BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001548
(1056 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 72
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 131
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 236
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 835 CWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
C N N + S +D V++WD TG+ + H +V F++ + + S S D
Sbjct: 109 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 167
Query: 895 SVKLWNINEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
++W+ L T+ + N V V+FS + ++LA + D +D + C+
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CL 223
Query: 953 --LAGH--EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
GH EK + F +G +V+ S DN + +W+L+
Sbjct: 224 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 263
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWS-VDFSQVHPTKLASGSDDCSVKLWNIN 902
+ S+ YDG+ ++WD +GQ + I+ + S V FS LA+ D+ ++KLW+ +
Sbjct: 160 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYS 218
Query: 903 EKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T KN FS + GS D Y ++L+ L GH
Sbjct: 219 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ-KLQGHTDV 277
Query: 960 VSYVKFLDSGTLVTAS---TDNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 278 VISTACHPTENIIASAALENDKTIKLW 304
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 63
Query: 1012 I 1012
I
Sbjct: 64 I 64
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 75
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 134
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 239
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 835 CWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
C N N + S +D V++WD TG+ + H +V F++ + + S S D
Sbjct: 112 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 170
Query: 895 SVKLWNINEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
++W+ L T+ + N V V+FS + ++LA + D +D + C+
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CL 226
Query: 953 --LAGH--EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
GH EK + F +G +V+ S DN + +W+L+
Sbjct: 227 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 266
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWS-VDFSQVHPTKLASGSDDCSVKLWNIN 902
+ S+ YDG+ ++WD +GQ + I+ + S V FS LA+ D+ ++KLW+ +
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYS 221
Query: 903 EKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T KN FS + GS D Y ++L+ L GH
Sbjct: 222 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ-KLQGHTDV 280
Query: 960 VSYVKFLDSGTLVTAS---TDNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 281 VISTACHPTENIIASAALENDKTIKLW 307
Score = 33.5 bits (75), Expect = 0.71, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 66
Query: 1012 I 1012
I
Sbjct: 67 I 67
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 81
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 140
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 245
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWS-VDFSQVHPTKLASGSDDCSVKLWNIN 902
+ S+ YDG+ ++WD +GQ + I+ + S V FS LA+ D+ ++KLW+ +
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYS 227
Query: 903 EKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T KN FS + GS D Y ++L+ L GH
Sbjct: 228 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ-KLQGHTDV 286
Query: 960 VSYVKFLDSGTLVTAS---TDNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 287 VISTACHPTENIIASAALENDKTIKLW 313
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 72
Query: 1012 I 1012
I
Sbjct: 73 I 73
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 76
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 135
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 240
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWS-VDFSQVHPTKLASGSDDCSVKLWNIN 902
+ S+ YDG+ ++WD +GQ + I+ + S V FS LA+ D+ ++KLW+ +
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYS 222
Query: 903 EKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T KN FS + GS D Y ++L+ L GH
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ-KLQGHTDV 281
Query: 960 VSYVKFLDSGTLVTAS---TDNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLW 308
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 67
Query: 1012 I 1012
I
Sbjct: 68 I 68
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 76
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 135
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 240
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 835 CWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
C N N + S +D V++WD TG+ + H +V F++ + + S S D
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 171
Query: 895 SVKLWNINEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
++W+ L T+ + N V V+FS + ++LA + D +D + C+
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CL 227
Query: 953 --LAGH--EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
GH EK + F +G +V+ S DN + +W+L+
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWS-VDFSQVHPTKLASGSDDCSVKLWNIN 902
+ S+ YDG+ ++WD +GQ + I+ + S V FS LA+ D+ ++KLW+ +
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYS 222
Query: 903 EKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T KN FS + GS D Y ++L+ L GH
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ-KLQGHTDV 281
Query: 960 VSYVKFLDSGTLVTAS---TDNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLW 308
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 67
Query: 1012 I 1012
I
Sbjct: 68 I 68
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 77
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 136
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 241
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWS-VDFSQVHPTKLASGSDDCSVKLWNIN 902
+ S+ YDG+ ++WD +GQ + I+ + S V FS LA+ D+ ++KLW+ +
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYS 223
Query: 903 EKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T KN FS + GS D Y ++L+ L GH
