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
+... +....|. .....-.....++++ ++|+.+++-..++.|++||+.++.
T Consensus 842 G~G~-----------~G~~dG~-----~~~a~l~~P~GIavd-~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 842 GTGK-----------AGFKDGK-----ALKAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred ccCC-----------cCCCCCc-----ccccccCCceEEEEe-CCCCEEEEECCCCEEEEEECCCCc
Confidence 3200 0000000 001113456789999 999988888899999999998763
No 284
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.86 E-value=0.0011 Score=77.13 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=91.5
Q ss_pred EEEEcC--CCeEEEEEcCCCCCeeEEEEEcCCcE-EEEE----eCCCcEE----EEECCCCce----eeeecCCCCEEEE
Q 001538 9 IKVIGG--DGIEGLLISPSQLPYKNLEFLQNQGF-LISI----TNDNEIQ----VWSLESRSL----ACCLKWESNITAF 73 (1057)
Q Consensus 9 I~v~g~--~~~e~~~~~~~~~~v~~L~F~~~~~~-Lvs~----s~d~~I~----VWdl~s~~~----l~tl~~~~~Ita~ 73 (1057)
+++|+- .+.|++...-....-.++.|+..+.+ +.++ +.+|.+. +|++...++ +.++..+..|+|+
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c 265 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence 455542 35666654443333468888876554 4443 3455443 566655543 4555678899999
Q ss_pred EEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEE
Q 001538 74 SVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 153 (1057)
Q Consensus 74 ~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~ 153 (1057)
+.+|+.+++++|++||.|.+| |..++ ++. + +. ..-.++.++||| +|..++++++.|.+.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLy--D~~~~-~t~--~-~k-------------a~~~P~~iaWHp--~gai~~V~s~qGelQ 324 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILY--DTTRG-VTL--L-AK-------------AEFIPTLIAWHP--DGAIFVVGSEQGELQ 324 (545)
T ss_pred ecCcccceEEEEecCCeEEEE--EcCCC-eee--e-ee-------------ecccceEEEEcC--CCcEEEEEcCCceEE
Confidence 999999999999999966555 44332 220 0 00 112478999999 688899999999999
Q ss_pred EEEccCCeEEEEec
Q 001538 154 LWDVSEAQIIFVGG 167 (1057)
Q Consensus 154 lWdl~~~~~~~~~~ 167 (1057)
+||+.-+.+....-
T Consensus 325 ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 325 CFDMALSPIKMQLL 338 (545)
T ss_pred EEEeecCccceeec
Confidence 99998776654443
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.83 E-value=0.025 Score=64.36 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=66.3
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEec---CccEEEEEecCCCCccc
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE---FGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~---dG~V~l~~~~~~~~~~~ 523 (1057)
.+|+|..+-++-++|+.... .+.+. ..+=+.+.|+|.++++++++- .|.+.+|+....
T Consensus 290 ~vi~g~~pa~~s~~~lr~Nl---~~~~P-----------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r----- 350 (561)
T COG5354 290 AVISGYMPASVSVFDLRGNL---RFYFP-----------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR----- 350 (561)
T ss_pred eEEecccccceeecccccce---EEecC-----------CcccccccccCcccEEEEecCCccccceEEeccCCc-----
Confidence 57788899999999987652 12221 123456789999999888654 478888875332
Q ss_pred eeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEe------CCceEEEEeCCCCeE
Q 001538 524 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF------ECGRVAVLDMNLLSV 587 (1057)
Q Consensus 524 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~------~dG~V~vwDi~~~~~ 587 (1057)
|.+...+.+.+ .+-..|||||+++-+.+ .|..++|||+.+..+
T Consensus 351 -------------------f~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 351 -------------------FKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred -------------------eEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 22222333322 33446999999987764 356799999976544
No 286
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.80 E-value=0.0013 Score=76.47 Aligned_cols=108 Identities=17% Similarity=0.365 Sum_probs=72.6
Q ss_pred CCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEE
Q 001538 126 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 205 (1057)
Q Consensus 126 ~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl 205 (1057)
.+.|.+.+++| +.++|++|+.||.|++||...+-.... .. .-..+.+
T Consensus 259 ~s~v~~ca~sp--~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka------------------------------~~~P~~i 305 (545)
T PF11768_consen 259 PSQVICCARSP--SEDKLVLGCEDGSIILYDTTRGVTLLA-KA------------------------------EFIPTLI 305 (545)
T ss_pred CCcceEEecCc--ccceEEEEecCCeEEEEEcCCCeeeee-ee------------------------------cccceEE
Confidence 56899999999 456799999999999999977643322 11 2235789
Q ss_pred EEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccc-cCCccEEEEEeec
Q 001538 206 CWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSA-ERRLPVIVLHWST 267 (1057)
Q Consensus 206 ~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~-~~~~pI~~l~w~~ 267 (1057)
+|| |+|..|++|+.-|.|.+||+.-.............|-..++++.- ........+.|..
T Consensus 306 aWH-p~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~ 367 (545)
T PF11768_consen 306 AWH-PDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAP 367 (545)
T ss_pred EEc-CCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEecc
Confidence 999 999999999999999999997653222211111222223333321 1233456778874
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.79 E-value=0.0095 Score=63.58 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=33.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEE
Q 001538 552 VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFF 590 (1057)
Q Consensus 552 h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~ 590 (1057)
....|-.|..||||++||+-..+|.|.||++-..++...
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 356788999999999999999999999999976665543
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=7.5e-05 Score=80.24 Aligned_cols=130 Identities=17% Similarity=0.105 Sum_probs=96.6
Q ss_pred CCEEEEEEecCCCeEEEEecCccEEEEEecCC-CCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcC-C
Q 001538 487 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGS-LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-S 564 (1057)
Q Consensus 487 ~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~-~ 564 (1057)
..|.++.|...+..+..|..+|.|..+|++.. +.. |.. +..--|.+.||||..-. +
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~--------------------~~~--a~rlyh~Ssvtslq~Lq~s 310 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN--------------------GWC--AQRLYHDSSVTSLQILQFS 310 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC--------------------Ccc--eEEEEcCcchhhhhhhccc
Confidence 47888999998899999999999999999754 111 111 12224899999999887 8
Q ss_pred CCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeE
Q 001538 565 GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKI 644 (1057)
Q Consensus 565 g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i 644 (1057)
+++|.+.+.+|.|++||++--++-......+||...-+-+-+. .. +....+++++.|.-.
T Consensus 311 ~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~---v~-----------------~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 311 QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH---VK-----------------EEEGSIFSVGDDCYT 370 (425)
T ss_pred cceEeeccCcCceeEeeehhhhcccceeeeecccccccccccc---cc-----------------cccceEEEccCeeEE
Confidence 8999999999999999998666522223334565433333333 21 456678889999999
Q ss_pred EEEeCCCcceeecC
Q 001538 645 SIVGGSSENMISSS 658 (1057)
Q Consensus 645 ~v~d~~tg~~i~~~ 658 (1057)
+||.+.+|.++++.
T Consensus 371 RiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTI 384 (425)
T ss_pred EEEecccCceeecc
Confidence 99999999999876
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.71 E-value=0.0004 Score=81.07 Aligned_cols=125 Identities=19% Similarity=0.374 Sum_probs=75.8
Q ss_pred eecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCe
Q 001538 63 CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 142 (1057)
Q Consensus 63 tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~ 142 (1057)
++...+.+.++++.|.++-+++++..| +.+..+|. ||+-+. ++.. ..+-.|..++|+|...-.+
T Consensus 20 sl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~--------p~~ppr-~l~h------~tpw~vad~qws~h~a~~~ 83 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDD--------PFTPPR-WLHH------ITPWQVADVQWSPHPAKPY 83 (1081)
T ss_pred EEEecCcccceeeccccchhhhhhhcC-eEEEeccC--------CCCCce-eeec------cCcchhcceecccCCCCce
Confidence 344567788999999999999999998 24444432 222110 0000 0122466666665322222
Q ss_pred EEEEECCCEEEEEEccCC---eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001538 143 VLIAYENALVILWDVSEA---QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 219 (1057)
Q Consensus 143 lli~~~dG~I~lWdl~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~ 219 (1057)
-++...+..-.+|++... .+...+-+ +...|+.+.|++..-..+++.+
T Consensus 84 wiVsts~qkaiiwnlA~ss~~aIef~lhg-----------------------------hsraitd~n~~~q~pdVlatcs 134 (1081)
T KOG0309|consen 84 WIVSTSNQKAIIWNLAKSSSNAIEFVLHG-----------------------------HSRAITDINFNPQHPDVLATCS 134 (1081)
T ss_pred eEEecCcchhhhhhhhcCCccceEEEEec-----------------------------CccceeccccCCCCCcceeecc
Confidence 333333333339998532 23333222 2788999999944557899999
Q ss_pred cCCcEEEEeCCCC
Q 001538 220 IDGDILLWNTSTT 232 (1057)
Q Consensus 220 ~DG~I~lWd~~~~ 232 (1057)
.|-.+..||+.+.
T Consensus 135 vdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 135 VDTYVHAWDMRSP 147 (1081)
T ss_pred ccccceeeeccCC
Confidence 9999999999775
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.71 E-value=0.00011 Score=54.97 Aligned_cols=29 Identities=34% Similarity=0.851 Sum_probs=28.2
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEe
Q 001538 199 EKEISALCWASSSGSILAVGYIDGDILLWN 228 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~DG~I~lWd 228 (1057)
...|.+++|+ |++.+|++|+.||+|++||
T Consensus 11 ~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWS-PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence 7899999999 9999999999999999997
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.68 E-value=0.065 Score=62.77 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=78.9
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceee
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 526 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~ 526 (1057)
.+..++.+|.+.-.|+.+++. +...+ +. ....+ ..++..|.+++.+|.|..++..+....
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~--~W~~~-------~~----~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~----- 317 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQI--VWKRE-------YG----SVNDF--AVDGGRIYLVDQNDRVYALDTRGGVEL----- 317 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCE--EEeec-------CC----CccCc--EEECCEEEEEcCCCeEEEEECCCCcEE-----
Confidence 344456789999999988862 22211 11 11111 234566777888888888887543221
Q ss_pred eecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEE-EE
Q 001538 527 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIIS-MT 605 (1057)
Q Consensus 527 ~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~s-l~ 605 (1057)
+... .+ ......+..+ .+.+|.+++.+|.|.++|..++++++.... ....+.+ -.
T Consensus 318 ----------W~~~-------~~--~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~---~~~~~~s~P~ 373 (394)
T PRK11138 318 ----------WSQS-------DL--LHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV---DSSGFLSEPV 373 (394)
T ss_pred ----------Eccc-------cc--CCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc---CCCcceeCCE
Confidence 0000 00 0011122222 144788999999999999999999988765 1222211 11
Q ss_pred EeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 606 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 606 f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
+ .+..|++++.||.|..++.
T Consensus 374 ~------------------------~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 374 V------------------------ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred E------------------------ECCEEEEEeCCceEEEEeC
Confidence 1 1456899999999988754
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.66 E-value=7.9e-05 Score=78.76 Aligned_cols=202 Identities=14% Similarity=0.203 Sum_probs=118.0
Q ss_pred CccccC--CcEEEEcCCCeE---EE----EEcCC-----------CCCeeEEEEEcCCc--EEEEEeCCCcEEEEECCCC
Q 001538 1 MCLCRD--GRIKVIGGDGIE---GL----LISPS-----------QLPYKNLEFLQNQG--FLISITNDNEIQVWSLESR 58 (1057)
Q Consensus 1 ~vgt~d--G~I~v~g~~~~e---~~----~~~~~-----------~~~v~~L~F~~~~~--~Lvs~s~d~~I~VWdl~s~ 58 (1057)
++||.| |||.+|++.... .. |++.. ...|..+++..+++ .++..+.|.+|++|.++.+
T Consensus 40 YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 40 YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecc
Confidence 478888 999999976432 21 11111 12367777776654 2444568999999999876
Q ss_pred cee-------------------eeec-------------------------CCCCEEEEEEecCCcEEEEEccCCcEEEE
Q 001538 59 SLA-------------------CCLK-------------------------WESNITAFSVISGSHFMYIGDENGLMSVI 94 (1057)
Q Consensus 59 ~~l-------------------~tl~-------------------------~~~~Ita~~~sp~~~~l~vG~~~G~v~v~ 94 (1057)
.+. .+.+ ++-.|.++++..+...+++ ..+=.|.+|
T Consensus 120 nlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lS-aDdLrINLW 198 (460)
T COG5170 120 NLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLS-ADDLRINLW 198 (460)
T ss_pred cchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeee-ccceeeeec
Confidence 320 0100 1123455666666665554 455668889
Q ss_pred EEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEE----EEecCCc
Q 001538 95 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII----FVGGGKD 170 (1057)
Q Consensus 95 ~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~----~~~~~~~ 170 (1057)
+++.-++.+.. --|......+. ..-|++-.|||. ..+++.-.+..|.|+|-|++...+- ..|.-
T Consensus 199 nl~i~D~sFnI--VDiKP~nmeeL-------teVItSaeFhp~-~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-- 266 (460)
T COG5170 199 NLEIIDGSFNI--VDIKPHNMEEL-------TEVITSAEFHPE-MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-- 266 (460)
T ss_pred cccccCCceEE--EeccCccHHHH-------HHHHhhcccCHh-HcceEEEecCCCcEEehhhhhhhhccCchhhhhh--
Confidence 88876654431 01111000000 224788899997 4556777788899999999855331 11111
Q ss_pred ccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 171 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
. ..+-+ .+.-+.-...|..+.|+ ++|++|++-. =.++++||++-.
T Consensus 267 ---~---------~D~v~---~~ff~eivsSISD~kFs-~ngryIlsRd-yltvkiwDvnm~ 311 (460)
T COG5170 267 ---T---------IDGVD---VDFFEEIVSSISDFKFS-DNGRYILSRD-YLTVKIWDVNMA 311 (460)
T ss_pred ---c---------cCccc---chhHHHHhhhhcceEEc-CCCcEEEEec-cceEEEEecccc
Confidence 0 00000 00011125678889999 9999988764 369999999764
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.65 E-value=0.0016 Score=68.07 Aligned_cols=153 Identities=9% Similarity=0.051 Sum_probs=104.9
Q ss_pred EEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeee
Q 001538 448 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFV 527 (1057)
Q Consensus 448 liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~ 527 (1057)
+.-++.|.++++.+++.+........ .+..+.++++++|++++++.+....|.+|.+.........
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~-----------~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~--- 196 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHN-----------QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN--- 196 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeec-----------cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee---
Confidence 34457888999988876653211000 0124788999999999999999999999999876543211
Q ss_pred ecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEe--ecCCCCCCCeEEEE
Q 001538 528 LETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT--DDISGSSSPIISMT 605 (1057)
Q Consensus 528 ~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~--~~~~g~~~~V~sl~ 605 (1057)
+ ........=-+.+||.....+|+++.||++.|||++........ .....|.+.|..+.
T Consensus 197 ---------~----------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~ 257 (344)
T KOG4532|consen 197 ---------I----------YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCR 257 (344)
T ss_pred ---------e----------EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEE
Confidence 0 11112233356789998889999999999999999865443222 12334889999999
Q ss_pred EeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcc
Q 001538 606 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 653 (1057)
Q Consensus 606 f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~ 653 (1057)
|++. ++. .+|+-.-.=+.+.+.|..++.
T Consensus 258 Fsl~-------------------g~l-DLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 258 FSLY-------------------GLL-DLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred ecCC-------------------Ccc-eEEEEecCcceEEEEEcccCc
Confidence 9842 233 445555666889999988865
No 294
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0013 Score=75.21 Aligned_cols=129 Identities=17% Similarity=0.318 Sum_probs=92.0
Q ss_pred cEEEEECCCCceeeeecCCCCEEEEEEecCCcEE--EEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCC
Q 001538 49 EIQVWSLESRSLACCLKWESNITAFSVISGSHFM--YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 126 (1057)
Q Consensus 49 ~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l--~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~ 126 (1057)
++.+.++......-.+.-+++|.++.|+|++.-+ +-|..--.+.+++++ +.++ |.++ .
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr---~~~v---~df~--------------e 311 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR---GKPV---FDFP--------------E 311 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC---CCEe---EeCC--------------C
Confidence 6778887744555555567999999999999654 446666666666543 2233 3333 3
Q ss_pred CCeEEEEeCcCCCCCeEEEEE-CC--CEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeE
Q 001538 127 QPVVGVLPHPNSSGNRVLIAY-EN--ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 203 (1057)
Q Consensus 127 ~~V~sI~~sP~d~g~~lli~~-~d--G~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vt 203 (1057)
+|=.++-|+| .|+.|++++ .+ |.|-+||+.+.+.+..+.. ..-+
T Consensus 312 gpRN~~~fnp--~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-------------------------------~~tt 358 (566)
T KOG2315|consen 312 GPRNTAFFNP--HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-------------------------------ANTT 358 (566)
T ss_pred CCccceEECC--CCCEEEEeecCCCCCceEEEeccchhhcccccc-------------------------------CCce
Confidence 4567889999 688777654 33 8999999999888766553 2345
Q ss_pred EEEEecCCCCEEEEEE------cCCcEEEEeCCC
Q 001538 204 ALCWASSSGSILAVGY------IDGDILLWNTST 231 (1057)
Q Consensus 204 sl~ws~pdG~~latg~------~DG~I~lWd~~~ 231 (1057)
-..|+ |||.+|+|+. .|+.++||+...
T Consensus 359 ~~eW~-PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 359 VFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEEc-CCCcEEEEEeccccEEecCCeEEEEecC
Confidence 67799 9999999986 479999999854
No 295
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.05 Score=59.91 Aligned_cols=189 Identities=16% Similarity=0.206 Sum_probs=118.7
Q ss_pred CCcEEEEcCCCe--EEEE--EcC-CCCCeeEEEEEcCCcEEEEEeC-CCcEEEEECCC-Cceeee---ecCCC-------
Q 001538 6 DGRIKVIGGDGI--EGLL--ISP-SQLPYKNLEFLQNQGFLISITN-DNEIQVWSLES-RSLACC---LKWES------- 68 (1057)
Q Consensus 6 dG~I~v~g~~~~--e~~~--~~~-~~~~v~~L~F~~~~~~Lvs~s~-d~~I~VWdl~s-~~~l~t---l~~~~------- 68 (1057)
.|.|..|.-+.. +..+ ..+ ...+-.++++.+++++|++++. .|.|.|+-+.. |.+... +.+.+
T Consensus 63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ 142 (346)
T COG2706 63 EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ 142 (346)
T ss_pred cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence 577777654431 2222 111 1334489999999999999884 58999999965 555333 22222
Q ss_pred ---CEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEE
Q 001538 69 ---NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 145 (1057)
Q Consensus 69 ---~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli 145 (1057)
.+.+.-++|+++++++-+-. .=+|..|+.++++|. ++.... ......-..|.||| +++..-+
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG-~Dri~~y~~~dg~L~--~~~~~~----------v~~G~GPRHi~FHp--n~k~aY~ 207 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLG-TDRIFLYDLDDGKLT--PADPAE----------VKPGAGPRHIVFHP--NGKYAYL 207 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecC-CceEEEEEcccCccc--cccccc----------cCCCCCcceEEEcC--CCcEEEE
Confidence 27788899999999876532 226666777788887 332211 12234579999999 7987777
Q ss_pred EEC-CCEEEEEEccCC--eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc-C
Q 001538 146 AYE-NALVILWDVSEA--QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-D 221 (1057)
Q Consensus 146 ~~~-dG~I~lWdl~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~-D 221 (1057)
..+ +++|.+|..... ++.. ++. ..- .|..-. -......+..+ |||++|.+.-. .
T Consensus 208 v~EL~stV~v~~y~~~~g~~~~-lQ~-----i~t---lP~dF~------------g~~~~aaIhis-~dGrFLYasNRg~ 265 (346)
T COG2706 208 VNELNSTVDVLEYNPAVGKFEE-LQT-----IDT---LPEDFT------------GTNWAAAIHIS-PDGRFLYASNRGH 265 (346)
T ss_pred EeccCCEEEEEEEcCCCceEEE-eee-----ecc---CccccC------------CCCceeEEEEC-CCCCEEEEecCCC
Confidence 777 789999998763 3221 111 000 112111 14456677888 99999887632 3
Q ss_pred CcEEEEeCCC
Q 001538 222 GDILLWNTST 231 (1057)
Q Consensus 222 G~I~lWd~~~ 231 (1057)
.+|.++.+..
T Consensus 266 dsI~~f~V~~ 275 (346)
T COG2706 266 DSIAVFSVDP 275 (346)
T ss_pred CeEEEEEEcC
Confidence 4788887754
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0016 Score=78.09 Aligned_cols=185 Identities=18% Similarity=0.223 Sum_probs=112.6
Q ss_pred CccccCCcEEEEcCCCeE-EEEEcCCCCCeeEEEEEcCCcEEEEEeCCC-----cEEEEECCCC---c---ee-----ee
Q 001538 1 MCLCRDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDN-----EIQVWSLESR---S---LA-----CC 63 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e-~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~-----~I~VWdl~s~---~---~l-----~t 63 (1057)
++||.+|+|.++.+.-.. .-+..-...-|.+|.-..++.+|++++.|. .|+|||++.. . ++ .+
T Consensus 39 vigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~ 118 (933)
T KOG2114|consen 39 VIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFT 118 (933)
T ss_pred EEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeec
Confidence 467777777777544322 122222222477777777778999999764 4999998753 1 22 11
Q ss_pred ecC---CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCC
Q 001538 64 LKW---ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 140 (1057)
Q Consensus 64 l~~---~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g 140 (1057)
++. +.++++++++.+...+++|..+|.|....=|.-+.+-+...|. .....||+++++.- ++
T Consensus 119 ~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-------------~~~~~pITgL~~~~--d~ 183 (933)
T KOG2114|consen 119 IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-------------HRGKEPITGLALRS--DG 183 (933)
T ss_pred cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-------------ccCCCCceeeEEec--CC
Confidence 122 3678999999999999999999976666545533222211111 12257899999986 56
Q ss_pred CeEEEEECCCEEEEEEccCCeE-EEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001538 141 NRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 219 (1057)
Q Consensus 141 ~~lli~~~dG~I~lWdl~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~ 219 (1057)
+-++-+...-.|.+|.+....+ ...... | ...+.|..|+ +....++++.
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~---------~--------------------G~~lnCss~~-~~t~qfIca~ 233 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDN---------N--------------------GISLNCSSFS-DGTYQFICAG 233 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeecc---------C--------------------CccceeeecC-CCCccEEEec
Confidence 6545555566677999873331 221221 1 3456677777 3333244443
Q ss_pred cCCcEEEEeCCC
Q 001538 220 IDGDILLWNTST 231 (1057)
Q Consensus 220 ~DG~I~lWd~~~ 231 (1057)
+.-|.|++...
T Consensus 234 -~e~l~fY~sd~ 244 (933)
T KOG2114|consen 234 -SEFLYFYDSDG 244 (933)
T ss_pred -CceEEEEcCCC
Confidence 35789998854
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.55 E-value=0.00015 Score=75.23 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=59.2
Q ss_pred CeEEEEEcCCC-CEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCc
Q 001538 555 PVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEE 633 (1057)
Q Consensus 555 ~ItsLa~S~~g-~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~ 633 (1057)
.|++++-.|.- +.+++|++||.+-|||.+..+..- ..+..|..+|..+-|++ .+..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~--S~l~ahk~~i~eV~FHp---------------------k~p~ 237 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV--SLLKAHKAEIWEVHFHP---------------------KNPE 237 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchH--HHHHHhhhhhhheeccC---------------------CCch
Confidence 39999999854 568899999999999998864322 22345899999999983 3456
Q ss_pred EEEEEecCCeEEEEeCCC
Q 001538 634 VIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 634 ~L~sgt~dg~i~v~d~~t 651 (1057)
.|+++++||++.-||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 799999999999999875
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.54 E-value=0.0003 Score=73.14 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=60.8
Q ss_pred CCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEE
Q 001538 127 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 206 (1057)
Q Consensus 127 ~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ 206 (1057)
..|.+++-||. ..+.+++|.++|.+-|||.+.......+ + ..| +.++..+.
T Consensus 180 ~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~-l-------~ah--------------------k~~i~eV~ 230 (319)
T KOG4714|consen 180 DAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSL-L-------KAH--------------------KAEIWEVH 230 (319)
T ss_pred ccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHH-H-------HHh--------------------hhhhhhee
Confidence 34999999996 5677889999999999999866322111 0 112 78999999
Q ss_pred EecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 207 WASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 207 ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
||+.++.+|+|.++||++.-||.++
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCCC
Confidence 9977889999999999999999975
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.52 E-value=0.0065 Score=63.71 Aligned_cols=196 Identities=9% Similarity=0.065 Sum_probs=115.8
Q ss_pred EEcCCcEEEEEeCCCcEEEEECCCCceeeee-c-CCCCEEEEEEecC-CcEEEEEccCCcEEEEEEeCCCCceeccCccc
Q 001538 34 FLQNQGFLISITNDNEIQVWSLESRSLACCL-K-WESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNI 110 (1057)
Q Consensus 34 F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl-~-~~~~Ita~~~sp~-~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i 110 (1057)
|.-.-++|+.+++-|...+|++.++....-+ . ....|+-+-=.-+ ..-+.+.+-|-+++++.++.+..+. .+
T Consensus 80 ~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~-----~~ 154 (344)
T KOG4532|consen 80 FINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF-----AV 154 (344)
T ss_pred hhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc-----ee
Confidence 3334468999999999999999877643222 1 1122221111111 1234556666666887776653322 22
Q ss_pred chhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE--EEEecCCcccccCCccCCCCCCCCCc
Q 001538 111 SADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTF 188 (1057)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~ 188 (1057)
++.+ -.+.+++.+| ++++++++++...|.+|.+..... +.+... +.
T Consensus 155 h~~~------------~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a-------------~t----- 202 (344)
T KOG4532|consen 155 HNQN------------LTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEA-------------PT----- 202 (344)
T ss_pred eccc------------cceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEec-------------cc-----
Confidence 2110 1377888999 788888888889999999965432 221111 00
Q ss_pred ccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCCccCCCCCCCCCcceeeecccccCCccEEEEEeecc
Q 001538 189 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTN 268 (1057)
Q Consensus 189 ~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~ 268 (1057)
+..=.+..|+ .+...+|+++.||++.+||+....++.-... + .-..+.+.++.++++..
T Consensus 203 ----------~D~gF~~S~s-~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s-s---------trp~hnGa~R~c~Fsl~ 261 (344)
T KOG4532|consen 203 ----------SDHGFYNSFS-ENDLQFAVVFQDGTCAIYDVRNMATPMAEIS-S---------TRPHHNGAFRVCRFSLY 261 (344)
T ss_pred ----------CCCceeeeec-cCcceEEEEecCCcEEEEEecccccchhhhc-c---------cCCCCCCceEEEEecCC
Confidence 2233578899 8889999999999999999987643211000 0 11125667888887742
Q ss_pred CcCCCCCCceEEEecCCCCCCcceEEEEE
Q 001538 269 KESRSNIDGRLFVYGGDEIGSEEVLTVLS 297 (1057)
Q Consensus 269 ~~~~~~~~~~Llv~gg~~~~~~~~ltvl~ 297 (1057)
+...-|+++-+-. -++|++
T Consensus 262 -----g~lDLLf~sEhfs-----~~hv~D 280 (344)
T KOG4532|consen 262 -----GLLDLLFISEHFS-----RVHVVD 280 (344)
T ss_pred -----CcceEEEEecCcc-----eEEEEE
Confidence 1234455554433 256665
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.49 E-value=0.0063 Score=65.58 Aligned_cols=148 Identities=14% Similarity=0.199 Sum_probs=93.2
Q ss_pred cCCcEEEEcCCCeEEEEEcCCCCCeeEEE--EEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEE
Q 001538 5 RDGRIKVIGGDGIEGLLISPSQLPYKNLE--FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 82 (1057)
Q Consensus 5 ~dG~I~v~g~~~~e~~~~~~~~~~v~~L~--F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l 82 (1057)
.+|+|..|...+.+.+-..+...+..... ...++++|++.+.++.|..||..+|+.+-....++.+... ....+..+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v 79 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRV 79 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccccc
Confidence 37899999975555444443322222222 5545568888899999999999999998777654433222 23456777
Q ss_pred EEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE
Q 001538 83 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 162 (1057)
Q Consensus 83 ~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~ 162 (1057)
++++.++ +++.+|..+|++. +++... . .+... -.....+.. .+.+++++..+|.|..+|+++|++
T Consensus 80 ~v~~~~~--~l~~~d~~tG~~~---W~~~~~---~---~~~~~--~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 80 YVGTSDG--SLYALDAKTGKVL---WSIYLT---S---SPPAG--VRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp EEEETTS--EEEEEETTTSCEE---EEEEE----S---SCTCS--TB--SEEEE--ETTEEEEEETCSEEEEEETTTTEE
T ss_pred cccccee--eeEecccCCccee---eeeccc---c---ccccc--cccccCceE--ecCEEEEEeccCcEEEEecCCCcE
Confidence 8888888 7888888888776 332100 0 00000 111112222 255688888899999999999999
Q ss_pred EEEecC
Q 001538 163 IFVGGG 168 (1057)
Q Consensus 163 ~~~~~~ 168 (1057)
+.....
T Consensus 145 ~w~~~~ 150 (238)
T PF13360_consen 145 LWKYPV 150 (238)
T ss_dssp EEEEES
T ss_pred EEEeec
Confidence 876654
No 301
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.49 E-value=0.0067 Score=71.31 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=80.9
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEE-eCC--CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TND--NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 83 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~-s~d--~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~ 83 (1057)
.+|+++...+.+...............|+||+..|+-. +.+ ..|.++|+.++....-...++..+...|+|+++.|+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~ 292 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIV 292 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEE
Confidence 34555554333322222233345567899999766643 333 467788888876433222333344567999998776
Q ss_pred EEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC---------CEEE
Q 001538 84 IGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN---------ALVI 153 (1057)
Q Consensus 84 vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d---------G~I~ 153 (1057)
..+ ..|...|+.+|.+.+... ++... + . ....|+| +|++|+..... ..|.
T Consensus 293 F~Sdr~g~~~Iy~~dl~~g~~~----rlt~~------g----~----~~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 293 FVSDRLGYPNIFMKKLNSGSVE----QVVFH------G----K----NNSSVST--YKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred EEECCCCCceEEEEECCCCCeE----eCccC------C----C----cCceECC--CCCEEEEEEcCCCcccCCCCcEEE
Confidence 655 456668888888765543 11100 0 0 1137999 68877766543 2677
Q ss_pred EEEccCCeEE
Q 001538 154 LWDVSEAQII 163 (1057)
Q Consensus 154 lWdl~~~~~~ 163 (1057)
+.|+.++...
T Consensus 353 v~d~~~g~~~ 362 (419)
T PRK04043 353 LISTNSDYIR 362 (419)
T ss_pred EEECCCCCeE
Confidence 8888877654
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0027 Score=75.65 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=118.0
Q ss_pred ccccCCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecC---
Q 001538 2 CLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISG--- 78 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~--- 78 (1057)
.||-+|.|+++.-++.-... ..+.. . .-.|.|+++++.||.|.|-.+.+.+..+++.+..+|.+++++|+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~-~~~s~-~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~ 126 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTN-FDHSS-S-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSR 126 (846)
T ss_pred eccccceEEEEecCCccccc-ccccc-c-----ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhh
Confidence 47888888888765532111 11111 1 44677999999999999999999999999999999999999997
Q ss_pred --CcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEE
Q 001538 79 --SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 156 (1057)
Q Consensus 79 --~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWd 156 (1057)
++.+++|+.-| +-+. . ++-+ .++..- ......++|.+|.|+ |+++|=+.++| |++||
T Consensus 127 ~~sk~fv~GG~ag-lvL~--e--r~wl---gnk~~v--------~l~~~eG~I~~i~W~----g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 127 QQSKQFVSGGMAG-LVLS--E--RNWL---GNKDSV--------VLSEGEGPIHSIKWR----GNLIAWANDDG-VKVYD 185 (846)
T ss_pred hhhhheeecCcce-EEEe--h--hhhh---cCccce--------eeecCccceEEEEec----CcEEEEecCCC-cEEEe
Confidence 66788888888 3221 1 1101 111110 123457899999998 55566666666 56999
Q ss_pred ccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 157 VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
+.+++.+..... +. ..-.+ +.--..++|. + ...++.|-.| +|++..+..
T Consensus 186 ~~~~~~l~~i~~-------------p~-~~~R~---------e~fpphl~W~-~-~~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 186 TPTRQRLTNIPP-------------PS-QSVRP---------ELFPPHLHWQ-D-EDRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred ccccceeeccCC-------------CC-CCCCc---------ccCCCceEec-C-CCeEEEecCC-eEEEEEEec
Confidence 999988765543 11 00000 2334578998 4 4568888877 788888873
No 303
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.43 E-value=0.0012 Score=71.22 Aligned_cols=159 Identities=18% Similarity=0.297 Sum_probs=112.6
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEE-CCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWS-LESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWd-l~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
++.++..+-|+..-..+++.+.|..+. |- .+++.-+..+.....-++..++-. +.++|...|.|.+..+++....+
T Consensus 113 h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~ 189 (404)
T KOG1409|consen 113 HQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQL 189 (404)
T ss_pred hhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCce
Confidence 456788888888777788887777774 54 455665555544333333333333 88999999999888887654333
Q ss_pred eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCC
Q 001538 104 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 104 ~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
. ++. .++..+|++++|.|. ..+|.+++.|-.|.+||+.-++-+...-+ -|
T Consensus 190 i---~~~------------~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~g~~~el~--------gh----- 239 (404)
T KOG1409|consen 190 I---TTF------------NGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRKGTAYELQ--------GH----- 239 (404)
T ss_pred E---EEE------------cCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCcceeeeec--------cc-----
Confidence 2 221 346778999999996 44799999999999999976655433222 02
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
...|..+++. +--..+.+...||-|.+|+++..
T Consensus 240 ---------------~~kV~~l~~~-~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 240 ---------------NDKVQALSYA-QHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ---------------hhhhhhhhhh-hhheeeeeccCCCeEEEEeccce
Confidence 6678888887 67788999999999999999653
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.002 Score=71.04 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=62.5
Q ss_pred CCCeeEEEEEcCC-cEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecC-CcEEEEEccCCcEEEEEEeCCC
Q 001538 26 QLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADE 100 (1057)
Q Consensus 26 ~~~v~~L~F~~~~-~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~-~~~l~vG~~~G~v~v~~~d~~~ 100 (1057)
+..|+.|+|+|.. |.|..++-++.|+|.|+++...+.++.....+++++|+-+ ..++|.|+.+|.|.|+++...+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 4569999999955 4788999999999999999999888877789999999976 5689999999966666554433
No 305
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.43 E-value=0.00081 Score=72.46 Aligned_cols=200 Identities=16% Similarity=0.221 Sum_probs=120.9
Q ss_pred ccccCCcEEEEcCCCe-------EEEEEcCC-----------CCCeeEEEEEcCCc--EEEEEeCCCcEEEEECCCCcee
Q 001538 2 CLCRDGRIKVIGGDGI-------EGLLISPS-----------QLPYKNLEFLQNQG--FLISITNDNEIQVWSLESRSLA 61 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~-------e~~~~~~~-----------~~~v~~L~F~~~~~--~Lvs~s~d~~I~VWdl~s~~~l 61 (1057)
+|..+|||-+|++.+. .-.+++.. ...|..+++.++++ .++..+.|.+|++|-+..+..-
T Consensus 42 tGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k 121 (433)
T KOG1354|consen 42 TGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSK 121 (433)
T ss_pred ecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccc
Confidence 5778899999987532 22333321 23578888888664 3444568999999998754321
Q ss_pred e---------------eec----------------------CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCcee
Q 001538 62 C---------------CLK----------------------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 62 ~---------------tl~----------------------~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~ 104 (1057)
. +++ +.-.|.++++..+...++++ .|=.|-+|+++.-++.
T Consensus 122 ~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~s-- 198 (433)
T KOG1354|consen 122 KEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQS-- 198 (433)
T ss_pred cccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCc--
Confidence 1 110 11346777887777776654 4566889998765543
Q ss_pred ccCcccchh---hhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEE-EEecCCcccccCCccCC
Q 001538 105 QLPYNISAD---ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDS 180 (1057)
Q Consensus 105 ~~~~~i~~~---~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~-~~~~~~~~~~~~~~~~~ 180 (1057)
|.|.-- ...+. ..-|++-.|||. ..+.++-.+..|+|+|-|++...+- .+.. -++ +
T Consensus 199 ---FnIVDIKP~nmEeL-------teVITsaEFhp~-~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK--lfE-------e 258 (433)
T KOG1354|consen 199 ---FNIVDIKPANMEEL-------TEVITSAEFHPH-HCNVFVYSSSKGTIRLCDMRQSALCDAHSK--LFE-------E 258 (433)
T ss_pred ---eeEEEccccCHHHH-------HHHHhhhccCHh-HccEEEEecCCCcEEEeechhhhhhcchhh--hhc-------c
Confidence 333210 00000 224788899997 4667888888999999999865431 1100 000 0
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
+..++. .+-+ ..-...|..+.|+ ++|+++++=. =.+|++||++-
T Consensus 259 -pedp~~-rsff---seiIsSISDvKFs-~sGryilsRD-yltvk~wD~nm 302 (433)
T KOG1354|consen 259 -PEDPSS-RSFF---SEIISSISDVKFS-HSGRYILSRD-YLTVKLWDLNM 302 (433)
T ss_pred -ccCCcc-hhhH---HHHhhhhhceEEc-cCCcEEEEec-cceeEEEeccc
Confidence 111110 0000 0114678889999 9999998753 27999999954
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.43 E-value=0.013 Score=62.59 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=113.9
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecC------CCeEEEEecCccEEEE
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI------NSSLAVGNEFGLVYIY 513 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd------~~~Lavg~~dG~V~l~ 513 (1057)
+.++++.+|+.++..|+|+++|+.+.++ +.+...... ...-..+|..+.|.+- +.+|.+-..+|.++=|
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~l---f~I~p~~~~--~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMGSEL---FVIPPAMSF--PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEeccccee---EEcCccccc--CCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4789999999999999999999987653 444432211 0112357888878653 2367777788888888
Q ss_pred EecCCCCccceeeeecCCCceEEeccCCcceeeEEEe--e-CCCCeEEEEEcCCCCEEEEEeCC------------ceEE
Q 001538 514 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS--L-VNSPVRALQFTSSGAKLAVGFEC------------GRVA 578 (1057)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~--~-h~~~ItsLa~S~~g~~lA~G~~d------------G~V~ 578 (1057)
-+..... ++|+-...++ . +...|+++.++|..++|.+|+.. | +.
T Consensus 125 ~vs~gt~--------------------q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~G-Lt 183 (282)
T PF15492_consen 125 LVSVGTN--------------------QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCG-LT 183 (282)
T ss_pred EEEcccC--------------------CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccC-ce
Confidence 7632111 1222112222 2 47799999999999998887532 3 67
Q ss_pred EEeCCCCeEEEEeecCCCCCCCeEE----EEEeeccCc--ccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCc
Q 001538 579 VLDMNLLSVLFFTDDISGSSSPIIS----MTWTEFKNT--HSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 652 (1057)
Q Consensus 579 vwDi~~~~~l~~~~~~~g~~~~V~s----l~f~~~~~~--~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg 652 (1057)
-|.+-....-|..-. .....++. ..|-....- .+.....++..-++..+||+..|++...+|+|.+|+..+.
T Consensus 184 aWRiL~~~Pyyk~v~--~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 184 AWRILSDSPYYKQVT--SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEEcCCCCcEEEcc--ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 787765544333211 11122211 111110000 0001112233345566799999999999999999998876
Q ss_pred ceeec
Q 001538 653 NMISS 657 (1057)
Q Consensus 653 ~~i~~ 657 (1057)
.++.+
T Consensus 262 ~~~~~ 266 (282)
T PF15492_consen 262 RLQRS 266 (282)
T ss_pred hhhcc
Confidence 55543
No 307
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.42 E-value=0.01 Score=63.20 Aligned_cols=184 Identities=13% Similarity=0.136 Sum_probs=118.4
Q ss_pred cCCcEEEEcCCCeE----EEEEcCCCCCeeEEEEEc---CCc-EEEEEeCCCcEEEEECCCCceeeeecC-C---CC---
Q 001538 5 RDGRIKVIGGDGIE----GLLISPSQLPYKNLEFLQ---NQG-FLISITNDNEIQVWSLESRSLACCLKW-E---SN--- 69 (1057)
Q Consensus 5 ~dG~I~v~g~~~~e----~~~~~~~~~~v~~L~F~~---~~~-~Lvs~s~d~~I~VWdl~s~~~l~tl~~-~---~~--- 69 (1057)
+.|.+++|.-...+ .+++-...+.+..|.|.- ++. .|+-+...|.|+++......-...+.. . -.
