Query 001539
Match_columns 1057
No_of_seqs 140 out of 821
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:23:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2352 Ppc Phosphoenolpyruvat 100.0 7E-260 2E-264 2235.4 94.2 886 13-1057 5-910 (910)
2 PRK00009 phosphoenolpyruvate c 100.0 7E-244 1E-248 2193.3 99.6 889 13-1057 5-911 (911)
3 PTZ00398 phosphoenolpyruvate c 100.0 1E-241 2E-246 2184.8 101.1 906 14-1057 47-974 (974)
4 PF00311 PEPcase: Phosphoenolp 100.0 4E-231 8E-236 2067.0 61.4 774 144-1057 1-794 (794)
5 PRK13655 phosphoenolpyruvate c 100.0 3.2E-79 6.9E-84 701.4 32.6 296 626-943 116-419 (494)
6 TIGR02751 PEPCase_arch phospho 100.0 1.4E-47 3.1E-52 440.9 31.3 300 627-962 116-435 (506)
7 PF14010 PEPcase_2: Phosphoeno 98.7 1.2E-07 2.6E-12 111.1 14.6 271 628-933 117-410 (491)
8 COG1892 Phosphoenolpyruvate ca 97.9 0.00068 1.5E-08 78.6 20.0 309 612-956 96-425 (488)
9 PF03328 HpcH_HpaI: HpcH/HpaI 96.0 0.021 4.5E-07 61.4 8.3 167 540-753 11-187 (221)
10 PRK10558 alpha-dehydro-beta-de 95.9 0.023 5E-07 63.0 8.0 168 544-756 34-216 (256)
11 TIGR03239 GarL 2-dehydro-3-deo 95.6 0.048 1E-06 60.3 9.1 168 544-756 27-209 (249)
12 TIGR01064 pyruv_kin pyruvate k 92.0 0.68 1.5E-05 55.9 9.9 99 622-756 178-276 (473)
13 TIGR01588 citE citrate lyase, 89.8 0.88 1.9E-05 51.4 7.6 102 632-753 86-189 (288)
14 TIGR02311 HpaI 2,4-dihydroxyhe 87.5 2.1 4.6E-05 47.4 8.5 108 632-755 85-209 (249)
15 PRK05826 pyruvate kinase; Prov 86.4 2.9 6.3E-05 50.5 9.4 96 624-755 182-277 (465)
16 PRK08187 pyruvate kinase; Vali 85.7 2.3 4.9E-05 51.7 8.1 114 632-770 325-438 (493)
17 PLN02623 pyruvate kinase 85.5 3.8 8.3E-05 50.6 9.9 113 621-770 284-396 (581)
18 PRK09206 pyruvate kinase; Prov 83.4 6.2 0.00013 47.8 10.3 99 621-755 178-276 (470)
19 PTZ00300 pyruvate kinase; Prov 81.0 10 0.00022 45.9 10.8 97 622-755 154-250 (454)
20 PRK06354 pyruvate kinase; Prov 80.1 9 0.00019 47.7 10.3 98 622-755 185-282 (590)
21 cd00288 Pyruvate_Kinase Pyruva 78.5 6 0.00013 48.1 8.0 96 623-755 182-277 (480)
22 PRK10128 2-keto-3-deoxy-L-rham 76.6 11 0.00024 42.5 8.9 70 672-756 145-216 (267)
23 PRK06247 pyruvate kinase; Prov 76.3 14 0.00031 44.9 10.2 94 622-755 180-273 (476)
24 PF02585 PIG-L: GlcNAc-PI de-N 58.4 25 0.00053 34.4 6.2 55 710-774 66-120 (128)
25 PF12897 Aminotran_MocR: Alani 57.1 9.3 0.0002 45.2 3.4 74 632-705 344-422 (425)
26 cd00480 malate_synt Malate syn 48.1 38 0.00082 41.7 6.7 101 634-753 187-303 (511)
27 PF04852 DUF640: Protein of un 45.7 36 0.00078 34.7 4.9 41 230-301 91-131 (132)
28 COG2301 CitE Citrate lyase bet 45.7 39 0.00085 38.6 5.9 96 632-753 81-181 (283)
29 TIGR03191 benz_CoA_bzdO benzoy 45.7 1E+02 0.0022 37.2 9.7 133 136-274 125-272 (430)
30 COG3294 HD supefamily hydrolas 44.4 28 0.00061 38.6 4.3 123 676-819 11-158 (269)
31 PRK06739 pyruvate kinase; Vali 42.2 2.1E+02 0.0045 33.9 11.2 100 621-756 171-270 (352)
32 cd00727 malate_synt_A Malate s 39.6 59 0.0013 40.1 6.5 108 624-752 179-302 (511)
33 PRK09255 malate synthase; Vali 39.5 59 0.0013 40.2 6.5 106 626-752 202-323 (531)
34 PRK14725 pyruvate kinase; Prov 37.1 1.6E+02 0.0034 37.2 9.6 108 635-770 448-555 (608)
35 PF12133 Sars6: Open reading f 35.2 11 0.00025 32.6 -0.3 45 542-591 15-59 (62)
36 PLN02461 Probable pyruvate kin 34.8 1.5E+02 0.0033 36.7 8.9 88 634-755 210-297 (511)
37 PF00224 PK: Pyruvate kinase, 34.8 74 0.0016 37.2 6.2 98 622-756 183-280 (348)
38 PF02526 GBP_repeat: Glycophor 33.5 38 0.00082 27.0 2.3 17 689-705 7-23 (38)
39 PTZ00066 pyruvate kinase; Prov 32.8 1.4E+02 0.0031 36.9 8.3 94 625-755 220-313 (513)
40 PF05524 PEP-utilisers_N: PEP- 29.5 1.2E+02 0.0027 29.6 5.9 54 940-994 52-106 (123)
41 PLN02765 pyruvate kinase 28.3 2.2E+02 0.0047 35.5 8.7 87 635-754 224-310 (526)
42 TIGR01344 malate_syn_A malate 28.1 84 0.0018 38.8 5.3 100 634-752 188-303 (511)
43 TIGR01093 aroD 3-dehydroquinat 25.7 2.8E+02 0.0062 30.2 8.4 46 609-656 129-174 (228)
44 PF01373 Glyco_hydro_14: Glyco 24.9 69 0.0015 38.3 3.7 74 672-766 5-85 (402)
45 PF09577 Spore_YpjB: Sporulati 22.6 6.7E+02 0.014 28.2 10.4 179 72-259 11-200 (232)
46 TIGR01417 PTS_I_fam phosphoeno 21.9 2.3E+02 0.005 35.5 7.6 112 632-762 384-507 (565)
47 PF09713 A_thal_3526: Plant pr 21.8 60 0.0013 28.4 1.8 31 123-153 3-34 (54)
48 PF08671 SinI: Anti-repressor 20.9 1.3E+02 0.0029 23.4 3.2 24 121-144 5-28 (30)
49 PTZ00413 lipoate synthase; Pro 20.7 1.1E+02 0.0025 36.5 4.3 46 613-658 276-324 (398)
50 PRK15278 type III secretion pr 20.3 1.1E+03 0.025 25.6 11.6 71 233-309 142-212 (261)
No 1
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=7.3e-260 Score=2235.42 Aligned_cols=886 Identities=46% Similarity=0.784 Sum_probs=835.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhChhHHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001539 13 SFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAF 92 (1057)
Q Consensus 13 ~~~~l~~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~~~~r~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~arAf 92 (1057)
+.+.++.||++||.+||++|+++.|+++|++||.||++++.. |. ++..+ ..+|.+.+.+|+.+++..++|||
T Consensus 5 ~~~~lr~~v~~Lg~lLge~i~e~~g~~~~e~ve~ir~~s~~~---r~-~~~~~----~~~L~~~l~~Ls~~~~~~vaRaF 76 (910)
T COG2352 5 KYSALRSDVSMLGRLLGETIREAEGEAILELVETIRKLSKES---RA-GDQAD----RQELEATLANLSNDEAIPVARAF 76 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh---hc-cchhh----HHHHHHHHcCCCHhhhhHHHHHH
Confidence 567899999999999999999999999999999999999766 43 22222 46788999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhhcc---CCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEeeecCCCccchhhHHHHHHH
Q 001539 93 SHYLNLMGIAETHHRVRKSRNVA---HLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLR 169 (1057)
Q Consensus 93 s~~f~L~NiAEe~~r~r~~r~~~---~~~~sl~~~~~~L~~~g~s~~~i~~~L~~~~v~pVlTAHPTE~~RrTvl~~~~r 169 (1057)
|+|++|+||||+.|+.|+++... ...+||..++++|++.|+|++++.+.|.++.|+|||||||||++||||++|+++
T Consensus 77 s~f~~L~NiaEd~~~~~r~~~~~~~~~~~~sL~~~~~~Lk~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~RrTv~~~~~~ 156 (910)
T COG2352 77 SQFLLLANIAEDYHRIRRRQIHEAAGDSDGSLAATLKKLKEQGLSPETVARALENLNVELVLTAHPTEVQRRTVIDKQRE 156 (910)
T ss_pred HHHhhhhhHHHHhhhHhhhhhhhccCCCcchHHHHHHHHHhcCCCHHHHHHHHHhCceeEEEecCchHHHHHHHHHHHHH
Confidence 99999999999999999876332 245999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHcccCccccCCCChHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC
Q 001539 170 LSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTG 249 (1057)
Q Consensus 170 I~~lL~~~d~~~~~~~e~~~~~~~l~~~I~~LW~T~eiR~~kPtv~DE~~~gL~y~~~sl~~avP~l~~~l~~al~~~~g 249 (1057)
|.++|.++|..++++. ++.++++|+++|..+||||+||..||||.|||+||++||++|||++||+++++++.++++++|
T Consensus 157 I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~~~~~~~~~ 235 (910)
T COG2352 157 INRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELNEALQETFG 235 (910)
T ss_pred HHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998888776 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----ccccHHHHHHHHHHHhh
Q 001539 250 KPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSM----NRCSDRMSRLAHDILER 325 (1057)
Q Consensus 250 ~~~p~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~~~LS~----s~~s~~l~~~~~~~~~~ 325 (1057)
...|..++|++|||||||||||||||||+||+++++++||+++++|.++|.+|.++||+ ..|++++.+++..
T Consensus 236 ~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ala~~---- 311 (910)
T COG2352 236 ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELLALAGE---- 311 (910)
T ss_pred cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHHHHHhc----
Confidence 77777789999999999999999999999999999999999999999999999999999 5788888776640
Q ss_pred hccCCCcccchhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCCc
Q 001539 326 ETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQN 405 (1057)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1057)
+.
T Consensus 312 ---~~--------------------------------------------------------------------------- 313 (910)
T COG2352 312 ---SQ--------------------------------------------------------------------------- 313 (910)
T ss_pred ---Cc---------------------------------------------------------------------------
Confidence 00
Q ss_pred cCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHHhhhhhhcccccccccccCCCCCCCCCCCChHHHHHHHHHHH
Q 001539 406 ACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKL 485 (1057)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL 485 (1057)
+...++.+||||++|.+|+.||
T Consensus 314 ----------------------------------------------------------d~~~~r~~EPYR~al~~i~~rL 335 (910)
T COG2352 314 ----------------------------------------------------------DQSIRRADEPYRRALKYIRSRL 335 (910)
T ss_pred ----------------------------------------------------------cccchhccccHHHHHHHHHHHH
Confidence 0112467799999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCCCCcCCCHHHhHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHcCccccccccccchhHH
Q 001539 486 MKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRH 565 (1057)
Q Consensus 486 ~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~sL~~~g~~~~a~~~l~~lir~v~~FGfhla~LDIRQnS~~H 565 (1057)
.+|.+.+.+.+.+.. ...+...|.+++||++||..|++||.+||++.+|+|.|.+++++|++|||||++|||||||++|
T Consensus 336 ~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~SL~~~G~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h 414 (910)
T COG2352 336 MATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQSLHACGMEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRH 414 (910)
T ss_pred HHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHHHHHhcCCceeccchHHHHHHHHHhcCceeeccccccccchH
Confidence 999999877666443 2334568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHhHHHHHHHHHHHHH----hCccccchhhhcCC
Q 001539 566 AEALDAITRYLDMG-TYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAE----LGSDSLGAYVISMA 640 (1057)
Q Consensus 566 ~~al~ei~~~~g~~-~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~evl~tf~~i~~----~g~~a~g~yIISmt 640 (1057)
++|++||++++|++ +|.+|||++|++||.+||.++|||+++...+|++++++|+||+++++ +|+++|++||||||
T Consensus 415 ~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~~~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma 494 (910)
T COG2352 415 EEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPFWQPSEETREELATFRVAAEAKDEFGEDAIGAYIISMA 494 (910)
T ss_pred HHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 99999999999998 99999999999999999999999999999999999999999999996 69999999999999
Q ss_pred CChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeEEEEeecc
Q 001539 641 SNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYS 720 (1057)
Q Consensus 641 ~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYS 720 (1057)
+++||||+|++|+||+||++. +..+++|||||||||||+||+.||++||+.|+||+.|.. ++|.||||||||
T Consensus 495 ~s~SDvLev~lLlKE~Gl~~~-------~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~-~~n~QEVMlGYS 566 (910)
T COG2352 495 ESVSDVLEVLLLLKEAGLVDP-------ERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAG-RGNVQEVMLGYS 566 (910)
T ss_pred CCHHHHHHHHHHHHHhCCCCc-------cCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcC-CCCceEEEeccc
Confidence 999999999999999999753 247899999999999999999999999999999999955 788999999999
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChhhhhhhcCCCCCcccccccccccchhhhhcC
Q 001539 721 DSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFG 800 (1057)
Q Consensus 721 DS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt~~AIlaqP~gsv~g~iRvTEQGEvI~~kyg 800 (1057)
||||||||++|||++|+||+.|+++|+++||+++|||||||||||||||+|.||+|||||||+|+||+|||||||..|||
T Consensus 567 DSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRGGtVGRGGGPa~~AILsQP~gsv~g~iRiTEQGE~I~~Kyg 646 (910)
T COG2352 567 DSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRGGSVGRGGGPAYAAILSQPPGSVKGRIRITEQGEMIAFKYG 646 (910)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCCCCCCCCCchHHHHHhcCCCcccCCceEeehhHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCC-CCCcHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHhhCchhHhhcCCCCCCC
Q 001539 801 LPQTAVRQLEIYTTAVLLATMRPPQ-PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRP 879 (1057)
Q Consensus 801 ~~~lA~rnLE~~~aa~l~as~~~~~-~~~~~~~~~~md~ls~~S~~~YR~lv~~~p~F~~yF~~aTPi~ei~~LnIGSRP 879 (1057)
+|++|.||||.+++|+|++++.|+. .| +++|+.+||+||+.||++||++||++|+|++||+++|||.||+.|||||||
T Consensus 647 ~p~~A~~nLe~l~sAvLeAsllp~~~dp-~~~~~~iMd~ls~~S~~~YR~lV~~~pdFvdyF~~~TPi~EIs~LniGSRP 725 (910)
T COG2352 647 LPEVARRNLETLVSAVLEASLLPPKPDP-KESWRAIMDELSDISCDAYRGLVRENPDFVDYFRQATPIQEISKLNIGSRP 725 (910)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhcCcHHHHhcCCCCCCC
Confidence 9999999999999999999999874 45 489999999999999999999999999999999999999999999999999
Q ss_pred CccCCC-CCCCcccccchhhhhhhhcccccchhhhhHHHHHhhhCC--CHHHHHHHHhcChhHHHHHHHHHHHHHhccHH
Q 001539 880 TRRKSS-TGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKG--NTEDLKAMYKEWPFFQSTIDLIEMVLGKADTH 956 (1057)
Q Consensus 880 akR~~~-~~ledLRAIPWVFsWtQ~R~~LPgWyGvGsAL~~~~~~~--~~~~L~~My~~wPfFrt~ldnvemaLaKaDl~ 956 (1057)
|||++. ++|+|||||||||||||+|+|||||||+|+|++.+++++ +.+.|++||++||||+++|+||+|+|+|+||.
