Query 001547
Match_columns 1056
No_of_seqs 906 out of 5569
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-68 2.4E-73 683.2 45.8 348 520-972 264-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.4E-56 3E-61 572.0 42.2 519 342-972 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.5E-38 5.4E-43 335.9 7.0 377 542-975 79-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 2E-36 4.3E-41 321.4 6.3 365 343-766 79-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.4E-38 5.3E-43 321.9 -13.2 475 342-944 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.1E-37 2.3E-42 317.2 -11.0 457 337-920 63-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.1E-32 2.4E-37 309.5 -5.5 402 337-795 16-420 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 3.9E-32 8.5E-37 290.1 -1.7 391 444-948 9-408 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 1.2E-31 2.7E-36 286.4 -3.1 362 515-941 6-372 (1255)
10 KOG0618 Serine/threonine phosp 100.0 1.5E-31 3.2E-36 300.4 -3.3 285 344-699 158-443 (1081)
11 PLN03210 Resistant to P. syrin 99.9 2.7E-22 5.8E-27 255.8 27.1 340 511-918 553-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.5E-22 5.4E-27 256.1 26.8 340 533-941 550-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 2.1E-25 4.6E-30 227.9 -3.2 420 501-941 52-498 (498)
14 KOG4237 Extracellular matrix p 99.9 2.9E-25 6.3E-30 226.9 -2.2 403 482-917 60-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.1E-20 2.4E-25 221.9 16.5 264 542-927 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.4E-20 9.4E-25 217.0 17.3 268 516-906 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.8E-18 3.9E-23 205.3 11.6 119 541-675 178-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.1E-18 4.4E-23 204.8 12.0 159 518-699 180-338 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.8E-23 193.7 -0.9 58 569-626 2-63 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-18 5.1E-23 191.5 1.1 58 545-603 2-64 (319)
21 KOG0617 Ras suppressor protein 99.6 1.6E-17 3.5E-22 150.6 -4.1 144 729-930 51-195 (264)
22 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.5E-22 149.9 -4.6 166 730-954 29-195 (264)
23 PLN03150 hypothetical protein; 99.5 1.3E-14 2.7E-19 172.7 10.3 118 860-977 419-538 (623)
24 PLN03150 hypothetical protein; 99.4 2.4E-12 5.2E-17 153.4 13.8 150 14-171 366-526 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 4.3E-13 9.4E-18 144.7 -5.4 171 712-945 78-248 (722)
26 KOG1909 Ran GTPase-activating 99.1 4.5E-12 9.8E-17 129.6 -1.3 93 80-173 27-133 (382)
27 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.4E-15 133.5 8.6 198 666-949 97-295 (394)
28 KOG3207 Beta-tubulin folding c 99.0 4.4E-11 9.5E-16 125.8 0.8 163 81-249 119-283 (505)
29 KOG0532 Leucine-rich repeat (L 99.0 1.9E-11 4.1E-16 132.3 -2.6 175 514-699 73-247 (722)
30 KOG1909 Ran GTPase-activating 99.0 3.6E-11 7.9E-16 123.1 -0.4 118 56-175 30-172 (382)
31 COG4886 Leucine-rich repeat (L 99.0 3.7E-10 8.1E-15 129.2 7.5 33 569-603 97-129 (394)
32 KOG3207 Beta-tubulin folding c 99.0 2E-10 4.4E-15 120.8 3.0 91 340-431 244-341 (505)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.4E-14 106.0 4.9 130 80-245 16-148 (175)
34 KOG1259 Nischarin, modulator o 98.9 3.1E-10 6.6E-15 113.1 0.7 87 859-948 329-416 (490)
35 KOG1259 Nischarin, modulator o 98.9 4.7E-10 1E-14 111.8 1.9 133 731-922 281-414 (490)
36 PF14580 LRR_9: Leucine-rich r 98.8 3.5E-09 7.6E-14 102.6 5.6 39 132-173 16-55 (175)
37 PF13855 LRR_8: Leucine rich r 98.7 6E-09 1.3E-13 82.8 3.4 60 860-919 2-61 (61)
38 KOG0531 Protein phosphatase 1, 98.7 2.7E-09 5.8E-14 122.1 -0.1 246 614-948 72-322 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.7 8E-09 1.7E-13 125.7 3.9 104 83-193 545-650 (889)
40 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.4E-13 81.2 3.3 61 883-943 1-61 (61)
41 KOG4341 F-box protein containi 98.7 2.6E-09 5.7E-14 112.0 -1.5 254 41-298 96-357 (483)
42 PF08263 LRRNT_2: Leucine rich 98.6 4.7E-08 1E-12 70.7 3.7 34 19-52 2-43 (43)
43 KOG4658 Apoptotic ATPase [Sign 98.6 3.8E-08 8.3E-13 119.8 4.7 127 566-696 524-652 (889)
44 KOG0531 Protein phosphatase 1, 98.5 2.1E-08 4.5E-13 114.7 -0.2 196 81-299 70-267 (414)
45 KOG2120 SCF ubiquitin ligase, 98.4 1.1E-08 2.4E-13 102.4 -4.0 91 83-176 185-276 (419)
46 KOG2120 SCF ubiquitin ligase, 98.4 1E-08 2.2E-13 102.6 -4.6 135 112-273 186-324 (419)
47 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.5E-12 95.2 1.7 63 109-173 69-134 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.3 2.3E-07 5.1E-12 91.8 0.8 92 82-173 29-133 (388)
49 COG5238 RNA1 Ran GTPase-activa 98.2 2.8E-07 6.1E-12 91.3 0.9 245 56-301 30-317 (388)
50 KOG2982 Uncharacterized conser 98.2 1.1E-06 2.4E-11 88.3 4.8 115 131-273 41-157 (418)
51 KOG1859 Leucine-rich repeat pr 98.2 2.9E-08 6.3E-13 110.9 -7.4 111 336-454 181-291 (1096)
52 KOG4579 Leucine-rich repeat (L 98.2 7.8E-08 1.7E-12 85.2 -3.6 87 860-949 78-164 (177)
53 KOG4341 F-box protein containi 98.1 1.8E-07 3.9E-12 98.6 -3.6 217 209-428 214-438 (483)
54 KOG1859 Leucine-rich repeat pr 98.1 1.4E-07 3.1E-12 105.5 -4.7 176 533-721 102-291 (1096)
55 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.9E-10 95.4 4.7 160 110-273 121-286 (699)
56 KOG4579 Leucine-rich repeat (L 97.8 1.7E-06 3.8E-11 76.9 -2.8 68 860-929 101-168 (177)
57 PRK15386 type III secretion pr 97.8 5.6E-05 1.2E-09 82.6 7.6 56 883-942 156-217 (426)
58 PF12799 LRR_4: Leucine Rich r 97.7 2.8E-05 6E-10 56.2 3.0 36 884-920 2-37 (44)
59 PF12799 LRR_4: Leucine Rich r 97.6 4.2E-05 9.2E-10 55.3 3.1 37 860-897 2-38 (44)
60 KOG3665 ZYG-1-like serine/thre 97.4 4.2E-05 9E-10 91.3 1.2 84 211-297 122-205 (699)
61 PRK15386 type III secretion pr 97.4 0.00057 1.2E-08 74.9 9.8 32 638-672 156-187 (426)
62 KOG1644 U2-associated snRNP A' 97.3 0.00033 7E-09 67.3 5.6 87 538-627 39-126 (233)
63 PF13306 LRR_5: Leucine rich r 97.1 0.00084 1.8E-08 62.9 6.1 108 484-598 4-111 (129)
64 KOG1644 U2-associated snRNP A' 97.1 0.00085 1.8E-08 64.5 5.7 66 338-403 60-125 (233)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0009 2E-08 62.7 6.0 79 540-622 11-89 (129)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00051 1.1E-08 69.1 3.1 88 81-174 41-130 (260)
67 KOG1947 Leucine rich repeat pr 96.7 0.00029 6.3E-09 83.4 -0.9 85 235-320 241-327 (482)
68 KOG1947 Leucine rich repeat pr 96.5 0.00063 1.4E-08 80.5 -0.0 169 210-404 268-440 (482)
69 KOG2739 Leucine-rich acidic nu 96.4 0.0017 3.8E-08 65.4 2.1 87 233-320 61-149 (260)
70 KOG2123 Uncharacterized conser 95.2 0.0025 5.5E-08 64.3 -2.0 59 236-300 18-76 (388)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0073 1.6E-07 36.2 0.7 18 885-903 2-19 (22)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0081 1.8E-07 36.0 0.8 18 909-927 2-19 (22)
73 KOG2123 Uncharacterized conser 94.5 0.0021 4.6E-08 64.7 -4.7 86 82-176 18-104 (388)
74 KOG4308 LRR-containing protein 94.5 0.00047 1E-08 78.8 -10.9 60 344-404 378-445 (478)
75 KOG4308 LRR-containing protein 94.1 0.0007 1.5E-08 77.4 -10.6 90 84-173 88-185 (478)
76 PF13504 LRR_7: Leucine rich r 89.8 0.2 4.3E-06 27.7 1.3 11 909-919 3-13 (17)
77 PF13504 LRR_7: Leucine rich r 89.4 0.21 4.5E-06 27.6 1.1 13 884-896 2-14 (17)
78 KOG0473 Leucine-rich repeat pr 88.5 0.015 3.3E-07 57.2 -6.4 82 860-944 43-124 (326)
79 KOG3864 Uncharacterized conser 86.7 0.12 2.7E-06 50.2 -1.4 87 213-301 103-190 (221)
80 smart00370 LRR Leucine-rich re 85.5 0.62 1.4E-05 29.1 1.8 13 884-896 3-15 (26)
81 smart00369 LRR_TYP Leucine-ric 85.5 0.62 1.4E-05 29.1 1.8 13 884-896 3-15 (26)
82 KOG0473 Leucine-rich repeat pr 83.8 0.054 1.2E-06 53.5 -5.3 62 857-920 63-124 (326)
83 smart00370 LRR Leucine-rich re 83.2 0.89 1.9E-05 28.4 1.8 21 782-802 2-22 (26)
84 smart00369 LRR_TYP Leucine-ric 83.2 0.89 1.9E-05 28.4 1.8 21 782-802 2-22 (26)
85 KOG3864 Uncharacterized conser 79.4 0.36 7.8E-06 47.1 -1.5 80 85-168 103-184 (221)
86 PF13516 LRR_6: Leucine Rich r 75.8 0.96 2.1E-05 27.6 0.2 14 735-748 3-16 (24)
87 PF13516 LRR_6: Leucine Rich r 74.7 1.4 2.9E-05 26.9 0.7 20 237-256 2-21 (24)
88 KOG4242 Predicted myosin-I-bin 70.8 20 0.00042 40.2 8.6 110 56-173 165-281 (553)
89 smart00365 LRR_SD22 Leucine-ri 69.0 3.9 8.5E-05 25.6 1.7 15 906-920 1-15 (26)
90 smart00364 LRR_BAC Leucine-ric 63.5 4.8 0.0001 25.1 1.3 13 908-920 3-15 (26)
91 PF08693 SKG6: Transmembrane a 62.5 2.2 4.8E-05 29.6 -0.2 7 1023-1029 33-39 (40)
92 PF15102 TMEM154: TMEM154 prot 56.8 9.7 0.00021 35.3 2.7 22 1007-1028 66-87 (146)
93 smart00368 LRR_RI Leucine rich 56.4 6 0.00013 25.2 1.0 13 112-124 3-15 (28)
94 PHA03099 epidermal growth fact 51.0 7 0.00015 34.8 0.8 32 1006-1037 106-137 (139)
95 KOG4242 Predicted myosin-I-bin 49.5 95 0.0021 35.1 9.2 113 210-326 164-280 (553)
96 PF01102 Glycophorin_A: Glycop 46.3 12 0.00026 33.9 1.6 21 1003-1023 67-87 (122)
97 TIGR00864 PCC polycystin catio 41.6 7.5 0.00016 53.2 -0.6 36 913-948 1-36 (2740)
98 KOG3763 mRNA export factor TAP 39.9 19 0.00041 41.2 2.2 80 185-268 218-307 (585)
99 KOG3763 mRNA export factor TAP 29.8 29 0.00063 39.8 1.7 83 235-320 216-307 (585)
100 PRK00523 hypothetical protein; 29.4 48 0.001 26.6 2.3 29 1004-1032 7-35 (72)
101 PRK01844 hypothetical protein; 29.1 55 0.0012 26.3 2.6 28 1005-1032 7-34 (72)
102 smart00367 LRR_CC Leucine-rich 25.4 57 0.0012 20.2 1.8 9 239-247 4-12 (26)
103 PF04478 Mid2: Mid2 like cell 25.2 62 0.0013 30.4 2.6 20 1004-1023 55-74 (154)
104 TIGR00864 PCC polycystin catio 24.2 44 0.00096 46.3 2.1 32 865-896 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-68 Score=683.21 Aligned_cols=348 Identities=37% Similarity=0.557 Sum_probs=261.4
Q ss_pred EEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccC
Q 001547 520 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599 (1056)
Q Consensus 520 ~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~ 599 (1056)
+|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|.
T Consensus 264 ~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~---------------- 326 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV---------------- 326 (968)
T ss_pred EEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh----------------
Confidence 3333444444444444443 56666666666666666666665666666666655555544444
Q ss_pred CcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCc
Q 001547 600 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 679 (1056)
Q Consensus 600 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 679 (1056)
.+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|.++..+++|+.|++++|.+.+.+|
T Consensus 327 ---------~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 327 ---------ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred ---------hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence 44444455555555555555555555556666666666666666666666666666666666666666666
Q ss_pred ccccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCC
Q 001547 680 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 759 (1056)
Q Consensus 680 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 759 (1056)
..+..+++|+.|++++|++++.+| . .+..+++|+.|++++|.+++.+|..+..+++
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p-----------------------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELP-----------------------S-EFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECC-----------------------h-hHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 666666666666666666654333 2 5666777777777777777777777777888
Q ss_pred CCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhh
Q 001547 760 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 839 (1056)
Q Consensus 760 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (1056)
|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.+++
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~--------------------------------- 499 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS--------------------------------- 499 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh---------------------------------
Confidence 8888888888887777665 358899999999999999888776644
Q ss_pred eeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccC
Q 001547 840 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 919 (1056)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 919 (1056)
.|++|+|++|++.+.+|+.++++++|++|+|++|.++|.+|..|+++++|+.|||++|++
T Consensus 500 --------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 500 --------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred --------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCeEEcccCcccccCCCcccccCCCCccccCCCCCCCCCC
Q 001547 920 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 972 (1056)
Q Consensus 920 ~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~ 972 (1056)
+|.+|..+..+++|+++++++|+++|.+|. .+++.++...++.|||.+|+.+
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999998 7899999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-56 Score=572.01 Aligned_cols=519 Identities=31% Similarity=0.508 Sum_probs=386.9
Q ss_pred CCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCCCccEE
Q 001547 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 421 (1056)
Q Consensus 342 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 421 (1056)
.+++.|++++|.+.+.+|..|..+++|+.|++++|.++|.+|...+..+++|++|++++|.+++.+|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 47889999999999888888999999999999999998888655566899999999999988876654 234555555
Q ss_pred eccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCC
Q 001547 422 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 501 (1056)
Q Consensus 422 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 501 (1056)
++++|.+.+ .+|..+..+++|++|++++|.+.+.+|
T Consensus 146 ~Ls~n~~~~---------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~p----------------- 181 (968)
T PLN00113 146 DLSNNMLSG---------------------------EIPNDIGSFSSLKVLDLGGNVLVGKIP----------------- 181 (968)
T ss_pred ECcCCcccc---------------------------cCChHHhcCCCCCEEECccCcccccCC-----------------
Confidence 555554432 123333444444444444444444444
Q ss_pred CcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCcc
Q 001547 502 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 581 (1056)
Q Consensus 502 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 581 (1056)
..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|.+++.+
T Consensus 182 --------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 182 --------NSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred --------hhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence 44445555555555555555555554443 555666666666555555555555666666666666555555
Q ss_pred chHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCC
Q 001547 582 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 661 (1056)
Q Consensus 582 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 661 (1056)
|..+ ..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+
T Consensus 253 p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 253 PSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred ChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence 5544 245566666666666655555555566666666666666666666666666666666666666666666666666
Q ss_pred CCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCC-CCcccEEEcCCcccccccCcccccCCCCccEEE
Q 001547 662 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 740 (1056)
Q Consensus 662 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 740 (1056)
++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+. ..+++.+++++|.+.+.+|. .+..+++|+.|+
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~ 410 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVR 410 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEE
Confidence 6666666666666666666666666666666666666666555443 24566666666666667776 788999999999
Q ss_pred ccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCC
Q 001547 741 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 820 (1056)
Q Consensus 741 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 820 (1056)
+++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..++.