Sbjct: 224 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ-KLQGHTDV 282
Query: 960 VSYVKFLDSGTLVTAS---TDNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 283 VISTACHPTENIIASAALENDKTIKLW 309
Score = 33.1 bits (74), Expect = 0.84, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 68
Query: 1012 I 1012
I
Sbjct: 69 I 69
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 98
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 157
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 262
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKLWNI 901
+ S+ YDG+ ++WD +GQ + I+ + V F + P + + + D ++KLW+
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 902 NEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
++ L T KN FS + GS D Y ++L+ L GH
Sbjct: 244 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTD 302
Query: 959 AVSYVKFLDSGTLVTAST---DNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG+ + H +V F++ + + S S D ++W+
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 200
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 256
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 89
Query: 1012 I 1012
I
Sbjct: 90 I 90
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 100
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 159
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 264
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKLWNI 901
+ S+ YDG+ ++WD +GQ + I+ + V F + P + + + D ++KLW+
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 902 NEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
++ L T KN FS + GS D Y ++L+ L GH
Sbjct: 246 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTD 304
Query: 959 AVSYVKFLDSGTLVTAST---DNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 305 VVISTACHPTENIIASAALENDKTIKLW 332
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG+ + H +V F++ + + S S D ++W+
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 202
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 258
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 259 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 291
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 91
Query: 1012 I 1012
I
Sbjct: 92 I 92
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + AA+ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 79
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 243
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKLWNI 901
+ S+ YDG+ ++WD +GQ + I+ + V F + P + + + D ++KLW+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 902 NEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
++ L T KN FS + GS D Y ++L+ L GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTD 283
Query: 959 AVSYVKFLDSGTLVTAST---DNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLW 311
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG+ + H +V F++ + + S S D ++W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 181
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 237
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGTLVTASTDNKL-KLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G + AS+ +KL K+W G T SGH K+G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIW--------GAYDGKFEKTISGH---KLG 70
Query: 1012 I 1012
I
Sbjct: 71 I 71
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 82
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 141
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 246
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/350 (20%), Positives = 131/350 (37%), Gaps = 54/350 (15%)
Query: 651 PLVDPSLQNESAPSRENRYFNEQLSS-----SEAQLSP----ISDANEMRLMRNLNQLER 701
PL P Q++ P + N L+ S + SP ++ ++ +L++ +
Sbjct: 2 PLGSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 61
Query: 702 AYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARY 761
+ S +L SD +D++LL A D+ ++ G L ++ Y
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVS------ASDDKTLKIWDVSSGKCLKTLKGHSNY 115
Query: 762 SKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYP 821
+ FN +N+I S SFD + K K + +D V
Sbjct: 116 --------VFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVS---- 159
Query: 822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ 881
AV + L + S+ YDG+ ++WD +GQ + I+ + V F +
Sbjct: 160 AVHFNRDGSL------------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVK 205
Query: 882 VHPTK--LASGSDDCSVKLWNINEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADY 936
P + + + D ++KLW+ ++ L T KN FS + GS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 937 RTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAST---DNKLKLW 983
Y ++L+ L GH V + ++ ++ D +KLW
Sbjct: 266 LVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG+ + H +V F++ + + S S D ++W+
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 184
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 240
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 73
Query: 1012 I 1012
I
Sbjct: 74 I 74
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSS-D 93
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 152
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 257
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKLWNI 901
+ S+ YDG+ ++WD +GQ + I+ + V F + P + + + D ++KLW+
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 238
Query: 902 NEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
++ L T KN FS + GS D Y ++L+ L GH
Sbjct: 239 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTD 297
Query: 959 AVSYVKFLDSGTLVTAST---DNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 298 VVISTACHPTENIIASAALENDKTIKLW 325
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG+ + H +V F++ + + S S D ++W+
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 195
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 196 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 251
