Query 001543
Match_columns 1057
No_of_seqs 189 out of 193
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 16:32:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001543.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_844-848//hhsearch_pdb/001543hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl7_A Ephrin receptor; ATP-bi 1.0 1 1 44.6 3.0 38 795-834 264-303 (536)
2 3u3p_A Tumor necrosis factor r 1.0 1 1 35.2 3.5 36 795-831 106-150 (313)
3 3me4_A Tumor necrosis factor r 1.0 1 1 35.0 3.3 66 791-861 42-118 (216)
4 1jma_B Herpesvirus entry media 1.0 1 1 34.6 3.7 64 794-862 15-89 (167)
5 2e4u_A Metabotropic glutamate 1.0 1 1 34.4 1.0 40 793-836 484-532 (555)
6 2hey_R Tumor necrosis factor r 1.0 1 1 33.2 2.4 61 795-861 19-90 (146)
7 2uwi_A CRME protein; receptor, 1.0 1 1 32.7 2.3 63 793-861 15-88 (142)
8 1du3_A Death receptor 5; trail 1.0 1 1 32.3 3.5 67 791-863 21-93 (130)
9 3alq_R Tumor necrosis factor r 1.0 1 1 32.2 3.4 63 794-861 21-93 (173)
10 3k51_B Decoy receptor 3; DCR3, 1.0 1 1 32.1 3.5 64 794-861 21-93 (176)
No 1
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=1.00 E-value=1 Score=44.56 Aligned_cols=38 Identities=26% Similarity=0.567 Sum_probs=31.5
Q ss_pred CCCCCCCCC--CCCCEECCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 358999875--4341248999500447999987202899999
Q 001543 795 GKACPRGLY--GVFCEECPVGTFKNVSGSDRALCRNCSSNEL 834 (1057)
Q Consensus 795 g~~CP~G~~--G~fC~eCp~GtYK~~~Gs~~~~C~pC~~~~l 834 (1057)
...|.+||. +-.|+.||.|+||...+ ...|.|||++..
T Consensus 264 ~C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S~ 303 (536)
T 3fl7_A 264 QCLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHTL 303 (536)
T ss_dssp CCEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSEE
T ss_pred CEECCCCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCCCCC
T ss_conf 2766676446996554258998766678--985006888777
No 2
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=1.00 E-value=1 Score=35.21 Aligned_cols=36 Identities=31% Similarity=0.704 Sum_probs=23.6
Q ss_pred CCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCC
Q ss_conf 358999875---------4341248999500447999987202899
Q 001543 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSS 831 (1057)
Q Consensus 795 g~~CP~G~~---------G~fC~eCp~GtYK~~~Gs~~~~C~pC~~ 831 (1057)
-..||+|++ ...|+.|+.|||.+... ....|+||..
T Consensus 106 Ct~CppG~gV~~~cT~tsDTvC~~Cp~GTFSd~~S-s~~~C~pcT~ 150 (313)
T 3u3p_A 106 HTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPS-SVMKCKAYTD 150 (313)
T ss_dssp CCCBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-SSCCCEECCC
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCC
T ss_conf 56589997564358778787650599970038888-9866423885
No 3
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=1.00 E-value=1 Score=34.96 Aligned_cols=66 Identities=14% Similarity=0.284 Sum_probs=37.7
Q ss_pred CEEECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC--CCCCCCCCCCCCC
Q ss_conf 4598358999875---------4341248999500447999987202899999997303203586--3488999643588
Q 001543 791 GTVTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGG--VTECPCPYKCVSE 859 (1057)
Q Consensus 791 Gti~g~~CP~G~~---------G~fC~eCp~GtYK~~~Gs~~~~C~pC~~~~lp~ra~~i~~~gg--~~~~~Cpy~C~sd 859 (1057)
+..-=+.||+|+| ...|++||.|+|..... ....|++|.. -.....++.++.. ...+.| .|.++
T Consensus 42 ~~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~G 116 (216)
T 3me4_A 42 LGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWN-EEDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTAG 116 (216)
T ss_dssp TTEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSB-CCSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECTT
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC--CCCCCCEEEEECCCCCCCCCC--CCCCC
T ss_conf 788868999895563568999998203289997625789-8876978888--788757688724778888502--58799
Q ss_pred CC
Q ss_conf 64
Q 001543 860 RY 861 (1057)
Q Consensus 860 k~ 861 (1057)
.|
T Consensus 117 ~y 118 (216)
T 3me4_A 117 YH 118 (216)
T ss_dssp EE
T ss_pred EE
T ss_conf 47
No 4
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=34.57 Aligned_cols=64 Identities=22% Similarity=0.502 Sum_probs=39.3
