Query 001547
Match_columns 1056
No_of_seqs 540 out of 5569
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 17:43:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001547.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_844-848//hhsearch_pdb/001547hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 715.2 51.7 736 14-981 6-753 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 563.7 43.9 662 112-972 51-721 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 476.2 49.7 594 83-948 25-626 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 466.9 50.2 610 86-981 7-636 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 451.3 42.5 339 541-995 266-607 (844)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 428.5 43.4 296 590-975 266-567 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 422.3 45.4 305 542-948 255-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 419.7 37.0 212 659-949 347-563 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 416.6 44.9 282 540-924 277-564 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 412.5 40.5 211 636-924 348-562 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=715.17 Aligned_cols=736 Identities=30% Similarity=0.438 Sum_probs=437.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 67677998999984010188999----99999963336046379989429993266556874323555686787998763
Q 001547 14 SEGCLDHERFALLRLKHFFTDPY----DKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLD 89 (1056)
Q Consensus 14 ~~~~~~~~~~~ll~~k~~~~~~~----~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 89 (1056)
++.+.++|++|||+||+++.||. |..++|||+|+||+|+ ++||+++|+++....+.....++.|..+++|+.++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 5668789999999999667896214687899987688413878--99278987789986775576696573168022467
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEC
Q ss_conf 8999889754454210013899985884789868996401--00289998599569984668669211059999866867
Q 001547 90 LSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILS--SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 167 (1056)
Q Consensus 90 Ls~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~--~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~L 167 (1056)
++.+.+...+ +.++.+++|++|++++|.+.+.+|. .++.+++|++|++++|.+.+.++...+.++++|++|++
T Consensus 84 ~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 84 LSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred CCCCCCCCCC-----HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 8688867870-----33245788998989898578707896787278899989896882677479778563889998989
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 8997886333223--34544302227789766543201110278899868825788778864442123588743199658
Q 001547 168 NDNEIDNVEVSRG--YRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 245 (1056)
Q Consensus 168 s~n~l~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~ 245 (1056)
++|.+.+..+..+ +..++.++.|+++++.+..... ...+++|++|++++|.+.+.++ . +.++++|++|+++
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--~-l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP--F-LGDCSALQHLDIS 231 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC--B-CTTCCSCCEEECC
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC----CCCCCCCCEEECCCCCCCCCCC--C-CCCCCCCCEEECC
T ss_conf 7983588587155664358988989897880346578----4547868989892882788771--1-1269999989794
Q ss_pred CCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHHHCCCCCHHHHHCCCCCCCCEEECCCCC
Q ss_conf 99898303454310189886894469635684458987765656232011213102520244403786654142025886
Q 001547 246 DSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 325 (1056)
Q Consensus 246 ~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 325 (1056)
+|.+.+..+..+.. +++|+.|++++|.+.+..|.
T Consensus 232 ~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~--------------------------------------------- 265 (768)
T 3rgz_A 232 GNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP--------------------------------------------- 265 (768)
T ss_dssp SSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCC---------------------------------------------
T ss_pred CCCCCCCCCHHHHC-CCCCCEEECCCCCCCCCCCC---------------------------------------------
T ss_conf 88587816577744-88889898988866571672---------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 7899864466677788876199855776556665000299-998699776884867689722226788758975587444
Q 001547 326 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT-TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404 (1056)
Q Consensus 326 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 404 (1056)
. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+ +..++.+++|++|++++|.+.
T Consensus 266 ------------~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 266 ------------L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp ------------C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEE
T ss_pred ------------C-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC-CHHHHCCCCCCEEECCCCCCC
T ss_conf ------------4-36878989791785577258888844686889989689677842-367755877667789788525
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 66784333478873098656863342225667877752101998457889998768000167840399947987857673
Q 001547 405 IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFP 484 (1056)
Q Consensus 405 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~p 484 (1056)
+.++...+.++++|+.+++++|.+.+ .+|
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~---------------------------------------------------~~p 360 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSG---------------------------------------------------ELP 360 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEE---------------------------------------------------CCC
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCCC---------------------------------------------------CCC
T ss_conf 73797887248888788484784376---------------------------------------------------230
Q ss_pred HHHHHCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH-CCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 47753299-7738855888676767689889988249991187488789825652-099995998547836645882245
Q 001547 485 NWLLENNT-KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD-ILPSLVYFNISMNALDGSIPSSFG 562 (1056)
Q Consensus 485 ~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~ 562 (1056)
..+. .++ +|+.|++++|.+ .+.++..+.. .+++|++|++++|.+.+..|..+.
T Consensus 361 ~~l~-~l~~~L~~L~Ls~N~l------------------------~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 361 ESLT-NLSASLLTLDLSSNNF------------------------SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp TTHH-HHTTTCSEEECCSSEE------------------------EEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHH-HHHCCCCEEECCCCCC------------------------CCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 9898-6322771998627874------------------------78767666533247761898977846542487775
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 88779799866764889663577634998979985477477435210247743350112363055558944559999949
Q 001547 563 NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 642 (1056)
Q Consensus 563 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 642 (1056)
.+++|+.|++++|++.+.+|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCCCCEEECCCCCCCCCCCHHH-HCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCE
T ss_conf 68987989895884668546777-44998898989788154718978828777329990199513758878816998998
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCC
Q ss_conf 987798689989722359999748986899455888300039998869983167575568987777-7404898478515
Q 001547 643 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP-LSIKQVHLSKNML 721 (1056)
Q Consensus 643 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~~L~~L~l~~n~~ 721 (1056)
|++++|++.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.. ..+..+.+
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~----- 569 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF----- 569 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST-----
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHC-----
T ss_conf 975399518968768856899998989789433748877708898998989888468827957860421223201-----
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 33257553469998659985374077555243333588889985887364447700018999889985278586447855
Q 001547 722 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 801 (1056)
Q Consensus 722 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 801 (1056)
....+...+.++.... ...... ..+ .+.+..+..+..++.++.++++.|.+.|.+|..