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 252 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 284
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 84
Query: 1012 I 1012
I
Sbjct: 85 I 85
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 82
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 141
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 246
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKLWNI 901
+ S+ YDG+ ++WD +GQ + I+ + V F + P + + + D ++KLW+
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 902 NEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
++ L T KN FS + GS D Y ++L+ L GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTD 286
Query: 959 AVSYVKFLDSGTLVTAST---DNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLW 314
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG+ + H +V F++ + + S S D ++W+
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 184
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 240
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 73
Query: 1012 I 1012
I
Sbjct: 74 I 74
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 26/236 (11%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 79
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYC--YDLRNARAPWCVLAGHE 957
+ L T+ ++ V V F+ S ++ S+ Y C +D + + ++
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIV---SSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 958 KAVSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 243
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG+ + H +V F++ + + S S D ++W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 181
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 237
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSV--DFSQVHPTKLASGSDDCSVKLWN 900
Y+ +A D +KLWD G+ + Y H+ + + +FS + SGS+D V +WN
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 901 INEKNSLATIKNIANV 916
+ K + ++ +V
Sbjct: 269 LQTKEIVQKLQGHTDV 284
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 70
Query: 1012 I 1012
I
Sbjct: 71 I 71
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSS-D 79
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 243
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSV--DFSQVHPTKLASGSDDCSVKLWN 900
Y+ +A D +KLWD G+ + Y H+ + + +FS + SGS+D V +WN
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 901 INEKNSLATIKNIANV 916
+ K + ++ +V
Sbjct: 269 LQTKEIVQKLQGHTDV 284
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKLWNI 901
+ S+ YDG+ ++WD +GQ + I+ + V F + P + + + D ++KLW+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 902 NEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLR 944
++ L T KN FS + GS D Y ++L+
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG+ + H +V F++ + + S S D ++W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 181
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 237
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 70
Query: 1012 I 1012
I
Sbjct: 71 I 71
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 82
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 141
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 246
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKLWNI 901
+ S+ YDG+ ++WD +GQ + I+ + V F + P + + + D ++KLW+
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 902 NEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
++ L T KN FS + GS D Y ++L+ L GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTD 286
Query: 959 AVSYVKFLDSGTLVTAST---DNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLW 314
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG+ + H +V F++ + + S S D ++W+
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 184
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 240
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 73
Query: 1012 I 1012
I
Sbjct: 74 I 74
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 838 NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVK 897
+ N + S D +K+W A TG+ + + H WS SQ+ + SGS D ++K
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLK 182
Query: 898 LWNINEKNSLATI-KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH 956
+WN + T+ + + V C+ H +++ GS D +D+ + VL GH
Sbjct: 183 VWNAETGECIHTLYGHTSTVRCMHL--HEKRVVS-GSRDATLRVWDIETGQCL-HVLMGH 238
Query: 957 EKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNE 1008
AV V++ D +V+ + D +K+WD P T C T GHTN
Sbjct: 239 VAAVRCVQY-DGRRVVSGAYDFMVKVWD--------PETETCLHTLQGHTNR 281
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 19/170 (11%)
Query: 823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQ 881
V M + + + CV Y + S YD +VK+WD T +T H ++ H R +S+ F
Sbjct: 234 VLMGHVAAVRCV---QYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQFDG 289
Query: 882 VHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCY 941
+H + SGS D S+++W++ N + T+ ++ ++L G+AD +
Sbjct: 290 IH---VVSGSLDTSIRVWDVETGNCIHTLTGHQSL--TSGMELKDNILVSGNADSTVKIW 344
Query: 942 DLRNARAPWCV--LAG---HEKAVSYVKFLDSGTLVTASTDNKLKLWDLK 986
D++ + C+ L G H+ AV+ ++F + ++T+S D +KLWDLK
Sbjct: 345 DIKTGQ---CLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLK 390
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 836 WNNYIK-NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
W++ ++ N + S D +K+W+A TG+ + H +V +H ++ SGS D
Sbjct: 163 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTS---TVRCMHLHEKRVVSGSRDA 219
Query: 895 SVKLWNINEKNSL-ATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV- 952
++++W+I L + ++A V CVQ+ + G+ D+ +D C+
Sbjct: 220 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWD---PETETCLH 273
Query: 953 -LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
L GH V ++F D +V+ S D +++WD++ T C T +GH + G
Sbjct: 274 TLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVE--------TGNCIHTLTGHQSLTSG 324
Query: 1012 I 1012
+
Sbjct: 325 M 325
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHE 871
++S ++C+ +N KN++ ++ DG VKLWD TG+ + + + E