T Consensus 726 A~Rk~~~~~ie~LRAIPWVFSWsQnR~mLP~WyG~Gsal~~~i~~g~~~~~~L~~m~~~WPFF~s~Lsn~emvlaKsd~~ 805 (910)
T COG2352 726 ASRKPTTGGIESLRAIPWVFSWTQNRLMLPAWYGVGSALQRFIEEGPENLALLRDMYQNWPFFSSRLSNMEMVLAKSDLW 805 (910)
T ss_pred cCCCCCCCccccccccchhhhhhhhhhcchhhhhhhHHHHHHHHcCcchHHHHHHHHhcCcHHHHHHHHHHHHHHhhhhH
Confidence 999986 559999999999999999999999999999999999887 89999999999999999999999999999999
Q ss_pred HHHHHHhhccchh-HHHHHHHHHHHHHHHHHHHHHHhCCCccccCChhHHHHHHhhhccccccHHHHHHHHHHHh---cC
Q 001539 957 IAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLR---QD 1032 (1057)
Q Consensus 957 Ia~~Y~~Ll~d~~-~~~i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~lQvelL~r~R---~~ 1032 (1057)
||.+|+++++|++ .+++|++|++||+.|++++|.|||++.||++||+|++||.+||||+||||++|||||||+| .+
T Consensus 806 iA~~Y~qll~d~~~~~~lf~~i~~e~~~T~~~vl~I~~~~~LL~d~p~La~Si~lRn~Y~dPLn~LQvELLkR~R~~~~~ 885 (910)
T COG2352 806 LAEHYAQLLVDPELGERLFDQIREEYQLTRKVVLAITGHDELLADNPWLAESIALRNPYLDPLNVLQVELLKRSRQSKRG 885 (910)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhcCCHHHHHHHHHhccccChhHHHHHHHHHHHhhcccC
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999999999999 45
Q ss_pred CCchhHHHHHHHHHHHHHhhhccCC
Q 001539 1033 DDNHKLRDALLITINGIAAGMRNTG 1057 (1057)
Q Consensus 1033 ~~~~~l~~all~TInGIAaGlrNTG 1057 (1057)
+.++.++++|++|||||||||||||
T Consensus 886 ~~~~~~er~i~lTInGIAaGlRNTG 910 (910)
T COG2352 886 DPDPEVERALLLTINGIAAGLRNTG 910 (910)
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCC
Confidence 6678999999999999999999999
No 2
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=100.00 E-value=6.6e-244 Score=2193.33 Aligned_cols=889 Identities=47% Similarity=0.800 Sum_probs=822.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhChhHHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001539 13 SFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAF 92 (1057)
Q Consensus 13 ~~~~l~~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~~~~r~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~arAf 92 (1057)
.+.+|++||++||++||+||++++|+++|++||+||.+++.. +. ++... .++|.+.+.+|+++++..|+|||
T Consensus 5 ~~~~Lr~dv~~Lg~lLg~vi~~~~g~~~~~~ve~ir~~~~~~---r~-~~~~~----~~~L~~~l~~L~~~e~~~v~raF 76 (911)
T PRK00009 5 KDAPLREDVRLLGRLLGDTIREQEGDEVFDLVETIRKLSKSS---RR-GDDAA----REELLKLLKNLSNDELLPVARAF 76 (911)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh---cc-ccchh----HHHHHHHHhcCCHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999865 32 21221 34689999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhhcc----CCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEeeecCCCccchhhHHHHHH
Q 001539 93 SHYLNLMGIAETHHRVRKSRNVA----HLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHL 168 (1057)
Q Consensus 93 s~~f~L~NiAEe~~r~r~~r~~~----~~~~sl~~~~~~L~~~g~s~~~i~~~L~~~~v~pVlTAHPTE~~RrTvl~~~~ 168 (1057)
|+||+|+|||||+|++|++|... ...+||..++.+|+++|+++++|+++|+++.|+|||||||||++|||||++|+
T Consensus 77 s~~~~L~NiAEe~~~~r~~r~~~~~~~~~~~sl~~~~~~l~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrtvL~~~~ 156 (911)
T PRK00009 77 SQFLNLANIAEDYHHIRRRREHASGSQPQPGSLAETLRRLKAAGVSPEELARALEELDIEPVLTAHPTEVQRRTLLDKQR 156 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHcCCCHHHHHHHHhhCcceeeeecCCcccchHHHHHHHH
Confidence 99999999999999999888653 35789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHcccCccccCCCChHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhc
Q 001539 169 RLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHT 248 (1057)
Q Consensus 169 rI~~lL~~~d~~~~~~~e~~~~~~~l~~~I~~LW~T~eiR~~kPtv~DE~~~gL~y~~~sl~~avP~l~~~l~~al~~~~ 248 (1057)
+|+.+|.++|+.++|+.|+++++++|+++|+.||||+++|+.||||.||++|||+||+++||++||.+|++|+++|.+++
T Consensus 157 ~I~~~L~~~d~~~~t~~e~~~~~~~l~~~i~~LW~T~eiR~~KPtv~DE~~~gl~y~~~~l~~aiP~~~~~l~~al~~~~ 236 (911)
T PRK00009 157 EIAALLRQLDDVDLTPRERAKIERRLRRLIAQLWQTDEIRQFRPTVVDEIKNGLAYYENSLWQAVPKLYRELEEALEEHF 236 (911)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhCcchhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----cccHHHHHHHHHHHh
Q 001539 249 GKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMN----RCSDRMSRLAHDILE 324 (1057)
Q Consensus 249 g~~~p~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~~~LS~s----~~s~~l~~~~~~~~~ 324 (1057)
|..+|..+++|+|||||||||||||||||+||++|+.++|++|+++|+++|++|.++||+| .||+++..++...
T Consensus 237 ~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~S~~~~~~s~~l~~l~~~~-- 314 (911)
T PRK00009 237 GLQLPLDAAPLRFGSWIGGDRDGNPNVTAEVTREVLLLQRWVALDLYLKELHALGSELSMSTRLVEVSPELRALAGAS-- 314 (911)
T ss_pred CccCCCCCceeeeccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHhhcc--
Confidence 8777766789999999999999999999999999999999999999999999999999995 5677776543200
Q ss_pred hhccCCCcccchhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCC
Q 001539 325 RETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQ 404 (1057)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1057)
T Consensus 315 -------------------------------------------------------------------------------- 314 (911)
T PRK00009 315 -------------------------------------------------------------------------------- 314 (911)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHHhhhhhhcccccccccccCCCCCCCCCCCChHHHHHHHHHH
Q 001539 405 NACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEK 484 (1057)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~EPyR~~l~~i~~r 484 (1057)
+..+.++++||||++|..|++|
T Consensus 315 ----------------------------------------------------------~~~~~~~~~EPYR~~l~~i~~r 336 (911)
T PRK00009 315 ----------------------------------------------------------PDQSPHRRDEPYRRALKGIRAR 336 (911)
T ss_pred ----------------------------------------------------------cccccccCCCcHHHHHHHHHHH
Confidence 0012346789999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCcCCCHHHhHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHcCccccccccccchhH
Q 001539 485 LMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGR 564 (1057)
Q Consensus 485 L~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~sL~~~g~~~~a~~~l~~lir~v~~FGfhla~LDIRQnS~~ 564 (1057)
|.+|+..+...+...+. ..+...|.+++||++||..|++||+++|+..+|+|.|.++|++|++|||||++|||||||++
T Consensus 337 L~~t~~~~~~~~~~~~~-~~~~~~Y~~~~ell~dL~~i~~SL~~~~~~~~A~~~L~~lir~v~~FGfhla~LDiRQ~S~~ 415 (911)
T PRK00009 337 LAATADWLEARLAGEEA-PPPADPYASAEELLADLDLIYQSLRACGMGILANGRLLDLLRRVEVFGFHLARLDIRQESSR 415 (911)
T ss_pred HHHHHHHHHhhhccCCC-CcccccCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHhhCcccCCcccccChHH
Confidence 99999877544332111 01234799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHhHHH----HHHHHHHHHHhCccccchhhhcCC
Q 001539 565 HAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKE----VLDTFRVAAELGSDSLGAYVISMA 640 (1057)
Q Consensus 565 H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e----vl~tf~~i~~~g~~a~g~yIISmt 640 (1057)
|++|++||++++|+++|.+|||++|++||.++|.++||++++...+|+++++ +..++++++.+|+++|+.||||||
T Consensus 416 H~~ai~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~i~~yIiSmt 495 (911)
T PRK00009 416 HEDAVAELTRYLGLGDYASLSEAEKQAFLLRELNSRRPLIPPNWEYSELTSKELAEFLAARRLIAEFGAEAIGAYIISMA 495 (911)
T ss_pred HHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHhCchhhceEeecCC
Confidence 9999999999999889999999999999999999999999988877665555 455555556689999999999999
Q ss_pred CChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeEEEEeecc
Q 001539 641 SNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYS 720 (1057)
Q Consensus 641 ~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYS 720 (1057)
+++||||+|++|+|++|+..... + .++|+|||||||++||+||+.||++||++|+||+|++. +++.||||||||
T Consensus 496 ~~~sdvL~v~~l~k~~gl~~~~~-~----~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~-~~~~qeVMlGyS 569 (911)
T PRK00009 496 ETVSDVLEVLLLLKEAGLLDPAA-A----RAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAG-RGNLQEVMLGYS 569 (911)
T ss_pred CCHHHHHHHHHHHHHcCCCccCC-C----CCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhc-CCCeEEEEeecc
Confidence 99999999999999999874321 1 25899999999999999999999999999999999965 788999999999
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChhhhhhhcCCCCCcccccccccccchhhhhcC
Q 001539 721 DSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFG 800 (1057)
Q Consensus 721 DS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt~~AIlaqP~gsv~g~iRvTEQGEvI~~kyg 800 (1057)
|||||||+++|+|+||+||++|+++|+++||+++|||||||||||||||+|+||+|||+||++|+||+|||||||++|||
T Consensus 570 DS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp~~~ai~~qp~g~~~g~iR~TeQGEvI~~kY~ 649 (911)
T PRK00009 570 DSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGPAYAAILSQPPGSVKGRIRVTEQGEVIRSKYG 649 (911)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCChHHHHHHhCCCccccCceEEEeechhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHhhCchhHhhcCCCCCCCC
Q 001539 801 LPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPT 880 (1057)
Q Consensus 801 ~~~lA~rnLE~~~aa~l~as~~~~~~~~~~~~~~~md~ls~~S~~~YR~lv~~~p~F~~yF~~aTPi~ei~~LnIGSRPa 880 (1057)
+|.+|.+|||++++|+|.+++.+++++ +++|+++|++||+.|+++||++||++|+|++||+++||+.||++|||||||+
T Consensus 650 ~~~~a~~nLE~~~~a~l~~~~~~~~~~-~~~~~~~m~~ls~~s~~~Yr~lv~~~~~F~~yf~~~tP~~e~~~l~IGSRP~ 728 (911)
T PRK00009 650 LPEVARRNLELLTAATLEASLLPPPEP-KPEWREIMDELSDRSCKAYRGLVRENPDFVDYFRAATPIQEIGKLNIGSRPA 728 (911)
T ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhChHHHHHhccccCCCC
Confidence 999999999999999999998776544 5889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcccccchhhhhhhhcccccchhhhhHHHHHhhhC---CCHHHHHHHHhcChhHHHHHHHHHHHHHhccHHH
Q 001539 881 RRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDK---GNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHI 957 (1057)
Q Consensus 881 kR~~~~~ledLRAIPWVFsWtQ~R~~LPgWyGvGsAL~~~~~~---~~~~~L~~My~~wPfFrt~ldnvemaLaKaDl~I 957 (1057)
||++.++++|||||||||||+|+|+++|||||+|+||+.+++. ++++.||+||++||||+++|||++|+|+||||.|
T Consensus 729 ~R~~~~~i~~lRAIPwvfsW~Q~R~~lP~w~G~Gsal~~~~~~~~~~~~~~L~~my~~WPFF~~~ldn~em~LaKaD~~I 808 (911)
T PRK00009 729 SRKPTGGIESLRAIPWVFSWSQNRLMLPGWYGVGSALQAAIDDEPPGRLALLREMYQDWPFFRTLLSNLEMVLAKADLNI 808 (911)
T ss_pred CCCCCCCccccccchhhhhHHhhhccchHHhhHHHHHHHHHhccCcchHHHHHHHHHcCcHHHHHHHHHHHHHHhhCHHH
Confidence 9987788999999999999999999999999999999998865 6789999999999999999999999999999999
Q ss_pred HHHHHhhccchh-HHHHHHHHHHHHHHHHHHHHHHhCCCccccCChhHHHHHHhhhccccccHHHHHHHHHHHhc--CCC
Q 001539 958 AKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQ--DDD 1034 (1057)
Q Consensus 958 a~~Y~~Ll~d~~-~~~i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~lQvelL~r~R~--~~~ 1034 (1057)
|++|+++++|++ +++||++|++||++|+++||+|||++.||+++|+|++||++|||||||||++||++|||+|+ +++
T Consensus 809 a~~Y~~ll~d~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~lQvelL~r~R~~~~~~ 888 (911)
T PRK00009 809 AERYAQLLVDKELRPRLFERIRDELELTIKVVLAITGQDELLADNPWLARSIRLRNPYLDPLNHLQVELLKRLRAQEGDP 888 (911)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 999999999998 66699999999999999999999999999999999999999999999999999999999998 455
Q ss_pred chhHHHHHHHHHHHHHhhhccCC
Q 001539 1035 NHKLRDALLITINGIAAGMRNTG 1057 (1057)
Q Consensus 1035 ~~~l~~all~TInGIAaGlrNTG 1057 (1057)
++.++++|++|||||||||||||
T Consensus 889 ~~~l~~~l~~TInGIAaGlrNTG 911 (911)
T PRK00009 889 DEEVERAIHLTINGIAAGLRNTG 911 (911)
T ss_pred CHHHHHHHHHHHHHHHHHhccCC
Confidence 68899999999999999999999
No 3
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=1.1e-241 Score=2184.82 Aligned_cols=906 Identities=41% Similarity=0.693 Sum_probs=829.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhChhHHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001539 14 FQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFS 93 (1057)
Q Consensus 14 ~~~l~~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~~~~r~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~arAfs 93 (1057)
.++|+.||++||++||+||+++.|+++|+.||+||.+++.. +..++.. ..++|.+.+.+|+++++..|+||||
T Consensus 47 ~~~L~~dv~~Lg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~---~~~~~~~----~~~~l~~~l~~l~~~~~~~v~raFs 119 (974)
T PTZ00398 47 QEPLDLDIKALEFLLFDLVKDHWPEDGFEIIFDILKLSMKF---SENEDSE----SFNTLWKKIYNLDSGYLGLVVRLFN 119 (974)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---hhccchh----hHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999875 3322222 1357889999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhhcc--------CCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEeeecCCCccchhhHHH
Q 001539 94 HYLNLMGIAETHHRVRKSRNVA--------HLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQY 165 (1057)
Q Consensus 94 ~~f~L~NiAEe~~r~r~~r~~~--------~~~~sl~~~~~~L~~~g~s~~~i~~~L~~~~v~pVlTAHPTE~~RrTvl~ 165 (1057)
+||+|+|||||+|++|++|... ...+||..++.+|+++|+++++|+++|+++.|+|||||||||++|||||+
T Consensus 120 ~~~~L~NiAE~~~~~r~~r~~~~~~~~~~~~~~~sl~~~l~~L~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrTvL~ 199 (974)
T PTZ00398 120 HMCVLSNYAEWAHRIRRRRAFERSFTDNDRIFTESLKNTIEMLLQAGFDKEEIYKQLCNQEIDLVLTAHPTQAQRISVLK 199 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCccCcHHHHHHHHHHcCCCHHHHHHHHhcCceeeeeccCCccccHHHHHH
Confidence 9999999999999999887643 24799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHcccCccccCCCChHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 001539 166 KHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALK 245 (1057)
Q Consensus 166 ~~~rI~~lL~~~d~~~~~~~e~~~~~~~l~~~I~~LW~T~eiR~~kPtv~DE~~~gL~y~~~sl~~avP~l~~~l~~al~ 245 (1057)
||++|+++|.++|+.++|+.|+++++++|+++|+.||||||||+.||||.||++|||+||++|||++||.+|++|+++|.
T Consensus 200 ~~~~I~~~L~~ld~~~~t~~e~~~~~~~L~~~I~~LW~TdeiR~~KPtv~DE~~~gl~y~~~sl~~aiP~~~~~l~~al~ 279 (974)
T PTZ00398 200 NCQRLGELLLSLDNTDLTPFEIKDLKKNLQRLLAMLWKTDTIRRAKPTPLDEAQNLINTIENTIFDALPNFIRYIDNVLY 279 (974)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHhCcchhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHhh
Q 001539 246 KHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILER 325 (1057)
Q Consensus 246 ~~~g~~~p~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~~~LS~s~~s~~l~~~~~~~~~~ 325 (1057)
++++.++|..+++|+|||||||||||||||||+||++|+.++|++|+++|+++|++|+++||+|.|++++..+.......
T Consensus 280 ~~~~~~~~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~L~~~~~~~~~~ 359 (974)
T PTZ00398 280 EYNLDPLPPTKKLFTFSSWVGGDRDGNPFVTAEVTRQVVYFNRIRACELFIHMIEKLMYDLPLKSCTEKLKEYVDNLPDE 359 (974)
T ss_pred HhcCCCCCCCCCceeccCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhhhhh
Confidence 99876666667899999999999999999999999999999999999999999999999999999999998866422110
Q ss_pred hccCCCcccchhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCCc
Q 001539 326 ETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQN 405 (1057)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1057)
. ++.. ..+ ..+...