T Consensus 570 -----------~~~~~~~~~~~~~~~~-~~~~~~-----~~~-----~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 570 -----------IAGKRYVYIKNDGMKK-ECHGAG-----NLL-----EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp -----------TCSCEEEEEECCSCCT-TCCSSE-----EEE-----ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred -----------CCCCCCCCCCCCCCCC-CCCCCC-----CCC-----CCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf -----------3454211113444322-223322-----210-----013556323200232110011331004627433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCCCCHHCCC
Q ss_conf 35664222347999999997544345799996022121034310354210111000035673776898136779110039
Q 001547 802 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 881 (1056)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 881 (1056)
+..++ .|+.||+++|+++|.+|..++.
T Consensus 628 ~~~l~-----------------------------------------------------~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 628 FDNNG-----------------------------------------------------SMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp CSSSB-----------------------------------------------------CCCEEECCSSCCBSCCCGGGGG
T ss_pred HHCCC-----------------------------------------------------CCCEEECCCCCCCCCCCHHHHC
T ss_conf 40335-----------------------------------------------------6657978588015558778841
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77688776878648544652356999999898538607534781211898787687356746236997653458888556
Q 001547 882 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSS 961 (1056)
Q Consensus 882 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~ 961 (1056)
++.|+.|+|++|++++.+|..|+.+++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|. ..++.++...+
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~ 733 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAK 733 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGG
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC-CHHHCCCCHHH
T ss_conf 41578784868803887896784777899898978802386886775788789787968815560899-60102489777
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 67887888899989887677
Q 001547 962 YDGNPFLCGLPLPICRSLAT 981 (1056)
Q Consensus 962 ~~~n~~~c~~~l~~c~~~~~ 981 (1056)
|.|||.+||.|+..|.....
T Consensus 734 ~~gN~~Lcg~~l~~C~~~~~ 753 (768)
T 3rgz_A 734 FLNNPGLCGYPLPRCDPSNA 753 (768)
T ss_dssp GCSCTEEESTTSCCCCSCC-
T ss_pred HCCCCHHCCCCCCCCCCCCC
T ss_conf 56983210887767888766
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=563.70 Aligned_cols=662 Identities=29% Similarity=0.443 Sum_probs=356.0
Q ss_pred CCCEEECCCCCCCCC---CCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 985884789868996---40100289998599569984668669211059999866867899788633322334544302
Q 001547 112 KLKKLDLRGNLCNNS---ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 188 (1056)
Q Consensus 112 ~L~~L~Ls~n~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 188 (1056)
+++.|+++++.+.+. +++.+..+++|+.++++.+.+. .++. .++++++|++|++++|.+.+..+.
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~---------- 118 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTT---------- 118 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGG----------
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCH-HHCCCCCCCEEECCCCCCCCCCCC----------
T ss_conf 2789877899867755766965731680224678688867-8703-324578899898989857870789----------
Q ss_pred ECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHH---HHHCCCCCC
Q ss_conf 22778976654320111027889986882578877886444212358874319965899898303454---310189886
Q 001547 189 SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS---IGSIFPSLK 265 (1056)
Q Consensus 189 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---l~~~l~~L~ 265 (1056)
...++.+++|++|++++|.+.+..+. ..+.++++|++|++++|.+.+..+.. +.. +++|+
T Consensus 119 ---------------~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-l~~L~ 181 (768)
T 3rgz_A 119 ---------------LTSLGSCSGLKFLNVSSNTLDFPGKV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDG-CGELK 181 (768)
T ss_dssp ---------------GGGGGGCTTCCEEECCSSEEECCSSC-CSCCCCTTCSEEECCSSCCEEETHHHHHHTTC-CTTCC
T ss_pred ---------------HHHHHCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCCEEECCCCCCCCCCCHHHHHHCC-CCCCC
T ss_conf ---------------67872788999898968826774797-78563889998989798358858715566435-89889
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEECCHHHHHCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89446963568445898776565623201121310252024440378665414202588678998644666777888761
Q 001547 266 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 345 (1056)
Q Consensus 266 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 345 (1056)
+|++++|.+.+..+ +..+++|+
T Consensus 182 ~L~Ls~n~l~~~~~----------------------------------------------------------~~~l~~L~ 203 (768)
T 3rgz_A 182 HLAISGNKISGDVD----------------------------------------------------------VSRCVNLE 203 (768)
T ss_dssp EEECCSSEEESCCB----------------------------------------------------------CTTCTTCC
T ss_pred EEECCCCCCCCCCC----------------------------------------------------------CCCCCCCC
T ss_conf 89897880346578----------------------------------------------------------45478689
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 99855776556665000299998699776884867689722226788758975587444667843334788730986568
Q 001547 346 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 425 (1056)
Q Consensus 346 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 425 (1056)
+|++++|.+.+..|. ++.+++|++|++++|.+++.+ +..+..+++|++|++++|.+.+..+.. .+++|+.+++++
T Consensus 204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~ 278 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAE 278 (768)
T ss_dssp EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCS
T ss_pred EEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCC---CCCCCCEEECCC
T ss_conf 898928827887711-126999998979488587816-577744888898989888665716724---368789897917
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
Q ss_conf 63342225667877752101998457889998768000167840399947987857673477532997738855888676
Q 001547 426 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA 505 (1056)
Q Consensus 426 n~i~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~ 505 (1056)
|.+. +.+|.++...++
T Consensus 279 n~l~---------------------------------------------------~~ip~~~~~~~~------------- 294 (768)
T 3rgz_A 279 NKFT---------------------------------------------------GEIPDFLSGACD------------- 294 (768)
T ss_dssp SEEE---------------------------------------------------ESCCCCSCTTCT-------------
T ss_pred CCCC---------------------------------------------------CCCCHHHHHHCC-------------
T ss_conf 8557---------------------------------------------------725888884468-------------
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 7676898899882499911874887898256520999959985478366458822-458877979986676488966357
Q 001547 506 GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGEIPDH 584 (1056)
Q Consensus 506 ~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~ 584 (1056)
+|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+.+|..
