Query 001544
Match_columns 1057
No_of_seqs 734 out of 6823
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 17:07:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001544.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_844-848//hhsearch_pdb/001544hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 746.0 44.5 667 18-705 3-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 601.5 36.6 584 74-668 77-742 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 542.6 41.1 593 75-676 8-631 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 524.8 39.2 573 71-647 25-626 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 496.5 36.9 528 76-674 9-567 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 488.8 36.5 541 75-672 16-565 (606)
7 4eco_A Uncharacterized protein 1.0 1 1 480.5 22.7 525 26-668 29-601 (636)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 479.2 34.6 539 74-673 14-564 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 477.1 37.3 524 59-647 14-564 (844)
10 4ecn_A Leucine-rich repeat pro 1.0 1 1 468.4 29.7 547 23-668 265-865 (876)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=746.00 Aligned_cols=667 Identities=35% Similarity=0.520 Sum_probs=585.3
Q ss_pred HHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCC---CCCCCCCC
Q ss_conf 410599991019999999873135999866689789999986541038417998314775311467555---66434698
Q 001544 18 AASANTSIDIDQDALLALKDHITYDPTNFFAKNWLTNSTMVCNWTGVTCDINQRRVTALNISYLSLTGN---IPRQLGNL 94 (1057)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~---~~~~l~~l 94 (1057)
++++..+.+.|++||++||+++. ||. .+ .+|. .+.+||.|.||+|+ .++|++++|++.++.|. +|+.++.+
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~-~l-~~W~-~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L 76 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN-LL-PDWS-SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSL 76 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT-SS-TTCC-TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CCC-CC-CCCC-CCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCC
T ss_conf 67656687899999999996678-962-14-6878-99987688413878--9927898778998677557669657316
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 8786884788875566781323644343332125323487890--00034998938646897989978664668878862
Q 001544 95 SSLEILDLNFNRLSGEIPWELGNLAKLEKLLLHNNFLTGTIPF--SIFKLSSLLDLKLSDNNLTGTIPSHNLGNLSSLQL 172 (1057)
Q Consensus 95 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 172 (1057)
++|+.++++.|.+. .+|..++.+++|++|+|++|.+++.+|. .++.+++|++|+|++|.+++.+|...+.++++|++
T Consensus 77 ~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 77 TGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred CCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCE
T ss_conf 80224678688867-87033245788998989898578707896787278899989896882677479778563889998
Q ss_pred EECCCCCCCCCCCHH---HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 672588465668522---21134677568533677322694322778963289830441234743112388877589855
Q 001544 173 LDLSDNQLSGSIPSF---IFKISSLQALHFGNNRLSGELPANICDNLPFLNFFSVYKNMFYGGISSTLSNCKHLRILDLS 249 (1057)
Q Consensus 173 L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~Ls 249 (1057)
|++++|.+++..+.. +..+++|++|++++|.+++..|. ..++.|+.|+++.|.+.+.++. ++.+++|++|+++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECC
T ss_pred EECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECC
T ss_conf 98979835885871556643589889898978803465784---5478689898928827887711-1269999989794
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCEEEECCCCCCCC
Q ss_conf 887768944001374787489622133245448333466642299956472444458642245-4210998028733468
Q 001544 250 FNDLWGDIPKEIGNLTKLKELFLDFNILQGEIPHTVGNLHNLEYLSLVNNELVGTVPATIFNV-STLKLIELSNNTFFGS 328 (1057)
Q Consensus 250 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~ 328 (1057)
+|.+++.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|+.|++++|.+.+.
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCC
T ss_conf 88587816577744888898989888665716724--3687898979178557725888884468688998968967784
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHCCCC-CCCEEECCCCCCCCCCCCCC
Q ss_conf 99774567998754872186333447852-23344454001335433454000020234-55578424764579742000
Q 001544 329 LPSSTDVQLPNLEELYLWGNNFSGTLPSF-IFNASNLSKLSLGDNSFSGLIPNTFGNLR-NLKRLRLYNNYLTSPELSFL 406 (1057)
Q Consensus 329 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~ 406 (1057)
+|..+ ..+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+..|..+..++ +|++|++++|.++....
T Consensus 310 ~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~--- 385 (768)
T 3rgz_A 310 VPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL--- 385 (768)
T ss_dssp CCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC---
T ss_pred CCHHH-HCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCC---
T ss_conf 23677-55877667789788525737978872488887884847843762309898632277199862787478767---
Q ss_pred CCCCC--CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 14688--7401454405998666535442344346648986787233326601137457868981388689888800016
Q 001544 407 SSLSN--CKYLEIIALSGNPLNGIIPMSAGNLSHSLEELFMPDCNVSGRIPKEIGNLANLVTLDLGGNKFNGSIPIALGK 484 (1057)
Q Consensus 407 ~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 484 (1057)
..+.. ++.|+.|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|..|..+++|+.|++++|.+++..|..+..
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred HHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCC
T ss_conf 666533247761898977846542487775689-8798989588466854677744998898989788154718978828
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 44466563335657666884434653435287068065203786556763363013677643223665422344352999
Q 001544 485 LQKLQLLNLDDNKLEGSIPDDICGLVELYKLALGDNKLSGQIPACFGNLASLRELWLGPNELISFIPSTFWNIKDIMYVN 564 (1057)
Q Consensus 485 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 564 (1057)
+++|+.|++++|++.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++....|..+..+++|+.|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf 77732999019951375887881699899897539951896876885689999898978943374887770889899898
Q ss_pred ECCCCCCCCCCHHH------------------------------------------------------------------
Q ss_conf 03663369890211------------------------------------------------------------------
Q 001544 565 FSSNFLTGPLPLEI------------------------------------------------------------------ 578 (1057)
Q Consensus 565 l~~N~l~~~~~~~~------------------------------------------------------------------ 578 (1057)
+++|.+++..|..+
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCC
T ss_conf 98884688279578604212232013454211113444322223322210013556323200232110011331004627
Q ss_pred ----CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf ----1353446122445501122543434753464111112112233584334567666301467611487842224756
Q 001544 579 ----ENLKALTTLDFSMNNLSGVIPTTIGGLKGLQYLFLGHNRLQGSIPDSVGDLISLKSLNLSNNNLSGPIPTSLEKLS 654 (1057)
Q Consensus 579 ----~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~ 654 (1057)
..+++|+.|+|++|++++.+|..++.++.|+.|+|++|+++|.+|..++.+++|+.||+++|+++|.+|..+..++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 43340335665797858801555877884141578784868803887896784777899898978802386886775788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 454212688735476999998754675555677556799998999986556
Q 001544 655 DLKELNLSFNKLEGEIPRGGPFVNFSAKSFMGNNLLCGSPNLQVPPCRASI 705 (1057)
Q Consensus 655 ~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~p~~~~~~c~~~~ 705 (1057)
.|++|++++|+++|.+|.+.++.++...+|.||+++||+| .++|....
