Query 001538
Match_columns 1057
No_of_seqs 344 out of 2755
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 16:12:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001538.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_840-843//hhsearch_pdb/001538hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 614.0 78.0 750 2-862 34-844 (902)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 351.5 54.5 481 20-657 609-1122(1249)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 347.2 48.5 587 2-797 632-1249(1249)
4 1nr0_A Actin interacting prote 1.0 1 1 342.5 64.5 540 6-796 38-610 (611)
5 1nr0_A Actin interacting prote 1.0 1 1 335.2 53.0 410 26-653 18-481 (611)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 331.9 64.9 546 23-834 13-568 (577)
7 2ymu_A WD-40 repeat protein; u 1.0 1 1 329.8 64.0 464 2-657 33-503 (577)
8 1pgu_A Actin interacting prote 1.0 1 1 318.8 50.9 537 6-796 38-613 (615)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 315.1 62.7 583 21-803 12-738 (902)
10 1pgu_A Actin interacting prote 1.0 1 1 291.2 55.6 545 24-834 16-602 (615)
No 1
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=613.98 Aligned_cols=750 Identities=14% Similarity=0.163 Sum_probs=534.5
Q ss_pred CCCCCCCEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCE
Q ss_conf 21147839999389939999939998845999972996999996899299997899924665148998799999149868
Q 001538 2 CLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHF 81 (1057)
Q Consensus 2 vgt~~G~I~v~g~~~ve~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~t~~~~~~Ita~~~s~~~~~ 81 (1057)
+|+.||.|+||+..+.+.++..++..+|..|+|++ +.+|++++.|++|+|||+.+++++.++.+++.|++++++|++++
T Consensus 34 sgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~ 112 (902)
T 2oaj_A 34 IATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDW 112 (902)
T ss_dssp EEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSE
T ss_pred EEECCCEEEEEECCCCEEEEECCCCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCE
T ss_conf 99297989999689947999868999779999908-98899998959599998999968999748998799998799998
Q ss_pred EEEECCCCCEEEEEEECCCCCEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCE
Q ss_conf 99972699599999828998011067012621121002889889879599970769999969999979989999766884
Q 001538 82 MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 161 (1057)
Q Consensus 82 l~vG~~~G~I~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~~llia~~dG~I~lwdl~~~~ 161 (1057)
+++|+.+|.|++|+++ .+++. +|.++..+.... ....|..+|.+|+|+|.+ +..+++++.+|.| +||+.+++
T Consensus 113 l~sgs~dg~V~lwd~~--~~~~~--~~~i~~~~~~~~--~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~ 184 (902)
T 2oaj_A 113 MLIGLQNGSMIVYDID--RDQLS--SFKLDNLQKSSF--FPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENE 184 (902)
T ss_dssp EEEEETTSCEEEEETT--TTEEE--EEEECCHHHHHT--CSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTE
T ss_pred EEEECCCCCEEEEECC--CCCCC--CCEECCCCCCCC--CCCCCCCCEEEEEECCCC-CCEEEEEECCCCE-EEECCCCC
T ss_conf 9999499929999999--99626--503043210002--544578973899976699-9989999189849-99877896
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC--CCC
Q ss_conf 999936776434577457999899885458777897889737999824899979999748949999279998668--877
Q 001538 162 IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK--GQQ 239 (1057)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdg~~ivtg~~DGsI~iWdi~~~~~~~--~~~ 239 (1057)
++..+.+. .|+.++++.... .....+...|++++|+ |+|.+|++|+.||+|++||+.++.... ...
T Consensus 185 ~~~~~~~~----------~~~g~~~~~~~~-~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 185 IKQSFIYE----------LPPFAPGGDFSE-KTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp EEEEECCC----------BCTTCCCSTTCC-CTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred EEEEEECC----------CCCCCCCCCCCC-CCCCCCCCCEEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEEEEC
T ss_conf 57998335----------577677765443-3234567776899985-99999999989993999987899688888501
Q ss_pred CC-CCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCC-CCEEEEEECCCCC------------CCC
Q ss_conf 78-888502322255568864899993126767889996399954878899-6548999848534------------554
Q 001538 240 TG-SRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGS-EEVLTVLSLEWSS------------GME 305 (1057)
Q Consensus 240 ~~-~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~Gg~~~~~-~~~ltvl~l~~~~------------~~~ 305 (1057)
.. ...+..........+..+|..+.|++.. +++++.++++|+.+.+. .+.+.+++++.+. .+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~---~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~ 329 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCEN---NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA 329 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECS---STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECC---CCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHC
T ss_conf 2345787776788885556774579997349---9988789996887777888528999547898755542556546641
Q ss_pred CCEEEEEEEECCCCCCCEEEEEECCCC--CCCCCCEEEEEECCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 430113453158774017999105998--888884079998179816796262022220024789998984365114778
Q 001538 306 NLRCVSRVDITLTGSFADMILLSSAGA--TVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 383 (1057)
Q Consensus 306 ~~k~~~~~~l~~~~~i~d~~~~p~~~~--~g~~~~~~lvvl~~~G~l~~~D~~~~~~~l~~~~g~~~~~~~~~p~~l~~~ 383 (1057)
.+++...+.+...+.+.++.++++.++ .|.+++..+++++.+|+|++||.. .|.....+...+..+..|
T Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~---------~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP---------SGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT---------TCCEECCGGGSCGGGTTB
T ss_pred CCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECC---------CCCCCCCCCCCCCCCCCC
T ss_conf 74522787418999547999977889886778785069999179848999789---------998556555689852235
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECC
Q ss_conf 99625999986058987502367898501235888777887688778888877754468988299999679839999668
Q 001538 384 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 463 (1057)
Q Consensus 384 ~~~vt~~~~~s~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGsVriWD~~ 463 (1057)
++.|+++++...+. ..|+....... ...|++.||......+ ++++++++++||+.||+||+||+.
T Consensus 401 ~~~v~~~~~s~~~~-----~~w~~~~~~~~---------~~~~~l~G~~~~v~sv-~~spdg~~laSgs~DgtVrlWd~~ 465 (902)
T 2oaj_A 401 RPLATTSMAASVPN-----KLWLGALSAAQ---------NKDYLLKGGVRTKRQK-LPAEYGTAFITGHSNGSVRIYDAS 465 (902)
T ss_dssp TTBEEEEEEEEEEH-----HHHHHHHHTTB---------CCCCSCCCSBCCCCCC-CCCSEEEEEEEEETTSEEEEEESS
T ss_pred CCCEEEEEEEECCH-----HHHHHHHHCCC---------CCCCCCCCCCCCCCCC-CCCCCCCEEEEECCCCCEEEEECC
T ss_conf 89724899997499-----99988886046---------9997545785778753-336667589996589838999787
Q ss_pred CCCEEEEEECCCCEEEEEEC-----CCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCC----------EEE--
Q ss_conf 99616886114520012204-----9998979999960899699993586099999368877641----------255--
Q 001538 464 YPVFKLICALDAEVQGIEVA-----GSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN----------FLF-- 526 (1057)
Q Consensus 464 ~~~l~~l~~l~~~v~~i~l~-----~~~~~V~~i~fs~~~~~Lavg~~dG~V~i~~~~~~~~~~~----------~~~-- 526 (1057)
.+.+. ...+.++++. +|...|++|+|+|++++||+|+.||+|+||++.+....+. ..+
T Consensus 466 ~g~~~-----~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 540 (902)
T 2oaj_A 466 HGDIQ-----DNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRR 540 (902)
T ss_dssp CCTTT-----TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCS
T ss_pred CCCCC-----CCCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 76456-----7736775015413778887646999638999699994585799999248655575455778665113455
Q ss_pred --EECCCCCEEEEC------CCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC--CC-
Q ss_conf --313787168830------6985236599740797849999867998999984896099995798707999624--88-
Q 001538 527 --VLETKSEVHALP------EGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD--IS- 595 (1057)
Q Consensus 527 --~~~~~~~i~~i~------~~~g~~~~~~~~~h~~~ItsLa~S~~g~~LA~Gs~dG~i~vwDi~~~~~l~~~~~--~~- 595 (1057)
+...+.....+. .+.||+|...+.+|.++|++|+|||+| +||+|+.||+|+|||++++.+++...+ +.
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~ 619 (902)
T 2oaj_A 541 FSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISG 619 (902)
T ss_dssp CCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCC
T ss_conf 13467965432242368988777601469998688867799964876-89999589769999888983999702467264
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEC---CCCCEEECCC--CCCCCCCEEEE
Q ss_conf 999884898983214764466899997776788999729999726871999928---9855011376--53478524699
Q 001538 596 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG---SSENMISSSP--WHLKKKVIAIS 670 (1057)
Q Consensus 596 g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~~gt~dg~i~i~d~---~tg~~i~~~~--i~p~~~~~~~~ 670 (1057)
+|...|++++|+.+... +|+|++.+|++|+.|++|++||+ .+|+.+.... ...++...++.
T Consensus 620 gh~~~V~sv~Fs~~~~~--------------~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~ 685 (902)
T 2oaj_A 620 AQSACVTCIEFVIMEYG--------------DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHK 685 (902)
T ss_dssp SCCCCEEEEEEEEEECT--------------TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCE
T ss_pred CCCCCEEEEEEEEEECC--------------CCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEE
T ss_conf 66661399999998417--------------8987633899995687399999955899868999667244078896479
Q ss_pred EEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCC
Q ss_conf 99513888989740000000000137999999887546887554344554345799889956999835815786324300
Q 001538 671 MEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSVI 750 (1057)
Q Consensus 671 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~se~~ir~~s~~~~~ 750 (1057)
+..++.. .+....+.. ...+.++.+..+++++|+|+|+.||+|++++
T Consensus 686 i~~~~~~----------------------------~~~~~~a~~---~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~-- 732 (902)
T 2oaj_A 686 IDAFSKE----------------------------TKSSCLATI---PKMQNLSKGLCIPGIVLITGFDDIRLITLGK-- 732 (902)
T ss_dssp EEEEETT----------------------------TCCBCBCBH---HHHHGGGGTCCCCEEEEEECSSEEEEECTTC--
T ss_pred EEEEECC----------------------------CCCCCCCCH---HHHHCCCCCCCCCEEEEEEECCCEEEEECCC--
T ss_conf 9858668----------------------------797366887---8972557788777399999354059996753--
Q ss_pred CCCCEEEEEECCCCCCEEEEE--EE------ECCCEEEEEEEEEECCEEEECCCCHHHCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 256403664206875311366--65------1796169999975084899218970000112323222200066443221
Q 001538 751 QGNNKTVQKVKHKNRCCWAST--IE------KDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTI 822 (1057)
Q Consensus 751 ~g~~k~~~K~~~~~~~~~~~~--~~------~~~~~~~l~~l~~~G~i~i~SlP~L~~~~~~~l~~~~~~~~~~~~~~~~ 822 (1057)
.|++||. +..+||++.+ |. ...++++|++++++|.|+++|||+|+++++.+++.. ...++.+..
T Consensus 733 ---~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~----~~~~~~~~~ 804 (902)
T 2oaj_A 733 ---SKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFP----IAAKYITES 804 (902)
T ss_dssp ---CCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSC----CCHHHHTTC
T ss_pred ---CCCEEEE-CCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHCCCCCC----CCCCCCCCE
T ss_conf ---3512367-25620144777887013555446736999992799599997856477841658860----244643202
Q ss_pred CCC-CCCEEEECC-CEEEEEEEECCCCCEECCCCCCCEEECH
Q ss_conf 136-862999938-3349999420777310147876113001
Q 001538 823 SAD-NGQITLANG-SEVAFVNLLAGENEFSILESSPCLHDKV 862 (1057)
Q Consensus 823 ~~s-~G~i~l~~~-~e~~~~s~~~~~~~~~~~es~~~l~~~~ 862 (1057)
|++ +|+++.+.+ +|+++++++.....++ -....||.+.
T Consensus 805 ~~~~~G~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~l~~~~ 844 (902)
T 2oaj_A 805 SVLRNGDIAIRVSEFQASLFSTVKEQDTLA--PVSDTLYING 844 (902)
T ss_dssp EECTTSCEEEECSSSEEEEEEEESCCCCCC--CCCCBCCCTT
T ss_pred EECCCCCEEEEECHHHEEEEEEECCCCCCC--CCCCEEECCC
T ss_conf 896898899982702648999974777778--8774342787
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=351.52 Aligned_cols=481 Identities=11% Similarity=0.065 Sum_probs=277.1
Q ss_pred EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCEEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 9993999884599997299699999689929999789992466514-899879999914986899972699599999828
Q 001538 20 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDA 98 (1057)
Q Consensus 20 ~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~t~~-~~~~Ita~~~s~~~~~l~vG~~~G~I~v~~~d~ 98 (1057)
+....+..+|.+++|++++.+|++++.|++|+|||+.+++.+.++. +.+.|++++++|++.++++|+.+|.|++|++..