T Consensus 295 -----------~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 295 -----------TLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp -----------TCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred -----------CCCEEECCCCCCCCCCCHHHHC-CCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf -----------6889989689677842367755-8776677897885257379788724888878848478437623098
Q ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 7634998979985477477435210247--74335011236305555894455999994998779868998972235999
Q 001547 585 LAMCCVNLEFLSLSNNSLKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 662 (1056)
Q Consensus 585 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 662 (1056)
+....++|+.|++++|.+.+..+..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|++.+..|..+..++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 98632277199862787478767666533247761898977846542487775689879898958846685467774499
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 97489868994558883000399988699831675755689877777404898478515332575534699986599853
Q 001547 663 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742 (1056)
Q Consensus 663 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls 742 (1056)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+. +.+|. .+..+++|+.|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-----------------------~~~p~-~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-----------------------GEIPS-GLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-----------------------SCCCG-GGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCC-----------------------CCCCH-HHHCCCCCCEEECC
T ss_conf 8898989788154718978828777329990199513-----------------------75887-88169989989753
Q ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 74077555243333588889985887364447700018999889985278586447855356642223479999999975
Q 001547 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK 822 (1056)
Q Consensus 743 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1056)
+|++++.+|.+++.+++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|..+............. ...+
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~--~~~~- 575 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA--GKRY- 575 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC--SCEE-
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCC--CCCC-
T ss_conf 9951896876885689999898978943374887770889899898988846882795786042122320134--5421-
Q ss_pred CCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 44345799996022121034310354210111000035673776898136779110039776887768786485446523
Q 001547 823 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLT 902 (1056)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 902 (1056)
.+........ ..........+ .+... .....+..+..++++.|.+.|.+|..+..+++|+.|+|++|++++.+|..
T Consensus 576 ~~~~~~~~~~-~~~~~~~~~~~--~~~~~-~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 576 VYIKNDGMKK-ECHGAGNLLEF--QGIRS-EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp EEEECCSCCT-TCCSSEEEEEC--TTCCG-GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred CCCCCCCCCC-CCCCCCCCCCC--CCCCC-HHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 1113444322-22332221001--35563-23200232110011331004627433403356657978588015558778
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5699999989853860753478121189878768735674623699765345888855667887888899
Q 001547 903 FSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 972 (1056)
Q Consensus 903 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 972 (1056)
|+.+++|+.|+|++|+++|.+|..+..++.|+.|++++|+++|.+|.....+..++..++++|+.....|
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 8414157878486880388789678477789989897880238688677578878978796881556089
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=476.22 Aligned_cols=594 Identities=22% Similarity=0.245 Sum_probs=311.0
Q ss_pred CCCCEEECCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
Q ss_conf 79987638999889754454210013899985884789868996401002899985995699846686692110599998
Q 001547 83 QQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNL 162 (1056)
Q Consensus 83 ~~L~~L~Ls~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L 162 (1056)
+++++|++++|.+++.++ ..++++++|++|++++|.+.+..+..++.+++|++|++++|.+. .+|...|+++++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCCEEECCCCCCCCCCH----HHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCC
T ss_conf 887688898997787597----88717876758878899648569778740667688889998567-5685453038888
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 66867899788633322334544302227789766543201110278899868825788778864442123588743199
Q 001547 163 EELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYL 242 (1056)
Q Consensus 163 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L 242 (1056)
++|++++|.+.+..+ ..++.+++|++|++++|.+.+..+ ..+.++++|++|
T Consensus 100 ~~L~L~~n~l~~~~~---------------------------~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L 150 (680)
T 1ziw_A 100 TELHLMSNSIQKIKN---------------------------NPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQEL 150 (680)
T ss_dssp SEEECCSSCCCCCCS---------------------------CTTTTCTTCCEEECCSSCCSCCCC--CSSSCCTTCCEE
T ss_pred CEEECCCCCCCCCCH---------------------------HHCCCCCCCCEEECCCCCCCCCCC--HHHCCCCCCCEE
T ss_conf 989898996685396---------------------------674156788889898995246672--111245567779
Q ss_pred ECCCCCCCCCHHHHHHH-CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHHHCCCCCHHHHHCCCCCCCCEEEC
Q ss_conf 65899898303454310-18988689446963568445898776565623201121310252024440378665414202
Q 001547 243 TLDDSSLHISLLQSIGS-IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSL 321 (1056)
Q Consensus 243 ~L~~~~~~~~~~~~l~~-~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 321 (1056)
++++|.+.+..+..+.. ..++|+.|++++|.+.+..+ ..+..+.+|+.+++..+.+...... .