Sbjct: 361 HQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 402
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 79
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCI 243
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKLWNI 901
+ S+ YDG+ ++WD +GQ + I+ + V F + P + + + D ++KLW+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 902 NEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
++ L T KN FS + GS D Y ++L+ L GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV-QKLQGHTD 283
Query: 959 AVSYVKFLDSGTLVTAST---DNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLW 311
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG + H +V F++ + + S S D ++W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 181
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGK---CLKTYTGHK 237
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 70
Query: 1012 I 1012
I
Sbjct: 71 I 71
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIF-EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
+ S+ F + + A++ K IKI+ ++ F ++ ++ +S V W++
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD- 79
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
N L SA D +K+WD +G+ + H + +F+ + SGS D SV++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 901 INEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ L T+ ++ V V F+ S L+ S D +D + + ++
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 960 VSYVKFLDSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGI 1012
VS+VKF +G + A+T DN LKLWD S C T++GH NEK I
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDY--------SKGKCLKTYTGHKNEKYCI 243
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKLWNI 901
+ S+ YDG+ ++WD +GQ + I+ + V F + P + + + D +KLW+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNDLKLWDY 224
Query: 902 NEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
++ L T KN FS + GS D Y ++L+ L GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV-QKLQGHTD 283
Query: 959 AVSYVKFLDSGTLVTAST---DNKLKLW 983
V + ++ ++ D +KLW
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLW 311
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S +D V++WD TG + H +V F++ + + S S D ++W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 181
Query: 902 NEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGH- 956
L T+ + N V V+FS + ++LA + D +D + C+ GH
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNDLKLWDYSKGK---CLKTYTGHK 237
Query: 957 -EKAVSYVKFLDSGT--LVTASTDNKLKLWDLK 986
EK + F +G +V+ S DN + +W+L+
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 953 LAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVG 1011
LAGH KAVS VKF +G L ++S D +K+W G T SGH K+G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--------GAYDGKFEKTISGH---KLG 70
Query: 1012 I 1012
I
Sbjct: 71 I 71
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 834 VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
+ WN+ + +L SA D V LWD G ++ H V + +H +
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 887 LASGSDDCSVKLW----NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
S +DD + +W N K S + A V C+ F+ +S +LA GSAD +D
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 943 LRNARAPWCVLAGHEKAVSYVKF--LDSGTLVTASTDNKLKLWDLKR 987
LRN + H+ + V + + L ++ TD +L +WDL +
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Query: 793 HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV 852
H +A + +++ NA + V A+ + + + V W+ ++ S D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 853 VKLWDACTGQT--VSHYIE-HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI-NEKNSLA 908
+ +WD + T SH ++ H + F+ LA+GS D +V LW++ N K L
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 909 TIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDL 943
T ++ + + V +S H+ +LA D R +DL
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 870 HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSS--- 926
H+K + + ++ L S SDD +V LW+IN I + + F+ HS+
Sbjct: 178 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI----FTGHSAVVE 233
Query: 927 ----HLL---AFGSA--DYRTYCYDLRN--ARAPWCVLAGHEKAVSYVKF--LDSGTLVT 973
HLL FGS D + +D R+ P ++ H V+ + F L T
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 974 ASTDNKLKLWDLK 986
S D + LWDL+
Sbjct: 294 GSADKTVALWDLR 306
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHP 884
++ ++++C+ +N Y + LA+ D V LWD + H E H+ + V +S +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 885 TKLASGSDDCSVKLWNINE 903
T LAS D + +W++++
Sbjct: 333 TILASSGTDRRLNVWDLSK 351
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 834 VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
+ WN+ + +L SA D V LWD G ++ H V + +H +
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 887 LASGSDDCSVKLW----NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
S +DD + +W N K S + A V C+ F+ +S +LA GSAD +D
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 943 LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKR 987
LRN + H+ + V + + AS TD +L +WDL +
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Query: 793 HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV 852
H +A + +++ NA + V A+ + + + V W+ ++ S D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 853 VKLWDACTGQT--VSHYIE-HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI-NEKNSLA 908
+ +WD + T SH ++ H + F+ LA+GS D +V LW++ N K L
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 909 TIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDL 943
T ++ + + V +S H+ +LA D R +DL
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 870 HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSS--- 926
H+K + + ++ L S SDD +V LW+IN I + + F+ HS+
Sbjct: 178 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI----FTGHSAVVE 233
Query: 927 ----HLL---AFGSA--DYRTYCYDLRN--ARAPWCVLAGHEKAVSYVKF--LDSGTLVT 973
HLL FGS D + +D R+ P ++ H V+ + F L T
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 974 ASTDNKLKLWDLK 986
S D + LWDL+