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
T ss_conf 78716666489999879999899994889499999899978887606777789999926999899981899599987799
Q ss_pred CCCCEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf 99801106701262112100288988987959997076999996999997998999976688499993677643457745
Q 001538 99 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVV 178 (1057)
Q Consensus 99 ~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~~llia~~dG~I~lwdl~~~~~~~~~~~~~~~~~~~~~ 178 (1057)
+++. ..+ ..|..+|.++.|+|..++..+++++.||.|++||+.+++.+..+.+ |
T Consensus 689 --~~~~---~~~------------~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~---------h 742 (1249)
T 3sfz_A 689 --GKLV---HTY------------DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG---------H 742 (1249)
T ss_dssp --CCEE---EEE------------ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC---------C
T ss_pred --CCEE---EEE------------CCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECC---------C
T ss_conf --9368---999------------5899737999984089965999980897099998999634220127---------7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 79998998854587778978897379998248999799997489499992799986688777888850232225556886
Q 001538 179 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRL 258 (1057)
Q Consensus 179 ~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdg~~ivtg~~DGsI~iWdi~~~~~~~~~~~~~~~~i~kl~l~~~~~~~ 258 (1057)
...|++++|+ |+|..+++++.||.|++||+.++.......... ..............
T Consensus 743 --------------------~~~v~~~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 799 (1249)
T 3sfz_A 743 --------------------TNSVNHCRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKR--FFLSSEDPPEDVEV 799 (1249)
T ss_dssp --------------------SSCEEEEEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC--CC--------CCCC
T ss_pred --------------------CCCEEEEEEE-CCCCEEEEEECCCEEEEEECCCCCCCCEECCCC--CCCCCCCCCCCCCC
T ss_conf --------------------7978899992-599989999789859999688886553020232--10246776445650
Q ss_pred CEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 48999931267678899963999548788996548999848534554430113453158774017999105998888884
Q 001538 259 PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHK 338 (1057)
Q Consensus 259 pI~~l~w~~~~~~~~~~~~~Llv~Gg~~~~~~~~ltvl~l~~~~~~~~~k~~~~~~l~~~~~i~d~~~~p~~~~~g~~~~ 338 (1057)
.+..+.|+. ++..++.++. +.+.+|++.. ..........+...+..+.+.|...
T Consensus 800 ~v~~~~~s~--------dg~~l~~~~~-----~~v~~~d~~~------~~~~~~~~~~~~~~v~~~~~sp~~~------- 853 (1249)
T 3sfz_A 800 IVKCCSWSA--------DGDKIIVAAK-----NKVLLFDIHT------SGLLAEIHTGHHSTIQYCDFSPYDH------- 853 (1249)
T ss_dssp CBCCCCBCT--------TSSEEEEEET-----TEEEEEETTT------CCEEEEEECSSSSCCCEEEECSSTT-------
T ss_pred EEEEEEECC--------CCCEEEEECC-----CCEEEEEECC------CCCEEEECCCCCCCEEEEEECCCCC-------
T ss_conf 179999978--------9988999758-----9599999568------9723577478777607999827888-------
Q ss_pred EEEEEECCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC------CCCCHHHHHHHHHHC
Q ss_conf 07999817981679626202222002478999898436511477899625999986058------987502367898501
Q 001538 339 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPF------GGHSSKGLSEIATFT 412 (1057)
Q Consensus 339 ~~lvvl~~~G~l~~~D~~~~~~~l~~~~g~~~~~~~~~p~~l~~~~~~vt~~~~~s~~~------~~~~~~~w~~~~~~~ 412 (1057)
.+++.+.+|.+.+||.... .....+..|...|+++.|.++++ .+..+..|+......
T Consensus 854 -~l~~~~~dg~v~vwd~~~~----------------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 854 -LAVIALSQYCVELWNIDSR----------------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp -EEEEECSSSCEEEEETTTT----------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred -EEEEEECCCEEEEEECCCC----------------CEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
T ss_conf -8999947986999986789----------------56532278766568999989999899995897289887466520
Q ss_pred CCCC-----------------------CCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 2358-----------------------887--7-7887688778888877754468988299999679839999668996
Q 001538 413 KLHS-----------------------SHT--Q-AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV 466 (1057)
Q Consensus 413 ~~~~-----------------------~~~--~-~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGsVriWD~~~~~ 466 (1057)
.... ... . .....+..... .... ...++++++.+++|+.||.|++||...+.
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~-~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE-AQVS-CCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECC-SCEE-EEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred EEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCC-CCEE-EEEECCCCCEEEEECCCCCEEEEECCCCC
T ss_conf 102113310368975998689981377624898447650897256-7278-99995899779998699988999757872
Q ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEECCCCCCEEE
Q ss_conf 16886114520012204999897999996089969999358609999936887764125531378716883069852365
Q 001538 467 FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCR 546 (1057)
Q Consensus 467 l~~l~~l~~~v~~i~l~~~~~~V~~i~fs~~~~~Lavg~~dG~V~i~~~~~~~~~~~~~~~~~~~~~i~~i~~~~g~~~~ 546 (1057)
. +.. +.+|...|++++|+|++..|++++.||.|++|++.....
T Consensus 995 ~--~~~---------~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~-------------------------- 1037 (1249)
T 3sfz_A 995 V--FSS---------GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-------------------------- 1037 (1249)
T ss_dssp C--EEE---------CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE--------------------------
T ss_pred E--EEE---------CCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCE--------------------------
T ss_conf 3--443---------036777168999989999899986998799998799966--------------------------
Q ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99740797849999867998999984896099995798707999624889998848989832147644668999977767
Q 001538 547 AVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREV 626 (1057)
Q Consensus 547 ~~~~~h~~~ItsLa~S~~g~~LA~Gs~dG~i~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~ 626 (1057)
..+..|...|++++|++++ .+++++.||.|++||+.++.++..... |..+|++++|+
T Consensus 1038 ~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~s------------------- 1094 (1249)
T 3sfz_A 1038 VFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTC---HQGTVLSCAIS------------------- 1094 (1249)
T ss_dssp ECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEEC---CSSCCCCEEEC-------------------
T ss_pred EEEECCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCEEEEECC---CCCCEEEEEEC-------------------
T ss_conf 8985278738999990899-589997889689988898865588746---68848999998-------------------
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCEEEC
Q ss_conf 8899972999972687199992898550113
Q 001538 627 PVNPAEEVIIVLFKDAKISIVGGSSENMISS 657 (1057)
Q Consensus 627 ~~~p~~~~L~~gt~dg~i~i~d~~tg~~i~~ 657 (1057)
|++.+|++++.||+|.+||..++..+..
T Consensus 1095 ---~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1095 ---SDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp ---SSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred ---CCCCEEEEECCCCCEEEEECCCCCEEEE
T ss_conf ---9999899984999489987898500125
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=347.22 Aligned_cols=587 Identities=10% Similarity=0.091 Sum_probs=375.7
Q ss_pred CCCCCCCEEEECCCCEEEEEECC-CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCEEEEEEECC-
Q ss_conf 21147839999389939999939-99884599997299699999689929999789992466514-8998799999149-
Q 001538 2 CLCRDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISG- 78 (1057)
Q Consensus 2 vgt~~G~I~v~g~~~ve~~~~~~-~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~t~~-~~~~Ita~~~s~~- 78 (1057)
+|+.||.|+||.....+.+.... +..+|.+++|++++.+|++++.|++|+|||+.+++.+.++. +...|++++++++
T Consensus 632 s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 711 (1249)
T 3sfz_A 632 SCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 711 (1249)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred EEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCC
T ss_conf 99488949999989997888760677778999992699989998189959998779993689995899737999984089
Q ss_pred -CCEEEEECCCCCEEEEEEECCCCCEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEC
Q ss_conf -8689997269959999982899801106701262112100288988987959997076999996999997998999976
Q 001538 79 -SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 157 (1057)
Q Consensus 79 -~~~l~vG~~~G~I~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~~llia~~dG~I~lwdl 157 (1057)
..++++|..+|.|++|+++. +... ..+ ..|..+|.+++|+| ++..+++++.||.|++||+
T Consensus 712 ~~~~l~sg~~d~~v~vwd~~~--~~~~---~~~------------~~h~~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLWDLNQ--KECR---NTM------------FGHTNSVNHCRFSP--DDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp SCCEEEEEETTSCEEEEETTS--SSEE---EEE------------CCCSSCEEEEEECS--STTEEEEEESSSEEEEEEG
T ss_pred CCEEEEEEECCCEEEEEECCC--CCHH---HEE------------CCCCCCEEEEEEEC--CCCEEEEEECCCEEEEEEC
T ss_conf 965999980897099998999--6342---201------------27779788999925--9998999978985999968
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC
Q ss_conf 68849999367764345774579998998854587778978897379998248999799997489499992799986688
Q 001538 158 SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKG 237 (1057)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdg~~ivtg~~DGsI~iWdi~~~~~~~~ 237 (1057)
.+++....+......... .. ........+.+++|+ |+|..++++. +|.+.+|++.++..
T Consensus 773 ~~~~~~~~~~~~~~~~~~----------~~------~~~~~~~~v~~~~~s-~dg~~l~~~~-~~~v~~~d~~~~~~--- 831 (1249)
T 3sfz_A 773 RSANERKSINVKRFFLSS----------ED------PPEDVEVIVKCCSWS-ADGDKIIVAA-KNKVLLFDIHTSGL--- 831 (1249)
T ss_dssp GGTEEEEEEECCCCC------------------------CCCCCBCCCCBC-TTSSEEEEEE-TTEEEEEETTTCCE---
T ss_pred CCCCCCCEECCCCCCCCC----------CC------CCCCCCCEEEEEEEC-CCCCEEEEEC-CCCEEEEEECCCCC---
T ss_conf 888655302023210246----------77------644565017999997-8998899975-89599999568972---
Q ss_pred CCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 77788885023222555688648999931267678899963999548788996548999848534554430113453158
Q 001538 238 QQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITL 317 (1057)
Q Consensus 238 ~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~Gg~~~~~~~~ltvl~l~~~~~~~~~k~~~~~~l~~ 317 (1057)
+..+ ...+..+|..+.|+. ++.++++++.+ ..+.+|++.-. ++...+ ..+
T Consensus 832 --------~~~~---~~~~~~~v~~~~~sp--------~~~~l~~~~~d----g~v~vwd~~~~------~~~~~~-~~h 881 (1249)
T 3sfz_A 832 --------LAEI---HTGHHSTIQYCDFSP--------YDHLAVIALSQ----YCVELWNIDSR------LKVADC-RGH 881 (1249)
T ss_dssp --------EEEE---ECSSSSCCCEEEECS--------STTEEEEECSS----SCEEEEETTTT------EEEEEE-CCC
T ss_pred --------EEEE---CCCCCCCEEEEEECC--------CCCEEEEEECC----CEEEEEECCCC------CEEEEC-CCC
T ss_conf --------3577---478777607999827--------88889999479----86999986789------565322-787
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHCCC--------------------CCCCCC-CCCCC
Q ss_conf 774017999105998888884079998179816796262022220024--------------------789998-98436
Q 001538 318 TGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ--------------------EKKPSV-CPVEF 376 (1057)
Q Consensus 318 ~~~i~d~~~~p~~~~~g~~~~~~lvvl~~~G~l~~~D~~~~~~~l~~~--------------------~g~~~~-~~~~~ 376 (1057)
...+..+.+.|... .+++.+.+|.+.+||........... ...... .....