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~--~------------- 214 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTE--K------------- 214 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHH--H-------------
T ss_pred ECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCHHHHH--H-------------
T ss_conf 74588436529788624466632179888982565581-5553223445543056646805677--7-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 5886789986446667778887619985577655666500029999--86997768848676897222267887589755
Q 001547 322 SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS--LRILDVSFNQLTGSISSSPLVHLTSIEELRLS 399 (1056)
Q Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~ 399 (1056)
.+..+ ..++|+.|++++|.+.+..|..|..++. |+.|++++|.+. .+++..+..+++|++|+++
T Consensus 215 ------------~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 215 ------------LCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ------------HHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred ------------HHHHH-HHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECC
T ss_conf ------------87775-315100887457743646866751467677888778788767-5680211674105685577
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 87444667843334788730986568633422256678777521019984578899987680001678403999479878
Q 001547 400 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 479 (1056)
Q Consensus 400 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~ 479 (1056)
+|.+.+ .....+..+++|+.++++++....
T Consensus 281 ~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~------------------------------------------------- 310 (680)
T 1ziw_A 281 YNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQ------------------------------------------------- 310 (680)
T ss_dssp SCCBSE-ECTTTTTTCTTCCEEECTTCBCCC-------------------------------------------------
T ss_pred CCCCCC-CCHHHHCCCCCCCEEECCCHHHHC-------------------------------------------------
T ss_conf 885676-586562678885577363313213-------------------------------------------------
Q ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC
Q ss_conf 57673477532997738855888676767689889988249991187488789825652099995998547836645882
Q 001547 480 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS 559 (1056)
Q Consensus 480 ~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~ 559 (1056)
.++ ...+. .++...+..+++|++|++++|.+.+..+.
T Consensus 311 --~~~----------------------------------------~~~lp-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 311 --SIS----------------------------------------LASLP-KIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp ------------------------------------------------CC-EECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred --CCC----------------------------------------CCCCC-CCCHHHCCCCCCCCEEECCCCCCCCCCHH
T ss_conf --333----------------------------------------35545-43865624677788887989826878855
Q ss_pred CCCCCCCCCEEECCCCCCCCC-CCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 245887797998667648896-6357763499897998547747743521024774335011236305555894455999
Q 001547 560 SFGNVIFLQFLDLSNNKLTGE-IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS 638 (1056)
Q Consensus 560 ~~~~l~~L~~L~L~~n~i~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 638 (1056)
.|..+++|+.|++++|.+... ++... +..+ ..+
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~------------------------f~~~----------------------~~~ 381 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNET------------------------FVSL----------------------AHS 381 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTT------------------------TGGG----------------------TTS
T ss_pred HHCCCCCCCEEECCCCCHHHHHCCHHH------------------------HCCC----------------------CCC
T ss_conf 740656872898879801443235322------------------------0245----------------------568
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 99499877986899897223599997489868994558883-00039998869983167575568987777740489847
Q 001547 639 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 717 (1056)
Q Consensus 639 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~ 717 (1056)
+|+.|++++|++.+..|..+..+++|+.|++++|.+.+.++ ..+.++++|+.|++++|.+.+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------------- 444 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ----------------- 444 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-----------------
T ss_pred CCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCE-----------------
T ss_conf 676688999977767754420778888886778757543575532575461278448997542-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCC
Q ss_conf 851533257553469998659985374077--555243333588889985887364447700018999889985278586
Q 001547 718 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795 (1056)
Q Consensus 718 ~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 795 (1056)
++...|..+++|+.|++++|.+. +..|..|..+++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus 445 -------~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 445 -------LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp -------CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred -------ECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf -------2764550075431011014644225667764555787899989999877679446345534688858899730
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCCC
Q ss_conf 44785535664222347999999997544345799996022121034310354210111000035673776898136779
Q 001547 796 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 875 (1056)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 875 (1056)
+..+..+..... .....+++|+.|++++|+++...
T Consensus 518 ~~~~~~~~~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 518 RLWKHANPGGPI---------------------------------------------YFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp GGGSTTSTTSCC---------------------------------------------CTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCHHHCCCCCC---------------------------------------------HHHCCCCCCCEEECCCCCCCCCC
T ss_conf 000000467741---------------------------------------------42337998888889999788779
Q ss_pred CHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCC
Q ss_conf 11003977688776878648544652356999999898538607534781211-89878768735674623699
Q 001547 876 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV-DLNTLAIFIVAYNNLSGKIP 948 (1056)
Q Consensus 876 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~l~ls~N~l~~~~p 948 (1056)
+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .++.|+.+++++|++.|.++
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 77734666752238999977767976837898888898999968705966830114665779831897025776
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=466.86 Aligned_cols=610 Identities=22% Similarity=0.239 Sum_probs=375.7
Q ss_pred CEEECCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf 87638999889754454210013899985884789868996401002899985995699846686692110599998668
Q 001547 86 ESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 165 (1056)
Q Consensus 86 ~~L~Ls~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L 165 (1056)
+.++.+++.++..+.. + .+++++|++++|.+....+..++.+++|++|++++|.+.+ +++..++++++|++|
T Consensus 7 ~~~~cs~~~L~~ip~~-----~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDD-----L--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVL 78 (680)
T ss_dssp SEEECCSSCCSSCCSC-----S--CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEE
T ss_pred CEEECCCCCCCCCCCC-----C--CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC-CCHHHHHCCCCCCEE
T ss_conf 7448777980526412-----4--8887688898997787597887178767588788996485-697787406676888
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 67899788633322334544302227789766543201110278899868825788778864442123588743199658
Q 001547 166 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 245 (1056)
Q Consensus 166 ~Ls~n~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~L~ 245 (1056)
++++|.+..... ..+..+++|++|++++|.+.+.