Q ss_pred ECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCC-CEEECCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 8358999875---------4341248999500447999987202899999997-3032035-863488999643588645
Q 001543 794 TGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHR-ALYIPIR-GGVTECPCPYKCVSERYH 862 (1057)
Q Consensus 794 ~g~~CP~G~~---------G~fC~eCp~GtYK~~~Gs~~~~C~pC~~~~lp~r-a~~i~~~-gg~~~~~Cpy~C~sdk~~ 862 (1057)
.=+.||+|+| ...|++||.|+|.+..+ ....|.+|.. -+.. ..++... .....+.| .|.++.|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n-~~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCB-CSSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCCC--CCCCCCEE
T ss_conf 888889998765678999998577298995136667-6763648744--566788688556788888700--38999652
No 5
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=34.36 Aligned_cols=40 Identities=18% Similarity=0.460 Sum_probs=30.0
Q ss_pred EECCCCCCCCCCC---------CCEECCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 9835899987543---------4124899950044799998720289999999
Q 001543 793 VTGKACPRGLYGV---------FCEECPVGTFKNVSGSDRALCRNCSSNELPH 836 (1057)
Q Consensus 793 i~g~~CP~G~~G~---------fC~eCp~GtYK~~~Gs~~~~C~pC~~~~lp~ 836 (1057)
+-...||||+... -|.+||.|.+. + |...|.+||.++.|+
T Consensus 484 ~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 484 QCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred EECCCCCCCEEEEECCCCEEEEECCCCCCCEEC--C--CCCCCEECCCCCCCC
T ss_conf 317977998055405897368978657775003--7--786644688323769
No 6
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=1.00 E-value=1 Score=33.23 Aligned_cols=61 Identities=18% Similarity=0.402 Sum_probs=34.9
Q ss_pred CCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCC-CEEECCCC-CCCCCCCCCCCCCCCC
Q ss_conf 358999875---------4341248999500447999987202899999997-30320358-6348899964358864
Q 001543 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHR-ALYIPIRG-GVTECPCPYKCVSERY 861 (1057)
Q Consensus 795 g~~CP~G~~---------G~fC~eCp~GtYK~~~Gs~~~~C~pC~~~~lp~r-a~~i~~~g-g~~~~~Cpy~C~sdk~ 861 (1057)
=+.||+|.| ...|++||.|+|.+..+ ...|++|.. -+.. ..++...- ....+.| .|.++.|
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~--~~~C~~C~~--C~~~~g~~~~~~Ct~t~dt~C--~C~~G~y 90 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVS--SKPCKPCTW--CNLRSGSERKQLCTATQDTVC--RCRAGTQ 90 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCB--SSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC--CCCCCCCCC--CCCCCCCEEECCCCCCCCCCC--CCCCCEE
T ss_conf 98989897040557899898755499988878888--874866687--887778367616766778644--4778706
No 7
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=1.00 E-value=1 Score=32.68 Aligned_cols=63 Identities=25% Similarity=0.581 Sum_probs=39.2
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCC--CCCCCCCCCCCCCCCC
Q ss_conf 98358999875---------434124899950044799998720289999999730320358--6348899964358864
Q 001543 793 VTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRG--GVTECPCPYKCVSERY 861 (1057)
Q Consensus 793 i~g~~CP~G~~---------G~fC~eCp~GtYK~~~Gs~~~~C~pC~~~~lp~ra~~i~~~g--g~~~~~Cpy~C~sdk~ 861 (1057)
.-=+.||||+| ..-|++||.|+|.+... ....|++|..-. + ...+.++. ....+.| .|.++.|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n-~~~~C~~C~~C~-~--~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYN-RSPWCHSCRGPC-G--TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSB-CCSSCEECCCCC-C--TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC-C--CCEEEEECCCCCCCCEE--ECCCCCE
T ss_conf 8887898897467668899897567589997745689-898467876705-6--88567615989879981--1899968
No 8
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=1.00 E-value=1 Score=32.27 Aligned_cols=67 Identities=16% Similarity=0.359 Sum_probs=41.6
Q ss_pred CEEECCCCCCCCC----CCCCEECCCC-CEECCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 4598358999875----4341248999-5004479999872028999999973032035-8634889996435886458
Q 001543 791 GTVTGKACPRGLY----GVFCEECPVG-TFKNVSGSDRALCRNCSSNELPHRALYIPIR-GGVTECPCPYKCVSERYHM 863 (1057)
Q Consensus 791 Gti~g~~CP~G~~----G~fC~eCp~G-tYK~~~Gs~~~~C~pC~~~~lp~ra~~i~~~-gg~~~~~Cpy~C~sdk~~~ 863 (1057)
....-..||+|+| ...|++||.| +|.+.... ...|++|.. -+.. .++... .....+.|. |.++.|..