T Consensus 360 --~--------------------------~~~~-~~~-~~~~~~------------------------------------ 373 (974)
T PTZ00398 360 --I--------------------------SFYI-TDK-DATYLL------------------------------------ 373 (974)
T ss_pred --h--------------------------cccc-ccc-hhhhhh------------------------------------
Confidence 0 0000 000 000000
Q ss_pred cCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHHhhhhhhcccccccccccCCCCCCCCCCCChHHHHHHHHHHH
Q 001539 406 ACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKL 485 (1057)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL 485 (1057)
. .|. ..+ .++||||++|..|++||
T Consensus 374 --------------------~-----------------------------~~~-----~~~--~~~EPYR~~l~~i~~rL 397 (974)
T PTZ00398 374 --------------------R-----------------------------EFM-----GFI--PEKELYRRALLHVRAKL 397 (974)
T ss_pred --------------------h-----------------------------hhc-----ccC--CCCCcHHHHHHHHHHHH
Confidence 0 000 011 16899999999999999
Q ss_pred HHHHHHHHhhhccCCCC--CCCCCcCCCHHHhHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHcCccccccccccchh
Q 001539 486 MKTRRRLELLLEDLPCD--FDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESG 563 (1057)
Q Consensus 486 ~~t~~~~~~~~~~~~~~--~~~~~~y~~~~ell~dL~~i~~sL~~~g~~~~a~~~l~~lir~v~~FGfhla~LDIRQnS~ 563 (1057)
.+|+..+...+...+.+ ......|.+++||++||..|++||++||+..+|+|.|.++||+|++|||||++|||||||+
T Consensus 398 ~~t~~~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~~g~~~lA~g~L~dlir~v~~FGfhLa~LDIRQ~S~ 477 (974)
T PTZ00398 398 IATRDYYKDLISNHSVDPEFRRELAYHSTDEILEPLIECYNSLEDVGNTILARGRLLDVIRQVKTFGLHLMKLDIRQESS 477 (974)
T ss_pred HHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHHHHHHHHCCChhhHhhHHHHHHHHHHHhCccccccccccCcH
Confidence 99999886543321111 1123469999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHhHHHHHHHHHHHHHhCccccchhhhcCCCCh
Q 001539 564 RHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNA 643 (1057)
Q Consensus 564 ~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~evl~tf~~i~~~g~~a~g~yIISmt~s~ 643 (1057)
+|++|++||++++|+++|.+|||++|++||.++|.++||+++++..+|+++++||+||++++++|+++||+||||||+++
T Consensus 478 ~H~~ai~el~~~~g~~~Y~~l~E~er~~~L~~eL~~~rpl~~~~~~~s~~~~evl~~f~~ia~~~~~alg~yIISmt~~~ 557 (974)
T PTZ00398 478 KHEKAMDEICEYLGLGNYSELSEEEKQDFLLDILPSKRPLIPHDLNWPSEVNEVLDTFKVCSELENEALGAYIISMCRNP 557 (974)
T ss_pred HHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHccccccceeeeCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeEEEEeecccCC
Q 001539 644 SDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSG 723 (1057)
Q Consensus 644 SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~ 723 (1057)
||||+|++|+|++|+. +. .++|+|||||||++||+||+.||++||++|+||+|++.+++++|||||||||||
T Consensus 558 sdiL~V~~l~k~~g~~-----~~---~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS~ 629 (974)
T PTZ00398 558 SDILLVHVFQKEILKS-----GA---SKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYSDSG 629 (974)
T ss_pred HHHHHHHHHHHHhCCc-----CC---CCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEeccccc
Confidence 9999999999999963 11 258999999999999999999999999999999999744688999999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChhhhhhhcCCCCCcccccccccccchhhhhcCCHH
Q 001539 724 KDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQ 803 (1057)
Q Consensus 724 KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt~~AIlaqP~gsv~g~iRvTEQGEvI~~kyg~~~ 803 (1057)
||||+++|+|+||+||++|+++|+++||+++|||||||||||||||+|+||+|||+||++|.+|+|||||||++|||+++
T Consensus 630 Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~aIlsqp~~~~~g~ir~TeQGE~i~~ky~~~~ 709 (974)
T PTZ00398 630 KDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHLAILSQPPNTIKSYLRITIQGETITQNFGLKG 709 (974)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHHHhcCCCccccCeeEEeeechhhHHhcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHhhCchhHhhcCCCCCCCCccC
Q 001539 804 TAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRK 883 (1057)
Q Consensus 804 lA~rnLE~~~aa~l~as~~~~~~~~~~~~~~~md~ls~~S~~~YR~lv~~~p~F~~yF~~aTPi~ei~~LnIGSRPakR~ 883 (1057)
+|.+|||++++|+|.+++.+++.+..++|+++|++||+.|+++||++||++|+|++||.++||+.||+.|||||||+||+
T Consensus 710 ~a~~~le~~~aA~l~~~~~~~~~~~~~~~~~~m~~la~~s~~~Yr~lv~~~~~fv~yf~~atP~~e~~~L~iGSRP~~R~ 789 (974)
T PTZ00398 710 ICLRTWELYMSALLKCSLLADPIPVKQEWRELMDEMSEISMKEYRKVVRENPDFVPYFRSVTPEKEIGELNIGSRPSKRK 789 (974)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhChHHHHHhcccCCCCCCCC
Confidence 99999999999999999877655535889999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCcccccchhhhhhhhcccccchhhhhHHHHHhhhCCCHHHHHHHHhcChhHHHHHHHHHHHHHhccHHHHHHHHh
Q 001539 884 SSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDE 963 (1057)
Q Consensus 884 ~~~~ledLRAIPWVFsWtQ~R~~LPgWyGvGsAL~~~~~~~~~~~L~~My~~wPfFrt~ldnvemaLaKaDl~Ia~~Y~~ 963 (1057)
..++++||||||||||+|+|++||+|||+|+||+.+++.++++.|++||++||||+++|||++|+|+||||.||++|++
T Consensus 790 -~~~i~~LRAIPwvfaW~Q~r~~LP~w~G~G~al~~~~~~~~~~~L~~m~~~wpff~~~l~~~~m~LaKaDl~IA~~Y~~ 868 (974)
T PTZ00398 790 -EGGIETLRAIPWVFAWTQNRLHLPVWLGLEDALEELKKKGKLNLIADMYKNWPFCKSFFNLVSMVLLKTDVQITEEYNK 868 (974)
T ss_pred -CCCCCcccccchhhHHHhccCCchHHHhHHHHHHHHHhcChHHHHHHHHHhCHHHHHHHhHHHHHHHccCHHHHHHHHH
Confidence 4789999999999999999999999999999999998777799999999999999999999999999999999999998
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHhCCCccccCChhHHHHHHhhhccccccHHHHHHHHHHHhc------------
Q 001539 964 VLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQ------------ 1031 (1057)
Q Consensus 964 Ll~d~~~~~i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~lQvelL~r~R~------------ 1031 (1057)
+++|++.++||+.|++||++|+++|++|||+++||+++|++++||++|||||||||++|||||||+|+
T Consensus 869 ~l~~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~l~~Si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~ 948 (974)
T PTZ00398 869 MLVPEQLQYIGNLLRNKLKKTTNLILLVTKEKQLLDNDIVTKRSILLRFKWVAPCNLIQIEALKRLRKINDSTYDEDTKN 948 (974)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 88888877799999999999999999999999999999999999999999999999999999999992
Q ss_pred CCCchhHHHHHHHHHHHHHhhhccCC
Q 001539 1032 DDDNHKLRDALLITINGIAAGMRNTG 1057 (1057)
Q Consensus 1032 ~~~~~~l~~all~TInGIAaGlrNTG 1057 (1057)
.++++.++++|++|||||||||||||
T Consensus 949 ~~~~~~l~~~l~~TInGIAaGlrNTG 974 (974)
T PTZ00398 949 EIEDTSLEDALIISIKAIAAGMQNTG 974 (974)
T ss_pred cccchHHHHHHHHHHHHHHHHcccCC
Confidence 22357799999999999999999999
No 4
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=100.00 E-value=3.6e-231 Score=2067.04 Aligned_cols=774 Identities=51% Similarity=0.817 Sum_probs=636.5
Q ss_pred ccceeEeeecCCCccchhhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHcccCccccCCCChHHHHHHHHH
Q 001539 144 KQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLN 223 (1057)
Q Consensus 144 ~~~v~pVlTAHPTE~~RrTvl~~~~rI~~lL~~~d~~~~~~~e~~~~~~~l~~~I~~LW~T~eiR~~kPtv~DE~~~gL~ 223 (1057)
++.|+|||||||||++|||||++|++|+.+|.++|+.++++.|+.+++++|+++|+.||||+|+|+.||||.||++|||+
T Consensus 1 ~l~i~pVlTAHPTEa~RrtvL~~~~~I~~lL~~~d~~~lt~~e~~~~~~~L~~~I~~LWqT~eiR~~KPtv~DE~~~~L~ 80 (794)
T PF00311_consen 1 ELEIEPVLTAHPTEAKRRTVLDKHRRIAELLDQLDNPDLTPRERAELEERLRREITALWQTDEIRREKPTVLDEARNGLY 80 (794)
T ss_dssp --EEEEEEE--TT--SSCHHHHHHHHHHHHHHHCT-TT--HHHHHHHHHHHHHHHHHHHCS--C-SS---HHHHHHHHHH
T ss_pred CceEEEEeccCCCcCcHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCccccccCCChHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001539 224 IVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLR 303 (1057)
Q Consensus 224 y~~~sl~~avP~l~~~l~~al~~~~g~~~p~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~ 303 (1057)
||+++||++||.+|+++++++.++|+...+..+++|+|||||||||||||||||+||++|+.++|++++++|++++++|.
T Consensus 81 y~~~~l~~aiP~l~~~l~~al~~~~~~~~~~~~~~i~fGSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~y~~~l~~L~ 160 (794)
T PF00311_consen 81 YFENSLFDAIPQLYRRLERALREHYPDPRLPVPPFIRFGSWIGGDRDGNPFVTAEVTREALRLQREAALRLYLRELDELR 160 (794)
T ss_dssp HHCCTCCCCHHHHHHHHHHHHHCCTS-S---T--SEEEEE-TTTB-TT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCeeEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998554445889999999999999999999999999999999999999999999999
Q ss_pred hhhcccc----ccHHHHHHHHHHHhhhccCCCcccchhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCC
Q 001539 304 FELSMNR----CSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYP 379 (1057)
Q Consensus 304 ~~LS~s~----~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1057)
++||+|. +|+++.+..+...+ ..+...
T Consensus 161 ~~LS~S~~~~~~s~~L~~~l~~~~~---------------------------------------~~~~~~---------- 191 (794)
T PF00311_consen 161 RELSLSDRRVPVSDELRARLEDDRE---------------------------------------ALPEVA---------- 191 (794)
T ss_dssp HH-------S---HHHHHCCHCCCH------------------------------------------TT-----------
T ss_pred HHHHHhhcccccHHHHHHHHhhccc---------------------------------------cccccc----------
Confidence 9999963 45544432220000 000000
Q ss_pred CcCCCCcCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHHhhhhhhccccccccc
Q 001539 380 KLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQK 459 (1057)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 459 (1057)
T Consensus 192 -------------------------------------------------------------------------------- 191 (794)
T PF00311_consen 192 -------------------------------------------------------------------------------- 191 (794)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcCCCHHHhHHHHHHHHHHHHhcCCccccchHH
Q 001539 460 LLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRL 539 (1057)
Q Consensus 460 ~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~sL~~~g~~~~a~~~l 539 (1057)
.....++++||||++|..|++||.+|+.+......... ..+...|.+++||++||..|++||.++|+..+|++.|
T Consensus 192 ---~~~~~~~~~EPYR~~l~~i~~RL~at~~~~~~~~~~~~--~~~~~~Y~~~~Ell~dL~~i~~SL~~~g~~~lA~~~L 266 (794)
T PF00311_consen 192 ---EEFSRRNPDEPYRRKLRLIRARLEATLRRLEAGLSGRA--DPAAEAYRSAEELLADLRLIRDSLIANGAERLADGRL 266 (794)
T ss_dssp ---SSSS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHTSS--S-STTS--SHHHHHHHHHHHHHHHHHTT-HCCCTTHH
T ss_pred ---ccccccccccHHHHHHHHHHHHHHHHHHHHhhcccccC--CCcccCCCCHHHHHHHHHHHHHHHHHCCCchHHHhhH
Confidence 01345688999999999999999999998776655431 1234589999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccccccccccchhHHHHHHHHHHHhcCC-CCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHhHHHHH
Q 001539 540 GDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDM-GTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVL 618 (1057)
Q Consensus 540 ~~lir~v~~FGfhla~LDIRQnS~~H~~al~ei~~~~g~-~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~evl 618 (1057)
.++|++|++|||||++|||||||++|++|+++|++.+|+ ++|.+|+|++|+++|.++|++++|+.+++.++++++++++
T Consensus 267 ~~lir~V~~FGfhLa~LDIRQnS~~H~~av~el~~~~g~~~~Y~~l~e~~r~~~L~~eL~~~rpl~~~~~~~~~~~~~~l 346 (794)
T PF00311_consen 267 RDLIRQVETFGFHLASLDIRQNSTVHEEAVAELLRHAGIPDDYAELSEEERIALLTRELKSPRPLIPPFAPLSEETREVL 346 (794)
T ss_dssp HHHHHHHHHCTTTSSEEEEEEECHHHHHHHHHHHHCCTS---CCCS-HHHHHHHHHHHHH-SS--S-TT----HHHHHHH
T ss_pred HHHHHHHhccCcceecccccccHHHHHHHHHHHHHhcCCCCCcccCCHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----CccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHH
Q 001539 619 DTFRVAAEL----GSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRK 694 (1057)
Q Consensus 619 ~tf~~i~~~----g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~ 694 (1057)
++|++++++ |+++|++||||||+++||||+|++|+|++|+...++++ ++|+||||||||+||+|||+||++
T Consensus 347 ~~f~~~~~~~~~~g~~~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~-----~~l~vvPLFETi~DL~~a~~im~~ 421 (794)
T PF00311_consen 347 DTFRVIAEIQKRYGPDAIGRYIISMTESASDVLEVLLLAKEAGLADGGDGG-----CRLDVVPLFETIDDLENAPDIMEE 421 (794)
T ss_dssp HHHHHHHHS-----CCCEEEEEECT--SCHHHHHHHHHHHCTT---SS--------S---EEEEE-SHHHHHCHHHHHHH
T ss_pred HHHHHHHHhhhcchhhhHHHheeeCCCChHHHHHHHHHHHHhCCCcccccc-----cccCCCCCCCCHHHHHhHHHHHHH
Confidence 999999974 99999999999999999999999999999997543221 589999999999999999999999
Q ss_pred HhccHHHHHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChhhhhh
Q 001539 695 LLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAI 774 (1057)
Q Consensus 695 Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt~~AI 774 (1057)
||++|+||+||+. ++++||||||||||||||||++|||+||+||++|++||++|||+++|||||||||||||||+|+||
T Consensus 422 ll~~p~yr~~l~~-~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGp~~~ai 500 (794)
T PF00311_consen 422 LLSNPAYRAHLKA-RGNRQEVMLGYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFFHGRGGSVGRGGGPTHRAI 500 (794)
T ss_dssp HCCSHHHHHHCTT----EEEEEEECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEEEESSTCGGCTHHHHHHHH
T ss_pred HHcCHHHHHHHhc-CcceEEEEeccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCcccCCCChHHHHH
Confidence 9999999999966 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcccccccccccchhhhhcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhccC
Q 001539 775 QSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYEN 854 (1057)
Q Consensus 775 laqP~gsv~g~iRvTEQGEvI~~kyg~~~lA~rnLE~~~aa~l~as~~~~~~~~~~~~~~~md~ls~~S~~~YR~lv~~~ 854 (1057)
+|||+||++|+||+|||||||++|||+|++|.||||++++|+|.+++.++..+..++|+++|++||+.|+++||+|||++
T Consensus 501 ~aqP~gtv~g~ir~TeQGEvI~~ky~~~~~A~~~LE~~~~a~l~~~~~~~~~~~~~~~~~~m~~ls~~s~~~Yr~Lv~~~ 580 (794)
T PF00311_consen 501 LAQPPGTVNGRIRITEQGEVISAKYGNPEIAQRNLEQLTAAVLEASLRPPPEPPPPEWRELMEELSEASFKAYRALVYEN 580 (794)
T ss_dssp HTS-TTTTTTEEEEEEECHHHHHHHSSHHHHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HhCCCCccCCceEEeechHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999887766558999999999999999999999999
Q ss_pred cchHHHHHhhCchhHhhcCCCCCCCCccCCCCCCCcccccchhhhhhhhcccccchhhhhHHHHHh--hhCCCHHHHHHH
Q 001539 855 PEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGV--CDKGNTEDLKAM 932 (1057)
Q Consensus 855 p~F~~yF~~aTPi~ei~~LnIGSRPakR~~~~~ledLRAIPWVFsWtQ~R~~LPgWyGvGsAL~~~--~~~~~~~~L~~M 932 (1057)
|+|++||+++|||+||+.||||||||||++..+++|||||||||||||+|++||||||||+||+++ .++++++.||+|
T Consensus 581 p~F~~yf~~aTPi~ei~~lnIGSRPa~R~~~~~l~dLRAIPWVFsWtQ~R~~lpgWyG~Gsal~~~~~~~~~~~~~L~~m 660 (794)
T PF00311_consen 581 PGFLEYFRQATPIDEIGKLNIGSRPAKRKGERSLEDLRAIPWVFSWTQSRFNLPGWYGVGSALEEFIQEDPGGLEQLQEM 660 (794)
T ss_dssp CCHHHHHHHHS-HHHHHHCS-SSS---------GCTS-CHHHHHHHHHTT--HHHCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCcHHHHHhcCHHHHHHhccccCCCccCCCCCCCCcCCcCceeeeeeccccccceeecccHHHHHHHccCcchHHHHHHH
Confidence 999999999999999999999999999999889999999999999999999999999999999998 455789999999
Q ss_pred HhcChhHHHHHHHHHHHHHhccHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHHHHHHhCCCccccCChhHHHHHHhh
Q 001539 933 YKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESR 1011 (1057)
Q Consensus 933 y~~wPfFrt~ldnvemaLaKaDl~Ia~~Y~~Ll~d~~-~~~i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~~R 1011 (1057)
|++||||+++|||++|+|+||||.||++|++|++|++ +++||+.|++||++|+++||+|||+++||+++|+|++||++|
T Consensus 661 y~~wpfF~~~idn~~m~laK~d~~ia~~Y~~l~~~~~~~~~i~~~i~~E~~~T~~~~l~itg~~~ll~~~p~l~~si~~R 740 (794)
T PF00311_consen 661 YREWPFFRTLIDNVEMSLAKADMDIAKRYAELVPDKELRQRIFEQIRDEYERTKEMLLAITGQKELLDNNPVLQRSIQLR 740 (794)
T ss_dssp HHH-HHHHHHHHHHHHHHCC--HHHHHHCHHHCS-CC-CHHHHHHHHHHHHHHHHHHHHHHT-SSTTTT-HHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCChHHHHHHHHH
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred hccccccHHHHHHHHHHHhcCCC--------chhHHHHHHHHHHHHHhhhccCC
Q 001539 1012 LPYLNPMNMLQVEILKRLRQDDD--------NHKLRDALLITINGIAAGMRNTG 1057 (1057)
Q Consensus 1012 ~pyvdpLn~lQvelL~r~R~~~~--------~~~l~~all~TInGIAaGlrNTG 1057 (1057)
||||||||++||++|||+|+.++ ++.+.++|++|||||||||||||
T Consensus 741 ~pyv~pLn~~Qv~lL~r~R~~~~~~~~~~~~~~~~~~~l~~tingIAaglrnTG 794 (794)
T PF00311_consen 741 NPYVDPLNYLQVELLKRLREGDDQQPADPEEDERLEDALLLTINGIAAGLRNTG 794 (794)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCH---TT-SS-CCHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccccCcccchHHHHHHHHHHHHHHHHcccCC
Confidence 99999999999999999998644 46699999999999999999999
No 5
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=3.2e-79 Score=701.36 Aligned_cols=296 Identities=19% Similarity=0.244 Sum_probs=258.5
Q ss_pred HhCccccchhhhcCCCChHhHHHHHHHHHHhc--ccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHH
Q 001539 626 ELGSDSLGAYVISMASNASDVLAVELLQKDAR--LAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRK 703 (1057)
Q Consensus 626 ~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeag--l~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~ 703 (1057)
.+|+++|+.||||||+++||||+|++|+|++| +......+. ...+.|+|||||||++||.||+.||++||+++.+
T Consensus 116 ~~~~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~-~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~-- 192 (494)
T PRK13655 116 SFYTQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGE-FEPKEIEVIPLFEDADALLNADEILEEYLKAKKP-- 192 (494)
T ss_pred hcCchhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCC-CCcCCcceECCcCCHHHHHhHHHHHHHHHhchhh--
Confidence 45799999999999999999999999999999 764321111 1135899999999999999999999999999633
Q ss_pred HHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCh--hhhhhhcCCCCC
Q 001539 704 HIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGP--TYLAIQSQPPGS 781 (1057)
Q Consensus 704 ~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGP--t~~AIlaqP~gs 781 (1057)
+++.||||||||||+||||+++|+|++|+||++|.++++++||++++|||||||||||||| ++.+|++||+
T Consensus 193 -----~~~~qeVmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~fhGrGg~~~RGGgpp~~~~ail~q~~-- 265 (494)
T PRK13655 193 -----HGKYLRVFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPILGVGSLPFRGHLSPENLENVLEEYP-- 265 (494)
T ss_pred -----cCCeeEEEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCCChHHHHHHHhCCC--
Confidence 2478999999999999999999999999999999999999999999999999999999998 8899999996
Q ss_pred cccccccccccchhhhhcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhccCcchHHHH
Q 001539 782 VMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYF 861 (1057)
Q Consensus 782 v~g~iRvTEQGEvI~~kyg~~~lA~rnLE~~~aa~l~as~~~~~~~~~~~~~~~md~ls~~S~~~YR~lv~~~p~F~~yF 861 (1057)
|.+|+|||| +.||+.|. ..+...+.++++++..++..+ .++|+++|++|++.|+++||++|+++|+|+.||
T Consensus 266 --g~~r~TeQg---a~rY~~~~---e~~~~av~~~~~~~~~~p~~~-~~~~~~~m~~la~~s~~~Yr~~V~~~~~fv~yf 336 (494)
T PRK13655 266 --GVYTFTVQS---AFRYDYPY---EEVKKAIEEINEKLIAPPRIL-SEEDKEELLEIIEKYSERYQSQIEKLADTINRV 336 (494)
T ss_pred --CCeEEEecc---ccccCCCH---HHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 669999999 58999986 233333444446666666555 489999999999999999999999999999999
Q ss_pred HhhCchhHhhcCCCCCCCCccCCCCCCCcccccchhhhhhhhcccccchhhhhHHHHHhhhCCCHHHHHHHH----hcCh
Q 001539 862 NEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMY----KEWP 937 (1057)
Q Consensus 862 ~~aTPi~ei~~LnIGSRPakR~~~~~ledLRAIPWVFsWtQ~R~~LPgWyGvGsAL~~~~~~~~~~~L~~My----~~wP 937 (1057)
+++||..++++|||||||+||+. +++++||||||||||+|+| ++|+|||+|+||+.+++ ++++.|.++| ++|.