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------------- 474 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---------------- 474 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc----------------
Confidence 9999999999999999999999999999999999999999999999999999999988875532
Q ss_pred CccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCccccc
Q 001547 821 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 900 (1056)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 900 (1056)
+.|+.||+++|++++.+|..|.++++|+.|+|++|++++.+|
T Consensus 475 --------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 475 --------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred --------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 268999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcccccCCCcccccCCCCccccCCCCCCCCCC
Q 001547 901 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 972 (1056)
Q Consensus 901 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~ 972 (1056)
..++++++|++|||++|+++|.+|..+..+++|+.|++++|+++|.+|.....+..+....+.+|+..+..|
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999999999999999999999999999999999877788888999999999887665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-38 Score=335.85 Aligned_cols=377 Identities=24% Similarity=0.287 Sum_probs=280.7
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceec
Q 001547 542 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 621 (1056)
Q Consensus 542 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 621 (1056)
.-+.|++++|.+..+.+..|.++++|+++++.+|.++ .||.... ...+|+.|+|.+|.|+.+-.+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 3456677777776666666777777777777777776 6665432 3445777777777777666666777777777777
Q ss_pred ccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCccc
Q 001547 622 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 701 (1056)
Q Consensus 622 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 701 (1056)
+.|.++..-...|..-.++++|+|++|.|+..-...|..+.+|.+|.|+.|+++...+..|.+++.|+.|+|..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 77777755445666666777777777777766666677777777777777777766666777777777777777776533
Q ss_pred CCCCC-CCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccC
Q 001547 702 LPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR 780 (1056)
Q Consensus 702 ~p~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 780 (1056)
--..| +.++|+.|.+..|.+. .+.++.|..+.+++.|+|+.|+++..-..|+.++++|+.|++++|.|...-++.+..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 22222 3457777777777775 455668888888999999999888777788888899999999999888888888888
Q ss_pred CCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccc
Q 001547 781 LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL 860 (1056)
Q Consensus 781 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 860 (1056)
.++|++|+|++|+++...+..|..+. .
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------------~ 342 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------------Q 342 (873)
T ss_pred cccceeEeccccccccCChhHHHHHH-----------------------------------------------------H
Confidence 88999999999988887777765543 6
Q ss_pred cCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccc---cccCCCCCCEEEccCccCcccCCccccCCCCCCeEE
Q 001547 861 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL---TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 937 (1056)
Q Consensus 861 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ 937 (1056)
|++|+|++|.+...-...|..+++|++|||++|.+++.|.+ .|..|++|+.|+|.+|+|...--.+|..+..|+.||
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 88888888888877677788888888888888888887764 477788888888888888855557888888888888
Q ss_pred cccCcccccCCCcccccCCCCccccCCCCCCCCCCCCC
Q 001547 938 VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 975 (1056)
Q Consensus 938 ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l~~ 975 (1056)
+.+|.+...-|..+.++ .++..-+..-.++|+|.+.|
T Consensus 423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred CCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 88888877666656666 66667777777889887654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-36 Score=321.42 Aligned_cols=365 Identities=23% Similarity=0.222 Sum_probs=290.8
Q ss_pred CccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCCCccEEe
Q 001547 343 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 422 (1056)
Q Consensus 343 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 422 (1056)
.-+.|++++|.+...-+..|.++++|+.+++..|.++ .| |...+....|+.|+|.+|.++ .+..+.+.-++.|+.+|
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~I-P~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RI-PRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hc-ccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 4567999999999888888899999999999999987 77 554555556999999999887 56667777788888888
Q ss_pred ccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCCC
Q 001547 423 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 502 (1056)
Q Consensus 423 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n 502 (1056)
++.|.|+.+.. .-+..-.++++|+|++|
T Consensus 156 LSrN~is~i~~----------------------------------------------------~sfp~~~ni~~L~La~N 183 (873)
T KOG4194|consen 156 LSRNLISEIPK----------------------------------------------------PSFPAKVNIKKLNLASN 183 (873)
T ss_pred hhhchhhcccC----------------------------------------------------CCCCCCCCceEEeeccc
Confidence 88887763321 11223456778888888
Q ss_pred cCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccc
Q 001547 503 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP 582 (1056)
Q Consensus 503 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~ 582 (1056)
.++......|..+.+|..|.|+.|+++ .+|...|+.+++|+.|+|..|+|.-..-..|.++++|+.|.|..|.+. .+.
T Consensus 184 ~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~ 261 (873)
T KOG4194|consen 184 RITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLD 261 (873)
T ss_pred cccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-ccc
Confidence 888777788888889999999999998 899999988999999999999998665678999999999999999998 888
Q ss_pred hHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCC
Q 001547 583 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 662 (1056)
Q Consensus 583 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 662 (1056)
+..|..+.++++|+|+.|+++..-..++.+++.|+.|++++|.|..+-++++..+++|++|+|++|+++...+..|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 88888999999999999999988888999999999999999999988899999999999999999999988888999999
Q ss_pred CCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCC----CCCcccEEEcCCcccccccCcccccCCCCccE
Q 001547 663 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF----YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 738 (1056)
Q Consensus 663 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 738 (1056)
.|++|.|+.|.+.......|..+++|+.|||++|.++..+.+.. +.++|++|++.+|++. .|+..+|.++.+|+.
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccce
Confidence 99999999999987777888999999999999999987665432 1234555555555543 344445555555555
Q ss_pred EEccCccCCcccchhhhccCCCCEEEcC
Q 001547 739 LDLSYNYLNGSIPDWIDGLSQLSHLNLA 766 (1056)
Q Consensus 739 L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 766 (1056)
|||.+|.|..+.|++|..+ .|+.|.+.
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhc
Confidence 5555555554555555544 44444443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-38 Score=321.86 Aligned_cols=475 Identities=27% Similarity=0.386 Sum_probs=297.6
Q ss_pred CCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCCCccEE
Q 001547 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 421 (1056)
Q Consensus 342 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 421 (1056)
..|+.+.+++|.+....+ .+.++..|++|++++|+++ .+ |.+++.+..++.++.+.|++. .+| ..+..+.+|..+
T Consensus 45 v~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhhh
Confidence 456777788887764443 4677778888888888876 66 667777777777777777665 222 123333444444
Q ss_pred eccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCC
Q 001547 422 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 501 (1056)
Q Consensus 422 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 501 (1056)
+++.|.+ . ++|+. ++.+..++.++..+
T Consensus 120 ~~s~n~~---------------------------------------------------~-el~~~-i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 120 DCSSNEL---------------------------------------------------K-ELPDS-IGRLLDLEDLDATN 146 (565)
T ss_pred hccccce---------------------------------------------------e-ecCch-HHHHhhhhhhhccc
Confidence 4444333 2 22333 23566667777777
Q ss_pred CcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCcc
Q 001547 502 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 581 (1056)
Q Consensus 502 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 581 (1056)
|+++. .+..+..+.++..+++.+|.+. ..|..... ++.|+++|..+|.++ .+|+.++.+.+|..|++..|++. .+
T Consensus 147 N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 147 NQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred ccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence 77663 2344556666667777777766 44544444 666777777666665 56666777777777777777766 56
Q ss_pred chHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCC
Q 001547 582 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 661 (1056)
Q Consensus 582 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 661 (1056)
|+ |.+|..|++++++.|++.-...+....++++.+||+++|++. ..|+.+..+.+|++||+++|.++ .+|..++++
T Consensus 222 Pe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 222 PE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred CC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 62 235666666777666666333333336666666677776666 55666666666666777666666 455566666
Q ss_pred CCCcEEEcCCCcccCCCcccccCCCC---CcEEE-------cccC---------cCcccCCCCCCCCcccEEEcCCcccc
Q 001547 662 KGLQHIVMPKNHLEGPIPVEFCRLDS---LQILD-------ISDN---------NISGSLPSCFYPLSIKQVHLSKNMLH 722 (1056)
Q Consensus 662 ~~L~~L~l~~n~l~~~~p~~~~~l~~---L~~L~-------Ls~n---------~l~~~~p~~~~~~~L~~L~l~~n~~~ 722 (1056)
.|+.|.+.+|.+..+-. .+-+... |++|. ++.- ...+..|......+.+.|++++-+++
T Consensus 298 -hL~~L~leGNPlrTiRr-~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRR-EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred -eeeehhhcCCchHHHHH-HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 66666666666542211 1111000 11110 0000 00111222222335666777766664
Q ss_pred cccCcccccCCC--CccEEEccCccCCcccchhhhccCCCCE-EEcCCCcccccCChhccCCCCCCEEEccCCcCcccCC
Q 001547 723 GQLKEGTFFNCS--SLVTLDLSYNYLNGSIPDWIDGLSQLSH-LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 799 (1056)
Q Consensus 723 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 799 (1056)
.+|...|..-. -.+..+++.|++. ++|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|
T Consensus 376 -~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP 451 (565)
T KOG0472|consen 376 -LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLP 451 (565)
T ss_pred -cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcc
Confidence 45554443322 2567788888887 66776666655554 34444444 477888888888888888887765 445
Q ss_pred ccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhc
Q 001547 800 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 879 (1056)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 879 (1056)
..++.+. .|+.||+|.|++. .+|..+
T Consensus 452 ~e~~~lv-----------------------------------------------------~Lq~LnlS~NrFr-~lP~~~ 477 (565)
T KOG0472|consen 452 EEMGSLV-----------------------------------------------------RLQTLNLSFNRFR-MLPECL 477 (565)
T ss_pred hhhhhhh-----------------------------------------------------hhheecccccccc-cchHHH
Confidence 5444432 5788888888887 788887
Q ss_pred cCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCccc
Q 001547 880 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 944 (1056)
Q Consensus 880 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~ 944 (1056)
..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|++|++++|++.
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 77777877777778888777777888888888888888887 78888888888888888888887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=317.21 Aligned_cols=457 Identities=29% Similarity=0.394 Sum_probs=335.7
Q ss_pred CCCCCCCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCC
Q 001547 337 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS 416 (1056)
Q Consensus 337 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 416 (1056)
.+.++..|.+|++++|++. ..|.+++.+..++.++.++|+++ .+ |..++.+.+|..++.++|.+.. ++ +.++.+-
T Consensus 63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~l-p~~i~s~~~l~~l~~s~n~~~e-l~-~~i~~~~ 137 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-EL-PEQIGSLISLVKLDCSSNELKE-LP-DSIGRLL 137 (565)
T ss_pred hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hc-cHHHhhhhhhhhhhccccceee-cC-chHHHHh
Confidence 4556777888888888876 55667788888888888888876 66 6778888888888888887762 22 1344455
Q ss_pred CccEEeccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcE
Q 001547 417 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF 496 (1056)
Q Consensus 417 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~ 496 (1056)
.|+.++..+|.+.. .|..+. ++.++..
T Consensus 138 ~l~dl~~~~N~i~s----------------------------lp~~~~-------------------------~~~~l~~ 164 (565)
T KOG0472|consen 138 DLEDLDATNNQISS----------------------------LPEDMV-------------------------NLSKLSK 164 (565)
T ss_pred hhhhhhcccccccc----------------------------CchHHH-------------------------HHHHHHH
Confidence 55555555544431 222222 4555555
Q ss_pred EecCCCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCcc
Q 001547 497 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 576 (1056)
Q Consensus 497 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 576 (1056)
+++.+|.+....+..+. ++.|+++|...|.+. .+|..++. +.+|+.|++.+|++. ..| .|.++..|+++.++.|.
T Consensus 165 l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQ 239 (565)
T ss_pred hhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccH
Confidence 55555555544443333 777888888888776 88988886 899999999999988 566 78999999999999999
Q ss_pred CCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCc
Q 001547 577 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 656 (1056)
Q Consensus 577 l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 656 (1056)
+. .+|+....++.++..||+.+|+++ ..|+.+.-+.+|.+||+++|.++ .+|..++++ +|+.|-+.+|++.. +..
T Consensus 240 i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr 314 (565)
T KOG0472|consen 240 IE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRR 314 (565)
T ss_pred HH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHH
Confidence 98 899998888999999999999998 68888999999999999999998 678889999 89999999998752 222
Q ss_pred cccCCCC---CcEEE-------cCCC---cc-cCC-Cc---ccccCCCCCcEEEcccCcCcccCCCCCCCC---cccEEE
Q 001547 657 WLGNLKG---LQHIV-------MPKN---HL-EGP-IP---VEFCRLDSLQILDISDNNISGSLPSCFYPL---SIKQVH 715 (1056)
Q Consensus 657 ~l~~l~~---L~~L~-------l~~n---~l-~~~-~p---~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~---~L~~L~ 715 (1056)
.+-+... |++|. ++.- .- ++. .+ .....+.+.+.|++++-+++....+.|... -.+.++
T Consensus 315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEe
Confidence 1211111 11110 1110 00 000 11 122345678889999888885444444433 377889
Q ss_pred cCCcccccccCcccccCCCCccE-EEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcC
Q 001547 716 LSKNMLHGQLKEGTFFNCSSLVT-LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 794 (1056)
Q Consensus 716 l~~n~~~~~~~~~~~~~~~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 794 (1056)
++.|++. ++|. .+..+..+.+ +++++|.++ .+|..+..+++|..|+|++|.+. .+|..++.+..|+.||++.|+|
T Consensus 395 fskNqL~-elPk-~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 395 FSKNQLC-ELPK-RLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF 470 (565)
T ss_pred cccchHh-hhhh-hhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc
Confidence 9999985 6777 5555555544 566666665 78889999999999999999998 8899999999999999999988
Q ss_pred cccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCC
Q 001547 795 HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH 874 (1056)
Q Consensus 795 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 874 (1056)
. .+|.+..... .++.+-.++|++...
T Consensus 471 r-~lP~~~y~lq-----------------------------------------------------~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 471 R-MLPECLYELQ-----------------------------------------------------TLETLLASNNQIGSV 496 (565)
T ss_pred c-cchHHHhhHH-----------------------------------------------------HHHHHHhcccccccc
Confidence 6 4455443322 355566677898866
Q ss_pred CchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCc
Q 001547 875 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920 (1056)
Q Consensus 875 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 920 (1056)
.|..+.++.+|+.|||.+|.+. .+|..++++++|+.|++++|+++
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 6677999999999999999999 88999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-32 Score=309.47 Aligned_cols=402 Identities=26% Similarity=0.322 Sum_probs=241.6
Q ss_pred CCCCCCCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCC
Q 001547 337 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS 416 (1056)
Q Consensus 337 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 416 (1056)
.+.+-..++.|+++.|-+....-+...+.-+|+.||+++|.+. .. |..+..+.+|+.|+++.|.+. .+| ....++.
T Consensus 16 ~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~ 91 (1081)
T KOG0618|consen 16 QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMR 91 (1081)
T ss_pred hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cC-CchhhhHHHHhhcccchhhHh-hCc-hhhhhhh
Confidence 3333445777888887655433334455666888888888876 66 677888888888888888776 344 3466777
Q ss_pred CccEEeccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcE
Q 001547 417 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF 496 (1056)
Q Consensus 417 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~ 496 (1056)
+|+++.+.+|.+. ..|..+..+++|+.++++.|.+. .+|..+ ..++.++.
T Consensus 92 ~l~~lnL~~n~l~----------------------------~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~ 141 (1081)
T KOG0618|consen 92 NLQYLNLKNNRLQ----------------------------SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEE 141 (1081)
T ss_pred cchhheeccchhh----------------------------cCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHH
Confidence 7777777777654 24566666777777777777654 556553 36677777
Q ss_pred EecCCCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCcc
Q 001547 497 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 576 (1056)
Q Consensus 497 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 576 (1056)
+..++|..... ++. ..++.+++..|.+.+.++.++.. +.. .|+|++|.+. -..+..+.+|+.+....|+
T Consensus 142 ~~~s~N~~~~~----lg~-~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ 210 (1081)
T KOG0618|consen 142 LAASNNEKIQR----LGQ-TSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQ 210 (1081)
T ss_pred Hhhhcchhhhh----hcc-ccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcc
Confidence 77777722111 111 11666777777777666666543 333 5777777765 2234566677777777777
Q ss_pred CCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCc
Q 001547 577 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 656 (1056)
Q Consensus 577 l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 656 (1056)
+. .+.. ..++|+.|+.++|.++...+. ..-.+|++++++.|+++ .+|.+++.|.+|+.++..+|.+. .+|.
T Consensus 211 ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ 281 (1081)
T KOG0618|consen 211 LS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL 281 (1081)
T ss_pred cc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH
Confidence 65 3221 346677777777776632221 12246777777777776 34567777777777777777774 5666
Q ss_pred cccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCC---CCcccEEEcCCcccccccCcccccCC
Q 001547 657 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY---PLSIKQVHLSKNMLHGQLKEGTFFNC 733 (1056)
Q Consensus 657 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~ 733 (1056)
.+...++|+.|.+..|.+. -+|....++++|++|||..|++. .+|..+. ..++..+..+.|.+. ..|...=...
