Query 001541
Match_columns 1057
No_of_seqs 587 out of 4425
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:01:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001541.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_840-843//hhsearch_pdb/001541hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 1.0 1 1 482.9 40.2 449 163-667 276-769 (816)
2 2r60_A Glycosyl transferase, g 1.0 1 1 386.3 35.3 443 164-672 6-464 (499)
3 3fro_A GLGA glycogen synthase; 1.0 1 1 368.1 34.6 428 164-671 1-434 (439)
4 3c48_A Predicted glycosyltrans 1.0 1 1 360.0 38.5 412 163-672 18-430 (438)
5 3vue_A GBSS-I, granule-bound s 1.0 1 1 350.3 31.3 457 160-670 4-514 (536)
6 1rzu_A Glycogen synthase 1; gl 1.0 1 1 331.1 30.8 444 166-671 1-479 (485)
7 2qzs_A Glycogen synthase; glyc 1.0 1 1 328.9 33.3 443 166-671 1-480 (485)
8 3okp_A GDP-mannose-dependent a 1.0 1 1 325.0 36.0 373 164-672 3-384 (394)
9 2iw1_A Lipopolysaccharide core 1.0 1 1 322.1 27.9 369 166-669 1-373 (374)
10 2jjm_A Glycosyl transferase, g 1.0 1 1 318.0 37.4 361 188-671 24-389 (394)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=482.91 Aligned_cols=449 Identities=27% Similarity=0.479 Sum_probs=357.0
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH--------HHHHHHCCCCEEEEE----EEECCCCCCCCCCCCC
Q ss_conf 9621999982134444578688999988827799999--------999982399903699----9833878998897569
Q 001541 163 GKKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVE--------LARALGSMPGVYRVD----LLTRQVSAPDVDWSYG 230 (1057)
Q Consensus 163 ~~~l~Illis~~~~~~~~~~~~g~~~d~GG~~~yv~~--------LA~aLa~~G~v~~V~----vit~~~~~~~~~~~y~ 230 (1057)
+|.|||+|||.||++++.++ +|+ ||||||+.||++ |+++|+++| |+|+ |+|+.+.++ ..++|+
T Consensus 276 ~~~~~i~~is~hg~~~~~~~-lG~-~dtGGq~vyV~e~~~al~~ela~~L~~~G--~~V~~~V~v~Tr~~~~~-~g~~y~ 350 (816)
T 3s28_A 276 PMVFNVVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEMLQRIKQQG--LNIKPRILILTRLLPDA-VGTTCG 350 (816)
T ss_dssp CCCCEEEEECCSSCCCSSSC-TTS-TTCSHHHHHHHHHHHHHHHHHHHHHHHTT--CCCCCEEEEEEECCTTC-TTSSTT
T ss_pred CCEEEEEEECCCCCCCCCCC-CCC-CCCCCCEEEHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCC-CCCCCC
T ss_conf 85248999847766575445-788-88898365099899899999999999779--96200168996898787-777657
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8632258999986344468889929998269996----545332357987367898899999998789886635999996
Q 001541 231 EPTEMLTPRNSDDFMDDMGESSGAYIIRIPFGPK----DKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVW 306 (1057)
Q Consensus 231 ~~~e~l~~~~~~~~~~~~~~~~gv~iirip~~~~----~~~l~k~~l~~~l~~f~~~~l~~~~~~~k~L~~~~~~~~~~~ 306 (1057)
.+.+.+ ...+|++|+|+|+++. .+|++++.+|+++..|...++..+... ...+
T Consensus 351 ~~~e~i------------~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~-----------~~~~ 407 (816)
T 3s28_A 351 ERLERV------------YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKE-----------LNGK 407 (816)
T ss_dssp SSEEEC------------TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHH-----------CSSC
T ss_pred CCCEEE------------CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----------CCCC
T ss_conf 751155------------48697599996687766543345657788999999999999999996-----------5899
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCH
Q ss_conf 50999859981489999980399979999258832047999995110267787787898989999987503799994697
Q 001541 307 PVAIHGHYADAGDSAALLSGALNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTR 386 (1057)
Q Consensus 307 pDIIh~h~~~~~~~a~~l~~~~~iP~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~yk~~~ri~~E~~~l~~ad~Vi~~S~ 386 (1057)
|||||+|+++++.++.++++.+++|+|+|.|+++..+.. .....+..+...|++.+++.+|+.+++.||.||++|.
T Consensus 408 PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~----~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~ 483 (816)
T 3s28_A 408 PDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYP----DSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTF 483 (816)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHST----TTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCH
T ss_conf 739996885389999999997599889998166300122----2330155677888898888899999984999998889
Q ss_pred HHHHHH------HHHHCCCC-HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999------95407998-47899999968203344588999699949998789867899999997788999999999
Q 001541 387 QEIEEQ------WRLYDGFD-PVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPD 459 (1057)
Q Consensus 387 ~~~~~~------~~~y~~~~-~~~~~~l~~~~~~gv~~~g~~~~kv~VIpnGiD~~~f~~~~~~~~~~~~~~~~~~~~~~ 459 (1057)
++++.+ +..+.++. |. ..+.+...+.+.+++.|||||+|.+.|.|...... ..
T Consensus 484 ~~~~~l~~~~~~y~~~~~~~~p~--------Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~------------Rl 543 (816)
T 3s28_A 484 QEIAGSKETVGQYESHTAFTLPG--------LYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKR------------RL 543 (816)
T ss_dssp HHHHCCSSSCCTTGGGSSEEETT--------TEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTT------------CC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCH--------HHHCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHH------------HH
T ss_conf 99999998887764420135411--------22101224467788799889747887286310355------------43
Q ss_pred CCHHHHHHH-------------HHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHH
Q ss_conf 822799876-------------4179998599998489997899999999976401359984999995089975100101
Q 001541 460 PPIWSEIMR-------------FFTNPRKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTS 526 (1057)
Q Consensus 460 ~~~~~~~~~-------------~~~~~~~~~Il~vGRl~~~Kgi~~Ll~A~~~l~~~~~~~~l~LIvG~~~~~~~~~~~~ 526 (1057)
......+.. +...+++++|+++||+++.||++.+++|+..+....+..++ +|+|++++......+.
T Consensus 544 ~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~L-vIvG~g~~~~~~~~e~ 622 (816)
T 3s28_A 544 TKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANL-VVVGGDRRKESKDNEE 622 (816)
T ss_dssp GGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEE-EEECCCTTSCCCCHHH
T ss_pred HHCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE-EEEECCCCCCCCCHHH
T ss_conf 200232000124605677774445789983999974472217999999999997855799699-9996887533343356
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCC----CCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCC
Q ss_conf 899999999998719999778399999----7829999997014993999729989987899999983996998388881
Q 001541 527 ASVLLSVLKLIDKYDLYGQVAYPKHHK----QSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGP 602 (1057)
Q Consensus 527 ~~~~~~i~~l~~~~~l~~~V~f~g~v~----~~ei~~ly~~Aa~~~dv~i~ps~~Egfgl~llEAmA~G~PVIat~~Gg~ 602 (1057)
..+...+.+++.++++.++|.|+|+++ .+++..+|+.++ |+||+||..|+||++++||||||+|||+|+.||+
T Consensus 623 ~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aa---DvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~ 699 (816)
T 3s28_A 623 KAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTK---GAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGP 699 (816)
T ss_dssp HHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTT---CEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTH
T ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHCC---EEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCH
T ss_conf 9999999999997499872898167556689999999999569---0999888755764999999980999999689876
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCC
Q ss_conf 01330398469919999999999999997----19999999999998994-4099899999999999803
Q 001541 603 VDIHRVLDNGLLVDPHDQQSVADALLKLV----ADKQLWARCRQNGLKNI-HLFSWPEHCKTYLSRIAGC 667 (1057)
Q Consensus 603 ~eii~~~~~Gllv~p~d~e~la~aI~~ll----~d~~~~~~~~~~a~~~v-~~fsw~~~a~~~l~~l~~~ 667 (1057)
.|++.++.+|++++|.|+++++++|.+++ .+++.++++++++++.+ ++|||+.++++|+++|...
T Consensus 700 ~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 700 AEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp HHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9997069818996899999999999999987526999999999999999998689999999999999997
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00 E-value=1 Score=386.29 Aligned_cols=443 Identities=31% Similarity=0.509 Sum_probs=319.9
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62199998213444457868899998882779999999998239990369998338789988975698632258999986
Q 001541 164 KKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDD 243 (1057)
Q Consensus 164 ~~l~Illis~~~~~~~~~~~~g~~~d~GG~~~yv~~LA~aLa~~G~v~~V~vit~~~~~~~~~~~y~~~~e~l~~~~~~~ 243 (1057)
++|||++|+.++++.++++.+...+..||+++++.+|+++|+++| |+|+|+|.....+.. ..|....+.
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~~-~~~~~~~~~-------- 74 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMG--VQVDIITRRIKDENW-PEFSGEIDY-------- 74 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTT--CEEEEEEECCCBTTB-GGGCCSEEE--------
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCC--CEEEEEECCCCCCCC-CCHHHHHHH--------
T ss_conf 452499996577744344234788887994334999999998559--848999578872336-511356775--------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 34446888992999826999654533235798736789889999999878988663599999650999859981489999
Q 001541 244 FMDDMGESSGAYIIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSAAL 323 (1057)
Q Consensus 244 ~~~~~~~~~gv~iirip~~~~~~~l~k~~l~~~l~~f~~~~l~~~~~~~k~L~~~~~~~~~~~pDIIh~h~~~~~~~a~~ 323 (1057)
.....|+.+++++..+. .+..+..+|.++..+...+.+.+.+. ..+|||||+|++.++..+..