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 45788888643221 111222234455565543 232 466677889999998765554444431 1 11
Q ss_pred EEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC
Q 001538 70 ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN 149 (1057)
Q Consensus 70 Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d 149 (1057)
--++.+++.+.-++++..+|.+.+... .+..+. .-| .-++|.-+.+...|+-. +.+.+.+|++|
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~--t~~~le-------~vq------~wk~He~E~Wta~f~~~-~pnlvytGgDD 187 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYE--TEMVLE-------KVQ------TWKVHEFEAWTAKFSDK-EPNLVYTGGDD 187 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEec--ceeeee-------ecc------cccccceeeeeeecccC-CCceEEecCCC
Confidence 235677888999999999997774432 222221 100 11334556777788766 45789999999
Q ss_pred CEEEEEEcc-CCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEe
Q 001538 150 ALVILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 228 (1057)
Q Consensus 150 G~I~lWdl~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd 228 (1057)
|.+.-||++ .++.+ +.+. ++| ...|.|+.-++|++.+|+||+-|-.|++||
T Consensus 188 ~~l~~~D~R~p~~~i--~~n~------kvH--------------------~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 188 GSLSCWDIRIPKTFI--WHNS------KVH--------------------TSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred ceEEEEEecCCccee--eecc------eee--------------------ecceEEEecCCCCCceEEEeccccceeeee
Confidence 999999998 33333 2220 223 788999988878899999999999999999
Q ss_pred CCCC
Q 001538 229 TSTT 232 (1057)
Q Consensus 229 ~~~~ 232 (1057)
.+.-
T Consensus 240 tRnm 243 (339)
T KOG0280|consen 240 TRNM 243 (339)
T ss_pred hhcc
Confidence 9753
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0082 Score=66.35 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=65.0
Q ss_pred CCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeE
Q 001538 124 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 203 (1057)
Q Consensus 124 ~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vt 203 (1057)
.+...|..|+|+|...| ++..+..+..|.|.|+.+..++..+.. ...++
T Consensus 191 ~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a------------------------------~~~~w 239 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIA------------------------------YNQIW 239 (463)
T ss_pred ccchhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheec------------------------------cCCce
Confidence 34567999999997555 578888899999999999988876654 46899
Q ss_pred EEEEecCCCCEEEEEEcCCcEEEEeCCCCCc
Q 001538 204 ALCWASSSGSILAVGYIDGDILLWNTSTTAS 234 (1057)
Q Consensus 204 sl~ws~pdG~~latg~~DG~I~lWd~~~~~~ 234 (1057)
+.||.-.+.++|..|-..|.|.|+|+...+.
T Consensus 240 SC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 240 SCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 9999823456789999999999999987653
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.019 Score=68.55 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=57.0
Q ss_pred CeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEE
Q 001538 128 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 207 (1057)
Q Consensus 128 ~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~w 207 (1057)
.+++++|||. --.|+.+.+.|.+.+|.-.+.+....-.. | ..+|.-+.|
T Consensus 61 hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~htv~~t---------h--------------------~a~i~~l~w 109 (1416)
T KOG3617|consen 61 HATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETHTVVET---------H--------------------PAPIQGLDW 109 (1416)
T ss_pred ehhhhccChH--HHHHhhccccceeEEEecCCceeeeeccC---------C--------------------CCCceeEEe
Confidence 4678999994 44588899999999998766554332211 2 778999999
Q ss_pred ecCCCCEEEEEEcCCcEEEEeCC
Q 001538 208 ASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 208 s~pdG~~latg~~DG~I~lWd~~ 230 (1057)
+ ++|..++|++.=|.+.+|...
T Consensus 110 S-~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 110 S-HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred c-CCCCeEEEcCCCceeEEEEee
Confidence 9 999999999999999999875
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.33 E-value=0.02 Score=61.70 Aligned_cols=187 Identities=16% Similarity=0.192 Sum_probs=108.6
Q ss_pred CccccCCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeee-cCC----CCEEEEEE
Q 001538 1 MCLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWE----SNITAFSV 75 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl-~~~----~~Ita~~~ 75 (1057)
|+++.+|.|..|.....+.+-......++.......++ .++.++.++.|..+|..+|+++-.. ... .-......
T Consensus 40 ~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 118 (238)
T PF13360_consen 40 YVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP 118 (238)
T ss_dssp EEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE
T ss_pred EEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccc-ccccccceeeeEecccCCcceeeeeccccccccccccccCc
Confidence 35678899999986444444333322332222344444 5777778899999999999998774 321 12233444
Q ss_pred ecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCe-EEEEeCcCCCCCeEEEEECCCE-EE
Q 001538 76 ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV-VGVLPHPNSSGNRVLIAYENAL-VI 153 (1057)
Q Consensus 76 sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V-~sI~~sP~d~g~~lli~~~dG~-I~ 153 (1057)
...++.++++..+| .|+.+|..+|++.. .+.+..... .........+ ..+.+. ++ .+.++..+|. +.
T Consensus 119 ~~~~~~~~~~~~~g--~l~~~d~~tG~~~w-~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 119 AVDGDRLYVGTSSG--KLVALDPKTGKLLW-KYPVGEPRG----SSPISSFSDINGSPVIS---DG-RVYVSSGDGRVVA 187 (238)
T ss_dssp EEETTEEEEEETCS--EEEEEETTTTEEEE-EEESSTT-S----S--EEEETTEEEEEECC---TT-EEEEECCTSSEEE
T ss_pred eEecCEEEEEeccC--cEEEEecCCCcEEE-EeecCCCCC----CcceeeecccccceEEE---CC-EEEEEcCCCeEEE
Confidence 44588999999999 77888888887751 111111000 0000000111 222222 24 6888887884 55
Q ss_pred EEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 154 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
+ |+.+++.+..... ..+..+ .. .++..|+++..||.|..||+.++.
T Consensus 188 ~-d~~tg~~~w~~~~-------------------------------~~~~~~-~~-~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 188 V-DLATGEKLWSKPI-------------------------------SGIYSL-PS-VDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp E-ETTTTEEEEEECS-------------------------------S-ECEC-EE-CCCTEEEEEETTTEEEEEETTTTE
T ss_pred E-ECCCCCEEEEecC-------------------------------CCccCC-ce-eeCCEEEEEeCCCEEEEEECCCCC
Confidence 5 9999986632111 112221 23 567778888799999999998873
No 311
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.0031 Score=74.25 Aligned_cols=116 Identities=19% Similarity=0.283 Sum_probs=85.6
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
.+......++-|+.-|.|.+++-..+.+. .++. .+....++.+..+++..++|.|+..|.|.+|.+...
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~---~~~~-------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~- 108 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMR---KLKN-------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE- 108 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhh---cccc-------cCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-
Confidence 46777889999999999999997776532 1211 123346777888999999999999999999988662
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCC
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 584 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~ 584 (1057)
..... ..+.. .-..|+..||||+||++|..|-+|...|.|.+.-+..
T Consensus 109 ~p~~~----------~~~t~--------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDL----------DYVTP--------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcc----------eeecc--------ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21111 00000 1113788999999999999999999999998887766
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.019 Score=68.80 Aligned_cols=137 Identities=17% Similarity=0.265 Sum_probs=98.2
Q ss_pred cEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCcccee
Q 001538 446 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
+.++-|.-+|.|++.+....- .. ++ .|+.+ ..+|.++++++.||.|.|..+-+.....
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~-~~-----------~~-~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~--- 107 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNP-KT-----------NF-DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT--- 107 (846)
T ss_pred ceeeeccccceEEEEecCCcc-cc-----------cc-ccccc------ccCCceEEEecCCCcEEEeeccCCccce---
Confidence 468889999999998876431 00 01 12222 6789999999999999998775544321
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC-----CCEEEEEeCCceEEEEeCC--C-C-eEEEEeecCCC
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-----GAKLAVGFECGRVAVLDMN--L-L-SVLFFTDDISG 596 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~-----g~~lA~G~~dG~V~vwDi~--~-~-~~l~~~~~~~g 596 (1057)
.+ .-..++.+++++|+ .+.+++|+..| |.+...+ + . .++ .+.
T Consensus 108 ----------------------~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~-----l~~ 158 (846)
T KOG2066|consen 108 ----------------------QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV-----LSE 158 (846)
T ss_pred ----------------------eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee-----eec
Confidence 11 23568999999999 56899999999 7777542 1 1 111 122
Q ss_pred CCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 597 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 597 ~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
-.++|-++.|. |.+++-++++| |+|+|..+++.|+.-
T Consensus 159 ~eG~I~~i~W~------------------------g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 159 GEGPIHSIKWR------------------------GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred CccceEEEEec------------------------CcEEEEecCCC-cEEEeccccceeecc
Confidence 46799999997 78888888887 899999999988864
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.27 E-value=0.077 Score=62.18 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=99.5
Q ss_pred ccccCCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCE------EEEEE
Q 001538 2 CLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNI------TAFSV 75 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~I------ta~~~ 75 (1057)
+++.+|.+..|.....+.+-..+...++..--...++ .|+..+.++.|.-+|.++|+.+-.+....+. .+-.+
T Consensus 125 v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v 203 (394)
T PRK11138 125 IGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT 203 (394)
T ss_pred EEcCCCEEEEEECCCCCCcccccCCCceecCCEEECC-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE
Confidence 4556666766664332222222211222111112243 6777778899999999999987555432111 11111
Q ss_pred ecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEE
Q 001538 76 ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 155 (1057)
Q Consensus 76 sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lW 155 (1057)
....++++..+| .+..+|..++++. +..+.. ...+. ........+..+|.-.+.+|.++..+|.+..+
T Consensus 204 --~~~~v~~~~~~g--~v~a~d~~~G~~~---W~~~~~---~~~~~--~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 204 --AFGGAIVGGDNG--RVSAVLMEQGQLI---WQQRIS---QPTGA--TEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred --ECCEEEEEcCCC--EEEEEEccCChhh---heeccc---cCCCc--cchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 235688899999 6666777776654 211100 00000 00000111112231123358888889999999
Q ss_pred EccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 156 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
|+.+|+.+-.... . ....+. .++..|+.+..||.|..+|..++.
T Consensus 272 d~~tG~~~W~~~~------------------------------~-~~~~~~---~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 272 DLRSGQIVWKREY------------------------------G-SVNDFA---VDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred ECCCCCEEEeecC------------------------------C-CccCcE---EECCEEEEEcCCCeEEEEECCCCc
Confidence 9999988754332 0 001112 235677778889999999998774
No 314
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00076 Score=76.12 Aligned_cols=183 Identities=17% Similarity=0.234 Sum_probs=118.8
Q ss_pred ccccCCcEEEEcC----CCeE---EEEEc-CCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC---C---
Q 001538 2 CLCRDGRIKVIGG----DGIE---GLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW---E--- 67 (1057)
Q Consensus 2 vgt~dG~I~v~g~----~~~e---~~~~~-~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~---~--- 67 (1057)
.++.|-+||+|.- +++. +.++. .++-||..+.|..+-+++++ .|+.|.+||-.-++++..+.+ +
T Consensus 752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~ 829 (1034)
T KOG4190|consen 752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAG 829 (1034)
T ss_pred eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCC
Confidence 4688999999952 2221 33332 35678999999999988875 589999999998988876643 2
Q ss_pred CCEEEEEEecCCcEEEEE-ccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEE
Q 001538 68 SNITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 146 (1057)
Q Consensus 68 ~~Ita~~~sp~~~~l~vG-~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~ 146 (1057)
+.|.|+.- -+...+..| +...+|++++-... +|.-.+. .. .......-+.+|+..| .|+.++.+
T Consensus 830 ~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsc-------e~~~E~k----Vc-na~~Pna~~R~iaVa~--~GN~lAa~ 894 (1034)
T KOG4190|consen 830 GNIKCLEN-VDRHILIAGCSAESTVKLFDARSC-------EWTCELK----VC-NAPGPNALTRAIAVAD--KGNKLAAA 894 (1034)
T ss_pred ceeEeccc-Ccchheeeeccchhhheeeecccc-------cceeeEE----ec-cCCCCchheeEEEecc--CcchhhHH
Confidence 34555432 234455555 45565666543222 1222211 00 0112345689999998 69999999
Q ss_pred ECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEE
Q 001538 147 YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 226 (1057)
Q Consensus 147 ~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~l 226 (1057)
-.+|+|.+.|.++|+++..+..- +-...+++ . |....++....|.++.+
T Consensus 895 LSnGci~~LDaR~G~vINswrpm-----------------------------ecdllqla-a-psdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 895 LSNGCIAILDARNGKVINSWRPM-----------------------------ECDLLQLA-A-PSDQALAQSALDHSLAV 943 (1034)
T ss_pred hcCCcEEEEecCCCceeccCCcc-----------------------------cchhhhhc-C-chhHHHHhhcccceeEe
Confidence 99999999999999998765531 11222222 2 55566777777888888
Q ss_pred -EeCCCC
Q 001538 227 -WNTSTT 232 (1057)
Q Consensus 227 -Wd~~~~ 232 (1057)
|-..++
T Consensus 944 nWhaldg 950 (1034)
T KOG4190|consen 944 NWHALDG 950 (1034)
T ss_pred eehhcCC
Confidence 877665
No 315
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.001 Score=77.27 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=76.0
Q ss_pred CCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeE-EEEEcCCC
Q 001538 487 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR-ALQFTSSG 565 (1057)
Q Consensus 487 ~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~It-sLa~S~~g 565 (1057)
..|.-+.|+|.-..+|.+.++|.|.++++.-++ +.++.-|..+++ +|+|.|||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR--------------------------lwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQR--------------------------LWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccce--------------------------eEeccCCCCccceeeeecCCC
Confidence 367889999999999999999999999986322 234555677777 99999999
Q ss_pred CEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEe
Q 001538 566 AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 566 ~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~ 607 (1057)
++||+|..||+|++.|++.+..+..... ....+|+++.|.
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~l~~~~~--s~e~~is~~~w~ 114 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGRLVSFLF--SVETDISKGIWD 114 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCceecccc--ccccchheeecc
Confidence 9999999999999999999888766322 245678888886
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.0012 Score=71.27 Aligned_cols=130 Identities=15% Similarity=0.214 Sum_probs=94.9
Q ss_pred CCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCC-----ceeeeecCCCCEEEEEEec-CCcEEEEEccCCcEEEEEEeC
Q 001538 25 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-----SLACCLKWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDA 98 (1057)
Q Consensus 25 ~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~-----~~l~tl~~~~~Ita~~~sp-~~~~l~vG~~~G~v~v~~~d~ 98 (1057)
++..|-+++|...+..|+.+...|.|.+.||+.+ ...+.+.+++.||++..-. +..+|.+.+.+|.|++|++..
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 4566889999997878999999999999999875 4567778889999998776 788999999999999998765
Q ss_pred CCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecC
Q 001538 99 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 168 (1057)
Q Consensus 99 ~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~ 168 (1057)
-..+...+.|.=+-. ...-.-+..+|. +| .++.++.|+..+||.+..|.+..+...
T Consensus 331 ~K~~~~V~qYeGHvN------------~~a~l~~~v~~e-eg-~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVN------------LSAYLPAHVKEE-EG-SIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hhcccceeeeecccc------------cccccccccccc-cc-eEEEccCeeEEEEEecccCceeeccCC
Confidence 333222223422100 011112233443 45 488899999999999999999887654
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.07 E-value=0.11 Score=65.33 Aligned_cols=171 Identities=16% Similarity=0.194 Sum_probs=109.7
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCC---Cce
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE---GKL 103 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~---~~l 103 (1057)
..|..+.|..++.-++.+..+|.|.+=|..+..+-..=..+..|.+++|+|+.+++++.+..+++-+..++.+- ..+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 46899999998888888889999998898877664444457889999999999999999999987777654321 011
Q ss_pred -------eccCcccchhh----hhhhcC--CCC------------CCCCCeEEEEeCcCCCCCeEEEEE---CC--CEEE
Q 001538 104 -------FQLPYNISADA----LSEKAG--FPL------------LSHQPVVGVLPHPNSSGNRVLIAY---EN--ALVI 153 (1057)
Q Consensus 104 -------~~~~~~i~~~~----~~~~~g--~~~------------~~~~~V~sI~~sP~d~g~~lli~~---~d--G~I~ 153 (1057)
.+ .-.+.|-- .....| .+. .-.+.=++|.|.- ||.++++.+ .. ..|+
T Consensus 149 ~~d~~~~sk-~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg--Dg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 149 DADDERKSK-FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG--DGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred ccccccccc-cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc--CCcEEEEEEEeccCCceeEE
Confidence 00 00111110 000000 000 0122235688876 798888843 22 4889
Q ss_pred EEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc---CCcEEEEeCC
Q 001538 154 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI---DGDILLWNTS 230 (1057)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~---DG~I~lWd~~ 230 (1057)
+||-. |.+-..-. ....-=.+++|- |.|..+++-.. |++|.|+.-+
T Consensus 226 V~drE-g~Lns~se-----------------------------~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSE-----------------------------PVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred Eeccc-chhhcccC-----------------------------cccccccceeec-CCCCeEeeeeecCCCCcEEEEecC
Confidence 99865 44322211 113344689999 99999998754 5679998765
Q ss_pred C
Q 001538 231 T 231 (1057)
Q Consensus 231 ~ 231 (1057)
.
T Consensus 275 G 275 (1265)
T KOG1920|consen 275 G 275 (1265)
T ss_pred C
Confidence 4
No 318
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.03 E-value=0.52 Score=51.17 Aligned_cols=175 Identities=18% Similarity=0.184 Sum_probs=106.1
Q ss_pred ccCCcEEEEcCCCeEEE-EEcCCCCCeeEEEEE-cCCcEEEEEeCCCcEEEEECCCCceeeeecC------CCCEEEEEE
Q 001538 4 CRDGRIKVIGGDGIEGL-LISPSQLPYKNLEFL-QNQGFLISITNDNEIQVWSLESRSLACCLKW------ESNITAFSV 75 (1057)
Q Consensus 4 t~dG~I~v~g~~~~e~~-~~~~~~~~v~~L~F~-~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~------~~~Ita~~~ 75 (1057)
...|+|+.|...+.+.. +..+. ...+.|. +++ .|+.+.. +.+.++|+.+++....... ......+++
T Consensus 19 ~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v 93 (246)
T PF08450_consen 19 IPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAV 93 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEESSS---EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE
T ss_pred cCCCEEEEEECCCCeEEEEecCC---CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEE
Confidence 45688888876654443 34443 6677787 564 6666655 5556669999865333321 135678999
Q ss_pred ecCCcEEEEEccCCc-------EEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEE-E
Q 001538 76 ISGSHFMYIGDENGL-------MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA-Y 147 (1057)
Q Consensus 76 sp~~~~l~vG~~~G~-------v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~-~ 147 (1057)
+++++ +|+++.... =.||.++.+ ++... ... .......|+|+| +++.|.++ +
T Consensus 94 d~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~---~~~-------------~~~~pNGi~~s~--dg~~lyv~ds 153 (246)
T PF08450_consen 94 DPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTV---VAD-------------GLGFPNGIAFSP--DGKTLYVADS 153 (246)
T ss_dssp -TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEE---EEE-------------EESSEEEEEEET--TSSEEEEEET
T ss_pred cCCCC-EEEEecCCCccccccccceEEECCC-CeEEE---Eec-------------CcccccceEECC--cchheeeccc
Confidence 99998 555544321 168888876 44431 111 012367999999 67766654 4
Q ss_pred CCCEEEEEEccCC-e-EE--EEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCc
Q 001538 148 ENALVILWDVSEA-Q-II--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 223 (1057)
Q Consensus 148 ~dG~I~lWdl~~~-~-~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~ 223 (1057)
..+.|..|++... . +. ..+.. +. ......-.+++. ++|+..++.+..+.
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~--------~~------------------~~~g~pDG~~vD-~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFID--------FP------------------GGPGYPDGLAVD-SDGNLWVADWGGGR 206 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE---------S------------------SSSCEEEEEEEB-TTS-EEEEEETTTE
T ss_pred ccceeEEEeccccccceeeeeeEEE--------cC------------------CCCcCCCcceEc-CCCCEEEEEcCCCE
Confidence 5678888888632 2 22 12211 00 002346688999 89999998888999
Q ss_pred EEEEeCC
Q 001538 224 ILLWNTS 230 (1057)
Q Consensus 224 I~lWd~~ 230 (1057)
|.++|..
T Consensus 207 I~~~~p~ 213 (246)
T PF08450_consen 207 IVVFDPD 213 (246)
T ss_dssp EEEEETT
T ss_pred EEEECCC
Confidence 9999976
No 319
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.00 E-value=0.071 Score=57.98 Aligned_cols=171 Identities=12% Similarity=0.137 Sum_probs=101.7
Q ss_pred cCCcEEEEcC--CCeEEEEEcC----CCCCeeEEEEEcCCcEEEEEeCC--------CcEEEEECCCCceeeeecCCCCE
Q 001538 5 RDGRIKVIGG--DGIEGLLISP----SQLPYKNLEFLQNQGFLISITND--------NEIQVWSLESRSLACCLKWESNI 70 (1057)
Q Consensus 5 ~dG~I~v~g~--~~~e~~~~~~----~~~~v~~L~F~~~~~~Lvs~s~d--------~~I~VWdl~s~~~l~tl~~~~~I 70 (1057)
..+.+.++.. ..++.++..+ .......+.+.++|.+.++.... +.|..++.. ++.......-...
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p 136 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP 136 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc
Confidence 3455556642 2445555543 23457889999999766655533 446667766 4432222222445
Q ss_pred EEEEEecCCcEEEEEccCCcEEEEEEeCC--CCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC
Q 001538 71 TAFSVISGSHFMYIGDENGLMSVIKYDAD--EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE 148 (1057)
Q Consensus 71 ta~~~sp~~~~l~vG~~~G~v~v~~~d~~--~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~ 148 (1057)
..++++|+++.||+...... +||.|+.+ ...+. ..++-. .++ ......-.+++.. +|+..++.+.
T Consensus 137 NGi~~s~dg~~lyv~ds~~~-~i~~~~~~~~~~~~~--~~~~~~-------~~~-~~~g~pDG~~vD~--~G~l~va~~~ 203 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNG-RIWRFDLDADGGELS--NRRVFI-------DFP-GGPGYPDGLAVDS--DGNLWVADWG 203 (246)
T ss_dssp EEEEEETTSSEEEEEETTTT-EEEEEEEETTTCCEE--EEEEEE-------E-S-SSSCEEEEEEEBT--TS-EEEEEET
T ss_pred cceEECCcchheeecccccc-eeEEEecccccccee--eeeeEE-------EcC-CCCcCCCcceEcC--CCCEEEEEcC
Confidence 68999999999987655443 67777654 33232 111000 000 0112367889988 6887667778
Q ss_pred CCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001538 149 NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 219 (1057)
Q Consensus 149 dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~ 219 (1057)
.+.|.++|.. |+++....- + ...+++++|..++.+.|...+
T Consensus 204 ~~~I~~~~p~-G~~~~~i~~---------p--------------------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 204 GGRIVVFDPD-GKLLREIEL---------P--------------------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TTEEEEEETT-SCEEEEEE----------S--------------------SSSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEECCC-ccEEEEEcC---------C--------------------CCCEEEEEEECCCCCEEEEEe
Confidence 9999999987 887766543 1 357899999657877665543
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0022 Score=71.46 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=121.5
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEec-CccEEEEEecCCCCccc
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE-FGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~-dG~V~l~~~~~~~~~~~ 523 (1057)
-.++++++.||.+++|--+.-.- +...+ .+..|...|.+++.+-++..+++++. |..+++||+..-.....
T Consensus 20 a~fiiqASlDGh~KFWkKs~isG--vEfVK------hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm 91 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISG--VEFVK------HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM 91 (558)
T ss_pred hheEEeeecchhhhhcCCCCccc--eeehh------hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence 35899999999999997654220 01111 11245567888999999999999777 99999999875322110
Q ss_pred --------eeeeecCC--------------CceEEeccCCcceeeEE-EeeCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 001538 524 --------FLFVLETK--------------SEVHALPEGKISLCRAV-FSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 580 (1057)
Q Consensus 524 --------~~~~~~~~--------------~~~~~i~~~~g~~~~~~-~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vw 580 (1057)
+.....++ +.+..+....++++... -..|..+|.++.+++.+..+.+....|.|.-|
T Consensus 92 iKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyW 171 (558)
T KOG0882|consen 92 IKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYW 171 (558)
T ss_pred cccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEee
Confidence 00011122 22333333333332223 33599999999999999999999999999999
Q ss_pred eCCC------CeEEEEeec---C---CCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 581 DMNL------LSVLFFTDD---I---SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 581 Di~~------~~~l~~~~~---~---~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
.... .++.+.+.. + ..-..-.++++|+ |++..+.+-+.|..|++++
T Consensus 172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs----------------------p~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS----------------------PDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred cCCCcccCccccccccccccchhhcccccccCccceEEc----------------------cccCcccccCcccEEEEEE
Confidence 9874 223222211 0 0123456788887 7888899999999999999
Q ss_pred CCCcceee
Q 001538 649 GSSENMIS 656 (1057)
Q Consensus 649 ~~tg~~i~ 656 (1057)
..+|.++.
T Consensus 230 ~KtGklvq 237 (558)
T KOG0882|consen 230 FKTGKLVQ 237 (558)
T ss_pred eccchhhh
Confidence 99998764
No 321
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.96 E-value=0.031 Score=63.53 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=87.4
Q ss_pred CcEEEEcCCC-------eEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCc-eeeeecCC--CCEEEEEEe
Q 001538 7 GRIKVIGGDG-------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCLKWE--SNITAFSVI 76 (1057)
Q Consensus 7 G~I~v~g~~~-------~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~-~l~tl~~~--~~Ita~~~s 76 (1057)
|+|.||.-.. .+.+...+...+|.+|+-. ++ +|++ +.++.|.||++...+ +...-..+ ..++++.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~- 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV- 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEE-eecCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence 9999997554 3444455567889999988 33 4444 356999999999888 65444444 34555554
Q ss_pred cCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEE
Q 001538 77 SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 156 (1057)
Q Consensus 77 p~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWd 156 (1057)
-++++++|+....+.++.|+.+..++...... .....++++.|-++ ++.++++..+|.+.++.
T Consensus 138 -~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d--------------~~~~~v~~~~~l~d--~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 138 -FKNYILVGDAMKSVSLLRYDEENNKLILVARD--------------YQPRWVTAAEFLVD--EDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp -ETTEEEEEESSSSEEEEEEETTTE-EEEEEEE--------------SS-BEEEEEEEE-S--SSEEEEEETTSEEEEEE
T ss_pred -cccEEEEEEcccCEEEEEEEccCCEEEEEEec--------------CCCccEEEEEEecC--CcEEEEEcCCCeEEEEE
Confidence 47799999999989999998755444411000 01335888888763 34699999999998887
Q ss_pred cc
Q 001538 157 VS 158 (1057)
Q Consensus 157 l~ 158 (1057)
..
T Consensus 201 ~~ 202 (321)
T PF03178_consen 201 YN 202 (321)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 322
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.021 Score=70.38 Aligned_cols=95 Identities=22% Similarity=0.419 Sum_probs=69.9
Q ss_pred CEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCE
Q 001538 488 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 567 (1057)
Q Consensus 488 ~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~ 567 (1057)
++..++-+-.+..+++|+..|.|...|+..+-.. +. .=..-.++|++++|+.+|++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~---------------~~---------~ne~v~~~Vtsvafn~dg~~ 144 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP---------------LH---------QNERVQGPVTSVAFNQDGSL 144 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccch---------------hh---------cCCccCCcceeeEecCCCce
Confidence 3444444456678999999999999988664110 00 00013579999999999999
Q ss_pred EEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeec
Q 001538 568 LAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEF 609 (1057)
Q Consensus 568 lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~ 609 (1057)
++.|..+|.|.+||+..+.++..+.. +..|++++-+..+
T Consensus 145 l~~G~~~G~V~v~D~~~~k~l~~i~e---~~ap~t~vi~v~~ 183 (1206)
T KOG2079|consen 145 LLAGLGDGHVTVWDMHRAKILKVITE---HGAPVTGVIFVGR 183 (1206)
T ss_pred eccccCCCcEEEEEccCCcceeeeee---cCCccceEEEEEE
Confidence 99999999999999999888776654 6777777766643
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.14 Score=61.97 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=83.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCC-EEEEEEecCCCeEEEEecCc-----cEEEEE
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP-VSTLSFCFINSSLAVGNEFG-----LVYIYN 514 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~-V~~v~fspd~~~Lavg~~dG-----~V~l~~ 514 (1057)
+++.+..++-|..||.|-+.+-+-.. ++-+. .+... |+.+....+...|++-++|+ .|+||+
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~~~---~~~fq---------a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSFQL---IRGFQ---------AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred EcCCCceEEEeeccccEEEeccccee---eehhe---------ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEec
Confidence 56777789999999998887744322 12111 12223 55554444445676666654 589999
Q ss_pred ecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEe--C---CCCeEEE
Q 001538 515 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD--M---NLLSVLF 589 (1057)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwD--i---~~~~~l~ 589 (1057)
+.+-.... ++..++.++.-. ........++++|+.|.+-+.+|+|..+|.|..+. + ++.+..+
T Consensus 99 lek~~~n~-------sP~c~~~~ri~~-----~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 99 LEKVDKNN-------SPQCLYEHRIFT-----IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred ccccCCCC-------Ccceeeeeeeec-----cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee
Confidence 97643211 011121111000 01112467899999999999999999999988873 2 1122222
Q ss_pred EeecCCCCCCCeEEEEEe
Q 001538 590 FTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 590 ~~~~~~g~~~~V~sl~f~ 607 (1057)
.. ....|||.|+|.
T Consensus 167 ~~----~~~~pITgL~~~ 180 (933)
T KOG2114|consen 167 SH----RGKEPITGLALR 180 (933)
T ss_pred ec----cCCCCceeeEEe
Confidence 21 246899999997
No 324
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.83 E-value=0.02 Score=61.05 Aligned_cols=92 Identities=17% Similarity=0.355 Sum_probs=55.8
Q ss_pred CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCC----CCCCCCCeEEEEeCcCCCCCeE
Q 001538 68 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF----PLLSHQPVVGVLPHPNSSGNRV 143 (1057)
Q Consensus 68 ~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~----~~~~~~~V~sI~~sP~d~g~~l 143 (1057)
..||++.++..|.|+++|+..|. |.-+....- ..-+|+.-....+.-..+ +..-...|..|.|--+..-+++
T Consensus 27 d~ItaVefd~tg~YlatGDkgGR--Vvlfer~~s--~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGR--VVLFEREKS--YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ceeeEEEeccccceEeecCCCce--EEEeecccc--cccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 57999999999999999999994 444433221 100122211100000000 0112345778887543345578
Q ss_pred EEEECCCEEEEEEccCCeEE
Q 001538 144 LIAYENALVILWDVSEAQII 163 (1057)
Q Consensus 144 li~~~dG~I~lWdl~~~~~~ 163 (1057)
|....|.+|+||-+.+..+.
T Consensus 103 LlstNdktiKlWKiyeknlk 122 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLK 122 (460)
T ss_pred EEecCCceeeeeeeecccch
Confidence 99999999999999877544
No 325
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.00073 Score=67.25 Aligned_cols=65 Identities=23% Similarity=0.457 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhhchhhHHHHHHHHHHHhhcccccc
Q 001538 985 PRLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1056 (1057)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~kl~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~~~ 1056 (1057)
|...++..+|+. -+-.-+++-.+-+|+.+||||||-|-++||.|++++.+|-.-++.|.++ .|||
T Consensus 122 p~id~lskvkaq---v~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~----mw~~ 186 (217)
T KOG0859|consen 122 PEISKLAKVKAQ---VTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRK----MWFQ 186 (217)
T ss_pred cchhHHHHHHHH---HHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHH----HHHh
Confidence 445555555555 2223488999999999999999999999999999999999999888876 6886
No 326
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.73 E-value=0.69 Score=51.06 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=85.7
Q ss_pred CCCcEEEEEeCCCcEEEEecCCC-ceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCc
Q 001538 443 SVDRVYLAGYHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 521 (1057)
Q Consensus 443 ~~~~~liTG~~DGtVriWd~~~~-~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~ 521 (1057)
..++.|+.|..+| +.+++.+.. ....+ . +..+|+.+..-++-+.|++=+ ||.|++|++..-...
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~-----------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--L-----------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--e-----------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence 3456788888998 888887322 21111 1 112599999988877665543 599999998653221
Q ss_pred cceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEE---EcCCCCEEEEEeCCceEEEEeCCCC-----eEEEEeec
Q 001538 522 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ---FTSSGAKLAVGFECGRVAVLDMNLL-----SVLFFTDD 593 (1057)
Q Consensus 522 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa---~S~~g~~lA~G~~dG~V~vwDi~~~-----~~l~~~~~ 593 (1057)
.........+..... ..+ .....+...+ -...+.+|+++-.. +|.||....+ ..+..+.
T Consensus 70 ~~~~~~~~~~~~~~~----------~~~-~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~- 136 (275)
T PF00780_consen 70 STSAPLAFPKSRSLP----------TKL-PETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEIS- 136 (275)
T ss_pred ccccccccccccccc----------ccc-cccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEE-
Confidence 100000000000000 000 1112233333 12234456666665 7999988653 2333333
Q ss_pred CCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcce
Q 001538 594 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 654 (1057)
Q Consensus 594 ~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~ 654 (1057)
....+.+++|. +..|++|+.++ ..++|..+++.
T Consensus 137 ---lp~~~~~i~~~------------------------~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 137 ---LPDPPSSIAFL------------------------GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred ---cCCCcEEEEEe------------------------CCEEEEEeCCc-eEEEecCCCCc
Confidence 35788899987 45677777555 78888887665
No 327
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.70 E-value=0.0049 Score=43.98 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=33.0
Q ss_pred eeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001538 545 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 581 (1057)
Q Consensus 545 ~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwD 581 (1057)
+...+..|...|++++|++++.++++|+.||.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456678899999999999999999999999999996
No 328
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.56 E-value=1.2 Score=51.77 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=68.9
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcC
Q 001538 547 AVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREV 626 (1057)
Q Consensus 547 ~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~ 626 (1057)
..+......+.+|+.+|.+++.|+.+.-|+|.|+|+.++.+++... |..+. .+.|-...........+ ....+.
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK---GYRdA--qc~wi~~~~~~~~~~~~-~~~~~~ 374 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK---GYRDA--QCGWIEVPEEGDRDRSN-SNSPKS 374 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc---cCccc--eEEEEEeeccccccccc-ccccCC
Confidence 3455567789999999999999999999999999999998887654 34442 34444322110000000 000111
Q ss_pred CCCCCCcEEEEEecCCeEEEEeCCCcceeecCcc
Q 001538 627 PVNPAEEVIIVLFKDAKISIVGGSSENMISSSPW 660 (1057)
Q Consensus 627 ~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~i 660 (1057)
...+.--+++-+-.-|.|-||+..+|..+.+..+
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1112223344577899999999999998877644
No 329
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.55 E-value=0.006 Score=71.71 Aligned_cols=148 Identities=13% Similarity=0.135 Sum_probs=100.7
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-eEEEEecCccEEEEEecCCCCcccee
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAKNFL 525 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-~Lavg~~dG~V~l~~~~~~~~~~~~~ 525 (1057)
.+++-+.-.+| +|++....- ...+.-+.||..+|+.+.|.|... .||+++.|-.|..|+++.....
T Consensus 84 wiVsts~qkai-iwnlA~ss~--------~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p---- 150 (1081)
T KOG0309|consen 84 WIVSTSNQKAI-IWNLAKSSS--------NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP---- 150 (1081)
T ss_pred eEEecCcchhh-hhhhhcCCc--------cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc----
Confidence 44544443333 787654431 122233558999999999999877 6789999999999999764332
Q ss_pred eeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCC-CCeEEEEeecCCCCCCCeEEE
Q 001538 526 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN-LLSVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 526 ~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~-~~~~l~~~~~~~g~~~~V~sl 604 (1057)
+..+..-....+.++|+-....+.+.+....|.|||.+ ++..++.... |-+.|.++
T Consensus 151 --------------------~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~---~vs~vn~~ 207 (1081)
T KOG0309|consen 151 --------------------FYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG---HVSSVNSI 207 (1081)
T ss_pred --------------------eeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc---cceeeehH
Confidence 11222223445678888755555666666779999996 4466666543 88888899
Q ss_pred EEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 605 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 605 ~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
+|..... ..+.+.++||+|++||.+.
T Consensus 208 ~fnr~~~---------------------s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 208 DFNRFKY---------------------SEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred HHhhhhh---------------------hhhcccCCCCceeeecccc
Confidence 9874332 3478889999999999653
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.55 E-value=0.064 Score=62.25 Aligned_cols=166 Identities=14% Similarity=0.196 Sum_probs=96.6
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecC---------CCCEEEEEEec--------CCcEEEEEccC
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW---------ESNITAFSVIS--------GSHFMYIGDEN 88 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~---------~~~Ita~~~sp--------~~~~l~vG~~~ 88 (1057)
+.+|.+|+.+ |.|+++.+..+|.+.|.|++...+++.-.. ...|++++|.. ++-.|++|+..
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 6789999997 677999999999999999998888766421 24688888772 23479999999
Q ss_pred CcEEEEEEeCC-CCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCC-------------------CCCeEEEEEC
Q 001538 89 GLMSVIKYDAD-EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-------------------SGNRVLIAYE 148 (1057)
Q Consensus 89 G~v~v~~~d~~-~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d-------------------~g~~lli~~~ 148 (1057)
|++.++++.+. .+. |.+... +....+.++|..|..=-.+ .-..+++...
T Consensus 165 G~v~~fkIlp~~~g~-----f~v~~~------~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 165 GNVLTFKILPSSNGR-----FSVQFA------GATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp SEEEEEEEEE-GGG------EEEEEE------EEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred CCEEEEEEecCCCCc-----eEEEEe------eccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 99888887652 222 222210 0001223444444321000 1112667777
Q ss_pred CCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEe----cCCCCEEEEEEcCCcE
Q 001538 149 NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA----SSSGSILAVGYIDGDI 224 (1057)
Q Consensus 149 dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws----~pdG~~latg~~DG~I 224 (1057)
...++++.+.+.+..+.... + ......+++. ...+..|++-..||.|
T Consensus 234 e~~irv~~~~~~k~~~K~~~-~----------------------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFD-D----------------------------PFLCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp SSEEEEE-TT---EEEEE-S-S-----------------------------EEEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred ccceEEEeCCCCcccceeec-c----------------------------ccccceEEEEeecccCCceEEEEEECCCcE
Confidence 88888999887776543221 0 1223344552 0357789999999999
Q ss_pred EEEeCCCC
Q 001538 225 LLWNTSTT 232 (1057)
Q Consensus 225 ~lWd~~~~ 232 (1057)
+++.++.-
T Consensus 285 ~i~SLP~L 292 (395)
T PF08596_consen 285 RIYSLPSL 292 (395)
T ss_dssp EEEETTT-
T ss_pred EEEECCCc
Confidence 99999875
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.50 E-value=1 Score=47.75 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=69.7
Q ss_pred CcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhh-hhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEc
Q 001538 79 SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL-SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 157 (1057)
Q Consensus 79 ~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~-~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl 157 (1057)
..++++|+..| ++..+|...|++. |.+. ..+ -..++++ -|+.+++|+-+|.+.+-++
T Consensus 23 kT~v~igSHs~--~~~avd~~sG~~~-------We~ilg~R-----iE~sa~v--------vgdfVV~GCy~g~lYfl~~ 80 (354)
T KOG4649|consen 23 KTLVVIGSHSG--IVIAVDPQSGNLI-------WEAILGVR-----IECSAIV--------VGDFVVLGCYSGGLYFLCV 80 (354)
T ss_pred ceEEEEecCCc--eEEEecCCCCcEE-------eehhhCce-----eeeeeEE--------ECCEEEEEEccCcEEEEEe
Confidence 45788999999 7778888887775 2110 000 0012222 3667999999999999999
Q ss_pred cCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeE-EEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 158 SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS-ALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vt-sl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
++|.....|.- ...|. +.... +++..|..|+.|+....-|..+.