T Consensus 282 ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~ 358 (1081)
T KOG0618|consen 282 RISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNH 358 (1081)
T ss_pred HHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhh
Confidence 6666777777777777765 44555566777777777777765 3333221 113444444444442 1221112233
Q ss_pred CCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCc
Q 001547 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795 (1056)
Q Consensus 734 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 795 (1056)
+.|+.|++.+|.++...-..+.+..+|+.|+|++|++.......+.++..|+.|+||+|+++
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 45555666666665555455555555666666666555333334455555555555555555
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.9e-32 Score=290.14 Aligned_cols=391 Identities=27% Similarity=0.375 Sum_probs=264.7
Q ss_pred eeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCCCcCcCcCcCCCCCCCCccEEEc
Q 001547 444 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 523 (1056)
Q Consensus 444 L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 523 (1056)
.+..++++|......+|.....+++++.|.+.+.++. .+|.. ++.+.+|++|.+++|++... ...++.++.|+.+++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 5666777777777889999999999999998887654 67887 46888999999998887642 345667788888888
Q ss_pred cCCcCCC-CCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcC
Q 001547 524 SNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 602 (1056)
Q Consensus 524 ~~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 602 (1056)
..|++.. -||.++|. +..|..|||++|+++ ..|..+...+++-+|+|++|+|. .||..++.+++.|-+|+|++|++
T Consensus 86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 8888753 37888887 788888888888887 67777888888888888888887 88888877777777788887777
Q ss_pred CccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCC-CCCCccccCCCCCcEEEcCCCcccCCCccc
Q 001547 603 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 681 (1056)
Q Consensus 603 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 681 (1056)
. .+|+.+..+..|++|++++|.+...--..+..+++|++|++++.+-+ ..+|.++..+.+|..++++.|.+. ..|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 6 45555666666666666666654322223334445555555544322 234444444444444444444443 34444
Q ss_pred ccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCC
Q 001547 682 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 761 (1056)
Q Consensus 682 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 761 (1056)
+.+ +.+|+.|+|++|+|+ .+.-..+...+|+
T Consensus 241 ly~------------------------------------------------l~~LrrLNLS~N~it-eL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 241 LYK------------------------------------------------LRNLRRLNLSGNKIT-ELNMTEGEWENLE 271 (1255)
T ss_pred Hhh------------------------------------------------hhhhheeccCcCcee-eeeccHHHHhhhh
Confidence 444 444445555555444 2233344445566
Q ss_pred EEEcCCCcccccCChhccCCCCCCEEEccCCcCcc-cCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhhe
Q 001547 762 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 840 (1056)
Q Consensus 762 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (1056)
+|+++.|+++ .+|..++.++.|+.|.+.+|+++- -+|+.++.+.
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~---------------------------------- 316 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI---------------------------------- 316 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh----------------------------------
Confidence 6666666666 566666666666666666666542 2455555433
Q ss_pred eeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCc
Q 001547 841 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920 (1056)
Q Consensus 841 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 920 (1056)
.|+++..++|++. .+|+.+..+..|+.|.|++|++. .+|+.+.-++-|+.|||..|.--
T Consensus 317 -------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 -------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 5777777788877 88999999999999999999988 78999999999999999999755
Q ss_pred ccCCccccC-CCCCCeEEcccC-----cccccCC
Q 001547 921 GKIPRQLVD-LNTLAIFIVAYN-----NLSGKIP 948 (1056)
Q Consensus 921 ~~ip~~l~~-l~~L~~l~ls~N-----~l~g~ip 948 (1056)
..|+.-.+ -++|+.-|+.+- ++.|..|
T Consensus 376 -VMPPKP~da~~~lefYNIDFSLq~QlrlAG~~p 408 (1255)
T KOG0444|consen 376 -VMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMP 408 (1255)
T ss_pred -cCCCCcchhhhcceeeecceehhhHHhhccCCc
Confidence 34433333 256666665542 4566555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.2e-31 Score=286.38 Aligned_cols=362 Identities=25% Similarity=0.373 Sum_probs=193.3
Q ss_pred CCCccEEEccCCcCC-CCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCC
Q 001547 515 HKRLRFLDVSNNNFQ-GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 593 (1056)
Q Consensus 515 ~~~L~~L~l~~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 593 (1056)
++-.+-+|+++|.++ +.+|.++-. +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence 344566677777766 345555554 666666666666655 56666666666666666666665 333333 2456666
Q ss_pred EEEccCCcCCc-cccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCC
Q 001547 594 FLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 672 (1056)
Q Consensus 594 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 672 (1056)
.+.+..|++.. -+|..+..+..|..||+++|++. ..|..+....++-.|+|++|+|..+.-..+.+++.|-.|+|++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 66666665532 34555556666666666666665 45556666666666666666665332234445666666666666
Q ss_pred cccCCCcccccCCCCCcEEEcccCcCcccC-CCCCCCCcccEEEcCCcccc-cccCcccccCCCCccEEEccCccCCccc
Q 001547 673 HLEGPIPVEFCRLDSLQILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLH-GQLKEGTFFNCSSLVTLDLSYNYLNGSI 750 (1056)
Q Consensus 673 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 750 (1056)
.+. .+|..+..+..|++|+|++|++.-.- -..-...+|+.|.+++.+-+ ..+|. ++..+.+|..+|++.|.+. ..
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-cc
Confidence 664 34445556666666666666543110 00111234444444443221 22343 4445555555555555554 44
Q ss_pred chhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCC
Q 001547 751 PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 830 (1056)
Q Consensus 751 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1056)
|+.+..+++|+.|+|++|+++ .+........+|+.|++|.|+++ ..|+++..++
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~------------------------ 291 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT------------------------ 291 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH------------------------
Confidence 555555555555555555554 23333333445555555555554 2333333322
Q ss_pred CCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccC-CCchhccCCCcCCEEeCCCccCcccccccccCCCCC
Q 001547 831 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 909 (1056)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 909 (1056)
.|+.|.+.+|+++- -||..+|.+.+|+++..++|.+. ..|+.+..+..|
T Consensus 292 -----------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 292 -----------------------------KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred -----------------------------HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 44555555555442 24555555555555555555555 555555555555
Q ss_pred CEEEccCccCcccCCccccCCCCCCeEEcccC
Q 001547 910 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 941 (1056)
Q Consensus 910 ~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N 941 (1056)
+.|.|++|++. .+|+++.-++.|..||+..|
T Consensus 342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHhccccccee-echhhhhhcCCcceeeccCC
Confidence 55555555555 45555555555555555555
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-31 Score=300.42 Aligned_cols=285 Identities=25% Similarity=0.326 Sum_probs=174.7
Q ss_pred ccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCCCccEEec
Q 001547 344 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 423 (1056)
Q Consensus 344 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 423 (1056)
++.+++..|.+.+.++..+..++. .|||++|.+. ...+..+++|+.+....|.+... . -..++|+.|+.
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~l-~----~~g~~l~~L~a 226 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLSEL-E----ISGPSLTALYA 226 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccceE-E----ecCcchheeee
Confidence 677777777777777777766666 6888888775 24567778888888888776511 1 12355666666
Q ss_pred cCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCCCc
Q 001547 424 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 503 (1056)
Q Consensus 424 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~ 503 (1056)
+.|.++.... ...-.+++++++++++++ .+|.|+ ..+.+|+
T Consensus 227 ~~n~l~~~~~-----------------------------~p~p~nl~~~dis~n~l~-~lp~wi-~~~~nle-------- 267 (1081)
T KOG0618|consen 227 DHNPLTTLDV-----------------------------HPVPLNLQYLDISHNNLS-NLPEWI-GACANLE-------- 267 (1081)
T ss_pred ccCcceeecc-----------------------------ccccccceeeecchhhhh-cchHHH-Hhcccce--------
Confidence 6665541110 001125566666666655 355553 3455444
Q ss_pred CcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccch
Q 001547 504 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD 583 (1056)
Q Consensus 504 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~ 583 (1056)
.++..+|.++ .+|..++. ..+|+.|.+.+|.+. .+|....+++.|++|+|..|++. .+|+
T Consensus 268 ----------------~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 268 ----------------ALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred ----------------EecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccch
Confidence 4455555554 56666655 566777777777666 45556666777777777777775 6666
Q ss_pred HHhhcCCC-CCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCC
Q 001547 584 HLAMCCVN-LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 662 (1056)
Q Consensus 584 ~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 662 (1056)
.++..... |..|+.+.|.+.......=..++.|+.|.+.+|.++...-+.+.+..+|+.|+|++|++.......+.++.
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence 55543333 55666666665533322223455677777777777666555666667777777777777633334556667
Q ss_pred CCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCc
Q 001547 663 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 699 (1056)
Q Consensus 663 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 699 (1056)
.|+.|++++|+++ .+|..+.++..|++|...+|++.
T Consensus 408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 408 ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 7777777777766 45666667777777776666665
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.7e-22 Score=255.80 Aligned_cols=340 Identities=22% Similarity=0.258 Sum_probs=213.0
Q ss_pred CCCCCCCccEEEccCCc------CCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchH
Q 001547 511 PIHSHKRLRFLDVSNNN------FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 584 (1056)
Q Consensus 511 ~~~~~~~L~~L~l~~n~------l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~ 584 (1056)
.|..+++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 35567777777775543 222355554443345777777777665 556555 4567777777777776 55555
Q ss_pred HhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCC
Q 001547 585 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL 664 (1056)
Q Consensus 585 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 664 (1056)
+ ..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus 630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 4 356777777777665444454 35667777777777776666677777777777777777765555666554 66777
Q ss_pred cEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccc---c---ccCcccccCCCCccE
Q 001547 665 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH---G---QLKEGTFFNCSSLVT 738 (1056)
Q Consensus 665 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~~ 738 (1056)
+.|++++|...+.+|.. .++|+.|++++|.+. .+|......+|+.|.+.++... + .++...+..+++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 77777777655455532 356677777777764 4555555566666666553211 0 011112223456777
Q ss_pred EEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCC
Q 001547 739 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 818 (1056)
Q Consensus 739 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 818 (1056)
|++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------- 844 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------- 844 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence 7777776666677777777777777777765444566554 5677777777766543333221
Q ss_pred CCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCccc
Q 001547 819 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT 898 (1056)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 898 (1056)
.++++.|+|++|.++ .+|..+..+++|+.|+|++|+--..
T Consensus 845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence 125677777777777 5677777777777777777433335
Q ss_pred ccccccCCCCCCEEEccCcc
Q 001547 899 IPLTFSNLRHIESLDLSYNK 918 (1056)
Q Consensus 899 ~p~~~~~l~~L~~LdLs~N~ 918 (1056)
+|..+..+++|+.+++++|.
T Consensus 885 l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCcccccccCCCeeecCCCc
Confidence 66677777777777777774
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.5e-22 Score=256.09 Aligned_cols=340 Identities=21% Similarity=0.258 Sum_probs=239.8
Q ss_pred ChhhhhcCCCCcEEEccCCc------ccccCCccccCCC-CCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCcc
Q 001547 533 PVEIGDILPSLVYFNISMNA------LDGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 605 (1056)
Q Consensus 533 p~~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~ 605 (1056)
....+..+++|+.|.+..+. +...+|..|..++ +|+.|.+.++.+. .+|..+ ...+|+.|++++|.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence 34445557888888886553 2234566666654 5888888888876 777765 4678888888888876 4
Q ss_pred ccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCC
Q 001547 606 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 685 (1056)
Q Consensus 606 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l 685 (1056)
++..+..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 566677788888888887765556664 7778888888888877666788888888888888888876555666655 67
Q ss_pred CCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCC-------cccchhhhccC
Q 001547 686 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-------GSIPDWIDGLS 758 (1056)
Q Consensus 686 ~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~~~~l~ 758 (1056)
++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|. .+ .+++|+.|++.++... ...|..+...+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhccc
Confidence 88888888888766666643 357788888888764 4554 22 5677777777764321 11222233456
Q ss_pred CCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001547 759 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 838 (1056)
Q Consensus 759 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1056)
+|+.|++++|...+.+|..++++++|+.|++++|+..+.+|... +
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~---------------------------------- 823 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N---------------------------------- 823 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C----------------------------------
Confidence 78888888887777788888888888888888876555555432 1
Q ss_pred heeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCcc
Q 001547 839 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 918 (1056)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 918 (1056)
+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|+|++|+
T Consensus 824 -------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 824 -------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred -------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 236788888887665556553 356788888888887 677788888888888888843
Q ss_pred CcccCCccccCCCCCCeEEcccC
Q 001547 919 LSGKIPRQLVDLNTLAIFIVAYN 941 (1056)
Q Consensus 919 l~~~ip~~l~~l~~L~~l~ls~N 941 (1056)
--..+|..+..++.|+.+++++|
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CcCccCcccccccCCCeeecCCC
Confidence 33357777778888888888877
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=2.1e-25 Score=227.87 Aligned_cols=420 Identities=21% Similarity=0.196 Sum_probs=274.6
Q ss_pred CCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccC-ccCCC
Q 001547 501 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN-NKLTG 579 (1056)
Q Consensus 501 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~ 579 (1056)
+|...|....|-.-.+....++|..|+|+ .||...|+.+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~- 129 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT- 129 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence 34445555555556678889999999998 89999998899999999999999999999999999988877766 8898
Q ss_pred ccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCcccc
Q 001547 580 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 659 (1056)
Q Consensus 580 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~ 659 (1056)
.+|...|.++..|+.|.+.-|++.....+.|..++++..|.+.+|.+..+-...+..+.+++.+++..|.+- ..+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----cdC 204 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----CDC 204 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc-----ccc
Confidence 899999999999999999999999888889999999999999999988554458888889999998888753 123
Q ss_pred CCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCCCC--cccEEEcCCcccccccCcccccCCCCcc
Q 001547 660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLV 737 (1056)
Q Consensus 660 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 737 (1056)
+++.+..... ..|..++.........+.++++...-+..+... ++..-..+.+...+..|...|..+++|+
T Consensus 205 nL~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 205 NLPWLADDLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred ccchhhhHHh-------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence 3333332211 122233334444444444444443333333222 2222222334444566766788899999
Q ss_pred EEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCC
Q 001547 738 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP 817 (1056)
Q Consensus 738 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~ 817 (1056)
.|+|++|+++++-+.||.++..++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|.....+...+..+++
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 99999999998888999999999999999999887667788889999999999999998888888877655444443332
Q ss_pred CCCCc------cccccCC----C----CCchhhhhheeee---ecccccccc---ccc---hhcccc-CeEEcCCCcccC
Q 001547 818 DKPFK------TSFSISG----P----QGSVEKKILEIFE---FTTKNIAYA---YQG---RVLSLL-AGLDLSCNKLVG 873 (1056)
Q Consensus 818 ~~~~~------~~~~~~~----~----~~~~~~~~~~~~~---~~~~~~~~~---~~~---~~l~~L-~~L~Ls~N~l~~ 873 (1056)
..--+ .+..... . ++.+.....+.+. +...+-+.. ... ...+-+ ++..-|+..+.
T Consensus 358 ~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk- 436 (498)
T KOG4237|consen 358 FNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK- 436 (498)
T ss_pred ccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-
Confidence 21111 1110000 0 1111000000010 000000000 000 000001 11222232222
Q ss_pred CCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccC
Q 001547 874 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 941 (1056)
Q Consensus 874 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N 941 (1056)
.+|..+. ....+|++.+|.++ .+|.. .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus 437 ~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 437 LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 3333322 13456788888888 66665 55677 7888888888666677888888888888876
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=2.9e-25 Score=226.92 Aligned_cols=403 Identities=23% Similarity=0.240 Sum_probs=269.3
Q ss_pred cCchHHhhcCCCCcEEecCCCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccC-CcccccCCcc
Q 001547 482 EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM-NALDGSIPSS 560 (1056)
Q Consensus 482 ~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~p~~ 560 (1056)
++|..+ -+.-.+++|..|.|+...+..|..+++|++|||++|.|+ .|....|.+++++..|-+.+ |+|+......
T Consensus 60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 566542 245678999999999999999999999999999999998 77777777899988887776 9999887889
Q ss_pred ccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceeccccccc------------c
Q 001547 561 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV------------G 628 (1056)
Q Consensus 561 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~------------~ 628 (1056)
|+++.+|+.|.+.-|++. .++...+..+++|..|.+.+|.+..+-...|..+..++.+.+..|.+. .
