BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001539
(1057 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To
Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due To
Single Amino Acid Substitution
Length = 990
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/619 (43%), Positives = 360/619 (58%), Gaps = 50/619 (8%)
Query: 473 PYRIVLGNVXXXXXXXXXXXXXXXXXXPCDFDPWDYYXXXXXXXXXXXXXXXXXQSCGSG 532
PYR++LG+V D Y CG
Sbjct: 388 PYRVILGDVRDKLYNTRERSRHLLVDGKSDIPDEAVYTNVEQLLEPLELCYRSLCDCGDH 447
Query: 533 VLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEF 592
V+ADG L D +R+V TFG+ L+KLD+RQES RH E LDAIT++L +G+Y EW E+K+ E+
Sbjct: 448 VIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTEVLDAITQHLGIGSYREWSEEKRQEW 507
Query: 593 LTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELL 652
L EL GKRPL+ P + +VK+ LDTF+V AEL SD GAY+ISMA++ SDVLAVELL
Sbjct: 508 LLAELSGKRPLIGPDLPKTEEVKDCLDTFKVLAELPSDCFGAYIISMATSTSDVLAVELL 567
Query: 653 QKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH 712
Q++ + LRVVPLFE + DL A + +L S+DWYR I +G
Sbjct: 568 QREYHIK-----------HPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRI----DGK 612
Query: 713 QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYL 772
QEVM+GYSDSGKDAGRF+AAW+LYK QE +V EFG+K+ +FH PT+L
Sbjct: 613 QEVMIGYSDSGKDAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGGPTHL 672
Query: 773 AIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKW 832
A+ SQPP ++ G+LR T QGE+++ FG R L+ + A L M PP PR E W
Sbjct: 673 ALLSQPPDTINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-W 731
Query: 833 RNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLR 892
R LM++++ ++ + YRS V++ P F+ YF ATP+ E G +NIGSRP++RK S GI LR
Sbjct: 732 RELMDQMAVVATEEYRSVVFKEPRFVEYFRLATPELEFGRMNIGSRPSKRKPSGGIESLR 791
Query: 893 AIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DKGNTEDLKAMYKEWPFFQSTIDLIEMVL 950
AIPW+F+WTQTRF LP WLG GA K D N + L+ MYK WPFF+ TIDL+EMV
Sbjct: 792 AIPWIFSWTQTRFHLPVWLGFGAAFKHAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVF 851
Query: 951 GKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIES 1010
K + IA D++LVSE + G LR T+ Y+L ++GH+ L E + L++ I
Sbjct: 852 AKGNPGIAALNDKLLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDPYLKQGIRL 911
Query: 1011 RLPYLNPMNMLQVEILKRLRQDDDNHKLR------------------------------- 1039
R PY+ +N+ Q LKR+R + + LR
Sbjct: 912 RDPYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAAEPSKPADELIHLNPTSEYAPGL 971
Query: 1040 -DALLITINGIAAGMRNTG 1057
D L++T+ GIAAGM+NTG
Sbjct: 972 EDTLILTMKGIAAGMQNTG 990
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/359 (34%), Positives = 193/359 (53%), Gaps = 36/359 (10%)
Query: 20 DCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISK 79
D LL L D+LQ G + E V++ L+ G D +L ++L S ++
Sbjct: 58 DALLLDKFL-DILQDLHGEDLKEAVQQCYELSAE-----YEGKHDPKKL--EELGSLLTS 109
Query: 80 MTLEEALILARAFSHYLNLMGIAET-----HHRVR-KSRNVAHLSKS-----CDDIFSKL 128
+ +++++A+AFSH LNL +AE R++ KS + A + + ++ F +L
Sbjct: 110 LDTGDSIVIAKAFSHMLNLANLAEELQIAYRRRIKLKSGDFADEANATTESDIEETFKRL 169
Query: 129 VQG-GISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDR 187
V SP+E++D + Q VE+VLTAHPTQ RR+L KH R+ + L D+ +D+
Sbjct: 170 VHKLNKSPEEVFDALKNQTVELVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDK 229
Query: 188 EMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKK- 246
+ E + REI + ++TDE+RR PTP DE RAG++ +++WK VP +LRRV ALK
Sbjct: 230 QELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNI 289
Query: 247 HTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFEL 306
+ P I+F SWMGGDRDGNP VT +VTRDV LL+R M ++Y +++ L E+
Sbjct: 290 GINERFPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMTSNMYFSQIEDLMIEM 349
Query: 307 SMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADL 365
SM RC+ + A ++ +R +KH+ + +P P R L
Sbjct: 350 SMWRCNSELRVRAEELYR---------------TARKDVKHYIEFWKRIPPNQPYRVIL 393
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To
Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due To
Single Amino Acid Substitution
Length = 972
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 271/619 (43%), Positives = 358/619 (57%), Gaps = 50/619 (8%)
Query: 473 PYRIVLGNVXXXXXXXXXXXXXXXXXXPCDFDPWDYYXXXXXXXXXXXXXXXXXQSCGSG 532
PYR++LG+V D Y CG
Sbjct: 370 PYRVILGDVRDKLYNTRERSRHLLAHGISDIPEEAVYTNVEQFLEPLELCYRSLCDCGDR 429
Query: 533 VLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEF 592
V+ADG L D +R+V TFG+ L+KLD+RQES RH + LDAIT++L++G+Y EW E+K+ E+
Sbjct: 430 VIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEW 489
Query: 593 LTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELL 652
L EL GKRPL + +VK+VLDTF V AEL SD GAY+ISMA++ SDVLAVELL
Sbjct: 490 LLAELSGKRPLFGSDLPKTEEVKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELL 549
Query: 653 QKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH 712
Q++ + LRVVPLFE + DL A + +L SIDWYR I +G
Sbjct: 550 QRECHVK-----------HPLRVVPLFEKLADLEAAPAAMARLFSIDWYRNRI----DGK 594
Query: 713 QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYL 772
QEVM+GYSDSGKDAGRF+AAW+LYKAQE+++ EFG+K+ +FH PT+L
Sbjct: 595 QEVMIGYSDSGKDAGRFSAAWQLYKAQEEIIKVAKEFGVKLVIFHGRGGTVGRGGGPTHL 654
Query: 773 AIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKW 832
AI SQPP ++ G+LR T QGE+++ FG R L+ + A L M PP PR E W
Sbjct: 655 AILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-W 713
Query: 833 RNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLR 892
R LM++++ ++ + YRS V++ P F+ YF ATP+ E G +NIGSRP++RK S GI LR
Sbjct: 714 RELMDQMAVVATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLR 773
Query: 893 AIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DKGNTEDLKAMYKEWPFFQSTIDLIEMVL 950
AIPW+FAWTQTRF LP WLG GA K D N + L+ MYK WPFF+ TIDL+EMV
Sbjct: 774 AIPWIFAWTQTRFHLPVWLGFGAAFKHAIKKDSKNLQMLQEMYKTWPFFRVTIDLVEMVF 833
Query: 951 GKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIES 1010
K D IA D++LVSE G LR T+ Y+L ++GH L E + L++ I
Sbjct: 834 AKGDPGIAALNDKLLVSEDLWPFGESLRANYEETKDYLLKIAGHRDLLEGDPYLKQRIRL 893
Query: 1011 RLPYLNPMNMLQVEILKRLRQDDDNHKLR------------------------------- 1039
R Y+ +N+ Q LKR+R + + LR
Sbjct: 894 RDSYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAAEPSKPADELIHLNPTSEYAPGL 953
Query: 1040 -DALLITINGIAAGMRNTG 1057
D L++T+ GIAAGM+NTG
Sbjct: 954 EDTLILTMKGIAAGMQNTG 972
Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 187/335 (55%), Gaps = 24/335 (7%)
Query: 20 DCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISK 79
D LL L D+LQ G + E V+ L+ G D +L ++L S ++
Sbjct: 40 DALLLDKFL-DILQDLHGEDLKEAVQECYELSAE-----YEGKHDPKKL--EELGSVLTS 91
Query: 80 MTLEEALILARAFSHYLNLMGIAET-----HHRVRKSRN------VAHLSKSCDDIFSKL 128
+ +++++A+AFSH LNL +AE R++ R A ++ F KL
Sbjct: 92 LDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKRGDFADEANATTESDIEETFKKL 151
Query: 129 V-QGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDR 187
V + SP+E++D + Q V++VLTAHPTQ RR+L KH R+ + L D+ +D+
Sbjct: 152 VLKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDK 211
Query: 188 EMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKK- 246
+ E + REI + ++TDE+RR PTP DE RAG++ +++WK VP +LRRV ALK
Sbjct: 212 QELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNI 271
Query: 247 HTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFEL 306
+ +P I+F SWMGGDRDGNP VT +VTRDV LL+R MA ++Y +++ L FE+