T Consensus 882 ~~~v~~v~~spdg~--------~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1249)
T 3sfz_A 882 LSWVHGVMFSPDGS--------SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 953 (1249)
T ss_dssp SSCEEEEEECTTSS--------EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESS
T ss_pred CCCEEEEEECCCCC--------EEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCC
T ss_conf 66568999989999--------8999958972898874665201021133103689759986899813776248984476
Q ss_pred CCCCCCCCCCCEEEEEEECCCC------CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 5114778996259999860589------8750236789850123588877788768877888887775446898829999
Q 001538 377 PGVIPISDPIMTVAEFMLLPFG------GHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLA 450 (1057)
Q Consensus 377 p~~l~~~~~~vt~~~~~s~~~~------~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liT 450 (1057)
..........++++.++++... ...+..|+ ... +.. ...+.++...+..+ .++++++.+++
T Consensus 954 ~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d----~~~--~~~------~~~~~~h~~~v~~l-~~s~dg~~l~s 1020 (1249)
T 3sfz_A 954 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE----LPN--NRV------FSSGVGHKKAVRHI-QFTADGKTLIS 1020 (1249)
T ss_dssp CCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEE----TTT--TSC------EEECCCCSSCCCCE-EECSSSSCEEE
T ss_pred CEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEE----CCC--CCE------EEECCCCCCCEEEE-EECCCCCEEEE
T ss_conf 508972567278999958997799986999889997----578--723------44303677716899-99899998999
Q ss_pred EECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECC
Q ss_conf 96798399996689961688611452001220499989799999608996999935860999993688776412553137
Q 001538 451 GYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLET 530 (1057)
Q Consensus 451 G~~DGsVriWD~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~i~fs~~~~~Lavg~~dG~V~i~~~~~~~~~~~~~~~~~~ 530 (1057)
|+.||.|++||...+... . +.+|...|.++.|++++ .+++++.||.|++|++.....
T Consensus 1021 ~~~dg~i~vwd~~~~~~~--~----------~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~---------- 1077 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYV--F----------LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI---------- 1077 (1249)
T ss_dssp ECSSSBEEEEETTTTEEE--C----------CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC----------
T ss_pred ECCCCEEEEEECCCCCEE--E----------EECCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCE----------
T ss_conf 869987999987999668--9----------85278738999990899-589997889689988898865----------
Q ss_pred CCCEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 87168830698523659974079784999986799899998489609999579870799962488999884898983214
Q 001538 531 KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFK 610 (1057)
Q Consensus 531 ~~~i~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~LA~Gs~dG~i~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~ 610 (1057)
...+..|.+.|++++|+|+++++++|+.||+|++||+.++..+... .+|..+|++++|+
T Consensus 1078 ---------------~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l---~~h~~~v~~~~~s--- 1136 (1249)
T 3sfz_A 1078 ---------------ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL---KGHNGCVRCSAFS--- 1136 (1249)
T ss_dssp ---------------CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC---CCCSSCEEEEEEC---
T ss_pred ---------------EEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEE---CCCCCCEEEEEEC---
T ss_conf ---------------5887466884899999899998999849994899878985001255---0687767999997---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHH
Q ss_conf 76446689999777678899972999972687199992898550113765347852469999513888989740000000
Q 001538 611 NTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSA 690 (1057)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~p~~~~L~~gt~dg~i~i~d~~tg~~i~~~~i~p~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 690 (1057)
|++.+|++++.||+|++||..+++.+.... |..... ..... .
T Consensus 1137 -------------------~dg~~lat~~~dg~i~vwd~~~~~~~~~~~--~~~~~~-----~~~~~--------~---- 1178 (1249)
T 3sfz_A 1137 -------------------LDGILLATGDDNGEIRIWNVSDGQLLHSCA--PISVEE-----GTATH--------G---- 1178 (1249)
T ss_dssp -------------------SSSSEEEEEETTSCCCEEESSSSCCCCCCC--CCC------------C--------C----
T ss_pred -------------------CCCCEEEEEECCCEEEEEECCCCCEEEEEC--CCCCCC-----CCCCC--------C----
T ss_conf -------------------999989998289979999889994578851--444442-----10256--------7----
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCCCEEEE
Q ss_conf 00013799999988754688755434455434579988995699983581578632430025640366420687531136
Q 001538 691 EENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWAS 770 (1057)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~se~~ir~~s~~~~~~g~~k~~~K~~~~~~~~~~~ 770 (1057)
+ ++. .+ ..+. ...+++.+ ...|++|++.. .+.+........-..+.
T Consensus 1179 --~-------~v~------~l----------~fs~---dg~~l~s~-~g~v~vwd~~~-----g~~~~~~~~~~~~i~~~ 1224 (1249)
T 3sfz_A 1179 --G-------WVT------DV----------CFSP---DSKTLVSA-GGYLKWWNVAT-----GDSSQTFYTNGTNLKKI 1224 (1249)
T ss_dssp --S-------CCC------EE----------EECT---TSSCEEEE-SSSEEEBCSSS-----CBCCCCCCCSSCCCCCC
T ss_pred --C-------EEE------EE----------EECC---CCCEEEEC-CCEEEEEECCC-----CCEEEEEECCCCCCCEE
T ss_conf --4-------289------99----------9978---99989977-98599989888-----95004640047753279
Q ss_pred EEEECCCEEEEEEEEEECCEEEECCCC
Q ss_conf 665179616999997508489921897
Q 001538 771 TIEKDEKVCGLLLLFQTGAVQIRSLPD 797 (1057)
Q Consensus 771 ~~~~~~~~~~l~~l~~~G~i~i~SlP~ 797 (1057)
.|.. .+..|+....+|.|.++.+++
T Consensus 1225 ~~s~--dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1225 HVSP--DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp EECS--SSCCEEEECTTCCEEEECCCC
T ss_pred EECC--CCCEEEEECCCCEEEEEEECC
T ss_conf 9978--987799966881799976439
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=342.49 Aligned_cols=540 Identities=11% Similarity=0.100 Sum_probs=328.0
Q ss_pred CCCEEEECCCCEEE-EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCC--EEEEEC-CCCCEEEEEEECCCCE
Q ss_conf 78399993899399-9993999884599997299699999689929999789992--466514-8998799999149868
Q 001538 6 DGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCLK-WESNITAFSVISGSHF 81 (1057)
Q Consensus 6 ~G~I~v~g~~~ve~-~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~--~l~t~~-~~~~Ita~~~s~~~~~ 81 (1057)
++.|++|...+.+. .....+..+|..++|+|++.+|++++.|++|+|||+.+++ +..++. +.+.|++++|+|++.+
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~ 117 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 99799945787242737658998659999999996899994899789948989841566762255784489998999997
Q ss_pred EEEECCCC--CEEEEEEECCCCCEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCC-EEEEEECCCEEEEEECC
Q ss_conf 99972699--5999998289980110670126211210028898898795999707699999-69999979989999766
Q 001538 82 MYIGDENG--LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVS 158 (1057)
Q Consensus 82 l~vG~~~G--~I~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~-~llia~~dG~I~lwdl~ 158 (1057)
++++..+. ...|+.||... .. . ....|..+|.+++|+|. +. +|++++.|++|++||..
T Consensus 118 l~~~~~~~~~~~~v~~wd~~~--~~---~------------~l~gh~~~v~~v~f~p~--~~~~l~s~s~D~~v~lwd~~ 178 (611)
T 1nr0_A 118 IAAVGEGRERFGHVFLFDTGT--SN---G------------NLTGQARAMNSVDFKPS--RPFRIISGSDDNTVAIFEGP 178 (611)
T ss_dssp EEEEECCSSCSEEEEETTTCC--BC---B------------CCCCCSSCEEEEEECSS--SSCEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCCEEEEEEEECCC--CC---C------------EECCCCCCCEEEEECCC--CCEEEEEEECCCEEEEEECC
T ss_conf 999989977366999963899--76---3------------25478898369998899--98299999289809999799
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 88499993677643457745799989988545877789788973799982489997999974894999927999866887
Q 001538 159 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQ 238 (1057)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdg~~ivtg~~DGsI~iWdi~~~~~~~~~ 238 (1057)
++++...+.+ | ...|.+++|+ |+|..|++|+.||+|++||+.++......
T Consensus 179 ~~~~~~~l~~---------H--------------------~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~~~ 228 (611)
T 1nr0_A 179 PFKFKSTFGE---------H--------------------TKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVF 228 (611)
T ss_dssp TBEEEEEECC---------C--------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred CCEEEEEECC---------C--------------------CCCEEEEEEC-CCCCEEEEEECCCCEEEEECCCCCEEEEE
T ss_conf 9757665200---------2--------------------5716999997-99998999989991999889998286651
Q ss_pred CCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCC
Q ss_conf 77888850232225556886489999312676788999639995487889965489998485345544301134531587
Q 001538 239 QTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT 318 (1057)
Q Consensus 239 ~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~Gg~~~~~~~~ltvl~l~~~~~~~~~k~~~~~~l~~~ 318 (1057)
.. . .+....|..+|..+.|+. ++.++++++.| +.+++|++. ..++...+.....
T Consensus 229 ~~----~----~~~~~~h~~~V~~v~~sp--------dg~~l~s~s~D----~~v~lWd~~------~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 229 ED----D----SLKNVAHSGSVFGLTWSP--------DGTKIASASAD----KTIKIWNVA------TLKVEKTIPVGTR 282 (611)
T ss_dssp BC----T----TSSSCSSSSCEEEEEECT--------TSSEEEEEETT----SEEEEEETT------TTEEEEEEECCSS
T ss_pred CC----C----CCCCCCCCCCEEEEEECC--------CCCEEEEEECC----CEEEEEECC------CCCEEEEECCCCC
T ss_conf 36----6----432356678789999979--------99999999089----809999688------8701344047887
Q ss_pred C--CCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 7--40179991059988888840799981798167962620222200247899989843651147789962599998605
Q 001538 319 G--SFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLP 396 (1057)
Q Consensus 319 ~--~i~d~~~~p~~~~~g~~~~~~lvvl~~~G~l~~~D~~~~~~~l~~~~g~~~~~~~~~p~~l~~~~~~vt~~~~~s~~ 396 (1057)
. ....+.+ . ...++..+.+|.+.+||.... .....+..|...|+++
T Consensus 283 ~~~~~~~~~~--~--------~~~l~s~s~d~~i~~~~~~~~----------------~~~~~~~gh~~~v~~l------ 330 (611)
T 1nr0_A 283 IEDQQLGIIW--T--------KQALVSISANGFINFVNPELG----------------SIDQVRYGHNKAITAL------ 330 (611)
T ss_dssp GGGCEEEEEE--C--------SSCEEEEETTCCEEEEETTTT----------------EEEEEECCCSSCEEEE------
T ss_pred CCCEEEEEEE--C--------CCEEEEEECCCCEEEEECCCC----------------CCCEEECCCCCCEEEE------
T ss_conf 6640689997--3--------887999958996899968899----------------7446983788888999------
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC
Q ss_conf 89875023678985012358887778876887788888777544689882999996798399996689961688611452
Q 001538 397 FGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAE 476 (1057)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGsVriWD~~~~~l~~l~~l~~~ 476 (1057)
+++++++.+++|+.||+|++||+..+.... .+
T Consensus 331 -------------------------------------------~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~--~~--- 362 (611)
T 1nr0_A 331 -------------------------------------------SSSADGKTLFSADAEGHINSWDISTGISNR--VF--- 362 (611)
T ss_dssp -------------------------------------------EECTTSSEEEEEETTSCEEEEETTTCCEEE--CS---
T ss_pred -------------------------------------------EEECCCCEEEEEECCCCEEEEECCCCCEEE--EC---
T ss_conf -------------------------------------------991899989999589849999788792563--21---
Q ss_pred EEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCC----------EEEEECCC----------CCEEE
Q ss_conf 00122049998979999960899699993586099999368877641----------25531378----------71688
Q 001538 477 VQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN----------FLFVLETK----------SEVHA 536 (1057)
Q Consensus 477 v~~i~l~~~~~~V~~i~fs~~~~~Lavg~~dG~V~i~~~~~~~~~~~----------~~~~~~~~----------~~i~~ 536 (1057)
..+|...|.+++|++++ .|++++.|+.+++|+......... ...+..++ ..+..
T Consensus 363 -----~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~ 436 (611)
T 1nr0_A 363 -----PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 436 (611)
T ss_dssp -----SCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred -----CCCCCCEEEEEEECCCC-CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEE
T ss_conf -----66776507899987899-699998489668954688543565212001489970799807996999996763999
Q ss_pred ECCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 30698523659974079784999986799899998489609999579870799962488999884898983214764466
Q 001538 537 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLA 616 (1057)
Q Consensus 537 i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~LA~Gs~dG~i~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~ 616 (1057)
+. .+ . ...+ .|...+++++|+|+|++||+|+.||+|++||+.+........ .+|...|.+++|+
T Consensus 437 ~~--~~-~-~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~--~~h~~~v~~v~fs--------- 500 (611)
T 1nr0_A 437 YS--HG-K-LTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT--IVHPAEITSVAFS--------- 500 (611)
T ss_dssp EE--TT-E-EEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE--EECSSCEEEEEEC---------
T ss_pred EE--CC-C-EEEE-ECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC--CCCCCCEEEEEEC---------
T ss_conf 84--89-4-3464-068895499992899899996899739999945992224101--5778860799998---------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCC-CCEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCC
Q ss_conf 89999777678899972999972687199992898-55011376534785246999951388898974000000000013
Q 001538 617 KNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS-ENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAA 695 (1057)
Q Consensus 617 ~~~~~~~~~~~~~p~~~~L~~gt~dg~i~i~d~~t-g~~i~~~~i~p~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 695 (1057)
|++.+|++++.|++|++||..+ ++++... ....+...+.++.+-.