T Consensus 337 ~~~tP~~r~r~L~iGsrp~~R~~-~gie~lRAIpwvfAw~q~r-~~P~wlG~g~aL~~~~~-~~ld~l~~~yp~l~~dl~ 413 (494)
T PRK13655 337 AKLIPKRRDRKLHIGLFGYSRSV-GGVSLPRAISFTGALYSIG-LPPELIGAGRLLELAKE-DDLDILLENYPNLKKDLE 413 (494)
T ss_pred HHcCcHHHHhhccccCCCCCCCC-CCCCCCCccCchhhhhhCC-CChHHHhHHHHHHHHHH-hHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999985 6799999999999999999 99999999999998876 4688888877 5565
Q ss_pred hHHHHH
Q 001539 938 FFQSTI 943 (1057)
Q Consensus 938 fFrt~l 943 (1057)
|...++
T Consensus 414 ~a~~y~ 419 (494)
T PRK13655 414 FAARFF 419 (494)
T ss_pred HHHHhc
Confidence 544443
No 6
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=100.00 E-value=1.4e-47 Score=440.86 Aligned_cols=300 Identities=19% Similarity=0.231 Sum_probs=237.1
Q ss_pred hCcc--ccchhhhcCCCChHhHHHHHHHHHHhcc-------------cccCCCCCCCCCCCCccccCCCCHHHHhcHHHH
Q 001539 627 LGSD--SLGAYVISMASNASDVLAVELLQKDARL-------------AVSGELGRPCPGGTLRVVPLFETVTDLRGAGLV 691 (1057)
Q Consensus 627 ~g~~--a~g~yIISmt~s~SDvL~Vl~Lakeagl-------------~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~I 691 (1057)
+|.. .|-=.|||||+++||||+|+.|+|++|+ .... | ....+.|+|||||||++||.||+.|
T Consensus 116 ~~~~~~pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~--~-~~~~~~i~VIPLFEt~~dL~~a~~I 192 (506)
T TIGR02751 116 YDERIAPIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWL--G-EFKPKKIRVIPLIEDKDSLLNADEI 192 (506)
T ss_pred cCCCCCceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhccc--c-cCCCCCcCeecCcCCHHHHHhHHHH
Confidence 3666 6777899999999999999999999986 1110 1 1113589999999999999999999
Q ss_pred HHHHhccHHHHHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCC-hh
Q 001539 692 IRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGG-PT 770 (1057)
Q Consensus 692 m~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGG-Pt 770 (1057)
|++||+ ++ . .+.|+||||||||+||+|+++|+|++|+||++|.++|+++||++++|||||||+||||| |+
T Consensus 193 l~~~l~------~~-~--~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pfhGrGgspfRGGg~P~ 263 (506)
T TIGR02751 193 VKEYAE------AH-E--PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPIIGAGSLPFRGHLSPE 263 (506)
T ss_pred HHHHHH------hc-C--cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeecCCCCcCCCCChh
Confidence 999998 44 2 45599999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhh-hhcCCCCCcccccccccccchhhhhcCCHHHHHHHHHHHHHHHHHh---cCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 001539 771 YLA-IQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLA---TMRPPQPPREEKWRNLMEEISKISCQN 846 (1057)
Q Consensus 771 ~~A-IlaqP~gsv~g~iRvTEQGEvI~~kyg~~~lA~rnLE~~~aa~l~a---s~~~~~~~~~~~~~~~md~ls~~S~~~ 846 (1057)
+.+ +++||| |.+|+|||| +.||+.|. |++++|++.. ...+++.+ .++|+++|+++++.|+++
T Consensus 264 n~a~il~qpp----G~~t~TeQs---afRYd~p~------e~v~~Av~~~~~a~~~~~~~~-~~e~~e~m~~ia~~s~~~ 329 (506)
T TIGR02751 264 NIERVLDEYP----GVYTFTVQS---AFKYDYPR------EEVVAAIRRINEKLPNAPPIL-IDEEEEIIVEIIEIYAKR 329 (506)
T ss_pred hHHHHHhcCC----CceEEeeec---hhhcCCCH------HHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 999 999998 899999999 99999999 9999999943 34344433 489999999999999999
Q ss_pred hhhhhccCcchHHHHHhhCchhHhhcCCCCCCCCccCCCCCCCcccccchhhhhhhhcccccchhhhhHHHHHhhhCCCH
Q 001539 847 YRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNT 926 (1057)
Q Consensus 847 YR~lv~~~p~F~~yF~~aTPi~ei~~LnIGSRPakR~~~~~ledLRAIPWVFsWtQ~R~~LPgWyGvGsAL~~~~~~~~~ 926 (1057)
||++|.+--+.+......-|=.-=-++.||-===+|.- ++++==|||-++.||-=.+.+ |-..|+| +|..+.+ +++
T Consensus 330 Yr~~V~~la~~in~ia~~iP~rR~RklhiGlfgYsR~~-~~~~lPRAI~Ft~alYSiG~P-PeliG~~-~L~~~~~-~~l 405 (506)
T TIGR02751 330 YQKIIEKLAPTINRIASYIPKRRDRKLHVGLFGYSRSV-GGVSLPRAIKFTGALYSIGLP-PELIGIG-SLSELDE-DDL 405 (506)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhhhccCcccccCC-CCCCCCchhhhhhhhhhcCCC-hHHhChh-hhhhcch-hHH
Confidence 99999655555555554444333333333321112321 235667999999999866654 7899999 7887653 346
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHhccHHHHHHHH
Q 001539 927 EDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYD 962 (1057)
Q Consensus 927 ~~L~~My~~wPfFrt~ldnvemaLaKaDl~Ia~~Y~ 962 (1057)
+.|.+. |.++-+-++-+..-.|++.++.|.
T Consensus 406 ~~l~~~------yp~l~~dl~~a~~y~n~~~~~~l~ 435 (506)
T TIGR02751 406 EVIKEL------YPNLRSDLSFAARYLNPESADSLK 435 (506)
T ss_pred HHHHHH------hhhHHHHHHHHHHhcCHHHHHHHh
Confidence 666653 345556667777777888887764
No 7
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=98.73 E-value=1.2e-07 Score=111.08 Aligned_cols=271 Identities=21% Similarity=0.249 Sum_probs=168.5
Q ss_pred CccccchhhhcCCCChHhHHHHHHHHHHhcc---------cccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhcc
Q 001539 628 GSDSLGAYVISMASNASDVLAVELLQKDARL---------AVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSI 698 (1057)
Q Consensus 628 g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl---------~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~ 698 (1057)
+...+-=.|.=||+|+.+|..|..+.+..-. ......|. .....+.|+||||+.+.+-|++.|++.++
T Consensus 117 ~~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~-~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~-- 193 (491)
T PF14010_consen 117 DVQPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGE-FDPEEIEVIPLFEDVDSLLNADEILEEYL-- 193 (491)
T ss_dssp SS-S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS----TTSSEEEEEE-SHHHHHTHHHHHHHHH--
T ss_pred cCcchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccc-cCcCcceEeeccccHHHHhcHHHHHHHHH--
Confidence 6667777788999999999999877653321 11011122 22368999999999999999999999988
Q ss_pred HHHHHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChh--hhhhhc
Q 001539 699 DWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPT--YLAIQS 776 (1057)
Q Consensus 699 p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt--~~AIla 776 (1057)
+.. ...-..|-|+||=|||.=--|.++|....=-|-.+|.++.++.||++-=.=|-|..+=|||=.- ...++.
T Consensus 194 ----~~~-g~~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~GS~PFRG~l~p~~~~~~~~ 268 (491)
T PF14010_consen 194 ----KDK-GRDPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGVGSPPFRGGLSPPNVERVLE 268 (491)
T ss_dssp ----HHT-T---SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-BSSGGGT---TTGHHHHHH
T ss_pred ----HHh-cCCchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeeccCCCCcCCCCChHhHHHHHH
Confidence 222 1023589999999999999999999999999999999999999999999999999999999642 222444
Q ss_pred CCCCCcccccccccccchhhhhcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhccCcc
Q 001539 777 QPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPE 856 (1057)
Q Consensus 777 qP~gsv~g~iRvTEQGEvI~~kyg~~~lA~rnLE~~~aa~l~as~~~~~~~~~~~~~~~md~ls~~S~~~YR~lv~~~p~ 856 (1057)
+= .|--.+|.|- +.||..|.--..+.=..+ ....-..+..- .++..+.+-.+.+.+.+.|+..|.+--+
T Consensus 269 EY----~gv~T~TIQS---AfrYD~p~~~v~~ai~~l---~~~~~~~p~~~-~~ee~~~~~~ii~~~s~~Y~~~i~~la~ 337 (491)
T PF14010_consen 269 EY----PGVYTFTIQS---AFRYDYPYEEVIKAIEKL---NEAPRKKPRII-DEEEEEILLEIIEKYSAEYRSQIEKLAP 337 (491)
T ss_dssp HT----TT-SEEEE-H---HHHHTTHHHHHHHHHHHH---HHGGG--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc----CCeeEEEeee---hhhcCCCHHHHHHHHHHH---HhcccCCcccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3446778886 678887754433322211 11111112222 2555678899999999999998743222
Q ss_pred hHHHHHhhCchhHhhcCCCCCCCCccCCC------------CCCCcccccchhhhhhhhcccccchhhhhHHHHHhhhCC
Q 001539 857 FLAYFNEATPQAELGYLNIGSRPTRRKSS------------TGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKG 924 (1057)
Q Consensus 857 F~~yF~~aTPi~ei~~LnIGSRPakR~~~------------~~ledLRAIPWVFsWtQ~R~~LPgWyGvGsAL~~~~~~~ 924 (1057)
. |++++.+= |.+|... +++.==|||.++.||-=.+.+ |-..|+|+.++...+
T Consensus 338 ~---------In~va~~v----P~rR~RklhiGlfgYsR~~~~~~LPRAI~FtaalYSiGlP-PEllg~~~ll~l~~~-- 401 (491)
T PF14010_consen 338 T---------INRVARYV----PKRRDRKLHIGLFGYSRSVGGVNLPRAITFTAALYSIGLP-PELLGLGRLLELSKE-- 401 (491)
T ss_dssp H---------HHHHHTTS-------S-B----------EEE--HE---HHHHHHHHHHTT---GGGTTHHHHHHHHHH--
T ss_pred H---------HHHHHHhC----CchhhHHhhhcccccccccCCccCcchhhhhhhHHhcCCC-HHHhchHHHHHHhHH--
Confidence 2 44444332 3343211 123446999999999877654 889999999975432
Q ss_pred CHHHHHHHH
Q 001539 925 NTEDLKAMY 933 (1057)
Q Consensus 925 ~~~~L~~My 933 (1057)
+++.|.+.|
T Consensus 402 ~l~~l~~~y 410 (491)
T PF14010_consen 402 ELDVLLEYY 410 (491)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 355555443
No 8
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=97.92 E-value=0.00068 Score=78.56 Aligned_cols=309 Identities=18% Similarity=0.217 Sum_probs=199.7
Q ss_pred HhHHHHHHHHHHHHH-------h--CccccchhhhcCCCChHhHHHHHHHHHHh---------cccccCCCCCCCCCCCC
Q 001539 612 SDVKEVLDTFRVAAE-------L--GSDSLGAYVISMASNASDVLAVELLQKDA---------RLAVSGELGRPCPGGTL 673 (1057)
Q Consensus 612 ~~~~evl~tf~~i~~-------~--g~~a~g~yIISmt~s~SDvL~Vl~Lakea---------gl~~~~~~g~~~~~~~l 673 (1057)
.+.+-.+.|+.+|+. + +...|--.|.=||+|+..++.|.-.-+.+ |.......|.-. ..-|
T Consensus 96 ~erkll~e~l~~i~~s~d~a~~f~~d~~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~-P~~I 174 (488)
T COG1892 96 AERKLLLETLESIARSYDYARVFYGDVAPIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFI-PKLI 174 (488)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhccccccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhcccc-HHHH
Confidence 445556667777663 2 24456667999999999999998655422 221111112111 1358
Q ss_pred ccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeE
Q 001539 674 RVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKV 753 (1057)
Q Consensus 674 ~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l 753 (1057)
.|+||||+++.|-+|..|.... .....-..|-|.||=||+.=.=|.++|....-+|-.+|.++-++-||++
T Consensus 175 eviPl~e~~~~ll~a~~i~~~y---------~~g~~~e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i 245 (488)
T COG1892 175 EVIPLFEDRESLLKAALIVGEY---------AEGRDPEYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPI 245 (488)
T ss_pred hhhHhHhhHHHHHHHHHHHHHH---------HhcCCchhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 8999999999999999887762 2121234688999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCChhhhh--hhcCCCCCcccccccccccchhhhhcCCH-HHHHHHHHHHHHHHHHhcCCCCCCCCcH
Q 001539 754 TLFHGRGGSIGRGGGPTYLA--IQSQPPGSVMGTLRSTEQGEMVQAKFGLP-QTAVRQLEIYTTAVLLATMRPPQPPREE 830 (1057)
Q Consensus 754 ~~FHGRGGSvGRGGGPt~~A--IlaqP~gsv~g~iRvTEQGEvI~~kyg~~-~lA~rnLE~~~aa~l~as~~~~~~~~~~ 830 (1057)
--.-|-|..+=||+---+.+ .+.+=+ |--..|.|- +.||..+ .-+.+-.+.+-+.-. +. .. +
T Consensus 246 ~PI~G~Gs~PFRG~l~P~n~e~~~~EY~----gv~T~TvQS---afkYD~~~~~v~~~i~~i~~~~~------~~-~s-~ 310 (488)
T COG1892 246 YPILGVGSLPFRGHLRPENAENVLEEYA----GVYTYTVQS---AFKYDHEYGDVVKAIERIKSVKR------ER-LS-A 310 (488)
T ss_pred cceecCCCCCcCCCCChhhhHHHHHHcC----CceEEEEee---cccccCCHHHHHHHHHHHHhhcc------cc-cc-c
Confidence 99999999999997665443 444443 445677776 5666643 445555555433221 11 11 1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCcchHHHHHhhCchhHhhcCCCCCCCCccCCCCCCCcccccchhhhhhhhcccccch
Q 001539 831 KWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAW 910 (1057)
Q Consensus 831 ~~~~~md~ls~~S~~~YR~lv~~~p~F~~yF~~aTPi~ei~~LnIGSRPakR~~~~~ledLRAIPWVFsWtQ~R~~LPgW 910 (1057)
...+-.-.+...-++.||..|..=-+-+.-....-|-.---+|.||.+==+|.- +.++==|||-+..||-=.+++ |-.