Sbjct: 294 GSADKTVALWDLR 306
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHP 884
++ ++++C+ +N Y + LA+ D V LWD + H E H+ + V +S +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 885 TKLASGSDDCSVKLWNINE 903
T LAS D + +W++++
Sbjct: 333 TILASSGTDRRLNVWDLSK 351
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 119/264 (45%), Gaps = 29/264 (10%)
Query: 781 VICSISFDRDEDHFAAAGVSKKIKIFEFN------ALFNDSVDVYYP-----AVEMSNRS 829
V+C + F D ++ A G +K +++ + L +DS P + S+
Sbjct: 66 VVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 124
Query: 830 KLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT--KL 887
+ VC++ K +LA+ D ++++WD + V HE+ +S+D+ P+ KL
Sbjct: 125 YIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY---FPSGDKL 180
Query: 888 ASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD----- 942
SGS D +V++W++ T+ V V S +A GS D +D
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 943 -LRNARAPWCVLAGHEKAVSYVKFLDSG-TLVTASTDNKLKLWDLK----RTSHTGPSTN 996
+ + GH+ +V V F G ++V+ S D +KLW+L+ ++ P++
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 997 ACSLTFSGHTNEKVGICRLEHNLF 1020
C +T+ GH + + + +++ +
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEY 324
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 13/167 (7%)
Query: 834 VCWNNYIKNYLASADYDGVVKLWDACT----GQTV---SHYIEHEKRAWSVDFSQVHPTK 886
+ WN + +L SA D + LWD G+ V + + H V + +H +
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 887 LASGSDDCSVKLWNINEKN----SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
S +DD + +W+ N S + + A V C+ F+ +S +LA GSAD +D
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 943 LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKR 987
LRN + H+ + V++ + AS TD +L +WDL +
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 870 HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN---EKNSLATIKNI--ANVCCVQ-FSA 923
H+K + + ++ L S SDD ++ LW+I+ ++ + K I + V+ S
Sbjct: 176 HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW 235
Query: 924 HSSHLLAFGSA--DYRTYCYDLR--NARAPWCVLAGHEKAVSYVKF--LDSGTLVTASTD 977
H H FGS D + +D R N P + H V+ + F L T S D
Sbjct: 236 HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 978 NKLKLWDLK 986
+ LWDL+
Sbjct: 296 KTVALWDLR 304
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHP 884
++ ++++C+ +N Y + LA+ D V LWD + H E H+ + V +S +
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 330
Query: 885 TKLASGSDDCSVKLWNINE 903
T LAS D + +W++++
Sbjct: 331 TILASSGTDRRLNVWDLSK 349
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 834 VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
+ WN + YL SA D + LWD I+ H V + +H +
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 887 LASGSDDCSVKLWNINEKN----SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
S +DD + +W+ N S + A V C+ F+ +S +LA GSAD +D
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 943 LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKR 987
LRN + H+ + V++ + AS TD +L +WDL +
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHP 884
++ ++++C+ +N Y + LA+ D V LWD + H E H+ + V +S +
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 334
Query: 885 TKLASGSDDCSVKLWNINE 903
T LAS D + +W++++
Sbjct: 335 TILASSGTDRRLHVWDLSK 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 834 VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
+ WN + YL SA D + LWD I+ H V + +H +
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 887 LASGSDDCSVKLWNINEKN----SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
S +DD + +W+ N S + A V C+ F+ +S +LA GSAD +D
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 943 LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKR 987
LRN + H+ + V++ + AS TD +L +WDL +
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHP 884
++ ++++C+ +N Y + LA+ D V LWD + H E H+ + V +S +
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 336
Query: 885 TKLASGSDDCSVKLWNINE 903
T LAS D + +W++++
Sbjct: 337 TILASSGTDRRLHVWDLSK 355
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 834 VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
+ WN + YL SA D + LWD I+ H V + +H +
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 887 LASGSDDCSVKLWNINEKN----SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
S +DD + +W+ N S + A V C+ F+ +S +LA GSAD +D
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 943 LRNARAPWCVLAGHEKAVSYVKF--LDSGTLVTASTDNKLKLWDLKR 987
LRN + H+ + V++ + L ++ TD +L +WDL +
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHP 884
++ ++++C+ +N Y + LA+ D V LWD + H E H+ + V +S +
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 338
Query: 885 TKLASGSDDCSVKLWNINE 903
T LAS D + +W++++
Sbjct: 339 TILASSGTDRRLHVWDLSK 357
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 17/205 (8%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVE-MSNRSKLSCVCWNNYI 840
+ ++F D A+A K +K++ N ++ + +V ++ R
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPD---------- 273
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
+ASA D VKLW+ GQ + H W V FS T +AS SDD +VKLWN
Sbjct: 274 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWN 331
Query: 901 INEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAV 960
N ++ + ++V V FS +A S D ++ RN + L GH +V
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSV 388
Query: 961 SYVKFL-DSGTLVTASTDNKLKLWD 984
V F D T+ +AS D +KLW+
Sbjct: 389 RGVAFSPDGQTIASASDDKTVKLWN 413
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 15/204 (7%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIK 841
+ ++F D A+A K +K++ N ++ + +V S
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP---------DG 110
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
+ASA D VKLW+ GQ + H W V FS T +AS SDD +VKLWN
Sbjct: 111 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR 168
Query: 902 NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVS 961
N + + ++V V FS +A S D ++ RN + L GH +V
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVR 225