T Consensus 501 -------------pdg~~las~s~d~~v~~w~~~~~~~~~~~~-~~~~H~~~V~~v~fsp-------------------- 546 (611)
T 1nr0_A 501 -------------NNGAFLVATDQSRKVIPYSVANNFELAHTN-SWTFHTAKVACVSWSP-------------------- 546 (611)
T ss_dssp -------------TTSSEEEEEETTSCEEEEEGGGTTEESCCC-CCCCCSSCEEEEEECT--------------------
T ss_pred -------------CCCCEEEEECCCCCEEEEECCCCCCEEEEE-EEEECCCCEEEEEECC--------------------
T ss_conf -------------999989999489989998857787223210-2640466425899899--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCEEEEEECCCCCCCCCEEE-EEEC-CCCCCEEEEEE
Q ss_conf 799999988754688755434455434579988995699983-58157863243002564036-6420-68753113666
Q 001538 696 KNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCC-EDSVRLYSRKSVIQGNNKTV-QKVK-HKNRCCWASTI 772 (1057)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s-e~~ir~~s~~~~~~g~~k~~-~K~~-~~~~~~~~~~~ 772 (1057)
. ..+++.++ +..||+|.+..- . +.. .... .......+..|
T Consensus 547 ------d---------------------------g~~lasgs~D~~v~lW~~~~~---~-~~~~~~~~~h~~~~v~~v~f 589 (611)
T 1nr0_A 547 ------D---------------------------NVRLATGSLDNSVIVWNMNKP---S-DHPIIIKGAHAMSSVNSVIW 589 (611)
T ss_dssp ------T---------------------------SSEEEEEETTSCEEEEETTCT---T-SCCEEETTSSTTSCEEEEEE
T ss_pred ------C---------------------------CCEEEEEECCCCEEEEECCCC---C-CCCCHHHCCCCCCCEEEEEE
T ss_conf ------8---------------------------997999979972999978875---5-56326444676567118998
Q ss_pred EECCCEEEEEEEEEECCEEEECCC
Q ss_conf 517961699999750848992189
Q 001538 773 EKDEKVCGLLLLFQTGAVQIRSLP 796 (1057)
Q Consensus 773 ~~~~~~~~l~~l~~~G~i~i~SlP 796 (1057)
..+. . |+....+|.|+++++|
T Consensus 590 s~d~--~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 590 LNET--T-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EETT--E-EEEEETTSCEEEEECC
T ss_pred CCCC--E-EEEECCCCCEEEEECC
T ss_conf 5899--7-9995288778998444
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=335.20 Aligned_cols=410 Identities=12% Similarity=0.085 Sum_probs=240.8
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEE
Q ss_conf 9884599997299699999689929999789992466514-899879999914986899972699599999828998011
Q 001538 26 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 104 (1057)
Q Consensus 26 ~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~t~~-~~~~Ita~~~s~~~~~l~vG~~~G~I~v~~~d~~~~~l~ 104 (1057)
+..+..+.|+|++.+|++++ +++|++|++.++.....+. +...|++++++|++.++++|..+|.|++|++...+..+.
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEE
T ss_conf 68236976679999799679-99799945787242737658998659999999996899994899789948989841566
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECC----CEEEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 067012621121002889889879599970769999969999979----9899997668849999367764345774579
Q 001538 105 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----ALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 180 (1057)
Q Consensus 105 ~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~~llia~~d----G~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (1057)
..+ ..|..+|.+++|+| +|++|+++..+ +.|.+||. +.....+.+ |
T Consensus 97 ---~~~------------~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~g---------h-- 146 (611)
T 1nr0_A 97 ---TTI------------PVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTG---------Q-- 146 (611)
T ss_dssp ---EEE------------ECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETTT--CCBCBCCCC---------C--
T ss_pred ---EEE------------CCCCCCEEEEEECC--CCCEEEEEECCCCCEEEEEEEEC--CCCCCEECC---------C--
T ss_conf ---762------------25578448999899--99979999899773669999638--997632547---------8--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 998998854587778978897379998248999-7999974894999927999866887778888502322255568864
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 259 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdg~-~ivtg~~DGsI~iWdi~~~~~~~~~~~~~~~~i~kl~l~~~~~~~p 259 (1057)
...|.+++|+ |++. .+++|+.|++|++||..++. .+. ....|..+
T Consensus 147 ------------------~~~v~~v~f~-p~~~~~l~s~s~D~~v~lwd~~~~~-----------~~~----~l~~H~~~ 192 (611)
T 1nr0_A 147 ------------------ARAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPPFK-----------FKS----TFGEHTKF 192 (611)
T ss_dssp ------------------SSCEEEEEEC-SSSSCEEEEEETTSCEEEEETTTBE-----------EEE----EECCCSSC
T ss_pred ------------------CCCCEEEEEC-CCCCEEEEEEECCCEEEEEECCCCE-----------EEE----EECCCCCC
T ss_conf ------------------8983699988-9998299999289809999799975-----------766----52002571
Q ss_pred EEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEE------ECCCCCCCEEEEEECCCCC
Q ss_conf 8999931267678899963999548788996548999848534554430113453------1587740179991059988
Q 001538 260 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVD------ITLTGSFADMILLSSAGAT 333 (1057)
Q Consensus 260 I~~l~w~~~~~~~~~~~~~Llv~Gg~~~~~~~~ltvl~l~~~~~~~~~k~~~~~~------l~~~~~i~d~~~~p~~~~~ 333 (1057)
|..+.|+. ++.++++++.| ..+++|++.- .++...+. ..+.+.+..+.+.|...
T Consensus 193 V~~v~fsp--------dg~~las~s~D----~~i~lwd~~~------g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-- 252 (611)
T 1nr0_A 193 VHSVRYNP--------DGSLFASTGGD----GTIVLYNGVD------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-- 252 (611)
T ss_dssp EEEEEECT--------TSSEEEEEETT----SCEEEEETTT------CCEEEECBCTTSSSCSSSSCEEEEEECTTSS--
T ss_pred EEEEEECC--------CCCEEEEEECC----CCEEEEECCC------CCEEEEECCCCCCCCCCCCCEEEEEECCCCC--
T ss_conf 69999979--------99989999899----9199988999------8286651366432356678789999979999--
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCC
Q ss_conf 88884079998179816796262022220024789998984365114778996259999860589875023678985012
Q 001538 334 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 413 (1057)
Q Consensus 334 g~~~~~~lvvl~~~G~l~~~D~~~~~~~l~~~~g~~~~~~~~~p~~l~~~~~~vt~~~~~s~~~~~~~~~~w~~~~~~~~ 413 (1057)
.++..+.+|.+.+||....... ..+ .....
T Consensus 253 ------~l~s~s~D~~v~lWd~~~~~~~----------------~~~-------------~~~~~--------------- 282 (611)
T 1nr0_A 253 ------KIASASADKTIKIWNVATLKVE----------------KTI-------------PVGTR--------------- 282 (611)
T ss_dssp ------EEEEEETTSEEEEEETTTTEEE----------------EEE-------------ECCSS---------------
T ss_pred ------EEEEEECCCEEEEEECCCCCEE----------------EEE-------------CCCCC---------------
T ss_conf ------9999908980999968887013----------------440-------------47887---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEEEE
Q ss_conf 35888777887688778888877754468988299999679839999668996168861145200122049998979999
Q 001538 414 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 493 (1057)
Q Consensus 414 ~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGsVriWD~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~i~ 493 (1057)
+.... . .....++.+++++.||++++||...+.. ... +.+|...|++++
T Consensus 283 --------------~~~~~---~---~~~~~~~~l~s~s~d~~i~~~~~~~~~~--~~~---------~~gh~~~v~~l~ 331 (611)
T 1nr0_A 283 --------------IEDQQ---L---GIIWTKQALVSISANGFINFVNPELGSI--DQV---------RYGHNKAITALS 331 (611)
T ss_dssp --------------GGGCE---E---EEEECSSCEEEEETTCCEEEEETTTTEE--EEE---------ECCCSSCEEEEE
T ss_pred --------------CCCEE---E---EEEECCCEEEEEECCCCEEEEECCCCCC--CEE---------ECCCCCCEEEEE
T ss_conf --------------66406---8---9997388799995899689996889974--469---------837888889999
Q ss_pred EECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEECCCCCCEEEEEE-EECCCCEEEEEECCCCCEEEEEE
Q ss_conf 96089969999358609999936887764125531378716883069852365997-40797849999867998999984
Q 001538 494 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSSGAKLAVGF 572 (1057)
Q Consensus 494 fs~~~~~Lavg~~dG~V~i~~~~~~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~~~-~~h~~~ItsLa~S~~g~~LA~Gs 572 (1057)
|+|++++|++++.||.|++|++...... ..+ ..|...|++++|++++ .+++++
T Consensus 332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~~-------------------------~~~~~~h~~~v~~~~~s~~~-~l~s~s 385 (611)
T 1nr0_A 332 SSADGKTLFSADAEGHINSWDISTGISN-------------------------RVFPDVHATMITGIKTTSKG-DLFTVS 385 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEE-------------------------ECSSCSCSSCEEEEEECTTS-CEEEEE
T ss_pred EECCCCEEEEEECCCCEEEEECCCCCEE-------------------------EECCCCCCCEEEEEEECCCC-CEEEEE
T ss_conf 9189998999958984999978879256-------------------------32166776507899987899-699998
Q ss_pred CCCEEEEEECCCCEE-----------------------------------------EEEEECCCCCCCCEEEEEEEECCC
Q ss_conf 896099995798707-----------------------------------------999624889998848989832147
Q 001538 573 ECGRVAVLDMNLLSV-----------------------------------------LFFTDDISGSSSPIISMTWTEFKN 611 (1057)
Q Consensus 573 ~dG~i~vwDi~~~~~-----------------------------------------l~~~~~~~g~~~~V~sl~f~~~~~ 611 (1057)
.|+++++||+.+..+ +... .+...+.+++|+
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~----~~~~~v~~va~s---- 457 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV----PISYNSSCVALS---- 457 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE----ECSSCEEEEEEC----
T ss_pred CCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEE----ECCCCCEEEEEE----
T ss_conf 489668954688543565212001489970799807996999996763999848943464----068895499992----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 644668999977767889997299997268719999289855
Q 001538 612 THSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 653 (1057)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~p~~~~L~~gt~dg~i~i~d~~tg~ 653 (1057)
|++.+|++|+.|++|++||..++.
T Consensus 458 ------------------pdg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 458 ------------------NDKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp ------------------TTSCEEEEEETTSEEEEEEEETTE
T ss_pred ------------------CCCCEEEEECCCCEEEEEECCCCC
T ss_conf ------------------899899996899739999945992
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=331.87 Aligned_cols=546 Identities=13% Similarity=0.209 Sum_probs=319.1
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCC
Q ss_conf 3999884599997299699999689929999789992466514-899879999914986899972699599999828998
Q 001538 23 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 101 (1057)
Q Consensus 23 ~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~t~~-~~~~Ita~~~s~~~~~l~vG~~~G~I~v~~~d~~~~ 101 (1057)
..|..+|.+|+|+|++.+|++++.|++|+|||. +++++.++. +.+.|++++++|++++|+++..+|.|+||+++ +
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~---~ 88 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---G 88 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---S
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC---C
T ss_conf 789985799999899899999938998999979-997899996898998999998999999999698979999899---9
Q ss_pred CEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 01106701262112100288988987959997076999996999997998999976688499993677643457745799
Q 001538 102 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 181 (1057)
Q Consensus 102 ~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~~llia~~dG~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~p 181 (1057)
++. ..+ ..|..+|.+++|+| ++++|++++.++.+++|+............