T Consensus 81 ~tGs~~w~f~~------------------------------~~~vk~~a~~d-~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 81 KTGSQIWNFVI------------------------------LETVKVRAQCD-FDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred cchhheeeeee------------------------------hhhhccceEEc-CCCceEEEecCCCcEEEeccccc
Confidence 99977765543 11222 22345 88999999999999999998764
No 332
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.013 Score=68.38 Aligned_cols=76 Identities=20% Similarity=0.363 Sum_probs=59.5
Q ss_pred CCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeE-E
Q 001538 126 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS-A 204 (1057)
Q Consensus 126 ~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vt-s 204 (1057)
...|.-+.|+|. -..+|++.++|.|.++.+. -+.+.++.- | ...++ +
T Consensus 20 ~~~i~~~ewnP~--~dLiA~~t~~gelli~R~n-~qRlwtip~---------p--------------------~~~v~~s 67 (665)
T KOG4640|consen 20 PINIKRIEWNPK--MDLIATRTEKGELLIHRLN-WQRLWTIPI---------P--------------------GENVTAS 67 (665)
T ss_pred ccceEEEEEcCc--cchhheeccCCcEEEEEec-cceeEeccC---------C--------------------CCcccee
Confidence 346888999994 5579999999998888887 333333332 1 33444 9
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEeCCCCCc
Q 001538 205 LCWASSSGSILAVGYIDGDILLWNTSTTAS 234 (1057)
Q Consensus 205 l~ws~pdG~~latg~~DG~I~lWd~~~~~~ 234 (1057)
+||. |||+.||+|..||+|++-|+.++..
T Consensus 68 L~W~-~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 68 LCWR-PDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred eeec-CCCCEEEEEecCCeEEEEEccCCCc
Confidence 9999 9999999999999999999998854
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.40 E-value=0.089 Score=63.08 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=91.8
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEe----------------------------------------C
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT----------------------------------------N 46 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s----------------------------------------~ 46 (1057)
+.+.+++.+..++..+..-...-..+.|.++++++.+.+ .
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~ 294 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG 294 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC
Confidence 455666666555555544333445667777777776654 3
Q ss_pred CCcEEEEECCC-----CceeeeecCCCCEEEEEEecCCcEEEEEcc-CCcEEEEEEeCCC----CceeccCcccchhhhh
Q 001538 47 DNEIQVWSLES-----RSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADE----GKLFQLPYNISADALS 116 (1057)
Q Consensus 47 d~~I~VWdl~s-----~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~-~G~v~v~~~d~~~----~~l~~~~~~i~~~~~~ 116 (1057)
++.|.|.|..+ ...+..+..+.....+.++|+++|+|++.. +.+|+|+++..-. +++. ..-.|.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~-~~~~vv----- 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK-PRDAVV----- 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC-ccceEE-----
Confidence 46799999988 466777777777888999999999988664 7888887764321 1111 000011
Q ss_pred hhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccC
Q 001538 117 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 159 (1057)
Q Consensus 117 ~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~ 159 (1057)
+.+.. ...-...+|.+ +|+...+-+-|..|..||+.+
T Consensus 369 ---aevev-GlGPLHTaFDg--~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 ---AEPEL-GLGPLHTAFDG--RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ---Eeecc-CCCcceEEECC--CCCEEEeEeecceeEEEehHH
Confidence 01111 22346778988 588778889999999999976
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.02 Score=64.17 Aligned_cols=199 Identities=15% Similarity=0.162 Sum_probs=121.4
Q ss_pred ccccCCcEEEEcCCCe---EEEEEc-CCCCCeeEEEEEcCCcEEEEEeC-CCcEEEEECCCCceeeeec---CCCCEEEE
Q 001538 2 CLCRDGRIKVIGGDGI---EGLLIS-PSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLK---WESNITAF 73 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~---e~~~~~-~~~~~v~~L~F~~~~~~Lvs~s~-d~~I~VWdl~s~~~l~tl~---~~~~Ita~ 73 (1057)
-|+.||.+|-|+..++ |.+-.. .+-..|..|+-+.++..+.+++. |..++++|+.+-....-++ .++.++++
T Consensus 25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv 104 (558)
T KOG0882|consen 25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV 104 (558)
T ss_pred eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe
Confidence 3678999999998664 333221 22356788888888866667676 9999999998766543333 34544443
Q ss_pred EEecCC--cEEEEEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC
Q 001538 74 SVISGS--HFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 150 (1057)
Q Consensus 74 ~~sp~~--~~l~vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG 150 (1057)
. +++. ..++++. .+| .+..+|... ...+..| +.+-|.+||..+.++| .+.-+++....|
T Consensus 105 ~-skGd~~s~IAVs~~~sg--~i~VvD~~~-d~~q~~~------------fkklH~sPV~~i~y~q--a~Ds~vSiD~~g 166 (558)
T KOG0882|consen 105 T-SKGDKISLIAVSLFKSG--KIFVVDGFG-DFCQDGY------------FKKLHFSPVKKIRYNQ--AGDSAVSIDISG 166 (558)
T ss_pred c-CCCCeeeeEEeecccCC--CcEEECCcC-CcCccce------------ecccccCceEEEEeec--cccceeeccccc
Confidence 3 2221 1344444 456 455555421 1110001 2234678999999999 466577777789
Q ss_pred EEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 151 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 151 ~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
.|.-|.... .....-..-.+.++++ .+.... .......++++|+ |+|..+.+-..|..|++++..
T Consensus 167 mVEyWs~e~-~~qfPr~~l~~~~K~e------------TdLy~f-~K~Kt~pts~Efs-p~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 167 MVEYWSAEG-PFQFPRTNLNFELKHE------------TDLYGF-PKAKTEPTSFEFS-PDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred eeEeecCCC-cccCcccccccccccc------------chhhcc-cccccCccceEEc-cccCcccccCcccEEEEEEec
Confidence 999999873 1100000001111110 000000 0125667899999 999999999999999999999
Q ss_pred CCC
Q 001538 231 TTA 233 (1057)
Q Consensus 231 ~~~ 233 (1057)
+|.
T Consensus 232 tGk 234 (558)
T KOG0882|consen 232 TGK 234 (558)
T ss_pred cch
Confidence 985
No 335
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.33 E-value=0.25 Score=45.90 Aligned_cols=103 Identities=21% Similarity=0.267 Sum_probs=69.1
Q ss_pred EEEEEEec---CC-CeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC
Q 001538 489 VSTLSFCF---IN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS 564 (1057)
Q Consensus 489 V~~v~fsp---d~-~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~ 564 (1057)
|++++++. |+ .+|++|++|..||+|+=..- ++ .+ .-...|++|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---------------~~------------Ei-~e~~~v~~L~~~~~ 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---------------VA------------EI-TETDKVTSLCSLGG 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---------------EE------------EE-ecccceEEEEEcCC
Confidence 55566554 32 48999999999999974211 11 11 24568899988877
Q ss_pred CCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCC-cEEEEEecCCe
Q 001538 565 GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE-EVIIVLFKDAK 643 (1057)
Q Consensus 565 g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~-~~L~sgt~dg~ 643 (1057)
+ .+|-|-.+|+|-|++-.. -++... ....++++++... ..|| .-|++|=.+|.
T Consensus 54 ~-~F~Y~l~NGTVGvY~~~~--RlWRiK----SK~~~~~~~~~D~-------------------~gdG~~eLI~GwsnGk 107 (111)
T PF14783_consen 54 G-RFAYALANGTVGVYDRSQ--RLWRIK----SKNQVTSMAFYDI-------------------NGDGVPELIVGWSNGK 107 (111)
T ss_pred C-EEEEEecCCEEEEEeCcc--eeeeec----cCCCeEEEEEEcC-------------------CCCCceEEEEEecCCe
Confidence 5 799999999999998743 345443 3455888877521 1222 45888888887
Q ss_pred EE
Q 001538 644 IS 645 (1057)
Q Consensus 644 i~ 645 (1057)
|-
T Consensus 108 ve 109 (111)
T PF14783_consen 108 VE 109 (111)
T ss_pred EE
Confidence 64
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.29 E-value=0.43 Score=51.70 Aligned_cols=172 Identities=17% Similarity=0.316 Sum_probs=96.0
Q ss_pred CeeEEEEEcCCcEEEEEeCC-CcEEEEECCCCceeeeecCC--CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCcee
Q 001538 28 PYKNLEFLQNQGFLISITND-NEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 28 ~v~~L~F~~~~~~Lvs~s~d-~~I~VWdl~s~~~l~tl~~~--~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~ 104 (1057)
.+..|+|.|+.+.|+++.++ +.|...++ +|+++..+... +....+++.-++.|+++--.++.+.++.++.....+.
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~ 101 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLD 101 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccc
Confidence 49999999988888888755 66766776 57888888644 6788888887776666555588777777755443222
Q ss_pred ccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccC---CeEEEEecCCcccccCCccCCC
Q 001538 105 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---AQIIFVGGGKDLQLKDGVVDSP 181 (1057)
Q Consensus 105 ~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~---~~~~~~~~~~~~~~~~~~~~~p 181 (1057)
... +.. -..+.+..++..+-.|+|.|. +++|+++-+..-..||.+.. +.........+..
T Consensus 102 ~~~--~~~----~~l~~~~~~N~G~EGla~D~~--~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~--------- 164 (248)
T PF06977_consen 102 RAD--VQK----ISLGFPNKGNKGFEGLAYDPK--TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD--------- 164 (248)
T ss_dssp EEE--EEE----EE---S---SS--EEEEEETT--TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---------
T ss_pred hhh--ceE----EecccccCCCcceEEEEEcCC--CCEEEEEeCCCChhhEEEccccCccceeeccccccc---------
Confidence 100 000 011233345667999999994 66799998887777777754 2222111110000
Q ss_pred CCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeC
Q 001538 182 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 229 (1057)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~ 229 (1057)
........+.++++++..|..++....+..|..+|.
T Consensus 165 ------------~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 165 ------------DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp -------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred ------------cccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 011124568899999445666777778888988884
No 337
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.25 E-value=0.11 Score=63.05 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=102.7
Q ss_pred eeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccC
Q 001538 29 YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 107 (1057)
Q Consensus 29 v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~ 107 (1057)
|+-|+. |+++|.++++.|+|.+-|..+-+..+++. +.+.|..|.+ .|+.|++..-+++-..+..|.- . +-
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~F----v-kV 250 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPF----V-KV 250 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccch----h-hh
Confidence 555554 67789999999999999999999999996 4577766655 7888888777763323333321 0 01
Q ss_pred cccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEE---ccCCeEEEEecCCcccccCCccCCCCCC
Q 001538 108 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD---VSEAQIIFVGGGKDLQLKDGVVDSPSEG 184 (1057)
Q Consensus 108 ~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWd---l~~~~~~~~~~~~~~~~~~~~~~~p~~~ 184 (1057)
|-+... ++ -.|-.-+..-.-+.|+|. ..+++++++..|...+-| +..-..-.... +
T Consensus 251 YDLRmm---ra-l~PI~~~~~P~flrf~Ps-l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v----------~------ 309 (1118)
T KOG1275|consen 251 YDLRMM---RA-LSPIQFPYGPQFLRFHPS-LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV----------N------ 309 (1118)
T ss_pred hhhhhh---hc-cCCcccccCchhhhhccc-ccceEEEEecccceeeccccccCCCccceeEE----------c------
Confidence 222211 00 011111111256789997 678899999999987777 32211100000 0
Q ss_pred CCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEe
Q 001538 185 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 228 (1057)
Q Consensus 185 ~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd 228 (1057)
...+.++..+++ ++|..++.|..+|.|.+|.
T Consensus 310 ------------p~~s~i~~fDiS-sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 310 ------------PNGSGISAFDIS-SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ------------cCCCcceeEEec-CCCceEEEecccCcEeeec
Confidence 114558999999 9999999999999999997
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.20 E-value=0.037 Score=65.55 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=85.3
Q ss_pred EEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEe
Q 001538 493 SFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 572 (1057)
Q Consensus 493 ~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~ 572 (1057)
+++..+.+++.|+..|.|++|.=..+... .....+..+.++.+..|++..++|.|+
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~------------------------~~~~~~~~~~~~~~~vs~~e~lvAagt 95 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMR------------------------KLKNEGATGITCVRSVSSVEYLVAAGT 95 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhh------------------------cccccCccceEEEEEecchhHhhhhhc
Confidence 45677889999999999999974433211 111222456678888999998999999
Q ss_pred CCceEEEEeCCC---CeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 573 ECGRVAVLDMNL---LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 573 ~dG~V~vwDi~~---~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
..|.|.|+-++. +.+++...+-..|+..||+|+|+ +++..+++|...|.|...-+
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws----------------------~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS----------------------KNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEec----------------------ccccEEeecCCCceEEEEEe
Confidence 999999998854 23444443322378899999999 78889999999999999887
Q ss_pred CC
Q 001538 650 SS 651 (1057)
Q Consensus 650 ~t 651 (1057)
.+
T Consensus 154 ~s 155 (726)
T KOG3621|consen 154 DS 155 (726)
T ss_pred ch
Confidence 77
No 339
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.15 E-value=0.35 Score=53.36 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=100.4
Q ss_pred ccCCCCcEEEEE-----eCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEE
Q 001538 440 KCHSVDRVYLAG-----YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 514 (1057)
Q Consensus 440 ~~~~~~~~liTG-----~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~ 514 (1057)
.|++++++|.|- ...|.|-+||+.. .+..+..+ +.+..--..|.+.||+..|+++.. -|.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~---------~s~GIGPHel~l~pDG~tLvVANG--GI~--- 121 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEF---------PSHGIGPHELLLMPDGETLVVANG--GIE--- 121 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEe---------cCCCcChhhEEEcCCCCEEEEEcC--CCc---
Confidence 478888888774 5567899999983 22222222 223333445778999999999854 221
Q ss_pred ecCCCCccce-eeeecCCCceEEeccCCccee-eEEE--eeCCCCeEEEEEcCCCCEEEEEeC-Cc-------eEEEEeC
Q 001538 515 LNGSLDAKNF-LFVLETKSEVHALPEGKISLC-RAVF--SLVNSPVRALQFTSSGAKLAVGFE-CG-------RVAVLDM 582 (1057)
Q Consensus 515 ~~~~~~~~~~-~~~~~~~~~~~~i~~~~g~~~-~~~~--~~h~~~ItsLa~S~~g~~lA~G~~-dG-------~V~vwDi 582 (1057)
+++..+.. .++......+.-++...|-.. ...+ ..|.-.|.-|+++++| .++.|.+ .| -|.+++.
T Consensus 122 --Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~ 198 (305)
T PF07433_consen 122 --THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRR 198 (305)
T ss_pred --cCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcC
Confidence 11111000 011111122222322222211 1123 3477789999999999 4555432 22 3444544
Q ss_pred CCCeEEEEeec--CCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEE-EEEecCCeEEEEeCCCcceeecC
Q 001538 583 NLLSVLFFTDD--ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI-IVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 583 ~~~~~l~~~~~--~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L-~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
...-.++.... ...-...|-||+|+ .++.++ ++.=.-+.+.+||..+|.++...
T Consensus 199 g~~~~~~~~p~~~~~~l~~Y~gSIa~~----------------------~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 199 GGALRLLPAPEEQWRRLNGYIGSIAAD----------------------RDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCcceeccCChHHHHhhCCceEEEEEe----------------------CCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 33222221110 11245688899998 666555 55558899999999999999876
No 340
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.14 E-value=0.36 Score=60.80 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=104.3
Q ss_pred CccccCCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEEC----CCCcee----------eeecC
Q 001538 1 MCLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL----ESRSLA----------CCLKW 66 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl----~s~~~l----------~tl~~ 66 (1057)
+|++.+|+|.+-.....+......-...|.+++|+||+..|+-++..+++.+-+- -.-+.+ -+..|
T Consensus 84 ~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGw 163 (1265)
T KOG1920|consen 84 CVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGW 163 (1265)
T ss_pred EEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecc
Confidence 3677788888776554443333444567999999999999999988888865432 111211 11111
Q ss_pred -------------------------------CCCEEEEEEecCCcEEEEE---ccC--CcEEEEEEeCCCCceeccCccc
Q 001538 67 -------------------------------ESNITAFSVISGSHFMYIG---DEN--GLMSVIKYDADEGKLFQLPYNI 110 (1057)
Q Consensus 67 -------------------------------~~~Ita~~~sp~~~~l~vG---~~~--G~v~v~~~d~~~~~l~~~~~~i 110 (1057)
+..=+.++|--+|+|+++. .+. ..++||. .+ +.|-.+.
T Consensus 164 GrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d--rE-g~Lns~s--- 237 (1265)
T KOG1920|consen 164 GRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD--RE-GALNSTS--- 237 (1265)
T ss_pred cccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec--cc-chhhccc---
Confidence 1122457788888888772 233 4455554 43 3333100
Q ss_pred chhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC---CEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCC
Q 001538 111 SADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDST 187 (1057)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d---G~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 187 (1057)
.+...-=.+++|-| .|..+++...+ +.|++|.- .|-....|.- . -
T Consensus 238 ------------e~~~~l~~~LsWkP--sgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l-----~------------~ 285 (1265)
T KOG1920|consen 238 ------------EPVEGLQHSLSWKP--SGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVL-----P------------F 285 (1265)
T ss_pred ------------CcccccccceeecC--CCCeEeeeeecCCCCcEEEEec-CCcccccccc-----C------------C
Confidence 11112235788999 58777776554 34555542 1111111100 0 0
Q ss_pred cccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc--CCc-EEEEeCCCC
Q 001538 188 FLEGISEHQPEEKEISALCWASSSGSILAVGYI--DGD-ILLWNTSTT 232 (1057)
Q Consensus 188 ~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~--DG~-I~lWd~~~~ 232 (1057)
. ....+|..++|+ .++..|++... -++ |.+|-+.+.
T Consensus 286 p--------~de~~ve~L~Wn-s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 286 P--------LDEKEVEELAWN-SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred c--------ccccchheeeec-CCCCceeeeecccccceEEEEEecCe
Confidence 0 013449999999 89988887333 234 999988654
No 341
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.02 E-value=0.55 Score=51.87 Aligned_cols=165 Identities=15% Similarity=0.206 Sum_probs=92.3
Q ss_pred eeEEEEEcCCcEEEEEeCC-----CcEEEEECC-CCceeeeecCCC-CEEEEEEecCCcEEEEEccCCcEEE--------
Q 001538 29 YKNLEFLQNQGFLISITND-----NEIQVWSLE-SRSLACCLKWES-NITAFSVISGSHFMYIGDENGLMSV-------- 93 (1057)
Q Consensus 29 v~~L~F~~~~~~Lvs~s~d-----~~I~VWdl~-s~~~l~tl~~~~-~Ita~~~sp~~~~l~vG~~~G~v~v-------- 93 (1057)
.=+-.|++||.+|++.-+| |.|-|||.. +-+.+..+...+ .-.-+.+.|+++.|+++- |-|..
T Consensus 53 yGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN--GGI~Thpd~GR~k 130 (305)
T PF07433_consen 53 YGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN--GGIETHPDSGRAK 130 (305)
T ss_pred ecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc--CCCccCcccCcee
Confidence 3367799999999998654 789999998 344455554322 123456889998888863 32211
Q ss_pred EE----------EeCCCCceeccCcccchhhhhhhcCCC-CCCCCCeEEEEeCcCCCCCeEEEEECC-CE-----EEEEE
Q 001538 94 IK----------YDADEGKLFQLPYNISADALSEKAGFP-LLSHQPVVGVLPHPNSSGNRVLIAYEN-AL-----VILWD 156 (1057)
Q Consensus 94 ~~----------~d~~~~~l~~~~~~i~~~~~~~~~g~~-~~~~~~V~sI~~sP~d~g~~lli~~~d-G~-----I~lWd 156 (1057)
++ +|..+|.+. +...++ .-+.-.+..+++.+ +|. ++.+.-. |. -.|.-
T Consensus 131 LNl~tM~psL~~ld~~sG~ll------------~q~~Lp~~~~~lSiRHLa~~~--~G~-V~~a~Q~qg~~~~~~PLva~ 195 (305)
T PF07433_consen 131 LNLDTMQPSLVYLDARSGALL------------EQVELPPDLHQLSIRHLAVDG--DGT-VAFAMQYQGDPGDAPPLVAL 195 (305)
T ss_pred cChhhcCCceEEEecCCCcee------------eeeecCccccccceeeEEecC--CCc-EEEEEecCCCCCccCCeEEE
Confidence 11 122222221 011121 12345689999998 575 6666432 11 11222
Q ss_pred ccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEE-cCCcEEEEeCCCCC
Q 001538 157 VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTSTTA 233 (1057)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~-~DG~I~lWd~~~~~ 233 (1057)
.+.++....+... . .. ...-...+-+++++ ++|..|++.+ .-|.+.+||..++.
T Consensus 196 ~~~g~~~~~~~~p------------~----~~------~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 196 HRRGGALRLLPAP------------E----EQ------WRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred EcCCCcceeccCC------------h----HH------HHhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECCCCC
Confidence 2222222111110 0 00 00115789999999 9998775554 56899999998874
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.93 E-value=0.62 Score=56.13 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=91.6
Q ss_pred CCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEc---cCCcEEEEEEeCCCCceeccCcccch-----------
Q 001538 47 DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD---ENGLMSVIKYDADEGKLFQLPYNISA----------- 112 (1057)
Q Consensus 47 d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~---~~G~v~v~~~d~~~~~l~~~~~~i~~----------- 112 (1057)
.+.+.+.|.++.+...++..+++..-+.++++++|+++.+ +.|. .+-.++..+.... ..|.+..
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~-tl~em~a~e~d~~-vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGV-TLAEMMAAERDWV-VVFNIARIEEAVKAGKFK 291 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCc-ceeeeccccCceE-EEEchHHHHHhhhCCCEE
Confidence 3567788888888777777677777789999999999986 4443 2333322111000 0011100
Q ss_pred ---hhhhhhcCCCC------------CCCCCeEEEEeCcCCCCCeEEEEEC-CCEEEEEEccCCeEEEEecCCcccccCC
Q 001538 113 ---DALSEKAGFPL------------LSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDG 176 (1057)
Q Consensus 113 ---~~~~~~~g~~~------------~~~~~V~sI~~sP~d~g~~lli~~~-dG~I~lWdl~~~~~~~~~~~~~~~~~~~ 176 (1057)
...-..+.... .-......|.++| +|++++++.. +.+|.+.|+.+.+.. |..+ +..+..
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP--DGkylyVanklS~tVSVIDv~k~k~~--~~~~-~~~~~~ 366 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP--DGKYFIANGKLSPTVTVIDVRKLDDL--FDGK-IKPRDA 366 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEEECCCCccceEECC--CCCEEEEeCCCCCcEEEEEChhhhhh--hhcc-CCccce
Confidence 00000000000 0123456889999 7998877765 679999999875532 1110 000000
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 177 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 177 ~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
+.-+|. ....-....|. ++|....|-+.|..|..||+.+
T Consensus 367 vvaeve---------------vGlGPLHTaFD-g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPE---------------LGLGPLHTAFD-GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeec---------------cCCCcceEEEC-CCCCEEEeEeecceeEEEehHH
Confidence 000000 01122356788 8999889999999999999976
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.88 E-value=0.13 Score=47.65 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=61.6
Q ss_pred CccccCCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEE-ecCC
Q 001538 1 MCLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSV-ISGS 79 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~-sp~~ 79 (1057)
+|||.|..||||..+ +.+.+......|..|.-+..+ +++-+-.+|+|-|++-..+ +=.++....++++.. +.++
T Consensus 19 lvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~~~R--lWRiKSK~~~~~~~~~D~~g 93 (111)
T PF14783_consen 19 LVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGG-RFAYALANGTVGVYDRSQR--LWRIKSKNQVTSMAFYDING 93 (111)
T ss_pred EEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCC-EEEEEecCCEEEEEeCcce--eeeeccCCCeEEEEEEcCCC
Confidence 589999999999766 466667777889999998886 6777778999998875222 222344455666554 3332
Q ss_pred ---cEEEEEccCCcEE
Q 001538 80 ---HFMYIGDENGLMS 92 (1057)
Q Consensus 80 ---~~l~vG~~~G~v~ 92 (1057)
.-|++|-.+|.|.
T Consensus 94 dG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 94 DGVPELIVGWSNGKVE 109 (111)
T ss_pred CCceEEEEEecCCeEE
Confidence 2688999999553
No 344
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.68 E-value=0.071 Score=64.74 Aligned_cols=143 Identities=16% Similarity=0.187 Sum_probs=97.3
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCcc---------EEE
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL---------VYI 512 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~---------V~l 512 (1057)
...++.+.+|+..|+|-+-|..+-+ .++++ +.|+..|.. |+-.|+.|++++.++. |+|
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~--~iht~---------~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFE--TIHTF---------DAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCc--eeeee---------eccccceee--eeccCCeEEEeecccccccccccchhhh
Confidence 4456789999999999999988765 34443 357677774 5556788888877653 567
Q ss_pred EEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCC-CEEEEEeCCceEEEEe---CCCC-eE
Q 001538 513 YNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLD---MNLL-SV 587 (1057)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g-~~lA~G~~dG~V~vwD---i~~~-~~ 587 (1057)
||++.-+.. ..|+ .+.++ .=+.|.|.. ..+|+.|..|..-+.| +..+ .-
T Consensus 251 YDLRmmral-------------~PI~------------~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~ 304 (1118)
T KOG1275|consen 251 YDLRMMRAL-------------SPIQ------------FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG 304 (1118)
T ss_pred hhhhhhhcc-------------CCcc------------cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccc
Confidence 776543321 1111 12222 224555643 4799999999999999 5555 22
Q ss_pred EEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 588 LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 588 l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
++..+. ..+.+.++.++ +.++.|+.|..+|.|.+|-
T Consensus 305 ~~~v~p---~~s~i~~fDiS----------------------sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 305 VKMVNP---NGSGISAFDIS----------------------SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeEEcc---CCCcceeEEec----------------------CCCceEEEecccCcEeeec
Confidence 344433 34558888887 6789999999999999997
No 345
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.52 Score=51.03 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=117.2
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCC--CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCcee
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~--~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~ 104 (1057)
..+..|.|.|+.+.|+++.+...-.||=-..|.++.+++.. +.-.++++..++.|.++--.++.+.++.+|.++..+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 44899999999999999999888888888889999998754 4566788888888888777788888888888765444
Q ss_pred ccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCe-EEEEecCCcccccCCccCCCCC
Q 001538 105 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSE 183 (1057)
Q Consensus 105 ~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~-~~~~~~~~~~~~~~~~~~~p~~ 183 (1057)
...+.++-. .....+...-.++|.|. ..+|..+=+-.-+.||.+..+. ....-.. .
T Consensus 166 ~~~~~i~L~-------~~~k~N~GfEGlA~d~~--~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~--------------~ 222 (316)
T COG3204 166 AKVQKIPLG-------TTNKKNKGFEGLAWDPV--DHRLFVAKERNPIGIFEVTQSPSSLSVHAS--------------L 222 (316)
T ss_pred ccceEEecc-------ccCCCCcCceeeecCCC--CceEEEEEccCCcEEEEEecCCcccccccc--------------c
Confidence 222233211 11122556789999995 4467888777766666654221 1100000 0
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 184 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
.+....+ ..-..|+++.|+.++++.+|-+++++.|.--|..
T Consensus 223 ~~~~~~~------~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 223 DPTADRD------LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred Ccccccc------eEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 0011100 1145788899985677888888888888777764
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.61 E-value=0.57 Score=58.39 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=70.0
Q ss_pred EEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEE
Q 001538 501 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 580 (1057)
Q Consensus 501 Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vw 580 (1057)
..+|-.+..+..||.+-.... +.. .++. .+ ......+|++-+.+| +||+|+.+|.|+|+
T Consensus 545 tflGls~n~lfriDpR~~~~k------------~v~---~~~k----~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLy 603 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNK------------LVD---SQSK----QY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLY 603 (794)
T ss_pred eEEEECCCceEEeccCCCCCc------------eee---cccc----cc-ccCCCceEEEecCCc-eEEEEeCCCcEEee
Confidence 456777778888887643311 110 0010 11 245578999999999 99999999999999
Q ss_pred eCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 581 DMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 581 Di~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
|..+.+ -...+.+...||+.|..+ .||++|++ |-+-.|.++|.
T Consensus 604 d~~g~~---AKT~lp~lG~pI~~iDvt----------------------~DGkwila-Tc~tyLlLi~t 646 (794)
T PF08553_consen 604 DRLGKR---AKTALPGLGDPIIGIDVT----------------------ADGKWILA-TCKTYLLLIDT 646 (794)
T ss_pred cccchh---hhhcCCCCCCCeeEEEec----------------------CCCcEEEE-eecceEEEEEE
Confidence 964422 112345678999999987 89999875 55667888875
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.19 Score=57.94 Aligned_cols=182 Identities=15% Similarity=0.167 Sum_probs=117.1
Q ss_pred ccCCcEEEEcC-CCeEEEEEcC--------CCCCeeEEEEEcCCcEEE-EEeCCCcEEEEECCCCceeeeecCCCCEEEE
Q 001538 4 CRDGRIKVIGG-DGIEGLLISP--------SQLPYKNLEFLQNQGFLI-SITNDNEIQVWSLESRSLACCLKWESNITAF 73 (1057)
Q Consensus 4 t~dG~I~v~g~-~~~e~~~~~~--------~~~~v~~L~F~~~~~~Lv-s~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~ 73 (1057)
|++.+|-||+. +++++.+... +..|-+.|-.-.+...|+ ++...+.+.-.|++.|+++....++..|+-+
T Consensus 302 ~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv 381 (644)
T KOG2395|consen 302 TRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMV 381 (644)
T ss_pred EecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCcCcceeeecccceeeeEeeccCCccee
Confidence 56788888874 5666666543 123555566666555444 4456688999999999999999888778878
Q ss_pred EEecCCcE-------EEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEE
Q 001538 74 SVISGSHF-------MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 146 (1057)
Q Consensus 74 ~~sp~~~~-------l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~ 146 (1057)
.+.|+.++ -++|..+. +|+.+|+.-. ..-.+.+.+.... .......|.+-.- +| ++++|
T Consensus 382 ~~t~d~K~~Ql~~e~TlvGLs~n--~vfriDpRv~----~~~kl~~~q~kqy-----~~k~nFsc~aTT~--sG-~Ivvg 447 (644)
T KOG2395|consen 382 DITPDFKFAQLTSEQTLVGLSDN--SVFRIDPRVQ----GKNKLAVVQSKQY-----STKNNFSCFATTE--SG-YIVVG 447 (644)
T ss_pred eccCCcchhcccccccEEeecCC--ceEEeccccc----Ccceeeeeecccc-----ccccccceeeecC--Cc-eEEEe
Confidence 78777653 37899888 7777776310 0001122111000 0122345555554 57 59999
Q ss_pred ECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEE
Q 001538 147 YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 226 (1057)
Q Consensus 147 ~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~l 226 (1057)
+.+|.|+|||-...+...-+.+ -..+|+.+..+ .||.+|+... +..|.+
T Consensus 448 S~~GdIRLYdri~~~AKTAlPg-----------------------------LG~~I~hVdvt-adGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 448 SLKGDIRLYDRIGRRAKTALPG-----------------------------LGDAIKHVDVT-ADGKWILATC-KTYLLL 496 (644)
T ss_pred ecCCcEEeehhhhhhhhhcccc-----------------------------cCCceeeEEee-ccCcEEEEec-ccEEEE
Confidence 9999999999733333333332 04678899988 8999988765 567777
Q ss_pred EeCC
Q 001538 227 WNTS 230 (1057)
Q Consensus 227 Wd~~ 230 (1057)
-++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 7764
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.48 E-value=0.53 Score=58.66 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=95.1
Q ss_pred eEEEEEcCCcEEEEE-eCCCcEEEEECCCCceeeeecCCCCEEEEEEecCC-------cEEEEEccCCcEEEEEEeCC--
Q 001538 30 KNLEFLQNQGFLISI-TNDNEIQVWSLESRSLACCLKWESNITAFSVISGS-------HFMYIGDENGLMSVIKYDAD-- 99 (1057)
Q Consensus 30 ~~L~F~~~~~~Lvs~-s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~-------~~l~vG~~~G~v~v~~~d~~-- 99 (1057)
+.|-.-.+...|+.- ...+.|.-.||..|+++.....+..+.-..+.|+. .--++|..+. .++.+|+.
T Consensus 485 k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n--~lfriDpR~~ 562 (794)
T PF08553_consen 485 KAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDN--SLFRIDPRLS 562 (794)
T ss_pred hhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCC--ceEEeccCCC
Confidence 334333344433332 34688999999999999988766544444444543 3458898888 56666653
Q ss_pred CCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccC
Q 001538 100 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 179 (1057)
Q Consensus 100 ~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (1057)
..+++ +.+. +.+ .......|++-.. +| +||+|+.+|.|+|||--..+....+.+
T Consensus 563 ~~k~v-------~~~~-k~Y----~~~~~Fs~~aTt~--~G-~iavgs~~G~IRLyd~~g~~AKT~lp~----------- 616 (794)
T PF08553_consen 563 GNKLV-------DSQS-KQY----SSKNNFSCFATTE--DG-YIAVGSNKGDIRLYDRLGKRAKTALPG----------- 616 (794)
T ss_pred CCcee-------eccc-ccc----ccCCCceEEEecC--Cc-eEEEEeCCCcEEeecccchhhhhcCCC-----------
Confidence 22222 1110 000 1234567777776 57 599999999999999322222222221
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeC
Q 001538 180 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 229 (1057)
Q Consensus 180 ~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~ 229 (1057)
-..+|+.++.+ .||++|+... +.-|.+++.
T Consensus 617 ------------------lG~pI~~iDvt-~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 617 ------------------LGDPIIGIDVT-ADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ------------------CCCCeeEEEec-CCCcEEEEee-cceEEEEEE
Confidence 04689999999 9999988776 457777776
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.46 E-value=0.78 Score=52.04 Aligned_cols=174 Identities=16% Similarity=0.212 Sum_probs=106.1
Q ss_pred CcEEEEcCCCeEEEE--EcCCCCCeeEEEEEc---C----CcEEEEEeC---------C-CcEEEEECCCC-----c--e
Q 001538 7 GRIKVIGGDGIEGLL--ISPSQLPYKNLEFLQ---N----QGFLISITN---------D-NEIQVWSLESR-----S--L 60 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~--~~~~~~~v~~L~F~~---~----~~~Lvs~s~---------d-~~I~VWdl~s~-----~--~ 60 (1057)
..|+++...+.+.+. ..+....+.+|+... + ..+|+.++. . |.|.|+++... + +
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468899887665443 344444555554443 2 457776653 2 88999999884 3 3
Q ss_pred eeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCC
Q 001538 61 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 140 (1057)
Q Consensus 61 l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g 140 (1057)
++....++.|++++.- ..+++++. ++.|.++.++... ++....+. . ....|++|... +
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~-~l~~~~~~-~-------------~~~~i~sl~~~----~ 139 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSK-TLLKKAFY-D-------------SPFYITSLSVF----K 139 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTS-SEEEEEEE---------------BSSSEEEEEEE----T
T ss_pred EEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcc-cchhhhee-c-------------ceEEEEEEecc----c
Confidence 4555678999999876 44455544 5767888887654 23310000 0 12257777765 3
Q ss_pred CeEEEEECCCEEEEEEccC-Ce-EEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEE
Q 001538 141 NRVLIAYENALVILWDVSE-AQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 218 (1057)
Q Consensus 141 ~~lli~~~dG~I~lWdl~~-~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg 218 (1057)
+++++|.....+.++.+.+ ++ +..... +. ....+++++|- +|+..++++
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~--d~--------------------------~~~~v~~~~~l-~d~~~~i~~ 190 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVAR--DY--------------------------QPRWVTAAEFL-VDEDTIIVG 190 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEE--ES--------------------------S-BEEEEEEEE--SSSEEEEE
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEe--cC--------------------------CCccEEEEEEe-cCCcEEEEE
Confidence 4788888776666665443 22 332211 11 14568999998 777899999
Q ss_pred EcCCcEEEEeCCC
Q 001538 219 YIDGDILLWNTST 231 (1057)
Q Consensus 219 ~~DG~I~lWd~~~ 231 (1057)
..+|.|.++..+.
T Consensus 191 D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 191 DKDGNLFVLRYNP 203 (321)
T ss_dssp ETTSEEEEEEE-S
T ss_pred cCCCeEEEEEECC
Confidence 9999999998853
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.28 E-value=6.6 Score=44.15 Aligned_cols=137 Identities=12% Similarity=0.161 Sum_probs=88.6
Q ss_pred CcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEe----------CCCcEEEEECCCCceeeeecCCC--C-----
Q 001538 7 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT----------NDNEIQVWSLESRSLACCLKWES--N----- 69 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s----------~d~~I~VWdl~s~~~l~tl~~~~--~----- 69 (1057)
++|.|++.+....+-..+.. -.-.+..+|+++.+.+++ ...-|++||..+-.+...+..+. +
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred ceEEEEECCCCcEEEEeecc-cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 68999998876666555432 234566789888777644 34579999999988877664332 1
Q ss_pred -EEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC
Q 001538 70 -ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE 148 (1057)
Q Consensus 70 -Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~ 148 (1057)
...+.++.+++|+|+--..=.-+|=.+|...+++. -.|+. ...+.|=+.+ ...+...|+
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv---~ei~~--------------PGC~~iyP~~---~~~F~~lC~ 155 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVV---GEIDT--------------PGCWLIYPSG---NRGFSMLCG 155 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEE---EEEEG--------------TSEEEEEEEE---TTEEEEEET
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCcee---eeecC--------------CCEEEEEecC---CCceEEEec
Confidence 12467888999998866555445666677666665 12221 1244444444 235899999
Q ss_pred CCEEEEEEcc-CCeEEE
Q 001538 149 NALVILWDVS-EAQIIF 164 (1057)
Q Consensus 149 dG~I~lWdl~-~~~~~~ 164 (1057)
||.+.-..+. .|+..+
T Consensus 156 DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 156 DGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp TSCEEEEEETSTSSEEE
T ss_pred CCceEEEEECCCCCEeE
Confidence 9999888887 666653
No 351
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=0.07 Score=66.00 Aligned_cols=114 Identities=24% Similarity=0.316 Sum_probs=77.3
Q ss_pred CEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC
Q 001538 69 NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE 148 (1057)
Q Consensus 69 ~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~ 148 (1057)
.++.++....+-++++|++.| .|+..|.. +.|. |+ . | ++ ...+||++++|+- +|++++.|+.
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~g--hvl~~d~~-~nL~--~~--~--~-ne------~v~~~Vtsvafn~--dg~~l~~G~~ 150 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHG--HVLLSDMT-GNLG--PL--H--Q-NE------RVQGPVTSVAFNQ--DGSLLLAGLG 150 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCch--hhhhhhhh-cccc--hh--h--c-CC------ccCCcceeeEecC--CCceeccccC
Confidence 444555555677899999999 55554432 1222 11 1 1 11 2357999999998 7999999999
Q ss_pred CCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEe
Q 001538 149 NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 228 (1057)
Q Consensus 149 dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd 228 (1057)
+|.|.+||+..+++.+.+.-. . + ....|..+-|. .+++.+.++..-|+ ||.