T Consensus 79 ~L~~n~l~~l~~---------------------------~~~~~l~~L~~L~L~~n~l~~~------------------- 112 (680)
T 1ziw_A 79 NLQHNELSQLSD---------------------------KTFAFCTNLTELHLMSNSIQKI------------------- 112 (680)
T ss_dssp ECCSSCCCCCCT---------------------------TTTTTCTTCSEEECCSSCCCCC-------------------
T ss_pred ECCCCCCCCCCH---------------------------HHHCCCCCCCEEECCCCCCCCC-------------------
T ss_conf 899985675685---------------------------4530388889898989966853-------------------
Q ss_pred CCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHHHCCCCCHHHHHCCCCCCCCEEECCCCC
Q ss_conf 99898303454310189886894469635684458987765656232011213102520244403786654142025886
Q 001547 246 DSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 325 (1056)
Q Consensus 246 ~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 325 (1056)
.+..++. +++|++|++++|.+.+..+
T Consensus 113 -------~~~~~~~-l~~L~~L~Ls~n~l~~~~~---------------------------------------------- 138 (680)
T 1ziw_A 113 -------KNNPFVK-QKNLITLDLSHNGLSSTKL---------------------------------------------- 138 (680)
T ss_dssp -------CSCTTTT-CTTCCEEECCSSCCSCCCC----------------------------------------------
T ss_pred -------CHHHCCC-CCCCCEEECCCCCCCCCCC----------------------------------------------
T ss_conf -------9667415-6788889898995246672----------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 78998644666777888761998557765566650002--9999869977688486768972222678875897558744
Q 001547 326 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA--NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403 (1056)
Q Consensus 326 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l 403 (1056)
..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+ +++..+..+++|+.+++.++.+
T Consensus 139 ----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 139 ----------GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp ----------CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCC
T ss_pred ----------HHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCC-CCHHHHHHHHHHHHHHCCCCCC
T ss_conf ----------11124556777974588436529788624466632179888982565-5815553223445543056646
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 46678433347887309865686334222566787775210199845788999876800016784039994798785767
Q 001547 404 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEF 483 (1056)
Q Consensus 404 ~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 483 (1056)
..... . .+
T Consensus 208 ~~~~~-~-----------------------------------------------------------------------~~ 215 (680)
T 1ziw_A 208 GPSLT-E-----------------------------------------------------------------------KL 215 (680)
T ss_dssp HHHHH-H-----------------------------------------------------------------------HH
T ss_pred CHHHH-H-----------------------------------------------------------------------HH
T ss_conf 80567-7-----------------------------------------------------------------------78
Q ss_pred CHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 347753299773885588867676768988998--824999118748878982565209999599854783664588224
Q 001547 484 PNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK--RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 561 (1056)
Q Consensus 484 p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 561 (1056)
+.. ...++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+
T Consensus 216 ~~~--l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 216 CLE--LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp HHH--HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTT
T ss_pred HHH--HHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 777--53151008874577436468667514676778887787887675680211-674105685577885676586562
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58877979986676488966357763499897998547747743521024774335011236305555894455999994
Q 001547 562 GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK 641 (1056)
Q Consensus 562 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 641 (1056)
..+++|+.|++++|...+.++.. .+.......+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~----------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 356 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLA----------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356 (680)
T ss_dssp TTCTTCCEEECTTCBCCC----------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCC
T ss_pred CCCCCCCEEECCCHHHHCCCCCC----------------CCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 67888557736331321333335----------------54543865624677788887989826878855740656872
Q ss_pred EEECCCCCCCCCC--CCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 9987798689989--722359--999748986899455888300039998869983167575568987777740489847
Q 001547 642 GLYLNNNNLSGKI--PRWLGN--LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 717 (1056)
Q Consensus 642 ~L~L~~n~l~~~~--~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~ 717 (1056)
.|++++|.+.... ...+.. .+.|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------ 418 (680)
T 1ziw_A 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG------------------ 418 (680)
T ss_dssp EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE------------------
T ss_pred EEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCC------------------
T ss_conf 89887980144323532202455686766889999777677544207788888867787575------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC--CCCCHHCCCCCCCCEEECCCCCCC
Q ss_conf 851533257553469998659985374077555243333588889985887364--447700018999889985278586
Q 001547 718 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSDNNLH 795 (1056)
Q Consensus 718 ~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~ 795 (1056)
+.++...|.++++|+.|++++|++.+..+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++|.++
T Consensus 419 -----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 419 -----QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp -----EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred -----CCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf -----435755325754612784489975422764550075431011014644225667764555787899989999877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCCC
Q ss_conf 44785535664222347999999997544345799996022121034310354210111000035673776898136779
Q 001547 796 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 875 (1056)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 875 (1056)
+..+..|.+++ +|+.|++++|++++..