T Consensus 89 ~~~---~~~------------~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~------------- 138 (577)
T 2ymu_A 89 QLL---QTL------------TGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQTLTGH------------- 138 (577)
T ss_dssp CEE---EEE------------CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCCEEEEECCC-------------
T ss_pred CEE---EEE------------ECCCCCEEEEEECC--CCCEEEEECCCCCEEECCCCCCEEEECCCC-------------
T ss_conf 789---999------------78999889999989--999899980798335202355200110477-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEE
Q ss_conf 98998854587778978897379998248999799997489499992799986688777888850232225556886489
Q 001538 182 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVI 261 (1057)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdg~~ivtg~~DGsI~iWdi~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~ 261 (1057)
...|.++.|+ |++..++++..++.+++|+..... ... ...+...+.
T Consensus 139 -----------------~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~v~ 184 (577)
T 2ymu_A 139 -----------------SSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQL------------LQT----LTGHSSSVW 184 (577)
T ss_dssp -----------------SSCEEEEEEC-TTSSCEEEEETTSEEEEECTTSCE------------EEE----EECCSSCEE
T ss_pred -----------------CCCEEEEEEE-CCCCCCEECCCCCCEECCCCCEEE------------EEE----CCCCCCCEE
T ss_conf -----------------7743555420-377632002555310000000000------------000----268776356
Q ss_pred EEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEE
Q ss_conf 99931267678899963999548788996548999848534554430113453158774017999105998888884079
Q 001538 262 VLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADL 341 (1057)
Q Consensus 262 ~l~w~~~~~~~~~~~~~Llv~Gg~~~~~~~~ltvl~l~~~~~~~~~k~~~~~~l~~~~~i~d~~~~p~~~~~g~~~~~~l 341 (1057)
.+.+.. ++.++++++.+ ..+.+|+.... ....+ ..+...+..+.+.|... .+
T Consensus 185 ~~~~~~--------~~~~l~~~~~d----~~v~~w~~~~~-------~~~~~-~~~~~~v~~~~~s~dg~--------~l 236 (577)
T 2ymu_A 185 GVAFSP--------DGQTIASASDD----KTVKLWNRNGQ-------LLQTL-TGHSSSVRGVAFSPDGQ--------TI 236 (577)
T ss_dssp EEEECT--------TSSCEEEEETT----SEEEEECTTSC-------EEEEE-ECCSSCEEEEEECTTSS--------CE
T ss_pred EEEECC--------CCCEEEEECCC----CEEEEEECCCC-------EEEEE-ECCCCCEEEEEECCCCC--------EE
T ss_conf 654169--------97789998599----98999949996-------89999-46889889999979999--------99
Q ss_pred EEECCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC------CCCCHHHHHHHHHHCCCC
Q ss_conf 99817981679626202222002478999898436511477899625999986058------987502367898501235
Q 001538 342 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPF------GGHSSKGLSEIATFTKLH 415 (1057)
Q Consensus 342 vvl~~~G~l~~~D~~~~~~~l~~~~g~~~~~~~~~p~~l~~~~~~vt~~~~~s~~~------~~~~~~~w~~~~~~~~~~ 415 (1057)
+..+.+|.+.+||... .....+..|...++++.|.++.+ ....+..|+. .
T Consensus 237 ~~~~~d~~i~~w~~~~-----------------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~----~--- 292 (577)
T 2ymu_A 237 ASASDDKTVKLWNRNG-----------------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR----N--- 292 (577)
T ss_dssp EEEETTSCEEEECTTS-----------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----T---
T ss_pred EEEECCCEEEEEECCC-----------------CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC----C---
T ss_conf 9991899899995999-----------------799998068898799999689999999959997999948----9---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 88877788768877888887775446898829999967983999966899616886114520012204999897999996
Q 001538 416 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 495 (1057)
Q Consensus 416 ~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGsVriWD~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~i~fs 495 (1057)
+... -.+.|+......+ +++++++.+++++.||+|++||.....+.. +.+|...|.+++|+
T Consensus 293 ~~~~------~~~~~h~~~v~~~-~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~------------~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 293 GQLL------QTLTGHSSSVWGV-AFSPDGQTIASASDDKTVKLWNRNGQHLQT------------LTGHSSSVWGVAFS 353 (577)
T ss_dssp SCEE------EEECCCSSCEEEE-EECTTSSEEEEEETTSCEEEEETTSCEEEE------------ECCCSSCEEEEEEC
T ss_pred CCEE------EEEECCCCCEEEE-EECCCCCEEEEEECCCEEEEEECCCCEEEE------------EECCCCCEEEEEEC
T ss_conf 9589------9970688976999-999999999999699959999699972578------------74788977999998
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 08996999935860999993688776412553137871688306985236599740797849999867998999984896
Q 001538 496 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 575 (1057)
Q Consensus 496 ~~~~~Lavg~~dG~V~i~~~~~~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~LA~Gs~dG 575 (1057)
|++..|++|+.+|.|++|+.... +...+..|...|++++|+|+|++||+|+.||
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~~~~--------------------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNRNGQ--------------------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTCC--------------------------EEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCCEEEEEECCCEEEEECCCCC--------------------------EEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 99999999969998999908997--------------------------8998527889748999989999999994999
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 09999579870799962488999884898983214764466899997776788999729999726871999928985501
Q 001538 576 RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 655 (1057)
Q Consensus 576 ~i~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~~gt~dg~i~i~d~~tg~~i 655 (1057)
.|++||.. +..+.... +|..+|++++|+ |++.+|++++.|++|.+||.. ++++
T Consensus 408 ~v~~~~~~-~~~~~~~~---~~~~~v~~~~~s----------------------~d~~~l~~~~~d~~v~~w~~~-~~~~ 460 (577)
T 2ymu_A 408 TVKLWNRN-GQLLQTLT---GHSSSVWGVAFS----------------------PDDQTIASASDDKTVKLWNRN-GQLL 460 (577)
T ss_dssp EEEEECTT-CCEEEEEE---CCSSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEETT-SCEE
T ss_pred EEEEEECC-CCEEEEEC---CCCCCEEEEEEC----------------------CCCCEEEEECCCCEEEEEECC-CCEE
T ss_conf 89999699-97898962---889975799998----------------------999999999399989999799-9889
Q ss_pred ECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 13765347852469999513888989740000000000137999999887546887554344554345799889956999
Q 001538 656 SSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLL 735 (1057)
Q Consensus 656 ~~~~i~p~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 735 (1057)
.... .+...+..+.+-. . ..+++.
T Consensus 461 ~~~~---~~~~~v~~~~~sp--------------------------d---------------------------~~~las 484 (577)
T 2ymu_A 461 QTLT---GHSSSVRGVAFSP--------------------------D---------------------------GQTIAS 484 (577)
T ss_dssp EEEE---CCSSCEEEEEECT--------------------------T---------------------------SCEEEE
T ss_pred EEEC---CCCCCEEEEEECC--------------------------C---------------------------CCEEEE
T ss_conf 9972---7899778999969--------------------------9---------------------------999999
Q ss_pred EE-CCEEEEEECCCCCCCCCEEEEEEC-CCCCCEEEEEEEECCCEEEEEEEEEECCEEEECCCCHHHCCCCCCCCEEEEC
Q ss_conf 83-581578632430025640366420-6875311366651796169999975084899218970000112323222200
Q 001538 736 CC-EDSVRLYSRKSVIQGNNKTVQKVK-HKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWN 813 (1057)
Q Consensus 736 ~s-e~~ir~~s~~~~~~g~~k~~~K~~-~~~~~~~~~~~~~~~~~~~l~~l~~~G~i~i~SlP~L~~~~~~~l~~~~~~~ 813 (1057)
++ +..||+|+.. .+.++... .... ..+..|.+ .+-.|+....+|.|++++++. +.+... .
T Consensus 485 ~~~d~~i~iw~~~------~~~~~~~~~h~~~-v~~l~~s~--dg~~l~s~~~dg~v~lwd~~~-~~~~~~--------~ 546 (577)
T 2ymu_A 485 ASDDKTVKLWNRN------GQLLQTLTGHSSS-VRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTL--------T 546 (577)
T ss_dssp EETTSEEEEEETT------SCEEEEEECCSSC-EEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEE--------E
T ss_pred EECCCEEEEECCC------CCEEEEEECCCCC-EEEEEECC--CCCEEEEEECCCEEEEEECCC-CEEEEE--------C
T ss_conf 9198979999399------9789998679999-89999918--999999998969999996999-789897--------1
Q ss_pred CCCCCCCCCCCC-CCCEEEECC
Q ss_conf 066443221136-862999938
Q 001538 814 FKANMDKTISAD-NGQITLANG 834 (1057)
Q Consensus 814 ~~~~~~~~~~~s-~G~i~l~~~ 834 (1057)
-+.+....+++| +|+.++..+
T Consensus 547 ~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEE
T ss_conf 8888878999968999999990
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=329.76 Aligned_cols=464 Identities=14% Similarity=0.209 Sum_probs=252.1
Q ss_pred CCCCCCCEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCEEEEEEECCCC
Q ss_conf 2114783999938993999993999884599997299699999689929999789992466514-899879999914986
Q 001538 2 CLCRDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSH 80 (1057)
Q Consensus 2 vgt~~G~I~v~g~~~ve~~~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~t~~-~~~~Ita~~~s~~~~ 80 (1057)
.|..||.|+||...+........+..+|.+|+|+|++.+|++++.|++|+|||+ +++++.++. +...|++++++|++.
T Consensus 33 s~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~ 111 (577)
T 2ymu_A 33 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 111 (577)
T ss_dssp EEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSS
T ss_pred EEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 993899899997999789999689899899999899999999969897999989-9978999978999889999989999
Q ss_pred EEEEECCCCCEEEEEEECCCCCEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 89997269959999982899801106701262112100288988987959997076999996999997998999976688
Q 001538 81 FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 160 (1057)
Q Consensus 81 ~l~vG~~~G~I~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~~llia~~dG~I~lwdl~~~ 160 (1057)
+++++..++.+.+|..... ... . ...+...|.++.++| ++..++....++.+.+|+....
T Consensus 112 ~l~~~~~d~~~~~~~~~~~--~~~----~------------~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 171 (577)
T 2ymu_A 112 TIASASDDKTVKLWNRNGQ--LLQ----T------------LTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQ 171 (577)
T ss_dssp EEEEEETTSCEEEEETTCC--EEE----E------------ECCCSSCEEEEEECT--TSSCEEEEETTSEEEEECTTSC
T ss_pred EEEEECCCCCEEECCCCCC--EEE----E------------CCCCCCCEEEEEEEC--CCCCCEECCCCCCEECCCCCEE
T ss_conf 8999807983352023552--001----1------------047777435554203--7763200255531000000000
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 49999367764345774579998998854587778978897379998248999799997489499992799986688777
Q 001538 161 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQT 240 (1057)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdg~~ivtg~~DGsI~iWdi~~~~~~~~~~~ 240 (1057)
........ ...|.++.|+ |++..+++++.||.|++|+....
T Consensus 172 ~~~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~~d~~v~~w~~~~~-------- 212 (577)
T 2ymu_A 172 LLQTLTGH------------------------------SSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQ-------- 212 (577)
T ss_dssp EEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEETTSEEEEECTTSC--------
T ss_pred EEEECCCC------------------------------CCCEEEEEEC-CCCCEEEEECCCCEEEEEECCCC--------
T ss_conf 00002687------------------------------7635665416-99778999859998999949996--------
Q ss_pred CCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 88885023222555688648999931267678899963999548788996548999848534554430113453158774
Q 001538 241 GSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGS 320 (1057)
Q Consensus 241 ~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~Gg~~~~~~~~ltvl~l~~~~~~~~~k~~~~~~l~~~~~ 320 (1057)
.+..+ ..+..+|..+.|+. ++.++++++.+ ..+.+|+.+.. .... ...+...