T Consensus 75 ----~~~~~gv~v~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~------------~~~~Divh~~~~~~~~~~~~ 137 (499)
T 2r60_A 75 ----YQETNKVRIVRIPFGGD-KFLPKEELWPYLHEYVNKIINFYREE------------GKFPQVVTTHYGDGGLAGVL 137 (499)
T ss_dssp ----CTTCSSEEEEEECCSCS-SCCCGGGCGGGHHHHHHHHHHHHHHH------------TCCCSEEEEEHHHHHHHHHH
T ss_pred ----CCCCCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHC------------CCCCCEEEECCCCCHHHHHH
T ss_conf ----06789817998257776-77688999998999999999999853------------89988899757862079999
Q ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH--HCCC--
Q ss_conf 980399979999258832047999995110267787787898989999987503799994697899999954--0799--
Q 001541 324 LSGALNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRL--YDGF-- 399 (1057)
Q Consensus 324 l~~~~~iP~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~yk~~~ri~~E~~~l~~ad~Vi~~S~~~~~~~~~~--y~~~-- 399 (1057)
+++..++|+|+|.|+........+...+. ....+...+++..+...++.+++.+|.|+++|+...+.+... |+..
T Consensus 138 ~~~~~~~p~v~~~H~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~ 216 (499)
T 2r60_A 138 LKNIKGLPFTFTGHSLGAQKMEKLNVNTS-NFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVN 216 (499)
T ss_dssp HHHHHCCCEEEECSSCHHHHHHTTCCCST-TSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCC
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCC
T ss_conf 88735996899806840011134414787-76124556788899999999984689999888899999986412464223
Q ss_pred --CHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-----CC
Q ss_conf --84789999996820334458899969994999878986789999999778899999999982279987641-----79
Q 001541 400 --DPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFF-----TN 472 (1057)
Q Consensus 400 --~~~~~~~l~~~~~~gv~~~g~~~~kv~VIpnGiD~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 472 (1057)
.+ .++.|||||+|...|.+.... ......+.++. ..
T Consensus 217 ~~~~---------------------~ki~vi~ngvd~~~~~~~~~~----------------~~~~~~r~~~~~~~~~~~ 259 (499)
T 2r60_A 217 VEDD---------------------DKFSVIPPGVNTRVFDGEYGD----------------KIKAKITKYLERDLGSER 259 (499)
T ss_dssp TTCG---------------------GGEEECCCCBCTTTSSSCCCH----------------HHHHHHHHHHHHHSCGGG
T ss_pred CCCC---------------------CCEEEECCCCCHHHCCCCCHH----------------HHHHHHHHHHCCCCCCCC
T ss_conf 4678---------------------876998799586656864103----------------567899988364334568
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCC----CCCCHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99859999848999789999999997640135998499999508997----51001018999999999987199997783
Q 001541 473 PRKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGI----DEMSSTSASVLLSVLKLIDKYDLYGQVAY 548 (1057)
Q Consensus 473 ~~~~~Il~vGRl~~~Kgi~~Ll~A~~~l~~~~~~~~l~LIvG~~~~~----~~~~~~~~~~~~~i~~l~~~~~l~~~V~f 548 (1057)
+++++|+++||+.+.||++.+++|+..+....+.....+|+|+.+.. ..+.....+|...+.+++.++++.++|.|
T Consensus 260 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~ 339 (499)
T 2r60_A 260 MELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSM 339 (499)
T ss_dssp TTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEE
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88768999606850158899999999998738886599998788875322111132014799999999986499860998
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99999782999999701499399972998998789999998399699838888101330398469919999999999999
Q 001541 549 PKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALL 628 (1057)
Q Consensus 549 ~g~v~~~ei~~ly~~Aa~~~dv~i~ps~~Egfgl~llEAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~e~la~aI~ 628 (1057)
+|+++.+++..+|+.|..+.|++|+||..|+||++++||||||+|||+++.||..|++.++.+|++++|.|+++++++|.
T Consensus 340 ~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~ 419 (499)
T 2r60_A 340 FPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLL 419 (499)
T ss_dssp EECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 78899899999999557679889978645897968999997699889816887788734786079958999999999999
Q ss_pred HHHHCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 997199999999999989944-09989999999999980339999
Q 001541 629 KLVADKQLWARCRQNGLKNIH-LFSWPEHCKTYLSRIAGCKPRHP 672 (1057)
Q Consensus 629 ~ll~d~~~~~~~~~~a~~~v~-~fsw~~~a~~~l~~l~~~~~~~~ 672 (1057)
+++++++.+.++++++++.+. +|||+.++++|.++|+++.....
T Consensus 420 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~ 464 (499)
T 2r60_A 420 KAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKD 464 (499)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998699999999999999998757999999999999999873213
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=368.14 Aligned_cols=428 Identities=21% Similarity=0.261 Sum_probs=308.9
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62199998213444457868899998882779999999998239990369998338789988975698632258999986
Q 001541 164 KKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDD 243 (1057)
Q Consensus 164 ~~l~Illis~~~~~~~~~~~~g~~~d~GG~~~yv~~LA~aLa~~G~v~~V~vit~~~~~~~~~~~y~~~~e~l~~~~~~~ 243 (1057)
++|||++|+.+.. ++..||.++++.+|+++|+++| |+|+|+|+...... .........+. ....
T Consensus 1 r~MkIl~v~~~~~----------p~~~gG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~--~~~~~~~~~~~--~~~~ 64 (439)
T 3fro_A 1 RHMKVLLLGFEFL----------PVKVGGLAEALTAISEALASLG--HEVLVFTPSHGRFQ--GEEIGKIRVFG--EEVQ 64 (439)
T ss_dssp CCCEEEEECSCCT----------TSCSSSHHHHHHHHHHHHHHTT--CEEEEEEECTTCSC--CEEEEEEEETT--EEEE
T ss_pred CCEEEEEEECCCC----------CCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCH--HHHHCCCCCCC--CCCC
T ss_conf 9528999950217----------7666889999999999999779--85999836778823--65524630147--6531
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 34446888992999826999654533235798-73678988999999987898866359999965099985998148999
Q 001541 244 FMDDMGESSGAYIIRIPFGPKDKYIAKELLWP-HIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSAA 322 (1057)
Q Consensus 244 ~~~~~~~~~gv~iirip~~~~~~~l~k~~l~~-~l~~f~~~~l~~~~~~~k~L~~~~~~~~~~~pDIIh~h~~~~~~~a~ 322 (1057)
+.......+|+.+++++. + +..+..++. +...+...+..+...+.+.+...+.. ..+|||||+|++..+..+.
T Consensus 65 ~~~~~~~~~gv~v~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~ 138 (439)
T 3fro_A 65 VKVSYEERGNLRIYRIGG-G---LLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLRE--EPLPDVVHFHDWHTVFAGA 138 (439)
T ss_dssp EEEEEEEETTEEEEEEES-G---GGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTT--SCCCSEEEEESGGGHHHHH
T ss_pred EEEEECCCCCCEEEEECC-H---HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHHHHH
T ss_conf 024312578840899353-2---205212466776300232578999999999997444--7998199946403434589
Q ss_pred HHHHCCCCCEEEEECCCCHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCH
Q ss_conf 99803999799992588320479999-95110267787787898989999987503799994697899999954079984
Q 001541 323 LLSGALNVPMLFTGHSLGRDKLEQLL-KQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDP 401 (1057)
Q Consensus 323 ~l~~~~~iP~V~t~H~l~~~~~~~l~-~~g~~~~~~i~~~yk~~~ri~~E~~~l~~ad~Vi~~S~~~~~~~~~~y~~~~~ 401 (1057)
.+++..++|+|++.|+.......... ........ . ....+..++.+++.+|.++++|+...+..++.+..
T Consensus 139 ~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~--- 209 (439)
T 3fro_A 139 LIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSEL----A--PYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRN--- 209 (439)
T ss_dssp HHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGG----C--CSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGG---
T ss_pred HHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCCCC----C--CCCEEEHHHHHHHHCCEEEECCHHHHHHHHHHHHH---
T ss_conf 88652699789996534445685677474551003----5--66632076665543458872689899998605650---
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHCCCCCCEEEE
Q ss_conf 78999999682033445889996999499987898678999999977889999999998227-99876417999859999
Q 001541 402 VLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIW-SEIMRFFTNPRKPVILA 480 (1057)
Q Consensus 402 ~~~~~l~~~~~~gv~~~g~~~~kv~VIpnGiD~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Il~ 480 (1057)
+..++.+||||+|.+.|.|..... ...... ....++...++ ++|++
T Consensus 210 -------------------~~~~i~vi~ngvd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~~i~~ 256 (439)
T 3fro_A 210 -------------------FEGKITYVFNGIDCSFWNESYLTG-------------SRDERKKSLLSKFGMDEG-VTFMF 256 (439)
T ss_dssp -------------------GTTSEEECCCCCCTTTSCGGGSCS-------------CHHHHHHHHHHHHTCCSC-EEEEE
T ss_pred -------------------CCCCEEECCCCCCCHHCCCCCCCC-------------HHHHHHHHHHHHCCCCCC-CEEEE
T ss_conf -------------------477345347888804308432211-------------045669999997399998-47999
Q ss_pred EECCC-CCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHH
Q ss_conf 84899-97899999999976401359984999-99508997510010189999999999871999977839999978299
Q 001541 481 LARPD-PKKNITTLVKAFGECRPLRELANLTL-IMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVP 558 (1057)
Q Consensus 481 vGRl~-~~Kgi~~Ll~A~~~l~~~~~~~~l~L-IvG~~~~~~~~~~~~~~~~~~i~~l~~~~~l~~~V~f~g~v~~~ei~ 558 (1057)
+||+. +.||++.+++|+..+......+++.| |+|+++. .+...+.+++.+++ ..+.|.|+++.+++.