T Consensus 311 ~~~e~~~~~i~~~~~~Y~~~i~~la~~Inrla~~iP~rR~RklHvGlfGYsR~~-g~~~LPRAI~fTaslYsiG~P-PeL 388 (488)
T COG1892 311 YEEEELLAVITIYEEEYRRQIRILAGTINRLADRIPDRRDRKLHVGLFGYSRSI-GELSLPRAIKFTASLYSIGVP-PEL 388 (488)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhcCcccccccC-CcccCcchheeehhhhhcCCC-HHH
Confidence 112334445556678899877433333333333444444455777776666642 245667999999999766543 778
Q ss_pred hhhhHHHHHhhhCCCHHHHHHHHhcChhHHHHHHHHHHHHHhccHH
Q 001539 911 LGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTH 956 (1057)
Q Consensus 911 yGvGsAL~~~~~~~~~~~L~~My~~wPfFrt~ldnvemaLaKaDl~ 956 (1057)
.|+|.... +.+.++.+.+.| -.+.+.++-+..-.+++
T Consensus 389 lG~~~ls~---~d~~~~~v~e~y------p~~~~dL~fA~ry~~~e 425 (488)
T COG1892 389 LGTGALSN---DDADLDVVSEYY------PNLVEDLEFAARYFNPE 425 (488)
T ss_pred hcchhccc---ccchHHHHHHHh------hhHHHHHHHHHHhcCHh
Confidence 89887774 233455565543 33444444444444443
No 9
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=96.03 E-value=0.021 Score=61.39 Aligned_cols=167 Identities=18% Similarity=0.238 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCccccccccccchh------HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcC--CCCCCCCCCCCC
Q 001539 540 GDLIRRVVTFGMVLMKLDLRQESG------RHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKG--KRPLVPPTIEVP 611 (1057)
Q Consensus 540 ~~lir~v~~FGfhla~LDIRQnS~------~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~--~rpl~~~~~~~s 611 (1057)
..++..+...||...-+|+ +|+. .-...+.+++.. + ...+. ..+++..+..-+
T Consensus 11 ~~~~~~a~~~g~D~vilDl-Ed~~~~~~K~~ar~~~~~~~~~-----------------~-~~~~~~~~~~~VRvn~~~~ 71 (221)
T PF03328_consen 11 PKMLEKAAASGADFVILDL-EDGVPPDEKDEAREDLAEALRS-----------------I-RAARAAGSEIIVRVNSLDS 71 (221)
T ss_dssp HHHHHHHHTTCSSEEEEES-STTSSGGGHHHHHHHHHHHHHH-----------------H-HHHTTSSSEEEEE-SSTTC
T ss_pred HHHHHHHHhcCCCEEEEeC-cccCCcccchhhHHHHHHHHHh-----------------h-cccccccccceecCCCCCc
Confidence 3466777788999999998 5554 111111111110 0 01111 233444443334
Q ss_pred HhHHHHHHHHHHHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHH
Q 001539 612 SDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLV 691 (1057)
Q Consensus 612 ~~~~evl~tf~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~I 691 (1057)
....+-|. +...|.+ ..++-|++|+.|+..+.-+.+..-.-. +. ....+.|+|+.||.+.++|+++|
T Consensus 72 ~~~~~Dl~----~l~~g~~---gI~lP~ves~~~~~~~~~~~~~~~~~~----~~--~~~~~~i~~~IET~~gv~~~~eI 138 (221)
T PF03328_consen 72 PHIERDLE----ALDAGAD---GIVLPKVESAEDARQAVAALRYPPAGR----RG--ANGSTKIIPMIETPEGVENLEEI 138 (221)
T ss_dssp HHHHHHHH----HHHTTSS---EEEETT--SHHHHHHHHHHHSHTTTCT----TT--HHCHSEEEEEE-SHHHHHTHHHH
T ss_pred chhhhhhh----hcccCCC---eeeccccCcHHHHHHHHHHHhhccccc----cc--ccCceEEEEeeccHHHHhCHHhh
Confidence 44454333 3345554 569999999999999999988432110 10 12478999999999999999999
Q ss_pred HHHHhccHHHHHHHhhhcCCeEEEEeecccCCcchhhhh--hhHHHHHHHHHHHHHHHHcCCeE
Q 001539 692 IRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFT--AAWELYKAQEDVVAACNEFGIKV 753 (1057)
Q Consensus 692 m~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~la--A~W~LyrAQ~~L~~va~~~gV~l 753 (1057)
+ . ..+.--|++|..|=..+-|.-. ....+..+..+++..|+++|+..
T Consensus 139 ~-a--------------~~~v~~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~ 187 (221)
T PF03328_consen 139 A-A--------------VPGVDGLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPA 187 (221)
T ss_dssp H-T--------------STTEEEEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEE
T ss_pred c-c--------------cCCeeEEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCe
Confidence 8 3 2577889999999999999874 56789999999999999999843
No 10
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.88 E-value=0.023 Score=63.02 Aligned_cols=168 Identities=16% Similarity=0.221 Sum_probs=109.3
Q ss_pred HHHHHcCccccccccccchhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHhHHHHHHHHHH
Q 001539 544 RRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRV 623 (1057)
Q Consensus 544 r~v~~FGfhla~LDIRQnS~~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~evl~tf~~ 623 (1057)
..+..-||.++-+|. ||+..-...+..+++.+.. ....|++.....-....+.+|+
T Consensus 34 e~~a~~G~D~v~iD~-EHg~~~~~~~~~~i~a~~~-------------------~g~~~lVRvp~~~~~~i~r~LD---- 89 (256)
T PRK10558 34 EVLGLAGFDWLVLDG-EHAPNDVSTFIPQLMALKG-------------------SASAPVVRVPTNEPVIIKRLLD---- 89 (256)
T ss_pred HHHHhcCCCEEEEcc-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHhC----
Confidence 445567999999998 7887666666666543211 1222343332222223333333
Q ss_pred HHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccC-CC-------CC-----CCCCCCCccccCCCCHHHHhcHHH
Q 001539 624 AAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSG-EL-------GR-----PCPGGTLRVVPLFETVTDLRGAGL 690 (1057)
Q Consensus 624 i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~-~~-------g~-----~~~~~~l~VvPLFETi~DL~~a~~ 690 (1057)
.|...+ |+.|.+|+.++-++.-.+|..-+-..+ .. |. ......+.|+|+.||.+.++|+.+
T Consensus 90 ---~Ga~gi---ivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~e 163 (256)
T PRK10558 90 ---IGFYNF---LIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDA 163 (256)
T ss_pred ---CCCCee---eecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHHH
Confidence 355544 888888888888888888753110000 00 00 000135779999999999999999
Q ss_pred HHHHHhccHHHHHHHhhhcCCeEEEEeecccCCcchhhhh--hhHHHHHHHHHHHHHHHHcCCeEEEe
Q 001539 691 VIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFT--AAWELYKAQEDVVAACNEFGIKVTLF 756 (1057)
Q Consensus 691 Im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~la--A~W~LyrAQ~~L~~va~~~gV~l~~F 756 (1057)
|+.. .+.--||+|..|=+.+-|... ..=++..+..++...|+++|+.+-+|
T Consensus 164 I~av---------------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~ 216 (256)
T PRK10558 164 IAAT---------------EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL 216 (256)
T ss_pred HhCC---------------CCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc
Confidence 9852 456779999999888888643 22368889999999999999988554
No 11
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=95.61 E-value=0.048 Score=60.31 Aligned_cols=168 Identities=16% Similarity=0.212 Sum_probs=109.1
Q ss_pred HHHHHcCccccccccccchhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHhHHHHHHHHHH
Q 001539 544 RRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRV 623 (1057)
Q Consensus 544 r~v~~FGfhla~LDIRQnS~~H~~al~ei~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~evl~tf~~ 623 (1057)
..+...||.++-+|. ||+..-...+..+++.+.. ....|++.....-....+.+||
T Consensus 27 e~~a~~G~D~v~iD~-EHg~~~~~~~~~~~~a~~~-------------------~g~~~~VRvp~~~~~~i~r~LD---- 82 (249)
T TIGR03239 27 EVLGLAGFDWLLLDG-EHAPNDVLTFIPQLMALKG-------------------SASAPVVRPPWNEPVIIKRLLD---- 82 (249)
T ss_pred HHHHhcCCCEEEEec-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHhc----
Confidence 444567899999998 7887776766666543211 2223444332222223333333
Q ss_pred HHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCC--------CC-----CCCCCCCccccCCCCHHHHhcHHH
Q 001539 624 AAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGEL--------GR-----PCPGGTLRVVPLFETVTDLRGAGL 690 (1057)
Q Consensus 624 i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~--------g~-----~~~~~~l~VvPLFETi~DL~~a~~ 690 (1057)
.|... .|+.|.+|+.|+-++.-.+|..-+-..+-+ |. ......+.|+|+.||.+.++|+.+
T Consensus 83 ---~Ga~g---IivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~e 156 (249)
T TIGR03239 83 ---IGFYN---FLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDE 156 (249)
T ss_pred ---CCCCE---EEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHH
Confidence 35544 388888888888888887775421000000 00 000135779999999999999999
Q ss_pred HHHHHhccHHHHHHHhhhcCCeEEEEeecccCCcchhhhh--hhHHHHHHHHHHHHHHHHcCCeEEEe
Q 001539 691 VIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFT--AAWELYKAQEDVVAACNEFGIKVTLF 756 (1057)
Q Consensus 691 Im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~la--A~W~LyrAQ~~L~~va~~~gV~l~~F 756 (1057)
|+.. .+.--||+|-.|=+.+-|... ..=++..+..++...|+++|+.+-+|
T Consensus 157 I~av---------------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~ 209 (249)
T TIGR03239 157 IAAV---------------DGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL 209 (249)
T ss_pred HhCC---------------CCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 9852 456679999999888887643 22378889999999999999998654
No 12
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=92.02 E-value=0.68 Score=55.88 Aligned_cols=99 Identities=22% Similarity=0.298 Sum_probs=79.0
Q ss_pred HHHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHH
Q 001539 622 RVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWY 701 (1057)
Q Consensus 622 ~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Y 701 (1057)
+.+...|.+ ...+|.++++.||-.+--+..+++. ..+.|+++.||.+.++|..+|+.. .
T Consensus 178 ~~~~~~~~d---~I~lskV~sa~dv~~l~~~l~~~~~------------~~~~Iia~IEt~~av~nl~eI~~~--~---- 236 (473)
T TIGR01064 178 KFGVEQGVD---MVAASFVRTAEDVLEVREVLGEKGA------------KDVKIIAKIENQEGVDNIDEIAEA--S---- 236 (473)
T ss_pred HHHHHCCCC---EEEECCCCCHHHHHHHHHHHHhcCC------------CCceEEEEECCHHHHHhHHHHHhh--C----
Confidence 444455544 4789999999999988877654331 247799999999999999999976 1
Q ss_pred HHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEe
Q 001539 702 RKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLF 756 (1057)
Q Consensus 702 r~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~F 756 (1057)
. -||+|-.|=+.+-|. =++..+|.+++..|+++|+.+.++
T Consensus 237 --------d---gi~iG~gDL~~~lg~----~~l~~~~~~ii~aaraag~pvi~a 276 (473)
T TIGR01064 237 --------D---GIMVARGDLGVEIPA----EEVPIAQKKMIRKCNRAGKPVITA 276 (473)
T ss_pred --------C---cEEEchHHHHhhcCc----HHHHHHHHHHHHHHHHcCCCEEEE
Confidence 1 599999999999993 467889999999999999986653
No 13
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=89.77 E-value=0.88 Score=51.39 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=77.2
Q ss_pred cchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCC
Q 001539 632 LGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNG 711 (1057)
Q Consensus 632 ~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~ 711 (1057)
+..+++.|++++.|+-.+.-+.++..-. .|.. ...+.|+|+.||...+.|+.+|... ..+
T Consensus 86 ~~givlPKv~s~~~v~~~~~~l~~~~~~----~~~~--~~~~~i~~~IET~~gv~~~~eIa~a--------------~~r 145 (288)
T TIGR01588 86 VDVVRLPKTDTAEDIHELEKLIERIEKE----IGRE--VGSTKLMAAIESALGVVNAVEIARA--------------SKR 145 (288)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHHHHh----cCCC--CCCeeEEEEeCCHHHHHhHHHHHhc--------------CCc
Confidence 3459999999999999998666642211 1111 1368899999999999999888742 145
Q ss_pred eEEEEeecccCCcchhhhh-hh-HHHHHHHHHHHHHHHHcCCeE
Q 001539 712 HQEVMVGYSDSGKDAGRFT-AA-WELYKAQEDVVAACNEFGIKV 753 (1057)
Q Consensus 712 ~QeVMlGYSDS~KDgG~la-A~-W~LyrAQ~~L~~va~~~gV~l 753 (1057)
.--+++|-.|=.-|-|.-. .. -+++.+..+++..|+.+|+..
T Consensus 146 v~~l~~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~ 189 (288)
T TIGR01588 146 LMGIALGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAA 189 (288)
T ss_pred ceEEEeCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCc
Confidence 6679999999888887644 23 469999999999999999875
No 14
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=87.53 E-value=2.1 Score=47.45 Aligned_cols=108 Identities=17% Similarity=0.233 Sum_probs=76.2
Q ss_pred cchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCC-C--------------CCCCCccccCCCCHHHHhcHHHHHHHHh
Q 001539 632 LGAYVISMASNASDVLAVELLQKDARLAVSGELGRP-C--------------PGGTLRVVPLFETVTDLRGAGLVIRKLL 696 (1057)
Q Consensus 632 ~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~-~--------------~~~~l~VvPLFETi~DL~~a~~Im~~Ll 696 (1057)
....||-|.+|+.++-++.-.+|+.-.-..+ .|.. . ....+-|+|+.||.+.++|+.+|+..
T Consensus 85 a~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg-~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~-- 161 (249)
T TIGR02311 85 AQTLLVPMIETAEQAEAAVAATRYPPMGIRG-VGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAV-- 161 (249)
T ss_pred CCEEEecCcCCHHHHHHHHHHcCCCCCCcCC-CCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCC--
Confidence 3466889999999999888888843210000 0000 0 00146699999999999999999852
Q ss_pred ccHHHHHHHhhhcCCeEEEEeecccCCcchhhhh-hh-HHHHHHHHHHHHHHHHcCCeEEE
Q 001539 697 SIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFT-AA-WELYKAQEDVVAACNEFGIKVTL 755 (1057)
Q Consensus 697 ~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~la-A~-W~LyrAQ~~L~~va~~~gV~l~~ 755 (1057)
.+.=.||+|-+|=+.+-|... .. -.+..+-.++.+.|+++|+..-+
T Consensus 162 -------------~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi 209 (249)
T TIGR02311 162 -------------EGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGI 209 (249)
T ss_pred -------------CCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceee
Confidence 345579999999888888643 23 35777888889999999987744
No 15
>PRK05826 pyruvate kinase; Provisional
Probab=86.40 E-value=2.9 Score=50.52 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=78.0
Q ss_pred HHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHH
Q 001539 624 AAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRK 703 (1057)
Q Consensus 624 i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~ 703 (1057)
+.+.|.+ ..++||.+++.|+-++--+..++|- ..+.|++-.||.+.++|..+|++.