T Consensus 213 ----~~~~~----~~~~~~v~~~~~s~--------dg~~l~~~~~d----~~i~~w~~~~~-------~~~~-~~~~~~~ 264 (577)
T 2ymu_A 213 ----LLQTL----TGHSSSVRGVAFSP--------DGQTIASASDD----KTVKLWNRNGQ-------LLQT-LTGHSSS 264 (577)
T ss_dssp ----EEEEE----ECCSSCEEEEEECT--------TSSCEEEEETT----SCEEEECTTSC-------EEEE-ECCCSSC
T ss_pred ----EEEEE----ECCCCCEEEEEECC--------CCCEEEEEECC----CEEEEEECCCC-------EEEE-EECCCCC
T ss_conf ----89999----46889889999979--------99999999189----98999959997-------9999-8068898
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC---
Q ss_conf 01799910599888888407999817981679626202222002478999898436511477899625999986058---
Q 001538 321 FADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPF--- 397 (1057)
Q Consensus 321 i~d~~~~p~~~~~g~~~~~~lvvl~~~G~l~~~D~~~~~~~l~~~~g~~~~~~~~~p~~l~~~~~~vt~~~~~s~~~--- 397 (1057)
+..+.+.|... .++..+.+|.+++||... .....+..|...++++.+.++.+
T Consensus 265 v~~v~~~~d~~--------~l~~~~~d~~i~~w~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 265 VNGVAFRPDGQ--------TIASASDDKTVKLWNRNG-----------------QLLQTLTGHSSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp EEEEEECTTSS--------EEEEEETTSCEEEEETTS-----------------CEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEECCCCC--------EEEEEECCCEEEEEECCC-----------------CEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 79999968999--------999995999799994899-----------------58999706889769999999999999
Q ss_pred ---CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECC
Q ss_conf ---98750236789850123588877788768877888887775446898829999967983999966899616886114
Q 001538 398 ---GGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALD 474 (1057)
Q Consensus 398 ---~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGsVriWD~~~~~l~~l~~l~ 474 (1057)
.+..++.|+. . ..... .+.++......+ +++++++.+++|+.||.|++||..... +..
T Consensus 320 t~~~d~~i~~w~~----~---~~~~~------~~~~~~~~v~~~-~~s~~g~~l~~~~~dg~v~~~~~~~~~---~~~-- 380 (577)
T 2ymu_A 320 SASDDKTVKLWNR----N---GQHLQ------TLTGHSSSVWGV-AFSPDGQTIASASDDKTVKLWNRNGQL---LQT-- 380 (577)
T ss_dssp EEETTSCEEEEET----T---SCEEE------EECCCSSCEEEE-EECTTSSEEEEEETTSEEEEEETTCCE---EEE--
T ss_pred EEECCCEEEEEEC----C---CCEEE------EEECCCCCEEEE-EECCCCCEEEEEECCCEEEEECCCCCE---EEE--
T ss_conf 9969995999969----9---97257------874788977999-998999999999699989999089978---998--
Q ss_pred CCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEECCCCCCEEEEEEEECCC
Q ss_conf 52001220499989799999608996999935860999993688776412553137871688306985236599740797
Q 001538 475 AEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS 554 (1057)
Q Consensus 475 ~~v~~i~l~~~~~~V~~i~fs~~~~~Lavg~~dG~V~i~~~~~~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~~~~~h~~ 554 (1057)
+.+|..+|++++|+|++++|++++.|+.|++|+.... +...+..|..
T Consensus 381 -------~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~--------------------------~~~~~~~~~~ 427 (577)
T 2ymu_A 381 -------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------------------LLQTLTGHSS 427 (577)
T ss_dssp -------EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC--------------------------EEEEEECCSS
T ss_pred -------ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC--------------------------EEEEECCCCC
T ss_conf -------5278897489999899999999949998999969997--------------------------8989628899
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 84999986799899998489609999579870799962488999884898983214764466899997776788999729
Q 001538 555 PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEV 634 (1057)
Q Consensus 555 ~ItsLa~S~~g~~LA~Gs~dG~i~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 634 (1057)
.|++++|+|++++||+++.||+|++||+.+ .++.... +|..+|.+++|+ |++.+
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~---~~~~~v~~~~~s----------------------pd~~~ 481 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLT---GHSSSVRGVAFS----------------------PDGQT 481 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEE---CCSSCEEEEEEC----------------------TTSCE
T ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCC-CEEEEEC---CCCCCEEEEEEC----------------------CCCCE
T ss_conf 757999989999999993999899997999-8899972---789977899996----------------------99999
Q ss_pred EEEEECCCEEEEEECCCCCEEEC
Q ss_conf 99972687199992898550113
Q 001538 635 IIVLFKDAKISIVGGSSENMISS 657 (1057)
Q Consensus 635 L~~gt~dg~i~i~d~~tg~~i~~ 657 (1057)
|++++.|+.|++||. +++++..
T Consensus 482 las~~~d~~i~iw~~-~~~~~~~ 503 (577)
T 2ymu_A 482 IASASDDKTVKLWNR-NGQLLQT 503 (577)
T ss_dssp EEEEETTSEEEEEET-TSCEEEE
T ss_pred EEEEECCCEEEEECC-CCCEEEE
T ss_conf 999919897999939-9978999
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=318.83 Aligned_cols=537 Identities=14% Similarity=0.115 Sum_probs=259.5
Q ss_pred CCCEEEECCCCE----EEEE-ECCCCCC-EEEEEEEC--CCCEEEEEECCCCEEEEECCCC--------CEEEEEC-CCC
Q ss_conf 783999938993----9999-9399988-45999972--9969999968992999978999--------2466514-899
Q 001538 6 DGRIKVIGGDGI----EGLL-ISPSQLP-YKNLEFLQ--NQGFLISITNDNEIQVWSLESR--------SLACCLK-WES 68 (1057)
Q Consensus 6 ~G~I~v~g~~~v----e~~~-~~~~~~~-v~~L~F~~--~~~~Lvs~s~d~~I~VWdl~s~--------~~l~t~~-~~~ 68 (1057)
+|.|+||..+.- +... ...+..+ |.+++|++ ++.+|++++.|++|+|||+.++ ..+..+. +..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 98499997778877651431880578844999997967899889996489879997688876554455420001112566
Q ss_pred CEEEEEEECCCCEEEEECCCC--CEEEEEEECCCCCEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCC-EEEE
Q ss_conf 879999914986899972699--5999998289980110670126211210028898898795999707699999-6999
Q 001538 69 NITAFSVISGSHFMYIGDENG--LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLI 145 (1057)
Q Consensus 69 ~Ita~~~s~~~~~l~vG~~~G--~I~v~~~d~~~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~-~lli 145 (1057)
.|++++++|++.+++++..+. ...++.|+... .. . ....|...|.++.|+| ++. ++++
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~--~~---~------------~~~~~~~~v~~~~~~~--~~~~~l~~ 178 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--SL---G------------EVSGHSQRINACHLKQ--SRPMRSMT 178 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--EE---E------------ECCSCSSCEEEEEECS--SSSCEEEE
T ss_pred CEEEEEEECCCCEEEEECCCCCCCCEEEEEECCC--CC---E------------EEECCCCCEEEEEECC--CCCCEEEE
T ss_conf 3799999079998999316877755799997898--10---3------------1306774388999887--89968999
Q ss_pred EECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEEECCC-CCEEEEEECC
Q ss_conf 9979989999766884999936776434577457999899885458777897889---73799982489-9979999748
Q 001538 146 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK---EISALCWASSS-GSILAVGYID 221 (1057)
Q Consensus 146 a~~dG~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~Vtsl~ws~pd-g~~ivtg~~D 221 (1057)
++.+|.|++||+.+++.+..+.. | .. .|++++|+ |+ +..+++++.|
T Consensus 179 ~~~d~~v~vwd~~~~~~~~~~~~---------~--------------------~~~~~~v~~~~~~-~~~~~~l~~~~~d 228 (615)
T 1pgu_A 179 VGDDGSVVFYQGPPFKFSASDRT---------H--------------------HKQGSFVRDVEFS-PDSGEFVITVGSD 228 (615)
T ss_dssp EETTTEEEEEETTTBEEEEEECS---------S--------------------SCTTCCEEEEEEC-STTCCEEEEEETT
T ss_pred EECCCCEEEEECCCCCEEEEECC---------C--------------------CCCCCEEEEEEEC-CCCCCEEEEEECC
T ss_conf 95799599996999610132025---------6--------------------7777428999978-9778889998689
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 94999927999866887778888502322255568864899993126767889996399954878899654899984853
Q 001538 222 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 301 (1057)
Q Consensus 222 GsI~iWdi~~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~~Llv~Gg~~~~~~~~ltvl~l~~~ 301 (1057)
|.|++||+.++. .+..+......+..+|..+.|+ ++.++++++.+ ..+.+|++.
T Consensus 229 g~i~vwd~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~---------~~~~l~~~~~d----~~i~~wd~~-- 282 (615)
T 1pgu_A 229 RKISCFDGKSGE-----------FLKYIEDDQEPVQGGIFALSWL---------DSQKFATVGAD----ATIRVWDVT-- 282 (615)
T ss_dssp CCEEEEETTTCC-----------EEEECCBTTBCCCSCEEEEEES---------SSSEEEEEETT----SEEEEEETT--
T ss_pred CEEEEEECCCCC-----------EEEEECCCCCCCCCCEEEEEEC---------CCCEEEEECCC----CCEEEEECC--
T ss_conf 808999899997-----------8589525444567755899981---------89979998489----948999788--
Q ss_pred CCCCCCEEEEEEEECC---CCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 4554430113453158---7740179991059988888840799981798167962620222200247899989843651
Q 001538 302 SGMENLRCVSRVDITL---TGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPG 378 (1057)
Q Consensus 302 ~~~~~~k~~~~~~l~~---~~~i~d~~~~p~~~~~g~~~~~~lvvl~~~G~l~~~D~~~~~~~l~~~~g~~~~~~~~~p~ 378 (1057)
..++...+..+. ...+..+.+ +.. ..+++.+.+|.+++||.... ....
T Consensus 283 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~l~~~~~~g~i~~~d~~~~----------------~~~~ 333 (615)
T 1pgu_A 283 ----TSKCVQKWTLDKQQLGNQQVGVVA-TGN--------GRIISLSLDGTLNFYELGHD----------------EVLK 333 (615)
T ss_dssp ----TTEEEEEEECCTTCGGGCEEEEEE-EET--------TEEEEEETTSCEEEEETTEE----------------EEEE
T ss_pred ----CCCEEEEECCCCCCCCCCEEEEEE-CCC--------CEEEEEECCCCEEEEECCCC----------------CEEE
T ss_conf ----892787884787754571469991-899--------76999978997899988899----------------2889
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 14778996259999860589875023678985012358887778876887788888777544689882999996798399
Q 001538 379 VIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVR 458 (1057)
Q Consensus 379 ~l~~~~~~vt~~~~~s~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGsVr 458 (1057)
.+..|...++++. + ++ +++|+.||.|+
T Consensus 334 ~~~~~~~~v~~~~-------------------------------------------------~-~~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 334 TISGHNKGITALT-------------------------------------------------V-NP---LISGSYDGRIM 360 (615)
T ss_dssp EECCCSSCEEEEE-------------------------------------------------T-TT---TEEEETTSCEE
T ss_pred EEECCCCCEEEEE-------------------------------------------------E-CC---CEEECCCCEEE
T ss_conf 9947778789999-------------------------------------------------5-67---48987999599
Q ss_pred EEECCCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEC---------
Q ss_conf 99668996168861145200122049998979999960899699993586099999368877641255313---------
Q 001538 459 IWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE--------- 529 (1057)
Q Consensus 459 iWD~~~~~l~~l~~l~~~v~~i~l~~~~~~V~~i~fs~~~~~Lavg~~dG~V~i~~~~~~~~~~~~~~~~~--------- 529 (1057)
+||.. . +. .+|...|.+++| +++..|++++.||.|++|++...........+..
T Consensus 361 ~w~~~--~---~~-----------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 423 (615)
T 1pgu_A 361 EWSSS--S---MH-----------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 423 (615)
T ss_dssp ETTTT--E---EE-----------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEE
T ss_pred EEECH--H---HC-----------CCCCCCEEEEEE-CCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCEEEE
T ss_conf 98752--4---15-----------755685179997-8986799995899799988666763678469998289878999
Q ss_pred -CCCCEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEE
Q ss_conf -78716883069852365997407978499998679989999848-9609999579870799962488999884898983
Q 001538 530 -TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE-CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 607 (1057)
Q Consensus 530 -~~~~i~~i~~~~g~~~~~~~~~h~~~ItsLa~S~~g~~LA~Gs~-dG~i~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~ 607 (1057)
....+..+....+ .+...+ .+...+++++|+ +++|++|+. +|.|++||+.+..... ....+|..+|++++|+
T Consensus 424 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s 497 (615)
T 1pgu_A 424 TNDDDLLILQSFTG-DIIKSV-RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISIS 497 (615)
T ss_dssp ETTSEEEEEETTTC-CEEEEE-ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEEC
T ss_pred ECCCCEEEEECCCC-CEEEEC-CCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCC--CCCCCCCCCEEEEEEC
T ss_conf 67982699944678-665551-567872077883--88899965689869999888854353--3367765750799998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 21476446689999777678899972999972687199992898550113765347852469999513888989740000
Q 001538 608 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAE 687 (1057)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~p~~~~L~~gt~dg~i~i~d~~tg~~i~~~~i~p~~~~~~~~~~~~d~~~~~~~~~~~~ 687 (1057)
|++.+|++++.||.|++||..+++++....- .+...+..+.+......