T Consensus 257 ~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~---------~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~ 325 (439)
T 3fro_A 257 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP---------ELEGWARSLEEKHG--NVKVITEMLSREFVR 325 (439)
T ss_dssp ECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH---------HHHHHHHHHHHHCT--TEEEECSCCCHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCH---------HHHHHHHHHHHHCC--CEEEECCCCCHHHHH
T ss_conf 7333534366999999999998546678718999807972---------67789999875069--899972879988999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHH-CHHHH
Q ss_conf 99997014993999729989987899999983996998388881013303984699199999999999999971-99999
Q 001541 559 EIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVA-DKQLW 637 (1057)
Q Consensus 559 ~ly~~Aa~~~dv~i~ps~~Egfgl~llEAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~e~la~aI~~ll~-d~~~~ 637 (1057)
.+|+.| |++|+||..|+||++++||||||+|||+++.||..|++.++ +|++++|.|+++++++|.++++ +++.+
T Consensus 326 ~~~~~a----dv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~ 400 (439)
T 3fro_A 326 ELYGSV----DFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALELSRSDL 400 (439)
T ss_dssp HHHTTC----SEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEECC-CEEEECCCCHHHHHHHHHHHHHCCHHHH
T ss_conf 999977----99995898788618999999779976973788743168758-4489688998999999999983199999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999899440998999999999998033999
Q 001541 638 ARCRQNGLKNIHLFSWPEHCKTYLSRIAGCKPRH 671 (1057)
Q Consensus 638 ~~~~~~a~~~v~~fsw~~~a~~~l~~l~~~~~~~ 671 (1057)
+++++++++.+++|||+.++++|+++|+++..+.
T Consensus 401 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 401 SKFRENCKKRAMSFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHTCSCCB
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998764729999999999999999754
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00 E-value=1 Score=360.04 Aligned_cols=412 Identities=24% Similarity=0.354 Sum_probs=303.0
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96219999821344445786889999888277999999999823999036999833878998897569863225899998
Q 001541 163 GKKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSD 242 (1057)
Q Consensus 163 ~~~l~Illis~~~~~~~~~~~~g~~~d~GG~~~yv~~LA~aLa~~G~v~~V~vit~~~~~~~~~~~y~~~~e~l~~~~~~ 242 (1057)
.+.|||++|+.+.. |...+.....||+++++.+|+++|.+.| |+|+|+|....... . ..+
T Consensus 18 ~~mmkIl~i~~~~~----p~~~~~~~~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~~~-----~-~~~-------- 77 (438)
T 3c48_A 18 GSHMRVAMISMHTS----PLQQPGTGDSGGMNVYILSTATELAKQG--IEVDIYTRATRPSQ-----G-EIV-------- 77 (438)
T ss_dssp -CCCEEEEECTTSC----TTCC-------CHHHHHHHHHHHHHHTT--CEEEEEEECCCGGG-----C-SEE--------
T ss_pred CCHHEEEEEEEECC----CCCCCCCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCC-----C-CCC--------
T ss_conf 00203345775325----6346787887879999999999999669--97999954788777-----5-400--------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 63444688899299982699965453323579873678988999999987898866359999965099985998148999
Q 001541 243 DFMDDMGESSGAYIIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSAA 322 (1057)
Q Consensus 243 ~~~~~~~~~~gv~iirip~~~~~~~l~k~~l~~~l~~f~~~~l~~~~~~~k~L~~~~~~~~~~~pDIIh~h~~~~~~~a~ 322 (1057)
...+++.+++++..+. ..+.+..++.++..|...++... +.. ..+||+||+|++..+..+.
T Consensus 78 ------~~~~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~------~~~~Div~~~~~~~~~~~~ 138 (438)
T 3c48_A 78 ------RVAENLRVINIAAGPY-EGLSKEELPTQLAAFTGGMLSFT------RRE------KVTYDLIHSHYWLSGQVGW 138 (438)
T ss_dssp ------EEETTEEEEEECCSCS-SSCCGGGGGGGHHHHHHHHHHHH------HHH------TCCCSEEEEEHHHHHHHHH
T ss_pred ------CCCCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHH------HHC------CCCCCEEEECCCCHHHHHH
T ss_conf ------2568748999247875-43236677899999999999999------841------6899989947755789999
Q ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCHH
Q ss_conf 99803999799992588320479999951102677877878989899999875037999946978999999540799847
Q 001541 323 LLSGALNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPV 402 (1057)
Q Consensus 323 ~l~~~~~iP~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~yk~~~ri~~E~~~l~~ad~Vi~~S~~~~~~~~~~y~~~~~~ 402 (1057)
.+++..++|+|++.|+........+.... . . . ...+...++..++.+|.|+++|+...+.+...++. .+
T Consensus 139 ~~~~~~~~p~v~~~h~~~~~~~~~~~~~~--~---~--~--~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~-~~- 207 (438)
T 3c48_A 139 LLRDLWRIPLIHTAHTLAAVKNSYRDDSD--T---P--E--SEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDA-DP- 207 (438)
T ss_dssp HHHHHHTCCEEEECSSCHHHHSCC----C--C---H--H--HHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCC-CG-
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCC--C---C--C--HHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCC-CH-
T ss_conf 99997499989994277401111100267--7---3--1--57899999999840899998479999999998589-82-
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 89999996820334458899969994999878986789999999778899999999982279987641799985999984
Q 001541 403 LERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALA 482 (1057)
Q Consensus 403 ~~~~l~~~~~~gv~~~g~~~~kv~VIpnGiD~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~vG 482 (1057)
.++.+||||+|...|.+.... .......++...+++++|+++|
T Consensus 208 --------------------~k~~vi~ngvd~~~~~~~~~~-----------------~~~~~r~~~~~~~~~~~i~~~G 250 (438)
T 3c48_A 208 --------------------DRISVVSPGADVELYSPGNDR-----------------ATERSRRELGIPLHTKVVAFVG 250 (438)
T ss_dssp --------------------GGEEECCCCCCTTTSCCC---------------------CHHHHHHTTCCSSSEEEEEES
T ss_pred --------------------HHEEEECCCCCCCCCCCCCCC-----------------HHHHHHHHCCCCCCCCEEEEEE
T ss_conf --------------------026882697661104786620-----------------2456688608998984899974
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 89997899999999976401359984999-99508997510010189999999999871999977839999978299999
Q 001541 483 RPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIY 561 (1057)
Q Consensus 483 Rl~~~Kgi~~Ll~A~~~l~~~~~~~~l~L-IvG~~~~~~~~~~~~~~~~~~i~~l~~~~~l~~~V~f~g~v~~~ei~~ly 561 (1057)
|+.+.||++.+++|+..+....+..++.| |+|+.... ..+...+.+++.++++.++|.|.|+++.+++..+|
T Consensus 251 ~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~-------g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~ 323 (438)
T 3c48_A 251 RLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGP-------NATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVY 323 (438)
T ss_dssp CBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC-------------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-------CCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH
T ss_conf 31566798999999999996397766699998188877-------72789999999971987868985889858899999
Q ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 97014993999729989987899999983996998388881013303984699199999999999999971999999999
Q 001541 562 RLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVADKQLWARCR 641 (1057)
Q Consensus 562 ~~Aa~~~dv~i~ps~~Egfgl~llEAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~e~la~aI~~ll~d~~~~~~~~ 641 (1057)
+.| |++|+||..|+||++++||||||+|||+++.|+..|++.++.+|+++++.|+++++++|.+++++++.+.+++
T Consensus 324 ~~a----dv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~ 399 (438)
T 3c48_A 324 RAA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMG 399 (438)
T ss_dssp HHC----SEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 858----9999874026875599999876998896279872577507972798799999999999999975989999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9998994409989999999999980339999
Q 001541 642 QNGLKNIHLFSWPEHCKTYLSRIAGCKPRHP 672 (1057)
Q Consensus 642 ~~a~~~v~~fsw~~~a~~~l~~l~~~~~~~~ 672 (1057)
+++++.+..|+|+.++++|+++|+++.....