T Consensus 705 ~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~---l~~C~~~~ 752 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPRCDPSN 752 (768)
T ss_dssp CCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT---SCCCCSCC
T ss_pred CCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCC---CCCCCCCC
T ss_conf 7897879688155608996010248977756983210887---76788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=601.51 Aligned_cols=584 Identities=35% Similarity=0.466 Sum_probs=499.5
Q ss_pred EEEEEECCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEE
Q ss_conf 4775311467555--664346988786884788875566781--32364434333212532348789000-034998938
Q 001544 74 TALNISYLSLTGN--IPRQLGNLSSLEILDLNFNRLSGEIPW--ELGNLAKLEKLLLHNNFLTGTIPFSI-FKLSSLLDL 148 (1057)
Q Consensus 74 ~~l~l~~~~l~g~--~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L 148 (1057)
+.|++.++...+. +|+.++.+++|++|||++|.++|.+|. .++.+++|++|+|++|.+++.+|..+ ..+++|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 80224678688867870332457889989898985787078967872788999898968826774797785638899989
Q ss_pred ECCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 646897989978664--668878862672588465668522211346775685336773226943227789632898304
Q 001544 149 KLSDNNLTGTIPSHN--LGNLSSLQLLDLSDNQLSGSIPSFIFKISSLQALHFGNNRLSGELPANICDNLPFLNFFSVYK 226 (1057)
Q Consensus 149 ~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~l~~ 226 (1057)
+|++|++++..|... +.++++|++|++++|.+.+..+. ..+++|++|++++|++++.+|. +..++.|+.|+++.
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISG 232 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCS
T ss_pred ECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCC
T ss_conf 8979835885871556643589889898978803465784--5478689898928827887711--12699999897948
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCC
Q ss_conf 41234743112388877589855887768944001374787489622133245448333466-64229995647244445
Q 001544 227 NMFYGGISSTLSNCKHLRILDLSFNDLWGDIPKEIGNLTKLKELFLDFNILQGEIPHTVGNL-HNLEYLSLVNNELVGTV 305 (1057)
Q Consensus 227 n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~ 305 (1057)
|.+.+..+..++.+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|++++..
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 8587816577744888898989888665716724--36878989791785577258888844686889989689677842
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHCC
Q ss_conf 864224542109980287334689977456799875487218633344785223344-4540013354334540000202
Q 001544 306 PATIFNVSTLKLIELSNNTFFGSLPSSTDVQLPNLEELYLWGNNFSGTLPSFIFNAS-NLSKLSLGDNSFSGLIPNTFGN 384 (1057)
Q Consensus 306 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~ 384 (1057)
|..+..+++|+.|++++|.+.|.+|...+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+.+..+..+..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 36775587766778978852573797887248888788484784376230989863227719986278747876766653
Q ss_pred --CCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf --345557842476457974200014688740145440599866653544234434664898678723332660113745
Q 001544 385 --LRNLKRLRLYNNYLTSPELSFLSSLSNCKYLEIIALSGNPLNGIIPMSAGNLSHSLEELFMPDCNVSGRIPKEIGNLA 462 (1057)
Q Consensus 385 --l~~L~~L~L~~N~i~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~~~l~~~~p~~~~~l~ 462 (1057)
+++|++|++++|.++... ...+..++.|+.|++++|.+.+..|..+..++ +|+.|++++|.+.+.+|..+..++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKI---PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp STTCCCCEEECCSSEEEEEC---CGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCCCCCCEEECCCCCCCCCC---CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCCCCHHHCCCC
T ss_conf 32477618989778465424---87775689879898958846685467774499-889898978815471897882877
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 78689813886898888000164446656333565766688443465343528706806520378655676336301367
Q 001544 463 NLVTLDLGGNKFNGSIPIALGKLQKLQLLNLDDNKLEGSIPDDICGLVELYKLALGDNKLSGQIPACFGNLASLRELWLG 542 (1057)
Q Consensus 463 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 542 (1057)
+|+.|++++|.+++..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|..+..+++|+.|+++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECC
T ss_conf 73299901995137588788169989989753995189687688568999989897894337488777088989989898
Q ss_pred CCCCCCCCCC----------------------------------------------------------------------
Q ss_conf 7643223665----------------------------------------------------------------------
Q 001544 543 PNELISFIPS---------------------------------------------------------------------- 552 (1057)
Q Consensus 543 ~N~l~~~~~~---------------------------------------------------------------------- 552 (1057)
+|.+....|.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCH
T ss_conf 88468827957860421223201345421111344432222332221001355632320023211001133100462743
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42234435299903663369890211135344612244550112254343475346411111211223358433456766
Q 001544 553 TFWNIKDIMYVNFSSNFLTGPLPLEIENLKALTTLDFSMNNLSGVIPTTIGGLKGLQYLFLGHNRLQGSIPDSVGDLISL 632 (1057)
Q Consensus 553 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 632 (1057)
.|..++.|+.|++++|.+++..|..+..+++|+.|+|++|.+++.+|..|+.++.|+.|+|++|+++|.+|..+..+++|
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 34033566579785880155587788414157878486880388789678477789989897880238688677578878
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 630146761148784222475645421268873-547
Q 001544 633 KSLNLSNNNLSGPIPTSLEKLSDLKELNLSFNK-LEG 668 (1057)
Q Consensus 633 ~~L~ls~N~l~~~~p~~l~~l~~L~~l~l~~N~-l~~ 668 (1057)
+.|++++|+++|.+|.. ..+..+....+.+|+ ++|
T Consensus 707 ~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp SEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred CEEECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCC
T ss_conf 97879688155608996-0102489777569832108
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=542.58 Aligned_cols=593 Identities=22% Similarity=0.219 Sum_probs=493.1
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 77531146755566434698878688478887556678132364434333212532348789000034998938646897
Q 001544 75 ALNISYLSLTGNIPRQLGNLSSLEILDLNFNRLSGEIPWELGNLAKLEKLLLHNNFLTGTIPFSIFKLSSLLDLKLSDNN 154 (1057)
Q Consensus 75 ~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 154 (1057)
.+++++.+++ .+|..+. +++++|+|++|.+++..+..|+.+++|++|+|++|.+++..|..++.+++|++|+|++|+
T Consensus 8 ~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred EEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 4487779805-2641248--887688898997787597887178767588788996485697787406676888899985
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 98997866466887886267258846566852221134677568533677322694322778963289830441234743
Q 001544 155 LTGTIPSHNLGNLSSLQLLDLSDNQLSGSIPSFIFKISSLQALHFGNNRLSGELPANICDNLPFLNFFSVYKNMFYGGIS 234 (1057)
Q Consensus 155 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~ 234 (1057)
++ .+|...|+++++|++|++++|.+++..+..++.+++|++|++++|.+++..|.. +..++.|+.|+++.|.+.+..+
T Consensus 85 l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 85 LS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCH
T ss_pred CC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHH-HCCCCCCCEEECCCCCCCCCCH
T ss_conf 67-568545303888898989899668539667415678888989899524667211-1245567779745884365297
Q ss_pred CCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC---CCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 1123--888775898558877689440013747874896221332454483334---66642299956472444458642
Q 001544 235 STLS--NCKHLRILDLSFNDLWGDIPKEIGNLTKLKELFLDFNILQGEIPHTVG---NLHNLEYLSLVNNELVGTVPATI 309 (1057)
Q Consensus 235 ~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~~~~~l 309 (1057)
..++ .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.....+. ..++|+.|++++|.+.+..+..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
T ss_conf 88624466632179888982565581555322344554305664680567778777531510088745774364686675
Q ss_pred CCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CC
Q ss_conf 24542--10998028733468997745679987548721863334478522334445400133543345---------40
Q 001544 310 FNVST--LKLIELSNNTFFGSLPSSTDVQLPNLEELYLWGNNFSGTLPSFIFNASNLSKLSLGDNSFSG---------LI 378 (1057)
Q Consensus 310 ~~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~---------~~ 378 (1057)