T Consensus 498 ----------------------~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~-------- 545 (615)
T 1pgu_A 498 ----------------------PSETYIAAGDVMGKILLYDLQSREVKTSRWA--FRTSKINAISWKPAEKG-------- 545 (615)
T ss_dssp ----------------------TTSSEEEEEETTSCEEEEETTTTEEEECCSC--CCSSCEEEEEECCCC----------
T ss_pred ----------------------CCCCEEEECCCCCEEEEEECCCCCCEEEEEC--CCCCCEEEEEECCCCCC--------
T ss_conf ----------------------9999899817998599865777762467604--78871469997683234--------
Q ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCEEEEEECCCCCCCCCEEEEEECCCCCC
Q ss_conf 00000013799999988754688755434455434579988995699983-58157863243002564036642068753
Q 001538 688 QSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCC-EDSVRLYSRKSVIQGNNKTVQKVKHKNRC 766 (1057)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s-e~~ir~~s~~~~~~g~~k~~~K~~~~~~~ 766 (1057)
....+ ....+++.++ +..|++|++..- .++++...--...
T Consensus 546 ----------------------------------~~~~~-~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~h~~~ 586 (615)
T 1pgu_A 546 ----------------------------------ANEEE-IEEDLVATGSLDTNIFIYSVKRP----MKIIKALNAHKDG 586 (615)
T ss_dssp --------------------------------------C-CSCCEEEEEETTSCEEEEESSCT----TCCEEETTSSTTC
T ss_pred ----------------------------------CCCCC-CCCCEEEEECCCCCEEEEECCCC----CEECHHHHCCCCC
T ss_conf ----------------------------------53324-68888999817971999977888----5403113359430
Q ss_pred EEEEEEEECCCEEEEEEEEEECCEEEECCC
Q ss_conf 113666517961699999750848992189
Q 001538 767 CWASTIEKDEKVCGLLLLFQTGAVQIRSLP 796 (1057)
Q Consensus 767 ~~~~~~~~~~~~~~l~~l~~~G~i~i~SlP 796 (1057)
..+..|..+ +. |+....+|.|+++++.
T Consensus 587 v~~l~~s~~--~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 587 VNNLLWETP--ST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEEEEET--TE-EEEEETTSCEEEEEEC
T ss_pred EEEEEECCC--CC-EEEECCCCEEEEEEEE
T ss_conf 589997389--97-2884599639999601
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=315.11 Aligned_cols=583 Identities=12% Similarity=0.109 Sum_probs=339.8
Q ss_pred EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCC
Q ss_conf 99399988459999729969999968992999978999246651489987999991498689997269959999982899
Q 001538 21 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 100 (1057)
Q Consensus 21 ~~~~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~~~l~t~~~~~~Ita~~~s~~~~~l~vG~~~G~I~v~~~d~~~ 100 (1057)
....+...|.+|+|++++.+|++++.|++|+||+....+....+.....|++++|+| +.++++++.++.|++|+++.
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~-- 88 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS-- 88 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT--
T ss_pred CCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECC-CCEEEEEECCCEEEEEECCC--
T ss_conf 216889984899997999989999297989999689947999868999779999908-98899998959599998999--
Q ss_pred CCEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 80110670126211210028898898795999707699999699999799899997668849999367764345774579
Q 001538 101 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 180 (1057)
Q Consensus 101 ~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~~llia~~dG~I~lwdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (1057)
+++. ..+. +...|.+++|+| +++++++++.||.|++||+.++++...... ..+..
T Consensus 89 ~~~~---~~~~-------------~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~-~~~~~------ 143 (902)
T 2oaj_A 89 QKVL---TTVF-------------VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLD-NLQKS------ 143 (902)
T ss_dssp CSEE---EEEE-------------CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEEC-CHHHH------
T ss_pred CCEE---EEEC-------------CCCCEEEEEECC--CCCEEEEECCCCCEEEEECCCCCCCCCEEC-CCCCC------
T ss_conf 9689---9974-------------899879999879--999899994999299999999962650304-32100------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-CCEEEEEECCCCEEEEECCCCCCCCCCC-----CCCCCCCEEEECCCC
Q ss_conf 9989988545877789788973799982489-9979999748949999279998668877-----788885023222555
Q 001538 181 PSEGDSTFLEGISEHQPEEKEISALCWASSS-GSILAVGYIDGDILLWNTSTTASTKGQQ-----TGSRNNVVKLELSSA 254 (1057)
Q Consensus 181 p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pd-g~~ivtg~~DGsI~iWdi~~~~~~~~~~-----~~~~~~i~kl~l~~~ 254 (1057)
......+...|++++|+ |+ +..+++|+.||.| +||+.++....... +....... . ....
T Consensus 144 -----------~~~~~~h~~~V~sl~~s-p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~-~-~~~~ 208 (902)
T 2oaj_A 144 -----------SFFPAARLSPIVSIQWN-PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS-E-KTNE 208 (902)
T ss_dssp -----------HTCSSSCCCCCCEEEEE-TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC-C-CTTS
T ss_pred -----------CCCCCCCCCCEEEEEEC-CCCCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCC-C-CCCC
T ss_conf -----------02544578973899976-6999989999189849-998778965799833557767776544-3-3234
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEE-----C------------C
Q ss_conf 6886489999312676788999639995487889965489998485345544301134531-----5------------8
Q 001538 255 ERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI-----T------------L 317 (1057)
Q Consensus 255 ~~~~pI~~l~w~~~~~~~~~~~~~Llv~Gg~~~~~~~~ltvl~l~~~~~~~~~k~~~~~~l-----~------------~ 317 (1057)
.|..+|..+.|+. ++.++++|+.| ..+.+|++.- .+++....+ + .
T Consensus 209 ~h~~~V~~v~fsp--------dg~~lasgs~D----g~i~lWd~~~------g~~~~~r~l~~~~~~~~~~~~~~~~~~~ 270 (902)
T 2oaj_A 209 KRTPKVIQSLYHP--------NSLHIITIHED----NSLVFWDANS------GHMIMARTVFETEINVPQPDYIRDSSTN 270 (902)
T ss_dssp CBCCCEEEEEECT--------TSSEEEEEETT----CCEEEEETTT------CCEEEEECSSCSCTTSCCTTCCCCCSSC
T ss_pred CCCCCEEEEEECC--------CCCEEEEEECC----CEEEEEECCC------CCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 5677768999859--------99999999899----9399998789------9688888501234578777678888555
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEEC-CC-----CEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 7740179991059988888840799981-79-----81679626202222002478999898436511477899625999
Q 001538 318 TGSFADMILLSSAGATVGNHKADLFVLT-SP-----GQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAE 391 (1057)
Q Consensus 318 ~~~i~d~~~~p~~~~~g~~~~~~lvvl~-~~-----G~l~~~D~~~~~~~l~~~~g~~~~~~~~~p~~l~~~~~~vt~~~ 391 (1057)
.+.+..+.+.+...+ +...+++.+ .+ +.+.+|+.... +.+
T Consensus 271 ~~~V~~v~w~~~~~p----d~~~ll~sg~~~~~~~~~~v~~~~~~~~--------------------------~~~---- 316 (902)
T 2oaj_A 271 AAKISKVYWMCENNP----EYTSLLISHKSISRGDNQSLTMIDLGYT--------------------------PRY---- 316 (902)
T ss_dssp CCEEEEEEEEECSST----TEEEEEEEEECSTTSSCCCEEEEEEEEC--------------------------CCG----
T ss_pred CCCEEEEEEEECCCC----CCCEEEEECCCCCCCCCCEEEEEECCCC--------------------------CCC----
T ss_conf 677457999734999----8878999688777788852899954789--------------------------875----
Q ss_pred EEECCCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCCC--CCCCCCCCCCC------CCCCCCCEEEEEECCCCEEEEEC
Q ss_conf 9860589875023678985012-358887778876887--78888877754------46898829999967983999966
Q 001538 392 FMLLPFGGHSSKGLSEIATFTK-LHSSHTQAGHIKWPL--SGGVPSPVPIT------KCHSVDRVYLAGYHDGSVRIWDA 462 (1057)
Q Consensus 392 ~~s~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~wpl--~Gg~~~~~~~~------~~~~~~~~liTG~~DGsVriWD~ 462 (1057)
....|+.+..... .... ..+++ .+.+.....+. ....+...+++++.||+|++||+
T Consensus 317 ---------~~~s~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 317 ---------SITSYEGMKNYYANPKQM------KIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp ---------GGCCHHHHHHHHHSCSEE------EEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred ---------CCCCHHHHHHHHCCCCCE------EEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEC
T ss_conf ---------554255654664174522------78741899954799997788988677878506999917984899978
Q ss_pred CCCCEEEE-----EECC---CCEEE----------------------EEECCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 89961688-----6114---52001----------------------220499989799999608996999935860999
Q 001538 463 TYPVFKLI-----CALD---AEVQG----------------------IEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYI 512 (1057)
Q Consensus 463 ~~~~l~~l-----~~l~---~~v~~----------------------i~l~~~~~~V~~i~fs~~~~~Lavg~~dG~V~i 512 (1057)
..+..... ..+. ..+.. ..+.+|...+.+++|+|+++.|++|+.||+|++
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl 461 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI 461 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 99985565556898522358972489999749999988886046999754578577875333666758999658983899
Q ss_pred EEECCCCCCCCEEEEECCCCCEEEECCCCCCEEEEEE-----EECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE-
Q ss_conf 9936887764125531378716883069852365997-----4079784999986799899998489609999579870-
Q 001538 513 YNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-----SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS- 586 (1057)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~~~-----~~h~~~ItsLa~S~~g~~LA~Gs~dG~i~vwDi~~~~- 586 (1057)
|++......... +.. ..+ ..|...|++++|||+|++||+|+.||+|+|||+.++.
T Consensus 462 Wd~~~g~~~~~~---------~~~----------~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~ 522 (902)
T 2oaj_A 462 YDASHGDIQDNA---------SFE----------VNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQF 522 (902)
T ss_dssp EESSCCTTTTTB---------CEE----------EEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC
T ss_pred EECCCCCCCCCC---------EEE----------EECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 978776456773---------677----------5015413778887646999638999699994585799999248655
Q ss_pred --------------------------------------------EEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf --------------------------------------------799962488999884898983214764466899997
Q 001538 587 --------------------------------------------VLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHS 622 (1057)
Q Consensus 587 --------------------------------------------~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~ 622 (1057)
++.. +.+|..+|++++|+
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---l~~h~~~V~svafS--------------- 584 (902)
T 2oaj_A 523 YSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA---VHANKGKTSAINNS--------------- 584 (902)
T ss_dssp ---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEE---ECCCSCSEEEEEEC---------------
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE---EECCCCCEEEEEEC---------------
T ss_conf 575455778665113455134679654322423689887776014699---98688867799964---------------
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEECCCCC--C-CCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 776788999729999726871999928985501137653--4-7852469999513888989740000000000137999
Q 001538 623 EREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWH--L-KKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKP 699 (1057)
Q Consensus 623 ~~~~~~~p~~~~L~~gt~dg~i~i~d~~tg~~i~~~~i~--p-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1057)
||+ +|++|+.|++|++||.+++.++....++ . -+...+.++.+--....
T Consensus 585 -------pdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~-------------------- 636 (902)
T 2oaj_A 585 -------NIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG-------------------- 636 (902)
T ss_dssp -------BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT--------------------
T ss_pred -------CCC-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECC--------------------
T ss_conf -------876-8999958976999988898399970246726466661399999998417--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCEEEEEECCCCCCCCCEEE-EE-ECC--CCCCEEEEEEEE
Q ss_conf 99988754688755434455434579988995699983-58157863243002564036-64-206--875311366651
Q 001538 700 TPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCC-EDSVRLYSRKSVIQGNNKTV-QK-VKH--KNRCCWASTIEK 774 (1057)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~s-e~~ir~~s~~~~~~g~~k~~-~K-~~~--~~~~~~~~~~~~ 774 (1057)
|+ |. ...+++..+ +..||+|++...-.|..... .. ..+ ..+......|..