Sbjct: 272 GINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMASNMYFSQIEDLMFEM 331
Query: 307 SMNRCSDRMSRLAHDILERETSSGDRH--ESWNQA 339
SM RC+ + R+ + L R +H E W Q
Sbjct: 332 SMWRCNSEL-RVRAEELYRTARRDVKHYIEFWKQV 365
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate Carboxylase
From Maize
pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate Carboxylase
From Maize
Length = 970
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/563 (44%), Positives = 348/563 (61%), Gaps = 52/563 (9%)
Query: 529 CGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDK 588
CG +ADG L DL+R+V TFG+ L+KLD+RQES RH + +DAIT +L +G+Y EW EDK
Sbjct: 426 CGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDK 485
Query: 589 KLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLA 648
+ E+L EL+GKRPL+PP + ++ +V+ F V AEL DS G Y+ISMA+ SDVLA
Sbjct: 486 RQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLA 545
Query: 649 VELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKN 708
VELLQ++ + +P P VVPLFE + DL+ A + +L S+DWY I
Sbjct: 546 VELLQRECGVR------QPLP-----VVPLFERLADLQSAPASVERLFSVDWYMDRI--- 591
Query: 709 HNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXX 768
G Q+VMVGYSDSGKDAGR +AAW+LY+AQE++ +G+K+TLFH
Sbjct: 592 -KGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGG 650
Query: 769 PTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPR 828
PT+LAI SQPP ++ G++R T QGE+++ FG + L+ +T A L M PP P+
Sbjct: 651 PTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPK 710
Query: 829 EEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGI 888
E WR LM+E++ ++ + YRS V + F+ YF ATP+ E G +NIGSRP +R+ GI
Sbjct: 711 PE-WRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKRRPGGGI 769
Query: 889 GHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKG--NTEDLKAMYKEWPFFQSTIDLI 946
LRAIPW+F+WTQTRF LP WLG+GA K DK N + LK MY EWPFF+ T+DL+
Sbjct: 770 TTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLL 829
Query: 947 EMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRR 1006
EMV K D IA YDE+LV+E + G +LR + + T++ +L ++GH+ + E + L++
Sbjct: 830 EMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQ 889
Query: 1007 LIESRLPYLNPMNMLQVEILKRLRQDDDNHK----------------------------- 1037
+ R PY+ +N+ Q LKR+R D N K
Sbjct: 890 GLVLRNPYITTLNVFQAYTLKRIR--DPNFKVTPQPPLSKEFADENKPAGLVKLNPASEY 947
Query: 1038 ---LRDALLITINGIAAGMRNTG 1057
L D L++T+ GIAAGM+NTG
Sbjct: 948 PPGLEDTLILTMKGIAAGMQNTG 970
Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 173/294 (58%), Gaps = 18/294 (6%)
Query: 61 GIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAE---THHRVRKSR----- 112
G DT +L E L ++++ + +A+++A + H LNL +AE HR R S+
Sbjct: 73 GKGDTTKLGE--LGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNSKLKKGG 130
Query: 113 ----NVAHLSKSCDDIFSKLV-QGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKH 167
A ++ +LV + G SP+E+++ + Q V++V TAHPTQ RR+L K+
Sbjct: 131 FADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKN 190
Query: 168 LRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQ 227
R+ + L + D+ +D++ E + REI + ++TDE+RR +PTP E R G++ + +
Sbjct: 191 ARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHE 250
Query: 228 SLWKAVPHYLRRVSNALKK-HTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLL 286
++WK VP +LRRV ALK + LP + IRF SWMGGDRDGNP VT +VTRDV LL
Sbjct: 251 TVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLL 310
Query: 287 SRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRH--ESWNQ 338
+R MA +LYI +++ L FELSM RC+D + A ++ S ++ E W Q
Sbjct: 311 ARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQ 364
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate Carboxylase