..++. |+.|++++|.+.+.. ...+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+ +.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred HCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCC
T ss_conf 1467677888778788767568-021167410568557788567658656267888557736331321333335545438
Q ss_pred CCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC--CCCCCCCCC-CCCCEEECCCCCCCCCCC
Q ss_conf 00020234555784247645797420001468874014544059986665--354423443-466489867872333266
Q 001544 379 PNTFGNLRNLKRLRLYNNYLTSPELSFLSSLSNCKYLEIIALSGNPLNGI--IPMSAGNLS-HSLEELFMPDCNVSGRIP 455 (1057)
Q Consensus 379 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~-~~L~~L~l~~~~l~~~~p 455 (1057)
...|..+++|++|++++|.++..... .+..+++|+.|++++|.+... ....+..+. ..|+.|++++|.+.+..|
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSN---MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTT---TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHH---HHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECH
T ss_conf 65624677788887989826878855---740656872898879801443235322024556867668899997776775
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEE--ECCCCCCCC
Q ss_conf 011374578689813886898888-00016444665633356576668844346534352870680652--037865567
Q 001544 456 KEIGNLANLVTLDLGGNKFNGSIP-IALGKLQKLQLLNLDDNKLEGSIPDDICGLVELYKLALGDNKLS--GQIPACFGN 532 (1057)
Q Consensus 456 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~ 532 (1057)
.+|..+++|+.|++++|.+++..+ ..|.++++|+.|++++|++....+..|..+++|+.|++++|.+. +..|..|..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCC
T ss_conf 44207788888867787575435755325754612784489975422764550075431011014644225667764555
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--------HHHCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 6336301367764322366542234435299903663369890--------21113534461224455011225434347
Q 001544 533 LASLRELWLGPNELISFIPSTFWNIKDIMYVNFSSNFLTGPLP--------LEIENLKALTTLDFSMNNLSGVIPTTIGG 604 (1057)
Q Consensus 533 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 604 (1057)
+++|+.|++++|.+..+.+..|.++++|+.|++++|.+++..+ ..+..+++|+.|++++|.++.+.+..|.+
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 78789998999987767944634553468885889973000000046774142337998888889999788779777346
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53464111112112233584334567666301467611487842224-7564542126887354769999987
Q 001544 605 LKGLQYLFLGHNRLQGSIPDSVGDLISLKSLNLSNNNLSGPIPTSLE-KLSDLKELNLSFNKLEGEIPRGGPF 676 (1057)
Q Consensus 605 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~-~l~~L~~l~l~~N~l~~~~p~~~~~ 676 (1057)
+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+. .+++|+.+++++|+|.|.++...+|
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~ 631 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSE
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHH
T ss_conf 6675223899997776797683789888889899996870596683011466577983189702577668999
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=524.80 Aligned_cols=573 Identities=22% Similarity=0.194 Sum_probs=441.6
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 83147753114675556643469887868847888755667813236443433321253234878900003499893864
Q 001544 71 RRVTALNISYLSLTGNIPRQLGNLSSLEILDLNFNRLSGEIPWELGNLAKLEKLLLHNNFLTGTIPFSIFKLSSLLDLKL 150 (1057)
Q Consensus 71 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 150 (1057)
.+++.|+++++.+++..+..++++++|++|+|++|.+++..|..++++++|++|+|++|.+++..+..|+.+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88768889899778759788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCC-CCCCCCCEEEEECCCC
Q ss_conf 689798997866466887886267258846566852221134677568533677322694322-7789632898304412
Q 001544 151 SDNNLTGTIPSHNLGNLSSLQLLDLSDNQLSGSIPSFIFKISSLQALHFGNNRLSGELPANIC-DNLPFLNFFSVYKNMF 229 (1057)
Q Consensus 151 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~~l~~L~~L~l~~n~~ 229 (1057)
++|+++ .++...++++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+. ..++.|+.|+++.|.+
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCCC-CCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCC
T ss_conf 899668-5396674156788889898995246672111245567779745884365297886244666321798889825
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC---CCCCCCEEEEECCCCCCCCCCCCCCCCC--CCEEEEECCCCCCC
Q ss_conf 347431123888775898558877689440013---7478748962213324544833346664--22999564724444
Q 001544 230 YGGISSTLSNCKHLRILDLSFNDLWGDIPKEIG---NLTKLKELFLDFNILQGEIPHTVGNLHN--LEYLSLVNNELVGT 304 (1057)
Q Consensus 230 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~ 304 (1057)
.+..+..+..++.|+.|+++++.+.......+. ..++|+.|++++|.+++..|..|.+++. |+.|++++|++.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 65581555322344554305664680567778777531510088745774364686675146767788877878876756
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-----CCC----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 586422454210998028733468997745679987548721863334-----478----52233444540013354334
Q 001544 305 VPATIFNVSTLKLIELSNNTFFGSLPSSTDVQLPNLEELYLWGNNFSG-----TLP----SFIFNASNLSKLSLGDNSFS 375 (1057)
Q Consensus 305 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~l~~l~~L~~L~Ls~N~l~ 375 (1057)
.+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|...+ .+| ..+..+++|+.|++++|.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 80211674105685577885676586-56267888557736331321333335545438656246777888879898268
Q ss_pred CCCCCHHCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 540000202345557842476457974--200014688740145440599866653544234434664898678723332
Q 001544 376 GLIPNTFGNLRNLKRLRLYNNYLTSPE--LSFLSSLSNCKYLEIIALSGNPLNGIIPMSAGNLSHSLEELFMPDCNVSGR 453 (1057)
Q Consensus 376 ~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~~~l~~~ 453 (1057)
+..+..|..+++|++|++++|.+.... ...+..+ ..+.|+.|++++|.+.++.+..+..++ +|+.|++++|.+.+.
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL-AHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQE 420 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG-TTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEE
T ss_pred CCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCC-CCCCCCEEECCCCCCCEECHHHHHCCC-CCCEEECCCCCCCCC
T ss_conf 788557406568728988798014432353220245-568676688999977767754420778-888886778757543
Q ss_pred CC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 66-01137457868981388689888800016444665633356576--6688443465343528706806520378655
Q 001544 454 IP-KEIGNLANLVTLDLGGNKFNGSIPIALGKLQKLQLLNLDDNKLE--GSIPDDICGLVELYKLALGDNKLSGQIPACF 530 (1057)
Q Consensus 454 ~p-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 530 (1057)
+| ..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+. +..|..|..+++|+.|++++|++.+..+..|
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 57553257546127844899754227645500754310110146442256677645557878999899998776794463
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 6763363013677643223665--------42234435299903663369890211135344612244550112254343
Q 001544 531 GNLASLRELWLGPNELISFIPS--------TFWNIKDIMYVNFSSNFLTGPLPLEIENLKALTTLDFSMNNLSGVIPTTI 602 (1057)
Q Consensus 531 ~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 602 (1057)
..+++|+.|++++|.+..+.+. .|.++++|+.|++++|.++.+.+..|.++++|+.|++++|+++.+.+..|
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 45534688858899730000000467741423379988888899997887797773466675223899997776797683
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCC
Q ss_conf 4753464111112112233584334-56766630146761148784
Q 001544 603 GGLKGLQYLFLGHNRLQGSIPDSVG-DLISLKSLNLSNNNLSGPIP 647 (1057)
Q Consensus 603 ~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~ls~N~l~~~~p 647 (1057)
.++++|+.|++++|++++..+..+. .+++|+.|++++|.+....+
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 7898888898999968705966830114665779831897025776
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=496.46 Aligned_cols=528 Identities=21% Similarity=0.182 Sum_probs=318.2
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 753114675556643469887868847888755667813236443433321253234878-9000034998938646897
Q 001544 76 LNISYLSLTGNIPRQLGNLSSLEILDLNFNRLSGEIPWELGNLAKLEKLLLHNNFLTGTI-PFSIFKLSSLLDLKLSDNN 154 (1057)
Q Consensus 76 l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~ 154 (1057)
.+.++++++ .+|. ..+++++|||++|.+++..|..|.++++|++|+|++|...+.+ |..|..+++|++|+|++|.