T Consensus 637 -~D-----------------------g~-~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~ 691 (902)
T 2oaj_A 637 -DD-----------------------GY-SSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSK 691 (902)
T ss_dssp -TS-----------------------SS-EEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEET
T ss_pred -CC-----------------------CC-CCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEEC
T ss_conf -89-----------------------87-633899995687399999955899868999667244078896479985866
Q ss_pred C------------------CCEEEEEEEEEECCEEEECCCCHHHCCC
Q ss_conf 7------------------9616999997508489921897000011
Q 001538 775 D------------------EKVCGLLLLFQTGAVQIRSLPDLELVME 803 (1057)
Q Consensus 775 ~------------------~~~~~l~~l~~~G~i~i~SlP~L~~~~~ 803 (1057)
+ ....++++++....|+|+++|..+.+..
T Consensus 692 ~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~k 738 (902)
T 2oaj_A 692 ETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTHK 738 (902)
T ss_dssp TTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEEE
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCCCCEEE
T ss_conf 87973668878972557788777399999354059996753351236
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=291.16 Aligned_cols=545 Identities=11% Similarity=0.093 Sum_probs=327.7
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCC----CEEEEEC-CCCC-EEEEEEEC--CCCEEEEECCCCCEEEEE
Q ss_conf 99988459999729969999968992999978999----2466514-8998-79999914--986899972699599999
Q 001538 24 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR----SLACCLK-WESN-ITAFSVIS--GSHFMYIGDENGLMSVIK 95 (1057)
Q Consensus 24 ~~~~~v~~L~F~~~~~~Lvs~s~d~~I~VWdl~s~----~~l~t~~-~~~~-Ita~~~s~--~~~~l~vG~~~G~I~v~~ 95 (1057)
++...|.+++|++++.+|++++ ++.|.||++.++ +....+. +... |++++++| ++.++++|..+|.|++|.
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEE
T ss_conf 7658536899889999799935-984999977788776514318805788449999979678998899964898799976
Q ss_pred EECC------CCCEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECC----CEEEEEECCCCEEEEE
Q ss_conf 8289------98011067012621121002889889879599970769999969999979----9899997668849999
Q 001538 96 YDAD------EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----ALVILWDVSEAQIIFV 165 (1057)
Q Consensus 96 ~d~~------~~~l~~~~~~i~~~~~~~~~g~~~~~~~~V~sI~~~P~d~g~~llia~~d----G~I~lwdl~~~~~~~~ 165 (1057)
++.. ...+. ..+ ..+..+|.+++|+| ++++++++..+ +.|.+|| .++.+..
T Consensus 95 ~~~~~~~~~~~~~~~---~~~------------~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~ 155 (615)
T 1pgu_A 95 WTFDKESNSVEVNVK---SEF------------QVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGE 155 (615)
T ss_dssp EEEEGGGTEEEEEEE---EEE------------ECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEE
T ss_pred CCCCCCCCCCCCCCC---CHH------------HCCCCCEEEEEEEC--CCCEEEEECCCCCCCCEEEEEE--CCCCCEE
T ss_conf 888765544554200---011------------12566379999907--9998999316877755799997--8981031
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 367764345774579998998854587778978897379998248999-7999974894999927999866887778888
Q 001538 166 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTTASTKGQQTGSRN 244 (1057)
Q Consensus 166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Vtsl~ws~pdg~-~ivtg~~DGsI~iWdi~~~~~~~~~~~~~~~ 244 (1057)
+.. | ...|++++|+ |++. .+++++.||.|++||+.++.
T Consensus 156 ~~~---------~--------------------~~~v~~~~~~-~~~~~~l~~~~~d~~v~vwd~~~~~----------- 194 (615)
T 1pgu_A 156 VSG---------H--------------------SQRINACHLK-QSRPMRSMTVGDDGSVVFYQGPPFK----------- 194 (615)
T ss_dssp CCS---------C--------------------SSCEEEEEEC-SSSSCEEEEEETTTEEEEEETTTBE-----------
T ss_pred EEC---------C--------------------CCCEEEEEEC-CCCCCEEEEEECCCCEEEEECCCCC-----------
T ss_conf 306---------7--------------------7438899988-7899689999579959999699961-----------
Q ss_pred CCEEEECCCCCCCC---CEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEE---CCC
Q ss_conf 50232225556886---489999312676788999639995487889965489998485345544301134531---587
Q 001538 245 NVVKLELSSAERRL---PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI---TLT 318 (1057)
Q Consensus 245 ~i~kl~l~~~~~~~---pI~~l~w~~~~~~~~~~~~~Llv~Gg~~~~~~~~ltvl~l~~~~~~~~~k~~~~~~l---~~~ 318 (1057)
.+..+ ..+.. +|..+.|+. +++.++++++.+ ..+.+|++.- .+....+.. .+.
T Consensus 195 ~~~~~----~~~~~~~~~v~~~~~~~-------~~~~~l~~~~~d----g~i~vwd~~~------~~~~~~~~~~~~~~~ 253 (615)
T 1pgu_A 195 FSASD----RTHHKQGSFVRDVEFSP-------DSGEFVITVGSD----RKISCFDGKS------GEFLKYIEDDQEPVQ 253 (615)
T ss_dssp EEEEE----CSSSCTTCCEEEEEECS-------TTCCEEEEEETT----CCEEEEETTT------CCEEEECCBTTBCCC
T ss_pred EEEEE----CCCCCCCCEEEEEEECC-------CCCCEEEEEECC----CEEEEEECCC------CCEEEEECCCCCCCC
T ss_conf 01320----25677774289999789-------778889998689----8089998999------978589525444567
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 74017999105998888884079998179816796262022220024789998984365114778996259999860589
Q 001538 319 GSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFG 398 (1057)
Q Consensus 319 ~~i~d~~~~p~~~~~g~~~~~~lvvl~~~G~l~~~D~~~~~~~l~~~~g~~~~~~~~~p~~l~~~~~~vt~~~~~s~~~~ 398 (1057)
..+..+.+. .. ..+++.+.+|.+.+||..... ....+..+...
T Consensus 254 ~~v~~~~~~-~~--------~~l~~~~~d~~i~~wd~~~~~----------------~~~~~~~~~~~------------ 296 (615)
T 1pgu_A 254 GGIFALSWL-DS--------QKFATVGADATIRVWDVTTSK----------------CVQKWTLDKQQ------------ 296 (615)
T ss_dssp SCEEEEEES-SS--------SEEEEEETTSEEEEEETTTTE----------------EEEEEECCTTC------------
T ss_pred CCEEEEEEC-CC--------CEEEEECCCCCEEEEECCCCC----------------EEEEECCCCCC------------
T ss_conf 755899981-89--------979998489948999788892----------------78788478775------------
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCEE
Q ss_conf 87502367898501235888777887688778888877754468988299999679839999668996168861145200
Q 001538 399 GHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQ 478 (1057)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~wpl~Gg~~~~~~~~~~~~~~~~liTG~~DGsVriWD~~~~~l~~l~~l~~~v~ 478 (1057)
..... ..+ .+ +.++.+++|+.||.|++||...+. ++..
T Consensus 297 -----------------------------~~~~~---~~~-~~-~~~~~l~~~~~~g~i~~~d~~~~~--~~~~------ 334 (615)
T 1pgu_A 297 -----------------------------LGNQQ---VGV-VA-TGNGRIISLSLDGTLNFYELGHDE--VLKT------ 334 (615)
T ss_dssp -----------------------------GGGCE---EEE-EE-EETTEEEEEETTSCEEEEETTEEE--EEEE------
T ss_pred -----------------------------CCCCE---EEE-EE-CCCCEEEEEECCCCEEEEECCCCC--EEEE------
T ss_conf -----------------------------45714---699-91-899769999789978999888992--8899------
Q ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCC--CCCCEEEEECCCCCEEEECCCCCCEEE--EEEEECCC
Q ss_conf 12204999897999996089969999358609999936887--764125531378716883069852365--99740797
Q 001538 479 GIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL--DAKNFLFVLETKSEVHALPEGKISLCR--AVFSLVNS 554 (1057)
Q Consensus 479 ~i~l~~~~~~V~~i~fs~~~~~Lavg~~dG~V~i~~~~~~~--~~~~~~~~~~~~~~i~~i~~~~g~~~~--~~~~~h~~ 554 (1057)
+.+|..+|++++| |+ |++++.||.|++|++..-. .......+...++........++.... ..-.....
T Consensus 335 ---~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 335 ---ISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp ---ECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred ---EECCCCCEEEEEE-CC---CEEECCCCEEEEEECHHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCC
T ss_conf ---9477787899995-67---4898799959998752415755685179997898679999589979998866676367
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 84999986799899998489609999579870799962488999884898983214764466899997776788999729
Q 001538 555 PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEV 634 (1057)
Q Consensus 555 ~ItsLa~S~~g~~LA~Gs~dG~i~vwDi~~~~~l~~~~~~~g~~~~V~sl~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 634 (1057)
.+.+++++|++.+++++ .++.+.+|++..+..+.... +..++.+++|+ +.+
T Consensus 408 ~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------------------------~~~ 458 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR----LNSPGSAVSLS------------------------QNY 458 (615)
T ss_dssp CEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE----CSSCEEEEEEC------------------------SSE
T ss_pred CCEEEEECCCCCEEEEE-CCCCEEEEECCCCCEEEECC----CCCCCEEEEEC------------------------CCE
T ss_conf 84699982898789996-79826999446786655515----67872077883------------------------888
Q ss_pred EEEEEC-CCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999726-8719999289855011376534785246999951388898974000000000013799999988754688755
Q 001538 635 IIVLFK-DAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHET 713 (1057)
Q Consensus 635 L~~gt~-dg~i~i~d~~tg~~i~~~~i~p~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1057)
|++++. |+.|.+||..++.+.. . ....+...+..+.+-.
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~-~-~~~~~~~~v~~~~~s~-------------------------------------- 498 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSF-D-LKTPLRAKPSYISISP-------------------------------------- 498 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEE-E-CSSCCSSCEEEEEECT--------------------------------------
T ss_pred EEEEECCCCEEEEEECCCCCCCC-C-CCCCCCCCEEEEEECC--------------------------------------
T ss_conf 99965689869999888854353-3-3677657507999989--------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEE-CCEEEEEECCCCCCCCCEEEEEECC-CCCCEEEEEEEE--------CCCEEEEEE
Q ss_conf 434455434579988995699983-5815786324300256403664206-875311366651--------796169999
Q 001538 714 EHLFSSENACSGESSNDALVLLCC-EDSVRLYSRKSVIQGNNKTVQKVKH-KNRCCWASTIEK--------DEKVCGLLL 783 (1057)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~vl~~s-e~~ir~~s~~~~~~g~~k~~~K~~~-~~~~~~~~~~~~--------~~~~~~l~~ 783 (1057)
. ..+++.++ +..|++|.+.. .+.+++..- ......+..|.. +..+-.|++
T Consensus 499 -----------~----g~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~ 558 (615)
T 1pgu_A 499 -----------S----ETYIAAGDVMGKILLYDLQS-----REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 558 (615)
T ss_dssp -----------T----SSEEEEEETTSCEEEEETTT-----TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred -----------C----CCEEEECCCCCEEEEEECCC-----CCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
T ss_conf -----------9----99899817998599865777-----762467604788714699976832345332468888999
Q ss_pred EEEECCEEEECCCCH-HHCCCCCCCCEEEECCCCCCCCCCCCC-CCCEEEECC
Q ss_conf 975084899218970-000112323222200066443221136-862999938
Q 001538 784 LFQTGAVQIRSLPDL-ELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG 834 (1057)
Q Consensus 784 l~~~G~i~i~SlP~L-~~~~~~~l~~~~~~~~~~~~~~~~~~s-~G~i~l~~~ 834 (1057)
...+|.|+++++.+. +.+... .-+......++++ +|+ ++..+
T Consensus 559 ~~~dg~i~iw~~~~~~~~~~~~--------~~h~~~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 559 GSLDTNIFIYSVKRPMKIIKAL--------NAHKDGVNNLLWETPST-LVSSG 602 (615)
T ss_dssp EETTSCEEEEESSCTTCCEEET--------TSSTTCEEEEEEEETTE-EEEEE
T ss_pred ECCCCCEEEEECCCCCEECHHH--------HCCCCCEEEEEECCCCC-EEEEC
T ss_conf 8179719999778885403113--------35943058999738997-28845
Done!