T Consensus 136 F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 999999999999999998 888888899999999999999998666668999999999999998843 2
Q ss_pred cCCccccCCCCCcEEECCCCcCCCCCCcccc-CCCCCcEEEcCCCcccCCCc-ccccCCCCCcEEEcccCcCcccCCCCC
Q 001547 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG-NLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNNISGSLPSCF 706 (1056)
Q Consensus 629 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 706 (1056)
..|..++...-..-..+.+.++...-+..+. .+..+..-..+.+...+.-| ..|..+++|+.|++++|++++.-+.+|
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 2333344433333344444444433222221 11222211222333333333 468899999999999999997777666
Q ss_pred CC-CcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccC-----Chhcc-
Q 001547 707 YP-LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV-----PIQLC- 779 (1056)
Q Consensus 707 ~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~- 779 (1056)
.. ..+++|+|..|++. .+..+.|.++..|++|+|.+|+|+...|.+|..+.+|.+|++-.|.+.-.- -+|+.
T Consensus 295 e~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred cchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 43 46777777777764 344446777777777777777777667777777777777777666654110 01110
Q ss_pred ----------CCCCCCEEEccCCcCccc---CCccccccccccccCCCCCCCCCCccccccCCCCCchhhhh-heeeeec
Q 001547 780 ----------RLNQLQLLDLSDNNLHGL---IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI-LEIFEFT 845 (1056)
Q Consensus 780 ----------~l~~L~~L~Ls~N~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 845 (1056)
.-..++.+++++..+... .|+..+- ...+.+ ...-.. ...+.++
T Consensus 374 ~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~------------~~s~~c----------P~~c~c~~tVvRcS 431 (498)
T KOG4237|consen 374 KSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGC------------LTSSPC----------PPPCTCLDTVVRCS 431 (498)
T ss_pred CCCCCCCCCCCCchhccccchhccccccccCCccccCC------------CCCCCC----------CCCcchhhhhHhhc
Confidence 011233333333322211 0000000 000000 000001 1122223
Q ss_pred cccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCc
Q 001547 846 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917 (1056)
Q Consensus 846 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 917 (1056)
.+.....+ ..+....+++++.+|.++ .+|.+ .+.+| .+|+|+|+++..-...|.++++|.+|-||+|
T Consensus 432 nk~lk~lp-~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 432 NKLLKLLP-RGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhhcC-CCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 33333222 234456789999999999 77877 67788 8999999999888889999999999999987
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=1.1e-20 Score=221.92 Aligned_cols=264 Identities=27% Similarity=0.351 Sum_probs=129.9
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceec
Q 001547 542 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 621 (1056)
Q Consensus 542 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 621 (1056)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|.. .++|++|++++|+++. +|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 3556777777776 4555554 35677777777766 45532 3556666666665553 2221 234455555
Q ss_pred ccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCccc
Q 001547 622 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 701 (1056)
Q Consensus 622 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 701 (1056)
++|.+. .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|++++
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---------------------------~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---------------------------LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-cccc---------------------------cccccceeECCCCcccc-
Confidence 555444 22221 123444444444443 2222 12344555555554442
Q ss_pred CCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCC
Q 001547 702 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 781 (1056)
Q Consensus 702 ~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 781 (1056)
+|. .+.+|+.|++++|.+. .+|. + ..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|.. .
T Consensus 317 Lp~--lp~~L~~L~Ls~N~L~-~LP~--l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 317 LPA--LPSELCKLWAYNNQLT-SLPT--L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred CCC--CcccccccccccCccc-cccc--c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence 221 1122333334444332 1222 0 1356666666666653 3322 2345556666666652 4432 2
Q ss_pred CCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhcccc
Q 001547 782 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 861 (1056)
Q Consensus 782 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 861 (1056)
.+|+.|++++|++++ +|.. .+.|
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l--------------------------------------------------------~s~L 404 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL--------------------------------------------------------PSEL 404 (788)
T ss_pred cccceEEecCCcccC-CCCc--------------------------------------------------------ccCC
Confidence 345666666666553 2211 0135
Q ss_pred CeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccc
Q 001547 862 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 927 (1056)
Q Consensus 862 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l 927 (1056)
+.|++++|++++ +|... .+|+.|++++|+|+ .+|..+.++++|+.|||++|+|+|.+|..+
T Consensus 405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 556666666653 44322 24555666666665 456666666666666666666666655554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.4e-20 Score=217.01 Aligned_cols=268 Identities=26% Similarity=0.331 Sum_probs=201.5
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEE
Q 001547 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 595 (1056)
Q Consensus 516 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L 595 (1056)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----cccccee
Confidence 34568999999998 7898764 589999999999994 564 3578999999999999 77753 4789999
Q ss_pred EccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCccc
Q 001547 596 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 675 (1056)
Q Consensus 596 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 675 (1056)
++++|.++. +|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.++
T Consensus 268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence 999999874 4432 357889999999998 45643 4689999999999985 4542 245778888888887
Q ss_pred CCCcccccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhh
Q 001547 676 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 755 (1056)
Q Consensus 676 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 755 (1056)
+ +|.. ..+|+.|++++|++++ +|. . .++|+.|++++|.+++ +|..
T Consensus 336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~------------------------l---p~~L~~L~Ls~N~L~~-LP~l-- 380 (788)
T PRK15387 336 S-LPTL---PSGLQELSVSDNQLAS-LPT------------------------L---PSELYKLWAYNNRLTS-LPAL-- 380 (788)
T ss_pred c-cccc---ccccceEecCCCccCC-CCC------------------------C---Ccccceehhhcccccc-Cccc--
Confidence 4 4431 2467888888887763 232 1 1356667777777763 4542
Q ss_pred ccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchh
Q 001547 756 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVE 835 (1056)
Q Consensus 756 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1056)
.++|+.|++++|++++ +|.. .++|+.|++++|++++ +|...
T Consensus 381 -~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~--------------------------------- 421 (788)
T PRK15387 381 -PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP--------------------------------- 421 (788)
T ss_pred -ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---------------------------------
Confidence 2467888888888874 5543 3578899999998875 44321
Q ss_pred hhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCC
Q 001547 836 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 906 (1056)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 906 (1056)
..|+.|++++|+++ .+|..++++++|+.|+|++|.|++..|..+..+
T Consensus 422 -----------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 422 -----------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -----------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 14677999999998 789999999999999999999999988877443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.8e-18 Score=205.29 Aligned_cols=119 Identities=25% Similarity=0.361 Sum_probs=64.0
Q ss_pred CCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCcccccee
Q 001547 541 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 620 (1056)
Q Consensus 541 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 620 (1056)
.+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..++ .+|+.|++++|.++. +|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEE
Confidence 34667777777777 3555442 46777778777777 6666553 467777777776663 333322 2455555
Q ss_pred cccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCccc
Q 001547 621 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 675 (1056)
Q Consensus 621 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 675 (1056)
+++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 5555554 3343332 24555555555444 2333222 23444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.1e-18 Score=204.79 Aligned_cols=159 Identities=24% Similarity=0.353 Sum_probs=86.1
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEc
Q 001547 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597 (1056)
Q Consensus 518 L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 597 (1056)
...|+++++.++ .+|..+ .+.++.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence 344555555555 445433 235566666666655 3343332 35666666666665 5555432 35666666
Q ss_pred cCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCC
Q 001547 598 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 677 (1056)
Q Consensus 598 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 677 (1056)
++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 666665 3344332 35666666666666 3455443 467777777777763 444332 356666666666653
Q ss_pred CcccccCCCCCcEEEcccCcCc
Q 001547 678 IPVEFCRLDSLQILDISDNNIS 699 (1056)
Q Consensus 678 ~p~~~~~l~~L~~L~Ls~n~l~ 699 (1056)
+|..+ .++|+.|++++|.++
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALT 338 (754)
T ss_pred CCccc--cccceeccccCCccc
Confidence 33322 245566666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.3e-18 Score=193.66 Aligned_cols=58 Identities=26% Similarity=0.205 Sum_probs=28.4
Q ss_pred EEEccCccCCCccchHHhhcCCCCCEEEccCCcCCcc----ccccccCCccccceecccccc
Q 001547 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH----IFSRIFSLRNLRWLLLEGNHF 626 (1056)
Q Consensus 569 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~ 626 (1056)
.|+|..+.+++.--...+..+.+|++++++++.++.. ++..+...+.+++++++++.+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~ 63 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET 63 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence 3566666665333333334455666666666665432 222333334444444444433
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=2.3e-18 Score=191.53 Aligned_cols=58 Identities=24% Similarity=0.230 Sum_probs=36.2
Q ss_pred EEEccCCccc-ccCCccccCCCCCCEEEccCccCCCc----cchHHhhcCCCCCEEEccCCcCC
Q 001547 545 YFNISMNALD-GSIPSSFGNVIFLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK 603 (1056)
Q Consensus 545 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~L~~n~l~ 603 (1056)
.|+|..+.++ +..+..+..+..|++++++++.+++. ++..+ ...+++++++++++.+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccC
Confidence 4566666665 34445556667788888888877532 23222 24566888888877665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.6e-17 Score=150.62 Aligned_cols=144 Identities=31% Similarity=0.521 Sum_probs=90.0
Q ss_pred cccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCccc-CCcccccccc
Q 001547 729 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTL 807 (1056)
Q Consensus 729 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~ 807 (1056)
.++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|||++|++... .|..|..
T Consensus 51 nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~--- 125 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY--- 125 (264)
T ss_pred cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH---
Confidence 4666677777777777776 56666777777777777777766 6677777777777777777766532 2333322
Q ss_pred ccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCE
Q 001547 808 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 887 (1056)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 887 (1056)
++.|+.|+|+.|.+. .+|..++++++|+.
T Consensus 126 --------------------------------------------------m~tlralyl~dndfe-~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 126 --------------------------------------------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQI 154 (264)
T ss_pred --------------------------------------------------HHHHHHHHhcCCCcc-cCChhhhhhcceeE
Confidence 224566666666665 55666666666666
Q ss_pred EeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCC
Q 001547 888 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 930 (1056)
Q Consensus 888 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l 930 (1056)
|.+..|.+- ..|..++.++.|++|.+.+|+++ .+|.+++.+
T Consensus 155 l~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 155 LSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred EeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 666666665 55666666666666666666665 455554443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=2.1e-17 Score=149.89 Aligned_cols=166 Identities=31% Similarity=0.497 Sum_probs=149.2
Q ss_pred ccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCcccccccccc
Q 001547 730 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 809 (1056)
Q Consensus 730 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 809 (1056)
+.++.+.+.|.+++|+++ ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p--- 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP--- 102 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc---
Confidence 556678889999999999 66778999999999999999998 88999999999999999999987 6788888754
Q ss_pred ccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccC-CCchhccCCCcCCEE
Q 001547 810 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTL 888 (1056)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L 888 (1056)
.|+.|||++|++.. ..|..|-.++.|+.|
T Consensus 103 --------------------------------------------------~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 103 --------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred --------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHHH
Confidence 78999999999975 578889999999999
Q ss_pred eCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcccccCCCccccc
Q 001547 889 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF 954 (1056)
Q Consensus 889 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~ 954 (1056)
+|++|.+. .+|..++++++|+.|.+..|.+- ..|.+++.++.|+.|.+.+|+++-..|+ .+++
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l 195 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANL 195 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhh
Confidence 99999999 88999999999999999999998 8999999999999999999999977776 5444
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=1.3e-14 Score=172.75 Aligned_cols=118 Identities=36% Similarity=0.632 Sum_probs=106.3
Q ss_pred ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcc
Q 001547 860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 939 (1056)
Q Consensus 860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls 939 (1056)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCcccc-cCCCCccccCCCCCCCCCCC-CCCC
Q 001547 940 YNNLSGKIPEWTAQ-FATFNKSSYDGNPFLCGLPL-PICR 977 (1056)
Q Consensus 940 ~N~l~g~ip~~~~~-~~~~~~~~~~gN~~lc~~~l-~~c~ 977 (1056)
+|+++|.+|..... ........+.+|+++|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999975433 23445677899999999764 3663
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=2.4e-12 Score=153.35 Aligned_cols=150 Identities=30% Similarity=0.409 Sum_probs=92.2
Q ss_pred cCcCCHHHHHHHHhhhhcCCCCC--CCCCCCcc----cccceeeCC--CCC--ceEEEeccccccCCccccccccCcCCC
Q 001547 14 SEGCLDHERFALLRLKHFFTDPY--DKGATDCC----QWEGVECSN--TTG--RVIGLYLSETYSGEYWYLNASLFTPFQ 83 (1056)
Q Consensus 14 ~~~c~~~~~~all~~k~~~~~~~--~~~~~~~c----~w~gv~C~~--~~~--~v~~l~l~~~~~~~~~~~~~~~f~~l~ 83 (1056)
...+.++|.+||++||+++.+|. +..+..|| .|.||.|+. .++ +|+.|+|+++.+.+.. +..|..++
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i---p~~i~~L~ 442 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI---PNDISKLR 442 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC---CHHHhCCC
Confidence 34567789999999999987764 22444443 799999953 222 4778888777554331 23455566
Q ss_pred CCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccChhhhcC-CCCC
Q 001547 84 QLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS-LSNL 162 (1056)
Q Consensus 84 ~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~-L~~L 162 (1056)
+|++|+|++|.+.+..+ +.++.+++|++|||++|.+++.+|..++++++|++|+|++|.+.|.+|. .++. ..++
T Consensus 443 ~L~~L~Ls~N~l~g~iP----~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~~~ 517 (623)
T PLN03150 443 HLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLLHR 517 (623)
T ss_pred CCCEEECCCCcccCcCC----hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhccccC
Confidence 66666666666655444 3455666666666666666666666666666666666666666666654 3433 2344
Q ss_pred ceEeCCCCC
Q 001547 163 EELDINDNE 171 (1056)
Q Consensus 163 ~~L~Ls~n~ 171 (1056)
..+++.+|.
T Consensus 518 ~~l~~~~N~ 526 (623)
T PLN03150 518 ASFNFTDNA 526 (623)
T ss_pred ceEEecCCc
Confidence 555555543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=4.3e-13 Score=144.75 Aligned_cols=171 Identities=33% Similarity=0.497 Sum_probs=127.1
Q ss_pred cEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccC
Q 001547 712 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 791 (1056)
Q Consensus 712 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 791 (1056)
...+++.|++. ++|. .+..+..|+.+.+..|.+. .+|..+.++..|..|+|+.|+++ ..|..++.|+ |+.|-+++
T Consensus 78 ~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 45566666664 4555 5556666666777777666 56666777777777777777776 5666666653 66777777
Q ss_pred CcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcc
Q 001547 792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 871 (1056)
Q Consensus 792 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 871 (1056)
|+++ .+|..++. ...|..||.|.|.+
T Consensus 153 Nkl~-~lp~~ig~-----------------------------------------------------~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 153 NKLT-SLPEEIGL-----------------------------------------------------LPTLAHLDVSKNEI 178 (722)
T ss_pred Cccc-cCCccccc-----------------------------------------------------chhHHHhhhhhhhh
Confidence 7665 33433332 23688899999999
Q ss_pred cCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcccc
Q 001547 872 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 945 (1056)
Q Consensus 872 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g 945 (1056)
. .+|..++++.+|+.|++..|++. ..|..+..| .|..||+|.|+++ .||..|..|..|+++-|.+|+|.-
T Consensus 179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 8 78888999999999999999998 566677755 4889999999998 899999999999999999999984
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=4.5e-12 Score=129.60 Aligned_cols=93 Identities=25% Similarity=0.290 Sum_probs=56.8
Q ss_pred cCCCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCc----cchh-------hcCCCCCcEEecCCCccc
Q 001547 80 TPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNS----ILSS-------VARLSSLTSLHLSHNILQ 148 (1056)
Q Consensus 80 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~----~~~~-------l~~l~~L~~L~Ls~n~l~ 148 (1056)
.....+++++||+|.|..-....+...+.+.+.|+..++|+-. +|. +|+. +-.+++|++||||+|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4456667777777776654444444566777788888877652 322 3433 344567888888887765
Q ss_pred CccCh---hhhcCCCCCceEeCCCCCCC
Q 001547 149 GSIDA---KEFDSLSNLEELDINDNEID 173 (1056)
Q Consensus 149 ~~i~~---~~l~~L~~L~~L~Ls~n~l~ 173 (1056)
..-+. ..+..+..|++|.|.+|.+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 32221 23456777777777777654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=1.1e-10 Score=133.49 Aligned_cols=198 Identities=35% Similarity=0.509 Sum_probs=110.3
Q ss_pred EEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCC-CCccEEEccCc
Q 001547 666 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYN 744 (1056)
Q Consensus 666 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n 744 (1056)
.+.+..|.+... +..+..++.++.|++.+|.++...+ ..... .+|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~-------------------------~~~~~~~nL~~L~l~~N 150 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPP-------------------------LIGLLKSNLKELDLSDN 150 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCcc-------------------------ccccchhhccccccccc
Confidence 456666655322 2233444566666666666663322 22223 25666666666
Q ss_pred cCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccc
Q 001547 745 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS 824 (1056)
Q Consensus 745 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1056)
++. .+|..+..+++|+.|++++|++. .+|......+.|+.|++++|+++...+.. .