T Consensus 9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EECCCCCCC-CCCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 982379977-7898---999868888877867832966776621370886789977444197785378778888798995
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH--HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 989978664668878862672588465668522--211346775685336773226943227789632898304412347
Q 001544 155 LTGTIPSHNLGNLSSLQLLDLSDNQLSGSIPSF--IFKISSLQALHFGNNRLSGELPANICDNLPFLNFFSVYKNMFYGG 232 (1057)
Q Consensus 155 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~ 232 (1057)
+++..|. .|.++++|++|+|++|.+++..+.. ++.+++|++|++++|.+++..+...
T Consensus 85 l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-------------------- 143 (844)
T 3j0a_A 85 IYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS-------------------- 143 (844)
T ss_dssp CCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG--------------------
T ss_pred CCCCCHH-HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHH--------------------
T ss_conf 8531976-7157866587017678897340467645566799988898786423256655--------------------
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEEEECCCCCCCCCCCCCCCCC------CCEEEEECCCCCCC
Q ss_conf 43112388877589855887768944001374--78748962213324544833346664------22999564724444
Q 001544 233 ISSTLSNCKHLRILDLSFNDLWGDIPKEIGNL--TKLKELFLDFNILQGEIPHTVGNLHN------LEYLSLVNNELVGT 304 (1057)
Q Consensus 233 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~------L~~L~L~~n~l~~~ 304 (1057)
|+++++|++|++++|.+++..+..+..+ ++|+.|+++.|.+.+..|..++.+.+ |+.|++++|.+.+.
T Consensus 144 ----~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 144 ----FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp ----GGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred ----HHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHH
T ss_conf ----7638898989898984776678875355677503578978866655455332237722357400796578868656
Q ss_pred CCCCCCC---CCCCCEEEECCCCCCC--------CCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5864224---5421099802873346--------899774567--99875487218633344785223344454001335
Q 001544 305 VPATIFN---VSTLKLIELSNNTFFG--------SLPSSTDVQ--LPNLEELYLWGNNFSGTLPSFIFNASNLSKLSLGD 371 (1057)
Q Consensus 305 ~~~~l~~---l~~L~~L~L~~n~l~~--------~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 371 (1057)
.+..+.. ..+++.+.++.+.... ......+.+ .++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 220 ~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299 (844)
T ss_dssp TTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES
T ss_pred HHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 77888764274410011212122346644456688985565255547861898979945515863452589999998979
Q ss_pred CCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 43345400002023455578424764579742000146887401454405998666535442344346648986787233
Q 001544 372 NSFSGLIPNTFGNLRNLKRLRLYNNYLTSPELSFLSSLSNCKYLEIIALSGNPLNGIIPMSAGNLSHSLEELFMPDCNVS 451 (1057)
Q Consensus 372 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~~~l~ 451 (1057)
|.+.+..+..|..+++|++|++++|.++..... .+..++. |+.|++++|.+.
T Consensus 300 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~-------------------------L~~L~L~~N~i~ 351 (844)
T 3j0a_A 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSS---NFYGLPK-------------------------VAYIDLQKNHIA 351 (844)
T ss_dssp CCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC---SCSSCTT-------------------------CCEEECCSCCCC
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH---HHCCCCC-------------------------CCEEECCCCCCC
T ss_conf 818987968836888999898989978851878---8468999-------------------------998989899877
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCC-CCC
Q ss_conf 3266011374578689813886898888000164446656333565766688443465343528706806520378-655
Q 001544 452 GRIPKEIGNLANLVTLDLGGNKFNGSIPIALGKLQKLQLLNLDDNKLEGSIPDDICGLVELYKLALGDNKLSGQIP-ACF 530 (1057)
Q Consensus 452 ~~~p~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~ 530 (1057)
+..+..|..+++|+.|++++|.+++.. .+++|+.|++++|++... |.. ...++.|++++|++.+... ..+
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHH
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCC-----CCCCCCHHCCCCCCCCCC-CCC---CCCCCEEECCCCCCCCCCHHHHH
T ss_conf 628666137888999889899778616-----889823200589972314-554---55431221456753457556665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCC-----CCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 6763363013677643223665-4223443529990366336-----989021113534461224455011225434347
Q 001544 531 GNLASLRELWLGPNELISFIPS-TFWNIKDIMYVNFSSNFLT-----GPLPLEIENLKALTTLDFSMNNLSGVIPTTIGG 604 (1057)
Q Consensus 531 ~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 604 (1057)
..+++|+.|++++|++....+. .+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|.+++..|..|.+
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 12776666667787125555433356687310024777736441013553555447553657778898565539557045
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5346411111211223358433456766630146761148784222475645421268873547699999
Q 001544 605 LKGLQYLFLGHNRLQGSIPDSVGDLISLKSLNLSNNNLSGPIPTSLEKLSDLKELNLSFNKLEGEIPRGG 674 (1057)
Q Consensus 605 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~~~ 674 (1057)
+++|+.|+|++|++++..+..+. ++|+.|++++|++++..|..+ ++|+.+++++|++.|.++..+
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELST 567 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCS
T ss_pred HHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCCCHH
T ss_conf 01221569999978745710110--045588898884788896683---776889931997025366189
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=488.76 Aligned_cols=541 Identities=23% Similarity=0.227 Sum_probs=381.2
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 77531146755566434698878688478887556678132364434333212532348789000034998938646897
Q 001544 75 ALNISYLSLTGNIPRQLGNLSSLEILDLNFNRLSGEIPWELGNLAKLEKLLLHNNFLTGTIPFSIFKLSSLLDLKLSDNN 154 (1057)
Q Consensus 75 ~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 154 (1057)
.++.++.+++ .+|..+. .++++|+|++|.+++..|..|+.+++|++|+|++|++++..|..|+.+++|++|+|++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 3777779806-2867789--867589815873471796672567665289788983552485113684336764488985
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 98997866466887886267258846566852221134677568533677322694322778963289830441234743
Q 001544 155 LTGTIPSHNLGNLSSLQLLDLSDNQLSGSIPSFIFKISSLQALHFGNNRLSGELPANICDNLPFLNFFSVYKNMFYGGIS 234 (1057)
Q Consensus 155 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~ 234 (1057)
+++..|. .++++++|++|++++|.+++..+..++.+++|++|++++|++++.....+
T Consensus 93 l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------------------- 149 (606)
T 3t6q_A 93 LIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG---------------------- 149 (606)
T ss_dssp CSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT----------------------
T ss_pred CCCCCHH-HHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCC----------------------
T ss_conf 6545865-52344215376521267665781012237822389887983411476545----------------------
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC--EEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 1123888775898558877689440013747874--89622133245448333466642299956472444458642245