T Consensus 400 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3c48_A 400 EDAVEHARTFSWAATAAQLSSLYNDAIANEN 430 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999998857999999999999999863136
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=350.33 Aligned_cols=457 Identities=16% Similarity=0.158 Sum_probs=281.0
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 1389621999982134444578688999988827799999999982399903699983387899889756986-322589
Q 001541 160 QQKGKKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEP-TEMLTP 238 (1057)
Q Consensus 160 ~~~~~~l~Illis~~~~~~~~~~~~g~~~d~GG~~~yv~~LA~aLa~~G~v~~V~vit~~~~~~~~~~~y~~~-~e~l~~ 238 (1057)
.++...|||++|+.... | -.-+||...++..|+++|+++| |+|+|+++.+. .+....... ...+.-
T Consensus 4 ~~~~~~MkIl~vs~E~~----P-----~~K~GGLadvv~~L~~aL~~~G--~~V~Vi~P~Y~--~~~~~~~~~~~~~~~~ 70 (536)
T 3vue_A 4 HHHHHHMNVVFVGAEMA----P-----WSKTGGLGDVLGGLPPAMAANG--HRVMVISPRYD--QYKDAWDTSVVAEIKV 70 (536)
T ss_dssp ----CCCEEEEECSCBT----T-----TBCSSHHHHHHHHHHHHHHTTT--CEEEEEEECCS--CCTTCEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEECC----C-----HHCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCH--HHHHHCCCCEEEEEEE
T ss_conf 66899738999987243----1-----2126769999999999999769--96999904850--2224226516899983
Q ss_pred CC-CCCCCCCCCCCCCEEEEECCCCCCCCCCCC------CCCCC--CHHHHHHHHHHHHH--HHHHHHHHHHC-------
Q ss_conf 99-986344468889929998269996545332------35798--73678988999999--98789886635-------
Q 001541 239 RN-SDDFMDDMGESSGAYIIRIPFGPKDKYIAK------ELLWP--HIPEFVDGALNHII--RMSNVLGEQIG------- 300 (1057)
Q Consensus 239 ~~-~~~~~~~~~~~~gv~iirip~~~~~~~l~k------~~l~~--~l~~f~~~~l~~~~--~~~k~L~~~~~------- 300 (1057)
.. ...........+|+.++.+.... +..+ ..+.. ....+.+...++.. +..-.+...+.
T Consensus 71 ~~~~~~~~~~~~~~~gv~~y~id~~~---~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~ 147 (536)
T 3vue_A 71 ADRYERVRFFHCYKRGVDRVFIDHPS---FLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYF 147 (536)
T ss_dssp TTEEEEEEEEECEETTEEEEEEECTT---TTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTC
T ss_pred CCCEEEEEEEEEEECCCEEEEECCHH---HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 68337899999997895599964755---412334667786668875676641799999999999999997302653011
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHC-------CCCCEEEEECCCCHHHH---HHHHHHHHCCHHHHHH----HH---H
Q ss_conf 999996509998599814899999803-------99979999258832047---9999951102677877----87---8
Q 001541 301 GGKPVWPVAIHGHYADAGDSAALLSGA-------LNVPMLFTGHSLGRDKL---EQLLKQARLSRDEINA----TY---K 363 (1057)
Q Consensus 301 ~~~~~~pDIIh~h~~~~~~~a~~l~~~-------~~iP~V~t~H~l~~~~~---~~l~~~g~~~~~~i~~----~y---k 363 (1057)
......+||+|+|+|.++.++.+++.. .++|+|+|+|++..... ..+...+......... .+ .
T Consensus 148 ~~~~~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (536)
T 3vue_A 148 KGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPV 227 (536)
T ss_dssp CSCCCSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTT
T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCHHHHHHCCCCCC
T ss_conf 01479987999776048999999998640233202563454215742245555333644189656401033331146410
Q ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 98989999987503799994697899999954079984789999996820334458899969994999878986789999
Q 001541 364 IMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGD 443 (1057)
Q Consensus 364 ~~~ri~~E~~~l~~ad~Vi~~S~~~~~~~~~~y~~~~~~~~~~l~~~~~~gv~~~g~~~~kv~VIpnGiD~~~f~~~~~~ 443 (1057)
....+..++..+..||.|+|+|+..+++....+.... +.. ......++.+||||||.+.|.|..+.
T Consensus 228 ~~~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~-------------~l~-~~~~~~~i~~I~NGiD~~~~~p~~d~ 293 (536)
T 3vue_A 228 EGRKINWMKAGILEADRVLTVSPYYAEELISGIARGC-------------ELD-NIMRLTGITGIVNGMDVSEWDPSKDK 293 (536)
T ss_dssp CEEEEEHHHHHHHHCSEEEESCHHHHHHHHTTCCCCS-------------SSC-CCSCCCSCEECCCCCCTTTSCTTTCS
T ss_pred CCCCHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCC-------------CCC-CCCCCCCEEEEECCCCHHHCCCCCCC
T ss_conf 0330439999998536778768788534312634452-------------200-12545781899799664214887762
Q ss_pred CCCCCCCCCCCCCCC---CCCHHHH-HHHHH--CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 999778899999999---9822799-87641--79998599998489997899999999976401359984999995089
Q 001541 444 MDGETEGNEDNPASP---DPPIWSE-IMRFF--TNPRKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRD 517 (1057)
Q Consensus 444 ~~~~~~~~~~~~~~~---~~~~~~~-~~~~~--~~~~~~~Il~vGRl~~~Kgi~~Ll~A~~~l~~~~~~~~l~LIvG~~~ 517 (1057)
. +.... ..... ....... ..+++ ..++.|+|+++||+.++||++.+++|+.++.+ +.+++ +++|.++
T Consensus 294 ~---~~~~~-~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l-~l~G~G~ 366 (536)
T 3vue_A 294 Y---ITAKY-DATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQI-VLLGTGK 366 (536)
T ss_dssp S---SSCCC-CTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEE-EEECCBC
T ss_pred C---CCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--HCCEE-EEEECCC
T ss_conf 1---00144-4345556567779999986199879997589999653023784789999997685--49859-9995467
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEC
Q ss_conf 97510010189999999999871999977839999978299999970149939997299899878999999839969983
Q 001541 518 GIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVAT 597 (1057)
Q Consensus 518 ~~~~~~~~~~~~~~~i~~l~~~~~l~~~V~f~g~v~~~ei~~ly~~Aa~~~dv~i~ps~~Egfgl~llEAmA~G~PVIat 597 (1057)
. .....+..+...+. .++.+.+..+.+++..+|+.| |+||+||..||||++++|||+||+|||++
T Consensus 367 ~---------~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~a----D~~v~PS~~E~fgl~~lEAma~G~PvI~s 431 (536)
T 3vue_A 367 K---------KFEKLLKSMEEKYP--GKVRAVVKFNAPLAHLIMAGA----DVLAVPSRFEPCGLIQLQGMRYGTPCACA 431 (536)
T ss_dssp H---------HHHHHHHHHHHHST--TTEEEECSCCHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHTTCCEEEC
T ss_pred C---------HHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHH----HEEECCCCCCCCCHHHHHHHHCCCCEEEC
T ss_conf 2---------68999999876168--854999714688899999862----34253465689888999999869989990
Q ss_pred CCCCCHHHHHCCCCEE----------EECCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8888101330398469----------9199999999999999971--999999999999899440998999999999998
Q 001541 598 KNGGPVDIHRVLDNGL----------LVDPHDQQSVADALLKLVA--DKQLWARCRQNGLKNIHLFSWPEHCKTYLSRIA 665 (1057)
Q Consensus 598 ~~Gg~~eii~~~~~Gl----------lv~p~d~e~la~aI~~ll~--d~~~~~~~~~~a~~~v~~fsw~~~a~~~l~~l~ 665 (1057)
+.||+.|+|.++.+|+ +|+|.|+++|+++|.+++. +.+.|+++.+++++ +.|||+..+++|+++|.
T Consensus 432 ~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~~~~~~~~am~--~~fSW~~~A~~y~~ly~ 509 (536)
T 3vue_A 432 STGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMN--QDLSWKGPAKNWENVLL 509 (536)
T ss_dssp SCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH--SCCSSHHHHHHHHHHHH
T ss_pred CCCCCHHEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_conf 7998222022798763246677751587999999999999999985295999999999877--35999999999999999
Q ss_pred CCCCC
Q ss_conf 03399
Q 001541 666 GCKPR 670 (1057)
Q Consensus 666 ~~~~~ 670 (1057)
++...
T Consensus 510 ~L~~~ 514 (536)
T 3vue_A 510 GLGVA 514 (536)
T ss_dssp TTCC-
T ss_pred HHHHC
T ss_conf 86044
No 6
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=331.08 Aligned_cols=444 Identities=16% Similarity=0.140 Sum_probs=279.7
Q ss_pred EEEEEEECCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCC--CCCCCCCCC
Q ss_conf 19999821344445786889999--88827799999999982399903699983387899889756986--322589999
Q 001541 166 LYIVLISIHGLIRGENMELGRDS--DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEP--TEMLTPRNS 241 (1057)
Q Consensus 166 l~Illis~~~~~~~~~~~~g~~~--d~GG~~~yv~~LA~aLa~~G~v~~V~vit~~~~~~~~~~~y~~~--~e~l~~~~~ 241 (1057)
|||++|+.+.. | ..||+++++.+|+++|+++| |+|+|+|..... ....+... ...+.....