T Consensus 151 ~G~V~v~D~~~~k~l~~i~e~------~-a-------------------p~t~vi~v~~t-~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 151 DGHVTVWDMHRAKILKVITEH------G-A-------------------PVTGVIFVGRT-SQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CCcEEEEEccCCcceeeeeec------C-C-------------------ccceEEEEEEe-CCCcEEEEccCCCc--eEE
Confidence 999999999999888765430 0 0 03345555566 46667999988887 776
Q ss_pred C
Q 001538 229 T 229 (1057)
Q Consensus 229 ~ 229 (1057)
+
T Consensus 202 l 202 (1206)
T KOG2079|consen 202 L 202 (1206)
T ss_pred E
Confidence 5
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.22 E-value=0.051 Score=38.38 Aligned_cols=29 Identities=28% Similarity=0.595 Sum_probs=26.9
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEe
Q 001538 199 EKEISALCWASSSGSILAVGYIDGDILLWN 228 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~DG~I~lWd 228 (1057)
...|.+++|+ +++..+++++.||.+++|+
T Consensus 12 ~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFS-PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence 5689999999 8999999999999999996
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.22 E-value=0.047 Score=56.67 Aligned_cols=109 Identities=11% Similarity=0.182 Sum_probs=70.5
Q ss_pred EEEEeCCCcEEEEECCCCceeeeecCCCCEEE-EEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhc
Q 001538 41 LISITNDNEIQVWSLESRSLACCLKWESNITA-FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 119 (1057)
Q Consensus 41 Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita-~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~ 119 (1057)
|...++|+.|.=++++..++...- +.-|-+ +.+...+.-+++|+.+|.|.+|++..... +. -++
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rs--e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~-~~---d~~--------- 97 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRS--ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGA-HS---DRV--------- 97 (238)
T ss_pred hccccCCcccccchhhhhhhhhhh--hhhhhcceeecccCceEEeecccceEEEecCCccch-HH---Hhh---------
Confidence 556678899988888765542211 111111 34444567889999999999999874321 11 000
Q ss_pred CCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecC
Q 001538 120 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 168 (1057)
Q Consensus 120 g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~ 168 (1057)
.....+|.++-+.-+ ++....++..+|.|+.|++.-++.+...++
T Consensus 98 ---~s~~e~i~~~Ip~~~-~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 98 ---CSGEESIDLGIPNGR-DSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred ---hcccccceecccccc-ccceeEEeccCCceeeeccccCceeeeecc
Confidence 011234666666655 466789999999999999998888776665
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.20 E-value=0.58 Score=55.00 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=98.7
Q ss_pred cCCCCCeeEEEEEcCCcEEEEEe--CC--CcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE-EEccCCcEEEEEEe
Q 001538 23 SPSQLPYKNLEFLQNQGFLISIT--ND--NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYD 97 (1057)
Q Consensus 23 ~~~~~~v~~L~F~~~~~~Lvs~s--~d--~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~-vG~~~G~v~v~~~d 97 (1057)
......+..=+|++++..|+-.+ .. ..+.++|+.+++....+.+.+.-..-.|+|++++++ +...+|+..||.+|
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 33444566666777775544332 22 368999999988766666777777888999998764 56678999999999
Q ss_pred CCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC-CC--EEEEEEccCCeEEEEecCCccccc
Q 001538 98 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEAQIIFVGGGKDLQLK 174 (1057)
Q Consensus 98 ~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~-dG--~I~lWdl~~~~~~~~~~~~~~~~~ 174 (1057)
...+.+.+ +.+. .+.-..=.|+| +|+.++-+++ .| .|.++|+..+...+....
T Consensus 269 l~~~~~~~----Lt~~------------~gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~------ 324 (425)
T COG0823 269 LDGKNLPR----LTNG------------FGINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS------ 324 (425)
T ss_pred CCCCccee----cccC------------CccccCccCCC--CCCEEEEEeCCCCCcceEEECCCCCceeEeecc------
Confidence 87665431 1110 01112447899 6777665544 44 567777776655333221
Q ss_pred CCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEc-CCc--EEEEeCCC
Q 001538 175 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGD--ILLWNTST 231 (1057)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~-DG~--I~lWd~~~ 231 (1057)
...=..-.|+ |||++|+..+. +|. |.+.|+.+
T Consensus 325 ------------------------~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 325 ------------------------GGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred ------------------------CCCCcCccCC-CCCCEEEEEeccCCceeeEEeccCC
Confidence 0011155688 99998877664 355 44444433
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.17 E-value=0.25 Score=59.45 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=83.1
Q ss_pred EEEEEEecCCCeEEEEec----CccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC
Q 001538 489 VSTLSFCFINSSLAVGNE----FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS 564 (1057)
Q Consensus 489 V~~v~fspd~~~Lavg~~----dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~ 564 (1057)
-+-.+|+|.-..+|+++- .|.|.||-=...+.. + ..+.. .+++|+|.|.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr--------------~----------Vt~P~---hatSLCWHpe 70 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQR--------------D----------VTYPV---HATSLCWHPE 70 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCCCCc--------------c----------cccce---ehhhhccChH
Confidence 344578998889988865 378888853332211 0 11222 3577999999
Q ss_pred CCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeE
Q 001538 565 GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKI 644 (1057)
Q Consensus 565 g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i 644 (1057)
--.||+|-.-|.+.||...+.+..-... .|+.+|+-|.|+ ++|..|+++.+-|.|
T Consensus 71 ~~vLa~gwe~g~~~v~~~~~~e~htv~~---th~a~i~~l~wS----------------------~~G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 71 EFVLAQGWEMGVSDVQKTNTTETHTVVE---THPAPIQGLDWS----------------------HDGTVLMTLDNPGSV 125 (1416)
T ss_pred HHHHhhccccceeEEEecCCceeeeecc---CCCCCceeEEec----------------------CCCCeEEEcCCCcee
Confidence 8889999999999999987655432222 499999999999 899999999999999
Q ss_pred EEEeCCC
Q 001538 645 SIVGGSS 651 (1057)
Q Consensus 645 ~v~d~~t 651 (1057)
..|...-
T Consensus 126 ~lwr~d~ 132 (1416)
T KOG3617|consen 126 HLWRYDV 132 (1416)
T ss_pred EEEEeee
Confidence 9998763
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.95 E-value=0.51 Score=52.12 Aligned_cols=143 Identities=13% Similarity=0.161 Sum_probs=89.1
Q ss_pred CccccCCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceee---------------eec
Q 001538 1 MCLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC---------------CLK 65 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~---------------tl~ 65 (1057)
+|||.+| +.+|...+...........+|..|...+..+.|++.+ |+.+.++++..-.... .+.
T Consensus 11 ~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 88 (275)
T PF00780_consen 11 LVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLP 88 (275)
T ss_pred EEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccccccc
Confidence 4798888 8888662211122222334599999999998888875 5999999987755433 111
Q ss_pred CCCCEEEEE---EecCCcEEEEEccCCcEEEEEEeCCCCce--eccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCC
Q 001538 66 WESNITAFS---VISGSHFMYIGDENGLMSVIKYDADEGKL--FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 140 (1057)
Q Consensus 66 ~~~~Ita~~---~sp~~~~l~vG~~~G~v~v~~~d~~~~~l--~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g 140 (1057)
....+..++ ......+|+++... +|.++.|....... ...++.+ +..+.+|+|.+
T Consensus 89 ~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~l---------------p~~~~~i~~~~---- 148 (275)
T PF00780_consen 89 ETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISL---------------PDPPSSIAFLG---- 148 (275)
T ss_pred ccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEc---------------CCCcEEEEEeC----
Confidence 223455555 22234455555554 78888887643221 1011222 25789999985
Q ss_pred CeEEEEECCCEEEEEEccCCeEEEEe
Q 001538 141 NRVLIAYENALVILWDVSEAQIIFVG 166 (1057)
Q Consensus 141 ~~lli~~~dG~I~lWdl~~~~~~~~~ 166 (1057)
+.+++++.++-. +.|+.++.....+
T Consensus 149 ~~i~v~~~~~f~-~idl~~~~~~~l~ 173 (275)
T PF00780_consen 149 NKICVGTSKGFY-LIDLNTGSPSELL 173 (275)
T ss_pred CEEEEEeCCceE-EEecCCCCceEEe
Confidence 358888877755 9999988765544
No 357
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.52 E-value=1.7 Score=47.54 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCeEEEEEcCC--CCCeeEEEEEcCCcEEEEEe-CCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEE
Q 001538 6 DGRIKVIGGDGIEGLLISPS--QLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 82 (1057)
Q Consensus 6 dG~I~v~g~~~~e~~~~~~~--~~~v~~L~F~~~~~~Lvs~s-~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l 82 (1057)
||++.-....+.+-+--... ...+...+.++++..++.+. .++.-.||-...+.....+.....++.-+|++++...
T Consensus 1 dG~l~~~~~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W 80 (253)
T PF10647_consen 1 DGQLVRVSGGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVW 80 (253)
T ss_pred CCcEEEecCCceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEE
Confidence 45555554454443321111 23688899999998777776 2333334443444433333344578888999996666
Q ss_pred EEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC---CCEEEEEEc
Q 001538 83 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDV 157 (1057)
Q Consensus 83 ~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~---dG~I~lWdl 157 (1057)
++...+...+++. +...+... +..+.+... ...|.++.++| ||+|++...+ ++.|.+=-+
T Consensus 81 ~v~~~~~~~~~~~-~~~~g~~~--~~~v~~~~~----------~~~I~~l~vSp--DG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 81 TVDDGSGGVRVVR-DSASGTGE--PVEVDWPGL----------RGRITALRVSP--DGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred EEEcCCCceEEEE-ecCCCcce--eEEeccccc----------CCceEEEEECC--CCcEEEEEEecCCCCeEEEEEE
Confidence 6666565445543 22223322 233332210 11899999999 7999998873 356655544
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=5.5 Score=46.38 Aligned_cols=183 Identities=14% Similarity=0.143 Sum_probs=116.2
Q ss_pred CCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeC---CCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEE
Q 001538 6 DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 82 (1057)
Q Consensus 6 dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~---d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l 82 (1057)
++.|.|++...-.++...+...--..+.|.++++++..+.. ++++.+.|-.++++..+......-+.++++|++..+
T Consensus 95 ~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~v 174 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKV 174 (381)
T ss_pred CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeE
Confidence 46777777444333333333335568999999988887776 689999999999988886533222889999999999
Q ss_pred EEEc-cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC---CEEEEEEcc
Q 001538 83 YIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN---ALVILWDVS 158 (1057)
Q Consensus 83 ~vG~-~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d---G~I~lWdl~ 158 (1057)
|+.. .++. |..+|.....+.. +... ........-..+.+.| +|+++.+.... +.+...|..
T Consensus 175 yv~~~~~~~--v~vi~~~~~~v~~-~~~~----------~~~~~~~~P~~i~v~~--~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 175 YVTNSDDNT--VSVIDTSGNSVVR-GSVG----------SLVGVGTGPAGIAVDP--DGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred EEEecCCCe--EEEEeCCCcceec-cccc----------cccccCCCCceEEECC--CCCEEEEEeccCCCceEEEEeCC
Confidence 9888 4564 4444444333321 1100 0011123346788888 67766665554 488899998
Q ss_pred CCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC-CcEEEEeCCCC
Q 001538 159 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNTSTT 232 (1057)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D-G~I~lWd~~~~ 232 (1057)
++.+...-.. .. .. ....+..+ |+|..+.+.... +.+.+-|..+.
T Consensus 240 ~~~v~~~~~~-------------~~--------------~~-~~~~v~~~-p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 240 TGNVTATDLP-------------VG--------------SG-APRGVAVD-PAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CceEEEeccc-------------cc--------------cC-CCCceeEC-CCCCEEEEEecCCCeEEEEeCCCC
Confidence 8887654111 00 01 23456677 999998888665 67777776553
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.44 E-value=1.1 Score=55.11 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=94.4
Q ss_pred CCcEEEEcCCCeEEEEEcC-CCCCeeEEEEEcCCcEEEEEe------CCC--cEEEEECCCCceeeeecCCCCEEEEEEe
Q 001538 6 DGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISIT------NDN--EIQVWSLESRSLACCLKWESNITAFSVI 76 (1057)
Q Consensus 6 dG~I~v~g~~~~e~~~~~~-~~~~v~~L~F~~~~~~Lvs~s------~d~--~I~VWdl~s~~~l~tl~~~~~Ita~~~s 76 (1057)
+|++.-....+++-+--.. ....+...++++++..++.+. .|. .|.+++.. +.. ..+......+.-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceEC
Confidence 5555555444433221110 112477889999998877665 244 44444542 222 222223348899999
Q ss_pred cCCcEEEEEccCCcEEEEEEeC-CCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEE
Q 001538 77 SGSHFMYIGDENGLMSVIKYDA-DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 155 (1057)
Q Consensus 77 p~~~~l~vG~~~G~v~v~~~d~-~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lW 155 (1057)
|+++++++......+ ++..+. ..+++ |.++-+. .+. .......|.++.|+| ||++++... +|.|.+=
T Consensus 406 pDG~~lw~v~dg~~~-~~v~~~~~~gql----~~~~vd~-ge~---~~~~~g~Issl~wSp--DG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 406 LDADAVWVVVDGNTV-VRVIRDPATGQL----ARTPVDA-SAV---ASRVPGPISELQLSR--DGVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCCceEEEecCcce-EEEeccCCCceE----EEEeccC-chh---hhccCCCcCeEEECC--CCCEEEEEE-CCEEEEE
Confidence 999988776543221 111111 12222 2111100 000 001245799999999 799988876 3665442
Q ss_pred ---EccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 156 ---DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 156 ---dl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
.-..|. ..+.. +..... .....+.++.|. .++. |+++..++.-.+|.++
T Consensus 474 ~Vvr~~~G~--~~l~~-------------~~~l~~---------~l~~~~~~l~W~-~~~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 474 VVEQTEDGQ--YALTN-------------PREVGP---------GLGDTAVSLDWR-TGDS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred EEEeCCCCc--eeecc-------------cEEeec---------ccCCccccceEe-cCCE-EEEEecCCCCceEEEe
Confidence 222332 11111 000000 002345789999 7777 5577776666677653
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.42 E-value=3 Score=44.26 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=74.9
Q ss_pred EecCCC-eEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEe
Q 001538 494 FCFINS-SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 572 (1057)
Q Consensus 494 fspd~~-~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~ 572 (1057)
.++|.+ ++..|+..+.+.--|+......-+ .. ....|.+-++- -|.+++.|.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We------------------------~i--lg~RiE~sa~v-vgdfVV~GC 70 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE------------------------AI--LGVRIECSAIV-VGDFVVLGC 70 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEee------------------------hh--hCceeeeeeEE-ECCEEEEEE
Confidence 445554 566788888887777655432100 00 12223332222 467899999
Q ss_pred CCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCc
Q 001538 573 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 652 (1057)
Q Consensus 573 ~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg 652 (1057)
.+|.+.+.+..+++..+++.... .|.+-+- .++++.++++|+.|++....|..+.
T Consensus 71 y~g~lYfl~~~tGs~~w~f~~~~----~vk~~a~---------------------~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 71 YSGGLYFLCVKTGSQIWNFVILE----TVKVRAQ---------------------CDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred ccCcEEEEEecchhheeeeeehh----hhccceE---------------------EcCCCceEEEecCCCcEEEeccccc
Confidence 99999999999999988876532 2222111 1377999999999999999999887
Q ss_pred ceeecC
Q 001538 653 NMISSS 658 (1057)
Q Consensus 653 ~~i~~~ 658 (1057)
.++-..
T Consensus 126 ~cVyks 131 (354)
T KOG4649|consen 126 GCVYKS 131 (354)
T ss_pred ceEEec
Confidence 766543
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.38 E-value=0.43 Score=56.02 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=75.5
Q ss_pred CCeeEEEEEcCCcEEEEEe-CCC--cEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEE-EccCCcEEEEEEeCCCCc
Q 001538 27 LPYKNLEFLQNQGFLISIT-NDN--EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI-GDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s-~d~--~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~v-G~~~G~v~v~~~d~~~~~ 102 (1057)
..-..-+|+||+.+|+-+. .|+ .|.+.|+.++....-....+.-+.=.++|+|++++. .+..|.-.||.++.+...
T Consensus 238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 3345677999998777555 444 466778888774331223444456788999998755 556788899999887654
Q ss_pred eeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC-CE--EEEEEccCCeEEEEe
Q 001538 103 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-AL--VILWDVSEAQIIFVG 166 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d-G~--I~lWdl~~~~~~~~~ 166 (1057)
.. ++...- ... ..-.|+| +|++++..... |. |.+.|+.++.-.+.+
T Consensus 318 ~~----riT~~~-----------~~~-~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 318 VT----RLTFSG-----------GGN-SNPVWSP--DGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred ee----EeeccC-----------CCC-cCccCCC--CCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 43 111100 001 1456888 78887776643 44 667777766534333
No 362
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.29 E-value=0.095 Score=40.89 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=29.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEeCC
Q 001538 552 VNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 583 (1057)
Q Consensus 552 h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~ 583 (1057)
...+|++++|||...+||+|+.+|.|.|+.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35679999999999999999999999999983
No 363
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.19 E-value=0.049 Score=65.54 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=86.2
Q ss_pred CCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcC
Q 001538 484 GSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS 563 (1057)
Q Consensus 484 ~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~ 563 (1057)
.|+..-+|++|+.+.+.|++|+..|.|++|+...+... .....|.++||-|.=|-
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-------------------------~s~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-------------------------ESVNCHQSAVTLVEPSV 1153 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-------------------------ccccccccccccccccC
Confidence 56678999999999999999999999999998766443 13457999999999999
Q ss_pred CCCEEEEEeCCc--eEEEEeCCC-CeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEec
Q 001538 564 SGAKLAVGFECG--RVAVLDMNL-LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK 640 (1057)
Q Consensus 564 ~g~~lA~G~~dG--~V~vwDi~~-~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~ 640 (1057)
||..+.+.+... ...+|++.. +...+++. .=.++.|+.. ...=+.|+.
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~-------ed~~vkFsn~----------------------~q~r~~gt~ 1204 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTGGPRHSFD-------EDKAVKFSNS----------------------LQFRALGTE 1204 (1516)
T ss_pred CcceeeeeccccCchHHHhccccccCcccccc-------ccceeehhhh----------------------HHHHHhccc
Confidence 998765544333 478999853 22233221 1235666621 223456777
Q ss_pred CCeEEEEeCCCcceeec
Q 001538 641 DAKISIVGGSSENMISS 657 (1057)
Q Consensus 641 dg~i~v~d~~tg~~i~~ 657 (1057)
.-...+||.+|+..+..
T Consensus 1205 ~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1205 ADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred ccceEEEecccCcHHHH
Confidence 77789999999987755
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.16 E-value=7.7 Score=45.62 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=37.4
Q ss_pred cEEEEcCCCeEE-EEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCc
Q 001538 8 RIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 59 (1057)
Q Consensus 8 ~I~v~g~~~~e~-~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~ 59 (1057)
.|+||...|... .+..+. ..+..|.|..+. .|+.+..||.++++|+....
T Consensus 62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce
Confidence 588887665432 233444 789999999876 78899999999999987444
No 365
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.09 E-value=2 Score=44.89 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEE
Q 001538 139 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 217 (1057)
Q Consensus 139 ~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~lat 217 (1057)
+|++.++.+..|+|.-.|..+|+++..+.- + .+.|+|.||-.+|=..+++
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---------P--------------------t~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKL---------P--------------------TPQITSCCFGGKNLDILYV 271 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEc---------C--------------------CCceEEEEecCCCccEEEE
Confidence 688777778889999999999999987765 3 7899999998565444433
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.90 E-value=0.49 Score=55.83 Aligned_cols=140 Identities=14% Similarity=0.225 Sum_probs=75.5
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEE-EEeCCCCceec
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVI-KYDADEGKLFQ 105 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~-~~d~~~~~l~~ 105 (1057)
.....|.++|++++++. ..||.-.|+.....+-.. .+.-..+.|.++++| ++-..+.+|.++ +++....+.
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~----~G~g~~~vw~~~n~y-Av~~~~~~I~I~kn~~~~~~k~-- 104 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA----FGSGLSFVWSSRNRY-AVLESSSTIKIYKNFKNEVVKS-- 104 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE----EEE-SEEEE-TSSEE-EEE-TTS-EEEEETTEE-TT----
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc----cCceeEEEEecCccE-EEEECCCeEEEEEcCccccceE--
Confidence 45789999999976665 677887788733222211 133345777775554 444457766664 222111000
Q ss_pred cCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCC
Q 001538 106 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 185 (1057)
Q Consensus 106 ~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 185 (1057)
+.+ ...+..|-. |. ||....++.|.+||+.++++++.+..
T Consensus 105 --i~~---------------~~~~~~If~-----G~-LL~~~~~~~i~~yDw~~~~~i~~i~v----------------- 144 (443)
T PF04053_consen 105 --IKL---------------PFSVEKIFG-----GN-LLGVKSSDFICFYDWETGKLIRRIDV----------------- 144 (443)
T ss_dssp --------------------SS-EEEEE------SS-SEEEEETTEEEEE-TTT--EEEEESS-----------------
T ss_pred --EcC---------------CcccceEEc-----Cc-EEEEECCCCEEEEEhhHcceeeEEec-----------------
Confidence 111 112344433 55 55555666888999999999988764
Q ss_pred CCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 186 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 186 ~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
.+|..+.|+ ++|.+++-.+.| ++.+++..
T Consensus 145 --------------~~vk~V~Ws-~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 145 --------------SAVKYVIWS-DDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp ---------------E-EEEEE--TTSSEEEEE-S--SEEEEEE-
T ss_pred --------------CCCcEEEEE-CCCCEEEEEeCC-eEEEEEec
Confidence 348999999 999999988755 77887654
No 367
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=93.87 E-value=0.71 Score=42.56 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=33.5
Q ss_pred eeeecCCCcccEEEEeecCCCC-CCCCceEEEEEcCCCeeEEee
Q 001538 312 RVDITLTGSFADMILLSSAGAT-VGNHKADLFVLTSPGQLHFYD 354 (1057)
Q Consensus 312 ~~~l~~~~~~~d~~~~p~~~~~-g~~~~~~lv~l~~~G~l~~~D 354 (1057)
...+....+++||..+....+. ..++|.+++++++. +|+++|
T Consensus 56 ~~~ldf~s~VIDF~~i~~~~~~~e~~~P~alvVL~e~-eLVvID 98 (105)
T PF08366_consen 56 HVVLDFTSRVIDFFTICESPWPNEFQDPYALVVLLEE-ELVVID 98 (105)
T ss_pred EEEEEcCCceEEEEEEcCCCCccccCCCcEEEEEEcC-cEEEEE
Confidence 3445566779999999887663 56889999999987 888888
No 368
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.57 E-value=0.16 Score=39.64 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=28.6
Q ss_pred CCEEEEEEecCCCeEEEEecCccEEEEEecC
Q 001538 487 APVSTLSFCFINSSLAVGNEFGLVYIYNLNG 517 (1057)
Q Consensus 487 ~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~ 517 (1057)
..|++++|||....||+|+.+|.|.||++..
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 4799999999999999999999999999844
No 369
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.52 E-value=19 Score=42.14 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=84.4
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEec-----CCCeEEEEecCccEEEEEec
Q 001538 442 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-----INSSLAVGNEFGLVYIYNLN 516 (1057)
Q Consensus 442 ~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fsp-----d~~~Lavg~~dG~V~l~~~~ 516 (1057)
......|+.|+..|.+||++........- .-+.+.++. .||-.|..-. +...||+ -.-..+.||.+.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~----~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~ 105 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE----DLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS 105 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCc----cEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence 34566899999999999999866552211 011122232 3666665432 2335555 555678888884
Q ss_pred CCCCccceeeeecCCCceEEeccCCcceeeEEEeeC--CCCeEEEEEcCC-----CCEEEEEeCCceEEEEeCCCCeEEE
Q 001538 517 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV--NSPVRALQFTSS-----GAKLAVGFECGRVAVLDMNLLSVLF 589 (1057)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h--~~~ItsLa~S~~-----g~~lA~G~~dG~V~vwDi~~~~~l~ 589 (1057)
........ +.-+.+ ...-.| ......++.-|- -.++.+=+.||.+.+++-++-.-.+
T Consensus 106 ~~~g~~~~-------g~~~~L---------~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~ 169 (418)
T PF14727_consen 106 LVDGTVEH-------GNQYQL---------ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR 169 (418)
T ss_pred ecCCCccc-------CcEEEE---------EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE
Confidence 33221000 000110 011112 122223333222 2478999999999999976543222
Q ss_pred EeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 590 FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 590 ~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
.+.. .-.++| +.|. +..+.+++++.+..|.-|.
T Consensus 170 ~lp~-~llPgP---l~Y~----------------------~~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 170 FLPD-FLLPGP---LCYC----------------------PRTDSFVTASSSWTLECYK 202 (418)
T ss_pred EcCC-CCCCcC---eEEe----------------------ecCCEEEEecCceeEEEec
Confidence 2211 013444 4455 3456688888888888885
No 370
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=1 Score=56.51 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=96.9
Q ss_pred CccccCCcEEEEcCCCeEE------------------EEEcCCCCCeeEEEEEcCCcEEEEEeCCC--cEEEEECCCCce
Q 001538 1 MCLCRDGRIKVIGGDGIEG------------------LLISPSQLPYKNLEFLQNQGFLISITNDN--EIQVWSLESRSL 60 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e~------------------~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~--~I~VWdl~s~~~ 60 (1057)
|++...+.+.|||..+.-. .+..+...++..+.-.+|...+++....| .|.++|+++-..
T Consensus 57 Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~ 136 (1405)
T KOG3630|consen 57 FAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSE 136 (1405)
T ss_pred EEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhh
Confidence 3455667788887654221 12233445666666667766666555555 788888875332
Q ss_pred --------eeeec--CC--CCEEEEEEecCCcE-EEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCC
Q 001538 61 --------ACCLK--WE--SNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 127 (1057)
Q Consensus 61 --------l~tl~--~~--~~Ita~~~sp~~~~-l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~ 127 (1057)
++... .+ .-.-++.|-|.-.. .++...|+.|+|..+... .+.+.. -.-..
T Consensus 137 s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~-------~~~v~s----------~p~t~ 199 (1405)
T KOG3630|consen 137 SRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL-------AQNVTS----------FPVTN 199 (1405)
T ss_pred hhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh-------hhhhcc----------cCccc
Confidence 11111 11 23345555554322 344556665555543221 011110 01134
Q ss_pred CeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEE
Q 001538 128 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 207 (1057)
Q Consensus 128 ~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~w 207 (1057)
.+++|+|+|+ |++++||..+|++.-|-.. .+++..... |+. .+...|.++||
T Consensus 200 ~~Tav~WSpr--GKQl~iG~nnGt~vQy~P~-leik~~ip~------------Pp~-------------~e~yrvl~v~W 251 (1405)
T KOG3630|consen 200 SQTAVLWSPR--GKQLFIGRNNGTEVQYEPS-LEIKSEIPE------------PPV-------------EENYRVLSVTW 251 (1405)
T ss_pred ceeeEEeccc--cceeeEecCCCeEEEeecc-cceeecccC------------CCc-------------CCCcceeEEEE
Confidence 6899999995 9999999999999877653 333333222 121 12578999999
Q ss_pred ecCCCCEEEEEEcCCc
Q 001538 208 ASSSGSILAVGYIDGD 223 (1057)
Q Consensus 208 s~pdG~~latg~~DG~ 223 (1057)
- .. .-+++.|..++
T Consensus 252 l-~t-~eflvvy~n~t 265 (1405)
T KOG3630|consen 252 L-ST-QEFLVVYGNVT 265 (1405)
T ss_pred e-cc-eeEEEEecccc
Confidence 8 33 33555555444
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=5.1 Score=46.66 Aligned_cols=158 Identities=18% Similarity=0.256 Sum_probs=105.3
Q ss_pred EEEEEcCCcEEEE-EeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccC-CcEEEEEEeCCCCceeccCc
Q 001538 31 NLEFLQNQGFLIS-ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQLPY 108 (1057)
Q Consensus 31 ~L~F~~~~~~Lvs-~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~-G~v~v~~~d~~~~~l~~~~~ 108 (1057)
.+.+.+.+..+.. ...++.|.|.|..+.+.+++......-..+++++++..+|++... ++-.++.+|...+++.. .
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~--~ 155 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA--T 155 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE--E
Confidence 5566666664444 445699999999999988888755567789999999999999885 34478888887776651 1
Q ss_pred ccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE-CCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCC
Q 001538 109 NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDST 187 (1057)
Q Consensus 109 ~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~-~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 187 (1057)
++. | ..| ..+++.| +|+.+.+.. .++.|.+.|.....+.+ -... .. .
T Consensus 156 -~~v-------G-----~~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~--~~---------~---- 203 (381)
T COG3391 156 -IPV-------G-----NTP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG--SL---------V---- 203 (381)
T ss_pred -Eec-------C-----CCc-ceEEECC--CCCeEEEEecCCCeEEEEeCCCcceec-cccc--cc---------c----
Confidence 221 1 124 8899999 688666665 67899999987776664 1110 00 0
Q ss_pred cccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC---CcEEEEeCCCC
Q 001538 188 FLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTSTT 232 (1057)
Q Consensus 188 ~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D---G~I~lWd~~~~ 232 (1057)
.....-..+.+. |+|..+.+.-.. +.+..-|..++
T Consensus 204 ---------~~~~~P~~i~v~-~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 204 ---------GVGTGPAGIAVD-PDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred ---------ccCCCCceEEEC-CCCCEEEEEeccCCCceEEEEeCCCc
Confidence 002223466778 999865554333 57777777664
No 372
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.69 E-value=29 Score=43.64 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=56.0
Q ss_pred CEEEEEEecCCcEEEEEccCCcEEEEEEeCC---CCceeccCcccch--hhhhhhcCCCCCCCCCeEEEEeCcCC-CCCe
Q 001538 69 NITAFSVISGSHFMYIGDENGLMSVIKYDAD---EGKLFQLPYNISA--DALSEKAGFPLLSHQPVVGVLPHPNS-SGNR 142 (1057)
Q Consensus 69 ~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~---~~~l~~~~~~i~~--~~~~~~~g~~~~~~~~V~sI~~sP~d-~g~~ 142 (1057)
.|..+.++|+|.++++.+..| |.|+.+... .+.+...+-.|.. ...+... +.......|..+.|||.. .+.+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-FTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhh-ccCCCCceEEEEEEcCCCCCCCe
Confidence 578899999999999988877 566665321 1111000001100 0000110 122345689999999952 3578
Q ss_pred EEEEECCCEEEEEEccCC
Q 001538 143 VLIAYENALVILWDVSEA 160 (1057)
Q Consensus 143 lli~~~dG~I~lWdl~~~ 160 (1057)
|++-..|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
No 373
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.67 E-value=0.11 Score=62.65 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=53.8
Q ss_pred ceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEe
Q 001538 543 SLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 543 ~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~ 607 (1057)
|.+...|+.|+...||++||-+.++|++|+..|.|+++++.+|......++ |.++||-++=+
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc---H~SavT~vePs 1152 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC---HQSAVTLVEPS 1152 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc---ccccccccccc
Confidence 445567778999999999999999999999999999999999988777666 99999988754
No 374
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.65 E-value=4 Score=39.36 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=73.5
Q ss_pred EEEcCCcEEEEEeCCCcEEEEECCCCc--------eeeeecCCCCEEEEEEec-----CCcEEEEEccCCcEEEEEEeCC
Q 001538 33 EFLQNQGFLISITNDNEIQVWSLESRS--------LACCLKWESNITAFSVIS-----GSHFMYIGDENGLMSVIKYDAD 99 (1057)
Q Consensus 33 ~F~~~~~~Lvs~s~d~~I~VWdl~s~~--------~l~tl~~~~~Ita~~~sp-----~~~~l~vG~~~G~v~v~~~d~~ 99 (1057)
+|-....-|++++.-|.|.|.+.+... .+..+.....|+|++..+ ..+.|++|+.+. ++.||.+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~---llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTS---LLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccce---EEEEEcc
Confidence 455555578888899999999877443 456666778899987665 467899999885 8888886
Q ss_pred CCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCc-CCCCCeEEEEECCCEEEEEEccCCeEEEE
Q 001538 100 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP-NSSGNRVLIAYENALVILWDVSEAQIIFV 165 (1057)
Q Consensus 100 ~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP-~d~g~~lli~~~dG~I~lWdl~~~~~~~~ 165 (1057)
+..=. =|+ .-...|.+|.+-- .+...-|++.+.++.|.=||..-.++..+
T Consensus 82 ~N~d~--Fyk--------------e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDL--FYK--------------EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchh--hhh--------------hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 54321 011 1123355554411 11122388888899988888765555433
No 375
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.51 E-value=7.8 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.9
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCC
Q 001538 211 SGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 211 dG~~latg~~DG~I~lWd~~~~~ 233 (1057)
.+..|++|+.||.|..+|..+|+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCc
Confidence 46778888899999999999885
No 376
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=92.41 E-value=19 Score=39.12 Aligned_cols=192 Identities=12% Similarity=0.189 Sum_probs=97.6
Q ss_pred cCCcEEEEcCCC-eEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCC--ce----eeeec--CC----CCEE
Q 001538 5 RDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SL----ACCLK--WE----SNIT 71 (1057)
Q Consensus 5 ~dG~I~v~g~~~-~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~--~~----l~tl~--~~----~~It 71 (1057)
..+.|.-+..++ +........-.-...+++..++.|+++-..++++.+.++... .+ +..+. .+ ..+.
T Consensus 42 ~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E 121 (248)
T PF06977_consen 42 EPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE 121 (248)
T ss_dssp TTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E
T ss_pred CCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE
Confidence 345555555542 222222333356889999988866665556899999998432 11 12222 22 3488
Q ss_pred EEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCE
Q 001538 72 AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 151 (1057)
Q Consensus 72 a~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~ 151 (1057)
.+++++..+.++++-+..-..++.++...... ...+.....-.. .......+.+++++|. .|++++.+.++..
T Consensus 122 Gla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~d~S~l~~~p~-t~~lliLS~es~~ 194 (248)
T PF06977_consen 122 GLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF---DLFVSDDQDLDD---DKLFVRDLSGLSYDPR-TGHLLILSDESRL 194 (248)
T ss_dssp EEEEETTTTEEEEEEESSSEEEEEEESTT-SS-----EEEE-HHHH----HT--SS---EEEEETT-TTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEeCCCChhhEEEccccCcc---ceeecccccccc---ccceeccccceEEcCC-CCeEEEEECCCCe
Confidence 99999999999999998877888887522100 011111100000 1122345789999997 5776777777889
Q ss_pred EEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEE
Q 001538 152 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 226 (1057)
Q Consensus 152 I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~l 226 (1057)
+..+| .+|+++..+.-. ...++-.+ .-+.--.++|. ++|+..+ .++-+...+
T Consensus 195 l~~~d-~~G~~~~~~~L~------------~g~~gl~~--------~~~QpEGIa~d-~~G~LYI-vsEpNlfy~ 246 (248)
T PF06977_consen 195 LLELD-RQGRVVSSLSLD------------RGFHGLSK--------DIPQPEGIAFD-PDGNLYI-VSEPNLFYR 246 (248)
T ss_dssp EEEE--TT--EEEEEE-S------------TTGGG-SS-----------SEEEEEE--TT--EEE-EETTTEEEE
T ss_pred EEEEC-CCCCEEEEEEeC------------CcccCccc--------ccCCccEEEEC-CCCCEEE-EcCCceEEE
Confidence 99999 678877654431 00000000 02344578999 8986444 445555444
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=1.7 Score=50.46 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=85.8
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCC-------eEEEEecCccEEEEEecCCC
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-------SLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~-------~Lavg~~dG~V~l~~~~~~~ 519 (1057)
+|.+|..-..+.=-|+..+.. +. +-.+.. .|+-+.+.|+.+ .-.+|-.+..|.-||.+.+.
T Consensus 348 il~~~~~~~~l~klDIE~GKI--Ve-------EWk~~~---di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKI--VE-------EWKFED---DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred EeeCCCCcCcceeeeccccee--ee-------EeeccC---CcceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence 344454444455556666652 11 112221 356666666654 13567778888888876432
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCC
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 599 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~ 599 (1057)
.. ...+.+ +- .+ .......|.+-..+| ++|+|+.+|.|+|||.. +..-.+ .++|...
T Consensus 416 ~~------------kl~~~q--~k----qy-~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKT--AlPgLG~ 472 (644)
T KOG2395|consen 416 KN------------KLAVVQ--SK----QY-STKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKT--ALPGLGD 472 (644)
T ss_pred cc------------eeeeee--cc----cc-ccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhh--cccccCC
Confidence 21 000100 00 01 123356777777788 99999999999999983 222222 3456789
Q ss_pred CeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeC
Q 001538 600 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 649 (1057)
Q Consensus 600 ~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~ 649 (1057)
+|+.+... +||.+|+ ||-+..+.+.|.
T Consensus 473 ~I~hVdvt----------------------adGKwil-~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 473 AIKHVDVT----------------------ADGKWIL-ATCKTYLLLIDT 499 (644)
T ss_pred ceeeEEee----------------------ccCcEEE-EecccEEEEEEE
Confidence 99999887 7899877 455677777764
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.79 E-value=0.5 Score=49.31 Aligned_cols=105 Identities=13% Similarity=0.054 Sum_probs=66.2
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccce
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 524 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~ 524 (1057)
..-++.|..||.|.+|...... .+..+-..+.+.-.+.|.--.++.+.+++..||.++.|+...++..+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g---------~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g-- 138 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEG---------AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG-- 138 (238)
T ss_pred CceEEeecccceEEEecCCccc---------hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceee--
Confidence 3467889999999999876221 11111011111122333333456688999999999999987765521
Q ss_pred eeeecCCCceEEeccCCcceeeEEEeeCC-CCeEEEEEcCCCCEEEEE--eCCceEEEEeCC
Q 001538 525 LFVLETKSEVHALPEGKISLCRAVFSLVN-SPVRALQFTSSGAKLAVG--FECGRVAVLDMN 583 (1057)
Q Consensus 525 ~~~~~~~~~~~~i~~~~g~~~~~~~~~h~-~~ItsLa~S~~g~~lA~G--~~dG~V~vwDi~ 583 (1057)
....|. .++..+..+..++++++. +.|..++.|++.
T Consensus 139 -----------------------~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 139 -----------------------YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred -----------------------eeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 222355 566666666677788887 788888888875
No 379
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.43 E-value=3.6 Score=43.01 Aligned_cols=119 Identities=17% Similarity=0.293 Sum_probs=71.6
Q ss_pred cEEEEEeCCCcEEEEECC--CCceeeeecCCCCEEEEEEecCCcEEEEEccCC------cEEEE-EEeCC--CCcee---
Q 001538 39 GFLISITNDNEIQVWSLE--SRSLACCLKWESNITAFSVISGSHFMYIGDENG------LMSVI-KYDAD--EGKLF--- 104 (1057)
Q Consensus 39 ~~Lvs~s~d~~I~VWdl~--s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G------~v~v~-~~d~~--~~~l~--- 104 (1057)
..|+.+...+.|++|++. ..++++++..-+.|..+..+..|+|+++=-+.. .+|++ +|+.. .....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 567666788899999998 345677777779999999999999998743322 23342 23322 11100
Q ss_pred ccCcccchhhh------hhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE
Q 001538 105 QLPYNISADAL------SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 162 (1057)
Q Consensus 105 ~~~~~i~~~~~------~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~ 162 (1057)
-.++.+..... .+.+.+| -..++.+|+.-|. .|+ |++|+++..+ ||.+.....
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElP--l~~~p~ciaCC~~-tG~-LlVg~~~~l~-lf~l~~~~~ 167 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELP--LSEPPLCIACCPV-TGN-LLVGCGNKLV-LFTLKYQTI 167 (215)
T ss_pred EcccccccCCCCccccceEEEEec--CCCCCCEEEecCC-CCC-EEEEcCCEEE-EEEEEEEEE
Confidence 00111111000 0111111 2457889999997 587 8888877655 999875544
No 380
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.33 E-value=11 Score=45.62 Aligned_cols=119 Identities=16% Similarity=0.247 Sum_probs=69.0
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeeecCCCC------EEE-EEEecCCcEEEEEcc---------CCcEEEEEEeCCCCc
Q 001538 39 GFLISITNDNEIQVWSLESRSLACCLKWESN------ITA-FSVISGSHFMYIGDE---------NGLMSVIKYDADEGK 102 (1057)
Q Consensus 39 ~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~------Ita-~~~sp~~~~l~vG~~---------~G~v~v~~~d~~~~~ 102 (1057)
++++.++.++.|.-+|.++|+.+=.+..... |++ ..+ ....+|+|+. +| .|+.+|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g--~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRG--ALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCc--EEEEEECCCCc
Confidence 4788888899999999999998766654332 221 122 2356777764 45 67888888877
Q ss_pred eeccCcccchhhhhhhcCCCCC--------CC-CCe-EEEEeCcCCCCCeEEEEECCC------------------EEEE
Q 001538 103 LFQLPYNISADALSEKAGFPLL--------SH-QPV-VGVLPHPNSSGNRVLIAYENA------------------LVIL 154 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~~~--------~~-~~V-~sI~~sP~d~g~~lli~~~dG------------------~I~l 154 (1057)
+. ++..... ......+.. .. ..| .+.+..+ .+.+|+++..++ .|.-
T Consensus 187 ~~---W~~~~~~-~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~A 260 (488)
T cd00216 187 LL---WRFYTTE-PDPNAFPTWGPDRQMWGPGGGTSWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVA 260 (488)
T ss_pred ee---eEeeccC-CCcCCCCCCCCCcceecCCCCCccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEE
Confidence 65 2221100 000000000 00 111 1233444 244688887765 6888
Q ss_pred EEccCCeEEEEec
Q 001538 155 WDVSEAQIIFVGG 167 (1057)
Q Consensus 155 Wdl~~~~~~~~~~ 167 (1057)
+|+.+|+.+-.+.