T Consensus 182 ald~g~d---~I~~sfV~saedv~~l~~~l~~~~~------------~~~~iiakIEt~eav~nldeI~~~--------- 237 (465)
T PRK05826 182 AAEQGVD---YIAVSFVRSAEDVEEARRLLREAGC------------PHAKIIAKIERAEAVDNIDEIIEA--------- 237 (465)
T ss_pred HHHCCCC---EEEECCCCCHHHHHHHHHHHHHcCC------------cCceEEEEEcCHHHHHhHHHHHHH---------
Confidence 3455554 5578999999999999777664331 157799999999999999999987
Q ss_pred HHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEE
Q 001539 704 HIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTL 755 (1057)
Q Consensus 704 ~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~ 755 (1057)
+ . .||+|-.|=+-+-| .-.+..+|+++.+.|+++|..+.+
T Consensus 238 -~----D---gImIgrgDLg~elg----~~~v~~~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 238 -S----D---GIMVARGDLGVEIP----DEEVPGLQKKIIRKAREAGKPVIT 277 (465)
T ss_pred -c----C---EEEECcchhhhhcC----cHhHHHHHHHHHHHHHHcCCCEEE
Confidence 2 2 49999999999988 458999999999999999987754
No 16
>PRK08187 pyruvate kinase; Validated
Probab=85.66 E-value=2.3 Score=51.71 Aligned_cols=114 Identities=18% Similarity=0.129 Sum_probs=84.5
Q ss_pred cchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCC
Q 001539 632 LGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNG 711 (1057)
Q Consensus 632 ~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~ 711 (1057)
+....+|.++|+.||..+--+..+.|-. + ...+.|+|..||...++|.++|+.. .....
T Consensus 325 vD~I~lSfV~saeDV~~l~~~L~~~~~~-----~----~~~~~IIaKIET~~gv~Nl~eI~~~------------ad~~~ 383 (493)
T PRK08187 325 ADLVGYSFVQSPGDVEALQAALAARRPD-----D----WRKLGLVLKIETPRAVANLPELIVQ------------AAGRQ 383 (493)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHhCCC-----C----CCCCeEEEEECCHHHHHHHHHHHHH------------hCcCC
Confidence 4457899999999999998887643310 0 1267899999999999999999975 11123
Q ss_pred eEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChh
Q 001539 712 HQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPT 770 (1057)
Q Consensus 712 ~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt 770 (1057)
.--||+|=-|=+-+-|+-. +-..|++++..|+.+|+.++.===-=.|+-..+=||
T Consensus 384 v~GImiARGDLgvEig~e~----~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PT 438 (493)
T PRK08187 384 PFGVMIARGDLAVEIGFER----LAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPS 438 (493)
T ss_pred CcEEEEEchHhhhhcCccc----ChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCc
Confidence 4579999999998888633 444599999999999999876433344555555565
No 17
>PLN02623 pyruvate kinase
Probab=85.47 E-value=3.8 Score=50.63 Aligned_cols=113 Identities=20% Similarity=0.241 Sum_probs=86.0
Q ss_pred HHHHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHH
Q 001539 621 FRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDW 700 (1057)
Q Consensus 621 f~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~ 700 (1057)
++...+.+-+. +-+|..++++||.++--+.+++| ..+.|++-.||.+.++|.++|++.
T Consensus 284 i~f~~~~~vD~---ialSFVr~a~DV~~~r~~l~~~~-------------~~~~iiakIEt~eaVeNldeIl~g------ 341 (581)
T PLN02623 284 IKFGVENKVDF---YAVSFVKDAQVVHELKDYLKSCN-------------ADIHVIVKIESADSIPNLHSIITA------ 341 (581)
T ss_pred HHHHHHcCCCE---EEECCCCCHHHHHHHHHHHHHcC-------------CcceEEEEECCHHHHHhHHHHHHh------
Confidence 33444555554 56799999999999998887543 246799999999999999999983
Q ss_pred HHHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChh
Q 001539 701 YRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPT 770 (1057)
Q Consensus 701 Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt 770 (1057)
+ . -||+|-.|=+-.-|. ..+-.+|+++.+.|+++|+.+..+==-=.|+---+.|+
T Consensus 342 ----~----D---gImIgrgDLgvelg~----~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PT 396 (581)
T PLN02623 342 ----S----D---GAMVARGDLGAELPI----EEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPT 396 (581)
T ss_pred ----C----C---EEEECcchhhhhcCc----HHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCC
Confidence 2 2 499999999999987 78889999999999999998864321223333444554
No 18
>PRK09206 pyruvate kinase; Provisional
Probab=83.40 E-value=6.2 Score=47.81 Aligned_cols=99 Identities=21% Similarity=0.246 Sum_probs=80.6
Q ss_pred HHHHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHH
Q 001539 621 FRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDW 700 (1057)
Q Consensus 621 f~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~ 700 (1057)
++...+.|-+.+ -.|..++++||.++--+..++|. ..+.|+.-.||.+.++|-++|++.
T Consensus 178 i~f~~~~~vD~i---a~SFVr~~~Dv~~~r~~l~~~~~------------~~~~iiaKIEt~eav~nldeIl~~------ 236 (470)
T PRK09206 178 LIFGCEQGVDFV---AASFIRKRSDVLEIREHLKAHGG------------ENIQIISKIENQEGLNNFDEILEA------ 236 (470)
T ss_pred HHHHHHcCCCEE---EEcCCCCHHHHHHHHHHHHHcCC------------CCceEEEEECCHHHHHhHHHHHHh------
Confidence 444445666543 46999999999999877764331 246799999999999999999987
Q ss_pred HHHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEE
Q 001539 701 YRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTL 755 (1057)
Q Consensus 701 Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~ 755 (1057)
. . .||+|-.|=+-.-| ...+-.+|+++.+.|+++|+.+..
T Consensus 237 ----~----D---gImVaRGDLgvelg----~e~vp~~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 237 ----S----D---GIMVARGDLGVEIP----VEEVIFAQKMMIEKCNRARKVVIT 276 (470)
T ss_pred ----C----C---EEEECcchhhhhcC----HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 2 2 49999999999988 788889999999999999998876
No 19
>PTZ00300 pyruvate kinase; Provisional
Probab=81.05 E-value=10 Score=45.90 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=79.3
Q ss_pred HHHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHH
Q 001539 622 RVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWY 701 (1057)
Q Consensus 622 ~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Y 701 (1057)
+.+.+.|.+. ..+||.+++.||-++--++...| ..+.|+.-.||.+.++|.++|++.
T Consensus 154 ~~ald~gvd~---I~~SfVrsaeDv~~vr~~l~~~~-------------~~~~IiaKIEt~eav~nldeI~~~------- 210 (454)
T PTZ00300 154 QFGVEQGVDM---IFASFIRSAEQVGEVRKALGAKG-------------GDIMIICKIENHQGVQNIDSIIEE------- 210 (454)
T ss_pred HHHHHCCCCE---EEECCCCCHHHHHHHHHHHHhcC-------------CCceEEEEECCHHHHHhHHHHHHh-------
Confidence 3344566664 45899999999999988885322 246799999999999999999954
Q ss_pred HHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEE
Q 001539 702 RKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTL 755 (1057)
Q Consensus 702 r~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~ 755 (1057)
. . -||+|--|=+-.-| ...+-.+|+++.+.|+++|+.+..
T Consensus 211 ---~----D---gImVaRGDLgvei~----~e~vp~~Qk~Ii~~~~~~gkpvI~ 250 (454)
T PTZ00300 211 ---S----D---GIMVARGDLGVEIP----AEKVVVAQKILISKCNVAGKPVIC 250 (454)
T ss_pred ---C----C---EEEEecchhhhhcC----hHHHHHHHHHHHHHHHHcCCCEEE
Confidence 2 2 49999999988888 788889999999999999998875
No 20
>PRK06354 pyruvate kinase; Provisional
Probab=80.05 E-value=9 Score=47.73 Aligned_cols=98 Identities=22% Similarity=0.306 Sum_probs=78.7
Q ss_pred HHHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHH
Q 001539 622 RVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWY 701 (1057)
Q Consensus 622 ~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Y 701 (1057)
+...+.+-+. +-.|..++++||.++--+..+.+ + ..+.|+.-.||.+.|+|.++|++.
T Consensus 185 ~f~~~~~vD~---ia~SFVr~~~dv~~~r~~l~~~~-------~-----~~~~iiaKIEt~eav~nldeI~~~------- 242 (590)
T PRK06354 185 IFGLEQGVDW---IALSFVRNPSDVLEIRELIEEHN-------G-----KHIPIIAKIEKQEAIDNIDAILEL------- 242 (590)
T ss_pred HHHHHcCCCE---EEEcCCCCHHHHHHHHHHHHHhc-------C-----CCceEEEEECCHHHHHhHHHHHHh-------
Confidence 3444555554 45699999999999987774211 1 257799999999999999999987
Q ss_pred HHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEE
Q 001539 702 RKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTL 755 (1057)
Q Consensus 702 r~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~ 755 (1057)
. . -||+|-.|=+-.-| ...+..+|+++.+.|+++|..+..
T Consensus 243 ---~----D---gImVaRGDLgve~g----~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 243 ---C----D---GLMVARGDLGVEIP----AEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred ---c----C---EEEEccchhhcccC----cHHHHHHHHHHHHHHHHcCCCEEE
Confidence 2 2 49999999999988 778888999999999999998875
No 21
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=78.49 E-value=6 Score=48.06 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=77.8
Q ss_pred HHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHH
Q 001539 623 VAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYR 702 (1057)
Q Consensus 623 ~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr 702 (1057)
...+.|-+ -+-+|..+++.||-.+--+.++++ ..+.|++-.||.+.++|.++|++.
T Consensus 182 f~~~~~vD---~ia~SFV~~~~di~~~r~~l~~~~-------------~~~~iiakIEt~~av~nldeI~~~-------- 237 (480)
T cd00288 182 FGVEQGVD---MIFASFVRKASDVLEIREVLGEKG-------------KDIKIIAKIENQEGVNNFDEILEA-------- 237 (480)
T ss_pred HHHHcCCC---EEEECCCCCHHHHHHHHHHHHhcC-------------CCceEEEEECCHHHHHhHHHHHHh--------
Confidence 44455555 345799999999999988887432 246689999999999999999987
Q ss_pred HHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEE
Q 001539 703 KHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTL 755 (1057)
Q Consensus 703 ~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~ 755 (1057)
+ . .||+|=.|=+-.-|. =.+-.+|+++.+.|+++|+.+..
T Consensus 238 --~----D---gImIargDLg~e~g~----~~v~~~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 238 --S----D---GIMVARGDLGVEIPA----EEVFLAQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred --c----C---EEEECcchhhhhcCh----HHHHHHHHHHHHHHHHcCCCEEE
Confidence 2 1 499999999888883 67788999999999999997764
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=76.60 E-value=11 Score=42.51 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=56.0
Q ss_pred CCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeEEEEeecccCCcchhhhh--hhHHHHHHHHHHHHHHHHc
Q 001539 672 TLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFT--AAWELYKAQEDVVAACNEF 749 (1057)
Q Consensus 672 ~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS~KDgG~la--A~W~LyrAQ~~L~~va~~~ 749 (1057)
.+-|++..||.+.++|..+|+.. .+.-.|++|=.|=+.+-|+.. -.=++..|-+++.+.|+++
T Consensus 145 ~~~vi~qiEt~~a~~n~~~I~~~---------------~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~ 209 (267)
T PRK10128 145 SLCLLVQVESKTALDNLDEILDV---------------EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAA 209 (267)
T ss_pred ccEEEEEECCHHHHHhHHHHhCC---------------CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 57789999999999999999853 467789999999888877532 1235668889999999999
Q ss_pred CCeEEEe
Q 001539 750 GIKVTLF 756 (1057)
Q Consensus 750 gV~l~~F 756 (1057)
|+.+-+|
T Consensus 210 Gk~~G~~ 216 (267)
T PRK10128 210 GKAAGFL 216 (267)
T ss_pred CCeEEEc
Confidence 9987543
No 23
>PRK06247 pyruvate kinase; Provisional
Probab=76.30 E-value=14 Score=44.92 Aligned_cols=94 Identities=21% Similarity=0.275 Sum_probs=77.6
Q ss_pred HHHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHH
Q 001539 622 RVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWY 701 (1057)
Q Consensus 622 ~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Y 701 (1057)
+...+.|-+. +-+|..++++||.++--+.. ..+.|++-.||.+.++|..+|++.
T Consensus 180 ~f~~~~~vD~---ia~SFVr~a~Di~~~r~~l~----------------~~~~iiaKIEt~eav~nldeI~~~------- 233 (476)
T PRK06247 180 EFALELGVDW---VALSFVQRPEDVEEVRKIIG----------------GRVPVMAKIEKPQAIDRLEAIVEA------- 233 (476)
T ss_pred HHHHHcCCCE---EEECCCCCHHHHHHHHHHhh----------------hcCeEEEEECCHHHHHhHHHHHHH-------
Confidence 3344555554 45799999999998877763 146689999999999999999987
Q ss_pred HHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEE
Q 001539 702 RKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTL 755 (1057)
Q Consensus 702 r~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~ 755 (1057)
. . .||+|=.|=+-.-|+ ..+..+|+++.+.|+++|..+..
T Consensus 234 ---~----D---gImVaRGDLgve~g~----~~v~~~qk~ii~~~~~~gkpvI~ 273 (476)
T PRK06247 234 ---S----D---AIMVARGDLGVEVPL----EQVPLIQKRIIRAARRAGKPVVV 273 (476)
T ss_pred ---c----C---EEEEccchhccccCH----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 1 2 499999999999997 88999999999999999998875
No 24
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=58.43 E-value=25 Score=34.36 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=44.2
Q ss_pred CCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChhhhhh
Q 001539 710 NGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAI 774 (1057)
Q Consensus 710 ~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt~~AI 774 (1057)
|-.+.+.++|.|+.-.. |........|.++.+++...++|-|-..|. |+|-|.+.
T Consensus 66 Gv~~~~~l~~~D~~~~~------~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~----gH~DH~~~ 120 (128)
T PF02585_consen 66 GVENVIFLDFPDGQLPG------WSWEELVRDLEDLIREFRPDVVFTPDPDDG----GHPDHRAV 120 (128)
T ss_dssp T-EEEEEEEECTTSCTC------HHHHHHHHHHHHHHHHH-ESEEEEE-STTS-----SHHHHHH
T ss_pred CCceEEEeecCCCCccc------ccHHHHHHHHHHHHHHcCCCEEEECCCCCC----CcHHHHHH
Confidence 44589999999998777 999999999999999998888888866666 99998864
No 25
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=57.13 E-value=9.3 Score=45.20 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=48.3
Q ss_pred cchhhhcCCCChHhHHHHHHHHHHhcccccCCC-----CCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHH
Q 001539 632 LGAYVISMASNASDVLAVELLQKDARLAVSGEL-----GRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHI 705 (1057)
Q Consensus 632 ~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~-----g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L 705 (1057)
-|.|.||...-.-.-=.|.-||||||+...+.+ |....+..|+|.|=|-++++|+.|-+++-.....-...+.+
T Consensus 344 ~GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~~ekll 422 (425)
T PF12897_consen 344 KGGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAAVEKLL 422 (425)
T ss_dssp SBSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999987766777788999999998643321 22112468999999999999999999887766665555544
No 26
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=48.07 E-value=38 Score=41.71 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=68.7
Q ss_pred hhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeE
Q 001539 634 AYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQ 713 (1057)
Q Consensus 634 ~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~Q 713 (1057)
-++|...+|+.||..+--+...+.-. .|.+ ...+.++||.||+..+.|..+|+..+= ...-
T Consensus 187 yi~LPKves~~Ev~~~~~~~~~~E~~----~gl~--~gtiki~vlIET~~a~~~~~eIa~alr-------------~rv~ 247 (511)
T cd00480 187 YFYLPKMESPLEARLWNDVFSRAEDY----LGLP--RGTIKATVLIETLPAAFEMDEILYELR-------------DHSA 247 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHh----cCCC--CCCeeEEEEECCHHHHHHHHHHHHhcc-------------Ccce
Confidence 46889999999998876554332211 1221 246899999999999999999997641 2234
Q ss_pred EEEeecccCCcchhhhh--------hhH-------H-HHHHHHHHHHHHHHcCCeE
Q 001539 714 EVMVGYSDSGKDAGRFT--------AAW-------E-LYKAQEDVVAACNEFGIKV 753 (1057)
Q Consensus 714 eVMlGYSDS~KDgG~la--------A~W-------~-LyrAQ~~L~~va~~~gV~l 753 (1057)
-+.+|.-|=..|-|... ..+ . ++-.+..++..|+++|+..
T Consensus 248 gLn~G~~Dy~~sli~~~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~A 303 (511)
T cd00480 248 GLNCGRWDYIFSEIKTFRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHA 303 (511)
T ss_pred eeecChHHHHHHhccccccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCc
Confidence 47777777666554322 122 2 5556778999999999875
No 27
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=45.74 E-value=36 Score=34.68 Aligned_cols=41 Identities=34% Similarity=0.732 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001539 230 WKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDS 301 (1057)
Q Consensus 230 ~~avP~l~~~l~~al~~~~g~~~p~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~ 301 (1057)
|-.|=.|.-+|..++.++ ||+.++|||.. .+++.|++++++
T Consensus 91 wGSlDalIGrLraafee~------------------Gg~pe~NPf~~-------------~~vr~yLr~vr~ 131 (132)
T PF04852_consen 91 WGSLDALIGRLRAAFEEH------------------GGHPEANPFAA-------------RAVRLYLREVRD 131 (132)
T ss_pred hccHHHHHHHHHHHHHHh------------------CCCCCCCchhh-------------HHHHHHHHHHhc
Confidence 344446677777777766 45567999943 456778888764
No 28
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=45.71 E-value=39 Score=38.61 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=74.2
Q ss_pred cchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCc-cccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcC
Q 001539 632 LGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLR-VVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHN 710 (1057)
Q Consensus 632 ~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~-VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~ 710 (1057)
+...+.-.+++++||..+-.+..+..- .+++. +..++||...+.|+..|... .