Query: 962 YVKFL-DSGTLVTASTDNKLKLWD 984
V F D T+ +AS D +KLW+
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWN 249
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIFEFNA-----LFNDSVDVYYPAVEMSNRSKLSCVCW 836
+ ++F D A+A K +K++ N L S V+ A +++
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQT------- 440
Query: 837 NNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSV 896
+ASA D VKLW+ GQ + H V FS T +AS SDD +V
Sbjct: 441 -------IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTV 491
Query: 897 KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH 956
KLWN N + + ++V V FS +A S D ++ RN + L GH
Sbjct: 492 KLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLL-QTLTGH 548
Query: 957 EKAVSYVKFLDSG-TLVTASTDNKLKLWD 984
+V V F G T+ +AS+D +KLW+
Sbjct: 549 SSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 97/232 (41%), Gaps = 30/232 (12%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIFEFNA-----LFNDSVDVYYPAVEMSNRSKLSCVCW 836
+ ++F D A+A K +K++ N L S V+ A ++
Sbjct: 142 VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT------- 194
Query: 837 NNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSV 896
+ASA D VKLW+ GQ + H V FS T +AS SDD +V
Sbjct: 195 -------IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTV 245
Query: 897 KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH 956
KLWN N + + ++V V F +A S D ++ RN + L GH
Sbjct: 246 KLWNRNGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWN-RNGQLL-QTLTGH 302
Query: 957 EKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSH----TGPSTNACSLTFS 1003
+V V F D T+ +AS D +KLW+ + H TG S++ + FS
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFS 353
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 887 LASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
+AS SDD +VKLWN N + + ++V V FS +A S D ++ RN
Sbjct: 31 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNG 88
Query: 947 RAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWD 984
+ L GH +V V F D T+ +AS D +KLW+
Sbjct: 89 QLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSF 551
Q+ K Y SPE++ G + +I+SLG++ FEL F ++ ++D+R+ PP F
Sbjct: 190 QVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLF 249
Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQSEV 584
+ P E L P P+ RP I+++ V
Sbjct: 250 TQKYPCEYVMVQDMLSPSPMERPEAINIIENAV 282
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 314 NLREWLNARG--HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK 369
NL++W+N R + +R CL+IF QI V++ H++G+ DLKPS+ + VK
Sbjct: 101 NLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVK 158
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
+ S +DG ++LWD TG T ++ H K SV FS + ++ SGS D ++KLW
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLW--- 155
Query: 903 EKNSLATIKNIAN-------VCCVQFSAHSSH-LLAFGSADYRTYCYDLRNARAPWCVLA 954
N+L K V CV+FS +SS+ ++ D ++L N +
Sbjct: 156 --NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHI 212
Query: 955 GHEKAVSYVKFLDSGTL-VTASTDNKLKLWDLKRTSH 990
GH ++ V G+L + D + LWDL H
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 19/224 (8%)
Query: 772 TGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKL 831
T F + S++F D + K IK L+N Y + S+ +
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK------LWNTLGVCKYTVQDESHSEWV 174
Query: 832 SCVCWN-NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASG 890
SCV ++ N + S +D +VK+W+ + +++I H +V S + ASG
Sbjct: 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASG 233
Query: 891 SDDCSVKLWNINEKNSLATIK--NIANVCCVQFSAHSSHLLAFGSADYRTY-------CY 941
D LW++NE L T+ +I N C FS + L A + +
Sbjct: 234 GKDGQAMLWDLNEGKHLYTLDGGDIINALC--FSPNRYWLCAATGPSIKIWDLEGKIIVD 291
Query: 942 DLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDL 985
+L+ A + S D TL TDN +++W +
Sbjct: 292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 24/161 (14%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
+ S +DG ++LWD TG T ++ H K SV FS + ++ SGS D ++KLW
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLW--- 132
Query: 903 EKNSLATIKNIAN-------VCCVQFSAHSSH-LLAFGSADYRTYCYDLRNARAPWCVLA 954
N+L K V CV+FS +SS+ ++ D ++L N C L
Sbjct: 133 --NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-----CKLK 185
Query: 955 ----GHEKAVSYVKFLDSGTL-VTASTDNKLKLWDLKRTSH 990
GH ++ V G+L + D + LWDL H
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 226
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 19/224 (8%)
Query: 772 TGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKL 831
T F + S++F D + K IK L+N Y + S+ +
Sbjct: 98 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK------LWNTLGVCKYTVQDESHSEWV 151
Query: 832 SCVCWN-NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASG 890
SCV ++ N + S +D +VK+W+ + +++I H +V S + ASG
Sbjct: 152 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASG 210
Query: 891 SDDCSVKLWNINEKNSLATIK--NIANVCCVQFSAHSSHLLAFGSADYRTY-------CY 941
D LW++NE L T+ +I N C FS + L A + +
Sbjct: 211 GKDGQAMLWDLNEGKHLYTLDGGDIINALC--FSPNRYWLCAATGPSIKIWDLEGKIIVD 268
Query: 942 DLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDL 985
+L+ A + S D TL TDN +++W +
Sbjct: 269 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 15/164 (9%)
Query: 787 FDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLAS 846
F D A+ G K +++F+ + +E+ C + ++A+
Sbjct: 629 FSEDGQRIASCGADKTLQVFK--------AETGEKLLEIKAHEDEVLCCAFSTDDRFIAT 680
Query: 847 ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQV-HPTKLASGSDDCSVKLWNINEK- 904
D VK+W++ TG+ V Y EH ++ F+ H LA+GS DC +KLW++N+K
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE 740
Query: 905 --NSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
N++ N N C +FS LLA SAD +D +A
Sbjct: 741 CRNTMFGHTNSVNHC--RFSP-DDKLLASCSADGTLKLWDATSA 781
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
+AS D ++++ A TG+ + HE FS +A+ S D VK+WN
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFS-TDDRFIATCSVDKKVKIWNSMT 694
Query: 904 KNSLATI-KNIANVCCVQFSAHSSHLL-AFGSADYRTYCYDLRNARAPWCVLAGHEKAVS 961