T Consensus 151 ~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~--------------------- 206 (394)
T COG4886 151 KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E--------------------- 206 (394)
T ss_pred chh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h---------------------
Confidence 665 34445566666666666666665 44544445666666666666665332211 0
Q ss_pred cccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCccccccccc
Q 001547 825 FSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 904 (1056)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 904 (1056)
....|+++++++|++. .++..+..+..+..|.+++|++. .+|..++
T Consensus 207 --------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~ 252 (394)
T COG4886 207 --------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252 (394)
T ss_pred --------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence 0113566666666433 35555666666666666666665 3355666
Q ss_pred CCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcccccCCC
Q 001547 905 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 949 (1056)
Q Consensus 905 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 949 (1056)
.++++++|++++|+++ .++. +..+.+++.+++++|.++...|.
T Consensus 253 ~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 253 NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 6666666666666666 3333 56666666666666666655543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.4e-11 Score=125.76 Aligned_cols=163 Identities=24% Similarity=0.259 Sum_probs=70.3
Q ss_pred CCCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCc--cchhhcCCCCCcEEecCCCcccCccChhhhcC
Q 001547 81 PFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNS--ILSSVARLSSLTSLHLSHNILQGSIDAKEFDS 158 (1056)
Q Consensus 81 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~ 158 (1056)
++++||...|.++.....+.. +....|++++.||||+|-+... +......|++|+.|+|+.|.+.-.+....-..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 345555555555544333321 2234455555555555544432 22233445555555555555542222212234
Q ss_pred CCCCceEeCCCCCCCccccccccccccceeecCCCCCccccccchhhhcCCCCCCcEEecCCCCCCCcccccccccCCCc
Q 001547 159 LSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTN 238 (1056)
Q Consensus 159 L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~ 238 (1056)
+++|+.|.++.|.++...........+.++.|.+..+..-. .......-+..|++|||++|++..... ....+.++.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQ-GYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCccccccc-ccccccccc
Confidence 45555555555555544444444444444444444443100 001112233444555555554443321 113344444
Q ss_pred ccEEecCCCCC
Q 001547 239 LEYLTLDDSSL 249 (1056)
Q Consensus 239 L~~L~L~~~~~ 249 (1056)
|+.|+++.+.+
T Consensus 273 L~~Lnls~tgi 283 (505)
T KOG3207|consen 273 LNQLNLSSTGI 283 (505)
T ss_pred hhhhhccccCc
Confidence 55555444443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.9e-11 Score=132.33 Aligned_cols=175 Identities=30% Similarity=0.448 Sum_probs=151.7
Q ss_pred CCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCC
Q 001547 514 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 593 (1056)
Q Consensus 514 ~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 593 (1056)
.+..-...|++.|++. ++|..+.. +..|+.+.+..|.+. .+|..++++..|++++++.|+++ .+|..++ .--|+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK 146 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence 4455667899999998 88988776 788999999999988 78899999999999999999998 8888874 45699
Q ss_pred EEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCc
Q 001547 594 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 673 (1056)
Q Consensus 594 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 673 (1056)
.|-+++|+++ .+|+.++..+.|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+. .-.|..||++.|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence 9999999998 67888888899999999999987 67888999999999999999997 6777777 4458899999999
Q ss_pred ccCCCcccccCCCCCcEEEcccCcCc
Q 001547 674 LEGPIPVEFCRLDSLQILDISDNNIS 699 (1056)
Q Consensus 674 l~~~~p~~~~~l~~L~~L~Ls~n~l~ 699 (1056)
++ .+|..|.+|+.|++|-|.+|.+.
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC
Confidence 97 78999999999999999999987
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=3.6e-11 Score=123.08 Aligned_cols=118 Identities=22% Similarity=0.171 Sum_probs=81.5
Q ss_pred CceEEEeccccccCCc-cccccccCcCCCCCCEeeCCCCCCCCcccccc-------chhccCCCCCcEEeCCCCcCCCcc
Q 001547 56 GRVIGLYLSETYSGEY-WYLNASLFTPFQQLESLDLSWNNIAGCAENEG-------LERLSRLSKLKKLDLRGNLCNNSI 127 (1056)
Q Consensus 56 ~~v~~l~l~~~~~~~~-~~~~~~~f~~l~~L~~L~Ls~~~~~~~~~~~~-------l~~l~~l~~L~~L~Ls~n~~~~~~ 127 (1056)
..+++++|+|+.++.. ...-...+.+.+.|+..++|+- ++|.+..+. .+++...++|++||||+|.+....
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4589999999965422 2223455678889999999975 344443322 245668889999999999987665
Q ss_pred chh----hcCCCCCcEEecCCCcccCccChh-------------hhcCCCCCceEeCCCCCCCcc
Q 001547 128 LSS----VARLSSLTSLHLSHNILQGSIDAK-------------EFDSLSNLEELDINDNEIDNV 175 (1056)
Q Consensus 128 ~~~----l~~l~~L~~L~Ls~n~l~~~i~~~-------------~l~~L~~L~~L~Ls~n~l~~~ 175 (1056)
++. +.+++.|++|.|.+|.+. ..... ..+.-++||++..+.|.+...
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 554 466899999999999886 22211 234456777777777776544
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=3.7e-10 Score=129.21 Aligned_cols=33 Identities=39% Similarity=0.500 Sum_probs=13.6
Q ss_pred EEEccCccCCCccchHHhhcCCCCCEEEccCCcCC
Q 001547 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 603 (1056)
Q Consensus 569 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 603 (1056)
.+++..|.+...+.... ..+.++.|++.+|.++
T Consensus 97 ~l~~~~~~~~~~~~~~~--~~~~l~~L~l~~n~i~ 129 (394)
T COG4886 97 SLDLNLNRLRSNISELL--ELTNLTSLDLDNNNIT 129 (394)
T ss_pred eeeccccccccCchhhh--cccceeEEecCCcccc
Confidence 45555555432222211 2234444444444444
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2e-10 Score=120.84 Aligned_cols=91 Identities=29% Similarity=0.273 Sum_probs=53.0
Q ss_pred CCCCccEEEccCCcccccc-cccccCCCCCcEEECcCCcCcCcCCCcc------cccCCCCcEEEccCCcccccCCcccc
Q 001547 340 PLAHLQELYIDNNDLRGSL-PWCLANTTSLRILDVSFNQLTGSISSSP------LVHLTSIEELRLSNNHFRIPVSLEPL 412 (1056)
Q Consensus 340 ~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~i~~~~------~~~l~~L~~L~L~~n~l~~~~~~~~l 412 (1056)
.+..|++|+|++|++.... -...+.++.|+.|+++.+.+. ++.... ....++|++|+++.|++..--....+
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence 3556667777776654322 123556677777777777665 331111 24567777777777777533334455
Q ss_pred cCCCCccEEeccCcccccc
Q 001547 413 FNHSKLKIFDAKNNEINGE 431 (1056)
Q Consensus 413 ~~l~~L~~L~l~~n~l~~~ 431 (1056)
..+++|+.+.+..|.+..+
T Consensus 323 ~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccchhhhhhccccccccc
Confidence 5666777777666666543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.1e-09 Score=106.03 Aligned_cols=130 Identities=30% Similarity=0.422 Sum_probs=42.8
Q ss_pred cCCCCCCEeeCCCCCCCCccccccchhcc-CCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccChhhh-c
Q 001547 80 TPFQQLESLDLSWNNIAGCAENEGLERLS-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEF-D 157 (1056)
Q Consensus 80 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l-~ 157 (1056)
.+..++++|+|++|.|+.+. .++ .+.+|++|||++|.+.. .+.+..+++|++|++++|.+. .++. .+ .
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISE-GLDK 85 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHH
T ss_pred cccccccccccccccccccc------chhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-cccc-chHH
Confidence 34456777777777776543 244 46777777888777764 235666777778888877776 5543 33 4
Q ss_pred CCCCCceEeCCCCCCCccccccccccccceeecCCCCCccccccchhhhcCCCCCCcEEecCCCCCCCccc-ccccccCC
Q 001547 158 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLT-TTQELHNF 236 (1056)
Q Consensus 158 ~L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~l~~l 236 (1056)
.+++|++|++++|++....- +..+..+++|++|+|.+|++..... ....+..+
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~--------------------------l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNE--------------------------LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp H-TT--EEE-TTS---SCCC--------------------------CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred hCCcCCEEECcCCcCCChHH--------------------------hHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 57777777777777754431 2235566677777777776653311 11234556
Q ss_pred CcccEEecC
Q 001547 237 TNLEYLTLD 245 (1056)
Q Consensus 237 ~~L~~L~L~ 245 (1056)
++|+.||-.
T Consensus 140 P~Lk~LD~~ 148 (175)
T PF14580_consen 140 PSLKVLDGQ 148 (175)
T ss_dssp TT-SEETTE
T ss_pred ChhheeCCE
Confidence 777777643
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3.1e-10 Score=113.11 Aligned_cols=87 Identities=28% Similarity=0.282 Sum_probs=56.4
Q ss_pred cccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCC-ccccCCCCCCeEE
Q 001547 859 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP-RQLVDLNTLAIFI 937 (1056)
Q Consensus 859 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~l~ 937 (1056)
++|+.||||+|.++ .+-.+-..+-+.++|+|+.|.+... +.++++-+|..||++.|+|..... ..+++++.|+++.
T Consensus 329 ~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 35667777777666 3344445566677777777776622 356666777777777777763222 4567777788888
Q ss_pred cccCcccccCC
Q 001547 938 VAYNNLSGKIP 948 (1056)
Q Consensus 938 ls~N~l~g~ip 948 (1056)
+.+|++.+.+.
T Consensus 406 L~~NPl~~~vd 416 (490)
T KOG1259|consen 406 LTGNPLAGSVD 416 (490)
T ss_pred hcCCCccccch
Confidence 88888776443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=4.7e-10 Score=111.81 Aligned_cols=133 Identities=31% Similarity=0.335 Sum_probs=106.3
Q ss_pred cCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccc
Q 001547 731 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES 810 (1056)
Q Consensus 731 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 810 (1056)
...+.|+.+||++|.|+ .+.+.+.-.|.++.|++++|.+... ..+..+++|+.||||+|.++.... +-
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~G-wh-------- 348 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVG-WH-------- 348 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhh-hH--------
Confidence 34567999999999998 6677888899999999999999732 348889999999999998764311 00
Q ss_pred cCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeC
Q 001547 811 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 890 (1056)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 890 (1056)
..+.+.+.|.|++|.+.. -..++.+-+|..||+
T Consensus 349 ---------------------------------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 349 ---------------------------------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDL 381 (490)
T ss_pred ---------------------------------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccc
Confidence 114478899999999863 345788899999999
Q ss_pred CCccCcccc-cccccCCCCCCEEEccCccCccc
Q 001547 891 SHNNLTGTI-PLTFSNLRHIESLDLSYNKLSGK 922 (1056)
Q Consensus 891 s~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~ 922 (1056)
++|+|.... -..+|+++.|+.+.|.+|++++.
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999998432 25789999999999999999953
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=3.5e-09 Score=102.62 Aligned_cols=39 Identities=31% Similarity=0.523 Sum_probs=6.3
Q ss_pred cCCCCCcEEecCCCcccCccChhhhc-CCCCCceEeCCCCCCC
Q 001547 132 ARLSSLTSLHLSHNILQGSIDAKEFD-SLSNLEELDINDNEID 173 (1056)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~i~~~~l~-~L~~L~~L~Ls~n~l~ 173 (1056)
.+..++++|+|++|.+. .|. .++ .+.+|+.||+++|.++
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~ 55 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQIT 55 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S
T ss_pred ccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCc
Confidence 34445666666666665 343 343 4556666666666554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=6e-09 Score=82.80 Aligned_cols=60 Identities=50% Similarity=0.630 Sum_probs=42.2
Q ss_pred ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccC
Q 001547 860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 919 (1056)
Q Consensus 860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 919 (1056)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466777777777755556677777777777777777766666777777777777777764
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2.7e-09 Score=122.06 Aligned_cols=246 Identities=28% Similarity=0.270 Sum_probs=131.5
Q ss_pred ccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEc
Q 001547 614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 693 (1056)
Q Consensus 614 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 693 (1056)
..++.+.+..|.+.. +-..+..+.+|+.|++.+|++... ...+..+++|++|++++|.++... .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 344444444444442 122344555666666666666522 222455566666666666665432 2344555666666
Q ss_pred ccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccc-hhhhccCCCCEEEcCCCcccc
Q 001547 694 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEG 772 (1056)
Q Consensus 694 s~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~ 772 (1056)
++|.++.. . .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..
T Consensus 148 ~~N~i~~~------------------------~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 148 SGNLISDI------------------------S--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCcchhc------------------------c--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 66665421 1 23445666667777776664433 2 4566667777777776652
Q ss_pred cCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeecccccccc
Q 001547 773 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 852 (1056)
Q Consensus 773 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (1056)
...+..+..+..+++..|.++..-+.....
T Consensus 201 --i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~------------------------------------------------ 230 (414)
T KOG0531|consen 201 --IEGLDLLKKLVLLSLLDNKISKLEGLNELV------------------------------------------------ 230 (414)
T ss_pred --ccchHHHHHHHHhhcccccceeccCcccch------------------------------------------------
Confidence 223333444444566666554322110000
Q ss_pred ccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCccc---CCcc-cc
Q 001547 853 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK---IPRQ-LV 928 (1056)
Q Consensus 853 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~ 928 (1056)
...|+.+++++|.+. .++..+..+..+..|++++|+++..- .+.....+..+..+.|++... .+.. ..
T Consensus 231 -----~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (414)
T KOG0531|consen 231 -----MLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITS 302 (414)
T ss_pred -----hHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccc
Confidence 002667777777776 34455666777777777777776432 234445666667777766521 1111 44
Q ss_pred CCCCCCeEEcccCcccccCC
Q 001547 929 DLNTLAIFIVAYNNLSGKIP 948 (1056)
Q Consensus 929 ~l~~L~~l~ls~N~l~g~ip 948 (1056)
....+..+.+.+|......+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 303 AAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccCccccccc
Confidence 55667777777776665554
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=8e-09 Score=125.67 Aligned_cols=104 Identities=25% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCCEeeCCCCC--CCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccChhhhcCCC
Q 001547 83 QQLESLDLSWNN--IAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 160 (1056)
Q Consensus 83 ~~L~~L~Ls~~~--~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~L~ 160 (1056)
+.|++|=+.+|. +..... +.|..+++|++|||++|.-.+.+|.+++.|.+||+|+++++.+. .+|. .+++|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~----~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk 618 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISG----EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLK 618 (889)
T ss_pred CccceEEEeecchhhhhcCH----HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHH
Confidence 357777777764 333332 44667888888888887766678888888888888888888877 7776 788888
Q ss_pred CCceEeCCCCCCCccccccccccccceeecCCC
Q 001547 161 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 193 (1056)
Q Consensus 161 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~ 193 (1056)
+|.+||+..+.-.... +.....+..|++|.+.