T Consensus 261 ld~~tG~~~W~~~ 273 (488)
T cd00216 261 LDADTGKVKWFYQ 273 (488)
T ss_pred EcCCCCCEEEEee
Confidence 9999999987654
No 381
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.31 E-value=9.3 Score=43.00 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=87.4
Q ss_pred EcCCcEEEEEeCCCcEEEEECC-CCceeeee---cCC--CCEE-EEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccC
Q 001538 35 LQNQGFLISITNDNEIQVWSLE-SRSLACCL---KWE--SNIT-AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 107 (1057)
Q Consensus 35 ~~~~~~Lvs~s~d~~I~VWdl~-s~~~l~tl---~~~--~~It-a~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~ 107 (1057)
+.+. .+.+.+.||.+.-..+. .|+..... ... ..+. .-+++..+.+++.-+-+|+|+-..+..+.-++. .+
T Consensus 145 ~~~~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~-~~ 222 (342)
T PF06433_consen 145 SGNR-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG-KP 222 (342)
T ss_dssp EETT-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-EE
T ss_pred cCCC-ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc-Cc
Confidence 3344 57788899999999987 56654222 221 2222 223455566666678899554444433221111 12
Q ss_pred cccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCC----------EEEEEEccCCeEEEEecCCcccccCCc
Q 001538 108 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA----------LVILWDVSEAQIIFVGGGKDLQLKDGV 177 (1057)
Q Consensus 108 ~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG----------~I~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (1057)
+.+.... +. ...-.++.---+++|+. .++|.+.-..| .|-+||+.+++.+.++..
T Consensus 223 ~~~~t~~--e~--~~~WrPGG~Q~~A~~~~--~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--------- 287 (342)
T PF06433_consen 223 WSLLTDA--EK--ADGWRPGGWQLIAYHAA--SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--------- 287 (342)
T ss_dssp EESS-HH--HH--HTTEEE-SSS-EEEETT--TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------
T ss_pred ccccCcc--cc--ccCcCCcceeeeeeccc--cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------
Confidence 2222111 11 00111223344667763 44565543322 577889999999988764
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCC-EEEEE-EcCCcEEEEeCCCCC
Q 001538 178 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVG-YIDGDILLWNTSTTA 233 (1057)
Q Consensus 178 ~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~-~latg-~~DG~I~lWd~~~~~ 233 (1057)
..++.++..+ .|.. +|++. ..++.|.+||..+|.
T Consensus 288 ---------------------~~~~~Si~Vs-qd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 288 ---------------------EHPIDSIAVS-QDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp ---------------------EEEESEEEEE-SSSS-EEEEEETTTTEEEEEETTT--
T ss_pred ---------------------CCccceEEEc-cCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 3457788888 7765 45444 357899999998874
No 382
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.83 E-value=25 Score=44.25 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=56.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCC----------C--eEEEEee------cCCCCCCCeEEEEEeeccCcc
Q 001538 552 VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL----------L--SVLFFTD------DISGSSSPIISMTWTEFKNTH 613 (1057)
Q Consensus 552 h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~----------~--~~l~~~~------~~~g~~~~V~sl~f~~~~~~~ 613 (1057)
..-.|..|.+||+|++||..+..| |.|..+-. + .+.+..- ..+.++..|..+.|++.+
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s--- 158 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS--- 158 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC---
Confidence 345799999999999999999988 77777621 1 1121110 012355678899998543
Q ss_pred cccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 614 SLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 614 ~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
+.+..|++-+.|+++++||...
T Consensus 159 ----------------~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 159 ----------------ESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ----------------CCCCeEEEEecCCEEEEEecCC
Confidence 4477899999999999999854
No 383
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.56 E-value=59 Score=41.24 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCCCeEEEEEcCCC------CEEEEEeCCceEEEEeC-CCCeEEEEeecCCC--CCCCeEEEEEeeccCcccccCCCCCC
Q 001538 552 VNSPVRALQFTSSG------AKLAVGFECGRVAVLDM-NLLSVLFFTDDISG--SSSPIISMTWTEFKNTHSLAKNPNHS 622 (1057)
Q Consensus 552 h~~~ItsLa~S~~g------~~lA~G~~dG~V~vwDi-~~~~~l~~~~~~~g--~~~~V~sl~f~~~~~~~~~~~~~~~~ 622 (1057)
-...|.||-++|-| +++|+|..+..+.+.-. .+...++..+. ++ .+..|.-.+|.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l-~~~~iPRSIl~~~~e--------------- 592 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL-SGEIIPRSILLTTFE--------------- 592 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc-CCCccchheeeEEee---------------
Confidence 35689999999753 37999999887776654 33333333322 11 22334444443
Q ss_pred CCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 623 EREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 623 ~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
-|..+|+++..||.++-+-..
T Consensus 593 -------~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 593 -------GDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred -------ccceEEEEEcCCceEEEEEEE
Confidence 447899999999998766443
No 384
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.56 E-value=4.9 Score=47.55 Aligned_cols=58 Identities=10% Similarity=0.231 Sum_probs=40.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCC
Q 001538 40 FLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 99 (1057)
Q Consensus 40 ~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~ 99 (1057)
.|+....++.|.+||+.+++++..+.... |..+.|+++++++++.+.+. +.|+.++.+
T Consensus 118 ~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~-i~il~~~~~ 175 (443)
T PF04053_consen 118 NLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDS-IYILKYNLE 175 (443)
T ss_dssp SSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-S-EEEEEE-HH
T ss_pred cEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCe-EEEEEecch
Confidence 45555666699999999999999997664 89999999999999998775 788888764
No 385
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.39 E-value=23 Score=43.50 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=42.9
Q ss_pred CceEEEEe-c---CeeEEeeccccccccceeeeeec---cC----CcceeeeeeeeCCceeEEEEEEeeCcEEEecCCCh
Q 001538 730 DALVLLCC-E---DSVRLYSRKSVIQGNNKTVQKVK---HK----NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDL 798 (1057)
Q Consensus 730 ~~~v~~~s-e---~~ir~~s~~~~~~g~~k~~~K~~---~~----~~~~~~~~~~~~~~~~~l~~l~~~G~i~i~SlP~L 798 (1057)
+.++++|. + -..|+|.+.. ....+..++ +. ..|+++.. ++ -|-.+ .++.|.++|||.+
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~~----~~~~~~El~s~~~e~~~~~~s~f~Y~---~G---~LY~l-~~~~i~~ysip~f 261 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLSN----ESSSIFELSSTILENFGLEDSKFCYQ---FG---KLYQL-SKKTISSYSIPNF 261 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEecc----CCcceEEeehheeccCCcccceEEEe---CC---EEEEE-eCCEEEEEEcCCc
Confidence 45566665 3 5788888821 123333332 22 23444432 11 23333 8899999999999
Q ss_pred hhcccccccceee
Q 001538 799 ELVMESSLMSILR 811 (1057)
Q Consensus 799 ~~~~~~~~~~~~~ 811 (1057)
......+++.++.
T Consensus 262 ~~~~tI~l~~ii~ 274 (670)
T PF10395_consen 262 QIQKTISLPSIID 274 (670)
T ss_pred eEEEEEEechhhc
Confidence 9999998885433
No 386
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.71 E-value=34 Score=38.34 Aligned_cols=164 Identities=9% Similarity=0.104 Sum_probs=81.4
Q ss_pred CeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCC-CceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEE
Q 001538 16 GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-RSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVI 94 (1057)
Q Consensus 16 ~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s-~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~ 94 (1057)
+.+.+. .+....+..+..++++.|++++...+...-||--. --..+.......|.+|.+.|++...+++ ..|. |.
T Consensus 135 tW~~~~-~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~--~~ 210 (302)
T PF14870_consen 135 TWQAVV-SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ--IQ 210 (302)
T ss_dssp SEEEEE--S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE--EE
T ss_pred CeeEcc-cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE--EE
Confidence 444443 34456789999999997776665556666787533 2344555566899999999997655544 7774 33
Q ss_pred EEe-CCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEE-EecCCccc
Q 001538 95 KYD-ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQ 172 (1057)
Q Consensus 95 ~~d-~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~-~~~~~~~~ 172 (1057)
.-+ .+. .. .+. +.+.......-.+..++|.| ++. +.+++..|.+ +.+...|+-=+ .-..
T Consensus 211 ~s~~~~~--~~--~w~-------~~~~~~~~~~~~~ld~a~~~--~~~-~wa~gg~G~l-~~S~DgGktW~~~~~~---- 271 (302)
T PF14870_consen 211 FSDDPDD--GE--TWS-------EPIIPIKTNGYGILDLAYRP--PNE-IWAVGGSGTL-LVSTDGGKTWQKDRVG---- 271 (302)
T ss_dssp EEE-TTE--EE--EE----------B-TTSS--S-EEEEEESS--SS--EEEEESTT-E-EEESSTTSS-EE-GGG----
T ss_pred EccCCCC--cc--ccc-------cccCCcccCceeeEEEEecC--CCC-EEEEeCCccE-EEeCCCCccceECccc----
Confidence 333 111 11 010 10000112234589999998 454 7778888887 77776664321 1111
Q ss_pred ccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEE
Q 001538 173 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 227 (1057)
Q Consensus 173 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lW 227 (1057)
......+..+.|. ++.+-++.| .||.|.-|
T Consensus 272 -----------------------~~~~~n~~~i~f~-~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 272 -----------------------ENVPSNLYRIVFV-NPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp -----------------------TTSSS---EEEEE-ETTEEEEE--STTEEEEE
T ss_pred -----------------------cCCCCceEEEEEc-CCCceEEEC-CCcEEEEe
Confidence 0114568889997 444445555 68888766
No 387
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=89.43 E-value=0.24 Score=37.80 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhhHhHHHHhhchhhHHHHHHHHHHHhh
Q 001538 1012 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1050 (1057)
Q Consensus 1012 ~~l~e~~~kl~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 1050 (1057)
+|+.+|.+||=.+-+.+.-=.++|+.+..+|++||.+|-
T Consensus 1 ekil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred ChHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478899999998888766667799999999999999973
No 388
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.55 E-value=14 Score=45.81 Aligned_cols=184 Identities=11% Similarity=0.080 Sum_probs=102.6
Q ss_pred ccCCCCcEEEEEeCCCcEEEEecCCCceeE----Eeec--ccce-----eeeeecCCCCCEEEEEEecCCC--eEEEEec
Q 001538 440 KCHSVDRVYLAGYHDGSVRIWDATYPVFKL----ICAL--DAEV-----QGIEVAGSRAPVSTLSFCFINS--SLAVGNE 506 (1057)
Q Consensus 440 ~~~~~~~~liTG~~DGtVriWd~~~~~l~~----l~~l--~~~v-----~~i~l~~~~~~V~~v~fspd~~--~Lavg~~ 506 (1057)
+... +++|+.+. .+.|.||+.......+ ...+ +... ..+.....+..|+.|..+--+. .|+++..
T Consensus 45 alsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~D 122 (717)
T PF08728_consen 45 ALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTD 122 (717)
T ss_pred EEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEec
Confidence 3444 66777765 6899999987644211 1111 1100 0011112445688887665444 6889999
Q ss_pred CccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEc--CCCCEEEEEeCCceEEEEeCCC
Q 001538 507 FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT--SSGAKLAVGFECGRVAVLDMNL 584 (1057)
Q Consensus 507 dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S--~~g~~lA~G~~dG~V~vwDi~~ 584 (1057)
||.|.+|..+.=-..... ........ .......|...+. ....++.|++. ...+++|+++....|.||-...
T Consensus 123 dG~V~~Yyt~~I~~~i~~-~~~~~~~~----~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 123 DGDVLAYYTETIIEAIER-FSEDNDSG----FSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred CCeEEEEEHHHHHHHHHh-hccccccc----cccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 999999976421000000 00000000 0000112222333 34588999998 8888999999999999987643
Q ss_pred C-eEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCc-EEEEEecCCeEEEEeC
Q 001538 585 L-SVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEE-VIIVLFKDAKISIVGG 649 (1057)
Q Consensus 585 ~-~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~-~L~sgt~dg~i~v~d~ 649 (1057)
. ...+... ...+..-|.+|+|-.+... +.|. .|++++-.|.+.+|+.
T Consensus 197 ~~~r~~~~~-s~~~~hNIP~VSFl~~~~d-----------------~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VDERFYHVP-SHQHSHNIPNVSFLDDDLD-----------------PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccc-ccccccCCCeeEeecCCCC-----------------CccceEEEEEeccCcEEEEEE
Confidence 1 1111100 0114456889999854332 4443 7888999999999875
No 389
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.53 E-value=82 Score=40.06 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=69.3
Q ss_pred CEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCE
Q 001538 488 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 567 (1057)
Q Consensus 488 ~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~ 567 (1057)
+|.++.. -++++||. -+-.|+||++...+... .-..|..++.+|...-.|..
T Consensus 831 av~aL~~-fngkllA~--In~~vrLye~t~~~eLr-------------------------~e~~~~~~~~aL~l~v~gde 882 (1096)
T KOG1897|consen 831 AVYALVE-FNGKLLAG--INQSVRLYEWTTERELR-------------------------IECNISNPIIALDLQVKGDE 882 (1096)
T ss_pred ceeehhh-hCCeEEEe--cCcEEEEEEccccceeh-------------------------hhhcccCCeEEEEEEecCcE
Confidence 4544422 24554443 34589999998763321 12246778999999999999
Q ss_pred EEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEE
Q 001538 568 LAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 647 (1057)
Q Consensus 568 lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~ 647 (1057)
+|+|+-=+.+.+.-.+..+=.+..-...-++.-.+++++- +....+.+.++|.+++.
T Consensus 883 I~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil-----------------------~~d~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 883 IAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEIL-----------------------DDDTYLGAENSGNLFTV 939 (1096)
T ss_pred EEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEe-----------------------cCceEEeecccccEEEE
Confidence 9999999998888775543111111112266677777764 45556777788876665
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=87.76 E-value=6.3 Score=44.28 Aligned_cols=98 Identities=12% Similarity=0.015 Sum_probs=63.2
Q ss_pred CEEEEEEecCCCeEEEEecC-ccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCC
Q 001538 488 PVSTLSFCFINSSLAVGNEF-GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 566 (1057)
Q Consensus 488 ~V~~v~fspd~~~Lavg~~d-G~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~ 566 (1057)
--+.|+||||++.|.++... +.+.-|++........ +-.....+....+.--.++...+|.
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~------------------~~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG------------------GRRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC------------------CcceEEEccCCCCCCCceEEeCCCC
Confidence 34679999999988887654 6666666653111000 0000112222445556688888998
Q ss_pred EEEEEeCCc-eEEEEeCCCCeEEEEeecCCCCCCCeEEEEEe
Q 001538 567 KLAVGFECG-RVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 567 ~lA~G~~dG-~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~ 607 (1057)
+-+++..+| .|.+|+.. ++++..... ....+++++|.
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~~t~~~Fg 263 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKRPTNPAFG 263 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEEC---CCCCCccceEe
Confidence 876666665 89999998 777776665 34778899997
No 391
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.70 E-value=6.3 Score=49.97 Aligned_cols=163 Identities=14% Similarity=0.170 Sum_probs=93.0
Q ss_pred EEEEEcCCcEEEEEeCCCcEEEEECCCCce-----------e-----eeecCC--CCEEEEEEecCCcE-EEEEccCCcE
Q 001538 31 NLEFLQNQGFLISITNDNEIQVWSLESRSL-----------A-----CCLKWE--SNITAFSVISGSHF-MYIGDENGLM 91 (1057)
Q Consensus 31 ~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~-----------l-----~tl~~~--~~Ita~~~sp~~~~-l~vG~~~G~v 91 (1057)
.|+-++.-+.+++++..+.+.|+-..+--+ + .++.++ -.|..+...+|+.. +++-+.+| .
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng-~ 124 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNG-E 124 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCC-c
Confidence 455566666677777777666664332111 1 122222 24455666666544 44455565 4
Q ss_pred EEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeE-EEEecCCc
Q 001538 92 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKD 170 (1057)
Q Consensus 92 ~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~-~~~~~~~~ 170 (1057)
.|..||...-+.. .|.-...-+..+ .......-+.++.|+|.-.-+ .++...|+.|++..+..-.. +..+..
T Consensus 125 ~v~~fD~~~fs~s--~~~~~~pl~~s~--ts~ek~vf~~~~~wnP~vp~n-~av~l~dlsl~V~~~~~~~~~v~s~p~-- 197 (1405)
T KOG3630|consen 125 AVYSFDLEEFSES--RYETTVPLKNSA--TSFEKPVFQLKNVWNPLVPLN-SAVDLSDLSLRVKSTKQLAQNVTSFPV-- 197 (1405)
T ss_pred eEEEEehHhhhhh--hhhhcccccccc--chhccccccccccccCCccch-hhhhccccchhhhhhhhhhhhhcccCc--
Confidence 6788887543222 111100000011 112234456889999964333 67777888877666543221 111111
Q ss_pred ccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 171 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
...++|+||+ |.|..++.|...|++.-+...
T Consensus 198 ----------------------------t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 198 ----------------------------TNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ----------------------------ccceeeEEec-cccceeeEecCCCeEEEeecc
Confidence 5678999999 999999999999999988653
No 392
>PRK13616 lipoprotein LpqB; Provisional
Probab=87.10 E-value=10 Score=46.77 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=55.9
Q ss_pred CEEEEEEecCCCeEEEEecCcc-EEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCC
Q 001538 488 PVSTLSFCFINSSLAVGNEFGL-VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 566 (1057)
Q Consensus 488 ~V~~v~fspd~~~Lavg~~dG~-V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~ 566 (1057)
..++-.|+|||+.|++...... +++.+... .+.++.+....| .+.. ...+.|++++|||||.
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~-------------~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~ 460 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA-------------TGQLARTPVDAS-AVAS---RVPGPISELQLSRDGV 460 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCC-------------CceEEEEeccCc-hhhh---ccCCCcCeEEECCCCC
Confidence 3677889999998887754323 33322211 112332222111 1111 2356799999999999
Q ss_pred EEEEEeCCceEEE---EeCCCCeEEE-E-eecCCCCCCCeEEEEEe
Q 001538 567 KLAVGFECGRVAV---LDMNLLSVLF-F-TDDISGSSSPIISMTWT 607 (1057)
Q Consensus 567 ~lA~G~~dG~V~v---wDi~~~~~l~-~-~~~~~g~~~~V~sl~f~ 607 (1057)
++|.-. +|.|.| .....+..-. . .....+....+.++.|.
T Consensus 461 RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 461 RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 988866 477877 4544553111 0 01112233446788887
No 393
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.28 E-value=3.3 Score=44.10 Aligned_cols=70 Identities=26% Similarity=0.251 Sum_probs=49.2
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeee---------------cCCCCEEEEEEecCCcEEEEEccCCcE
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---------------KWESNITAFSVISGSHFMYIGDENGLM 91 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl---------------~~~~~Ita~~~sp~~~~l~vG~~~G~v 91 (1057)
.++..|. .++.||++++.+|.+.|||+.+++.+..- .....|+.+.++.+|.- ++...+|..
T Consensus 13 s~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P-iV~lsng~~ 89 (219)
T PF07569_consen 13 SPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP-IVTLSNGDS 89 (219)
T ss_pred CceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE-EEEEeCCCE
Confidence 3454544 46679999999999999999998874332 12357889999876654 456778866
Q ss_pred EEEEEeCC
Q 001538 92 SVIKYDAD 99 (1057)
Q Consensus 92 ~v~~~d~~ 99 (1057)
++|+.+..
T Consensus 90 y~y~~~L~ 97 (219)
T PF07569_consen 90 YSYSPDLG 97 (219)
T ss_pred EEeccccc
Confidence 66554443
No 394
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.13 E-value=3.8 Score=47.73 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=66.7
Q ss_pred EEEEcCCCCEEEEEeCCceEEE---EeC-CCC------eEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCC
Q 001538 558 ALQFTSSGAKLAVGFECGRVAV---LDM-NLL------SVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVP 627 (1057)
Q Consensus 558 sLa~S~~g~~lA~G~~dG~V~v---wDi-~~~------~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~ 627 (1057)
+++.||+|.+||.|..+..|.+ |+. +.+ .+.+......+....|+++.+-+..... ...
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~-----------~s~ 74 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQK-----------RST 74 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeeccc-----------ccC
Confidence 5788999999999999887766 543 111 1222222211223689999887654431 033
Q ss_pred CCCCCcEEEEEecCCeEEEEeCCCcceeecCccccCCcceeEEEEee
Q 001538 628 VNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVI 674 (1057)
Q Consensus 628 ~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~~i~p~~~~~~~~~~~~ 674 (1057)
..+|..++++|+.+|.|++|.. +|.+|-+..+|+ ..++.+.+.
T Consensus 75 ~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~---~pV~~ik~~ 117 (415)
T PF14655_consen 75 GGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHE---EPVLKIKCR 117 (415)
T ss_pred CCCCcEEEEEEecccEEEEEec-cchHHHHHhcCc---cceEEEEec
Confidence 4588999999999999999976 788876664543 344444443
No 395
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.04 E-value=19 Score=34.85 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=75.4
Q ss_pred EEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcC-----CCC
Q 001538 492 LSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-----SGA 566 (1057)
Q Consensus 492 v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~-----~g~ 566 (1057)
-.|......|+.++.-|.|.|++.......... ....+. .+ --...|++|+-.+ ...
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-----~~~~i~------------~L-Nin~~italaaG~l~~~~~~D 65 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-----QDSDIS------------FL-NINQEITALAAGRLKPDDGRD 65 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc-----ccCcee------------EE-ECCCceEEEEEEecCCCCCcC
Confidence 356666678889999999999987644321110 011111 22 2355677776444 345
Q ss_pred EEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEE
Q 001538 567 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISI 646 (1057)
Q Consensus 567 ~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v 646 (1057)
.|.+|+... |..||+....-+|.... ...|.++.+..... .+..++++|++ .+|.=
T Consensus 66 ~LliGt~t~-llaYDV~~N~d~Fyke~----~DGvn~i~~g~~~~------------------~~~~l~ivGGn-csi~G 121 (136)
T PF14781_consen 66 CLLIGTQTS-LLAYDVENNSDLFYKEV----PDGVNAIVIGKLGD------------------IPSPLVIVGGN-CSIQG 121 (136)
T ss_pred EEEEeccce-EEEEEcccCchhhhhhC----ccceeEEEEEecCC------------------CCCcEEEECce-EEEEE
Confidence 789999886 89999988877776554 67899998874322 33566676665 45777
Q ss_pred EeCCC
Q 001538 647 VGGSS 651 (1057)
Q Consensus 647 ~d~~t 651 (1057)
+|.+-
T Consensus 122 fd~~G 126 (136)
T PF14781_consen 122 FDYEG 126 (136)
T ss_pred eCCCC
Confidence 76553
No 396
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=85.80 E-value=0.4 Score=56.49 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=81.8
Q ss_pred CCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCc
Q 001538 454 DGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSE 533 (1057)
Q Consensus 454 DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~ 533 (1057)
|-.+.|||..+.-..+.... .... +....+.+++|-.+.+.+.+|.....|+++|++..-....
T Consensus 128 ds~~~Iwdi~s~ltvPke~~--~fs~----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---------- 191 (783)
T KOG1008|consen 128 DSSLKIWDINSLLTVPKESP--LFSS----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---------- 191 (783)
T ss_pred cCCccceecccccCCCcccc--cccc----ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----------
Confidence 55789999876521111110 0000 1122455788888899999999999999999974322111
Q ss_pred eEEeccCCcceeeEEEeeCCCCeEEEEEcC-CCCEEEEEeCCceEEEEe-CCCCeEEEEeecCC--CCCCCeEEEEEeec
Q 001538 534 VHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLD-MNLLSVLFFTDDIS--GSSSPIISMTWTEF 609 (1057)
Q Consensus 534 ~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~-~g~~lA~G~~dG~V~vwD-i~~~~~l~~~~~~~--g~~~~V~sl~f~~~ 609 (1057)
...+..+..+..+| .+.++++-+ ||.|.+|| .+.-+-.+..-... .....+..++|.+.
T Consensus 192 ----------------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 192 ----------------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred ----------------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 01122344566677 667777766 89999999 32211111100100 01224888888854
Q ss_pred cCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCC
Q 001538 610 KNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 650 (1057)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~ 650 (1057)
.. |.+++..-..++|+.+|..
T Consensus 255 rt--------------------glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 255 RT--------------------GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cc--------------------chhhhhccCcceEEEeccc
Confidence 21 4444444566888888853
No 397
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=85.70 E-value=0.41 Score=56.43 Aligned_cols=188 Identities=13% Similarity=0.169 Sum_probs=103.8
Q ss_pred ccccCCcEEEEc--CCCeE-EEEEcCCCCCeeEEEEEcC-CcEEEEEe----CCCcEEEEECCCCc--eeeeecC----C
Q 001538 2 CLCRDGRIKVIG--GDGIE-GLLISPSQLPYKNLEFLQN-QGFLISIT----NDNEIQVWSLESRS--LACCLKW----E 67 (1057)
Q Consensus 2 vgt~dG~I~v~g--~~~~e-~~~~~~~~~~v~~L~F~~~-~~~Lvs~s----~d~~I~VWdl~s~~--~l~tl~~----~ 67 (1057)
||..+|.|-+-- .+--. ..++.+...++++|+|.+= ...|+++= .|-.+.|||+.++- +..+..+ .
T Consensus 75 vG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l 154 (783)
T KOG1008|consen 75 VGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTL 154 (783)
T ss_pred hccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccc
Confidence 566778887743 22211 3344556678999999984 34566543 45679999998872 2111111 1
Q ss_pred CCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE
Q 001538 68 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 147 (1057)
Q Consensus 68 ~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~ 147 (1057)
....++++..+.+.+..|.....+.++.+.... . +... -....|..+...|. .++ -+..+
T Consensus 155 ~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~---~---------~~~s------vnTk~vqG~tVdp~-~~n-Y~cs~ 214 (783)
T KOG1008|consen 155 DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL---D---------SVSS------VNTKYVQGITVDPF-SPN-YFCSN 214 (783)
T ss_pred cCccccccccCcchhhcccccchhhhhhhhhhh---h---------hhhh------hhhhhcccceecCC-CCC-ceecc
Confidence 233466677777777777777755444332110 0 0000 01224667777775 244 45666
Q ss_pred CCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCC--CCEEEEEEcCCcEE
Q 001538 148 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGYIDGDIL 225 (1057)
Q Consensus 148 ~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pd--G~~latg~~DG~I~ 225 (1057)
.||.|.+||- ..+....+.- -++ +.+.....+..++|. |- |...+.--..++|+
T Consensus 215 ~dg~iAiwD~-~rnienpl~~-------i~~---------------~~N~~~~~l~~~ayc-Ptrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 215 SDGDIAIWDT-YRNIENPLQI-------ILR---------------NENKKPKQLFALAYC-PTRTGLLAVLSRDSITIR 270 (783)
T ss_pred ccCceeeccc-hhhhccHHHH-------Hhh---------------CCCCcccceeeEEec-cCCcchhhhhccCcceEE
Confidence 6999999994 1122111110 000 011114468999998 54 43333344558999
Q ss_pred EEeCCCCC
Q 001538 226 LWNTSTTA 233 (1057)
Q Consensus 226 lWd~~~~~ 233 (1057)
++|+..-.
T Consensus 271 lydi~~v~ 278 (783)
T KOG1008|consen 271 LYDICVVG 278 (783)
T ss_pred EecccccC
Confidence 99986543
No 398
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.30 E-value=36 Score=38.68 Aligned_cols=117 Identities=15% Similarity=0.305 Sum_probs=68.5
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCc------EEEEECCC--Cc---e--e--eeecCC-C--------CEEEEEEecCCcEE
Q 001538 27 LPYKNLEFLQNQGFLISITNDNE------IQVWSLES--RS---L--A--CCLKWE-S--------NITAFSVISGSHFM 82 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~------I~VWdl~s--~~---~--l--~tl~~~-~--------~Ita~~~sp~~~~l 82 (1057)
..+..|.+.++.+.++++++++. +...++.. +. + . ..+..+ + ...++++.+ ...+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCE
Confidence 34778999977778888888888 66566544 11 1 1 111111 1 344778844 4456
Q ss_pred EEEccCC------cEEEEEEeCCCCceeccCcccchhhhhhhcC-CCCCCCCCeEEEEeCcCCCCCeEEEEECC
Q 001538 83 YIGDENG------LMSVIKYDADEGKLFQLPYNISADALSEKAG-FPLLSHQPVVGVLPHPNSSGNRVLIAYEN 149 (1057)
Q Consensus 83 ~vG~~~G------~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g-~~~~~~~~V~sI~~sP~d~g~~lli~~~d 149 (1057)
+++++.+ . +|+.++.+ |++. ..+.+|........+ .....+...-+|+++| +|+.|+++-+.
T Consensus 99 ~is~E~~~~~~~~p-~I~~~~~~-G~~~-~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~~~~E~ 167 (326)
T PF13449_consen 99 WISSEGGRTGGIPP-RIRRFDLD-GRVI-RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLFAAMES 167 (326)
T ss_pred EEEeCCccCCCCCC-EEEEECCC-Cccc-ceEccccccccccCccccccCCCCeEEEEECC--CCCEEEEEECc
Confidence 6677776 4 89999877 5552 134444322101100 1123466789999999 68867776553
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.21 E-value=2.3 Score=32.37 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCceEEEEeCCC
Q 001538 554 SPVRALQFTSSG---AKLAVGFECGRVAVLDMNL 584 (1057)
Q Consensus 554 ~~ItsLa~S~~g---~~lA~G~~dG~V~vwDi~~ 584 (1057)
+.|.+++|||.. .+||..=..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4999999999999999985
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.91 E-value=29 Score=42.64 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=57.5
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCC
Q 001538 549 FSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPV 628 (1057)
Q Consensus 549 ~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~ 628 (1057)
+...-...+-+.-|..++..++-+....+.|||.+++...|.... ....+|..|.|...
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst------------------- 83 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTST------------------- 83 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeec-------------------
Confidence 333444566677777776655555555799999999887666543 34688999999842
Q ss_pred CCCCcEEEEEecCCeEEEEe
Q 001538 629 NPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 629 ~~d~~~L~sgt~dg~i~v~d 648 (1057)
|+++.+++.+....|.++-
T Consensus 84 -~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 84 -PDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred -CCCCEEEEEEcCcEEEEEE
Confidence 7788899999999999994
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=84.38 E-value=41 Score=36.69 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=58.7
Q ss_pred CEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCE
Q 001538 488 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 567 (1057)
Q Consensus 488 ~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~ 567 (1057)
.++.-+|++++...++...+..++++......... -..+ ......+.|++|++||||.+
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~-----------~~~v----------~~~~~~~~I~~l~vSpDG~R 125 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE-----------PVEV----------DWPGLRGRITALRVSPDGTR 125 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcce-----------eEEe----------cccccCCceEEEEECCCCcE
Confidence 67788999998887877777777777532211100 0000 11111228999999999999
Q ss_pred EEEEe---CCceEEEEeCC---CC--eEEE-EeecCCCCCCCeEEEEEe
Q 001538 568 LAVGF---ECGRVAVLDMN---LL--SVLF-FTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 568 lA~G~---~dG~V~vwDi~---~~--~~l~-~~~~~~g~~~~V~sl~f~ 607 (1057)
+|.-. .++.|.|=-+. .+ ..+- -..........++++.|.
T Consensus 126 vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 126 VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred EEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 88766 35777776552 22 1211 111111234678999998
No 402
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.36 E-value=49 Score=37.98 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=51.2
Q ss_pred CCcEEEEcCCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec-CC-----------------
Q 001538 6 DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WE----------------- 67 (1057)
Q Consensus 6 dG~I~v~g~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~-~~----------------- 67 (1057)
.+.+.||.....+..-..+....+....|+|++.+|+-+ .++.|.++++.++....-.. .+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 356777776665544333335679999999999888877 57899999998875432111 11
Q ss_pred CCEEEEEEecCCcEEEEE
Q 001538 68 SNITAFSVISGSHFMYIG 85 (1057)
Q Consensus 68 ~~Ita~~~sp~~~~l~vG 85 (1057)
+.-.++-++|++++|+.-
T Consensus 101 ~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp SSSBSEEE-TTSSEEEEE
T ss_pred ccccceEECCCCCEEEEE
Confidence 122578899999988653
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.26 E-value=13 Score=45.48 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=65.4
Q ss_pred CcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEe--cCCCeEEEEecCccEEEEEecCCCCcc
Q 001538 445 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC--FINSSLAVGNEFGLVYIYNLNGSLDAK 522 (1057)
Q Consensus 445 ~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fs--pd~~~Lavg~~dG~V~l~~~~~~~~~~ 522 (1057)
+++.+.-+...++.|||...+.+..-.. + .....|..++|. |+++.+.+-+-...|.+|.-.+..+..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~---------f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEES---------F-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeee---------e-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 3333333333359999998877322111 1 223588899886 778766555566789998643322211
Q ss_pred ceeeeecCCCceEEeccCCcceeeEE--EeeCC-CCeEEEEEcCCCCEEEEEeCCceEEEEeCC
Q 001538 523 NFLFVLETKSEVHALPEGKISLCRAV--FSLVN-SPVRALQFTSSGAKLAVGFECGRVAVLDMN 583 (1057)
Q Consensus 523 ~~~~~~~~~~~~~~i~~~~g~~~~~~--~~~h~-~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~ 583 (1057)
. .+.+.++.. +..|+ .+|.+..|-++| .|++|+.+. +.|+|-.
T Consensus 111 ~----------------~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sGNq-lfv~dk~ 156 (631)
T PF12234_consen 111 K----------------GPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSGNQ-LFVFDKW 156 (631)
T ss_pred C----------------CcccceeEEEEeecCCCCCccceeEecCC-eEEEEeCCE-EEEECCC
Confidence 0 111122211 22344 689999999999 777777765 8888753
No 404
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=83.70 E-value=91 Score=36.68 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=35.3
Q ss_pred cEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001538 456 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 456 tVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
.|+||+.++..+.. +.... ..|.++.|+.+ ..|++-..||.|++|++....
T Consensus 62 ~I~iys~sG~ll~~----------i~w~~--~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSS----------IPWDS--GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEE----------EEECC--CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce
Confidence 58888887654322 22222 58999999875 456666789999999985443
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=83.02 E-value=21 Score=42.68 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=22.9
Q ss_pred CCCeEEEEEecCCCCEEEEEEcC-CcEEEEeCC
Q 001538 199 EKEISALCWASSSGSILAVGYID-GDILLWNTS 230 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~D-G~I~lWd~~ 230 (1057)
.+.|.|+||. +||.+++++-.. =.-++||-.
T Consensus 155 ~G~IhCACWT-~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 155 SGLIHCACWT-KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceEEEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence 6789999999 999887766322 235788853
No 406
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=82.63 E-value=1.2e+02 Score=38.73 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=34.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEe
Q 001538 552 VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 591 (1057)
Q Consensus 552 h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~ 591 (1057)
....|.++....-+.+|+..++||+|.++|..+-+.+...
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~ 297 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET 297 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Confidence 3567999999988889999999999999999988776554
No 407
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=81.07 E-value=53 Score=35.83 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=83.3
Q ss_pred cCCCCcEEEEEeCCC--cEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 441 CHSVDRVYLAGYHDG--SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 441 ~~~~~~~liTG~~DG--tVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
+..++.++-+.+.-| .||.+|..++.......+....+ -..|+...| +....-=.+|...+||..+
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F----------gEGit~~~d-~l~qLTWk~~~~f~yd~~t- 119 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF----------GEGITILGD-KLYQLTWKEGTGFVYDPNT- 119 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------EEEEEEETT-EEEEEESSSSEEEEEETTT-
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc----------ceeEEEECC-EEEEEEecCCeEEEEcccc-
Confidence 335566777777666 59999999887543333433322 122322221 2222223445555665432
Q ss_pred CCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCC
Q 001538 519 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 598 (1057)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~ 598 (1057)
++.+..+.- .+.=+.|+ .||+.|...+.+..|.++|-.+.+.+....... ..
T Consensus 120 ------------------------l~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g 171 (264)
T PF05096_consen 120 ------------------------LKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NG 171 (264)
T ss_dssp ------------------------TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TT
T ss_pred ------------------------ceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CC
Confidence 222223321 23345555 567788888888889999998887776665421 23
Q ss_pred CCe---EEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeec
Q 001538 599 SPI---ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 657 (1057)
Q Consensus 599 ~~V---~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~ 657 (1057)
.+| .-|+|. +|.+.+=.=..-.|..+|.+||.+++.
T Consensus 172 ~pv~~LNELE~i-----------------------~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 172 RPVSNLNELEYI-----------------------NGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EE---EEEEEEE-----------------------TTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred EECCCcEeEEEE-----------------------cCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 333 445664 355555555677899999999988764
No 408
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.96 E-value=52 Score=38.62 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=63.3
Q ss_pred eeEEEEEcCCcEEE-EEeCCC----cEEEEECCCCceeeeecCCCCEEEEEEecCCcEEE-EEccCC--------cEEEE
Q 001538 29 YKNLEFLQNQGFLI-SITNDN----EIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENG--------LMSVI 94 (1057)
Q Consensus 29 v~~L~F~~~~~~Lv-s~s~d~----~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~-vG~~~G--------~v~v~ 94 (1057)
+....++|++.+|+ +.+..| +|+|+|+.+|+.+...........++|.++++.++ +..... .-.||
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 44678999998766 445544 59999999998765331111223489999977654 443332 33455
Q ss_pred EEeCCCCc----eeccCcccchhhhhhhcCCCCCCCC-CeEEEEeCcCCCCCeEEEEECCC----EEEEEEccC
Q 001538 95 KYDADEGK----LFQLPYNISADALSEKAGFPLLSHQ-PVVGVLPHPNSSGNRVLIAYENA----LVILWDVSE 159 (1057)
Q Consensus 95 ~~d~~~~~----l~~~~~~i~~~~~~~~~g~~~~~~~-~V~sI~~sP~d~g~~lli~~~dG----~I~lWdl~~ 159 (1057)
.+..+... +. |.- .... ..+.+..++ ++++|++....+ .+.+.|+..
T Consensus 206 ~~~~gt~~~~d~lv---fe~-------------~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 206 RHKLGTPQSEDELV---FEE-------------PDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEETTS-GGG-EEE---EC--------------TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEECCCChHhCeeE---Eee-------------cCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccc
Confidence 54443211 11 111 1112 267788887 688777654433 355556654
No 409
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.62 E-value=1.2e+02 Score=35.39 Aligned_cols=150 Identities=9% Similarity=0.068 Sum_probs=76.2
Q ss_pred EEEEcCCcEEEEEeCCCcE-EEEECCCCc-eeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcc
Q 001538 32 LEFLQNQGFLISITNDNEI-QVWSLESRS-LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYN 109 (1057)
Q Consensus 32 L~F~~~~~~Lvs~s~d~~I-~VWdl~s~~-~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~ 109 (1057)
+...+++. ++.++..|.+ +-||--... ..........++++.+.+++.++++| ..|.+ ++..| .++ .+.