Q 001544 235 STLSNCKHLRILDLSFNDLWGDIPKEIGNLTKLK--ELFLDFNILQGEIPHTVGNLHNLEYLSLVNNELVGTVPATIFNV 312 (1057)
Q Consensus 235 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 312 (1057)
..+++|++|++++|.+++..+..+..+++|+ .|++++|.+++..|..+.. .+|+.|++++|. ..+..+..+
T Consensus 150 ---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l 222 (606)
T 3t6q_A 150 ---FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGL 222 (606)
T ss_dssp ---CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHT
T ss_pred ---CCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHC
T ss_conf ---6876568777656844554965633221564038966798147548667300-100135567726---677776513
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEE
Q ss_conf 42109980287334689977456799875487218633344785223344454001335433454000020234555784
Q 001544 313 STLKLIELSNNTFFGSLPSSTDVQLPNLEELYLWGNNFSGTLPSFIFNASNLSKLSLGDNSFSGLIPNTFGNLRNLKRLR 392 (1057)
Q Consensus 313 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 392 (1057)
..+....+..+.+. .+....+..+.+ ..+.. .+|+.|++++|.+.+..+..|..+++|++|+
T Consensus 223 ~~~~l~~l~~~~~~------------~~~~~~i~~~~~-----~~l~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 223 KNSTIQSLWLGTFE------------DMDDEDISPAVF-----EGLCE-MSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp TTCEEEEEECCCCT------------TSCCCCCCGGGG-----GGGGG-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred CCCCHHHEECHHHC------------CCCCCCCCHHHH-----CHHHC-CCEEEEEEECCCCCCCCHHHHCCCCCCCEEE
T ss_conf 35644220020110------------264122686674-----30320-7505999445765855777744566788895
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCC
Q ss_conf 2476457974200014688740145440599866653544234434664898678723332660-113745786898138
Q 001544 393 LYNNYLTSPELSFLSSLSNCKYLEIIALSGNPLNGIIPMSAGNLSHSLEELFMPDCNVSGRIPK-EIGNLANLVTLDLGG 471 (1057)
Q Consensus 393 L~~N~i~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~~~l~~~~p~-~~~~l~~L~~L~L~~ 471 (1057)
+++|.++.++ ..+..++.|+.|++++|.+.+..+..+..++ +|+.|++++|.+.+.+|. .+..+++|+.|++++
T Consensus 285 l~~n~l~~lp----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 285 LTATHLSELP----SGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp CTTSCCSCCC----SSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred CCCCCCCCCC----HHHCCCCCCCEEECCCCCCCCCCHHHHHCCC-CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 6288267778----2141654688897716876867602330157-6898889899744434624550667589887889
Q ss_pred CCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 8689888--80001644466563335657666884434653435287068065203786-55676336301367764322
Q 001544 472 NKFNGSI--PIALGKLQKLQLLNLDDNKLEGSIPDDICGLVELYKLALGDNKLSGQIPA-CFGNLASLRELWLGPNELIS 548 (1057)
Q Consensus 472 n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~ 548 (1057)
|.+++.. +..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|++.+..+. .+..+++|+.|++++|.+..
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred CCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 96664567522105678889898989967757888734774577687888867775652124176558889898985577
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCC---CCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 3665422344352999036633698---9021113534461224455011225434347534641111121122335843
Q 001544 549 FIPSTFWNIKDIMYVNFSSNFLTGP---LPLEIENLKALTTLDFSMNNLSGVIPTTIGGLKGLQYLFLGHNRLQGSIPDS 625 (1057)
Q Consensus 549 ~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 625 (1057)
..+..|..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred CCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 68778737887888989899888543454312404887668879999667068646326567888989898068689668
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34567666301467611487842224756454212688735476999
Q 001544 626 VGDLISLKSLNLSNNNLSGPIPTSLEKLSDLKELNLSFNKLEGEIPR 672 (1057)
Q Consensus 626 ~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~ 672 (1057)
+..++.| .|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred HCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 4756651-898768941426876625677878896779986166775
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=480.54 Aligned_cols=525 Identities=18% Similarity=0.214 Sum_probs=277.1
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCC-------CCCCCCCCCCCCC---CEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 10199999998731359998666-------8978999998654---1038417998314775311467555664346988
Q 001544 26 DIDQDALLALKDHITYDPTNFFA-------KNWLTNSTMVCNW---TGVTCDINQRRVTALNISYLSLTGNIPRQLGNLS 95 (1057)
Q Consensus 26 ~~~~~~l~~~k~~~~~~~~~~~~-------~~w~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~ 95 (1057)
..|++||.+++.++.. +..... .+|.. +.+||.| .||+|+.. ++|++|+|++++++|.+|+.+++++
T Consensus 29 ~~d~~aL~~~~~~~~~-~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 29 IKDYLALKEIWDALNG-KNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHTTG-GGCCCCC------CCCCC-SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEECCC-CCEEEEEECCCCCCCCCCHHHHCCC
T ss_conf 7889999999997589-974547767765788777-998000147798487678-9788998427665772885785684
Q ss_pred CCCEEECCCCCC------CC------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCC
Q ss_conf 786884788875------56------678132364434333212532348789000034-99893864689798997866
Q 001544 96 SLEILDLNFNRL------SG------EIPWELGNLAKLEKLLLHNNFLTGTIPFSIFKL-SSLLDLKLSDNNLTGTIPSH 162 (1057)
Q Consensus 96 ~L~~L~L~~n~l------~~------~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~ 162 (1057)
+|++|+|++|.+ .+ .+|... +..|+ ++++.|.+.+.+|..+..+ ..+..+++....+.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~------ 176 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK------ 176 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC------
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC------
T ss_conf 51189876885123774334532356733888--88887-6577755411706667788777764275546541------
Q ss_pred CCCCCCCCCEEECC--CCCCCCCCCHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCCCCCC-
Q ss_conf 46688788626725--8846566852221134677568533677322-6943227789632898304412347431123-
Q 001544 163 NLGNLSSLQLLDLS--DNQLSGSIPSFIFKISSLQALHFGNNRLSGE-LPANICDNLPFLNFFSVYKNMFYGGISSTLS- 238 (1057)
Q Consensus 163 ~~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~L~~L~l~~n~~~~~~~~~l~- 238 (1057)
......++.+.+. .|.+++ +|..++.+++|++|+|++|++++. ++..... . ..+...+.+|..++
T Consensus 177 -~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~---~------~~~~~~~~ip~~l~~ 245 (636)
T 4eco_A 177 -KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN---E------NSEYAQQYKTEDLKW 245 (636)
T ss_dssp -CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC---T------TSHHHHHHTTSCCCG
T ss_pred -CCCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCC---C------CCCHHCCCCCHHHHH
T ss_conf -013344213001013677750-78777256478789886882366423221222---2------210010248632200
Q ss_pred -CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCC-CCCCCCCCC------CCCCEEEEECCCCCCCCCC--
Q ss_conf -88877589855887768944001374787489622133-245-448333466------6422999564724444586--
Q 001544 239 -NCKHLRILDLSFNDLWGDIPKEIGNLTKLKELFLDFNI-LQG-EIPHTVGNL------HNLEYLSLVNNELVGTVPA-- 307 (1057)
Q Consensus 239 -~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~~~-- 307 (1057)
++++|++|++++|.+.+.+|..++.+++|++|++++|. +++ .+|..++.+ ++|++|++++|+++ .+|.