T Consensus 1 MkIl~v~~~~~-----------P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~~~~--~~~~~~~~~~~~~~~~~~~ 65 (485)
T 1rzu_A 1 MNVLSVSSEIY-----------PLIKTGGLADVVGALPIALEAHG--VRTRTLIPGYPA--VKAAVTDPVKCFEFTDLLG 65 (485)
T ss_dssp CEEEEECSCBT-----------TTBCSSHHHHHHHHHHHHHHTTT--CEEEEEEECCHH--HHHHCCSCEEEEEESCSSS
T ss_pred CEEEEEEEEEC-----------CCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCC--CCCCCCCCCEEEEEEEECC
T ss_conf 96999944651-----------56566549999999999999769--869999156443--3444356513689998308
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCC------CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 863444688899299982699965453323-5798------736789889999999878988663599999650999859
Q 001541 242 DDFMDDMGESSGAYIIRIPFGPKDKYIAKE-LLWP------HIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHY 314 (1057)
Q Consensus 242 ~~~~~~~~~~~gv~iirip~~~~~~~l~k~-~l~~------~l~~f~~~~l~~~~~~~k~L~~~~~~~~~~~pDIIh~h~ 314 (1057)
..........+|+.+++++.... ..+. .++. +..... .+..+...+.+.+...+ +..+|||||+|.
T Consensus 66 ~~~~~~~~~~~gv~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~DiIh~~~ 138 (485)
T 1rzu_A 66 EKADLLEVQHERLDLLILDAPAY---YERSGGPYLGQTGKDYPDNWK-RFAALSLAAARIGAGVL---PGWRPDMVHAHD 138 (485)
T ss_dssp CCEEEEEEEETTEEEEEEECHHH---HCSSSCSSBCTTSSBCTTHHH-HHHHHHHHHHHHHTTCS---SSCCCSEEEEEH
T ss_pred CEEEEEEEEECCCEEEEEECHHH---HCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHC---CCCCCCEEEECC
T ss_conf 74789999966956999848677---277766558865666530679-99999999999999861---579998899646
Q ss_pred CCCHHHHHHHHHC--CCCCEEEEECCCCHHHH---HHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHCCCEEEECCHHH
Q ss_conf 9814899999803--99979999258832047---999995110267787-78789898999998750379999469789
Q 001541 315 ADAGDSAALLSGA--LNVPMLFTGHSLGRDKL---EQLLKQARLSRDEIN-ATYKIMRRIEAEELSLDASEIVITSTRQE 388 (1057)
Q Consensus 315 ~~~~~~a~~l~~~--~~iP~V~t~H~l~~~~~---~~l~~~g~~~~~~i~-~~yk~~~ri~~E~~~l~~ad~Vi~~S~~~ 388 (1057)
+.++..+..+++. .++|+|+|.|+...... ..+...|. ...... ....+......++..++.+|.|+++|+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 217 (485)
T 1rzu_A 139 WQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLAL-PAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSY 217 (485)
T ss_dssp HHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCC-CGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHH
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCC-CHHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHH
T ss_conf 3055789997310358997899966754468788778734399-803202000132562359998886467799608758
Q ss_pred HHHHHHH-HCC-CCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHH
Q ss_conf 9999954-079-98478999999682033445889996999499987898678999999977889999999998-22799
Q 001541 389 IEEQWRL-YDG-FDPVLERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDP-PIWSE 465 (1057)
Q Consensus 389 ~~~~~~~-y~~-~~~~~~~~l~~~~~~gv~~~g~~~~kv~VIpnGiD~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 465 (1057)
.+.+... ++. .+. .++.+..++.+||||+|.+.|.+....... ..+......... .....
T Consensus 218 ~~~~~~~~~g~~~~~---------------~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 280 (485)
T 1rzu_A 218 AEEILTAEFGMGLEG---------------VIGSRAHVLHGIVNGIDADVWNPATDHLIH--DNYSAANLKNRALNKKAV 280 (485)
T ss_dssp HHHTTSHHHHTTCHH---------------HHHTTGGGEEECCCCBCTTTSCTTTCTTSS--SCCBTTBCTTHHHHHHHH
T ss_pred HHHHHCCCCCCCHHH---------------HHHHHCCCCEEECCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHH
T ss_conf 999835435766589---------------998606881697089860205886651100--012432445678869999
Q ss_pred HHHHHCCCC-CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEE-EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 876417999-859999848999789999999997640135998499-999508997510010189999999999871999
Q 001541 466 IMRFFTNPR-KPVILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDGIDEMSSTSASVLLSVLKLIDKYDLY 543 (1057)
Q Consensus 466 ~~~~~~~~~-~~~Il~vGRl~~~Kgi~~Ll~A~~~l~~~~~~~~l~-LIvG~~~~~~~~~~~~~~~~~~i~~l~~~~~l~ 543 (1057)
..++...++ +++|+++||+.+.||++.+++|+..+.+ + ++. +|+|+++. .+...+.+++.+++
T Consensus 281 r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~--~~~l~ivG~g~~---------~~~~~l~~~~~~~~-- 345 (485)
T 1rzu_A 281 AEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--L--GGRLVVLGAGDV---------ALEGALLAAASRHH-- 345 (485)
T ss_dssp HHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--T--TCEEEEEECBCH---------HHHHHHHHHHHHTT--
T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--C--CCEEEEEECCCH---------HHHHHHHHHHHHCC--
T ss_conf 99629888998399997257531287999999999872--6--956999968946---------89999999998678--
Q ss_pred CCEE-ECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHCC---------CCEE
Q ss_conf 9778-39999978299999970149939997299899878999999839969983888810133039---------8469
Q 001541 544 GQVA-YPKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVL---------DNGL 613 (1057)
Q Consensus 544 ~~V~-f~g~v~~~ei~~ly~~Aa~~~dv~i~ps~~Egfgl~llEAmA~G~PVIat~~Gg~~eii~~~---------~~Gl 613 (1057)
++|. |.|+ +.+++..+|+.| |++|+||..|+||++++||||||+|||+++.||..|++.++ .+|+
T Consensus 346 ~~v~~~~g~-~~~~~~~~~~~a----dv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~ 420 (485)
T 1rzu_A 346 GRVGVAIGY-NEPLSHLMQAGC----DAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGV 420 (485)
T ss_dssp TTEEEEESC-CHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBE
T ss_pred CCEEEECCC-CHHHHHHHHHCC----CEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHEECCCCCCCCCCCCCCCE
T ss_conf 868994389-979999998529----999978446887779999997799779808998311321565332345677634
Q ss_pred EECCCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 919999999999999997---1999999999999899440998999999999998033999
Q 001541 614 LVDPHDQQSVADALLKLV---ADKQLWARCRQNGLKNIHLFSWPEHCKTYLSRIAGCKPRH 671 (1057)
Q Consensus 614 lv~p~d~e~la~aI~~ll---~d~~~~~~~~~~a~~~v~~fsw~~~a~~~l~~l~~~~~~~ 671 (1057)
++++.|+++++++|.+++ .+++.++++++++++ +.|||+.++++|+++|+++....
T Consensus 421 l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 421 QFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYAALYSQLISKG 479 (485)
T ss_dssp EESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHHHHHHHHTC--
T ss_pred EECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 867899999999999999872799999999999998--86896999999999999863799
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=328.86 Aligned_cols=443 Identities=15% Similarity=0.131 Sum_probs=279.9
Q ss_pred EEEEEEECCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCC--CCCCCCCCC
Q ss_conf 19999821344445786889999--88827799999999982399903699983387899889756986--322589999
Q 001541 166 LYIVLISIHGLIRGENMELGRDS--DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEP--TEMLTPRNS 241 (1057)
Q Consensus 166 l~Illis~~~~~~~~~~~~g~~~--d~GG~~~yv~~LA~aLa~~G~v~~V~vit~~~~~~~~~~~y~~~--~e~l~~~~~ 241 (1057)
|||++|+.... | ..||+++++.+|+++|+++| |+|+|+|..... ....+... ...... ..