+ T ++ V C F+ S HLL A GS+D +DL N + + GH +V+
Sbjct: 695 GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVN 753
Query: 962 YVKFL-DSGTLVTASTDNKLKLWD 984
+ +F D L + S D LKLWD
Sbjct: 754 HCRFSPDDKLLASCSADGTLKLWD 777
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 29/221 (13%)
Query: 781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
V+C +F D+ A V KK+KI+ N++ + V Y E N C N+
Sbjct: 666 VLCC-AFSTDDRFIATCSVDKKVKIW--NSMTGELVHTYDEHSEQVN----CCHFTNSSH 718
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKL 898
LA+ D +KLWD + + H SV+ + P LAS S D ++KL
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTN---SVNHCRFSPDDKLLASCSADGTLKL 775
Query: 899 WN---INEKNSLATIKNIAN-----------VCCVQFSAHSSHLLAFGSADYRTYCYDLR 944
W+ NE+ S+ + N V C +SA + ++ +A + + +D+
Sbjct: 776 WDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMV--AAKNKIFLFDIH 833
Query: 945 NARAPWCVLAGHEKAVSYVKFLDSGTL-VTASTDNKLKLWD 984
+ + GH + Y F L V A + ++LW+
Sbjct: 834 TSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN 874
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQV 882
++ +++SC C + +++ Y+A D +G +++ + + +H+K W + F+
Sbjct: 962 IDYLTEAQVSCCCLSPHLQ-YIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTAD 1020
Query: 883 HPTKLASGSDDCSVKLWN 900
T L S SDD +++WN
Sbjct: 1021 EKT-LISSSDDAEIQVWN 1037
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
L S +DG VK+W+ TG ++ H+ S D S TK +S S D + K+W+ +
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISH-DATKFSSTSADKTAKIWSFDL 1122
Query: 904 KNSLATIKNIANVC--CVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
L ++ N C C FS S+ LLA G + +++ N
Sbjct: 1123 LLPLHELRG-HNGCVRCSAFSVDST-LLATGDDNGEIRIWNVSNG 1165
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
++L S+D D ++LW+ T + + K+ V F + LA D +L I
Sbjct: 902 SFLTSSD-DQTIRLWE--TKKVCKNSAVMLKQEVDVVFQENEVMVLAV---DHIRRLQLI 955
Query: 902 NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVS 961
N + A V C S H ++ AFG + +L N R H+K V
Sbjct: 956 NGRTGQIDYLTEAQVSCCCLSPHLQYI-AFGDENGAIEILELVNNRIFQSRFQ-HKKTVW 1013
Query: 962 YVKFL-DSGTLVTASTDNKLKLWD 984
+++F D TL+++S D ++++W+
Sbjct: 1014 HIQFTADEKTLISSSDDAEIQVWN 1037
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 787 FDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLAS 846
F +D A+ G K +++F+ + +++ C + +Y+A+
Sbjct: 623 FSQDGQRIASCGADKTLQVFK--------AETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 674
Query: 847 ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS-QVHPTKLASGSDDCSVKLWNINEK- 904
D VK+WD+ TG+ V Y EH ++ F+ + + LA+GS+D +KLW++N+K
Sbjct: 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Query: 905 --NSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
N++ N N C +FS LLA SAD +D+R+A
Sbjct: 735 CRNTMFGHTNSVNHC--RFSP-DDELLASCSADGTLRLWDVRSA 775
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
L S +DG VK+W+ TG+ + H+ S S TK +S S D + K+W+ +
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDL 1116
Query: 904 KNSLATIKNIANVCCVQFSAHS--SHLLAFGSADYRTYCYDLRNAR-----APWCVLAG- 955
+ L +K + CV+ SA S LLA G + +++ + + AP V G
Sbjct: 1117 LSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174
Query: 956 --HEKAVSYVKFL-DSGTLVTASTDNKLKLWDL 985
H V+ V F DS TLV+A LK W++
Sbjct: 1175 ATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNV 1205
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 914 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLV 972
A V C S H ++ AFG D +L N R + GH+KAV +++F D TL+
Sbjct: 962 AQVSCCCLSPHLEYV-AFGDEDGAIKIIELPNNRV-FSSGVGHKKAVRHIQFTADGKTLI 1019
Query: 973 TASTDNKLKLWD 984
++S D+ +++W+
Sbjct: 1020 SSSEDSVIQVWN 1031
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 95/265 (35%), Gaps = 67/265 (25%)
Query: 781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
V+C +F D+ + A KK+KI++ + V Y E N C N
Sbjct: 660 VLCC-AFSSDDSYIATCSADKKVKIWD--SATGKLVHTYDEHSEQVN----CCHFTNKSN 712
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKL 898
LA+ D +KLWD + + H SV+ + P LAS S D +++L
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTN---SVNHCRFSPDDELLASCSADGTLRL 769
Query: 899 WNINEKNSLATIK---------------NIANVCC-----------------VQFSAHSS 926
W++ N +I + CC + F H+S
Sbjct: 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829
Query: 927 HLLA--------------FGSADYRT------YCYDLRN--ARAPWCVLAGHEKAVSYVK 964
LLA F D+ YC +L N +R GH V V
Sbjct: 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889
Query: 965 FL-DSGTLVTASTDNKLKLWDLKRT 988
F D + +TAS D +++W+ K+
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKV 914
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLA 888
+++SC C + +++ Y+A D DG +K+ + + S + H+K + F+ T L
Sbjct: 962 AQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT-LI 1019
Query: 889 SGSDDCSVKLWN 900
S S+D +++WN
Sbjct: 1020 SSSEDSVIQVWN 1031
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI-- 901
L S+ D V+++W+ TG V E DF + ++L S S D +VK+WN+
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVK---DFRLLQDSRLLSWSFDGTVKVWNVIT 1074
Query: 902 -NEKNSLATIKNIANVCCV-----QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG 955
+ + C + +FS+ S+ A + + +DL +P L G
Sbjct: 1075 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA------KIWSFDL---LSPLHELKG 1125
Query: 956 HEKAVSYVKFLDSGTLVTASTDN-KLKLWDL 985
H V F G L+ DN ++++W++
Sbjct: 1126 HNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Query: 870 HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIAN-VCCVQFSAHSSHL 928
H + FSQ ++AS D +++++ L IK + V C FS+ S++
Sbjct: 614 HTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI 672
Query: 929 LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGT---LVTASTDNKLKLWDL 985
A SAD + +D + H + V+ F + L T S D LKLWDL
Sbjct: 673 -ATCSADKKVKIWDSATGKLVH-TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 986 KRTSHTGPSTNACSLTFSGHTNEKVGICRL 1015
+ C T GHTN V CR
Sbjct: 731 NQ--------KECRNTMFGHTNS-VNHCRF 751
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 787 FDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLAS 846