In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/536 (46%), Positives = 338/536 (63%), Gaps = 21/536 (3%)
Query: 527 QSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDE 586
Q+CG G++A+G L D +RRV FG+ L+++D+RQES RH EAL +TRYL +G Y W E
Sbjct: 364 QACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSE 423
Query: 587 DKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDV 646
K FL REL KRPL+P + ++ +EVLDT +V AE S+ AYVISMA SDV
Sbjct: 424 ADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDV 483
Query: 647 LAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHII 706
LAV LL K+A + G + V PLFET+ DL A V+ +LL+IDWYR I
Sbjct: 484 LAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI- 531
Query: 707 KNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXX 766
G Q VM+GYSDS KDAG A+W Y+AQ+ ++ C + GI++TLFH
Sbjct: 532 ---QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRG 588
Query: 767 XXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQP 826
P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+ V L +YT A+L A + PP
Sbjct: 589 GAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPE 648
Query: 827 PREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSST 886
P+E WR +M+E+S ISC YR V EN +F+ YF ATP+ ELG L +GSRP +R+ +
Sbjct: 649 PKE-SWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTG 707
Query: 887 GIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLI 946
G+ LRAIPW+FAWTQ R +LPAWLG G L+ V + G +L+AM ++WPFF + + ++
Sbjct: 708 GVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGML 767
Query: 947 EMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRR 1006
EMV KAD +A+ YD+ LV ++ LG ELR K VL ++ L + +
Sbjct: 768 EMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHLMADLPWIAE 827
Query: 1007 LIESRLPYLNPMNMLQVEILKRLRQ-----DDDNHKLRDALLITINGIAAGMRNTG 1057
I+ R Y +P+N+LQ E+L R RQ + + ++ AL++TI GIAAGMRNTG
Sbjct: 828 SIQLRNIYTDPLNVLQAELLHRSRQAEKEGQEPDPRVEQALMVTIAGIAAGMRNTG 883
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 172/296 (58%), Gaps = 9/296 (3%)
Query: 14 FQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQL 73
+ + + +LG +L + ++ +G +ERVE R L++S+ R + ELL
Sbjct: 5 YSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSS---RAGNDANRQELL---- 57
Query: 74 ASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLV-QGG 132
+ + ++ +E L +ARAFS +LNL AE +H + A + KL Q
Sbjct: 58 -TTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPE 116
Query: 133 ISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIE 192
+S D + V +E+VLTAHPT+I RRTL +K + ++ L D D+ + +
Sbjct: 117 LSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMR 176
Query: 193 DMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPL 252
+ + I W TDE+R+ +P+PVDEA+ G +VE SLW+ VP+YLR ++ L+++ G L
Sbjct: 177 RLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKL 236
Query: 253 PLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSM 308
P+ P+RF SWMGGDRDGNPNVTA +TR V LLSRW A DL+++++ L ELSM
Sbjct: 237 PVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSM 292
>pdb|3F2O|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
pdb|3F2O|B Chain B, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
Length = 233
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 327 TSSGDRHESWNQALSRNQLKHHGQQAPS 354
T G+ HESW L RN+L H G+ PS
Sbjct: 131 TLVGNNHESWGWDLGRNRLYHDGKNQPS 158
>pdb|2JK9|A Chain A, The Structure Of Spla-Ryanodine Receptor Domain And Socs
Box Containing 1 In Complex With A Par-4 Peptide
Length = 212
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 327 TSSGDRHESWNQALSRNQLKHHGQQAPS 354
T G+ HESW L RN+L H G+ PS
Sbjct: 110 TLVGNNHESWGWDLGRNRLYHDGKNQPS 137