T Consensus 244 v~~~~dG~-~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d--~G~----~~~ 314 (398)
T PLN00033 244 VNRSPDGD-YVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKG--TGL----TEE 314 (398)
T ss_pred EEEcCCCC-EEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecC--CCC----ccc
Confidence 34455654 3334444433 223321111 22333445678999999888877766 55632 22222 221 011
Q ss_pred cchhhhhhhcCCCC-CCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCc
Q 001538 110 ISADALSEKAGFPL-LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTF 188 (1057)
Q Consensus 110 i~~~~~~~~~g~~~-~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 188 (1057)
+.... + .+. .....+.++.|.+ +++ +++++.+|.+ +.....|+-=..... +
T Consensus 315 ~~~f~--~---~~~~~~~~~l~~v~~~~--d~~-~~a~G~~G~v-~~s~D~G~tW~~~~~------------------~- 366 (398)
T PLN00033 315 DFDFE--E---ADIKSRGFGILDVGYRS--KKE-AWAAGGSGIL-LRSTDGGKSWKRDKG------------------A- 366 (398)
T ss_pred cccee--e---cccCCCCcceEEEEEcC--CCc-EEEEECCCcE-EEeCCCCcceeEccc------------------c-
Confidence 10000 0 001 1224588999987 465 8888899987 333444433111110 0
Q ss_pred ccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEE
Q 001538 189 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 227 (1057)
Q Consensus 189 ~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lW 227 (1057)
..-...+..+.|. ++++-+++| .+|.|.-|
T Consensus 367 -------~~~~~~ly~v~f~-~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 367 -------DNIAANLYSVKFF-DDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -------CCCCcceeEEEEc-CCCceEEEe-CCcEEEEe
Confidence 0003567899998 666656655 68888765
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=80.16 E-value=37 Score=42.15 Aligned_cols=117 Identities=9% Similarity=0.164 Sum_probs=77.7
Q ss_pred CeeEEEEE--cCCcEEEEEeCCCcEEEEECCC-------C---------c----eeeeecCCCCEEEEEEe--cCCcEEE
Q 001538 28 PYKNLEFL--QNQGFLISITNDNEIQVWSLES-------R---------S----LACCLKWESNITAFSVI--SGSHFMY 83 (1057)
Q Consensus 28 ~v~~L~F~--~~~~~Lvs~s~d~~I~VWdl~s-------~---------~----~l~tl~~~~~Ita~~~s--p~~~~l~ 83 (1057)
.|.+|... -+...|+.+.+||.|.+|.+++ . + +...+..+...+.+++. ....+++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 36666544 3556899999999999997532 0 0 11222234678888988 8889999
Q ss_pred EEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCC---CC-eEEEEECCCEEEEEEcc
Q 001538 84 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS---GN-RVLIAYENALVILWDVS 158 (1057)
Q Consensus 84 vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~---g~-~lli~~~dG~I~lWdl~ 158 (1057)
+++....|.|+.++....+.. ..+. ..+..-|-+|+|-+.+. |. .|+.++=.|.+.+|++.
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~----~~~s----------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFY----HVPS----------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCceEEEEEEeccccccc----cccc----------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 999999999999987532221 1111 11345688888877542 32 45566677988888873
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=80.10 E-value=1.2e+02 Score=34.72 Aligned_cols=155 Identities=8% Similarity=0.085 Sum_probs=85.2
Q ss_pred CCCeeEEEEEcCCcEEEEEeCCCcEEEEEC-CCCceeeee--cCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCc
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSL-ESRSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 102 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl-~s~~~l~tl--~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~ 102 (1057)
...+..+.+.+++. ++.++..|.+.. .. ..++....+ .....++++.+.+++..+++| +.|.+. . -..+.+.
T Consensus 172 ~g~~~~i~~~~~g~-~v~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~-~-~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YVAVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIR-F-NDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCe-EEEEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEE-E-ccCCCCC
Confidence 34588899999874 455566665532 22 222322223 234688999999998877766 557432 1 1223321
Q ss_pred eeccCcccchhhhhhhcCCC-CCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCC
Q 001538 103 LFQLPYNISADALSEKAGFP-LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 181 (1057)
Q Consensus 103 l~~~~~~i~~~~~~~~~g~~-~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p 181 (1057)
- +... ..+ ......+.++.++| +++ +.++..+|.+ +.....|+--..... +
T Consensus 247 s----W~~~--------~~~~~~~~~~l~~v~~~~--~~~-~~~~G~~G~v-~~S~d~G~tW~~~~~---------~--- 298 (334)
T PRK13684 247 S----WSKP--------IIPEITNGYGYLDLAYRT--PGE-IWAGGGNGTL-LVSKDGGKTWEKDPV---------G--- 298 (334)
T ss_pred c----cccc--------cCCccccccceeeEEEcC--CCC-EEEEcCCCeE-EEeCCCCCCCeECCc---------C---
Confidence 1 1100 011 01123578899998 455 7777788877 455444432111110 0
Q ss_pred CCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeC
Q 001538 182 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 229 (1057)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~ 229 (1057)
. ........+.|. .+++.+++| ..|.|.-|+-
T Consensus 299 ~--------------~~~~~~~~~~~~-~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 299 E--------------EVPSNFYKIVFL-DPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred C--------------CCCcceEEEEEe-CCCceEEEC-CCceEEEecC
Confidence 0 002357788888 666666655 6789888764
No 412
>PHA02713 hypothetical protein; Provisional
Probab=80.04 E-value=13 Score=45.52 Aligned_cols=23 Identities=0% Similarity=0.007 Sum_probs=17.6
Q ss_pred CCcEEEEEecCC--eEEEEeCCCcc
Q 001538 631 AEEVIIVLFKDA--KISIVGGSSEN 653 (1057)
Q Consensus 631 d~~~L~sgt~dg--~i~v~d~~tg~ 653 (1057)
++.+.++|+.|| ++-.||..|.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 477888898888 77778877754
No 413
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.78 E-value=11 Score=40.88 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=20.1
Q ss_pred CCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 631 AEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 631 d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
++-+.++.=.-....+||..||.++...
T Consensus 291 ~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 291 DGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred CCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 4455555556677889999999887655
No 414
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=79.68 E-value=1.1e+02 Score=34.36 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=71.6
Q ss_pred cCCcEEEEcCC-CeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec--C-C---CCEEEEEEec
Q 001538 5 RDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK--W-E---SNITAFSVIS 77 (1057)
Q Consensus 5 ~dG~I~v~g~~-~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~--~-~---~~Ita~~~sp 77 (1057)
..++|+-|... +...++..|.. +.++.-...++.|+++ +..+.+++.+++.....+. . . .......++|
T Consensus 45 ~~~~i~r~~~~~g~~~~~~~p~~--~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p 120 (307)
T COG3386 45 LGGRIHRLDPETGKKRVFPSPGG--FSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP 120 (307)
T ss_pred CCCeEEEecCCcCceEEEECCCC--cccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcC
Confidence 45788888774 55666677654 3555555556678876 4556667776655522221 1 1 2334567778
Q ss_pred CCcEEEEEccCC----------cEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEE
Q 001538 78 GSHFMYIGDENG----------LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 147 (1057)
Q Consensus 78 ~~~~l~vG~~~G----------~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~ 147 (1057)
++.+.+ |+... .-+||.+|+...... ....+..--.+|+|+| +++.|..+-
T Consensus 121 dG~~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~----------------l~~~~~~~~NGla~Sp--Dg~tly~aD 181 (307)
T COG3386 121 DGRIWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVR----------------LLDDDLTIPNGLAFSP--DGKTLYVAD 181 (307)
T ss_pred CCCEEE-eCCCccccCccccCCcceEEEEcCCCCEEE----------------eecCcEEecCceEECC--CCCEEEEEe
Confidence 866544 44431 014555554221111 0001112236899999 687666665
Q ss_pred CC-CEEEEEEcc
Q 001538 148 EN-ALVILWDVS 158 (1057)
Q Consensus 148 ~d-G~I~lWdl~ 158 (1057)
.. +.|.-|++.
T Consensus 182 T~~~~i~r~~~d 193 (307)
T COG3386 182 TPANRIHRYDLD 193 (307)
T ss_pred CCCCeEEEEecC
Confidence 54 666666664
No 415
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.64 E-value=7.9 Score=41.25 Aligned_cols=75 Identities=20% Similarity=0.135 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEee----cCC-------CCCCCeEEEEEeeccCcccccCCCCCC
Q 001538 554 SPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTD----DIS-------GSSSPIISMTWTEFKNTHSLAKNPNHS 622 (1057)
Q Consensus 554 ~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~----~~~-------g~~~~V~sl~f~~~~~~~~~~~~~~~~ 622 (1057)
.++..|. .++.+|.+-+.+|.++|||+...++++... .+. .....|+++...
T Consensus 13 s~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt--------------- 75 (219)
T PF07569_consen 13 SPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT--------------- 75 (219)
T ss_pred CceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc---------------
Confidence 3455444 467789999999999999999988876531 111 133455555554
Q ss_pred CCcCCCCCCCcEEEEEecCCeEEEEeCCCcc
Q 001538 623 EREVPVNPAEEVIIVLFKDAKISIVGGSSEN 653 (1057)
Q Consensus 623 ~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~ 653 (1057)
..|.-|++-+ +|..+.||..-+.
T Consensus 76 -------~~G~PiV~ls-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 76 -------SNGVPIVTLS-NGDSYSYSPDLGC 98 (219)
T ss_pred -------CCCCEEEEEe-CCCEEEeccccce
Confidence 3344466554 4788999866543
No 416
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.61 E-value=7.6 Score=39.71 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEeCCCCe
Q 001538 555 PVRALQFTSSGAKLAVGFECGRVAVLDMNLLS 586 (1057)
Q Consensus 555 ~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~ 586 (1057)
.-.+|+||.|| .||++..+. |.|.|..++.
T Consensus 6 ~~~~l~WS~Dg-~laV~t~~~-v~IL~~~~P~ 35 (173)
T PF12657_consen 6 CPNALAWSEDG-QLAVATGES-VHILDPQTPN 35 (173)
T ss_pred CCcCeeECCCC-CEEEEcCCe-EEEEeccCCc
Confidence 34789999999 678888877 7778666655
No 417
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.09 E-value=25 Score=41.25 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=54.3
Q ss_pred CeEEEEeCcCCCCCeEEEEECCCEEEEEE---------ccCCeE--EEEecCCcccccCCccCCCCCCCCCcccCCCCCC
Q 001538 128 PVVGVLPHPNSSGNRVLIAYENALVILWD---------VSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 196 (1057)
Q Consensus 128 ~V~sI~~sP~d~g~~lli~~~dG~I~lWd---------l~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 196 (1057)
.|..|..+| .|..++.++.+|.+..+= +++|+. .++..+-+-+ +. ..
T Consensus 105 eV~~vl~s~--~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~----~f--------------ts-- 162 (741)
T KOG4460|consen 105 EVYQVLLSP--TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER----FF--------------TS-- 162 (741)
T ss_pred EEEEEEecC--CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce----ee--------------cc--
Confidence 477889999 699999999999885543 234432 2211110000 00 00
Q ss_pred CCCCCeEEEEEecCCC---CEEEEEEcCCcEEEEeCCCCC
Q 001538 197 PEEKEISALCWASSSG---SILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 197 ~~~~~Vtsl~ws~pdG---~~latg~~DG~I~lWd~~~~~ 233 (1057)
...-.+.++.|| |+. .+++.-..|++|++||+....
T Consensus 163 s~~ltl~Qa~WH-P~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 163 STSLTLKQAAWH-PSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred CCceeeeecccc-CCccCCceEEEEecCcEEEEEecCCcc
Confidence 013467799999 876 688888899999999997754
No 418
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=77.45 E-value=1.8e+02 Score=35.49 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=91.0
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeeecCC-----CCEEEEEEecCCcEEEEEcc------CCcEEEEEEeCCCCceeccC
Q 001538 39 GFLISITNDNEIQVWSLESRSLACCLKWE-----SNITAFSVISGSHFMYIGDE------NGLMSVIKYDADEGKLFQLP 107 (1057)
Q Consensus 39 ~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~-----~~Ita~~~sp~~~~l~vG~~------~G~v~v~~~d~~~~~l~~~~ 107 (1057)
+.++.++.|+.|.-.|.++|+++=..... ..+++.-+. ....+++|.. +| .|..+|..+|++...-
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G--~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRG--YVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCc--EEEEEECCCCceeEec
Confidence 35777788899999999999886444321 122221111 2346777654 56 6778888888776333
Q ss_pred cccchhhh-----hh-hcCCC----------CCCCCCeE-EEEeCcCCCCCeEEEEECC-----C-----------EEEE
Q 001538 108 YNISADAL-----SE-KAGFP----------LLSHQPVV-GVLPHPNSSGNRVLIAYEN-----A-----------LVIL 154 (1057)
Q Consensus 108 ~~i~~~~~-----~~-~~g~~----------~~~~~~V~-sI~~sP~d~g~~lli~~~d-----G-----------~I~l 154 (1057)
+.++..-. .+ ..+.+ +.....|. .+++.|. -.+|.++..+ + .|.-
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~--~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPE--TNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCC--CCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 33332100 00 00000 00122332 4466663 3345555432 2 5667
Q ss_pred EEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCC---EEEEEEcCCcEEEEeCCC
Q 001538 155 WDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS---ILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~---~latg~~DG~I~lWd~~~ 231 (1057)
-|+++|+++-+|+.. .|.+. +-+....+-+ +... .||. .|+.+..+|.+.+.|-.+
T Consensus 276 ld~~TG~~~W~~Q~~----~~D~w--------------D~d~~~~p~l--~d~~-~~G~~~~~v~~~~K~G~~~vlDr~t 334 (527)
T TIGR03075 276 RDPDTGKIKWHYQTT----PHDEW--------------DYDGVNEMIL--FDLK-KDGKPRKLLAHADRNGFFYVLDRTN 334 (527)
T ss_pred EccccCCEEEeeeCC----CCCCc--------------cccCCCCcEE--EEec-cCCcEEEEEEEeCCCceEEEEECCC
Confidence 899999999887651 00000 0000001222 2222 4676 677899999999999988
Q ss_pred CC
Q 001538 232 TA 233 (1057)
Q Consensus 232 ~~ 233 (1057)
|.
T Consensus 335 G~ 336 (527)
T TIGR03075 335 GK 336 (527)
T ss_pred Cc
Confidence 74
No 419
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.10 E-value=1.7e+02 Score=34.46 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=32.0
Q ss_pred CccccCCcEEEEcCCC-----eEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEE
Q 001538 1 MCLCRDGRIKVIGGDG-----IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQV 52 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~-----~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~V 52 (1057)
+||+.+|.++||.... -..+++..-+.||..|+.- ++++.+.+..+-|
T Consensus 41 ivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G----~F~s~~~~~~LaV 93 (418)
T PF14727_consen 41 IVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECG----KFVSGSEDLQLAV 93 (418)
T ss_pred EEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEec----cccCCCCcceEEE
Confidence 4799999999996532 2366777778899888762 3444444444444
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=74.62 E-value=7.4 Score=29.69 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=26.0
Q ss_pred CEEEEEEecCCC---eEEEEecCccEEEEEecC
Q 001538 488 PVSTLSFCFINS---SLAVGNEFGLVYIYNLNG 517 (1057)
Q Consensus 488 ~V~~v~fspd~~---~Lavg~~dG~V~l~~~~~ 517 (1057)
+|.++.|||+.. +|+.+-..|.|.|+|++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 789999998666 888888889999999975
No 421
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=74.61 E-value=1.3e+02 Score=33.69 Aligned_cols=150 Identities=11% Similarity=0.021 Sum_probs=71.7
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
..+++++++.+..-...+-||.......+... ....+|.++.|.|++...+++ ..|.|+.=+.....
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-----------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~- 218 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-----------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG- 218 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE-
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEcc-----------CccceehhceecCCCCEEEEe-CCcEEEEccCCCCc-
Confidence 46777777776555556788876543322211 123589999999998766555 77777665521110
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP 600 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~ 600 (1057)
..+.. ++.......-.+..|++.++....|+|+... | +....+++-=..........+-
T Consensus 219 --------------~~w~~-----~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l-~~S~DgGktW~~~~~~~~~~~n 277 (302)
T PF14870_consen 219 --------------ETWSE-----PIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-L-LVSTDGGKTWQKDRVGENVPSN 277 (302)
T ss_dssp --------------EEE--------B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS-
T ss_pred --------------ccccc-----ccCCcccCceeeEEEEecCCCCEEEEeCCcc-E-EEeCCCCccceECccccCCCCc
Confidence 00000 0000111223478899999988878766653 3 3344344321122222234556
Q ss_pred eEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEE
Q 001538 601 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 647 (1057)
Q Consensus 601 V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~ 647 (1057)
+..+.|.. .+.-++.+.+|.|+-|
T Consensus 278 ~~~i~f~~-----------------------~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 278 LYRIVFVN-----------------------PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp --EEEEEE-----------------------TTEEEEE-STTEEEEE
T ss_pred eEEEEEcC-----------------------CCceEEECCCcEEEEe
Confidence 78888862 2446667888888766
No 422
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.52 E-value=1.3e+02 Score=35.29 Aligned_cols=151 Identities=10% Similarity=0.059 Sum_probs=78.7
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 520 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~ 520 (1057)
..+++.+++.|..-..++-||-.....+++ +. +....++++.|.+++..++++ ..|.+.. .-.....
T Consensus 246 ~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~----------~~-~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~ 312 (398)
T PLN00033 246 RSPDGDYVAVSSRGNFYLTWEPGQPYWQPH----------NR-ASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLT 312 (398)
T ss_pred EcCCCCEEEEECCccEEEecCCCCcceEEe----------cC-CCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCc
Confidence 345677777766554556666543211111 11 223478999999998877666 5566433 2211110
Q ss_pred ccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEee-cCCCCCC
Q 001538 521 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTD-DISGSSS 599 (1057)
Q Consensus 521 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~-~~~g~~~ 599 (1057)
.... .+..+ ........++++.|.+++..+++ +.+|.+.... ..++- +... ...+...
T Consensus 313 ~~~~--------~f~~~----------~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~t-W~~~~~~~~~~~ 371 (398)
T PLN00033 313 EEDF--------DFEEA----------DIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKS-WKRDKGADNIAA 371 (398)
T ss_pred cccc--------ceeec----------ccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcc-eeEccccCCCCc
Confidence 0000 00000 00112245899999998865554 5567555543 33322 2221 1123456
Q ss_pred CeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEe
Q 001538 600 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 648 (1057)
Q Consensus 600 ~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d 648 (1057)
....+.|. . ....++.+.+|.|..|.
T Consensus 372 ~ly~v~f~----------------------~-~~~g~~~G~~G~il~~~ 397 (398)
T PLN00033 372 NLYSVKFF----------------------D-DKKGFVLGNDGVLLRYL 397 (398)
T ss_pred ceeEEEEc----------------------C-CCceEEEeCCcEEEEeC
Confidence 67788875 2 24467778889887763
No 423
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.94 E-value=4.9 Score=49.54 Aligned_cols=124 Identities=11% Similarity=0.129 Sum_probs=68.4
Q ss_pred CeeEEEEEcCC-cEEEEEeCCCcEEEEECC--CCceeeee-----cCC----CCEEEEEEecCCcEEEEEccCCcEEEEE
Q 001538 28 PYKNLEFLQNQ-GFLISITNDNEIQVWSLE--SRSLACCL-----KWE----SNITAFSVISGSHFMYIGDENGLMSVIK 95 (1057)
Q Consensus 28 ~v~~L~F~~~~-~~Lvs~s~d~~I~VWdl~--s~~~l~tl-----~~~----~~Ita~~~sp~~~~l~vG~~~G~v~v~~ 95 (1057)
.|-.|+|.... ..+. ..=|.+.||+++ .|++...+ ... ..|.-+-+.+..-++..|..+|+|++++
T Consensus 134 ~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~ 211 (1283)
T KOG1916|consen 134 GVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLN 211 (1283)
T ss_pred CcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEee
Confidence 45566664322 1111 223678899976 35543222 111 2333334445667889999999999999
Q ss_pred EeCCCCceecc--CcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEcc-CCeEEE
Q 001538 96 YDADEGKLFQL--PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS-EAQIIF 164 (1057)
Q Consensus 96 ~d~~~~~l~~~--~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~-~~~~~~ 164 (1057)
++.....+... ...+..-+. +..--.|.+ .+| ||+.++.++.||.++.|-+- +|+...
T Consensus 212 ~~ra~~~l~rsHs~~~~d~a~~-------~~g~~~l~~--lSp--DGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 212 INRALRSLFRSHSQRVTDMAFF-------AEGVLKLAS--LSP--DGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred echHHHHHHHhcCCCcccHHHH-------hhchhhhee--eCC--CCcEEEEeecCCccceeeeeeeccccH
Confidence 98754333211 011111011 000111222 788 79999999999999998763 444443
No 424
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=72.26 E-value=77 Score=40.56 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=63.5
Q ss_pred CCCCeEEEEEcCCC------CEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCc
Q 001538 552 VNSPVRALQFTSSG------AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSERE 625 (1057)
Q Consensus 552 h~~~ItsLa~S~~g------~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~ 625 (1057)
....|.|+++.+++ +++|.|+.|++++++.+.-...+..+. ..+-+.++.++.+-.+...
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls-~q~l~~~~~s~~iv~~~~~------------- 646 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLS-VQGLSSPPESLCIVEMEAT------------- 646 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcc-ccccCCCccceEEEEeccc-------------
Confidence 45678999999886 689999999999999986444443332 2346777788877654332
Q ss_pred CCCCCCCcEEEEEecCCeEEEE--eCCCcceeecC
Q 001538 626 VPVNPAEEVIIVLFKDAKISIV--GGSSENMISSS 658 (1057)
Q Consensus 626 ~~~~~d~~~L~sgt~dg~i~v~--d~~tg~~i~~~ 658 (1057)
.--+++--+|.+|-..|.+.-. |..+|++.-+.
T Consensus 647 ~~~~~~~L~l~~GL~NGvllR~~id~v~G~l~d~r 681 (1205)
T KOG1898|consen 647 GGTDVAQLYLLIGLRNGVLLRFVIDTVTGQLLDIR 681 (1205)
T ss_pred CCccceeEEEEecccccEEEEEEecccccceeeeh
Confidence 0001345678889999988755 67788665443
No 425
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=71.86 E-value=37 Score=41.41 Aligned_cols=114 Identities=11% Similarity=0.183 Sum_probs=67.6
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeeecCC--CCEEE---E-----EEecCCcEEEEEccCCcEEEEEEeCCCCceeccCc
Q 001538 39 GFLISITNDNEIQVWSLESRSLACCLKWE--SNITA---F-----SVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPY 108 (1057)
Q Consensus 39 ~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~--~~Ita---~-----~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~ 108 (1057)
++|+.++.++.|.-.|..+|+++=.+... ..+.. . .+.-....+|+++.+| +|+.+|..+|++. +
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg--~l~ALDa~TGk~~---W 144 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA--RLVALDAKTGKVV---W 144 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCC--EEEEEECCCCCEE---e
Confidence 47777788888988999998876554322 11211 1 0112346788999999 8899999888776 2
Q ss_pred ccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC------CCEEEEEEccCCeEEEEecC
Q 001538 109 NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVGGG 168 (1057)
Q Consensus 109 ~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~------dG~I~lWdl~~~~~~~~~~~ 168 (1057)
..... .... -..+.-+|.-.+.+|+++.. +|.|.-+|..+|+.+-.+..
T Consensus 145 ~~~~~------~~~~-----~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 145 SKKNG------DYKA-----GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ecccc------cccc-----cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 11100 0000 00111122111224666653 68899999999999876553
No 426
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=71.76 E-value=1.3e+02 Score=38.37 Aligned_cols=189 Identities=16% Similarity=0.176 Sum_probs=99.0
Q ss_pred EEcCC--cEEEEEeCCCcEEEEECC-CCceeeee--c------CCCCEEEEEEe--cCCcEEEEEcc---CCcEEEEEEe
Q 001538 34 FLQNQ--GFLISITNDNEIQVWSLE-SRSLACCL--K------WESNITAFSVI--SGSHFMYIGDE---NGLMSVIKYD 97 (1057)
Q Consensus 34 F~~~~--~~Lvs~s~d~~I~VWdl~-s~~~l~tl--~------~~~~Ita~~~s--p~~~~l~vG~~---~G~v~v~~~d 97 (1057)
|.|.. .-++++...|.|++|-.. +.+...+. . ....|+..++. ..+..+++.+. .+.|+++.+.
T Consensus 56 ~HP~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~ 135 (753)
T PF11635_consen 56 FHPGPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQ 135 (753)
T ss_pred cCCCCCceEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEE
Confidence 44533 458888999999999883 33322111 1 33566655554 45555555444 4778877654
Q ss_pred CCCC--ceeccCcccchhhhhhhcCC--------------CCCCCCCeEEEEeCc----CCCCCeEEEEEC-----CCEE
Q 001538 98 ADEG--KLFQLPYNISADALSEKAGF--------------PLLSHQPVVGVLPHP----NSSGNRVLIAYE-----NALV 152 (1057)
Q Consensus 98 ~~~~--~l~~~~~~i~~~~~~~~~g~--------------~~~~~~~V~sI~~sP----~d~g~~lli~~~-----dG~I 152 (1057)
.+=+ +...-+...|.......... +......+++|.|=| ++....++++|+ ...|
T Consensus 136 I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI 215 (753)
T PF11635_consen 136 IDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSII 215 (753)
T ss_pred EeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEE
Confidence 3221 00000100011100000000 011334677777766 555556888877 4568
Q ss_pred EEEEccCCe-EEEEecCCcccccCCccCCCCCCC-CCccc-C----CCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEE
Q 001538 153 ILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGD-STFLE-G----ISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 225 (1057)
Q Consensus 153 ~lWdl~~~~-~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~-~----~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~ 225 (1057)
.-|.+.+.. .++..- +. +. .... ++... . .-++....+.|.+++-. .-+..|+..++||+|.
T Consensus 216 ~RweL~~~~~~lh~~F----~q---l~---s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~-~~~~~v~~~~~DGsI~ 284 (753)
T PF11635_consen 216 ERWELREEQQPLHPAF----QQ---LG---SKKNSSSEPPPTYRLRRLDDITLNKRVVSITSP-ELDIVVAFAFSDGSIE 284 (753)
T ss_pred EEEEEEccCcccchhh----hh---cC---CCCcCCCCCCCceeEEEecccccCCeEEEEEec-ccCcEEEEEEcCCeEE
Confidence 899987653 222111 00 00 0000 00000 0 01222346788899887 7788999999999999
Q ss_pred EEeCCCCC
Q 001538 226 LWNTSTTA 233 (1057)
Q Consensus 226 lWd~~~~~ 233 (1057)
+.|-.+-.
T Consensus 285 ~~dr~t~~ 292 (753)
T PF11635_consen 285 FRDRNTMK 292 (753)
T ss_pred EEecCcch
Confidence 99987753
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=70.69 E-value=37 Score=43.13 Aligned_cols=121 Identities=16% Similarity=0.195 Sum_probs=69.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeeecCCCCE-------EE--EEE----------------ecCCcEEEEEccCCcEE
Q 001538 38 QGFLISITNDNEIQVWSLESRSLACCLKWESNI-------TA--FSV----------------ISGSHFMYIGDENGLMS 92 (1057)
Q Consensus 38 ~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~I-------ta--~~~----------------sp~~~~l~vG~~~G~v~ 92 (1057)
++.|..++.++.|.-.|..+|+.+=.+.....+ +| +++ ......+|+++.|| +
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg--~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA--R 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC--e
Confidence 346777788888888888888876554322211 11 111 12345899999999 8
Q ss_pred EEEEeCCCCceeccCcc----cchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC----------CCEEEEEEcc
Q 001538 93 VIKYDADEGKLFQLPYN----ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVS 158 (1057)
Q Consensus 93 v~~~d~~~~~l~~~~~~----i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~----------dG~I~lWdl~ 158 (1057)
|+.+|.++|++.. .|. +.+. . ++..... .-..+.-.|.-.+..|+++.. +|.|+-+|+.
T Consensus 272 LiALDA~TGk~~W-~fg~~G~vdl~---~--~~g~~~~-g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~ 344 (764)
T TIGR03074 272 LIALDADTGKLCE-DFGNNGTVDLT---A--GMGTTPP-GYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVN 344 (764)
T ss_pred EEEEECCCCCEEE-EecCCCceeee---c--ccCcCCC-cccccccCCEEECCEEEEEecccccccccCCCcEEEEEECC
Confidence 8999998887661 111 1110 0 0110000 011222233212335777643 6899999999
Q ss_pred CCeEEEEec
Q 001538 159 EAQIIFVGG 167 (1057)
Q Consensus 159 ~~~~~~~~~ 167 (1057)
+|+++-.+.
T Consensus 345 TGkl~W~~~ 353 (764)
T TIGR03074 345 TGALVWAWD 353 (764)
T ss_pred CCcEeeEEe
Confidence 999987765
No 428
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=70.53 E-value=9.8 Score=43.78 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=45.8
Q ss_pred CCCeEEEEEC---------CCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEec
Q 001538 139 SGNRVLIAYE---------NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 209 (1057)
Q Consensus 139 ~g~~lli~~~---------dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~ 209 (1057)
+++++|+.+. .+.+.|||+.+++....... ...+..+.|+
T Consensus 3 d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~------------------------------~~~~~~~~~s- 51 (353)
T PF00930_consen 3 DGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP------------------------------PPKLQDAKWS- 51 (353)
T ss_dssp TSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E------------------------------ETTBSEEEE--
T ss_pred CCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC------------------------------ccccccceee-
Confidence 5777777433 45788999999877643322 3567889999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCC
Q 001538 210 SSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 210 pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
|||+.||-.. ++.|.+++..++
T Consensus 52 P~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 52 PDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp SSSTEEEEEE-TTEEEEESSTTS
T ss_pred cCCCeeEEEe-cCceEEEECCCC
Confidence 9999999886 689999988765
No 429
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.19 E-value=12 Score=45.77 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=26.3
Q ss_pred CCcEEEEEecCCeEEEEeCCCcceeecCcc
Q 001538 631 AEEVIIVLFKDAKISIVGGSSENMISSSPW 660 (1057)
Q Consensus 631 d~~~L~sgt~dg~i~v~d~~tg~~i~~~~i 660 (1057)
+..+|++.+.|+++++||+.+++++.+..+
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 467899999999999999999999877644
No 430
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=69.95 E-value=1.2e+02 Score=33.53 Aligned_cols=120 Identities=20% Similarity=0.211 Sum_probs=63.8
Q ss_pred cEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEe------cCccEEEEEecCCCCccceeeeec
Q 001538 456 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN------EFGLVYIYNLNGSLDAKNFLFVLE 529 (1057)
Q Consensus 456 tVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~------~dG~V~l~~~~~~~~~~~~~~~~~ 529 (1057)
.|++||........+ .. .+ .+.|+++.|..+.+.+++|. ....+..|++.......-
T Consensus 17 ~lC~yd~~~~qW~~~---g~-----~i---~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~------ 79 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSP---GN-----GI---SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL------ 79 (281)
T ss_pred EEEEEECCCCEeecC---CC-----Cc---eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec------
Confidence 488999877653211 11 12 24899999997777777774 345677888876543100
Q ss_pred CCCceEEeccCCcceeeEEEeeCCCCeEEEEEcC-C-CCEEEEEe-CCce--EEEEeCCCCeEEEEeecCCCCCCCeEEE
Q 001538 530 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-S-GAKLAVGF-ECGR--VAVLDMNLLSVLFFTDDISGSSSPIISM 604 (1057)
Q Consensus 530 ~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~-~-g~~lA~G~-~dG~--V~vwDi~~~~~l~~~~~~~g~~~~V~sl 604 (1057)
..+ .-..-.++|+++.+.. | .++.+.|. .+|. |.-||=..-.-+-. ...+....|..|
T Consensus 80 ----------~~~-----~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~--~~~~~~t~I~~l 142 (281)
T PF12768_consen 80 ----------GGG-----SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS--DILGSGTTIRGL 142 (281)
T ss_pred ----------CCc-----ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc--cccCCCCEEEEE
Confidence 000 0012357888887743 2 23554544 4444 45554332222211 011235678888
Q ss_pred EEeec
Q 001538 605 TWTEF 609 (1057)
Q Consensus 605 ~f~~~ 609 (1057)
++-+.
T Consensus 143 ~~~~l 147 (281)
T PF12768_consen 143 QVLPL 147 (281)
T ss_pred EEEec
Confidence 87644
No 431
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=69.70 E-value=56 Score=37.61 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=75.5
Q ss_pred CeEEEEEcCCCCCeeEE-----EEEcCCcEEE-EEeCCC--cEEEEECCCCceeeeecCCCC-EEEEEEecCCcEEEEEc
Q 001538 16 GIEGLLISPSQLPYKNL-----EFLQNQGFLI-SITNDN--EIQVWSLESRSLACCLKWESN-ITAFSVISGSHFMYIGD 86 (1057)
Q Consensus 16 ~~e~~~~~~~~~~v~~L-----~F~~~~~~Lv-s~s~d~--~I~VWdl~s~~~l~tl~~~~~-Ita~~~sp~~~~l~vG~ 86 (1057)
|.+++-..+.......+ +|.++|..|+ +++.|| .+.+.||.+++...-...++. .-...++++.+.++--.
T Consensus 20 G~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 20 GHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE
T ss_pred CceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE
Confidence 45555545544433333 4677775544 554454 577778888887543333321 11244567777764333
Q ss_pred cCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC------------------
Q 001538 87 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------------------ 148 (1057)
Q Consensus 87 ~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~------------------ 148 (1057)
.+. +|+.+|.+..+.. .-|.++..+ +-...|.+.++++ ++++.+
T Consensus 100 ~~~--~l~~vdL~T~e~~-~vy~~p~~~--------------~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 100 NGR--SLRRVDLDTLEER-VVYEVPDDW--------------KGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp TTT--EEEEEETTT--EE-EEEE--TTE--------------EEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHH
T ss_pred CCC--eEEEEECCcCcEE-EEEECCccc--------------ccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHH
Confidence 334 5777777654432 126666443 2334554433555 333322
Q ss_pred -----CCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcC--
Q 001538 149 -----NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-- 221 (1057)
Q Consensus 149 -----dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~D-- 221 (1057)
.+.|.--|+.+|+....+.- ...+-.+-|++.|...|+=+++-
T Consensus 162 ~~a~p~~~i~~idl~tG~~~~v~~~------------------------------~~wlgH~~fsP~dp~li~fCHEGpw 211 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGERKVVFED------------------------------TDWLGHVQFSPTDPTLIMFCHEGPW 211 (386)
T ss_dssp HHC---EEEEEEETTT--EEEEEEE------------------------------SS-EEEEEEETTEEEEEEEEE-S-T
T ss_pred HhhCCCceEEEEECCCCceeEEEec------------------------------CccccCcccCCCCCCEEEEeccCCc
Confidence 23455557777766544442 45667788885566666666652
Q ss_pred -C-cEEEEeCCC
Q 001538 222 -G-DILLWNTST 231 (1057)
Q Consensus 222 -G-~I~lWd~~~ 231 (1057)
. +=++|-+.+
T Consensus 212 ~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 212 DLVDQRIWTINT 223 (386)
T ss_dssp TTSS-SEEEEET
T ss_pred ceeceEEEEEEc
Confidence 2 235676654
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=69.38 E-value=4.6 Score=49.80 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=49.0
Q ss_pred CEEEEEEe---cCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCC
Q 001538 488 PVSTLSFC---FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS 564 (1057)
Q Consensus 488 ~V~~v~fs---pd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~ 564 (1057)
.+.-|.|| ++..+++.+..+|+|++..+.+.... .+.+++.+.+-.-....||.- + . ..|||
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~---l~rsHs~~~~d~a~~~~g~~~---l-------~--~lSpD 246 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS---LFRSHSQRVTDMAFFAEGVLK---L-------A--SLSPD 246 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHHH---HHHhcCCCcccHHHHhhchhh---h-------e--eeCCC
Confidence 33555555 46778889999999999887654321 111111111111111333331 1 1 17999
Q ss_pred CCEEEEEeCCceEEEEeC
Q 001538 565 GAKLAVGFECGRVAVLDM 582 (1057)
Q Consensus 565 g~~lA~G~~dG~V~vwDi 582 (1057)
|..||.+..||.|+.|-+
T Consensus 247 Gtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 247 GTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred CcEEEEeecCCccceeee
Confidence 999999999999999987
No 433
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=68.01 E-value=1.1e+02 Score=35.84 Aligned_cols=71 Identities=15% Similarity=0.311 Sum_probs=47.2
Q ss_pred eEEEEeCcCCCCCeEEEEECC-C----EEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeE
Q 001538 129 VVGVLPHPNSSGNRVLIAYEN-A----LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 203 (1057)
Q Consensus 129 V~sI~~sP~d~g~~lli~~~d-G----~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vt 203 (1057)
+....++| +|++||.+.+. | .++++|+.+|+.+..... ...-.
T Consensus 126 ~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~------------------------------~~~~~ 173 (414)
T PF02897_consen 126 LGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE------------------------------NPKFS 173 (414)
T ss_dssp EEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE------------------------------EEESE
T ss_pred eeeeeECC--CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc------------------------------ccccc
Confidence 34678899 79999887543 3 799999999987643211 11223
Q ss_pred EEEEecCCCCEEEEEEcCC-----------cEEEEeCCCC
Q 001538 204 ALCWASSSGSILAVGYIDG-----------DILLWNTSTT 232 (1057)
Q Consensus 204 sl~ws~pdG~~latg~~DG-----------~I~lWd~~~~ 232 (1057)
.++|. +||+.|+-...|. .|++|.+.+.
T Consensus 174 ~~~W~-~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 174 SVSWS-DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp EEEEC-TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred eEEEe-CCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence 49999 9988765554433 2777777554
No 434
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.73 E-value=3.5e+02 Score=34.61 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=40.7
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeeecCCCCEE-------------EEEEec--CCcEEEEEcc----------CCcEEE
Q 001538 39 GFLISITNDNEIQVWSLESRSLACCLKWESNIT-------------AFSVIS--GSHFMYIGDE----------NGLMSV 93 (1057)
Q Consensus 39 ~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~It-------------a~~~sp--~~~~l~vG~~----------~G~v~v 93 (1057)
++++..+.|+.|.-.|.++|+.+-.+..++.|- .+.-.| ..+.+++|.. +| .|
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G--~I 338 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSG--VI 338 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCc--EE
Confidence 467778888888888988888876554332220 011111 2456777743 57 67
Q ss_pred EEEeCCCCcee
Q 001538 94 IKYDADEGKLF 104 (1057)
Q Consensus 94 ~~~d~~~~~l~ 104 (1057)
..||..+|++.
T Consensus 339 ~A~Da~TGkl~ 349 (764)
T TIGR03074 339 RAFDVNTGALV 349 (764)
T ss_pred EEEECCCCcEe
Confidence 77888888776
No 435
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=66.67 E-value=24 Score=43.27 Aligned_cols=96 Identities=13% Similarity=-0.090 Sum_probs=50.0
Q ss_pred cCCCeEEEEecCccEEEEEecCCCCccc-eeeeecCCCceEEeccCCcceeeE--EEeeCCCCeEEEEEcC----CCCEE
Q 001538 496 FINSSLAVGNEFGLVYIYNLNGSLDAKN-FLFVLETKSEVHALPEGKISLCRA--VFSLVNSPVRALQFTS----SGAKL 568 (1057)
Q Consensus 496 pd~~~Lavg~~dG~V~l~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~g~~~~~--~~~~h~~~ItsLa~S~----~g~~l 568 (1057)
++...++++..||.+...+.......+. ........... .+.-.|+.+.. .-....+.+.+++++. +..+|
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 233 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSW--LRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFL 233 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHH--HHCCTTTS-TT---SSSS---EEEEEE-----ETTTEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCch--hhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEE
Confidence 5778999999999998888765221110 00000000000 00000111100 0011234456666666 66799
Q ss_pred EEEeCCceEEEEeCCCCeEEEEeec
Q 001538 569 AVGFECGRVAVLDMNLLSVLFFTDD 593 (1057)
Q Consensus 569 A~G~~dG~V~vwDi~~~~~l~~~~~ 593 (1057)
++-+.|++|+|||+.++.+++....