T Consensus 1 MkIl~v~~~~~-----------P~~~~GG~~~~~~~la~~L~~~G--~~V~vi~~~~~~--~~~~~~~~~~~~~~~~-~~ 64 (485)
T 2qzs_A 1 MQVLHVCSEMF-----------PLLKTGGLADVIGALPAAQIADG--VDARVLLPAFPD--IRRGVTDAQVVSRRDT-FA 64 (485)
T ss_dssp CEEEEECSCBT-----------TTBCSSHHHHHHHHHHHHHHHTT--CEEEEEEECCHH--HHHHCTTCEEEEEECC-TT
T ss_pred CEEEEEEEECC-----------CCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCC--CCCCCCCCEEEEEECC-CC
T ss_conf 96999964104-----------66567739999999999999749--878999447643--4543456405787415-68
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CC------CCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCEEEEEC
Q ss_conf 8634446888992999826999654533235-79------87367898899999998789886635999-9965099985
Q 001541 242 DDFMDDMGESSGAYIIRIPFGPKDKYIAKEL-LW------PHIPEFVDGALNHIIRMSNVLGEQIGGGK-PVWPVAIHGH 313 (1057)
Q Consensus 242 ~~~~~~~~~~~gv~iirip~~~~~~~l~k~~-l~------~~l~~f~~~~l~~~~~~~k~L~~~~~~~~-~~~pDIIh~h 313 (1057)
..........+|+.+++++... +..+.. .+ .+...... +..+. +.+.+.+.... ..+|||||+|
T Consensus 65 ~~~~~~~~~~~gv~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~Divh~~ 136 (485)
T 2qzs_A 65 GHITLLFGHYNGVGIYLIDAPH---LYDRPGSPYHDTNLFAYTDNVLR-FALLG----WVGAEMASGLDPFWRPDVVHAH 136 (485)
T ss_dssp CCEEEEEEEETTEEEEEEECHH---HHCCSSCSSBCTTSCBCTTHHHH-HHHHH----HHHHHHTTTSSTTCCCSEEEEE
T ss_pred CCEEEEEEEECCCEEEEEECHH---HCCCCCCCCCCCCCCCCCCHHHH-HHHHH----HHHHHHHHHHCCCCCCCEEEEE
T ss_conf 7179999987894799970826---50689876677545778735899-99999----9999999984567899789960
Q ss_pred CCCCHHHHHHHH-HCCCCCEEEEECCCCHHHH---HHHHHHHHCCHHHHHH-HHHHHHHHHHHHHHHHCCCEEEECCHHH
Q ss_conf 998148999998-0399979999258832047---9999951102677877-8789898999998750379999469789
Q 001541 314 YADAGDSAALLS-GALNVPMLFTGHSLGRDKL---EQLLKQARLSRDEINA-TYKIMRRIEAEELSLDASEIVITSTRQE 388 (1057)
Q Consensus 314 ~~~~~~~a~~l~-~~~~iP~V~t~H~l~~~~~---~~l~~~g~~~~~~i~~-~yk~~~ri~~E~~~l~~ad~Vi~~S~~~ 388 (1057)
.+.++.++..++ +..++|+|+|.|+...... ..+...|. ....... ...+......++..+..+|.|+++|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 215 (485)
T 2qzs_A 137 DWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQL-PWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTY 215 (485)
T ss_dssp TGGGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTC-CGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHH
T ss_pred CCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCC-CCHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHH
T ss_conf 6213378999754368997899946841357889888876499-913213111232465469999987538688568899
Q ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHCCCCCCCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHH
Q ss_conf 9999954-079984789999996820334458899--96999499987898678999999977889999999998-2279
Q 001541 389 IEEQWRL-YDGFDPVLERKLRARIKRNVSCYGKFM--PRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDP-PIWS 464 (1057)
Q Consensus 389 ~~~~~~~-y~~~~~~~~~~l~~~~~~gv~~~g~~~--~kv~VIpnGiD~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 464 (1057)
.+.+... ++.... ..++. +. .++.+||||+|.+.|.+...... ...+......... ....
T Consensus 216 ~~~~~~~~~~~~~~---~~~~~-----------~~~~~~~~vi~ngvd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 279 (485)
T 2qzs_A 216 AREITEPQFAYGME---GLLQQ-----------RHREGRLSGVLNGVDEKIWSPETDLLL--ASRYTRDTLEDKAENKRQ 279 (485)
T ss_dssp HHHTTSHHHHTTCH---HHHHH-----------HHHTTCEEECCCCCCTTTSCTTTCTTS--SSCCCTTCGGGGHHHHHH
T ss_pred HHHHHCCCCCCCHH---HHHHH-----------HCCCCCEEEEECCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHH
T ss_conf 99985401472468---99985-----------066786699746987664586444222--123663006577884999
Q ss_pred HHHHHHCCC--CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEE-EEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 987641799--9859999848999789999999997640135998499-9995089975100101899999999998719
Q 001541 465 EIMRFFTNP--RKPVILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDGIDEMSSTSASVLLSVLKLIDKYD 541 (1057)
Q Consensus 465 ~~~~~~~~~--~~~~Il~vGRl~~~Kgi~~Ll~A~~~l~~~~~~~~l~-LIvG~~~~~~~~~~~~~~~~~~i~~l~~~~~ 541 (1057)
...++...+ +.++|+++||+.+.||++.+++|+..+.. + ++. +|+|+++. .+...+.+++.+++
T Consensus 280 ~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~--~~~l~ivG~g~~---------~~~~~l~~~~~~~~ 346 (485)
T 2qzs_A 280 LQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--Q--GGQLALLGAGDP---------VLQEGFLAAAAEYP 346 (485)
T ss_dssp HHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--T--TCEEEEEEEECH---------HHHHHHHHHHHHST
T ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--C--CCEEEEEECCCH---------HHHHHHHHHHHHCC
T ss_conf 9987198889997399996667543587999999999862--7--948999928956---------78999999997579
Q ss_pred CCCCEE-ECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHCC---------CC
Q ss_conf 999778-39999978299999970149939997299899878999999839969983888810133039---------84
Q 001541 542 LYGQVA-YPKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVL---------DN 611 (1057)
Q Consensus 542 l~~~V~-f~g~v~~~ei~~ly~~Aa~~~dv~i~ps~~Egfgl~llEAmA~G~PVIat~~Gg~~eii~~~---------~~ 611 (1057)
++|. |.|+ +.+++..+|+.| |++|+||..|+||++++||||||+|||+++.||..|++.++ .+
T Consensus 347 --~~v~~~~g~-~~~~~~~~~~~a----dv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~ 419 (485)
T 2qzs_A 347 --GQVGVQIGY-HEAFSHRIMGGA----DVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVAS 419 (485)
T ss_dssp --TTEEEEESC-CHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCC
T ss_pred --CCEEEECCC-CHHHHHHHHHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEECCCCCCCCCCCCCC
T ss_conf --938994789-979999999758----8999788567876799999977997798789983255215764434446664
Q ss_pred EEEECCCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 69919999999999999997---1999999999999899440998999999999998033999
Q 001541 612 GLLVDPHDQQSVADALLKLV---ADKQLWARCRQNGLKNIHLFSWPEHCKTYLSRIAGCKPRH 671 (1057)
Q Consensus 612 Gllv~p~d~e~la~aI~~ll---~d~~~~~~~~~~a~~~v~~fsw~~~a~~~l~~l~~~~~~~ 671 (1057)
|+++++.|+++++++|.+++ .+++.++++++++++ +.|||+.++++|+++|+++...+
T Consensus 420 G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~~~ 480 (485)
T 2qzs_A 420 GFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYRELYYRLKLEH 480 (485)
T ss_dssp BEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC---
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 59977899999999999999870899999999999876--32898999999999999865421
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=1.00 E-value=1 Score=325.02 Aligned_cols=373 Identities=17% Similarity=0.202 Sum_probs=280.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62199998213444457868899998882779999999998239990369998338789988975698632258999986
Q 001541 164 KKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDD 243 (1057)
Q Consensus 164 ~~l~Illis~~~~~~~~~~~~g~~~d~GG~~~yv~~LA~aLa~~G~v~~V~vit~~~~~~~~~~~y~~~~e~l~~~~~~~ 243 (1057)
++|||++++.... |..||.++++..|+++| .| |+|+|++........
T Consensus 3 ~~mkIl~v~~~~~-----------p~~gG~~~~~~~l~~~L--~g--~~v~v~~~~~~~~~~------------------ 49 (394)
T 3okp_A 3 ASRKTLVVTNDFP-----------PRIGGIQSYLRDFIATQ--DP--ESIVVFASTQNAEEA------------------ 49 (394)
T ss_dssp -CCCEEEEESCCT-----------TSCSHHHHHHHHHHTTS--CG--GGEEEEEECSSHHHH------------------
T ss_pred CCCEEEEEECCCC-----------CCCCHHHHHHHHHHHHH--CC--CEEEEEECCCCCCCH------------------
T ss_conf 8866999927668-----------86551999999999985--69--768999778886424------------------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 34446888992999826999654533235798736789889999999878988663599999650999859981489999
Q 001541 244 FMDDMGESSGAYIIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSAAL 323 (1057)
Q Consensus 244 ~~~~~~~~~gv~iirip~~~~~~~l~k~~l~~~l~~f~~~~l~~~~~~~k~L~~~~~~~~~~~pDIIh~h~~~~~~~a~~ 323 (1057)
.......++.+++++.... ++.. .+...+ .+.+.+ .+||+||+|..........
T Consensus 50 --~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~l-------~~~~~~-------~~~Dvv~~~~~~~~~~~~~ 103 (394)
T 3okp_A 50 --HAYDKTLDYEVIRWPRSVM---------LPTP-TTAHAM-------AEIIRE-------REIDNVWFGAAAPLALMAG 103 (394)
T ss_dssp --HHHHTTCSSEEEEESSSSC---------CSCH-HHHHHH-------HHHHHH-------TTCSEEEESSCTTGGGGHH
T ss_pred --HHHCCCCCEEEEECCCCCC---------CCCH-HHHHHH-------HHHHHH-------CCCCEEEECCCCHHHHHHH
T ss_conf --4433456628998456545---------5551-469999-------999876-------3898899888544889999
Q ss_pred HHHCCCCC-EEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCHH
Q ss_conf 98039997-99992588320479999951102677877878989899999875037999946978999999540799847
Q 001541 324 LSGALNVP-MLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPV 402 (1057)
Q Consensus 324 l~~~~~iP-~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~yk~~~ri~~E~~~l~~ad~Vi~~S~~~~~~~~~~y~~~~~~ 402 (1057)
+++..++| +|++.|+...... .+...++ .++..++.+|.++++|+...+.+...+.. .