T Consensus 246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~ 324 (636)
T 4eco_A 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET 324 (636)
T ss_dssp GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred CCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHH
T ss_conf 4468788898048857762838883499978897847988766533578875430465788888989799377-667655
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 42245421099802873346899774567998754872186333447852233444540013354334540000202345
Q 001544 308 TIFNVSTLKLIELSNNTFFGSLPSSTDVQLPNLEELYLWGNNFSGTLPSFIFNASNLSKLSLGDNSFSGLIPNTFGNLRN 387 (1057)
Q Consensus 308 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 387 (1057)
.+..+ ++|++|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..+..+++
T Consensus 325 ~l~~l-------------------------~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 325 SLQKM-------------------------KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp HHTTC-------------------------TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred HHCCC-------------------------CCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCC
T ss_conf 54257-------------------------888989690880705166-6478898898989899403-03375651023
Q ss_pred -CCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-------
Q ss_conf -557842476457974200014688740145440599866653544234434664898678723332660113-------
Q 001544 388 -LKRLRLYNNYLTSPELSFLSSLSNCKYLEIIALSGNPLNGIIPMSAGNLSHSLEELFMPDCNVSGRIPKEIG------- 459 (1057)
Q Consensus 388 -L~~L~L~~N~i~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~~~l~~~~p~~~~------- 459 (1057)
|++|++++|.++.++. .+..+. ..+|+.|++++|.+.+..|..|.
T Consensus 378 ~L~~L~Ls~N~l~~lp~----~~~~~~-----------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 378 QVENLSFAHNKLKYIPN----IFDAKS-----------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp TCCEEECCSSCCSSCCS----CCCTTC-----------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCEEECCCCCCCCCCH----HHHHCC-----------------------CCCCCEEECCCCCCCCCCHHHHCCCCCCCC
T ss_conf 68689852982754466----553334-----------------------576688977488578865244200220112
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCC
Q ss_conf 74578689813886898888000164446656333565766688443465343528706806520378655676336301
Q 001544 460 NLANLVTLDLGGNKFNGSIPIALGKLQKLQLLNLDDNKLEGSIPDDICGLVELYKLALGDNKLSGQIPACFGNLASLREL 539 (1057)
Q Consensus 460 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 539 (1057)
.+++|+.|++++|.++...+..+..+++|+.|++++|++..+.+..+.... ..+.++++|+.|
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-----------------~~~~~l~~L~~L 493 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-----------------ENFKNTYLLTSI 493 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-----------------EECTTGGGCCEE
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC-----------------CCCCCCCCCCEE
T ss_conf 589888897727966867878871589889898979978873978840440-----------------012214773389
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 3677643223665422--34435299903663369890211135344612244550112254343475346411111211
Q 001544 540 WLGPNELISFIPSTFW--NIKDIMYVNFSSNFLTGPLPLEIENLKALTTLDFSMNNLSGVIPTTIGGLKGLQYLFLGHNR 617 (1057)
Q Consensus 540 ~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 617 (1057)
++++|++..+ |..+. .+++|+.|++++|.+++ .|..+..+++|+.|++++|+ ++++|+
T Consensus 494 ~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~ 553 (636)
T 4eco_A 494 DLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------DAQGNR 553 (636)
T ss_dssp ECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------------CTTCCB
T ss_pred ECCCCCCCCC-CHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCC------------------CCCCCC
T ss_conf 8969938816-854534458876989898998877-68235308887878898886------------------656673
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 223358433456766630146761148784222475645421268873547
Q 001544 618 LQGSIPDSVGDLISLKSLNLSNNNLSGPIPTSLEKLSDLKELNLSFNKLEG 668 (1057)
Q Consensus 618 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~ 668 (1057)
+.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++.+
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHH--CCCCEEECCCCCCCC
T ss_conf 1212737785699878898989947-70597683--867899876998763
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=479.21 Aligned_cols=539 Identities=21% Similarity=0.197 Sum_probs=406.1
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 47753114675556643469887868847888755667813236443433321253234878900003499893864689
Q 001544 74 TALNISYLSLTGNIPRQLGNLSSLEILDLNFNRLSGEIPWELGNLAKLEKLLLHNNFLTGTIPFSIFKLSSLLDLKLSDN 153 (1057)
Q Consensus 74 ~~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 153 (1057)
..+++++.+++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCC
T ss_conf 70574688845-1898888--87678878889757737545557766748868877366439777306010688678798
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCCC-CCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 79899786646688788626725884656685222113467756853367732-26943227789632898304412347
Q 001544 154 NLTGTIPSHNLGNLSSLQLLDLSDNQLSGSIPSFIFKISSLQALHFGNNRLSG-ELPANICDNLPFLNFFSVYKNMFYGG 232 (1057)
Q Consensus 154 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~~l~~L~~L~l~~n~~~~~ 232 (1057)
++++..|. .++++++|++|++++|.+.+..+..++.+++|++|++++|.+++ .+|.
T Consensus 91 ~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~---------------------- 147 (606)
T 3vq2_A 91 PIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA---------------------- 147 (606)
T ss_dssp CCCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG----------------------
T ss_pred CCCCCCHH-HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHH----------------------
T ss_conf 56304852-2078653788870377555445113489887798968788523253068----------------------
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC----EEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCCCC
Q ss_conf 431123888775898558877689440013747874----8962213324544833346664229995647244-44586
Q 001544 233 ISSTLSNCKHLRILDLSFNDLWGDIPKEIGNLTKLK----ELFLDFNILQGEIPHTVGNLHNLEYLSLVNNELV-GTVPA 307 (1057)
Q Consensus 233 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~ 307 (1057)
.++++++|++|++++|.+++..+..++.+.+|+ +|++++|.+++..+..+... +|+.|++++|.+. +..+.
T Consensus 148 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~ 223 (606)
T 3vq2_A 148 ---YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT 223 (606)
T ss_dssp ---GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHH
T ss_pred ---HHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHH
T ss_conf ---673267777887668853105733412120342002430046897532571105676-0433524678561667788
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHCCCC
Q ss_conf 42245421099802873346899774567998754872186333447852233444540013-35433454000020234
Q 001544 308 TIFNVSTLKLIELSNNTFFGSLPSSTDVQLPNLEELYLWGNNFSGTLPSFIFNASNLSKLSL-GDNSFSGLIPNTFGNLR 386 (1057)
Q Consensus 308 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-s~N~l~~~~~~~~~~l~ 386 (1057)
.+.+++.|+.+.+..+.+.+... +..+ ....+..+..+ .++.+++ ..|.+.+..+. +..++
T Consensus 224 ~~~~l~~L~~l~l~~~~~~~~~~---------l~~~-------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~ 285 (606)
T 3vq2_A 224 CLQNLAGLHVHRLILGEFKDERN---------LEIF-------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLA 285 (606)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCC---------CSCC-------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGT
T ss_pred HHCCCCCCCCCCCCCCCCCCCCC---------CCCC-------CHHHHHHHHHC-CHHHEECCCCCCCCCCCCC-CCCCC
T ss_conf 86026656523141111036774---------1026-------81776666543-4745012366555543222-35488
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 55578424764579742000146887401454405998666535442344346648986787233326601137457868
Q 001544 387 NLKRLRLYNNYLTSPELSFLSSLSNCKYLEIIALSGNPLNGIIPMSAGNLSHSLEELFMPDCNVSGRIPKEIGNLANLVT 466 (1057)
Q Consensus 387 ~L~~L~L~~N~i~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~~~l~~~~p~~~~~l~~L~~ 466 (1057)
+|+.|++++|.++.++ .+..++.|+.|++++|.+. .+| .+ ..+.|+.|++++|...+.. .+..+++|+.