T Consensus 494 ~i~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 494 NINDDMLEGLE-----------------------------------------------------KLEILDLQHNNLARLW 520 (680)
T ss_dssp CCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCCGGGG
T ss_pred CCCHHHHCCCC-----------------------------------------------------CCCEEECCCCCCCCCC
T ss_conf 67944634553-----------------------------------------------------4688858899730000
Q ss_pred C--------HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 1--------10039776887768786485446523569999998985386075347812118987876873567462369
Q 001547 876 P--------PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 947 (1056)
Q Consensus 876 p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~ 947 (1056)
+ ..|..+++|+.|+|++|+++.+.+..|.++++|+.|++++|++++..+..+..++.|+.+++++|.+++..
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred HHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 00046774142337998888889999788779777346667522389999777679768378988888989999687059
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 97653-458888556678878888999-89887677
Q 001547 948 PEWTA-QFATFNKSSYDGNPFLCGLPL-PICRSLAT 981 (1056)
Q Consensus 948 p~~~~-~~~~~~~~~~~~n~~~c~~~l-~~c~~~~~ 981 (1056)
|.... .+..+....+.+||+.|+|++ .|...|..
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 668301146657798318970257766899999987
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=451.30 Aligned_cols=339 Identities=21% Similarity=0.151 Sum_probs=202.6
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99959985478366458822458877979986676488966357763499897998547747743521024774335011
Q 001547 541 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 620 (1056)
Q Consensus 541 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 620 (1056)
++++.|++++|.+.+..+..|..+++|+.|++++|.+. +..+..|..+++|+.|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-------------------------~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-------------------------KIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-------------------------EECTTTTTTCSSCCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-------------------------CCCHHHHCCCCCCCEEE
T ss_conf 78618989799455158634525899999989798189-------------------------87968836888999898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 23630555589445599999499877986899897223599997489868994558883000399988699831675755
Q 001547 621 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 700 (1056)
Q Consensus 621 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 700 (1056)
+++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+. ..+++|+.+++++|++.
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~- 394 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV- 394 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCC-
T ss_conf 989978851878846899999898989987762866613788899988989977861-----68898232005899723-
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCH-HC
Q ss_conf 68987777740489847851533257553469998659985374077555-24333358888998588736444770-00
Q 001547 701 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI-PDWIDGLSQLSHLNLAHNNLEGEVPI-QL 778 (1056)
Q Consensus 701 ~~~~~~~~~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~ 778 (1056)
.++. ...+++.|++++|++.+.. +..+..+++|+.|++++|++++..+. .+
T Consensus 395 -----------------------~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 395 -----------------------TLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp -----------------------CCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred -----------------------CCCC----CCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf -----------------------1455----4554312214567534575566651277666666778712555543335
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHC
Q ss_conf 18999889985278586447855356642223479999999975443457999960221210343103542101110000
Q 001547 779 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 858 (1056)
Q Consensus 779 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (1056)
..+++|+.|++++|.+++..+....... ...+
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~------------------------------------------------~~~l 479 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDV------------------------------------------------FEGL 479 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSC------------------------------------------------SSCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHH------------------------------------------------HCCC
T ss_conf 6687310024777736441013553555------------------------------------------------4475
Q ss_pred CCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 35673776898136779110039776887768786485446523569999998985386075347812118987876873
Q 001547 859 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 938 (1056)
Q Consensus 859 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l 938 (1056)
++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|..+. .|+.+++
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l 554 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDI 554 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEE
T ss_pred CCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEE
T ss_conf 5365777889856553955704501221569999978745710110--0455888988847888966837---7688993
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 567462369976534588885566788788889998-988767788888899899875
Q 001547 939 AYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMSEASTSNEGDDNL 995 (1056)
Q Consensus 939 s~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~-~c~~~~~~~~~~~~~~~~~~~ 995 (1056)
++|++.|.++. ..|.......+..+|+.+.. .|..+....+..........|
T Consensus 555 ~~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C 607 (844)
T 3j0a_A 555 THNKFICECEL-----STFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607 (844)
T ss_dssp EEECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred CCCCCCCCCCC-----HHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 19970253661-----899999973685302660027557806657972002761228
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=428.54 Aligned_cols=296 Identities=25% Similarity=0.236 Sum_probs=184.6
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 98979985477477435210247743350112363055558944559999949987798689989722359999748986
Q 001547 590 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 669 (1056)
Q Consensus 590 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 669 (1056)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 78618989799455158634525899999989798189879688368889998989899788518788468999998989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 89945588830003999886998316757556898777774048984785153325755346999865998537407755
Q 001547 670 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 749 (1056)
Q Consensus 670 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 749 (1056)
++|.+....+..|..+++|+.|++++|.+.+ +..+++|+.|++++|+++.
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------------i~~~~~L~~L~l~~N~l~~- 395 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----------------------------IHFIPSIPDIFLSGNKLVT- 395 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----------------------------CSSCCSCSEEEEESCCCCC-
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-----------------------------CCCCCCCCHHCCCCCCCCC-
T ss_conf 8998776286661378889998898997786-----------------------------1688982320058997231-
Q ss_pred CCHHHHCCCCCCEEECCCCCCCCCCC-HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52433335888899858873644477-00018999889985278586447855356642223479999999975443457
Q 001547 750 IPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSIS 828 (1056)
Q Consensus 750 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1056)
+|.. ..+++.|++++|++.+... ..+..+++|+.|++++|++++..+.....