T Consensus 234 ~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 234 FTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EEEETTSEEEEEETTTTCEEEEEET
T ss_pred EEEeCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999999999988766
No 436
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=65.99 E-value=21 Score=26.40 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=27.1
Q ss_pred cCCcEEEEEe-CCCcEEEEECCCCceeeeecCCCCEEEEE
Q 001538 36 QNQGFLISIT-NDNEIQVWSLESRSLACCLKWESNITAFS 74 (1057)
Q Consensus 36 ~~~~~Lvs~s-~d~~I~VWdl~s~~~l~tl~~~~~Ita~~ 74 (1057)
|++++|++++ .+++|.++|..+++.+..+.....-..++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 4566677665 57899999999999888776543333333
No 437
>PRK13615 lipoprotein LpqB; Provisional
Probab=65.43 E-value=2.9e+02 Score=33.89 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=65.7
Q ss_pred eEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcc
Q 001538 30 KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYN 109 (1057)
Q Consensus 30 ~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~ 109 (1057)
.+++.++++..++..+.++.+.+|....... .+.....++.=+|++++ |+.+.......++..... .+... .-.
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~--~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~-~G~~~--~v~ 410 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDAV--LLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGP-DGVGH--PVA 410 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcce--eeccCCccccCcCcCCC-CEEEEeCCCceEEEEecC-CCceE--Eee
Confidence 6778899998888887788888886652211 11122347777788777 666655444445554432 23222 112
Q ss_pred cchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC---CCEEEEEEc
Q 001538 110 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDV 157 (1057)
Q Consensus 110 i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~---dG~I~lWdl 157 (1057)
++|. ...+|..+..++ +|.|++...+ .+.|.+--+
T Consensus 411 v~~~-----------~~~~I~~lrvSr--DG~R~Avi~~~~g~~~V~va~V 448 (557)
T PRK13615 411 VSWT-----------ATGRVVSLEVAR--DGARVLVQLETGAGPQLLVASI 448 (557)
T ss_pred cccc-----------CCCeeEEEEeCC--CccEEEEEEecCCCCEEEEEEE
Confidence 2221 235799999999 7999888754 345544433
No 438
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=65.35 E-value=1.6e+02 Score=34.14 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=74.2
Q ss_pred eeEEEEE--c-CC-cEEEEEeCCCcEEEEECC---CC----ceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEe
Q 001538 29 YKNLEFL--Q-NQ-GFLISITNDNEIQVWSLE---SR----SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYD 97 (1057)
Q Consensus 29 v~~L~F~--~-~~-~~Lvs~s~d~~I~VWdl~---s~----~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d 97 (1057)
+..+++- + ++ -|.+..+.+|.++.|-|. .+ +++..+...+.+..|.++....+||+|-++- =||.|+
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~--GIW~y~ 235 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDV--GIWRYD 235 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTT--EEEEEE
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCcc--EEEEEe
Confidence 4556664 3 23 366777788989888874 33 3467777788999999999999999999997 789987
Q ss_pred CCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEEC--CCEEEEEEccC-CeEEEEe
Q 001538 98 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSE-AQIIFVG 166 (1057)
Q Consensus 98 ~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~--dG~I~lWdl~~-~~~~~~~ 166 (1057)
.+-..-.. +..+.. . ....-...|-.|+.-...+|+-.|++++ +++..+|+... ...+..|
T Consensus 236 Aep~~~~~-~~~v~~-----~--~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 236 AEPEGGND-RTLVAS-----A--DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp SSCCC-S---EEEEE-----B--SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred cCCCCCCc-ceeeec-----c--cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 65211110 011100 0 0011134677777754334554555555 45888999874 3444433
No 439
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=64.51 E-value=1.7e+02 Score=36.11 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=37.5
Q ss_pred CCCcEEEEEeCC-C-----cEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCcc-----EE
Q 001538 443 SVDRVYLAGYHD-G-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL-----VY 511 (1057)
Q Consensus 443 ~~~~~liTG~~D-G-----tVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~-----V~ 511 (1057)
-.+.++++|+.| | +|-.||........+..+ +...+...+..+ ++...|+|+.||. |-
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-------~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-------NTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCc-------cCccccceeEEE----CCEEEEEeccccccccccEE
Confidence 345799999999 3 455677766653322222 111222233322 6778899999975 45
Q ss_pred EEEecCC
Q 001538 512 IYNLNGS 518 (1057)
Q Consensus 512 l~~~~~~ 518 (1057)
.||..++
T Consensus 400 ~YDp~~~ 406 (571)
T KOG4441|consen 400 CYDPVTN 406 (571)
T ss_pred EecCCCC
Confidence 5555444
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=64.46 E-value=2.6e+02 Score=32.30 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=38.7
Q ss_pred CCCCCeeEEEEEcCCcEEEEEe-----------CC-CcEEEEECCC--Ccee--eeec-CCCCEEEEEEecCCcEEEEEc
Q 001538 24 PSQLPYKNLEFLQNQGFLISIT-----------ND-NEIQVWSLES--RSLA--CCLK-WESNITAFSVISGSHFMYIGD 86 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s-----------~d-~~I~VWdl~s--~~~l--~tl~-~~~~Ita~~~sp~~~~l~vG~ 86 (1057)
|.-..-..|+|.+++..+|+-. .. +.|.+++-.. ++.- ..+. .-...+.+++.+++ ||++.
T Consensus 11 p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~ 88 (367)
T TIGR02604 11 PLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT 88 (367)
T ss_pred CccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC
Confidence 3334456899999986555432 12 3777776542 3321 2221 12345778888887 77765
Q ss_pred cCCcEEEEEE
Q 001538 87 ENGLMSVIKY 96 (1057)
Q Consensus 87 ~~G~v~v~~~ 96 (1057)
.. .||.+
T Consensus 89 ~~---~i~~~ 95 (367)
T TIGR02604 89 PP---DILFL 95 (367)
T ss_pred CC---eEEEE
Confidence 44 46655
No 441
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=63.28 E-value=1.5e+02 Score=34.94 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=100.0
Q ss_pred ccCCcEEEEcCC---CeEEEEEc-----CC---CCCeeEEEEEcCCcEEE-EEeCCCcEEEEECCCCceeeeecCCCCEE
Q 001538 4 CRDGRIKVIGGD---GIEGLLIS-----PS---QLPYKNLEFLQNQGFLI-SITNDNEIQVWSLESRSLACCLKWESNIT 71 (1057)
Q Consensus 4 t~dG~I~v~g~~---~~e~~~~~-----~~---~~~v~~L~F~~~~~~Lv-s~s~d~~I~VWdl~s~~~l~tl~~~~~It 71 (1057)
|++++|-||... +.|..... +. -.|-+-|-...+...|. .++..+.+.--|++.|+++-.......+
T Consensus 434 tR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv- 512 (776)
T COG5167 434 TRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV- 512 (776)
T ss_pred eeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-
Confidence 677888888532 23322111 10 12344455555554443 3345567777788888887777655545
Q ss_pred EEEEecCCc-------EEEEEccCCcEEEEEEeCCC--CceeccC---cccchhhhhhhcCCCCCCCCCeEEEEeCcCCC
Q 001538 72 AFSVISGSH-------FMYIGDENGLMSVIKYDADE--GKLFQLP---YNISADALSEKAGFPLLSHQPVVGVLPHPNSS 139 (1057)
Q Consensus 72 a~~~sp~~~-------~l~vG~~~G~v~v~~~d~~~--~~l~~~~---~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~ 139 (1057)
-+.+.|.-+ .-++|.++. .|+.+|+.- .++..-. |.-.+ ...|+.-.. .
T Consensus 513 vVqy~p~~kf~qmt~eqtlvGlS~~--svFrIDPR~~gNKi~v~esKdY~tKn---------------~Fss~~tTe--s 573 (776)
T COG5167 513 VVQYNPYFKFQQMTDEQTLVGLSDY--SVFRIDPRARGNKIKVVESKDYKTKN---------------KFSSGMTTE--S 573 (776)
T ss_pred eeecCCchhHHhcCccceEEeeccc--ceEEecccccCCceeeeeehhccccc---------------ccccccccc--C
Confidence 455555433 236788888 788887731 2222000 11111 122222222 3
Q ss_pred CCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001538 140 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 219 (1057)
Q Consensus 140 g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~ 219 (1057)
| +++++++.|.|+|||--.-+....+.+ -...|..+... .+|.+|++.+
T Consensus 574 G-yIa~as~kGDirLyDRig~rAKtalP~-----------------------------lG~aIk~idvt-a~Gk~ilaTC 622 (776)
T COG5167 574 G-YIAAASRKGDIRLYDRIGKRAKTALPG-----------------------------LGDAIKHIDVT-ANGKHILATC 622 (776)
T ss_pred c-eEEEecCCCceeeehhhcchhhhcCcc-----------------------------cccceeeeEee-cCCcEEEEee
Confidence 4 799999999999999643333322221 03467778888 8999988776
Q ss_pred cCCcEEEEeCCC
Q 001538 220 IDGDILLWNTST 231 (1057)
Q Consensus 220 ~DG~I~lWd~~~ 231 (1057)
. +.|.+-|++-
T Consensus 623 k-~yllL~d~~i 633 (776)
T COG5167 623 K-NYLLLTDVPI 633 (776)
T ss_pred c-ceEEEEeccc
Confidence 5 4777777753
No 442
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=62.27 E-value=1.6e+02 Score=35.36 Aligned_cols=131 Identities=14% Similarity=0.193 Sum_probs=62.7
Q ss_pred EEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCE----EEEEEecCCcEEEEEccCC------cE-----EEEEE
Q 001538 32 LEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNI----TAFSVISGSHFMYIGDENG------LM-----SVIKY 96 (1057)
Q Consensus 32 L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~I----ta~~~sp~~~~l~vG~~~G------~v-----~v~~~ 96 (1057)
+.+.+||.+|+... +.+...|+. |+.+.....++.- ..+...|.|++|+++.+.- .. .|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 77788886665443 888888885 5555445444322 2456778888887777200 00 24444
Q ss_pred eCCCCceecc--------Ccccchh-h--hhhhcC-CCCCCCCCeEEEEeCcCCCCCeEEEEECCC-EEEEEEccCCeEE
Q 001538 97 DADEGKLFQL--------PYNISAD-A--LSEKAG-FPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQII 163 (1057)
Q Consensus 97 d~~~~~l~~~--------~~~i~~~-~--~~~~~g-~~~~~~~~V~sI~~sP~d~g~~lli~~~dG-~I~lWdl~~~~~~ 163 (1057)
| ..|+++.. +++.... . .....+ ....+=-.+.+|.+.|.+ + .|++.+++- .|...|.++++++
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d-d-~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD-D-SIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT-T-EEEEEETTT-EEEEEE-TTS-EE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC-C-eEEEEcCcceEEEEEECCCCcEE
Confidence 4 34443310 1111000 0 000000 001112358999999963 4 478888875 8888998999999
Q ss_pred EEecC
Q 001538 164 FVGGG 168 (1057)
Q Consensus 164 ~~~~~ 168 (1057)
..++.
T Consensus 307 Wilg~ 311 (477)
T PF05935_consen 307 WILGP 311 (477)
T ss_dssp EEES-
T ss_pred EEeCC
Confidence 88876
No 443
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=61.80 E-value=2.5e+02 Score=30.78 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=96.4
Q ss_pred EEEEEcCCC--CCeeEEEEEcCCcEEEEEeCCC--cEEEEECCCCceeeeecCCCCEE--EEEEecCCcEEEEEccCCcE
Q 001538 18 EGLLISPSQ--LPYKNLEFLQNQGFLISITNDN--EIQVWSLESRSLACCLKWESNIT--AFSVISGSHFMYIGDENGLM 91 (1057)
Q Consensus 18 e~~~~~~~~--~~v~~L~F~~~~~~Lvs~s~d~--~I~VWdl~s~~~l~tl~~~~~It--a~~~sp~~~~l~vG~~~G~v 91 (1057)
+++-+.|+. .=...|.|..++.++-+.+.-| .|+.+|+.+++.+.....+...- .+++. +.+..-+--.+|
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~-- 110 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG-- 110 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS--
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC--
Confidence 555556653 3356799988886667777554 89999999999887776554332 23332 223333445667
Q ss_pred EEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcc
Q 001538 92 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDL 171 (1057)
Q Consensus 92 ~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~ 171 (1057)
..+.||....+... .|..+ ..=+.|+ . +|+.|..+.....+.++|..+-+.+....-++.
T Consensus 111 ~~f~yd~~tl~~~~-~~~y~---------------~EGWGLt--~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~ 170 (264)
T PF05096_consen 111 TGFVYDPNTLKKIG-TFPYP---------------GEGWGLT--S--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN 170 (264)
T ss_dssp EEEEEETTTTEEEE-EEE-S---------------SS--EEE--E--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET
T ss_pred eEEEEccccceEEE-EEecC---------------CcceEEE--c--CCCEEEEECCccceEEECCcccceEEEEEEEEC
Confidence 56666765433321 12221 1124444 2 577788888888999999988877665443110
Q ss_pred cccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001538 172 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 233 (1057)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~~ 233 (1057)
+ ..-..+..+.|. +|...|=......|..-|..+|.
T Consensus 171 ---------------g---------~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 171 ---------------G---------RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp ---------------T---------EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-B
T ss_pred ---------------C---------EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCe
Confidence 0 014466778887 78777778888888888888885
No 444
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.35 E-value=41 Score=35.62 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=39.9
Q ss_pred EEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEe
Q 001538 559 LQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 559 La~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~ 607 (1057)
+++.-+|.+.++....|+|.-+|..+++++..+.. ....|+|++|.
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEec
Confidence 33456898889999999999999999999998877 57889999997
No 445
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=61.23 E-value=1.2e+02 Score=38.92 Aligned_cols=129 Identities=14% Similarity=0.146 Sum_probs=83.4
Q ss_pred cCCcEEEEc----CCCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeec---CCCCEEEEEEec
Q 001538 5 RDGRIKVIG----GDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK---WESNITAFSVIS 77 (1057)
Q Consensus 5 ~dG~I~v~g----~~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~---~~~~Ita~~~sp 77 (1057)
.+|.++.|. ++..|.+...+-..++- +..|.++++++ +..+.++++|+-.++++..-. .+..|+.+.+
T Consensus 910 ~~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt-- 984 (1205)
T KOG1898|consen 910 SSGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT-- 984 (1205)
T ss_pred CCCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--
Confidence 356777774 34455554444444554 44566666665 478999999999988865442 2456666665
Q ss_pred CCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEE
Q 001538 78 GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 155 (1057)
Q Consensus 78 ~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lW 155 (1057)
....+++|+..-.|..+.|+.++.+|. .|.-.. -.-.|+++.+-- .++ ++.+..-|.+.+-
T Consensus 985 ~~~RI~VgD~qeSV~~~~y~~~~n~l~--~fadD~------------~pR~Vt~~~~lD--~~t-vagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 985 YGARIVVGDIQESVHFVRYRREDNQLI--VFADDP------------VPRHVTALELLD--YDT-VAGADRFGNIAVV 1045 (1205)
T ss_pred cceEEEEeeccceEEEEEEecCCCeEE--EEeCCC------------ccceeeEEEEec--CCc-eeeccccCcEEEE
Confidence 578999999999899999999888776 332211 112455555442 455 8888777776433
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=59.92 E-value=2.9e+02 Score=30.90 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=81.0
Q ss_pred ccccCCcEEEEcCC--C-----eEEEE-EcCCCCCeeEEEEEcC--CcEEEEEe-CCCcEEEEECCCCceee--eecCC-
Q 001538 2 CLCRDGRIKVIGGD--G-----IEGLL-ISPSQLPYKNLEFLQN--QGFLISIT-NDNEIQVWSLESRSLAC--CLKWE- 67 (1057)
Q Consensus 2 vgt~dG~I~v~g~~--~-----~e~~~-~~~~~~~v~~L~F~~~--~~~Lvs~s-~d~~I~VWdl~s~~~l~--tl~~~- 67 (1057)
-+|.||+|.-|-.. - -..++ .+....-+|-|++..+ +.+|.+++ ..++|.|+|-.-.++.. .+..+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 36899999999631 1 11222 1223456888998865 45888887 46899999865444311 11100
Q ss_pred -------CCE---------EEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEE
Q 001538 68 -------SNI---------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 131 (1057)
Q Consensus 68 -------~~I---------ta~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~s 131 (1057)
-.| |-..-+++.+.=+.|...|-|-++ |.+ ++|. .++. +......-+.
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvF--d~~-G~l~---~r~a----------s~g~LNaPWG 248 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVF--TLN-GQLL---RRVA----------SSGRLNAPWG 248 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEE--cCC-CcEE---EEec----------cCCcccCCce
Confidence 011 222222333223334445644443 332 3343 1111 1222334566
Q ss_pred EEeCcCC----CCCeEEEE-ECCCEEEEEEccCCeEEEEecC
Q 001538 132 VLPHPNS----SGNRVLIA-YENALVILWDVSEAQIIFVGGG 168 (1057)
Q Consensus 132 I~~sP~d----~g~~lli~-~~dG~I~lWdl~~~~~~~~~~~ 168 (1057)
|+..|.+ .|. ||++ +.||+|..||..+++.+-.+..
T Consensus 249 ~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 249 LAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred eeeChhhhCCCCCC-eEEeecCCceeEEecCCCCceeeeecC
Confidence 6666643 344 6665 7899999999999987755543
No 447
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=59.28 E-value=2.7e+02 Score=35.73 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=54.2
Q ss_pred CCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEE
Q 001538 125 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 204 (1057)
Q Consensus 125 ~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vts 204 (1057)
...+.+.++|+|.+.+ ++|+....|...+||+..+.-... . ..+..+ ... |. + -.+..+...-..
T Consensus 144 gg~~~aDv~FnP~~~~-q~AiVD~~G~Wsvw~i~~~~~~~~-~--~~~~~~-------~~~-gs--i-~~d~~e~s~w~r 208 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQR-QFAIVDEKGNWSVWDIKGRPKRKS-S--NLRLSR-------NIS-GS--I-IFDPEELSNWKR 208 (765)
T ss_pred CCCccceEEeccCccc-eEEEEeccCcEEEEEeccccccCC-c--ceeecc-------CCC-cc--c-cCCCcccCccee
Confidence 3568899999998655 799999999999999922211100 0 000000 000 10 0 001112355668
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 205 LCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 205 l~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
++|. ++-..|++.. ...+.+.|+.+.
T Consensus 209 I~W~-~~~~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 209 ILWV-SDSNRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred eEec-CCCCEEEEEc-CCceEEEECCCC
Confidence 9998 7777776664 457888888765
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=59.13 E-value=1.3e+02 Score=36.22 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=34.7
Q ss_pred CCCcEEEEEeCCC--cEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCc---cEEEEEecC
Q 001538 443 SVDRVYLAGYHDG--SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG---LVYIYNLNG 517 (1057)
Q Consensus 443 ~~~~~liTG~~DG--tVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG---~V~l~~~~~ 517 (1057)
-++.+++.|+.++ +|..||........+..+.. . .-......-+++..++|+.++ .+..||..+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~---------~--r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK---------P--RCNPAVASINNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC---------C--CcccEEEEECCEEEEecCcCCCCccEEEEeCCC
Confidence 4567888888654 57788876554322211110 0 111112233677778887654 356676554
Q ss_pred C
Q 001538 518 S 518 (1057)
Q Consensus 518 ~ 518 (1057)
+
T Consensus 386 ~ 386 (480)
T PHA02790 386 D 386 (480)
T ss_pred C
Confidence 4
No 449
>PHA02713 hypothetical protein; Provisional
Probab=58.86 E-value=2.9e+02 Score=33.93 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=15.7
Q ss_pred CCCEEEEEEcCC--cEEEEeCCCC
Q 001538 211 SGSILAVGYIDG--DILLWNTSTT 232 (1057)
Q Consensus 211 dG~~latg~~DG--~I~lWd~~~~ 232 (1057)
+|...++|+.|| ++-.+|+.+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccc
Confidence 688888888888 5666666544
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=58.71 E-value=30 Score=39.80 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=93.7
Q ss_pred CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceee-eec--CCC----CEE-EEEEecCCcEEEEEccCCcEEEEEEeC
Q 001538 27 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC-CLK--WES----NIT-AFSVISGSHFMYIGDENGLMSVIKYDA 98 (1057)
Q Consensus 27 ~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~-tl~--~~~----~It-a~~~sp~~~~l~vG~~~G~v~v~~~d~ 98 (1057)
.+|+.|-..|+++.|...+. +++.|++++++.+-. .+- .++ .|| +...-.++.-++++++||.|.-|.--.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 56888999999988877654 899999998876521 111 122 333 233345677889999999888885322
Q ss_pred CCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEEEecCCcccccCCcc
Q 001538 99 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVV 178 (1057)
Q Consensus 99 ~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~~~~~~~~~~~~~~~ 178 (1057)
+++.-. -..+.+.. -...+|-.+...- .-+-+..-|++|++.++.-...+.+..-..
T Consensus 300 ~~~~p~--l~h~R~f~---------l~pa~~~~l~pe~--~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---------- 356 (733)
T COG4590 300 RDGQPH--LNHIRNFK---------LAPAEVQFLLPET--NRKGFYSLYRNGTLQSFYSTSEKLLLFERA---------- 356 (733)
T ss_pred cCCCCc--ceeeeccc---------cCcccceeecccc--ccceEEEEcCCCceeeeecccCcceehhhh----------
Confidence 222110 01122111 0123444444433 334467778888886665443333221110
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCCC
Q 001538 179 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 232 (1057)
Q Consensus 179 ~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~~ 232 (1057)
...+.-+.++ |++.++++- ..|.|+++.+++.
T Consensus 357 --------------------~~~~~~~~~S-p~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 357 --------------------YQAPQLVAMS-PNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred --------------------hcCcceeeeC-cccchheee-cCCceEEEEecCC
Confidence 2244567888 999988764 5688999888654
No 451
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=57.70 E-value=44 Score=24.57 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=23.8
Q ss_pred CCCCEEEEEe-CCceEEEEeCCCCeEEEEeec
Q 001538 563 SSGAKLAVGF-ECGRVAVLDMNLLSVLFFTDD 593 (1057)
Q Consensus 563 ~~g~~lA~G~-~dG~V~vwDi~~~~~l~~~~~ 593 (1057)
|++++|.++. .+++|.++|..+++++.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677665544 688999999999988877655
No 452
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=57.28 E-value=15 Score=26.96 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=20.1
Q ss_pred EEEEEecCCeEEEEeCCCcceee
Q 001538 634 VIIVLFKDAKISIVGGSSENMIS 656 (1057)
Q Consensus 634 ~L~sgt~dg~i~v~d~~tg~~i~ 656 (1057)
.+++++.||.|..+|..||+++=
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEE
Confidence 36777999999999999999874
No 453
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.80 E-value=1e+02 Score=35.75 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=55.0
Q ss_pred cCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCce--e--eeecC-CCCEEEEEEecCCcEEEEEccCCcEEEEEEe
Q 001538 23 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL--A--CCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYD 97 (1057)
Q Consensus 23 ~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~--l--~tl~~-~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d 97 (1057)
.....+|+.++|++|...|+.--.+++|++.+..-.+. . ++-+. ...|-.|.|+.+.+ +++-...| +.++.++
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVL 140 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEc
Confidence 34466999999999999999999999999999833222 1 11122 24588899987744 44555566 5888887
Q ss_pred CCCCce
Q 001538 98 ADEGKL 103 (1057)
Q Consensus 98 ~~~~~l 103 (1057)
+..+.+
T Consensus 141 pekrsl 146 (657)
T KOG2377|consen 141 PEKRSL 146 (657)
T ss_pred hhhhhh
Confidence 764433
No 454
>PHA02790 Kelch-like protein; Provisional
Probab=56.69 E-value=4.2e+02 Score=31.83 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=46.3
Q ss_pred CcEEEEECCCCceee--eecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCC
Q 001538 48 NEIQVWSLESRSLAC--CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 125 (1057)
Q Consensus 48 ~~I~VWdl~s~~~l~--tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~ 125 (1057)
.++..||..+++-.. .+..+. .....+.-++...++|..++.-.+..||+..++-.. ++ .++...
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r-~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~----~~--------~l~~~r 353 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPR-LYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN----MP--------SLLKPR 353 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchh-hcceEEEECCEEEEECCcCCCCceEEEECCCCeEEE----CC--------CCCCCC
Confidence 357778887765322 222211 111122345666667765543456777765432220 11 122111
Q ss_pred CCCeEEEEeCcCCCCCeEEEEECCC---EEEEEEccCCeEE
Q 001538 126 HQPVVGVLPHPNSSGNRVLIAYENA---LVILWDVSEAQII 163 (1057)
Q Consensus 126 ~~~V~sI~~sP~d~g~~lli~~~dG---~I~lWdl~~~~~~ 163 (1057)
... ..+.. +|...++|+.++ .+..||..+++..
T Consensus 354 ~~~-~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 354 CNP-AVASI----NNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred ccc-EEEEE----CCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 111 11222 365556666543 4667888777664
No 455
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=56.69 E-value=1.5e+02 Score=32.97 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=54.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEe------CCceEEEEeCCCCeEEEEeecC-CCCCCCeEEEEEeeccCcccccCCCCCCCC
Q 001538 552 VNSPVRALQFTSSGAKLAVGF------ECGRVAVLDMNLLSVLFFTDDI-SGSSSPIISMTWTEFKNTHSLAKNPNHSER 624 (1057)
Q Consensus 552 h~~~ItsLa~S~~g~~lA~G~------~dG~V~vwDi~~~~~l~~~~~~-~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~ 624 (1057)
-.+.|++|.|..+.+++++|. ....+..||..+.+.--..... .....+|+.+.+..
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~---------------- 98 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFIS---------------- 98 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeec----------------
Confidence 467899999987777888875 5678999999887653221111 12457899998862
Q ss_pred cCCCCCCC-cEEEEEe---cCCeEEEEeCCCcceeec
Q 001538 625 EVPVNPAE-EVIIVLF---KDAKISIVGGSSENMISS 657 (1057)
Q Consensus 625 ~~~~~~d~-~~L~sgt---~dg~i~v~d~~tg~~i~~ 657 (1057)
.|. ++.+.|. .+..|..||...-.-+..
T Consensus 99 -----~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 99 -----NDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred -----cCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 222 3333333 344578888776555555
No 456
>PRK13684 Ycf48-like protein; Provisional
Probab=56.24 E-value=3.5e+02 Score=30.77 Aligned_cols=116 Identities=10% Similarity=-0.051 Sum_probs=60.2
Q ss_pred CCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCC
Q 001538 487 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 566 (1057)
Q Consensus 487 ~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~ 566 (1057)
..++++.+.++++.+++| ..|.+++=.-.....-.. +.. ........+.++++.+++.
T Consensus 215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~-------------~~~--------~~~~~~~~l~~v~~~~~~~ 272 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK-------------PII--------PEITNGYGYLDLAYRTPGE 272 (334)
T ss_pred ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc-------------ccC--------CccccccceeeEEEcCCCC
Confidence 478999999999877776 457653211111110000 000 0001123578899999887
Q ss_pred EEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEE
Q 001538 567 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISI 646 (1057)
Q Consensus 567 ~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v 646 (1057)
.+++| .+|.|. ....+++--......++.+.....+.|. . ....+..+..|.|..
T Consensus 273 ~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~----------------------~-~~~~~~~G~~G~il~ 327 (334)
T PRK13684 273 IWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL----------------------D-PEKGFVLGQRGVLLR 327 (334)
T ss_pred EEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe----------------------C-CCceEEECCCceEEE
Confidence 66555 566443 4443333211111101223356666665 2 234566788899988
Q ss_pred EeC
Q 001538 647 VGG 649 (1057)
Q Consensus 647 ~d~ 649 (1057)
++.
T Consensus 328 ~~~ 330 (334)
T PRK13684 328 YVG 330 (334)
T ss_pred ecC
Confidence 864
No 457
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=55.65 E-value=1e+02 Score=35.41 Aligned_cols=94 Identities=12% Similarity=0.199 Sum_probs=66.8
Q ss_pred CcEEEEcCC-CeEEEE-EcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECCCC---ceeeeecCCCCEEEEEEecCCcE
Q 001538 7 GRIKVIGGD-GIEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR---SLACCLKWESNITAFSVISGSHF 81 (1057)
Q Consensus 7 G~I~v~g~~-~~e~~~-~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~---~~l~tl~~~~~Ita~~~sp~~~~ 81 (1057)
+.|.|++.+ ++..-+ -...+..|.+++|..|..|+|+--+-+-+.+.|+... +.+..++.++--+-+...-.+.+
T Consensus 406 N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~ 485 (603)
T COG4880 406 NAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL 485 (603)
T ss_pred ceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence 345666543 222222 2344678999999999999999988888999998764 45777766665455555556778
Q ss_pred EEEEccCCcEEEEEEeCCC
Q 001538 82 MYIGDENGLMSVIKYDADE 100 (1057)
Q Consensus 82 l~vG~~~G~v~v~~~d~~~ 100 (1057)
+-+|-.+|.+++--+|..+
T Consensus 486 lGvG~~~g~vKiSLFdiSd 504 (603)
T COG4880 486 LGVGAYQGGVKISLFDISD 504 (603)
T ss_pred EEeecccCCceEEEEeccC
Confidence 8899999988887777643
No 458
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=55.34 E-value=85 Score=34.16 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=42.2
Q ss_pred CEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCC--CcEEEEEecCCe
Q 001538 566 AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPA--EEVIIVLFKDAK 643 (1057)
Q Consensus 566 ~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d--~~~L~sgt~dg~ 643 (1057)
..|++|.++|.|.|.|-+.-.++..... .+-|+.=.+... +| .-.|++++.||.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~l---psvPv~i~~~G~---------------------~devdyRI~Va~Rdg~ 251 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQL---PSVPVFISVSGQ---------------------YDEVDYRIVVACRDGK 251 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEec---CCCceEEEEEee---------------------eeccceEEEEEeCCCE
Confidence 3799999999999999999999988876 334442122221 32 345899999999
Q ss_pred EEEE
Q 001538 644 ISIV 647 (1057)
Q Consensus 644 i~v~ 647 (1057)
|.++
T Consensus 252 iy~i 255 (257)
T PF14779_consen 252 IYTI 255 (257)
T ss_pred EEEE
Confidence 8875
No 459
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=55.24 E-value=2e+02 Score=33.82 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCceEEEEeCCCC---eEEEEee
Q 001538 553 NSPVRALQFTSSGAKL-AVGFECGRVAVLDMNLL---SVLFFTD 592 (1057)
Q Consensus 553 ~~~ItsLa~S~~g~~l-A~G~~dG~V~vwDi~~~---~~l~~~~ 592 (1057)
..-|+.|.+|.|.++| ++.--.|.|+-||+.++ +++.+..
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~ 354 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVF 354 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEE
Confidence 4558999999999998 45568999999999764 5555443
No 460
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.05 E-value=3.9e+02 Score=34.52 Aligned_cols=93 Identities=23% Similarity=0.234 Sum_probs=54.7
Q ss_pred CceEEEEecCeeEEeeccccc-cccceeeeeeccCCcceeeeeeee-CCceeEEEEEEeeCcEEEecCCChhhcccc-cc
Q 001538 730 DALVLLCCEDSVRLYSRKSVI-QGNNKTVQKVKHKNRCCWASTIEK-DEKVCGLLLLFQTGAVQIRSLPDLELVMES-SL 806 (1057)
Q Consensus 730 ~~~v~~~se~~ir~~s~~~~~-~g~~k~~~K~~~~~~~~~~~~~~~-~~~~~~l~~l~~~G~i~i~SlP~L~~~~~~-~~ 806 (1057)
...|+++.++...+....... ++. +.+|..+... -...+-++.+... .|+|||.-+...+... ++
T Consensus 212 ~~~ll~~kd~~gv~vd~~G~~~~~~-----------~l~ws~~P~~v~~~~PYlIa~~~~-~veI~s~~~~qlvQSI~~~ 279 (877)
T KOG2063|consen 212 QSELLLGKDNIGVVVDLNGIIAQRG-----------TLVWSEVPLSVVVESPYLIALLDR-SVEIRSKLDGQLVQSITPL 279 (877)
T ss_pred CceEEEccCceEEEEecCCcccCCC-----------ceEecccchhhcccCceEEEEccc-cEEEEeccCHHHhhccccc
Confidence 347788877777777766543 333 3344333333 1234456666544 9999999999665554 22
Q ss_pred cceeeeccccccccccccc-CccEEEEcCceeEEEEeec
Q 001538 807 MSILRWNFKANMDKTISAD-NGQITLANGSEVAFVNLLA 844 (1057)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~s-~G~i~l~~~~e~~~~s~~~ 844 (1057)
.. .+++++. +|.++..+-..+.++..+.
T Consensus 280 ~~----------~~~l~s~~~~i~~~~~~s~v~~L~p~~ 308 (877)
T KOG2063|consen 280 SN----------GRSLLSAHNGIIFVASLSNVWILVPVS 308 (877)
T ss_pred cc----------cceeeecCCcEEEEEeccceEEEEecc
Confidence 21 2344554 6666666557777775554
No 461
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=54.62 E-value=1.8e+02 Score=34.53 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=38.4
Q ss_pred eeEEEEEcCCcEEEEEeCCCcEEEEECCCCc--eeeeec------CCCCEEEEEEecCC------cEEEEEc
Q 001538 29 YKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCLK------WESNITAFSVISGS------HFMYIGD 86 (1057)
Q Consensus 29 v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~--~l~tl~------~~~~Ita~~~sp~~------~~l~vG~ 86 (1057)
-..|+|.|++..||+--..|.|++++-.++. .+..+. .++....++++|+- .++|+..
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 5689999999666654446999999876543 222221 24567889998773 4677754
No 462
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.22 E-value=15 Score=36.61 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHhhchhhHHHHHHH
Q 001538 1005 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANE 1044 (1057)
Q Consensus 1005 ~~~~~~~~~l~e~~~kl~~~~~~~~~~~~~a~~f~~~a~~ 1044 (1057)
.+....-+.+.||||||..|.++.+.|-...+-|-..|++
T Consensus 151 iiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK 190 (198)
T KOG0861|consen 151 IILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKK 190 (198)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3555566778899999999999999999998888888764
No 463
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.60 E-value=1.3e+02 Score=39.75 Aligned_cols=164 Identities=13% Similarity=0.135 Sum_probs=83.6
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCC-ceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001538 441 CHSVDRVYLAGYHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 519 (1057)
Q Consensus 441 ~~~~~~~liTG~~DGtVriWd~~~~-~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~ 519 (1057)
|..-++.-+| -|..+-+|+...+ ++.....+.+.+..+.+-. ...=.|-|.=++|.+-..--.|.|+-+....
T Consensus 87 FpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~Lvk----PkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 87 FPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVK----PKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred chhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeec----CCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 4455555555 4788999999873 3322222222222222210 0001244444455554455678887665433
Q ss_pred CccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeC--CCCeEEEEeec----
Q 001538 520 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM--NLLSVLFFTDD---- 593 (1057)
Q Consensus 520 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi--~~~~~l~~~~~---- 593 (1057)
..... ... .++ ..+......|+|+....+|+ +..|+.|| .||.+ +...--+.-.+
T Consensus 161 ~~~~~----------~~f--~~~----~~i~~dg~~V~~I~~t~nGR-IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kic 221 (1311)
T KOG1900|consen 161 FTGEL----------SIF--NTS----FKISVDGVSVNCITYTENGR-IFFAGRDG--NLYELVYQAEDGWFGSRCRKIC 221 (1311)
T ss_pred ccCcc----------ccc--ccc----eeeecCCceEEEEEeccCCc-EEEeecCC--CEEEEEEeccCchhhccccccc
Confidence 22111 000 011 12334456789999888995 55566666 45644 11000000000
Q ss_pred ---------------CC-CCCCCeEEEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCC
Q 001538 594 ---------------IS-GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 594 ---------------~~-g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~t 651 (1057)
.. ++.+||..++.+ .+..+|++-+..|+|.+||...
T Consensus 222 lt~s~ls~lvPs~~~~~~~~~dpI~qi~ID----------------------~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 222 LTKSVLSSLVPSLLSVPGSSKDPIRQITID----------------------NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CchhHHHHhhhhhhcCCCCCCCcceeeEec----------------------cccceeeeeccCceEEEEEccC
Confidence 00 123344444443 5578899999999999999765
No 464
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.57 E-value=3.5e+02 Score=29.90 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=25.1
Q ss_pred CeEEEEeCcCCCCCeEEEEECCCEEEEEEccCCeEEE
Q 001538 128 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF 164 (1057)
Q Consensus 128 ~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~~~~~ 164 (1057)
-|-+|+.+-+ ++-..+++=.-....+||..+|.++.
T Consensus 281 YigsiA~n~~-~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 281 YIGSIAANRR-DGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred hhhheeeccc-CCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 4778888865 46434444444567799999999874
No 465
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=53.23 E-value=20 Score=25.07 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=19.8
Q ss_pred EEEEEecCCeEEEEeCCCccee
Q 001538 634 VIIVLFKDAKISIVGGSSENMI 655 (1057)
Q Consensus 634 ~L~sgt~dg~i~v~d~~tg~~i 655 (1057)
.+++++.+|.+..+|.++|+.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEE
Confidence 5888999999999999999875
No 466
>PHA03098 kelch-like protein; Provisional
Probab=53.19 E-value=1.2e+02 Score=36.84 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCcEEEEEeCCC-----cEEEEecCCCce
Q 001538 444 VDRVYLAGYHDG-----SVRIWDATYPVF 467 (1057)
Q Consensus 444 ~~~~liTG~~DG-----tVriWd~~~~~l 467 (1057)
++++++.|+.++ ++..||..+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 567888888663 466677766553
No 467
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=52.02 E-value=22 Score=36.45 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=42.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhhchhhHHHHHHHHHHHhhcccccc
Q 001538 1002 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1056 (1057)
Q Consensus 1002 ~~~~~~~~~~~~l~e~~~kl~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~~~ 1056 (1057)
+.-+++++.++++-+|+|||+-+-+++..|-..+.=|-.-|+. +...-|||
T Consensus 140 e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk----~n~~~~~~ 190 (190)
T COG5143 140 ETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKK----SNLCCLIN 190 (190)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH----hhhhheeC
Confidence 4458999999999999999999999999999998888776654 44456775
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=50.45 E-value=1.5e+02 Score=33.74 Aligned_cols=71 Identities=13% Similarity=0.258 Sum_probs=52.6
Q ss_pred eeEEEEEcCCcEEEEEeCC------CcEEEEECCCCceeeeec----------------CCCCEEEEEEecCCcEEEEEc
Q 001538 29 YKNLEFLQNQGFLISITND------NEIQVWSLESRSLACCLK----------------WESNITAFSVISGSHFMYIGD 86 (1057)
Q Consensus 29 v~~L~F~~~~~~Lvs~s~d------~~I~VWdl~s~~~l~tl~----------------~~~~Ita~~~sp~~~~l~vG~ 86 (1057)
...|++.+++.++++--.+ ..|..++.. |+....+. ....+.+++++|++..|++..
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 4578998888888887777 888888876 66544431 124578999999999888877
Q ss_pred cCC--------------cEEEEEEeCCC
Q 001538 87 ENG--------------LMSVIKYDADE 100 (1057)
Q Consensus 87 ~~G--------------~v~v~~~d~~~ 100 (1057)
+.. .++++.||...
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKT 193 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCC
Confidence 654 26888888764
No 469
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=49.43 E-value=3.6 Score=47.55 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=73.4
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEEEecCccEEEEEecCCCCccceee
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 526 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~ 526 (1057)
+++-++..+.+.+||+.+.--+++ ++.+ +..-.-+.|++.+.++++|...|.++||+....+..
T Consensus 89 lavlAek~~piylwd~n~eytqqL----------E~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~i----- 152 (615)
T KOG2247|consen 89 LAVLAEKTGPIYLWDVNSEYTQQL----------ESGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI----- 152 (615)
T ss_pred hhhhhhcCCCeeechhhhhhHHHH----------hccC-cchHHHHhhccCCccccccccccceEEEeccchhhh-----
Confidence 455667888999999986532211 1211 112223789999999999999999999997665432
Q ss_pred eecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeE
Q 001538 527 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV 587 (1057)
Q Consensus 527 ~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~ 587 (1057)
.+...|...++++++.+.+ +++.++.|..+.+-...+-+.