T Consensus 104 ~~~~~~~~~~i~~~h~~~~~~~----------------~~~~~~~--~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~-- 162 (394)
T 3okp_A 104 TAKQAGASKVIASTHGHEVGWS----------------MLPGSRQ--SLRKIGTEVDVLTYISQYTLRRFKSAFGS-H-- 162 (394)
T ss_dssp HHHHTTCSEEEEECCSTHHHHT----------------TSHHHHH--HHHHHHHHCSEEEESCHHHHHHHHHHHCS-S--
T ss_pred HHHHCCCCCEEEEECCCHHHHH----------------HCCHHHH--HHHHHHHHCCEEEECCHHHHHHHHHHCCC-C--
T ss_conf 9975189819999346423332----------------1220348--99999986797997688999999984189-9--
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 89999996820334458899969994999878986789999999778899999999982279987641799985999984
Q 001541 403 LERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALA 482 (1057)
Q Consensus 403 ~~~~l~~~~~~gv~~~g~~~~kv~VIpnGiD~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~vG 482 (1057)
.++.+||||+|...|.+... ........++...++.++|+++|
T Consensus 163 --------------------~~~~vi~ngv~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~i~~~G 205 (394)
T 3okp_A 163 --------------------PTFEHLPSGVDVKRFTPATP-----------------EDKSATRKKLGFTDTTPVIACNS 205 (394)
T ss_dssp --------------------SEEEECCCCBCTTTSCCCCH-----------------HHHHHHHHHTTCCTTCCEEEEES
T ss_pred --------------------CCEEEECCCCCHHHCCCCCC-----------------HHHHHHHHHCCCCCCCEEEEEEE
T ss_conf --------------------98588369858887588772-----------------14689998649985766999976
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHH
Q ss_conf 89997899999999976401359984999995089975100101899999999998719999778399999782999999
Q 001541 483 RPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYR 562 (1057)
Q Consensus 483 Rl~~~Kgi~~Ll~A~~~l~~~~~~~~l~LIvG~~~~~~~~~~~~~~~~~~i~~l~~~~~l~~~V~f~g~v~~~ei~~ly~ 562 (1057)
|+.+.||++.+++|+..+....+...+ +|+|+++. ...+.+++ .++.++|.|.|+++.+++..+|+
T Consensus 206 ~~~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~g~~-----------~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~ 271 (394)
T 3okp_A 206 RLVPRKGQDSLIKAMPQVIAARPDAQL-LIVGSGRY-----------ESTLRRLA--TDVSQNVKFLGRLEYQDMINTLA 271 (394)
T ss_dssp CSCGGGCHHHHHHHHHHHHHHSTTCEE-EEECCCTT-----------HHHHHHHT--GGGGGGEEEEESCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEE-EEECCCHH-----------HHHHHHHH--HCCCCEEEECCCCCHHHHHHHHH
T ss_conf 441345887999999998861898699-99868647-----------99999987--55457299907899789999998
Q ss_pred HHHCCCCEEEECCCC-------CCCCHHHHHHHHCCCCEEECCCCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCHH
Q ss_conf 701499399972998-------9987899999983996998388881013303984699199999999999999971999
Q 001541 563 LAAKTKGVFINPAFI-------EPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVADKQ 635 (1057)
Q Consensus 563 ~Aa~~~dv~i~ps~~-------Egfgl~llEAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~e~la~aI~~ll~d~~ 635 (1057)
.| |++|+||.. |+||++++|||++|+|||+++.|+..|++.++ +|+++++.|+++++++|.+++.+++
T Consensus 272 ~a----d~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~~ 346 (394)
T 3okp_A 272 AA----DIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDPI 346 (394)
T ss_dssp HC----SEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCHH
T ss_pred HC----CEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCC-CCEEECCCCHHHHHHHHHHHHHCHH
T ss_conf 68----999945755566656555673999999759979993899737787468-8567289999999999999981999
Q ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999998994-409989999999999980339999
Q 001541 636 LWARCRQNGLKNI-HLFSWPEHCKTYLSRIAGCKPRHP 672 (1057)
Q Consensus 636 ~~~~~~~~a~~~v-~~fsw~~~a~~~l~~l~~~~~~~~ 672 (1057)
.++++++++++.+ ++|+|+.++++|.++|+++.+...
T Consensus 347 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~~ 384 (394)
T 3okp_A 347 RRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKLA 384 (394)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999998747999999999999997203761
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=1.00 E-value=1 Score=322.15 Aligned_cols=369 Identities=16% Similarity=0.196 Sum_probs=267.8
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 19999821344445786889999888277999999999823999036999833878998897569863225899998634
Q 001541 166 LYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDDFM 245 (1057)
Q Consensus 166 l~Illis~~~~~~~~~~~~g~~~d~GG~~~yv~~LA~aLa~~G~v~~V~vit~~~~~~~~~~~y~~~~e~l~~~~~~~~~ 245 (1057)
|||++++.+.. ..||.++++.+|+++|+++| |+|++++.......
T Consensus 1 MkIl~i~~~~~------------~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~--------------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYF------------PFGGLQRDFMRIASTVAARG--HHVRVYTQSWEGDC--------------------- 45 (374)
T ss_dssp -CEEEECSEEC------------TTCHHHHHHHHHHHHHHHTT--CCEEEEESEECSCC---------------------
T ss_pred CEEEEEEEECC------------CCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCC---------------------
T ss_conf 96999972158------------87616359999999999679--84899964898878---------------------
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 44688899299982699965453323579873678988999999987898866359999965099985998148999998
Q 001541 246 DDMGESSGAYIIRIPFGPKDKYIAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAGDSAALLS 325 (1057)
Q Consensus 246 ~~~~~~~gv~iirip~~~~~~~l~k~~l~~~l~~f~~~~l~~~~~~~k~L~~~~~~~~~~~pDIIh~h~~~~~~~a~~l~ 325 (1057)
.+++.+++++...... .. ........+.+.+.+ .+||+||+|...++..+....
T Consensus 46 -----~~~~~v~~~~~~~~~~----------~~----~~~~~~~~l~~~i~~-------~~~Dvv~~~~~~~~~~~~~~~ 99 (374)
T 2iw1_A 46 -----PKAFELIQVPVKSHTN----------HG----RNAEYYAWVQNHLKE-------HPADRVVGFNKMPGLDVYFAA 99 (374)
T ss_dssp -----CTTCEEEECCCCCSSH----------HH----HHHHHHHHHHHHHHH-------SCCSEEEESSCCTTCSEEECC
T ss_pred -----CCCCEEEEECCCCCCC----------HH----HHHHHHHHHHHHHHC-------CCCCEEEEECCCCCCEEEECC
T ss_conf -----8774799971686443----------01----677899999999850-------699889996677885213001
Q ss_pred HCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH--CCCEEEECCHHHHHHHHHHHCCCCHHH
Q ss_conf 039997999925883204799999511026778778789898999998750--379999469789999995407998478
Q 001541 326 GALNVPMLFTGHSLGRDKLEQLLKQARLSRDEINATYKIMRRIEAEELSLD--ASEIVITSTRQEIEEQWRLYDGFDPVL 403 (1057)
Q Consensus 326 ~~~~iP~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~yk~~~ri~~E~~~l~--~ad~Vi~~S~~~~~~~~~~y~~~~~~~ 403 (1057)
....+|.+.+.|+.... ....++....+ ++..+. .+|.++++|+...+.+...++. .+
T Consensus 100 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~-- 159 (374)
T 2iw1_A 100 DVCYAEKVAQEKGFLYR---------------LTSRYRHYAAF--ERATFEQGKSTKLMMLTDKQIADFQKHYQT-EP-- 159 (374)
T ss_dssp SCCHHHHHHHHCCHHHH---------------TSHHHHHHHHH--HHHHHSTTCCCEEEESCHHHHHHHHHHHCC-CG--
T ss_pred CCCCCEEEEECCCCHHH---------------HCHHHHHHHHH--HHHHHHCCCCCEEEECCHHHHHHHHHHHCC-CH--
T ss_conf 56542133303562121---------------04778999999--999864267757998698999999997189-71--
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 99999968203344588999699949998789867899999997788999999999822799876417999859999848
Q 001541 404 ERKLRARIKRNVSCYGKFMPRMAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALAR 483 (1057)
Q Consensus 404 ~~~l~~~~~~gv~~~g~~~~kv~VIpnGiD~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~vGR 483 (1057)
.++.+||||+|...|.+... .+.......++...+++++|+++||
T Consensus 160 -------------------~~~~vi~ngv~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~G~ 204 (374)
T 2iw1_A 160 -------------------ERFQILPPGIYPDRKYSEQI----------------PNSREIYRQKNGIKEQQNLLLQVGS 204 (374)
T ss_dssp -------------------GGEEECCCCCCGGGSGGGSC----------------TTHHHHHHHHTTCCTTCEEEEEECS
T ss_pred -------------------HHEEEECCCCCHHHCCCCCC----------------HHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf -------------------10688569858776176442----------------3579999997289978729999646
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHH
Q ss_conf 9997899999999976401359984999-995089975100101899999999998719999778399999782999999
Q 001541 484 PDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYR 562 (1057)