T Consensus 81 ~d~v~LPK~e~~~~v~~~~~~l~~~~~-----------~~~~~~l~a~iETa~gv~~~~eIA~a---------------~ 134 (283)
T COG2301 81 VDGVVLPKVESAADVEELDQLLREAEA-----------AAGREILIALIETARGVLNAEEIAAA---------------S 134 (283)
T ss_pred CCEEEccCcCchHHHHHHHHHhhhhhc-----------cccchhhHHhhhcHHHHhCHHHHhcC---------------c
Confidence 778899999999999998877663221 12333 89999999999999999875 3
Q ss_pred Ce-EEEEeecccCCcchhhhhhh---HHHHHHHHHHHHHHHHcCCeE
Q 001539 711 GH-QEVMVGYSDSGKDAGRFTAA---WELYKAQEDVVAACNEFGIKV 753 (1057)
Q Consensus 711 ~~-QeVMlGYSDS~KDgG~laA~---W~LyrAQ~~L~~va~~~gV~l 753 (1057)
++ ..+++|=.|=.+|-|--.+. =.++-+...++..|+-+|+..
T Consensus 135 ~~l~~l~~Ga~Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a 181 (283)
T COG2301 135 GRLVGLAFGANDLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAA 181 (283)
T ss_pred cceeeeEecHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCc
Confidence 34 77888888876666654443 277888889999999999877
No 29
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=45.69 E-value=1e+02 Score=37.19 Aligned_cols=133 Identities=18% Similarity=0.151 Sum_probs=73.6
Q ss_pred HHHHHHHhcccee--EeeecCC-------CccchhhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHcccCc
Q 001539 136 DELYDTVCKQEVE--IVLTAHP-------TQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDE 206 (1057)
Q Consensus 136 ~~i~~~L~~~~v~--pVlTAHP-------TE~~RrTvl~~~~rI~~lL~~~d~~~~~~~e~~~~~~~l~~~I~~LW~T~e 206 (1057)
...++.|.+..-. .+| -+| ++..+.-+.+-++++...|++.-...++.+...+.++.-.+....+.+--+
T Consensus 125 ~k~~e~la~~~~vP~~~i-d~P~~~~~~~~~~~~~Y~~~ql~~l~~~LEe~tG~kit~e~L~eaI~n~nr~~~~~~e~~~ 203 (430)
T TIGR03191 125 AKWYQHVAKEEKIPDFYL-DVGVGAYKDLTDARLDYVANQLHDGIEFVEKASGRKCDDELFIKAIKNEMRSTARWADICA 203 (430)
T ss_pred HHHHHHHHHhcCCCeEEE-ECCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556544322 233 666 345555666667788888888777778777655555533333333335688
Q ss_pred cccCCCChHHHHHHHHHHHHHhHHhH---HHHHHHHHHHHHHHhc--CCC-CCCCCCCccccccccCCCCCCCC
Q 001539 207 LRRHKPTPVDEARAGLNIVEQSLWKA---VPHYLRRVSNALKKHT--GKP-LPLTCAPIRFGSWMGGDRDGNPN 274 (1057)
Q Consensus 207 iR~~kPtv~DE~~~gL~y~~~sl~~a---vP~l~~~l~~al~~~~--g~~-~p~~~~~i~fgSWiGGDRDGNP~ 274 (1057)
+|..+|+|.+-......|.-..+... ...+++.|-+.|++.. |.. .|. ..+ |+ |++|-- |-|+
T Consensus 204 l~~~~P~Pisg~dl~~~~~~~~~~~~~~~~~~~~~~L~~el~~r~~~G~~~~~~-e~~-Ri--l~~g~p-~~~~ 272 (430)
T TIGR03191 204 LNKAKPAPLDEKTMYSLYVLAILHKSSQWCADFMDELYEEVKDRVARGIAAVPN-ERC-RL--MSDTQP-PWPF 272 (430)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHcCCCcCCC-CCc-eE--EEeCCC-CCch
Confidence 99999999984433333333333333 3455555555555443 322 222 222 65 888865 4443
No 30
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=44.42 E-value=28 Score=38.56 Aligned_cols=123 Identities=24% Similarity=0.239 Sum_probs=87.4
Q ss_pred ccCCCCHHHHhcH-HHHHHHHhccHHHHHHHhhhcCCeEEEE----eecccCCcchhhhhhhHHHHHHHHHHHHHHHHcC
Q 001539 676 VPLFETVTDLRGA-GLVIRKLLSIDWYRKHIIKNHNGHQEVM----VGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFG 750 (1057)
Q Consensus 676 vPLFETi~DL~~a-~~Im~~Ll~~p~Yr~~L~~~~~~~QeVM----lGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~g 750 (1057)
--.|||+.|+++- ..|.+.|++++...+|++. +-|| +||-|-|+=--++.+|=+| +|.++..+.|
T Consensus 11 ~l~~e~~~~se~~p~~vy~~l~~D~ev~A~l~m-----aNv~av~RlgYNDHG~vHa~Iva~~Al-----~i~~lL~~~G 80 (269)
T COG3294 11 DLIEETLADSEAFPKDVYELLLNDEEVQAYLKM-----ANVMAVGRLGYNDHGPVHARIVANSAL-----AIYKLLLEKG 80 (269)
T ss_pred ccccccchhhhhchHHHHHHHhcCHHHHHHHHH-----hhhhhhhhhcccCCCceeeeeccchHH-----HHHHHHHhcC
Confidence 3368999999999 5699999999999999966 3344 8999999988888887665 6777788899
Q ss_pred CeEEEe--------------------cCCCCCCCCCCChhhhhhhcCCCCCcccccccccccchhhhhcCCHHHHHHHHH
Q 001539 751 IKVTLF--------------------HGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLE 810 (1057)
Q Consensus 751 V~l~~F--------------------HGRGGSvGRGGGPt~~AIlaqP~gsv~g~iRvTEQGEvI~~kyg~~~lA~rnLE 810 (1057)
|+..+. |-=|-||-|--++.|-+.++.+ | --..++--|+++.-+.+-=.
T Consensus 81 v~ps~v~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~~-------I----ldrIL~kiy~~~~k~~~~rs 149 (269)
T COG3294 81 VKPSGVTDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLALD-------I----LDRILSKIYPDPEKAVRVRS 149 (269)
T ss_pred CCcccccccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhHH-------H----HHHHhhhhcCCHHHHHhHHH
Confidence 988653 5555666777777777766655 1 11233555666666655555
Q ss_pred HHHHHHHHh
Q 001539 811 IYTTAVLLA 819 (1057)
Q Consensus 811 ~~~aa~l~a 819 (1057)
-++.|++-+
T Consensus 150 evlhAI~ch 158 (269)
T COG3294 150 EVLHAIYCH 158 (269)
T ss_pred HHHHHhhcc
Confidence 555555543
No 31
>PRK06739 pyruvate kinase; Validated
Probab=42.25 E-value=2.1e+02 Score=33.86 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=77.7
Q ss_pred HHHHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHH
Q 001539 621 FRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDW 700 (1057)
Q Consensus 621 f~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~ 700 (1057)
++...+.|-+.+. +|..++++||..+--+.++.|. ..+.|+.=.||.+.++|-++|++.-
T Consensus 171 i~f~~~~~vD~ia---~SFVr~~~Dv~~~r~~l~~~g~------------~~~~IiaKIE~~~av~nl~eI~~~s----- 230 (352)
T PRK06739 171 IQFLLEEDVDFIA---CSFVRKPSHIKEIRDFIQQYKE------------TSPNLIAKIETMEAIENFQDICKEA----- 230 (352)
T ss_pred HHHHHHcCCCEEE---ECCCCCHHHHHHHHHHHHHcCC------------CCCcEEEEECCHHHHHHHHHHHHhc-----
Confidence 4445566666444 5999999999999988875431 2567899999999999999999871
Q ss_pred HHHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEe
Q 001539 701 YRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLF 756 (1057)
Q Consensus 701 Yr~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~F 756 (1057)
. -||+.=-|= |.=..-+.+-.+|+++.+.|+++|..+.+=
T Consensus 231 ---------D---gimVARGDL----gve~~~e~vp~~Qk~Ii~~c~~~gkPvIvA 270 (352)
T PRK06739 231 ---------D---GIMIARGDL----GVELPYQFIPLLQKMMIQECNRTNTYVITA 270 (352)
T ss_pred ---------C---EEEEECccc----ccccCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 2 489876554 444566899999999999999999988753
No 32
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=39.58 E-value=59 Score=40.10 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=70.6
Q ss_pred HHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHH
Q 001539 624 AAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRK 703 (1057)
Q Consensus 624 i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~ 703 (1057)
+.+.| ..+ -++|..++|+.|+-.+--+..++.-. .|.+ ...+.+.+|.||+..+-|..+|+..+ +.
T Consensus 179 l~~~g-~gp-yi~LPKves~~Ev~~~~~vf~~~E~~----lGlp--~GtIki~vLIET~~A~~nm~EIa~al------r~ 244 (511)
T cd00727 179 LLARG-SGP-YFYLPKMESHLEARLWNDVFVFAQDY----LGLP--RGTIKATVLIETLPAAFEMDEILYEL------RD 244 (511)
T ss_pred HHhcC-CCc-EEecCCCCCHHHHHHHHHHHHHHHHH----cCCC--CCceEEEEEecCHHHHHHHHHHHHhc------cC
Confidence 33445 245 77899999999998776555433211 1221 24689999999999999999999775 12
Q ss_pred HHhhhcCCeEEEEeecccCCcchhhhh---------------hhHHHHHH-HHHHHHHHHHcCCe
Q 001539 704 HIIKNHNGHQEVMVGYSDSGKDAGRFT---------------AAWELYKA-QEDVVAACNEFGIK 752 (1057)
Q Consensus 704 ~L~~~~~~~QeVMlGYSDS~KDgG~la---------------A~W~LyrA-Q~~L~~va~~~gV~ 752 (1057)
+ ..-+++|.-|=.++-|.-. -+=.+..| +..++..|+++|+.
T Consensus 245 R-------l~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~ 302 (511)
T cd00727 245 H-------SAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAH 302 (511)
T ss_pred c-------eEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 2 3457777766555442221 11145566 66699999999974
No 33
>PRK09255 malate synthase; Validated
Probab=39.48 E-value=59 Score=40.24 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=70.1
Q ss_pred HhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHH
Q 001539 626 ELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHI 705 (1057)
Q Consensus 626 ~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L 705 (1057)
+.|.. + .++|...+|+.|+-.+--+..++.-. .|.+ ...+.+.+|.||+..+-|..+|+..+ +.+
T Consensus 202 ~~g~g-p-~i~LPKves~~Ev~~~~~vf~~~E~~----lGlp--~GtIki~vLIET~~A~~nm~EIa~a~------r~R- 266 (531)
T PRK09255 202 AKGSG-P-YFYLPKLESHLEARLWNDVFVFAEDR----LGLP--RGTIKATVLIETLPAAFEMDEILYEL------REH- 266 (531)
T ss_pred hCCCC-c-EEeccCCCCHHHHHHHHHHHHHHHHh----cCCC--CCceEEEEEecCHHHHHHHHHHHHhc------cCc-
Confidence 34444 5 88999999999998776655433211 1221 24789999999999999999999775 223
Q ss_pred hhhcCCeEEEEeecccCCcchh--------hh-------hhhHHHHHH-HHHHHHHHHHcCCe
Q 001539 706 IKNHNGHQEVMVGYSDSGKDAG--------RF-------TAAWELYKA-QEDVVAACNEFGIK 752 (1057)
Q Consensus 706 ~~~~~~~QeVMlGYSDS~KDgG--------~l-------aA~W~LyrA-Q~~L~~va~~~gV~ 752 (1057)
..-+++|.-|=..+-+ ++ +-+=.+..| +..++..|+++|+.
T Consensus 267 ------l~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~ 323 (531)
T PRK09255 267 ------IAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAH 323 (531)
T ss_pred ------eEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 3457888777664322 11 111145556 66777999999963
No 34
>PRK14725 pyruvate kinase; Provisional
Probab=37.09 E-value=1.6e+02 Score=37.20 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=81.6
Q ss_pred hhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeEE
Q 001539 635 YVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQE 714 (1057)
Q Consensus 635 yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~Qe 714 (1057)
+-+|..+++.||..+--+.++.|. ..+.|+.=.||.+.++|-++|+..-..+ ..--
T Consensus 448 ValSFVrs~~DV~~lr~~L~~~g~------------~~~~IiaKIEt~~av~nL~eIl~~am~~------------~~DG 503 (608)
T PRK14725 448 VALSFVRSPEDVRLLLDALEKLGA------------DDLGVVLKIETRRAFENLPRILLEAMRH------------PRFG 503 (608)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCC------------CCCcEEEEECCHHHHHHHHHHHHhhccC------------CCcE
Confidence 446999999999999988875431 2577899999999999999999873221 2345
Q ss_pred EEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChh
Q 001539 715 VMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPT 770 (1057)
Q Consensus 715 VMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt 770 (1057)
|||.==|=+=..| -..+...|++|...|+++|+.++.===-=.|+-..+=||
T Consensus 504 IMIARGDLgvEi~----~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PT 555 (608)
T PRK14725 504 VMIARGDLAVEVG----FERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPS 555 (608)
T ss_pred EEEECCccccccC----HHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCC
Confidence 8887666555544 478999999999999999999887544445555666665
No 35
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=35.19 E-value=11 Score=32.63 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=34.5
Q ss_pred HHHHHHHcCccccccccccchhHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001539 542 LIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLE 591 (1057)
Q Consensus 542 lir~v~~FGfhla~LDIRQnS~~H~~al~ei~~~~g~~~Y~~l~E~~r~~ 591 (1057)
||--.++||+.+-.+||-.-|- +..+++.+.-.+|++|||++-++
T Consensus 15 li~im~sf~~a~~~~~i~i~s~-----~~~l~~~l~k~~ys~ld~ee~me 59 (62)
T PF12133_consen 15 LIIIMRSFRIAIWNIQIIISSI-----VRQLFNPLDKKNYSELDDEEPME 59 (62)
T ss_pred HHHHHHHHHHHHHhHHhHHHHH-----HHHHhcccccccccccCcccccc
Confidence 5667889999999999866554 56667666667899999987543
No 36
>PLN02461 Probable pyruvate kinase
Probab=34.82 E-value=1.5e+02 Score=36.68 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=71.6
Q ss_pred hhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeE
Q 001539 634 AYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQ 713 (1057)
Q Consensus 634 ~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~Q 713 (1057)
-+-+|..++++||.++--+..+.| ..+.|+.=.||.++++|-++|++. . .
T Consensus 210 ~ia~SFVr~a~DV~~~r~~l~~~~-------------~~~~IiAKIE~~~av~nl~eIi~~------------s--D--- 259 (511)
T PLN02461 210 FIALSFVRKGSDLVEVRKVLGEHA-------------KSILLISKVENQEGLDNFDDILAE------------S--D--- 259 (511)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCC-------------CCCCEEEEECCHHHHHHHHHHHHh------------c--C---
Confidence 345799999999999988886322 256788899999999999999987 2 2
Q ss_pred EEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEE
Q 001539 714 EVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTL 755 (1057)
Q Consensus 714 eVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~ 755 (1057)
-||+.--|=+=.-| -..+..+|+++.+.|+++|..+..
T Consensus 260 gIMVARGDLGvEip----~e~vp~~Qk~II~~c~~~gkPVIv 297 (511)
T PLN02461 260 AFMVARGDLGMEIP----IEKIFLAQKMMIYKCNLAGKPVVT 297 (511)
T ss_pred EEEEeccccccccC----HHHhHHHHHHHHHHHHHcCCCeEE
Confidence 49998877665554 567899999999999999988765
No 37
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=34.81 E-value=74 Score=37.21 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=72.6
Q ss_pred HHHHHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHH
Q 001539 622 RVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWY 701 (1057)
Q Consensus 622 ~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Y 701 (1057)
+...+.|.+ -+-+|..++++||.++--+.++.| ..+.|+.=.||.+.++|-++|++.