T Consensus 619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLP 650 (889)
T ss_pred hhheeccccccccccc-cchhhhcccccEEEee
Confidence 8888888776543332 2333334444444443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.1e-08 Score=81.22 Aligned_cols=61 Identities=39% Similarity=0.572 Sum_probs=57.5
Q ss_pred CcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcc
Q 001547 883 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 943 (1056)
Q Consensus 883 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l 943 (1056)
++|++|++++|+++...+..|..+++|++||+++|+++...|..|.++++|+++++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988888999999999999999999988889999999999999999985
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=2.6e-09 Score=112.03 Aligned_cols=254 Identities=19% Similarity=0.167 Sum_probs=144.5
Q ss_pred CCcc-cccceeeCCCCCceEEEeccccccCCccccccccCcCC-CCCCEeeCCCCCCCCccccccchhccCCCCCcEEeC
Q 001547 41 TDCC-QWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPF-QQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDL 118 (1056)
Q Consensus 41 ~~~c-~w~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~f~~l-~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~L 118 (1056)
..|| .|++-.=|. +.=..+||.....+.+...-..+..+. -.|+.|.+.++.-.+..+- -..-.+++++++|++
T Consensus 96 a~~c~~~n~~AlD~--~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ssl--rt~~~~CpnIehL~l 171 (483)
T KOG4341|consen 96 AQCCTMWNKLALDG--SCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSL--RTFASNCPNIEHLAL 171 (483)
T ss_pred HHHHHHhhhhhhcc--ccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchh--hHHhhhCCchhhhhh
Confidence 3456 577755543 334455665442221111111222222 3577888887764443321 123457888888888
Q ss_pred CCCc-CCCccchhhc-CCCCCcEEecCCCcccCccChh-hhcCCCCCceEeCCCCC-CCccccccccccccceeecCCCC
Q 001547 119 RGNL-CNNSILSSVA-RLSSLTSLHLSHNILQGSIDAK-EFDSLSNLEELDINDNE-IDNVEVSRGYRGLRKLKSLDLSG 194 (1056)
Q Consensus 119 s~n~-~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~-~l~~L~~L~~L~Ls~n~-l~~~~~~~~~~~~~~l~~L~L~~ 194 (1056)
.++. +++....+++ .+++|++|++..|......... -...+++|++|+++++. +++......+++++.++.+.+.+
T Consensus 172 ~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 172 YGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred hcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence 8885 3333333444 5889999999886433232222 23568999999999885 56655556677777766665554
Q ss_pred CccccccchhhhcCCCCCCcEEecCCCCCCCcccccccccCCCcccEEecCCCC-CCcchhhhhhhcCCCCcEEeccCcc
Q 001547 195 VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCE 273 (1056)
Q Consensus 195 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~L~~~~ 273 (1056)
+..-........-+..+-+.++++..|...+.......-..+..|++|..+++. +++.....++...++|+.|.+++|+
T Consensus 252 C~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 252 CLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred cccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 443333333334445566677777777554433222233457788888888765 4555566777767899999999887
Q ss_pred ccCcccCCCC-Ccccccceecchhhh
Q 001547 274 VNGVLSGQGF-PHFKSLEHLDMRFAR 298 (1056)
Q Consensus 274 ~~~~~~~~~~-~~l~~L~~L~l~~~~ 298 (1056)
.-+..-.+.+ .+.+.|+.+++..+.
T Consensus 332 ~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 332 QFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hhhhhhhhhhhcCChhhhhhcccccc
Confidence 4332221111 334455555544443
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.58 E-value=4.7e-08 Score=70.65 Aligned_cols=34 Identities=35% Similarity=0.788 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhhcCCC-CCCC-----CC--CCcccccceeeC
Q 001547 19 DHERFALLRLKHFFTD-PYDK-----GA--TDCCQWEGVECS 52 (1056)
Q Consensus 19 ~~~~~all~~k~~~~~-~~~~-----~~--~~~c~w~gv~C~ 52 (1056)
++|++||++||+++.+ |.+. .+ ++||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 6899999999999984 5333 22 799999999996
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=3.8e-08 Score=119.82 Aligned_cols=127 Identities=30% Similarity=0.320 Sum_probs=67.4
Q ss_pred CCCEEEccCccCCCccchHHhhcCCCCCEEEccCCc--CCccccccccCCccccceecccccccccCCccccCCCCCcEE
Q 001547 566 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS--LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 643 (1056)
Q Consensus 566 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 643 (1056)
..+...+-+|.+. .++... .++.|+.|-+..|. +.......|..++.|++||+++|.-.+.+|..++.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3444444444443 333332 23445555555543 332233334455556666666555555566666666666666
Q ss_pred ECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccC
Q 001547 644 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 696 (1056)
Q Consensus 644 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n 696 (1056)
++++..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+..-
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 66666665 55666666666666666655544444555555666666665443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=2.1e-08 Score=114.74 Aligned_cols=196 Identities=30% Similarity=0.404 Sum_probs=109.5
Q ss_pred CCCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccChhhhcCCC
Q 001547 81 PFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 160 (1056)
Q Consensus 81 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~L~ 160 (1056)
.+..++.+++..|.+.... ..+..+++|++|++.+|.+.. +...+..+++|++|++++|.|. .+. .+..++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~--~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE--GLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc--chhhcc
Confidence 4566666667777766522 336677888888888887753 2222667788888888888877 444 466777
Q ss_pred CCceEeCCCCCCCccccccccccccceeecCCCCCccccccchhhhcCCCCCCcEEecCCCCCCCcccccccccCCCccc
Q 001547 161 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLE 240 (1056)
Q Consensus 161 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~ 240 (1056)
.|+.|++++|.+.... .+..+..++.++++++.+..+... . +..+.+++.+.+.+|.+... +.+..+..+.
T Consensus 141 ~L~~L~l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i----~~~~~~~~l~ 211 (414)
T KOG0531|consen 141 LLKELNLSGNLISDIS---GLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREI----EGLDLLKKLV 211 (414)
T ss_pred chhhheeccCcchhcc---CCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcc----cchHHHHHHH
Confidence 7888888888776553 222255556666666555544332 1 35556666666666655433 2233333444
Q ss_pred EEecCCCCCCcchhhhhhhcCC--CCcEEeccCccccCcccCCCCCcccccceecchhhhh
Q 001547 241 YLTLDDSSLHISLLQSIGSIFP--SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI 299 (1056)
Q Consensus 241 ~L~L~~~~~~~~~~~~l~~~l~--~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 299 (1056)
.+++..|.+...-+ +.. .+ +|+.++++++.+.... .++..++.++.+++..+++
T Consensus 212 ~~~l~~n~i~~~~~--l~~-~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 212 LLSLLDNKISKLEG--LNE-LVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred HhhcccccceeccC--ccc-chhHHHHHHhcccCcccccc--ccccccccccccchhhccc
Confidence 44555554432111 111 11 2556666666544321 2344455555555555444
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.1e-08 Score=102.40 Aligned_cols=91 Identities=30% Similarity=0.260 Sum_probs=72.5
Q ss_pred CCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccCh-hhhcCCCC
Q 001547 83 QQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDA-KEFDSLSN 161 (1056)
Q Consensus 83 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~-~~l~~L~~ 161 (1056)
..|++||||+..|+..... ..++.+.+|+.|.|.++.+.+.+...++.-.+|+.|||+.+.-..+... -.+.+++.
T Consensus 185 sRlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 3799999999988765532 3467899999999999999999999999999999999998763222221 14688999
Q ss_pred CceEeCCCCCCCccc
Q 001547 162 LEELDINDNEIDNVE 176 (1056)
Q Consensus 162 L~~L~Ls~n~l~~~~ 176 (1056)
|++|++++|.+....
T Consensus 262 L~~LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEK 276 (419)
T ss_pred HhhcCchHhhccchh
Confidence 999999999876554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1e-08 Score=102.63 Aligned_cols=135 Identities=24% Similarity=0.214 Sum_probs=75.9
Q ss_pred CCcEEeCCCCcCCCc-cchhhcCCCCCcEEecCCCcccCccChhhhcCCCCCceEeCCCCCCCccccccccccccceeec
Q 001547 112 KLKKLDLRGNLCNNS-ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 190 (1056)
Q Consensus 112 ~L~~L~Ls~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 190 (1056)
.|++||||...++.. +-.-++.+.+|+.|.|.++.+...|-. .+++-.+|+.|+++.+.--
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~----------------- 247 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGF----------------- 247 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeecccccccc-----------------
Confidence 477777777666533 233355677777777777777655554 6677777777777765411
Q ss_pred CCCCCccccccchhhhcCCCCCCcEEecCCCCCCCccccccccc-CCCcccEEecCCCC--CCcchhhhhhhcCCCCcEE
Q 001547 191 DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELH-NFTNLEYLTLDDSS--LHISLLQSIGSIFPSLKNL 267 (1056)
Q Consensus 191 ~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~-~l~~L~~L~L~~~~--~~~~~~~~l~~~l~~L~~L 267 (1056)
...+..-.+.+++.|.+|+|+||....+.-. .... =-++|..|+|+++. +...-...+...+|+|..|
T Consensus 248 --------t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 248 --------TENALQLLLSSCSRLDELNLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred --------chhHHHHHHHhhhhHhhcCchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 1111112356677777777777766544321 1111 12456666676653 2222333444446666666
Q ss_pred eccCcc
Q 001547 268 SMSGCE 273 (1056)
Q Consensus 268 ~L~~~~ 273 (1056)
||++|.
T Consensus 319 DLSD~v 324 (419)
T KOG2120|consen 319 DLSDSV 324 (419)
T ss_pred cccccc
Confidence 666664
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.2e-07 Score=95.21 Aligned_cols=63 Identities=35% Similarity=0.496 Sum_probs=34.8
Q ss_pred CCCCCcEEeCCCCcCCCc--cchhhcCCCCCcEEecCCCcccCccChhhh-cCCCCCceEeCCCCCCC
Q 001547 109 RLSKLKKLDLRGNLCNNS--ILSSVARLSSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDNEID 173 (1056)
Q Consensus 109 ~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~L~~L~~L~Ls~n~l~ 173 (1056)
..++++.|||.+|.+++. +...+.++|+|++|+|+.|++...|.. + .-+.+|++|-|.+..+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCC
Confidence 355666666666666543 333455666666666666666533321 1 23456666666555443
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=2.3e-07 Score=91.84 Aligned_cols=92 Identities=21% Similarity=0.334 Sum_probs=50.2
Q ss_pred CCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCC---Cc-------cchhhcCCCCCcEEecCCCcccCcc
Q 001547 82 FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCN---NS-------ILSSVARLSSLTSLHLSHNILQGSI 151 (1056)
Q Consensus 82 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~---~~-------~~~~l~~l~~L~~L~Ls~n~l~~~i 151 (1056)
+..+..+|||+|.|..-........+.+-++|++.++++-... +. +.+.+..|++|+..+||+|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3445555555555544433333344555566666666654211 11 2234556677777777777766444
Q ss_pred Ch---hhhcCCCCCceEeCCCCCCC
Q 001547 152 DA---KEFDSLSNLEELDINDNEID 173 (1056)
Q Consensus 152 ~~---~~l~~L~~L~~L~Ls~n~l~ 173 (1056)
|+ +.++.-+.|.+|.+++|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 42 23566677777777777553
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=2.8e-07 Score=91.26 Aligned_cols=245 Identities=21% Similarity=0.190 Sum_probs=146.5
Q ss_pred CceEEEeccccccCCccc-cccccCcCCCCCCEeeCCCCCCCCcccc------ccchhccCCCCCcEEeCCCCcCCCccc
Q 001547 56 GRVIGLYLSETYSGEYWY-LNASLFTPFQQLESLDLSWNNIAGCAEN------EGLERLSRLSKLKKLDLRGNLCNNSIL 128 (1056)
Q Consensus 56 ~~v~~l~l~~~~~~~~~~-~~~~~f~~l~~L~~L~Ls~~~~~~~~~~------~~l~~l~~l~~L~~L~Ls~n~~~~~~~ 128 (1056)
..++++||||+.++..-. --...+++-++|++.++|.-........ ..+.++-++++|+..+||+|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 458999999997653311 0122356678999999997644333221 123567799999999999999987766
Q ss_pred hh----hcCCCCCcEEecCCCcccCccChhh-------------hcCCCCCceEeCCCCCCCccccccc---ccccccee
Q 001547 129 SS----VARLSSLTSLHLSHNILQGSIDAKE-------------FDSLSNLEELDINDNEIDNVEVSRG---YRGLRKLK 188 (1056)
Q Consensus 129 ~~----l~~l~~L~~L~Ls~n~l~~~i~~~~-------------l~~L~~L~~L~Ls~n~l~~~~~~~~---~~~~~~l~ 188 (1056)
+. |++-+.|+||.+++|.+. .+.-.. ..+-|.|++.+...|.+........ +....+++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 54 567899999999999874 433222 2346889999999998765543222 23334666
Q ss_pred ecCCCCCccccc--cchh-hhcCCCCCCcEEecCCCCCCCccc--ccccccCCCcccEEecCCCCCCcchhhhhhh----
Q 001547 189 SLDLSGVGIRDG--NKLL-QSMGSFPSLNTLHLESNNFTATLT--TTQELHNFTNLEYLTLDDSSLHISLLQSIGS---- 259 (1056)
Q Consensus 189 ~L~L~~~~~~~~--~~~~-~~l~~l~~L~~L~L~~n~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~---- 259 (1056)
.+.+..+++..- ...+ ..+..+++|+.|||..|.++-.-. ....+..-+.|++|.+..|-++......+..
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 666666666532 2222 145666777777777777653211 1123333445777777777655443332221
Q ss_pred -cCCCCcEEeccCccccCcccCC------CCCcccccceecchhhhhcc
Q 001547 260 -IFPSLKNLSMSGCEVNGVLSGQ------GFPHFKSLEHLDMRFARIAL 301 (1056)
Q Consensus 260 -~l~~L~~L~L~~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~ 301 (1056)
..|+|..|-..+|...+.+-.. .-.+++-|..+.+.+|++..
T Consensus 269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 2466677766666544332211 11234445555555555443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.1e-06 Score=88.30 Aligned_cols=115 Identities=28% Similarity=0.403 Sum_probs=67.1
Q ss_pred hcCCCCCcEEecCCCcccCccChhhh-cCCCCCceEeCCCCCCCccccccccccccceeecCCCCCccccccchhhhcCC
Q 001547 131 VARLSSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGS 209 (1056)
Q Consensus 131 l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~l~~ 209 (1056)
+.....++.|-+.++.+...-....| ...+.+++|||.+|.++ ++++....+..
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-------------------------dWseI~~ile~ 95 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-------------------------DWSEIGAILEQ 95 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-------------------------cHHHHHHHHhc
Confidence 33344455555555555422222223 23455666666655554 33344455777
Q ss_pred CCCCcEEecCCCCCCCcccccccc-cCCCcccEEecCCCCCCcchhhhhhhcCCCCcEEeccCcc
Q 001547 210 FPSLNTLHLESNNFTATLTTTQEL-HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE 273 (1056)
Q Consensus 210 l~~L~~L~L~~n~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~l~~~l~~L~~L~L~~~~ 273 (1056)
+|.|+.|+|+.|.+...+. .+ .+.++|+.|-|.+..+.=.-..++...+|.+++|.++.|.
T Consensus 96 lP~l~~LNls~N~L~s~I~---~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLSSDIK---SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred CccceEeeccCCcCCCccc---cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 8888888888888876654 22 4677888888887766433333333337777777777773
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=2.9e-08 Score=110.85 Aligned_cols=111 Identities=24% Similarity=0.228 Sum_probs=70.2
Q ss_pred cCCCCCCCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCC
Q 001547 336 QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 415 (1056)
Q Consensus 336 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l 415 (1056)
.++.-++.|+.|+|++|+++... .+..|++|++|||++|.+. .+|.-....+. |+.|.+++|.++. ...+.++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L~gie~L 253 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---LRGIENL 253 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---hhhHHhh
Confidence 35556677778888888776543 5677778888888888776 55444444455 7777777777652 2345677
Q ss_pred CCccEEeccCccccccccccCCCCCccceeEEEccCCCC
Q 001547 416 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYG 454 (1056)
Q Consensus 416 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 454 (1056)
++|+.||++.|-+.+... ...+..+..|+.|.+.+|+.
T Consensus 254 ksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcc
Confidence 777777777777664322 12223344566667766643
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=7.8e-08 Score=85.19 Aligned_cols=87 Identities=21% Similarity=0.322 Sum_probs=50.5
Q ss_pred ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcc
Q 001547 860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 939 (1056)
Q Consensus 860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls 939 (1056)
.++.|+|++|+++ .+|+++..++.|+.||++.|.+. ..|..+..+.+|..||..+|.+. +||..+..-+.....++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 4556666666666 56666777777777777777666 55666666666666666666665 455443322333333444
Q ss_pred cCcccccCCC
Q 001547 940 YNNLSGKIPE 949 (1056)
Q Consensus 940 ~N~l~g~ip~ 949 (1056)
++++.+..|.