T Consensus 153 --------------------iv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qegeta 192 (615)
T KOG2247|consen 153 --------------------IVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEGETA 192 (615)
T ss_pred --------------------hhhcccccceeEEEecccc-eeeecCcHHHHHHhhhcccee
Confidence 1222388899999999988 889999998887776655433
No 470
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=48.32 E-value=4.8e+02 Score=29.98 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=56.1
Q ss_pred ccccCCcEEEEcCCCeEEEEEcCCC---CCeeEEEEEcCCcEEEEEeCCCcEEEEECCCCceeeeecCCC-CEEEEEEec
Q 001538 2 CLCRDGRIKVIGGDGIEGLLISPSQ---LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES-NITAFSVIS 77 (1057)
Q Consensus 2 vgt~dG~I~v~g~~~~e~~~~~~~~---~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~-~Ita~~~sp 77 (1057)
+++.+|.|.-+..++...+=..+.. ..+..-.+..++ .|+.++.++.+...|..+|+.+-.....+ ...+-....
T Consensus 73 ~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~ 151 (370)
T COG1520 73 VGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVV 151 (370)
T ss_pred EecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEE
Confidence 4566676666655544432111111 112222233455 57778888888888888888876665444 122222223
Q ss_pred CCcEEEEEccCCcEEEEEEeCCCCcee
Q 001538 78 GSHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 78 ~~~~l~vG~~~G~v~v~~~d~~~~~l~ 104 (1057)
....+++++.+| ++..++.+.+++.
T Consensus 152 ~~~~v~~~s~~g--~~~al~~~tG~~~ 176 (370)
T COG1520 152 GDGTVYVGTDDG--HLYALNADTGTLK 176 (370)
T ss_pred cCcEEEEecCCC--eEEEEEccCCcEE
Confidence 445666666778 6777777766654
No 471
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.15 E-value=3.2e+02 Score=32.64 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCCeEEEEecCccEEEEE---ecCCCCccceeeeecCCCceEEeccCCcceeeEEEe-eCCCCeEEEEE
Q 001538 486 RAPVSTLSFCFINSSLAVGNEFGLVYIYN---LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS-LVNSPVRALQF 561 (1057)
Q Consensus 486 ~~~V~~v~fspd~~~Lavg~~dG~V~l~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~-~h~~~ItsLa~ 561 (1057)
...|..|..++.|..++-.+-+|.+.+|= |..+..... .+..+..-...-+-+ .|. ...-.+...+|
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD------gk~~v~CRt~~i~~~---~ftss~~ltl~Qa~W 173 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED------GKSTVNCRTTPVAER---FFTSSTSLTLKQAAW 173 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecC------CCceEEEEeecccce---eeccCCceeeeeccc
Confidence 34688899999999999999999888775 443332211 010111000000000 111 11224566788
Q ss_pred cCCC---CEEEEEeCCceEEEEeCCCCeEEEEeec
Q 001538 562 TSSG---AKLAVGFECGRVAVLDMNLLSVLFFTDD 593 (1057)
Q Consensus 562 S~~g---~~lA~G~~dG~V~vwDi~~~~~l~~~~~ 593 (1057)
.|+. .+|.+=+.|.+++|||+...+-+|....
T Consensus 174 HP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 174 HPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred cCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 8875 6788999999999999998888876543
No 472
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=46.05 E-value=54 Score=24.21 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=16.0
Q ss_pred CcEEEEEecCCeEEEEeCCC
Q 001538 632 EEVIIVLFKDAKISIVGGSS 651 (1057)
Q Consensus 632 ~~~L~sgt~dg~i~v~d~~t 651 (1057)
+..+++++.||.|..+|.+|
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 56799999999999999865
No 473
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.61 E-value=2.7e+02 Score=34.71 Aligned_cols=193 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred CcCCCCCCCCCCCCccccCCCCcEEEEEeCC---Cc-------EEEEecCCCceeEEeecccceeeeeecCCCCCEEEEE
Q 001538 424 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHD---GS-------VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 493 (1057)
Q Consensus 424 ~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~D---Gt-------VriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~ 493 (1057)
++||+..-..... +..+.+.-|+..-.+ -. |+|++.++..+..+.-.++ ++-.+.
T Consensus 26 ~~W~l~dl~~~~f---a~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~------------~lI~mg 90 (829)
T KOG2280|consen 26 MKWPLTDLYYVYF---ACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG------------ELIGMG 90 (829)
T ss_pred cCCcccccceeEE---EecccCCceEEEecccccccccccceeEEEEeccccchHHHHhcCC------------Ceeeec
Q ss_pred EecCCCeEEEEecCccEEEEEecCCCCccceeeeecCCCceEEeccCCcceeeEEEeeCCCCeEEEEEcCCCCEEEEEeC
Q 001538 494 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE 573 (1057)
Q Consensus 494 fspd~~~Lavg~~dG~V~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~lA~G~~ 573 (1057)
|+ +...|++-..+|+|++|++.......... -+......|.-..|..+| +|+=..
T Consensus 91 Ws-~~eeLI~v~k~g~v~Vy~~~ge~ie~~sv----------------------g~e~~~~~I~ec~~f~~G--Vavlt~ 145 (829)
T KOG2280|consen 91 WS-DDEELICVQKDGTVHVYGLLGEFIESNSV----------------------GFESQMSDIVECRFFHNG--VAVLTV 145 (829)
T ss_pred cc-CCceEEEEeccceEEEeecchhhhccccc----------------------ccccccCceeEEEEecCc--eEEEec
Q ss_pred CceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccc------------------------cCCCCCCCCcCCCC
Q 001538 574 CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSL------------------------AKNPNHSEREVPVN 629 (1057)
Q Consensus 574 dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~------------------------~~~~~~~~~~~~~~ 629 (1057)
+|+|.+..-..-..++.+.-..+...+-++.+..+....... ...+..+-.+...+
T Consensus 146 ~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS 225 (829)
T KOG2280|consen 146 SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVS 225 (829)
T ss_pred CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEc
Q ss_pred CCCcEEEEEecCCeEEEEeCCCcceee
Q 001538 630 PAEEVIIVLFKDAKISIVGGSSENMIS 656 (1057)
Q Consensus 630 ~d~~~L~sgt~dg~i~v~d~~tg~~i~ 656 (1057)
|....|+--+..|.|.+.+.+..+.++
T Consensus 226 ~n~~~laLyt~~G~i~~vs~D~~~~lc 252 (829)
T KOG2280|consen 226 PNRRFLALYTETGKIWVVSIDLSQILC 252 (829)
T ss_pred CCcceEEEEecCCcEEEEecchhhhhh
No 474
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=45.28 E-value=3.3e+02 Score=35.79 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCcEEEEc---------CC----CeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCCcEEEEECC-CCceeeeecCCCCEE
Q 001538 6 DGRIKVIG---------GD----GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCLKWESNIT 71 (1057)
Q Consensus 6 dG~I~v~g---------~~----~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~-s~~~l~tl~~~~~It 71 (1057)
-|+|+||. ++ .+..++.-+.+.+|..++=..+ +|+++ ....|.||+++ ...+.-.-..+-++.
T Consensus 1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G--~l~~~-~GqKI~v~~l~r~~~ligVaFiD~~~y 1140 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRG--HLLSS-QGQKIIVRKLDRDSELIGVAFIDLPLY 1140 (1366)
T ss_pred cccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEecc--EEEEc-cCcEEEEEEeccCCcceeeEEecccee
Confidence 48999984 22 2334444455778888877654 47664 66789999994 444433333344454
Q ss_pred EEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCE
Q 001538 72 AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 151 (1057)
Q Consensus 72 a~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~ 151 (1057)
......=.++++.|+-...|+.+.|+.+ ||++.-..+. ...-.|.++.|--+...=.+|++.+++.
T Consensus 1141 v~s~~~vknlIl~gDV~ksisfl~fqee-------p~rlsL~srd-------~~~l~v~s~EFLVdg~~L~flvsDa~rN 1206 (1366)
T KOG1896|consen 1141 VHSMKVVKNLILAGDVMKSISFLGFQEE-------PYRLSLLSRD-------FEPLNVYSTEFLVDGSNLSFLVSDADRN 1206 (1366)
T ss_pred EEehhhhhhheehhhhhhceEEEEEccC-------ceEEEEeecC-------CchhhceeeeeEEcCCeeEEEEEcCCCc
Confidence 4444445788999999998999988765 3443321110 0123467777754211112667777787
Q ss_pred EEEEEc
Q 001538 152 VILWDV 157 (1057)
Q Consensus 152 I~lWdl 157 (1057)
|.+|-.
T Consensus 1207 i~vy~Y 1212 (1366)
T KOG1896|consen 1207 IHVYMY 1212 (1366)
T ss_pred EEEEEe
Confidence 766543
No 475
>PHA03098 kelch-like protein; Provisional
Probab=43.45 E-value=6.8e+02 Score=30.37 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=14.4
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCce
Q 001538 37 NQGFLISITND-----NEIQVWSLESRSL 60 (1057)
Q Consensus 37 ~~~~Lvs~s~d-----~~I~VWdl~s~~~ 60 (1057)
++...+.++.+ +++.+||..+++-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 44444455543 4678888877653
No 476
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=42.91 E-value=48 Score=23.03 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCCEEEEEeCCceEEEEeCCCCeEEEEe
Q 001538 564 SGAKLAVGFECGRVAVLDMNLLSVLFFT 591 (1057)
Q Consensus 564 ~g~~lA~G~~dG~V~vwDi~~~~~l~~~ 591 (1057)
+| .|.+++.+|.+..+|..++++++..
T Consensus 6 ~~-~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DG-TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CC-EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 44 6888899999999999999988763
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=42.69 E-value=8.5e+02 Score=31.28 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=26.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCceEEEEeC
Q 001538 553 NSPVRALQFTS-SGAKLAVGFECGRVAVLDM 582 (1057)
Q Consensus 553 ~~~ItsLa~S~-~g~~lA~G~~dG~V~vwDi 582 (1057)
..+...++|+| +.+.||+-+..|+-.|||+
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEe
Confidence 34788999998 4468999999999999999
No 478
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=42.50 E-value=1.2e+02 Score=35.39 Aligned_cols=147 Identities=15% Similarity=0.243 Sum_probs=65.8
Q ss_pred CcEEEEcCCCeEEEEEcCC--CC--CeeEEEEEcCCcEEEEEe--------------------CCCcEEEEECCCCceee
Q 001538 7 GRIKVIGGDGIEGLLISPS--QL--PYKNLEFLQNQGFLISIT--------------------NDNEIQVWSLESRSLAC 62 (1057)
Q Consensus 7 G~I~v~g~~~~e~~~~~~~--~~--~v~~L~F~~~~~~Lvs~s--------------------~d~~I~VWdl~s~~~l~ 62 (1057)
|.+-++..+..++.-.-+. .. --....+-|....+++.. ..+++.|||+.+++++.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 4455555555555544332 11 123455667666677654 35689999999999999
Q ss_pred eecCC--CCE---EEEEEecCCcEEEEEccCCcEEEEEEeC-CCCceeccC--cccchhhhhhhcCCCCC--------CC
Q 001538 63 CLKWE--SNI---TAFSVISGSHFMYIGDENGLMSVIKYDA-DEGKLFQLP--YNISADALSEKAGFPLL--------SH 126 (1057)
Q Consensus 63 tl~~~--~~I---ta~~~sp~~~~l~vG~~~G~v~v~~~d~-~~~~l~~~~--~~i~~~~~~~~~g~~~~--------~~ 126 (1057)
++... +.+ .-+...|+..+-++|+.=+. .||.+-. ++++-. .. -.|+.. +..+.... -+
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss-~i~~~~k~~~g~W~-a~kVi~ip~~---~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSS-SIWRFYKDDDGEWA-AEKVIDIPAK---KVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--E-EEEEEEE-ETTEEE-EEEEEEE--E---E--SS---GGGGGG-EE-
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccc-eEEEEEEcCCCCee-eeEEEECCCc---ccCcccccccccccccCC
Confidence 99653 211 12445677778888776332 5555422 222211 00 112211 00000000 02
Q ss_pred CCeEEEEeCcCCCCCeEEEE-ECCCEEEEEEccCC
Q 001538 127 QPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEA 160 (1057)
Q Consensus 127 ~~V~sI~~sP~d~g~~lli~-~~dG~I~lWdl~~~ 160 (1057)
.-|+.|..+.+ .+.|.+. ..+|.|+.||++.-
T Consensus 312 ~LitDI~iSlD--DrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 312 PLITDILISLD--DRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -----EEE-TT--S-EEEEEETTTTEEEEEE-SST
T ss_pred CceEeEEEccC--CCEEEEEcccCCcEEEEecCCC
Confidence 34789999994 4555555 45899999999754
No 479
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=41.66 E-value=5.5e+02 Score=28.79 Aligned_cols=182 Identities=13% Similarity=0.036 Sum_probs=87.0
Q ss_pred EEEEEeCCCcEEEEecCCCceeEEeecccceeeeeecCCCCCEEEEEEecC--CCeE-EEEecCccEEEEEecCCCCccc
Q 001538 447 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI--NSSL-AVGNEFGLVYIYNLNGSLDAKN 523 (1057)
Q Consensus 447 ~liTG~~DGtVriWd~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd--~~~L-avg~~dG~V~l~~~~~~~~~~~ 523 (1057)
.++.+++||+|.=|...-....+. ..+..++-......-..+++... +.+| |+=-.+|+|.|||-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~- 176 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMT----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL- 176 (336)
T ss_pred eEEEEeCCceEEeecCcCCccccc----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC-
Confidence 468889999999998543321000 01111110011122345555533 3344 333456777777643222110
Q ss_pred eeeeecCCCceEEeccCCcceeeEEEee-CCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeE
Q 001538 524 FLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 602 (1057)
Q Consensus 524 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~-h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~ 602 (1057)
++...+-....||-|.-.... ..--|+--.-.++.+.=+.|-.-|.|-++|..+. .+..+.. .+.=..-.
T Consensus 177 -------~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as-~g~LNaPW 247 (336)
T TIGR03118 177 -------PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVAS-SGRLNAPW 247 (336)
T ss_pred -------CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEecc-CCcccCCc
Confidence 111111122334443221110 1111222223444444455666789999998754 4444322 11112223
Q ss_pred EEEEeeccCcccccCCCCCCCCcCCCCCCCcEEEEEecCCeEEEEeCCCcceeecC
Q 001538 603 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 658 (1057)
Q Consensus 603 sl~f~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~sgt~dg~i~v~d~~tg~~i~~~ 658 (1057)
.|+..+.... .+.+.+|+-=--||+|.++|..+|+.++..
T Consensus 248 G~a~APa~FG----------------~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 248 GLAIAPESFG----------------SLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred eeeeChhhhC----------------CCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 3443322211 145677766567999999999999877644
No 480
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=41.43 E-value=1.3e+02 Score=31.66 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=63.6
Q ss_pred CccccCCcEEEEcC--CCeEEEEEcCCCCCeeEEEEEcCCcEEEEEeCCC------cEEE---EECCC--Cceee----e
Q 001538 1 MCLCRDGRIKVIGG--DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN------EIQV---WSLES--RSLAC----C 63 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~--~~~e~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~------~I~V---Wdl~s--~~~l~----t 63 (1057)
||++..+.|-+|.- ..-+.++.++.-..|..|.++..|.||++.-.++ .+++ |.... ...+. .
T Consensus 32 fva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG 111 (215)
T PF14761_consen 32 FVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAG 111 (215)
T ss_pred EEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcc
Confidence 46778889999984 4677888888888999999999999999988654 3444 43321 11111 0
Q ss_pred -------------------ecCCCCEEEEEEecCCcEEEEEccCCcEEEEEE
Q 001538 64 -------------------LKWESNITAFSVISGSHFMYIGDENGLMSVIKY 96 (1057)
Q Consensus 64 -------------------l~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~ 96 (1057)
++....++|++--|-..-|++|+.+- +.+|.+
T Consensus 112 ~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~-l~lf~l 162 (215)
T PF14761_consen 112 HRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNK-LVLFTL 162 (215)
T ss_pred cccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCE-EEEEEE
Confidence 11123566777777666677777654 556654
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.69 E-value=3e+02 Score=36.49 Aligned_cols=119 Identities=13% Similarity=0.231 Sum_probs=69.1
Q ss_pred EEcCCcEEEEEeCCCcEEEEECCCCce-------ee--eecC-CCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCce
Q 001538 34 FLQNQGFLISITNDNEIQVWSLESRSL-------AC--CLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 103 (1057)
Q Consensus 34 F~~~~~~Lvs~s~d~~I~VWdl~s~~~-------l~--tl~~-~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l 103 (1057)
|.|..++|+.+.+--.|.++-+.-... .. ++.. .-.|.|+....+|+ ++.|+.||++.=+.|...++=.
T Consensus 135 Fv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf 213 (1311)
T KOG1900|consen 135 FVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWF 213 (1311)
T ss_pred chhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchh
Confidence 777777888777777777765432221 11 1222 24677888554554 5556677766555565544311
Q ss_pred ecc-----------CcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccCC
Q 001538 104 FQL-----------PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 160 (1057)
Q Consensus 104 ~~~-----------~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~~ 160 (1057)
... .+-+|+. ..++..+..||..|+..- .-+.+.+-.+.|+|..||+..+
T Consensus 214 ~~rc~Kiclt~s~ls~lvPs~-----~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 214 GSRCRKICLTKSVLSSLVPSL-----LSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hcccccccCchhHHHHhhhhh-----hcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccCC
Confidence 110 0112221 001224467899999865 3456778888999999999873
No 482
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=40.44 E-value=2.6e+02 Score=31.73 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred eEEEEEcCCcEEEEEeCCCcEEEEECCCCce---eeeec-----CCCCEEEEEEec---CCcEEEEEccCC---------
Q 001538 30 KNLEFLQNQGFLISITNDNEIQVWSLESRSL---ACCLK-----WESNITAFSVIS---GSHFMYIGDENG--------- 89 (1057)
Q Consensus 30 ~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~---l~tl~-----~~~~Ita~~~sp---~~~~l~vG~~~G--------- 89 (1057)
..|+|.||+..||+-- .|.|.+++ ..+.. +..+. .+.....++++| ...++|+....-
T Consensus 5 ~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred eEEEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Q ss_pred cEEEEEEeCCCCceeccCcccchhhhhhhcCCCC--CCCCCeEEEEeCcCCCCCeEEEEECCC
Q 001538 90 LMSVIKYDADEGKLFQLPYNISADALSEKAGFPL--LSHQPVVGVLPHPNSSGNRVLIAYENA 150 (1057)
Q Consensus 90 ~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~--~~~~~V~sI~~sP~d~g~~lli~~~dG 150 (1057)
.|.-+.++.....+....-.+.. .+. .....-..|.|.| +|.+.++.++.+
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~--------~p~~~~~~H~g~~l~fgp--DG~LYvs~G~~~ 135 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTG--------LPDTSSGNHNGGGLAFGP--DGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEE--------EES-CSSSS-EEEEEE-T--TSEEEEEEB-TT
T ss_pred eeEEEeccCCccccccceEEEEE--------eCCCCCCCCCCccccCCC--CCcEEEEeCCCC
No 483
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=39.07 E-value=5.3e+02 Score=29.70 Aligned_cols=17 Identities=6% Similarity=-0.148 Sum_probs=13.2
Q ss_pred CEEEEEEecCCCeEEEE
Q 001538 488 PVSTLSFCFINSSLAVG 504 (1057)
Q Consensus 488 ~V~~v~fspd~~~Lavg 504 (1057)
....|+|+++++.+++-
T Consensus 15 ~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCceeeECCCCCEEEEe
Confidence 56679999999877654
No 484
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.89 E-value=2.2e+02 Score=37.64 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=51.6
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCCCCeEEEEeecCCCCCCCeEEEEEeeccCcccccCCCCCCCCcCCC
Q 001538 549 FSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPV 628 (1057)
Q Consensus 549 ~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~ 628 (1057)
+..+..++.+..+....+ .+.++.-|.+.+|+.........+.. .+... .
T Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~--------------------- 243 (993)
T KOG1983|consen 194 LSLIEYESLQVLYYSPTK-ILIGFNRGLVVIKDRASKYVQSAYLP-NGQLE-------S--------------------- 243 (993)
T ss_pred ccccccccceeeeecCCC-cceeeeeeeeeehhcccccchhhccc-ccccC-------c---------------------
Confidence 334677788887776663 56677777788888765544443322 01100 1
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCccee
Q 001538 629 NPAEEVIIVLFKDAKISIVGGSSENMI 655 (1057)
Q Consensus 629 ~~d~~~L~sgt~dg~i~v~d~~tg~~i 655 (1057)
.++..++++-.||++.+||...|.++
T Consensus 244 -~~~~~~v~~h~Dgs~~fWd~s~g~~~ 269 (993)
T KOG1983|consen 244 -RDGSHFVSYHTDGSYAFWDVSSGKLQ 269 (993)
T ss_pred -cCCceEEEEEecCCEEeeecCCCcee
Confidence 66888999999999999999998654
No 485
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=38.46 E-value=8.5e+02 Score=30.06 Aligned_cols=65 Identities=6% Similarity=0.041 Sum_probs=35.3
Q ss_pred CCCeeEEEEEcCCcEEEEEeCC------CcEEEEECCCCceeeeecCC-CCEEEEEEecCCcEEEEEccCCcE
Q 001538 26 QLPYKNLEFLQNQGFLISITND------NEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLM 91 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d------~~I~VWdl~s~~~l~tl~~~-~~Ita~~~sp~~~~l~vG~~~G~v 91 (1057)
+..-..+.+..|. ..++++.| +++..+|..+.+-.....-. .....-...-++...++|..+|.-
T Consensus 322 ~r~~~~~~~~~~~-lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~ 393 (571)
T KOG4441|consen 322 PRCRVGVAVLNGK-LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK 393 (571)
T ss_pred ccccccEEEECCE-EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccc
Confidence 3334556666664 55556666 56778888777632211111 111112222357777888888743
No 486
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=37.11 E-value=85 Score=28.00 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHhhchhhHHHHHHHHH---HHhhcccccc
Q 001538 1005 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV---KTMENRKWWK 1056 (1057)
Q Consensus 1005 ~~~~~~~~~l~e~~~kl~~~~~~~~~~~~~a~~f~~~a~~~~---~~~~~~k~~~ 1056 (1057)
......++.+.|+.+|+-+=.++.++|...|++.+..|.+.. ++++.+.||+
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~ 64 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999886 5677888885
No 487
>PRK13613 lipoprotein LpqB; Provisional
Probab=36.83 E-value=7.2e+02 Score=30.85 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=83.3
Q ss_pred CeeEEEEEcCCcEEEEEeCCC-cEEEEECCCCce----eeeecCCCCEEEEEEecCCcEEEEEcc--CCcEE-EEEEeCC
Q 001538 28 PYKNLEFLQNQGFLISITNDN-EIQVWSLESRSL----ACCLKWESNITAFSVISGSHFMYIGDE--NGLMS-VIKYDAD 99 (1057)
Q Consensus 28 ~v~~L~F~~~~~~Lvs~s~d~-~I~VWdl~s~~~----l~tl~~~~~Ita~~~sp~~~~l~vG~~--~G~v~-v~~~d~~ 99 (1057)
.+...+.++++..++.++.++ .+.+..+..+.. ...+.....++.-+|++++ ++.+... +|. + ++.+..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~-~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADP-RLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCc-eEEEEEcC-
Confidence 577888888887777776655 455554432222 1111223456777777776 5555432 232 2 222222
Q ss_pred CCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEEECC---CEEEEEEcc---CCeEEEEecCCcccc
Q 001538 100 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN---ALVILWDVS---EAQIIFVGGGKDLQL 173 (1057)
Q Consensus 100 ~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~~~d---G~I~lWdl~---~~~~~~~~~~~~~~~ 173 (1057)
.+... .+...+. ...+|..+..++ +|.|++..-+. +.|.+=-+. .|. ..+.. ..
T Consensus 441 ~G~~~----~V~~~~l---------~g~~I~~lrvSr--DG~RvAvv~~~~g~~~v~va~V~R~~~G~--~~l~~--~~- 500 (599)
T PRK13613 441 DGEPV----EVRTPEL---------DGHRVVAVRVAR--DGVRVALIVEKDGRRSLQIGRIVRDAKAV--VSVEE--FR- 500 (599)
T ss_pred CCcEE----Eeecccc---------CCCEeEEEEECC--CccEEEEEEecCCCcEEEEEEEEeCCCCc--EEeec--cE-
Confidence 33322 1221111 123799999999 79999887653 455444332 121 11111 00
Q ss_pred cCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEE-cCCcEEEEeCC
Q 001538 174 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTS 230 (1057)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~-~DG~I~lWd~~ 230 (1057)
.+. .....++++.|. .++..++.|. .++...+|-++
T Consensus 501 --~l~------------------~~l~~v~~~~W~-~~~sL~Vlg~~~~~~~~v~~v~ 537 (599)
T PRK13613 501 --SLA------------------PELEDVTDMSWA-GDSQLVVLGREEGGVQQARYVQ 537 (599)
T ss_pred --Eec------------------cCCCccceeEEc-CCCEEEEEeccCCCCcceEEEe
Confidence 000 012358999999 7777666564 34456666653
No 488
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=36.63 E-value=81 Score=23.09 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.7
Q ss_pred EEEEEeCCceEEEEeCCCCeEEEEeec
Q 001538 567 KLAVGFECGRVAVLDMNLLSVLFFTDD 593 (1057)
Q Consensus 567 ~lA~G~~dG~V~vwDi~~~~~l~~~~~ 593 (1057)
.+.+++.+|.|.-+|.++|++++..+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456679999999999999999998865
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=36.24 E-value=69 Score=39.11 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=27.4
Q ss_pred CEEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001538 488 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 518 (1057)
Q Consensus 488 ~V~~v~fspd~~~Lavg~~dG~V~l~~~~~~ 518 (1057)
-+++|.-.|.++.++.|..||.+++|+|...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 5778888899999999999999999998654
No 490
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=34.23 E-value=87 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001538 555 PVRALQFTSSGAKLAVGFECGRVAVLD 581 (1057)
Q Consensus 555 ~ItsLa~S~~g~~lA~G~~dG~V~vwD 581 (1057)
.|.+++.++ +++|++...+.|++|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 578888875 4899999999999873
No 491
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=33.97 E-value=8.1e+02 Score=28.48 Aligned_cols=151 Identities=13% Similarity=0.206 Sum_probs=81.3
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCceeeeecCCCCEEEEEEec----CCcE--EEEEccC----CcEEEEEEeCCCCceec
Q 001538 36 QNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVIS----GSHF--MYIGDEN----GLMSVIKYDADEGKLFQ 105 (1057)
Q Consensus 36 ~~~~~Lvs~s~d~~I~VWdl~s~~~l~tl~~~~~Ita~~~sp----~~~~--l~vG~~~----G~v~v~~~d~~~~~l~~ 105 (1057)
|...+++....++.+.|+|+.-+. +..+. .+++.-+.+-. .++. |++.+.. ..|+++.+|.+++.|..
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 455678888888999999997554 44453 23333332221 2332 3444432 35889999987776651
Q ss_pred cCcccchhhhhhhcCCC-CCCCCCeEEEEe--CcCCCCC-eEEEEECCCEEEEEEcc---CC----eEEEEecCCccccc
Q 001538 106 LPYNISADALSEKAGFP-LLSHQPVVGVLP--HPNSSGN-RVLIAYENALVILWDVS---EA----QIIFVGGGKDLQLK 174 (1057)
Q Consensus 106 ~~~~i~~~~~~~~~g~~-~~~~~~V~sI~~--sP~d~g~-~lli~~~dG~I~lWdl~---~~----~~~~~~~~~~~~~~ 174 (1057)
..- .. .+ ......+..+++ +|. .|. ++++...+|.+..|-|. .+ ++++.|..
T Consensus 144 v~~--~~--------~p~~~~~~e~yGlcly~~~~-~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~------ 206 (381)
T PF02333_consen 144 VTD--PA--------APIATDLSEPYGLCLYRSPS-TGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV------ 206 (381)
T ss_dssp -CB--TT--------C-EE-SSSSEEEEEEEE-TT-T--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-------
T ss_pred cCC--CC--------cccccccccceeeEEeecCC-CCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC------
Confidence 100 00 00 011234667766 454 355 45556778988777774 33 34555543
Q ss_pred CCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEeCC
Q 001538 175 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 230 (1057)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~ 230 (1057)
.+.+-.+... .....|..|-+|--|+-+++.
T Consensus 207 ------------------------~sQ~EGCVVD-De~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 207 ------------------------GSQPEGCVVD-DETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp ------------------------SS-EEEEEEE-TTTTEEEEEETTTEEEEEESS
T ss_pred ------------------------CCcceEEEEe-cccCCEEEecCccEEEEEecC
Confidence 2345555556 666789999888666666654
No 492
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=33.92 E-value=7.7e+02 Score=28.23 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=41.9
Q ss_pred cCCcEEEEEcc--CCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCC-CCCeEEEEECCCEEE
Q 001538 77 SGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-SGNRVLIAYENALVI 153 (1057)
Q Consensus 77 p~~~~l~vG~~--~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d-~g~~lli~~~dG~I~ 153 (1057)
.....+|++.. ++ .++.+|..+|.+. +...... ..+..... ....+...|-. ++. +..++.+|.+.
T Consensus 195 ~~~~~vy~~~~~~~~--~~~a~~~~~G~~~---w~~~~~~---~~~~~~~~--~~~~~~~~~v~v~~~-~~~~~~~g~~~ 263 (370)
T COG1520 195 IASGTVYVGSDGYDG--ILYALNAEDGTLK---WSQKVSQ---TIGRTAIS--TTPAVDGGPVYVDGG-VYAGSYGGKLL 263 (370)
T ss_pred eecceEEEecCCCcc--eEEEEEccCCcEe---eeeeeec---ccCccccc--ccccccCceEEECCc-EEEEecCCeEE
Confidence 34556777777 66 7888998887765 2211000 00000000 00111111100 232 56777788777
Q ss_pred EEEccCCeEEEEecC
Q 001538 154 LWDVSEAQIIFVGGG 168 (1057)
Q Consensus 154 lWdl~~~~~~~~~~~ 168 (1057)
-.|..+++.+-.+..
T Consensus 264 ~l~~~~G~~~W~~~~ 278 (370)
T COG1520 264 CLDADTGELIWSFPA 278 (370)
T ss_pred EEEcCCCceEEEEec
Confidence 888888888766553
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=33.57 E-value=1.7e+02 Score=29.76 Aligned_cols=32 Identities=25% Similarity=0.529 Sum_probs=25.4
Q ss_pred CCCeEEEEEecCCC------CEEEEEEcCCcEEEEeCCC
Q 001538 199 EKEISALCWASSSG------SILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG------~~latg~~DG~I~lWd~~~ 231 (1057)
.+.|.+++|+ |-| -.|++-..+|.|.+|....
T Consensus 85 ~~~vv~~aWS-P~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWS-PSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEEC-CCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4589999999 644 2578888999999998753
No 494
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=31.76 E-value=9e+02 Score=28.33 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.1
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEeCCC
Q 001538 199 EKEISALCWASSSGSILAVGYIDGDILLWNTST 231 (1057)
Q Consensus 199 ~~~Vtsl~ws~pdG~~latg~~DG~I~lWd~~~ 231 (1057)
...|.+++.. +..+.+++-..+|+|.+|++..
T Consensus 189 ~~~I~~v~~d-~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVD-PSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEE-TTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEec-CCcCEEEEEeCCCcEEEEEEeC
Confidence 4559999999 7789999999999999999964
No 495
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.65 E-value=4.7e+02 Score=30.71 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=31.2
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCceEEEEeCC
Q 001538 549 FSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 583 (1057)
Q Consensus 549 ~~~h~~~ItsLa~S~~g~~lA~G~~dG~V~vwDi~ 583 (1057)
-+...++|.++.||+|.+.||+--.+.+|-+++..
T Consensus 62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI 96 (657)
T ss_pred eecCCCceeEEEeccCcceEEEEecCceEEEEecC
Confidence 33467899999999999999999999999999984
No 496
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=31.60 E-value=1.3e+03 Score=29.97 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred CccccCCcEEEEcCCCeEEE------------EEcCCCCCeeEEEE---EcCCcEEEEEeCCCcEEEEECCC-------C
Q 001538 1 MCLCRDGRIKVIGGDGIEGL------------LISPSQLPYKNLEF---LQNQGFLISITNDNEIQVWSLES-------R 58 (1057)
Q Consensus 1 ~vgt~dG~I~v~g~~~~e~~------------~~~~~~~~v~~L~F---~~~~~~Lvs~s~d~~I~VWdl~s-------~ 58 (1057)
++.|..|++..+....+... +.......|..+.- ..+..+|+.++.+|.++-.++.. +
T Consensus 550 llfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G 629 (800)
T TIGR01063 550 LFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNG 629 (800)
T ss_pred EEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCC
Q ss_pred ceeeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCC
Q 001538 59 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 138 (1057)
Q Consensus 59 ~~l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d 138 (1057)
.....+..+..+..+......+.+++.+..| +++.+...+-... ...-..... ........|+++..-.
T Consensus 630 ~~aiklke~D~lv~v~~~~~~d~lll~Ts~G--r~~r~~v~eIp~~--gr~~~Gv~~-----i~L~~~E~Vv~~~~v~-- 698 (800)
T TIGR01063 630 IIAIKLDDGDELISVRLTSGDDEVMLGSKNG--KAVRFPEEDVRPM--GRAARGVRG-----IKLKNEDFVVSLLVVS-- 698 (800)
T ss_pred cccccCCCCCEEEEEEEeCCCCEEEEEECCC--cEEEEEhhhcCCc--CCCCCCeec-----ccCCCCCEEEEEEEec--
Q ss_pred CCCeEEEEECCCEEEEEEccCCeEEE--EecCCcccccCCccCCCCCCCCCcccCCCCCCCCC-CCeEEEEEecCCCCEE
Q 001538 139 SGNRVLIAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE-KEISALCWASSSGSIL 215 (1057)
Q Consensus 139 ~g~~lli~~~dG~I~lWdl~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~Vtsl~ws~pdG~~l 215 (1057)
+...+++++.+|.++...+.+-.... ..+...+.+.. . ..+..+... .+...+
T Consensus 699 ~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~-----------------------~~d~lv~~~~v-~~~~~v 754 (800)
T TIGR01063 699 EESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITD-----------------------RNGQVVGAIAV-DDDDEL 754 (800)
T ss_pred cccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccC-----------------------CCCeEEEEEEe-cCCCeE
Q ss_pred EEEEcCCcEEEEeCCC
Q 001538 216 AVGYIDGDILLWNTST 231 (1057)
Q Consensus 216 atg~~DG~I~lWd~~~ 231 (1057)
+..+.+|.+..+++..
T Consensus 755 ~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 755 MLITSAGKLIRTSVQD 770 (800)
T ss_pred EEEecCCeEEEeeHhh
No 497
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=31.33 E-value=1e+03 Score=30.51 Aligned_cols=115 Identities=10% Similarity=0.102 Sum_probs=66.7
Q ss_pred eeEEEEEcCCcEEEEEeCCCcEEEEECCCCce-eeeecCCCCEEEEEEecCCcEEEEEccCCcEEEEEEeCCCCceeccC
Q 001538 29 YKNLEFLQNQGFLISITNDNEIQVWSLESRSL-ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 107 (1057)
Q Consensus 29 v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~-l~tl~~~~~Ita~~~sp~~~~l~vG~~~G~v~v~~~d~~~~~l~~~~ 107 (1057)
+..-.+.++..+++..+.+|.|+--.+..-.. ...+..+..+..+......+.+++.+..| +++.+...
T Consensus 498 i~~edlI~~e~~lVllTk~GyIKR~~l~~f~~~aikLke~D~Lv~v~~~~t~d~LllfT~~G--rv~r~~~~-------- 567 (742)
T PRK05561 498 IDEEALIPDEPVTVVLSKKGWVRRAKGHSIDASGLSFKEGDSLLFAFEARTTDKLLLFTSTG--RVYSLPVH-------- 567 (742)
T ss_pred cchhhcccCcceEEEEecCCEEEeccchhhhhhccccCCCCeEEEEEEecCCCeEEEEECCC--cEEEeEHH--------
Confidence 33345578888899999999998777654222 22333345666666677788888889999 45544332
Q ss_pred cccchhhhhhhcCC------CCCCCCCeEEEEeCcCCCCCeEEEEECCCEEEEEEccC
Q 001538 108 YNISADALSEKAGF------PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 159 (1057)
Q Consensus 108 ~~i~~~~~~~~~g~------~~~~~~~V~sI~~sP~d~g~~lli~~~dG~I~lWdl~~ 159 (1057)
.|+.. . +.|. .-.....|+++..-. ++..++++..+|.++--.+.+
T Consensus 568 -eIP~g-r--a~Gv~i~~~i~L~~gE~Iv~~~~~~--~~~~lllvT~~G~~KRt~lse 619 (742)
T PRK05561 568 -ELPSA-R--GDGEPLTGLVDLAPGEEIVHVLAFD--PDQKLLLASSAGYGFVVTLED 619 (742)
T ss_pred -hCCCc-C--CCCcChhhhcCCCCCceEEEEEEEc--CCcEEEEEECCCcEEEEEhhh
Confidence 22210 0 1111 112233455444322 233588888899887666653
No 498
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=28.83 E-value=8.5e+02 Score=27.17 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=36.7
Q ss_pred cEEEEEeCCCcEEEEecCC--CceeEEeecccceeeeeecCCCCCEEEEEEecCCCeEEE-EecCccEEEEEecC
Q 001538 446 RVYLAGYHDGSVRIWDATY--PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV-GNEFGLVYIYNLNG 517 (1057)
Q Consensus 446 ~~liTG~~DGtVriWd~~~--~~l~~l~~l~~~v~~i~l~~~~~~V~~v~fspd~~~Lav-g~~dG~V~l~~~~~ 517 (1057)
+.++-|.++|-..+. .+. ..+..+ .+..+|+++...+.-+.|++ ++....+++|++..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl-------------~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKL-------------IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEe-------------cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence 578889999976554 443 222111 12348999999887776655 33344599999843
No 499
>PRK10115 protease 2; Provisional
Probab=28.80 E-value=1.2e+03 Score=29.61 Aligned_cols=113 Identities=9% Similarity=0.107 Sum_probs=0.0
Q ss_pred EEEEEEecCCcEEEEEccCC---cEEEEEEeCCCCceeccCcccchhhhhhhcCCCCCCCCCeEEEEeCcCCCCCeEEEE
Q 001538 70 ITAFSVISGSHFMYIGDENG---LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 146 (1057)
Q Consensus 70 Ita~~~sp~~~~l~vG~~~G---~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~sP~d~g~~lli~ 146 (1057)
+..+.++|++++|+.+...+ .-.++.+|..++... +-.+.. .-..++|.| +++.|+..
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~~i~~---------------~~~~~~w~~--D~~~~~y~ 189 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY--PELLDN---------------VEPSFVWAN--DSWTFYYV 189 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC--CccccC---------------cceEEEEee--CCCEEEEE
Q ss_pred ECCC------EEEEEEccCC--eEEEEecCCcccccCCccCCCCCCCCCcccCCCCCCCCCCCeEEEEEecCCCCEEEEE
Q 001538 147 YENA------LVILWDVSEA--QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 218 (1057)
Q Consensus 147 ~~dG------~I~lWdl~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdG~~latg 218 (1057)
..+. .|.+|++.++ +-...+... .....-..|.+.|+.+++..
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~-----------------------------~~~~~~~~~~s~d~~~l~i~ 240 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPASQDELVYEEK-----------------------------DDTFYVSLHKTTSKHYVVIH 240 (686)
T ss_pred EecCCCCCCCEEEEEECCCChhHCeEEEeeC-----------------------------CCCEEEEEEEcCCCCEEEEE
Q ss_pred EcCC---cEEEEeCC
Q 001538 219 YIDG---DILLWNTS 230 (1057)
Q Consensus 219 ~~DG---~I~lWd~~ 230 (1057)
+..+ .+.+|+..
T Consensus 241 ~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 241 LASATTSEVLLLDAE 255 (686)
T ss_pred EECCccccEEEEECc
No 500
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=28.52 E-value=1.6e+02 Score=24.50 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhHHHHhhchhhHHHHHHHHHHHhhccc
Q 001538 1004 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRK 1053 (1057)
Q Consensus 1004 ~~~~~~~~~~l~e~~~kl~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k 1053 (1057)
-..+..+...|.+-.|.|++++.+..++.+. -..++.++++|+.||
T Consensus 21 ~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~----l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 21 EEIGAATLEDLRSQREQLKRVRDKLDDIDSN----LPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHccC
Confidence 3567778899999999999999999988765 467888898888765
Done!