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 903 TRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYD 962
RFV P + + G G+CD + + W Q D+I++VL + + R D
Sbjct: 88 VRFVTPVYSPLVTGEGGICD-------RMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRD 140
Query: 963 EVLVSESR-------QELGAELRR 979
+ + E+R Q+ A +RR
Sbjct: 141 DDVNPEARHYLEKFPQDFAARVRR 164
>pdb|1RO7|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|C Chain C, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|D Chain D, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac
Length = 259
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 833 RNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGY 872
+N E I C NY EN F+ F + P A LGY
Sbjct: 67 QNQEYETELIXCSNYNQAHLENENFVKTFYDYFPDAHLGY 106
>pdb|1RO8|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
pdb|1RO8|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
Length = 262
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 833 RNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGY 872
+N E I C NY EN F+ F + P A LGY
Sbjct: 70 QNQEYETELIXCSNYNQAHLENENFVKTFYDYFPDAHLGY 109
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 434 SFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIV 477
S+ S P + + F +Q+G + Q++L S P R+ YR++
Sbjct: 301 SYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSDVDYRLL 344
>pdb|2X61|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
pdb|2X61|B Chain B, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
Length = 258
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 833 RNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGY 872
+N E I C NY EN F+ F + P A LGY
Sbjct: 67 QNQEYETELIMCSNYNQAHLENENFVKTFYDYFPDAHLGY 106
>pdb|2X63|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii N51a In
Complex With Cmp
Length = 258
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 833 RNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGY 872
+N E I C NY EN F+ F + P A LGY
Sbjct: 66 QNQEYETELIMCSNYNQAHLENENFVKTFYDYFPDAHLGY 105
>pdb|2WQQ|A Chain A, Crystallographic Analysis Of Monomeric Cstii
Length = 291
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 833 RNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGY 872
+N E I C NY EN F+ F + P A LGY
Sbjct: 67 QNQEYETELIMCSNYNQAHLENENFVKTFYDYFPDAHLGY 106
>pdb|1VAV|A Chain A, Crystal Structure Of Alginate Lyase Pa1167 From
Pseudomonas Aeruginosa At 2.0 A Resolution
pdb|1VAV|B Chain B, Crystal Structure Of Alginate Lyase Pa1167 From
Pseudomonas Aeruginosa At 2.0 A Resolution
Length = 222
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 273 PNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDR 332
P +T S L R D + R D +RF + +N R S L RET S R
Sbjct: 11 PQGRPAITISTSQLQRDYRSDYFQRTADGIRFWVPVNGSHTRNSEFPRSEL-RETLSSGR 69
Query: 333 HESWNQALSRNQLK 346
+W A + N L+
Sbjct: 70 PYNWRYARADNWLE 83
>pdb|2DRJ|A Chain A, Xray Structure Of Alpha-2,38-Sialyltransferase Cstii F91y
Mutant
Length = 262
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 833 RNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGY 872
+N E I C NY EN ++ F + P A LGY
Sbjct: 70 QNQEYETELIMCSNYNQAHLENENYVKTFYDYFPDAHLGY 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,134,899
Number of Sequences: 62578
Number of extensions: 1237312
Number of successful extensions: 3029
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2982
Number of HSP's gapped (non-prelim): 24
length of query: 1057
length of database: 14,973,337
effective HSP length: 109
effective length of query: 948
effective length of database: 8,152,335
effective search space: 7728413580
effective search space used: 7728413580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)