T Consensus 286 ~L~~L~l~~~~~~~l~-----~l~~~~~L~~L~l~~n~l~-~lp-~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 354 (606)
T 3vq2_A 286 NVSAMSLAGVSIKYLE-----DVPKHFKWQSLSIIRCQLK-QFP-TL--DLPFLKSLTLTMNKGSISF--KKVALPSLSY 354 (606)
T ss_dssp TCSEEEEESCCCCCCC-----CCCTTCCCSEEEEESCCCS-SCC-CC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCE
T ss_pred CCCEEEECCCCCHHHH-----HCCCCCCCCEEECCCCCCC-CCC-CC--CCCCCCEEECCCCCCCCCH--HHCCCCCCCE
T ss_conf 7898771476604435-----4334011778976466676-546-67--8875564454478685310--0024898887
Q ss_pred EECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCC-CCCCCCCCCCCCCCCC
Q ss_conf 98138868988--88000164446656333565766688443465343528706806520378-6556763363013677
Q 001544 467 LDLGGNKFNGS--IPIALGKLQKLQLLNLDDNKLEGSIPDDICGLVELYKLALGDNKLSGQIP-ACFGNLASLRELWLGP 543 (1057)
Q Consensus 467 L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~ 543 (1057)
|++++|.+++. .+..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|++.+..+ ..|..+++|+.|++++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 977587368775201221467755486788995300-0554068888896589887058753764564621378898968
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 64322366542234435299903663369-89021113534461224455011225434347534641111121122335
Q 001544 544 NELISFIPSTFWNIKDIMYVNFSSNFLTG-PLPLEIENLKALTTLDFSMNNLSGVIPTTIGGLKGLQYLFLGHNRLQGSI 622 (1057)
Q Consensus 544 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 622 (1057)
|.+....+..|..+++|+.|++++|.+++ ..|..+..+++|+.|++++|.+++..|..|.++++|+.|++++|++++..
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 97874335553477878989898983798546776045788998989888577648656154646898989899578748
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 84334567666301467611487842224756-4542126887354769999
Q 001544 623 PDSVGDLISLKSLNLSNNNLSGPIPTSLEKLS-DLKELNLSFNKLEGEIPRG 673 (1057)
Q Consensus 623 ~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~-~L~~l~l~~N~l~~~~p~~ 673 (1057)
|..+..+++|+.|++++|+++ .+|..+..++ +|+++++++|++.|.++..
T Consensus 514 ~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp GGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred HHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 777068876898889898376-668767521021748876289866477648
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=477.09 Aligned_cols=524 Identities=24% Similarity=0.260 Sum_probs=356.8
Q ss_pred CCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 65410384179983147753114675556643469887868847888755667-81323644343332125323487890
Q 001544 59 CNWTGVTCDINQRRVTALNISYLSLTGNIPRQLGNLSSLEILDLNFNRLSGEI-PWELGNLAKLEKLLLHNNFLTGTIPF 137 (1057)
Q Consensus 59 c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~ 137 (1057)
|+|..|.+ -..+++.|+|+++.+++..+..++.+++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 99777898--9998688888778678329667766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 000349989386468979899786-646688788626725884656685-222113467756853367732269432277
Q 001544 138 SIFKLSSLLDLKLSDNNLTGTIPS-HNLGNLSSLQLLDLSDNQLSGSIP-SFIFKISSLQALHFGNNRLSGELPANICDN 215 (1057)
Q Consensus 138 ~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~ 215 (1057)
.|+.+++|++|+|++|.+++.++. ..+.++++|++|++++|.+.+..+ ..++.+++|++|++++|.+++..+..+. .
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-P 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-H
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCC-C
T ss_conf 715786658701767889734046764556679998889878642325665576388989898989847766788753-5
Q ss_pred C--CCCCEEEEECCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCEEEEECC---------
Q ss_conf 8--96328983044123474311238887------7589855887768944001374---78748962213---------
Q 001544 216 L--PFLNFFSVYKNMFYGGISSTLSNCKH------LRILDLSFNDLWGDIPKEIGNL---TKLKELFLDFN--------- 275 (1057)
Q Consensus 216 l--~~L~~L~l~~n~~~~~~~~~l~~~~~------L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n--------- 275 (1057)
+ +.|+.|+++.|.+.+..+..++.+.. |+.|++++|.+++..+..+... ++++.+.++.+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 56775035789788666554553322377223574007965788686567788876427441001121212234664445
Q ss_pred CCCCCCCCCCCCC--CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 3245448333466--64229995647244445864224542109980287334689977456799875487218633344
Q 001544 276 ILQGEIPHTVGNL--HNLEYLSLVNNELVGTVPATIFNVSTLKLIELSNNTFFGSLPSSTDVQLPNLEELYLWGNNFSGT 353 (1057)
Q Consensus 276 ~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 353 (1057)
.+.+.....|.++ ++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCC
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCCCCCCC
T ss_conf 668898556525554786189897994551586345258999999897981898796-8836888999898989978851
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 78522334445400133543345400002023455578424764579742000146887401454405998666535442
Q 001544 354 LPSFIFNASNLSKLSLGDNSFSGLIPNTFGNLRNLKRLRLYNNYLTSPELSFLSSLSNCKYLEIIALSGNPLNGIIPMSA 433 (1057)
Q Consensus 354 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 433 (1057)
.+..+..+++|+.|++++|.+....+..|..+++|++|++++|.++.++ .+++|+.+++++|.