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------ 448 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS------------------------ 448 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC------------------------
T ss_pred CCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC------------------------
T ss_conf 4554---5543122145675345755666512776666667787125555433356------------------------
Q ss_pred CCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCC-----CCCCHHCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 99996022121034310354210111000035673776898136-----7791100397768877687864854465235
Q 001547 829 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV-----GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 903 (1056)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 903 (1056)
.+++|+.|++++|.+. +..+..|..+++|+.|+|++|++++..|..|
T Consensus 449 ----------------------------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 500 (844)
T 3j0a_A 449 ----------------------------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500 (844)
T ss_dssp ----------------------------SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred ----------------------------CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHC
T ss_conf ----------------------------6873100247777364410135535554475536577788985655395570
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 699999989853860753478121189878768735674623699765345888855667887888899989
Q 001547 904 SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 975 (1056)
Q Consensus 904 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~ 975 (1056)
..+++|+.|+|++|++++..|..+. +.|+.+++++|++++.+|.. +..+....+.+||+.|+|++.|
T Consensus 501 ~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 501 SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELST 567 (844)
T ss_dssp SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSCCS
T ss_pred CCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH---HCCCCEEEECCCCCCCCCCCHH
T ss_conf 4501221569999978745710110--04558889888478889668---3776889931997025366189
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=422.31 Aligned_cols=305 Identities=26% Similarity=0.257 Sum_probs=164.6
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 99599854783664588224588779799866764889663577634998979985477477435210247743350112
Q 001547 542 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 621 (1056)
Q Consensus 542 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 621 (1056)
+++.+++++|.+.+..+..|..+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred CEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHH-CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 5059994457658557777445667888956288267-778214-16546888977168768676023301576898889
Q ss_pred CCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 36305555894-45599999499877986899897223599997489868994558883000399988699831675755
Q 001547 622 EGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 700 (1056)
Q Consensus 622 ~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 700 (1056)
++|.+.+.++. .+..+++|+.|++++|.+.+.. ..+..+..+++|+.|++++|.+.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSD----------------------CCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE----------------------ESTTTTTTCTTCCEEECCSCSCEE
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC----------------------CCCHHCCCCCCCCEEECCCCCCCC
T ss_conf 8997444346245506675898878899666456----------------------752210567888989898996775
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHHCC
Q ss_conf 689877777404898478515332575534699986599853740775552-4333358888998588736444770001
Q 001547 701 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLC 779 (1056)
Q Consensus 701 ~~~~~~~~~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 779 (1056)
.. +. .|..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+.
T Consensus 391 ~~-----------------------~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 391 LK-----------------------TE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp EC-----------------------TT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CC-----------------------HH-HHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 78-----------------------88-7347745776878888677756521241765588898989855776877873
Q ss_pred CCCCCCEEECCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCH
Q ss_conf 8999889985278586447---8553566422234799999999754434579999602212103431035421011100
Q 001547 780 RLNQLQLLDLSDNNLHGLI---PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 856 (1056)
Q Consensus 780 ~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (1056)
.+++|++|++++|++++.. +..+..
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~---------------------------------------------------- 474 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQT---------------------------------------------------- 474 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGG----------------------------------------------------
T ss_pred CCCCCCEEECCCCCCCCCCCCCCHHHCC----------------------------------------------------
T ss_conf 7887888989899888543454312404----------------------------------------------------
Q ss_pred HCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 00356737768981367791100397768877687864854465235699999989853860753478121189878768
Q 001547 857 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 936 (1056)
Q Consensus 857 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l 936 (1056)
+++|+.|++++|++++..|..|..+++|+.|+|++|++++..|..+..+++| .|++++|++++..|..+..++.|+.+
T Consensus 475 -l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 475 -LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp -CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred -CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEE
T ss_conf -8876688799996670686463265678889898980686896684756651-89876894142687662567787889
Q ss_pred ECCCCCCCCCCC
Q ss_conf 735674623699
Q 001547 937 IVAYNNLSGKIP 948 (1056)
Q Consensus 937 ~ls~N~l~~~~p 948 (1056)
++++|++.|.++
T Consensus 553 ~l~~N~~~c~c~ 564 (606)
T 3t6q_A 553 NLRQNPLDCTCS 564 (606)
T ss_dssp ECTTCCEECSGG
T ss_pred ECCCCCCCCCCC
T ss_conf 677998616677
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=419.68 Aligned_cols=212 Identities=25% Similarity=0.258 Sum_probs=146.4
Q ss_pred CCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5999974898689945588--83000399988699831675755689877777404898478515332575534699986
Q 001547 659 GNLKGLQHIVMPKNHLEGP--IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSL 736 (1056)
Q Consensus 659 ~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~i~~~~~~~l~~L 736 (1056)
..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+ ++. .+..+++|
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------~~~-~~~~l~~L 401 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII------------------------MSA-NFMGLEEL 401 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE------------------------ECC-CCTTCTTC
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC------------------------CHH-HCCCCCCC
T ss_conf 24898887977587368775201221467755486788995300------------------------055-40688888
Q ss_pred CEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 599853740775552-433335888899858873644477000189998899852785864-478553566422234799
Q 001547 737 VTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNN 814 (1056)
Q Consensus 737 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~~~~~~ 814 (1056)
+.|++++|++.+..+ ..+..+++|+.|++++|++.+..|..+..+++|++|++++|.+++ ..|..+..++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------- 473 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-------- 473 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT--------
T ss_pred CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC--------
T ss_conf 965898870587537645646213788989689787433555347787898989898379854677604578--------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCC
Q ss_conf 99999975443457999960221210343103542101110000356737768981367791100397768877687864
Q 001547 815 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN 894 (1056)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 894 (1056)
+|+.|++++|++++..|..|..+++|+.|+|++|+
T Consensus 474 ---------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 474 ---------------------------------------------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp ---------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------------------------------CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf ---------------------------------------------89989898885776486561546468989898995
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCC
Q ss_conf 8544652356999999898538607534781211898-787687356746236997
Q 001547 895 LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNLSGKIPE 949 (1056)
Q Consensus 895 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~l~ls~N~l~~~~p~ 949 (1056)
+++..|..|..+++|+.|++++|+++ .+|..+..++ .|+.+++++|++.|.++.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 78748777068876898889898376-66876752102174887628986647764
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=416.56 Aligned_cols=282 Identities=25% Similarity=0.273 Sum_probs=125.7
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 99995998547836645882245887797998667648896635776349989799854774774352-10247743350
Q 001547 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF-SRIFSLRNLRW 618 (1056)
Q Consensus 540 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 618 (1056)
+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+ ..+..+++|++
T Consensus 277 l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp CTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred CCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCE
T ss_conf 667888956288267-77821416546888977168768-6760233015768988898997444346245506675898
Q ss_pred EECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 112363055558--944559999949987798689989722359999748986899455888300039998869983167
Q 001547 619 LLLEGNHFVGEI--PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 696 (1056)
Q Consensus 619 L~L~~n~~~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 696 (1056)
|++++|.+.+.. +..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..+
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------- 417 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA----------------- 417 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT-----------------
T ss_pred EECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC-----------------
T ss_conf 878899666456752210567888989898996775788873477457768788886777565-----------------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC---
Q ss_conf 57556898777774048984785153325755346999865998537407755524333358888998588736444---
Q 001547 697 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE--- 773 (1056)
Q Consensus 697 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 773 (1056)
...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 418 ------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 467 (606)
T 3t6q_A 418 ------------------------------QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467 (606)
T ss_dssp ------------------------------CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC
T ss_pred ------------------------------CHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf ------------------------------21241765588898989855776877873788788898989988854345
Q ss_pred CCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCC
Q ss_conf 77000189998899852785864478553566422234799999999754434579999602212103431035421011
Q 001547 774 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853 (1056)
Q Consensus 774 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1056)
.+..+..+++|++|++++|.+++..|..|..++
T Consensus 468 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------------------------------- 500 (606)
T 3t6q_A 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK----------------------------------------------- 500 (606)
T ss_dssp SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT-----------------------------------------------
T ss_pred CCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC-----------------------------------------------
T ss_conf 431240488766887999966706864632656-----------------------------------------------
Q ss_pred CCHHCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 10000356737768981367791100397768877687864854465235699999989853860753478
Q 001547 854 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 924 (1056)
Q Consensus 854 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 924 (1056)
.|+.|++++|++++..|..+..++.| .|++++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 501 ------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 501 ------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ------CCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf ------78889898980686896684756651-89876894142687662567787889677998616677
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=412.51 Aligned_cols=211 Identities=23% Similarity=0.256 Sum_probs=124.7
Q ss_pred CCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 999994998779868998--972235999974898689945588830003999886998316757556898777774048
Q 001547 636 KCSSLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQ 713 (1056)
Q Consensus 636 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~ 713 (1056)
.+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+ .|..+..+++|+.|++++|.+.+.
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~------------ 414 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV------------ 414 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST------------
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCC------------
T ss_conf 4898887977587368775201221467755486788995300-055406888889658988705875------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC-CCCHHCCCCCCCCEEECCCC
Q ss_conf 98478515332575534699986599853740775552433335888899858873644-47700018999889985278
Q 001547 714 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDN 792 (1056)
Q Consensus 714 L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N 792 (1056)
.+...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+ ..|..+..+++|+.|++++|
T Consensus 415 -----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 415 -----------TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp -----------TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred -----------CCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCC
T ss_conf -----------376456462137889896897874335553477878989898983798546776045788998989888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCC
Q ss_conf 58644785535664222347999999997544345799996022121034310354210111000035673776898136
Q 001547 793 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 872 (1056)
Q Consensus 793 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 872 (1056)
.+++..|..|..++ +|+.|++++|+++
T Consensus 484 ~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 484 QLEQISWGVFDTLH-----------------------------------------------------RLQLLNMSHNNLL 510 (606)
T ss_dssp CCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSCCS
T ss_pred CCCCCCHHHHCCCC-----------------------------------------------------CCCEEECCCCCCC
T ss_conf 57764865615464-----------------------------------------------------6898989899578
Q ss_pred CCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCC
Q ss_conf 77911003977688776878648544652356999-99989853860753478
Q 001547 873 GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR-HIESLDLSYNKLSGKIP 924 (1056)
Q Consensus 873 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p 924 (1056)
+..|..|..+++|+.|+|++|+++ .+|..+..++ +|+.|++++|++.+..+
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 748777068876898889898376-6687675210217488762898664776
Done!