T Consensus 21 ~~~~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~-~~~C~~C~~--C~~g-~~~~~~Ct~t~dtvC~--C~~G~y~~ 93 (130)
T 1du3_A 21 SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWND-LLFCLRCTR--CDSG-EVELSPCTTTRNTVCQ--CEEGTFRE 93 (130)
T ss_dssp CCCBTTBBCTTEEECSSSSCEEECCTTTEECCSSBC-CSSCEECCC--CCTT-EEEEECCCSSSCCEEE--ECTTCEEE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCC-CCCCCCCCC--CCCC-EEEECCCCCCCCCEEC--CCCCEEEC
T ss_conf 797058889986144899867209896987388998-771867777--8852-0565367788899851--99996879
No 9
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=32.21 Aligned_cols=63 Identities=17% Similarity=0.355 Sum_probs=34.4
Q ss_pred ECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCC
Q ss_conf 8358999875---------434124899950044799998720289999999730320358-6348899964358864
Q 001543 794 TGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRG-GVTECPCPYKCVSERY 861 (1057)
Q Consensus 794 ~g~~CP~G~~---------G~fC~eCp~GtYK~~~Gs~~~~C~pC~~~~lp~ra~~i~~~g-g~~~~~Cpy~C~sdk~ 861 (1057)
-=+.||+|+| ..-|++||.|+|++..+. ...|++|... -+. ..+....- ....+.| .|.++.|
T Consensus 21 cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~~-C~~-g~~~~~~Ct~t~d~~C--~C~~G~y 93 (173)
T 3alq_R 21 CCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNW-VPECLSCGSR-CSS-DQVETQACTREQNRIC--TCRPGWY 93 (173)
T ss_dssp EEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCC-CCT-TEEEEECCCSSSCCEE--EECTTEE
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCC-CCEEECCCCCCCCCEE--ECCCCEE
T ss_conf 8988987985566688999880776999964167998-9805889884-799-9788447889879946--7789857
No 10
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=1.00 E-value=1 Score=32.10 Aligned_cols=64 Identities=19% Similarity=0.435 Sum_probs=33.5
Q ss_pred ECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8358999875---------4341248999500447999987202899999997303203586348899964358864
Q 001543 794 TGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGGVTECPCPYKCVSERY 861 (1057)
Q Consensus 794 ~g~~CP~G~~---------G~fC~eCp~GtYK~~~Gs~~~~C~pC~~~~lp~ra~~i~~~gg~~~~~Cpy~C~sdk~ 861 (1057)
-=+.||+|+| ..-|++||.|+|..... ....|++|... -......+..=-....+.| .|.++.|
T Consensus 21 cC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~~-C~~~~~~~~~Ct~tsdtvC--~C~~G~~ 93 (176)
T 3k51_B 21 VCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWN-YLERCRYCNVL-CGEREEEARACHATHNRAC--RCRTGFF 93 (176)
T ss_dssp EEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECCCC-CCSSEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCCC-CCCCCEEECCCCCCCCCEE--ECCCCEE
T ss_conf 897979893467668999998402089987656789-89827354576-7999788436768778600--1568866
Done!