T Consensus 155 nepl~~~~~~ 164 (177)
T KOG4579|consen 155 NEPLGDETKK 164 (177)
T ss_pred CCcccccCcc
Confidence 4445444443
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.11 E-value=1.8e-07 Score=98.57 Aligned_cols=217 Identities=19% Similarity=0.142 Sum_probs=119.2
Q ss_pred CCCCCcEEecCCCCCCCcccccccccCCCcccEEecCCCCC-CcchhhhhhhcCCCCcEEeccCccccCccc-CCCCCcc
Q 001547 209 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLS-GQGFPHF 286 (1056)
Q Consensus 209 ~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~-~~~~~~l 286 (1056)
.+++|++|+++||.-...--......+++.++.+.+.+|.- .......+....+-+.++++..|....... ...-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 45566666666664322211112334555566665555531 111222222224445556655653222111 1111335
Q ss_pred cccceecchhhhhccccchhhhhcCCccccceeeccCCcCCCCCccccccCCCCCCCccEEEccCCccc--ccccccccC
Q 001547 287 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR--GSLPWCLAN 364 (1056)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~ 364 (1056)
..|+.++.+.+.. ..........+.+++|+.+.++.++...... +..--.+.+.|+.+++..+... +.+...=.+
T Consensus 294 ~~lq~l~~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 294 HALQVLCYSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRG--FTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hHhhhhcccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhh--hhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 5666666665544 2233445566778888888888887432211 0001145778888988888632 222222346
Q ss_pred CCCCcEEECcCCcCcCcC----CCcccccCCCCcEEEccCCcccccCCcccccCCCCccEEeccCccc
Q 001547 365 TTSLRILDVSFNQLTGSI----SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 428 (1056)
Q Consensus 365 l~~L~~L~Ls~n~l~~~i----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 428 (1056)
++.|++|.+++|.....- ....-..+..|+.+.++++........+.+..++.|+.+++-.+.-
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 889999999888642110 0111234677899999999877666666778888888888776654
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=1.4e-07 Score=105.50 Aligned_cols=176 Identities=27% Similarity=0.226 Sum_probs=103.7
Q ss_pred ChhhhhcCCCCcEEEccCCcccccCCccccCC-CCCCEEEccCccCC----------CccchHHhhcCCCCCEEEccCCc
Q 001547 533 PVEIGDILPSLVYFNISMNALDGSIPSSFGNV-IFLQFLDLSNNKLT----------GEIPDHLAMCCVNLEFLSLSNNS 601 (1056)
Q Consensus 533 p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~----------~~i~~~~~~~l~~L~~L~L~~n~ 601 (1056)
|..++. +.+|+.|.+.++.+.. ...+..+ ..|++|.- .|.+. |++.... ..-.|...+.+.|.
T Consensus 102 pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNR 175 (1096)
T ss_pred Cceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch--hhhhHhhhhcchhh
Confidence 556665 7888888888887752 1111111 12222221 11111 1121111 12346667777777
Q ss_pred CCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCc-cccCCCCCcEEEcCCCcccCCCcc
Q 001547 602 LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPV 680 (1056)
Q Consensus 602 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~p~ 680 (1056)
+. ....++.-++.|+.|+|++|+++..- .+..|++|++|||++|.+. .+|. ....+. |+.|.+++|.++.. .
T Consensus 176 L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~ 248 (1096)
T KOG1859|consen 176 LV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--R 248 (1096)
T ss_pred HH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--h
Confidence 76 34456666778888888888887442 6777888888888888876 3333 333444 88888888877632 3
Q ss_pred cccCCCCCcEEEcccCcCcccCCC--CCCCCcccEEEcCCccc
Q 001547 681 EFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQVHLSKNML 721 (1056)
Q Consensus 681 ~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~~~L~~L~l~~n~~ 721 (1056)
.+.++.+|+.||+++|-+.+.-.- ......|+.|+|.+|.+
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 466778888888888876643211 11234666677777654
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=1.3e-05 Score=95.41 Aligned_cols=160 Identities=20% Similarity=0.311 Sum_probs=113.9
Q ss_pred CCCCcEEeCCCCcC-CCccchhhcC-CCCCcEEecCCCcccCccChhhhcCCCCCceEeCCCCCCCccccccccccccce
Q 001547 110 LSKLKKLDLRGNLC-NNSILSSVAR-LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 187 (1056)
Q Consensus 110 l~~L~~L~Ls~n~~-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~i~~~~l~~L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 187 (1056)
-.+|++||+++... ....|..++. ||+|++|.+++-.+...--.....++++|+.||+|+++++.. ...+.+++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccH
Confidence 45789999988653 3334555654 899999999887665321122457889999999999888765 456678888
Q ss_pred eecCCCCCccccccchhhhcCCCCCCcEEecCCCCCCCcccc----cccccCCCcccEEecCCCCCCcchhhhhhhcCCC
Q 001547 188 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT----TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPS 263 (1056)
Q Consensus 188 ~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~l~~ 263 (1056)
+.|.+.+..+..... +..+..+++|+.||+|.......... .+.-..+++|+.||.+++.+.....+.+-+..|+
T Consensus 198 q~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 888888887766433 34577899999999998766543210 1233458899999999999888888777766788
Q ss_pred CcEEeccCcc
Q 001547 264 LKNLSMSGCE 273 (1056)
Q Consensus 264 L~~L~L~~~~ 273 (1056)
|+.+..-+|.
T Consensus 277 L~~i~~~~~~ 286 (699)
T KOG3665|consen 277 LQQIAALDCL 286 (699)
T ss_pred Hhhhhhhhhh
Confidence 8877765543
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=1.7e-06 Score=76.85 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=37.5
Q ss_pred ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccC
Q 001547 860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 929 (1056)
Q Consensus 860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~ 929 (1056)
.|+.|+++.|.+. ..|..+..|.++..|+..+|.+. .||..+---+.....++.++.+.+.-|..+..
T Consensus 101 aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 101 ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 4566666666665 45555555666666666666665 34433222233334455666776666654443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=5.6e-05 Score=82.61 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=30.4
Q ss_pred CcCCEEeCCCccCcccccccccCCCCCCEEEccCcc------CcccCCccccCCCCCCeEEcccCc
Q 001547 883 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK------LSGKIPRQLVDLNTLAIFIVAYNN 942 (1056)
Q Consensus 883 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~------l~~~ip~~l~~l~~L~~l~ls~N~ 942 (1056)
++|+.|++++|... ..|..+. .+|+.|+++.|. -.+.+|+.+ .+....++.++.+.
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHH
Confidence 46777777777655 3444443 467777777663 122455554 44444444444433
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=2.8e-05 Score=56.22 Aligned_cols=36 Identities=42% Similarity=0.699 Sum_probs=16.9
Q ss_pred cCCEEeCCCccCcccccccccCCCCCCEEEccCccCc
Q 001547 884 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920 (1056)
Q Consensus 884 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 920 (1056)
+|++|++++|+|+ .+|..++++++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 33334555555555555555544
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=4.2e-05 Score=55.28 Aligned_cols=37 Identities=43% Similarity=0.742 Sum_probs=32.4
Q ss_pred ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcc
Q 001547 860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 897 (1056)
Q Consensus 860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 897 (1056)
+|++|++++|+++ .+|+.++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 6899999999999 678789999999999999999994
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=4.2e-05 Score=91.28 Aligned_cols=84 Identities=19% Similarity=0.339 Sum_probs=42.2
Q ss_pred CCCcEEecCCCCCCCcccccccccCCCcccEEecCCCCCCcchhhhhhhcCCCCcEEeccCccccCcccCCCCCcccccc
Q 001547 211 PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 290 (1056)
Q Consensus 211 ~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 290 (1056)
.+|++|++++........+..--..+|+|+.|.+++-.+.......+...+|+|..||++++++... .++.++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 4566666666443322111111223566666666665554444444444466666666666655432 3455555555
Q ss_pred eecchhh
Q 001547 291 HLDMRFA 297 (1056)
Q Consensus 291 ~L~l~~~ 297 (1056)
.|.+++.
T Consensus 199 ~L~mrnL 205 (699)
T KOG3665|consen 199 VLSMRNL 205 (699)
T ss_pred HHhccCC
Confidence 5554433
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.44 E-value=0.00057 Score=74.93 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=14.8
Q ss_pred CCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCC
Q 001547 638 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 672 (1056)
Q Consensus 638 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 672 (1056)
++|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35555655555543 2232222 35555555443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00033 Score=67.33 Aligned_cols=87 Identities=28% Similarity=0.295 Sum_probs=59.4
Q ss_pred hcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccc-cccccCCccc
Q 001547 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI-FSRIFSLRNL 616 (1056)
Q Consensus 538 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L 616 (1056)
....+...+|+++|.+.. -..|..++.|.+|.+++|+|+ .|...+...+++|+.|.+.+|.+.... -..+..+|.|
T Consensus 39 ~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 39 ATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred ccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 335677888888888762 234677888888999999888 676666667788888888888775321 1234455566
Q ss_pred cceeccccccc
Q 001547 617 RWLLLEGNHFV 627 (1056)
Q Consensus 617 ~~L~l~~n~~~ 627 (1056)
++|.+-+|.++
T Consensus 116 ~~Ltll~Npv~ 126 (233)
T KOG1644|consen 116 EYLTLLGNPVE 126 (233)
T ss_pred ceeeecCCchh
Confidence 66666666554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.12 E-value=0.00084 Score=62.95 Aligned_cols=108 Identities=21% Similarity=0.212 Sum_probs=38.3
Q ss_pred chHHhhcCCCCcEEecCCCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccC
Q 001547 484 PNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN 563 (1056)
Q Consensus 484 p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 563 (1056)
+...+.++++|+.+.+.. .+.......+..++.++.+.+.++ +. .++...+..+++++.+.+.. .+.......|..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence 333445555555555543 333333444445545555555443 32 34444444344455555543 222223334444
Q ss_pred CCCCCEEEccCccCCCccchHHhhcCCCCCEEEcc
Q 001547 564 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 598 (1056)
Q Consensus 564 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 598 (1056)
+++|+.+++..+ +. .++...+..+ +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 444555544433 22 3333333333 44444443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.11 E-value=0.00085 Score=64.55 Aligned_cols=66 Identities=24% Similarity=0.222 Sum_probs=31.0
Q ss_pred CCCCCCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcc
Q 001547 338 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403 (1056)
Q Consensus 338 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 403 (1056)
|..+++|.+|.+++|+|+..-|.--.-+++|+.|.+.+|.+..--.-..+..+|+|++|.+-+|+.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 334455555555555555444433333445555555555443111123344455555555555544
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.09 E-value=0.0009 Score=62.72 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=28.8
Q ss_pred CCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccce
Q 001547 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 619 (1056)
Q Consensus 540 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 619 (1056)
+++|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+..+++++.+.+.+ .+.......|..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 44455555442 333334444555555555555443 33 44444444444455555543 2222222333344444444
Q ss_pred ecc
Q 001547 620 LLE 622 (1056)
Q Consensus 620 ~l~ 622 (1056)
++.
T Consensus 87 ~~~ 89 (129)
T PF13306_consen 87 DIP 89 (129)
T ss_dssp EET
T ss_pred ccC
Confidence 443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00051 Score=69.15 Aligned_cols=88 Identities=26% Similarity=0.373 Sum_probs=59.2
Q ss_pred CCCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCC--cCCCccchhhcCCCCCcEEecCCCcccCccChhhhcC
Q 001547 81 PFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN--LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS 158 (1056)
Q Consensus 81 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~ 158 (1056)
.+..|+.|++.+..++... .+-.|++|++|++|.| .+.+.++.....+++|++|++++|++.-.-....+..
T Consensus 41 ~~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 4556666666666555433 2557888888888888 5566666666667888888888888762111224567
Q ss_pred CCCCceEeCCCCCCCc
Q 001547 159 LSNLEELDINDNEIDN 174 (1056)
Q Consensus 159 L~~L~~L~Ls~n~l~~ 174 (1056)
+.+|..||+.+|..+.
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 7778888888776554
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.74 E-value=0.00029 Score=83.42 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=38.2
Q ss_pred CCCcccEEecCCCC-CCcchhhhhhhcCCCCcEEeccCcc-ccCcccCCCCCcccccceecchhhhhccccchhhhhcCC
Q 001547 235 NFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES 312 (1056)
Q Consensus 235 ~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (1056)
.+++|+.|+++.+. +++.....++..+++|++|.+.+|. ++..--......+++|++|+++++....+...... ...
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~ 319 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKN 319 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHh
Confidence 34555555555555 4444444444445555555555554 22211111223445555555555444322222222 333
Q ss_pred ccccceee
Q 001547 313 MPSLKYLS 320 (1056)
Q Consensus 313 ~~~L~~L~ 320 (1056)
+++++.+.
T Consensus 320 c~~l~~l~ 327 (482)
T KOG1947|consen 320 CPNLRELK 327 (482)
T ss_pred Ccchhhhh
Confidence 55554443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00063 Score=80.54 Aligned_cols=169 Identities=22% Similarity=0.207 Sum_probs=72.0
Q ss_pred CCCCcEEecCCCC-CCCcccccccccCCCcccEEecCCCCCC-cchhhhhhhcCCCCcEEeccCccccCcccCCCCCccc
Q 001547 210 FPSLNTLHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLH-ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFK 287 (1056)
Q Consensus 210 l~~L~~L~L~~n~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 287 (1056)
+++|++|.+.+|. ++.. ........+++|++|++++|... +.....+...+++|+.|.+..... ++
T Consensus 268 c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-----------c~ 335 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-----------CP 335 (482)
T ss_pred CCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----------Cc
Confidence 5566666655555 2221 11123344566777777666532 222222233256666554433321 22
Q ss_pred ccceecchhhhhccccchhhhhcCCccccceeeccCCcCCCCCccccccCCCCCCCccEEEccCCcccccccccccCCCC
Q 001547 288 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 367 (1056)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 367 (1056)
.++.+.+..................++.++.+.+..+.....+. ...+..+++|+ ..+ .........
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~l~gc~~l~-~~l---------~~~~~~~~~ 402 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL---ELSLRGCPNLT-ESL---------ELRLCRSDS 402 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch---HHHhcCCcccc-hHH---------HHHhccCCc
Confidence 33333332221111012333444566666666666665322211 01122333331 111 111222233
Q ss_pred CcEEECcCCcCcCcC-CCccccc-CCCCcEEEccCCccc
Q 001547 368 LRILDVSFNQLTGSI-SSSPLVH-LTSIEELRLSNNHFR 404 (1056)
Q Consensus 368 L~~L~Ls~n~l~~~i-~~~~~~~-l~~L~~L~L~~n~l~ 404 (1056)
++.|+++.+... +. .-..... +..++.+++.++...
T Consensus 403 l~~L~l~~~~~~-t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLV-TDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccc-cccchHHHhhhhhccccCCccCcccc
Confidence 777777777643 11 0111111 556677777766543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.0017 Score=65.43 Aligned_cols=87 Identities=23% Similarity=0.327 Sum_probs=41.9
Q ss_pred ccCCCcccEEecCCC--CCCcchhhhhhhcCCCCcEEeccCccccCcccCCCCCcccccceecchhhhhccccchhhhhc
Q 001547 233 LHNFTNLEYLTLDDS--SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG 310 (1056)
Q Consensus 233 l~~l~~L~~L~L~~~--~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 310 (1056)
+-.+++|++|.++.| ++.+.++..... +|+|++|++++|++...-....+..+++|..|++.+|......+.-..+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 334555555555555 333333333333 46666666666655432222234455556666666555544444433333
Q ss_pred CCccccceee
Q 001547 311 ESMPSLKYLS 320 (1056)
Q Consensus 311 ~~~~~L~~L~ 320 (1056)
.-+++|++|+
T Consensus 140 ~ll~~L~~LD 149 (260)
T KOG2739|consen 140 LLLPSLKYLD 149 (260)
T ss_pred HHhhhhcccc
Confidence 4444444443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.0025 Score=64.25 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=34.3
Q ss_pred CCcccEEecCCCCCCcchhhhhhhcCCCCcEEeccCccccCcccCCCCCcccccceecchhhhhc
Q 001547 236 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA 300 (1056)
Q Consensus 236 l~~L~~L~L~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 300 (1056)
+.+.++|+..+|.+++. ++...++.|++|.|+-|+++..-| +..+++|+.|+|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccc
Confidence 44556666666665542 222227778888887777665433 455555555555555543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0073 Score=36.16 Aligned_cols=18 Identities=56% Similarity=0.874 Sum_probs=7.8
Q ss_pred CCEEeCCCccCcccccccc
Q 001547 885 IQTLNLSHNNLTGTIPLTF 903 (1056)
Q Consensus 885 L~~L~Ls~N~l~~~~p~~~ 903 (1056)
|++|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.18 E-value=0.0081 Score=35.95 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=8.9
Q ss_pred CCEEEccCccCcccCCccc
Q 001547 909 IESLDLSYNKLSGKIPRQL 927 (1056)
Q Consensus 909 L~~LdLs~N~l~~~ip~~l 927 (1056)
|++|||++|+++ .+|.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444443
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.0021 Score=64.74 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=56.4
Q ss_pred CCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccC-hhhhcCCC
Q 001547 82 FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSID-AKEFDSLS 160 (1056)
Q Consensus 82 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~-~~~l~~L~ 160 (1056)
+.+.+.|++=+|+++.+.. ..+++.|++|.||-|.|+. ...+..+++|++|+|..|.|. .+. ..-+.+++
T Consensus 18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHHH------HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 3445556666666654442 4577788888888887764 334677788888888888776 333 23457788
Q ss_pred CCceEeCCCCCCCccc
Q 001547 161 NLEELDINDNEIDNVE 176 (1056)
Q Consensus 161 ~L~~L~Ls~n~l~~~~ 176 (1056)
+|+.|-|..|.-.+..