T Consensus 183 ~fa~~~~vD---~IalSFVrsa~dV~~lr~~l~~~~-------------~~~~iiaKIE~~~~v~nl~eI~~~------- 239 (348)
T PF00224_consen 183 KFAVENGVD---FIALSFVRSAEDVKELRKILGEKG-------------KDIKIIAKIETKEAVENLDEILEA------- 239 (348)
T ss_dssp HHHHHTT-S---EEEETTE-SHHHHHHHHHHHTCTT-------------TTSEEEEEE-SHHHHHTHHHHHHH-------
T ss_pred HHHHHcCCC---EEEecCCCchHHHHHHHHHhhhcC-------------cccceeeccccHHHHhhHHHHhhh-------
Confidence 334445544 456799999999999988876432 257889999999999999999986
Q ss_pred HHHHhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEe
Q 001539 702 RKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLF 756 (1057)
Q Consensus 702 r~~L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~F 756 (1057)
. . -||+.=-| -|.=..-..+..+|+.+...|+++|..+.+=
T Consensus 240 -----s--D---gimiaRGD----Lg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~A 280 (348)
T PF00224_consen 240 -----S--D---GIMIARGD----LGVEIPFEKVPIIQKRIIKKCNAAGKPVIVA 280 (348)
T ss_dssp -----S--S---EEEEEHHH----HHHHSTGGGHHHHHHHHHHHHHHHT-EEEEE
T ss_pred -----c--C---eEEEecCC----cceeeeHHHHHHHHHHHHHHHHHhCCCeeeh
Confidence 2 2 48886544 5555566789999999999999999988763
No 38
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=33.52 E-value=38 Score=26.96 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=16.0
Q ss_pred HHHHHHHhccHHHHHHH
Q 001539 689 GLVIRKLLSIDWYRKHI 705 (1057)
Q Consensus 689 ~~Im~~Ll~~p~Yr~~L 705 (1057)
.+||+..-.+|.||+||
T Consensus 7 gqimk~yaadpeyrkh~ 23 (38)
T PF02526_consen 7 GQIMKAYAADPEYRKHL 23 (38)
T ss_pred hHHHHHHhcCHHHHHHH
Confidence 57999999999999999
No 39
>PTZ00066 pyruvate kinase; Provisional
Probab=32.76 E-value=1.4e+02 Score=36.91 Aligned_cols=94 Identities=21% Similarity=0.365 Sum_probs=74.2
Q ss_pred HHhCccccchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHH
Q 001539 625 AELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKH 704 (1057)
Q Consensus 625 ~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~ 704 (1057)
.+.|-+. +-+|..+++.||.++--+.++.| ..+.|+.=.||.+.++|-.+|++.
T Consensus 220 ~~~~vD~---IalSFVr~a~DI~~~r~~l~~~g-------------~~~~IiAKIE~~~av~NldeIl~~---------- 273 (513)
T PTZ00066 220 IPMGCDF---IALSFVQSADDVRLCRQLLGERG-------------RHIKIIPKIENIEGLINFDEILAE---------- 273 (513)
T ss_pred HhcCCCE---EEECCCCCHHHHHHHHHHHHhCC-------------CCceEEEEECCHHHHHHHHHHHHh----------
Confidence 3455553 45799999999999998887433 246788999999999999999987
Q ss_pred HhhhcCCeEEEEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEE
Q 001539 705 IIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTL 755 (1057)
Q Consensus 705 L~~~~~~~QeVMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~ 755 (1057)
. . -||+.--|=+=. ..-..+..+|+++.+.|+++|..+..
T Consensus 274 --s--D---GIMVARGDLGvE----ip~e~vp~~QK~II~~c~~~gkPVIv 313 (513)
T PTZ00066 274 --S--D---GIMVARGDLGME----IPPEKVFLAQKMMISKCNVAGKPVIT 313 (513)
T ss_pred --c--C---EEEEEccccccc----cChHHcchHHHHHHHHHHHhCCCEEE
Confidence 2 3 399987765544 45678899999999999999988765
No 40
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=29.54 E-value=1.2e+02 Score=29.64 Aligned_cols=54 Identities=19% Similarity=0.120 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHHHHHHhCC
Q 001539 940 QSTIDLIEMVLGKADTHIAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGH 994 (1057)
Q Consensus 940 rt~ldnvemaLaKaDl~Ia~~Y~~Ll~d~~-~~~i~~~i~~E~~~T~~~vl~itg~ 994 (1057)
+.+.+.+.-.+...+-.|...|..++.||. .+.+...|+++. .+..+|..+..+
T Consensus 52 ~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~~~~-~Ae~Av~~~~~~ 106 (123)
T PF05524_consen 52 EQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIREGK-NAEYAVQEVIEE 106 (123)
T ss_dssp HHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 444444555566777799999999999999 889999999999 887777777643
No 41
>PLN02765 pyruvate kinase
Probab=28.31 E-value=2.2e+02 Score=35.54 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=70.4
Q ss_pred hhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeEE
Q 001539 635 YVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQE 714 (1057)
Q Consensus 635 yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~Qe 714 (1057)
.-+|..++++||.++--+.++.|. ..+.|+.=.||.+.++|-++|++.- . -
T Consensus 224 ia~SFVr~a~DI~~~r~~l~~~g~------------~~~~IiaKIE~~~av~nl~eIi~~s--------------D---g 274 (526)
T PLN02765 224 LSLSYTRHAEDVREAREFLSSLGL------------SQTQIFAKIENVEGLTHFDEILQEA--------------D---G 274 (526)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCC------------CCCcEEEEECCHHHHHHHHHHHHhc--------------C---E
Confidence 346999999999999999875442 2467889999999999999999872 2 4
Q ss_pred EEeecccCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEE
Q 001539 715 VMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVT 754 (1057)
Q Consensus 715 VMlGYSDS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~ 754 (1057)
||+.=-|= |.=..-..+-.+|+++.+.|+++|..+.
T Consensus 275 IMVARGDL----GvEip~e~vp~~QK~iI~~c~~~gKPVI 310 (526)
T PLN02765 275 IILSRGNL----GIDLPPEKVFLFQKAALYKCNMAGKPAV 310 (526)
T ss_pred EEEecCcc----ccccCHHHhHHHHHHHHHHHHHhCCCeE
Confidence 89876554 4455668899999999999999998765
No 42
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=28.08 E-value=84 Score=38.78 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=67.5
Q ss_pred hhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeE
Q 001539 634 AYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQ 713 (1057)
Q Consensus 634 ~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~Q 713 (1057)
.++|...+|+.|+-.+--+..++.=. .|.+ ...+.+.+|.||+-.+-|..+|+..+ +.+ ..
T Consensus 188 ~i~LPKves~~Ev~~~~~vf~~aE~~----lglp--~gtIk~~vlIET~~A~~nm~EIa~al------r~R-------l~ 248 (511)
T TIGR01344 188 YFYLPKLESHQEARLWNDVFHFAQDF----LGLP--RGTIKATVLIETLPAAFEMDEILYEL------REH-------IS 248 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHh----cCCC--CCceeEEEEecCHHHHHhHHHHHHhc------cCc-------ee
Confidence 77899999999998766555432210 0221 24688999999999999999999775 223 35
Q ss_pred EEEeecccCC----cchhh----hhhh-H------HHHHH-HHHHHHHHHHcCCe
Q 001539 714 EVMVGYSDSG----KDAGR----FTAA-W------ELYKA-QEDVVAACNEFGIK 752 (1057)
Q Consensus 714 eVMlGYSDS~----KDgG~----laA~-W------~LyrA-Q~~L~~va~~~gV~ 752 (1057)
-+.+|.-|=. |+-+. .... . .+..| +..++..|+++|+.
T Consensus 249 gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~ 303 (511)
T TIGR01344 249 GLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAH 303 (511)
T ss_pred EEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCC
Confidence 6788888877 33222 2111 1 45666 66677999999974
No 43
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=25.71 E-value=2.8e+02 Score=30.23 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=37.2
Q ss_pred CCCHhHHHHHHHHHHHHHhCccccchhhhcCCCChHhHHHHHHHHHHh
Q 001539 609 EVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDA 656 (1057)
Q Consensus 609 ~~s~~~~evl~tf~~i~~~g~~a~g~yIISmt~s~SDvL~Vl~Lakea 656 (1057)
..++...+++..++.+..+|.+.+. |+.|+++.+|++.++.+.+++
T Consensus 129 ~~tp~~~~l~~~~~~~~~~gaDivK--ia~~a~~~~D~~~ll~~~~~~ 174 (228)
T TIGR01093 129 QKTPSWEEIVERLEKALSYGADIVK--IAVMANSKEDVLTLLEITNKV 174 (228)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEE--EEeccCCHHHHHHHHHHHHHH
Confidence 3455566677888888889988665 889999999999999988754
No 44
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=24.93 E-value=69 Score=38.33 Aligned_cols=74 Identities=22% Similarity=0.391 Sum_probs=42.8
Q ss_pred CCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeEEEEee----cccCCcchhhhhhhHHHHHHHHHHHHHHH
Q 001539 672 TLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVG----YSDSGKDAGRFTAAWELYKAQEDVVAACN 747 (1057)
Q Consensus 672 ~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~QeVMlG----YSDS~KDgG~laA~W~LyrAQ~~L~~va~ 747 (1057)
||++|.--.+...|++. ...|+. .|.--||+= -=.+..+ -.=+|+-|+ +|.++++
T Consensus 5 PLd~v~~~~~~~~~~~~-------------L~~LK~--~GV~GVmvdvWWGiVE~~~p---~~ydWs~Y~---~l~~~vr 63 (402)
T PF01373_consen 5 PLDTVTDDNDWNALEAQ-------------LRALKS--AGVDGVMVDVWWGIVEGEGP---QQYDWSGYR---ELFEMVR 63 (402)
T ss_dssp -TTSSCTTSECHHHHHH-------------HHHHHH--TTEEEEEEEEEHHHHTGSST---TB---HHHH---HHHHHHH
T ss_pred eeeeecCCCcHHHHHHH-------------HHHHHH--cCCcEEEEEeEeeeeccCCC---CccCcHHHH---HHHHHHH
Confidence 57777655555533332 233444 678888873 2222211 234788886 6888999
Q ss_pred HcCCeEEE---ecCCCCCCCCC
Q 001539 748 EFGIKVTL---FHGRGGSIGRG 766 (1057)
Q Consensus 748 ~~gV~l~~---FHGRGGSvGRG 766 (1057)
+.|.|+.. ||+-||.||-=
T Consensus 64 ~~GLk~~~vmsfH~cGgNvgD~ 85 (402)
T PF01373_consen 64 DAGLKLQVVMSFHQCGGNVGDD 85 (402)
T ss_dssp HTT-EEEEEEE-S-BSSSTTSS
T ss_pred HcCCeEEEEEeeecCCCCCCCc
Confidence 99999877 99999999853
No 45
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=22.55 E-value=6.7e+02 Score=28.16 Aligned_cols=179 Identities=13% Similarity=0.141 Sum_probs=107.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhccCCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEee
Q 001539 72 QLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVL 151 (1057)
Q Consensus 72 ~l~~~l~~l~~~~~~~~arAfs~~f~L~NiAEe~~r~r~~r~~~~~~~sl~~~~~~L~~~g~s~~~i~~~L~~~~v~pVl 151 (1057)
++...+..=.-++|..+...|+--|--.+.......+...|. ...++.++.+.+.+..+++++-.....++.+-.==
T Consensus 11 ~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~ira---lT~t~~~a~~al~~~~~~~~e~~~~at~~RLavDA 87 (232)
T PF09577_consen 11 EALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRA---LTETIEEAKKALTSVSMSEEEKIRAATQFRLAVDA 87 (232)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 344555666778999999999999988888654333332232 24688889999999999998888777654432222
Q ss_pred ecCCCcc----chhhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHcccCccccCCCChHHHHHHHHHHHHH
Q 001539 152 TAHPTQI----NRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQ 227 (1057)
Q Consensus 152 TAHPTE~----~RrTvl~~~~rI~~lL~~~d~~~~~~~e~~~~~~~l~~~I~~LW~T~eiR~~kPtv~DE~~~gL~y~~~ 227 (1057)
=.||-|. +-++|++-..++-+-..+.|.. .-...-+++......+-=. -.=..+|.-++-+..-+.|+++
T Consensus 88 l~~~~qPLW~~~e~~i~~~~~~mk~a~~~~~~~-----~f~~~~n~f~~~y~~I~Ps-l~I~~~~~~v~~v~s~i~yl~~ 161 (232)
T PF09577_consen 88 LTHKHQPLWLQYEKPIMEDFQRMKQAAQKGDKE-----AFRASLNEFLSHYELIRPS-LTIDRPPEQVQRVDSHISYLER 161 (232)
T ss_pred hcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHhcch-hhccCCHHHHHHHHHHHHHHHH
Confidence 2377665 3456666666666666554321 1111222233333222111 1113466677888889999987
Q ss_pred hH-----HhHHHHHHHHHHHHHHHhcCCC--CCCCCCCc
Q 001539 228 SL-----WKAVPHYLRRVSNALKKHTGKP--LPLTCAPI 259 (1057)
Q Consensus 228 sl-----~~avP~l~~~l~~al~~~~g~~--~p~~~~~i 259 (1057)
-- ++.+-.-++.++..++..|+.. -+.+||++
T Consensus 162 ~~~~~~~~~~~~~~l~~le~~l~~lF~~~k~d~~dpsl~ 200 (232)
T PF09577_consen 162 LRFQQLDQKEVQEALEQLEEDLQKLFDGVKEDEADPSLI 200 (232)
T ss_pred hhhcccChHHHHHHHHHHHHHHHHHhCcccccccccchH
Confidence 43 3445555677778888888632 23345554
No 46
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=21.93 E-value=2.3e+02 Score=35.47 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=76.8
Q ss_pred cchhhhcCCCChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCC
Q 001539 632 LGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNG 711 (1057)
Q Consensus 632 ~g~yIISmt~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~ 711 (1057)
--+.++=|-+++.++.++.-++++++.-. .+.|... ...+.|.+..||+..+.+++.|++. +
T Consensus 384 ~~~Im~PmV~t~eE~~~~~~~~~~~~~~l-~~~~~~~-~~~~~vg~mIEtpaav~~~d~ia~~----------v------ 445 (565)
T TIGR01417 384 KLRIMFPMVATVEEIRAVKQELEEEKQEL-NDEGKAF-DENIEVGVMIEIPSAALIADHLAKE----------V------ 445 (565)
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHHHHH-HHhcccc-ccCcEEEEEEcCHHHHHhHHHHHhh----------C------
Confidence 35678999999999999999998765310 0112211 2467899999999999999998773 1
Q ss_pred eEEEEeecccCCc-----c-----hhh--hhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCC
Q 001539 712 HQEVMVGYSDSGK-----D-----AGR--FTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGS 762 (1057)
Q Consensus 712 ~QeVMlGYSDS~K-----D-----gG~--laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGS 762 (1057)
--|+||.-|=+- | -|+ =.-.=++.++-.++++.|+++|+.+.+.+.-.|+
T Consensus 446 -Df~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~ 507 (565)
T TIGR01417 446 -DFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGD 507 (565)
T ss_pred -CEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCC
Confidence 235555544333 1 121 1224478889999999999999999876655443
No 47
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=21.76 E-value=60 Score=28.45 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHh-ccceeEeeec
Q 001539 123 DIFSKLVQGGISPDELYDTVC-KQEVEIVLTA 153 (1057)
Q Consensus 123 ~~~~~L~~~g~s~~~i~~~L~-~~~v~pVlTA 153 (1057)
..+.+......|.+|+.+.|. +..|.|+||-
T Consensus 3 ~lIErCl~~yMsk~E~v~~L~~~a~I~P~~T~ 34 (54)
T PF09713_consen 3 NLIERCLQLYMSKEECVRALQKQANIEPVFTS 34 (54)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHcCCChHHHH
Confidence 457778888899999999996 4579999984
No 48
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.90 E-value=1.3e+02 Score=23.41 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhc
Q 001539 121 CDDIFSKLVQGGISPDELYDTVCK 144 (1057)
Q Consensus 121 l~~~~~~L~~~g~s~~~i~~~L~~ 144 (1057)
|-..+...++.|+|.++|.+.|..
T Consensus 5 W~~Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 5 WVELIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 556788889999999999999864
No 49
>PTZ00413 lipoate synthase; Provisional
Probab=20.71 E-value=1.1e+02 Score=36.49 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHh---CccccchhhhcCCCChHhHHHHHHHHHHhcc
Q 001539 613 DVKEVLDTFRVAAEL---GSDSLGAYVISMASNASDVLAVELLQKDARL 658 (1057)
Q Consensus 613 ~~~evl~tf~~i~~~---g~~a~g~yIISmt~s~SDvL~Vl~Lakeagl 658 (1057)
.-.+-|++++.+++. |-..+..+||.|-++-.|+++++.-+++.|+
T Consensus 276 tYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGV 324 (398)
T PTZ00413 276 SYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGV 324 (398)
T ss_pred CHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCC
Confidence 457788888888876 6667889999999999999999999999886
No 50
>PRK15278 type III secretion protein BopE; Provisional
Probab=20.30 E-value=1.1e+03 Score=25.64 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001539 233 VPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMN 309 (1057)
Q Consensus 233 vP~l~~~l~~al~~~~g~~~p~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~~~LS~s 309 (1057)
-|.+++++-++-+.. |.+ --.+=|-++-|----|||||+=..+---.+-...+.+--+++++...+.+||.
T Consensus 142 ~P~FLkEiGEAAqnA-GLP-----Ge~KngVFtPsGAGaNPFv~pL~l~~~~~~G~~L~~~~e~R~~~~~ARQ~aid 212 (261)
T PRK15278 142 RPAFIEALGDAARAT-GLP-----GADKQGVFTPSGAGTNPLYTEIRLRADTLMGAELAARPEYRELQPYARQQAID 212 (261)
T ss_pred CHHHHHHHHHHHHhC-CCC-----CcccCCeeCCCCCCCCCceeeeeehhHHHHhHHHhcChhhHHhhHHHHHHHHH
Confidence 355777777766655 322 12344433333345699999866554444445555566677888888877764
Done!