Q Consensus 484 l~~~Kgi~~Ll~A~~~l~~~~~~~~l~L-IvG~~~~~~~~~~~~~~~~~~i~~l~~~~~l~~~V~f~g~v~~~ei~~ly~ 562 (1057)
+.+.||++.+++|+..+.... .+++.+ ++|+++. ..+.+++.++++.++|.|.|+ .+++..+|+
T Consensus 205 ~~~~K~~~~li~a~~~l~~~~-~~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~ 269 (374)
T 2iw1_A 205 DFGRKGVDRSIEALASLPESL-RHNTLLFVVGQDKP------------RKFEALAEKLGVRSNVHFFSG--RNDVSELMA 269 (374)
T ss_dssp CTTTTTHHHHHHHHHTSCHHH-HHTEEEEEESSSCC------------HHHHHHHHHHTCGGGEEEESC--CSCHHHHHH
T ss_pred CHHHCCHHHHHHHHHHHHHCC-CCCEEEEEECCCCH------------HHHHHHHHHCCCCCCEEECCC--CCCHHHHHH
T ss_conf 410138899999999867604-88669999708987------------999999997398773797788--403899998
Q ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 701499399972998998789999998399699838888101330398469919-9999999999999971999999999
Q 001541 563 LAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVD-PHDQQSVADALLKLVADKQLWARCR 641 (1057)
Q Consensus 563 ~Aa~~~dv~i~ps~~Egfgl~llEAmA~G~PVIat~~Gg~~eii~~~~~Gllv~-p~d~e~la~aI~~ll~d~~~~~~~~ 641 (1057)
.| |++|+||..|+||++++||||||+|||+++.||..|++.++.+|++++ |.|+++++++|.+++++++.+++++
T Consensus 270 ~a----d~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 345 (374)
T 2iw1_A 270 AA----DLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWA 345 (374)
T ss_dssp HC----SEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HC----CEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 46----88983542477556999999779988982699804443069831996799998999999999971949999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9998994409989999999999980339
Q 001541 642 QNGLKNIHLFSWPEHCKTYLSRIAGCKP 669 (1057)
Q Consensus 642 ~~a~~~v~~fsw~~~a~~~l~~l~~~~~ 669 (1057)
+++++.+..|+|..+++.+.++++.++.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 346 ENARHYADTQDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999875389999999999998636
No 10
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=1.00 E-value=1 Score=317.97 Aligned_cols=361 Identities=17% Similarity=0.240 Sum_probs=270.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 98882779999999998239990369998338789988975698632258999986344468889929998269996545
Q 001541 188 SDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTPRNSDDFMDDMGESSGAYIIRIPFGPKDKY 267 (1057)
Q Consensus 188 ~d~GG~~~yv~~LA~aLa~~G~v~~V~vit~~~~~~~~~~~y~~~~e~l~~~~~~~~~~~~~~~~gv~iirip~~~~~~~ 267 (1057)
|..||.+.++.+|+++|+++| |+|++++..... .. . ...+++.+..++..... .
T Consensus 24 p~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~~-~~------~----------------~~~~~i~~~~~~~~~~~-~ 77 (394)
T 2jjm_A 24 PSVGGSGVVGTELGKQLAERG--HEIHFITSGLPF-RL------N----------------KVYPNIYFHEVTVNQYS-V 77 (394)
T ss_dssp C--CHHHHHHHHHHHHHHHTT--CEEEEECSSCC---------------------------CCCTTEEEECCCCC-----
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCC-CC------C----------------CCCCCEEEEECCCCCCC-C
T ss_conf 898987899999999999689--879999688877-62------0----------------03786289852566654-0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH-HHHHHHHHCC--CCCEEEEECCCCHHHH
Q ss_conf 332357987367898899999998789886635999996509998599814-8999998039--9979999258832047
Q 001541 268 IAKELLWPHIPEFVDGALNHIIRMSNVLGEQIGGGKPVWPVAIHGHYADAG-DSAALLSGAL--NVPMLFTGHSLGRDKL 344 (1057)
Q Consensus 268 l~k~~l~~~l~~f~~~~l~~~~~~~k~L~~~~~~~~~~~pDIIh~h~~~~~-~~a~~l~~~~--~iP~V~t~H~l~~~~~ 344 (1057)
.. ...+... ....+.+.+.+ .+||+||+|+.... ..+...++.. ++|+|++.|+......
T Consensus 78 ~~---~~~~~~~-------~~~~l~~~l~~-------~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~ 140 (394)
T 2jjm_A 78 FQ---YPPYDLA-------LASKMAEVAQR-------ENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVL 140 (394)
T ss_dssp CC---SCCHHHH-------HHHHHHHHHHH-------HTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTT
T ss_pred CC---CCCCCHH-------HHHHHHHHHHH-------CCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 01---5652079-------99999999977-------6999999724337778899988862678777999715752125
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999511026778778789898999998750379999469789999995407998478999999682033445889996
Q 001541 345 EQLLKQARLSRDEINATYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRNVSCYGKFMPR 424 (1057)
Q Consensus 345 ~~l~~~g~~~~~~i~~~yk~~~ri~~E~~~l~~ad~Vi~~S~~~~~~~~~~y~~~~~~~~~~l~~~~~~gv~~~g~~~~k 424 (1057)
+. . ..+ ++ .++..++.+|.++++|+...+.+...+.. + .+
T Consensus 141 ------~~-~-----~~~---~~--~~~~~~~~ad~ii~~s~~~~~~~~~~~~~--~---------------------~~ 180 (394)
T 2jjm_A 141 ------GS-D-----PSL---NN--LIRFGIEQSDVVTAVSHSLINETHELVKP--N---------------------KD 180 (394)
T ss_dssp ------TT-C-----TTT---HH--HHHHHHHHSSEEEESCHHHHHHHHHHTCC--S---------------------SC
T ss_pred ------CC-C-----HHH---HH--HHHHHHHHCCEEEECCHHHHHHHHHHHCC--C---------------------CC
T ss_conf ------88-8-----778---89--99999861998999799999999985287--6---------------------56
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99949998789867899999997788999999999822799876417999859999848999789999999997640135
Q 001541 425 MAIIPPGMEFHHIVPQDGDMDGETEGNEDNPASPDPPIWSEIMRFFTNPRKPVILALARPDPKKNITTLVKAFGECRPLR 504 (1057)
Q Consensus 425 v~VIpnGiD~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~vGRl~~~Kgi~~Ll~A~~~l~~~~ 504 (1057)
+.+||||+|...|.+.. ......++..+++.++|+++||+.+.||++.+++|+..+...
T Consensus 181 ~~vi~ngv~~~~~~~~~--------------------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~- 239 (394)
T 2jjm_A 181 IQTVYNFIDERVYFKRD--------------------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE- 239 (394)
T ss_dssp EEECCCCCCTTTCCCCC--------------------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-
T ss_pred EEEECCCCCHHHCCCCC--------------------HHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-
T ss_conf 79955875687608863--------------------488998719998880899950466535889999999999853-
Q ss_pred CCCCEE-EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHH
Q ss_conf 998499-9995089975100101899999999998719999778399999782999999701499399972998998789
Q 001541 505 ELANLT-LIMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLT 583 (1057)
Q Consensus 505 ~~~~l~-LIvG~~~~~~~~~~~~~~~~~~i~~l~~~~~l~~~V~f~g~v~~~ei~~ly~~Aa~~~dv~i~ps~~Egfgl~ 583 (1057)
. ++. +|+|+++. ...+.+++.++++.++|.|.|+ .+++..+|+.| |++|+||..|+||++
T Consensus 240 ~--~~~l~i~G~g~~-----------~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~a----dv~v~ps~~e~~~~~ 300 (394)
T 2jjm_A 240 V--DAKLLLVGDGPE-----------FCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMS----DLMLLLSEKESFGLV 300 (394)
T ss_dssp S--CCEEEEECCCTT-----------HHHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTC----SEEEECCSCCSCCHH
T ss_pred C--CCEEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEECC--HHHHHHHHHHC----CEEEECCCCCCCCHH
T ss_conf 7--978999889657-----------9999999997399875999276--66599999867----899965666787268
Q ss_pred HHHHHHCCCCEEECCCCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHH
Q ss_conf 99999839969983888810133039846991999999999999999719999999999998994-40998999999999
Q 001541 584 LIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSVADALLKLVADKQLWARCRQNGLKNI-HLFSWPEHCKTYLS 662 (1057)
Q Consensus 584 llEAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~e~la~aI~~ll~d~~~~~~~~~~a~~~v-~~fsw~~~a~~~l~ 662 (1057)
++||||||+|||+++.||..|++.++.+|+++++.|+++++++|.+++++++.++++++++++.+ +.|+|+.++++|++
T Consensus 301 ~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 380 (394)
T 2jjm_A 301 LLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYET 380 (394)
T ss_dssp HHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999649988981589807776348853996899999999999999749799999999999999873799999999999
Q ss_pred HHHCCCCCC
Q ss_conf 998033999
Q 001541 663 RIAGCKPRH 671 (1057)
Q Consensus 663 ~l~~~~~~~ 671 (1057)
+|+++....
T Consensus 381 ~~~~~~~~~ 389 (394)
T 2jjm_A 381 IYYDVLRDD 389 (394)
T ss_dssp HHHHTC---
T ss_pred HHHHHHHHH
T ss_conf 999999666
Done!