T Consensus 89 sLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEA 104 (388)
T ss_pred hhhhHhhccCCccccc
Confidence 8888888777654443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.46 E-value=0.00047 Score=78.83 Aligned_cols=60 Identities=32% Similarity=0.377 Sum_probs=34.0
Q ss_pred ccEEEccCCccccc----ccccccCCCCCcEEECcCCcCcCcCC----CcccccCCCCcEEEccCCccc
Q 001547 344 LQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTGSIS----SSPLVHLTSIEELRLSNNHFR 404 (1056)
Q Consensus 344 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~i~----~~~~~~l~~L~~L~L~~n~l~ 404 (1056)
+..+++..+.+.+. ++..+.....+..++++.|.....-. ...-.+. .++.+.++.|.++
T Consensus 378 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 378 LLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPIT 445 (478)
T ss_pred cchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhh
Confidence 55556655554442 33445666777777777776532210 1111233 7788888888765
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.05 E-value=0.0007 Score=77.43 Aligned_cols=90 Identities=26% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhc----CC-CCCcEEecCCCcccCccC---hhh
Q 001547 84 QLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA----RL-SSLTSLHLSHNILQGSID---AKE 155 (1056)
Q Consensus 84 ~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~i~---~~~ 155 (1056)
.++.|+|.+|.+..........++....+|..|++++|.+.+.....+. .. ..|++|++..|.+.+.-. ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777788888877666555556677778888888888877654333222 22 445667777766653311 123
Q ss_pred hcCCCCCceEeCCCCCCC
Q 001547 156 FDSLSNLEELDINDNEID 173 (1056)
Q Consensus 156 l~~L~~L~~L~Ls~n~l~ 173 (1056)
+.....++.+|++.|.+.
T Consensus 168 L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HhcccchhHHHHHhcccc
Confidence 444666677777666653
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.83 E-value=0.2 Score=27.73 Aligned_cols=11 Identities=55% Similarity=0.869 Sum_probs=3.7
Q ss_pred CCEEEccCccC
Q 001547 909 IESLDLSYNKL 919 (1056)
Q Consensus 909 L~~LdLs~N~l 919 (1056)
|+.|||++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.37 E-value=0.21 Score=27.65 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=5.3
Q ss_pred cCCEEeCCCccCc
Q 001547 884 RIQTLNLSHNNLT 896 (1056)
Q Consensus 884 ~L~~L~Ls~N~l~ 896 (1056)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.47 E-value=0.015 Score=57.21 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=60.6
Q ss_pred ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcc
Q 001547 860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 939 (1056)
Q Consensus 860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls 939 (1056)
..+.||++.|++. .....|.-++.|..|++|.|.+. ..|..++++..+..+++..|.++ ..|.++..++.+.+++.-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4677888888776 44555667777777888888777 67777777777777777777777 677777777777777777
Q ss_pred cCccc
Q 001547 940 YNNLS 944 (1056)
Q Consensus 940 ~N~l~ 944 (1056)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 77653
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.66 E-value=0.12 Score=50.24 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=53.2
Q ss_pred CcEEecCCCCCCCcccccccccCCCcccEEecCCCC-CCcchhhhhhhcCCCCcEEeccCccccCcccCCCCCcccccce
Q 001547 213 LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 291 (1056)
Q Consensus 213 L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 291 (1056)
++.+|-+++.+..+-- +.+.+++.++.|.+.+|. +.+...+.++...++|+.|++++|.-...--...+.++++|+.
T Consensus 103 IeaVDAsds~I~~eGl--e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL--EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHH--HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4455555555544322 456667777777777775 3334445566667888888888886443333344567777877
Q ss_pred ecchhhhhcc
Q 001547 292 LDMRFARIAL 301 (1056)
Q Consensus 292 L~l~~~~~~~ 301 (1056)
|.+.+.....
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 7776655443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.50 E-value=0.62 Score=29.09 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=5.3
Q ss_pred cCCEEeCCCccCc
Q 001547 884 RIQTLNLSHNNLT 896 (1056)
Q Consensus 884 ~L~~L~Ls~N~l~ 896 (1056)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.50 E-value=0.62 Score=29.09 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=5.3
Q ss_pred cCCEEeCCCccCc
Q 001547 884 RIQTLNLSHNNLT 896 (1056)
Q Consensus 884 ~L~~L~Ls~N~l~ 896 (1056)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.76 E-value=0.054 Score=53.49 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=55.6
Q ss_pred hccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCc
Q 001547 857 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920 (1056)
Q Consensus 857 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 920 (1056)
+++.+..||+|.|++. ..|..++++..++.+++.+|+.+ ..|-+++..+.++.+++..|.+.
T Consensus 63 ~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 3557888999999998 78999999999999999999998 88999999999999999999875
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.22 E-value=0.89 Score=28.39 Aligned_cols=21 Identities=48% Similarity=0.718 Sum_probs=12.8
Q ss_pred CCCCEEEccCCcCcccCCccc
Q 001547 782 NQLQLLDLSDNNLHGLIPSCF 802 (1056)
Q Consensus 782 ~~L~~L~Ls~N~l~~~~p~~~ 802 (1056)
++|+.|+|++|+++...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665555444
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.22 E-value=0.89 Score=28.39 Aligned_cols=21 Identities=48% Similarity=0.718 Sum_probs=12.8
Q ss_pred CCCCEEEccCCcCcccCCccc
Q 001547 782 NQLQLLDLSDNNLHGLIPSCF 802 (1056)
Q Consensus 782 ~~L~~L~Ls~N~l~~~~p~~~ 802 (1056)
++|+.|+|++|+++...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665555444
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.39 E-value=0.36 Score=47.15 Aligned_cols=80 Identities=29% Similarity=0.274 Sum_probs=41.8
Q ss_pred CCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCc-CCCccchhhcC-CCCCcEEecCCCcccCccChhhhcCCCCC
Q 001547 85 LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNL-CNNSILSSVAR-LSSLTSLHLSHNILQGSIDAKEFDSLSNL 162 (1056)
Q Consensus 85 L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~-~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~i~~~~l~~L~~L 162 (1056)
++.+|=+++.|.. +|++-+..++.++.|.+.+|. +.+.....++. .++|+.|+|++|.-..+-....+..+++|
T Consensus 103 IeaVDAsds~I~~----eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDASDSSIMY----EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred EEEEecCCchHHH----HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 3444444444432 334566667777777776664 22223333333 46777777776652212222345566666
Q ss_pred ceEeCC
Q 001547 163 EELDIN 168 (1056)
Q Consensus 163 ~~L~Ls 168 (1056)
+.|.+.
T Consensus 179 r~L~l~ 184 (221)
T KOG3864|consen 179 RRLHLY 184 (221)
T ss_pred HHHHhc
Confidence 666654
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.79 E-value=0.96 Score=27.60 Aligned_cols=14 Identities=50% Similarity=0.584 Sum_probs=5.6
Q ss_pred CccEEEccCccCCc
Q 001547 735 SLVTLDLSYNYLNG 748 (1056)
Q Consensus 735 ~L~~L~L~~n~l~~ 748 (1056)
+|+.|+|++|+|++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 44444554444443
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.73 E-value=1.4 Score=26.92 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=8.9
Q ss_pred CcccEEecCCCCCCcchhhh
Q 001547 237 TNLEYLTLDDSSLHISLLQS 256 (1056)
Q Consensus 237 ~~L~~L~L~~~~~~~~~~~~ 256 (1056)
++|++|++++|.+++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34555555555554444433
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.78 E-value=20 Score=40.20 Aligned_cols=110 Identities=18% Similarity=0.015 Sum_probs=59.2
Q ss_pred CceEEEeccccccC--CccccccccCcCCCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcC
Q 001547 56 GRVIGLYLSETYSG--EYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133 (1056)
Q Consensus 56 ~~v~~l~l~~~~~~--~~~~~~~~~f~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~ 133 (1056)
.|...+|++-+.+. ..+.+....+. +.++.|..+........ .=+.=..+.++||+.|...+.+|..+..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p-------l~lr~c~lsskfis~l~-~qsg~~~lteldls~n~~Kddip~~~n~ 236 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP-------LSLRVCELSSKFISKLL-IQSGRLWLTELDLSTNGGKDDIPRTLNK 236 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc-------cchhhhhhhhhHHHHhh-hhhccccccccccccCCCCccchhHHHH
Confidence 45677888877443 22333333332 44555544432221100 0012235778888888877777765543
Q ss_pred ---CCCCcEEecCCCcccCc--cChhhhcCCCCCceEeCCCCCCC
Q 001547 134 ---LSSLTSLHLSHNILQGS--IDAKEFDSLSNLEELDINDNEID 173 (1056)
Q Consensus 134 ---l~~L~~L~Ls~n~l~~~--i~~~~l~~L~~L~~L~Ls~n~l~ 173 (1056)
-.-+++++.+...+.-. ..+-..+.-+++++.+++.|..+
T Consensus 237 ~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 237 KAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 24577777776655422 12223455677888888877644
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.03 E-value=3.9 Score=25.59 Aligned_cols=15 Identities=53% Similarity=0.771 Sum_probs=10.4
Q ss_pred CCCCCEEEccCccCc
Q 001547 906 LRHIESLDLSYNKLS 920 (1056)
Q Consensus 906 l~~L~~LdLs~N~l~ 920 (1056)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.45 E-value=4.8 Score=25.14 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=6.9
Q ss_pred CCCEEEccCccCc
Q 001547 908 HIESLDLSYNKLS 920 (1056)
Q Consensus 908 ~L~~LdLs~N~l~ 920 (1056)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 91
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=62.53 E-value=2.2 Score=29.62 Aligned_cols=7 Identities=29% Similarity=0.638 Sum_probs=3.4
Q ss_pred chhhhHH
Q 001547 1023 NPYWRRR 1029 (1056)
Q Consensus 1023 ~~~~~~~ 1029 (1056)
..||||.
T Consensus 33 ~~~~rR~ 39 (40)
T PF08693_consen 33 FFWYRRK 39 (40)
T ss_pred heEEecc
Confidence 3355553
No 92
>PF15102 TMEM154: TMEM154 protein family
Probab=56.76 E-value=9.7 Score=35.29 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhhcchhhhH
Q 001547 1007 ISYVIVIFGIVVVLYVNPYWRR 1028 (1056)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~ 1028 (1056)
+.+++++++++++++++||||.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 4454545555555555556655
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.37 E-value=6 Score=25.24 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=5.9
Q ss_pred CCcEEeCCCCcCC
Q 001547 112 KLKKLDLRGNLCN 124 (1056)
Q Consensus 112 ~L~~L~Ls~n~~~ 124 (1056)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 94
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=50.96 E-value=7 Score=34.80 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhhhhcchhhhHHHHHHHHHH
Q 001547 1006 TISYVIVIFGIVVVLYVNPYWRRRWLYLVEMW 1037 (1056)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1056)
.+++.+++.+.++++++.+|.||+++-+.|..
T Consensus 106 il~il~~i~is~~~~~~yr~~r~~~~~~~~~~ 137 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTRRTKLPLQDMV 137 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeeecccCchhhcc
Confidence 34455555666677778889999888776654
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.47 E-value=95 Score=35.09 Aligned_cols=113 Identities=15% Similarity=0.032 Sum_probs=50.4
Q ss_pred CCCCcEEecCCCCCCCcccccccccCCCcccEEecCCCCCCcchhhhhhh--cCCCCcEEeccCccccCcccCCCC--Cc
Q 001547 210 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS--IFPSLKNLSMSGCEVNGVLSGQGF--PH 285 (1056)
Q Consensus 210 l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~--~l~~L~~L~L~~~~~~~~~~~~~~--~~ 285 (1056)
-+.+++++++.|.+....+..-.-...+ +.+..|..+..+...+.. .--.+++++++.|.....+|...- ..
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhh
Confidence 4556677777776655433110000111 445555544333322211 012467777777766665553210 11
Q ss_pred ccccceecchhhhhccccchhhhhcCCccccceeeccCCcC
Q 001547 286 FKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 326 (1056)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 326 (1056)
-..+++++.+...+..+..+-......-.++...+++.+..
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 12355555555444433333333333334455555555443
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.33 E-value=12 Score=33.89 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=9.7
Q ss_pred ehhhHHHHHHHHHHHhhhhcc
Q 001547 1003 ITFTISYVIVIFGIVVVLYVN 1023 (1056)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~ 1023 (1056)
+.+++|+++++++++++++|.
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHH
Confidence 344445555554444444443
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.64 E-value=7.5 Score=53.15 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=31.4
Q ss_pred EccCccCcccCCccccCCCCCCeEEcccCcccccCC
Q 001547 913 DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 948 (1056)
Q Consensus 913 dLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip 948 (1056)
||++|+|+..-+..|..+.+|+.|+|++|++.|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 789999997777788889999999999999988665
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.95 E-value=19 Score=41.24 Aligned_cols=80 Identities=29% Similarity=0.358 Sum_probs=45.7
Q ss_pred cceeecCCCCCccccccchhhhcCCCCCCcEEecCCC--CCCCcccccccccC--CCcccEEecCCCCCCcchh------
Q 001547 185 RKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN--NFTATLTTTQELHN--FTNLEYLTLDDSSLHISLL------ 254 (1056)
Q Consensus 185 ~~l~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n--~~~~~~~~~~~l~~--l~~L~~L~L~~~~~~~~~~------ 254 (1056)
+.+..+.+++|...++.+...--..-|+|+.|+|++| .+... .++.+ ...|++|-+.+|++.....
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~----~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE----SELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch----hhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 3444555666666666555444455678888888887 33222 22332 2346777788887665433
Q ss_pred hhhhhcCCCCcEEe
Q 001547 255 QSIGSIFPSLKNLS 268 (1056)
Q Consensus 255 ~~l~~~l~~L~~L~ 268 (1056)
..+...+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 23333467776665
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.80 E-value=29 Score=39.82 Aligned_cols=83 Identities=25% Similarity=0.334 Sum_probs=43.7
Q ss_pred CCCcccEEecCCCCCCcc-hhhhhhhcCCCCcEEeccCc--cccCcccCCCCCc--ccccceecchhhhhccc----cch
Q 001547 235 NFTNLEYLTLDDSSLHIS-LLQSIGSIFPSLKNLSMSGC--EVNGVLSGQGFPH--FKSLEHLDMRFARIALN----TSF 305 (1056)
Q Consensus 235 ~l~~L~~L~L~~~~~~~~-~~~~l~~~l~~L~~L~L~~~--~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~----~~~ 305 (1056)
+.+.+..++|++|++... -..++....|+|+.|+|++| .+.... .+.+ ...|+.|-+.+|.++.. ...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~---el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES---ELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh---hhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 445556666666665331 22334444677777777777 222111 1222 23466777777766533 233
Q ss_pred hhhhcCCccccceee
Q 001547 306 LQIIGESMPSLKYLS 320 (1056)
Q Consensus 306 ~~~~~~~~~~L~~L~ 320 (1056)
...+.+.+|+|..|+
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 445556677666554
No 100
>PRK00523 hypothetical protein; Provisional
Probab=29.41 E-value=48 Score=26.65 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHhhhhcchhhhHHHHH
Q 001547 1004 TFTISYVIVIFGIVVVLYVNPYWRRRWLY 1032 (1056)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1056)
++++++++.++.+++.+|+.|++..+|+.
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666667777777776665
No 101
>PRK01844 hypothetical protein; Provisional
Probab=29.10 E-value=55 Score=26.30 Aligned_cols=28 Identities=11% Similarity=0.357 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHhhhhcchhhhHHHHH
Q 001547 1005 FTISYVIVIFGIVVVLYVNPYWRRRWLY 1032 (1056)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1056)
+++++++.++++++.+|+.|++..+|+.
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666776777666664
No 102
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.37 E-value=57 Score=20.17 Aligned_cols=9 Identities=33% Similarity=0.386 Sum_probs=3.4
Q ss_pred ccEEecCCC
Q 001547 239 LEYLTLDDS 247 (1056)
Q Consensus 239 L~~L~L~~~ 247 (1056)
|++|++++|
T Consensus 4 L~~L~l~~C 12 (26)
T smart00367 4 LRELDLSGC 12 (26)
T ss_pred CCEeCCCCC
Confidence 333333333
No 103
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.23 E-value=62 Score=30.42 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHHHhhhhcc
Q 001547 1004 TFTISYVIVIFGIVVVLYVN 1023 (1056)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~ 1023 (1056)
++++++.+++++++++++++
T Consensus 55 VVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 55 VVGVGGPILLGILALVFIFC 74 (154)
T ss_pred EecccHHHHHHHHHhheeEE
Confidence 34444444444333333333
No 104
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.20 E-value=44 Score=46.32 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=26.7
Q ss_pred EcCCCcccCCCchhccCCCcCCEEeCCCccCc
Q 001547 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 896 (1056)
Q Consensus 865 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 896 (1056)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68889998777777888889999999988776
Done!