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~L~~L~l~~N~--------- 392 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH--------FIPSIPDIFLSGNK--------- 392 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS--------SCCSCSEEEEESCC---------
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC--------CCCCCCHHCCCCCC---------
T ss_conf 8788468999998989899877628666137888999889899778616--------88982320058997---------
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCC
Q ss_conf 34434664898678723332660113745786898138868988880-001644466563335657666884-4346534
Q 001544 434 GNLSHSLEELFMPDCNVSGRIPKEIGNLANLVTLDLGGNKFNGSIPI-ALGKLQKLQLLNLDDNKLEGSIPD-DICGLVE 511 (1057)
Q Consensus 434 ~~l~~~L~~L~l~~~~l~~~~p~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 511 (1057)
+. .+|.. ..+++.|++++|.+++.... .+..+++|+.|++++|++.+..+. .+..+++
T Consensus 393 ----------------l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 452 (844)
T 3j0a_A 393 ----------------LV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452 (844)
T ss_dssp ----------------CC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT
T ss_pred ----------------CC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf ----------------23-14554---55431221456753457556665127766666677871255554333566873
Q ss_pred CCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEECCCC
Q ss_conf 35287068065203786556763363013677643223665422344352999036633698902111353446122445
Q 001544 512 LYKLALGDNKLSGQIPACFGNLASLRELWLGPNELISFIPSTFWNIKDIMYVNFSSNFLTGPLPLEIENLKALTTLDFSM 591 (1057)
Q Consensus 512 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 591 (1057)
|+.|++++|.+....+. ...+..|.++++|+.|++++|.+++..+..|..+++|+.|+|++
T Consensus 453 L~~L~Ls~N~l~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 453 LEQLFLGENMLQLAWET-------------------ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp CCBCEEESCCCSSSCCS-------------------CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred CCCCCCCCCCCCCCCCC-------------------CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCC
T ss_conf 10024777736441013-------------------55355544755365777889856553955704501221569999
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 50112254343475346411111211223358433456766630146761148784
Q 001544 592 NNLSGVIPTTIGGLKGLQYLFLGHNRLQGSIPDSVGDLISLKSLNLSNNNLSGPIP 647 (1057)
Q Consensus 592 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 647 (1057)
|+|+++.+..+. ++|+.|++++|++++..|..|. +|+.|++++|.+....+
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred CCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCC
T ss_conf 978745710110--0455888988847888966837---76889931997025366
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=468.39 Aligned_cols=547 Identities=20% Similarity=0.224 Sum_probs=302.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC----CCC--CCC------------CEEEECCCCCCEEEEEEECCCCC
Q ss_conf 999101999999987313599986668978999----998--654------------10384179983147753114675
Q 001544 23 TSIDIDQDALLALKDHITYDPTNFFAKNWLTNS----TMV--CNW------------TGVTCDINQRRVTALNISYLSLT 84 (1057)
Q Consensus 23 ~~~~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~----~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~l~ 84 (1057)
.+...|++||++||+++. +| +|..++ .++ |+| .||+|+. .++|+.|+|++++++
T Consensus 265 ~~~~~d~~ALl~~k~~l~-~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD-GK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT-GG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred CCCHHHHHHHHHHHHHCC-CC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCC
T ss_conf 463178999999999737-99------9886898653367764034666545335768428369-997989987247899
Q ss_pred CCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCC----CCCC--EEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 556643469887868847-8887556678132364----4343--3321253-234878900003499893864689798
Q 001544 85 GNIPRQLGNLSSLEILDL-NFNRLSGEIPWELGNL----AKLE--KLLLHNN-FLTGTIPFSIFKLSSLLDLKLSDNNLT 156 (1057)
Q Consensus 85 g~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l----~~L~--~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~ 156 (1057)
|.+|+.+++|++|++|+| ++|.++|..|...... ...+ .+..... .+....+. ..+..+....+..+...
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~--~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR--LNLSDLLQDAINRNPEM 414 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG--GGSCHHHHHHHHTCTTS
T ss_pred CCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCC
T ss_conf 9485577415556284301256335666422234454411567888777666654203751--11567878776507332
Q ss_pred CCCCCCCCCCCCCCCEEECCC--CCCCCCCCHHHHCCCCCCEEEEECCCCCC-CCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 997866466887886267258--84656685222113467756853367732-269432277896328983044123474
Q 001544 157 GTIPSHNLGNLSSLQLLDLSD--NQLSGSIPSFIFKISSLQALHFGNNRLSG-ELPANICDNLPFLNFFSVYKNMFYGGI 233 (1057)
Q Consensus 157 ~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~~l~~L~~L~l~~n~~~~~~ 233 (1057)
..+ .......++.+.+.. |.+++ +|..++++++|+.|+|++|++++ .+|..... ...|...+.+
T Consensus 415 ~~i---~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~---------~s~n~~~g~i 481 (876)
T 4ecn_A 415 KPI---KKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED---------ANSDYAKQYE 481 (876)
T ss_dssp CCC---CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC---------TTSHHHHHHT
T ss_pred CCC---CCCCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC---------CCCCCCCCCC
T ss_conf 432---2235442312040566676152-11887569998789796886788746532233---------2222224458
Q ss_pred CCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCC-CCCCCCCCCC-------CCCEEEEECCCCC
Q ss_conf 31123--88877589855887768944001374787489622133-245-4483334666-------4229995647244
Q 001544 234 SSTLS--NCKHLRILDLSFNDLWGDIPKEIGNLTKLKELFLDFNI-LQG-EIPHTVGNLH-------NLEYLSLVNNELV 302 (1057)
Q Consensus 234 ~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~ 302 (1057)
|..++ ++++|+.|++++|.+.+.+|..+..+++|++|++++|. +++ .+|..+++++ +|+.|++++|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 74440255999778987189887527387737999899989689876566461778752330155688319982289477
Q ss_pred CCCCC--CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf 44586--42245421099802873346899774567998754872186333447852233444-5400133543345400
Q 001544 303 GTVPA--TIFNVSTLKLIELSNNTFFGSLPSSTDVQLPNLEELYLWGNNFSGTLPSFIFNASN-LSKLSLGDNSFSGLIP 379 (1057)
Q Consensus 303 ~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~N~l~~~~~ 379 (1057)
.+|. .+.++++|+.|+|++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred -CCCCHHHHHCCCCCCEEECCCCCCC-CCH--HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCC
T ss_conf -6187235515898898989799825-621--2247985007987187125-035877525114989998499787-476
Q ss_pred CHHCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 00202345--5578424764579742000146887401454405998666535442344346648986787233326601
Q 001544 380 NTFGNLRN--LKRLRLYNNYLTSPELSFLSSLSNCKYLEIIALSGNPLNGIIPMSAGNLSHSLEELFMPDCNVSGRIPKE 457 (1057)
Q Consensus 380 ~~~~~l~~--L~~L~L~~N~i~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~~~l~~~~p~~ 457 (1057)
..+..++. |+.|++++|.++.........+ .
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l-----------------------------------------------~ 668 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM-----------------------------------------------D 668 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT-----------------------------------------------T
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCCCCHHHH-----------------------------------------------C
T ss_conf 44522556777889770884788643200000-----------------------------------------------0
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-------CCCCEEEECCEEEEECCCCCC
Q ss_conf 1374578689813886898888000164446656333565766688443465-------343528706806520378655
Q 001544 458 IGNLANLVTLDLGGNKFNGSIPIALGKLQKLQLLNLDDNKLEGSIPDDICGL-------VELYKLALGDNKLSGQIPACF 530 (1057)
Q Consensus 458 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~l~~N~l~~~~~~~~ 530 (1057)
...+++|+.|++++|.++...+..+..+++|+.|+|++|++..+.+..+... ++|+.|++++|++. .+|..+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l 747 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF 747 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGG
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHH
T ss_conf 1357976889831996886597887138988999898996885496784555334321487158988899786-652776
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6--76336301367764322366542234435299903663369890211135344612244550112254343475346
Q 001544 531 G--NLASLRELWLGPNELISFIPSTFWNIKDIMYVNFSSNFLTGPLPLEIENLKALTTLDFSMNNLSGVIPTTIGGLKGL 608 (1057)
Q Consensus 531 ~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 608 (1057)
. .+++|+.|++++|.+.. .|..+..+++|+.|++++|. ++++|.+.+.+|..|..+++|
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSC
T ss_pred HHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCC------------------CCCCCCCCCCCHHHHHCCCCC
T ss_conf 24427986989908997876-10566159998899887997------------------766563244486888369987
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 411111211223358433456766630146761148784222475645421268873547
Q 001544 609 QYLFLGHNRLQGSIPDSVGDLISLKSLNLSNNNLSGPIPTSLEKLSDLKELNLSFNKLEG 668 (1057)
Q Consensus 609 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~ 668 (1057)
+.|+|++|++ +.+|..+. ++|+.|++++|++....+..+.....+..+.+.+|++..
T Consensus 809 ~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 809 IQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CEEECCCCCC-CCCCHHHC--CCCCEEECCCCCCCCCCHHHCCCCCCCHHEEECCCCCCC
T ss_conf 8898879978-74087662--877889997998881176772565423110346888655
Done!