F +D A+ G K +++F+ + +++ C + +Y+A+
Sbjct: 630 FSQDGQRIASCGADKTLQVFK--------AETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 681
Query: 847 ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS-QVHPTKLASGSDDCSVKLWNINEK- 904
D VK+WD+ TG+ V Y EH ++ F+ + + LA+GS+D +KLW++N+K
Sbjct: 682 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Query: 905 --NSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
N++ N N C +FS LLA SAD +D+R+A
Sbjct: 742 CRNTMFGHTNSVNHC--RFSP-DDELLASCSADGTLRLWDVRSA 782
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
L S +DG VK+W+ TG+ + H+ S S TK +S S D + K+W+ +
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDL 1123
Query: 904 KNSLATIKNIANVCCVQFSAHS--SHLLAFGSADYRTYCYDLRNAR-----APWCVLAG- 955
+ L +K + CV+ SA S LLA G + +++ + + AP V G
Sbjct: 1124 LSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1181
Query: 956 --HEKAVSYVKFL-DSGTLVTASTDNKLKLWDL 985
H V+ V F DS TLV+A LK W++
Sbjct: 1182 ATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNV 1212
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 914 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLV 972
A V C S H ++ AFG D +L N R + GH+KAV +++F D TL+
Sbjct: 969 AQVSCCCLSPHLEYV-AFGDEDGAIKIIELPNNRV-FSSGVGHKKAVRHIQFTADGKTLI 1026
Query: 973 TASTDNKLKLWD 984
++S D+ +++W+
Sbjct: 1027 SSSEDSVIQVWN 1038
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 95/265 (35%), Gaps = 67/265 (25%)
Query: 781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
V+C +F D+ + A KK+KI++ + V Y E N C N
Sbjct: 667 VLCC-AFSSDDSYIATCSADKKVKIWD--SATGKLVHTYDEHSEQVN----CCHFTNKSN 719
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKL 898
LA+ D +KLWD + + H SV+ + P LAS S D +++L
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTN---SVNHCRFSPDDELLASCSADGTLRL 776
Query: 899 WNINEKNSLATIK---------------NIANVCC-----------------VQFSAHSS 926
W++ N +I + CC + F H+S
Sbjct: 777 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 836
Query: 927 HLLA--------------FGSADYRT------YCYDLRN--ARAPWCVLAGHEKAVSYVK 964
LLA F D+ YC +L N +R GH V V
Sbjct: 837 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 896
Query: 965 FL-DSGTLVTASTDNKLKLWDLKRT 988
F D + +TAS D +++W+ K+
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKV 921
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLA 888
+++SC C + +++ Y+A D DG +K+ + + S + H+K + F+ T L
Sbjct: 969 AQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT-LI 1026
Query: 889 SGSDDCSVKLWN 900
S S+D +++WN
Sbjct: 1027 SSSEDSVIQVWN 1038
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI-- 901
L S+ D V+++W+ TG V E DF + ++L S S D +VK+WN+
Sbjct: 1025 LISSSEDSVIQVWNWQTGDYVFLQAHQETVK---DFRLLQDSRLLSWSFDGTVKVWNVIT 1081
Query: 902 -NEKNSLATIKNIANVCCV-----QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG 955
+ + C + +FS+ S+ A + + +DL +P L G
Sbjct: 1082 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA------KIWSFDL---LSPLHELKG 1132
Query: 956 HEKAVSYVKFLDSGTLVTASTDN-KLKLWDL 985
H V F G L+ DN ++++W++
Sbjct: 1133 HNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Query: 870 HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIAN-VCCVQFSAHSSHL 928
H + FSQ ++AS D +++++ L IK + V C FS+ S++
Sbjct: 621 HTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI 679
Query: 929 LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGT---LVTASTDNKLKLWDL 985
A SAD + +D + H + V+ F + L T S D LKLWDL
Sbjct: 680 -ATCSADKKVKIWDSATGKLVH-TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 986 KRTSHTGPSTNACSLTFSGHTNEKVGICRL 1015
+ C T GHTN V CR
Sbjct: 738 NQ--------KECRNTMFGHTNS-VNHCRF 758
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSF 551
Q+ K Y SPE++ G + +I+SLG++ FEL F ++ ++D+R+ P F
Sbjct: 236 QVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPLLF 295
Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQSEV 584
+ P+E L P P RP +I+++ +
Sbjct: 296 TQKYPQEHMMVQDMLSPSPTERPEATDIIENAI 328
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 314 NLREWLNARGHKGKRIE--CLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK 369
NL++W+N R R CL+IF QI V++ H++G+ DLKPS+ + VK
Sbjct: 147 NLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVK 204
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N+ SA +D ++LW+ GQ ++ H K SV FS + ++ SG D ++++WN+
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN-RQIVSGGRDNALRVWNV 138
Query: 902 NEK--NSLATIKNIANVCCVQFSAH-SSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
+ ++L+ + V CV+FS + ++ G D +DL R L GH
Sbjct: 139 KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV-TDLKGHTN 197
Query: 959 AVSYVKFLDSGTLVTAS-TDNKLKLWDLKR 987
V+ V G+L +S D +LWDL +
Sbjct: 198 YVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 87/212 (41%), Gaps = 17/212 (8%)
Query: 782 ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIK 841
+ S++F D + G ++++ + + ++ +SCV ++ +
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKG------ECMHTLSRGAHTDWVSCVRFSPSLD 165
Query: 842 N-YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
+ S +D +VK+WD TG+ V+ H SV S + AS D +LW+
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWD 224
Query: 901 INEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE--- 957
+ + +L+ + A + + FS + + A R + DL N + H+
Sbjct: 225 LTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIF--DLENKDIIVELAPEHQGSK 282
Query: 958 ----KAVSYVKFLDSGTLVTASTDNKLKLWDL 985
+ VS D TL + TDN +++W +
Sbjct: 283 KIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
+ S +DG ++LWD G + ++ H K SV FS + ++ S S D ++KLW
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLW--- 499
Query: 903 EKNSLATIKNIAN---------VCCVQFSAHSSH-LLAFGSADYRTYCYDLRNARAPWCV 952
N+L K + V CV+FS ++ + S D ++L N +
Sbjct: 500 --NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-ST 556
Query: 953 LAGHEKAVSYVKFLDSGTL-VTASTDNKLKLWDL 985
LAGH VS V G+L + D + LWDL
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 27/244 (11%)
Query: 764 FEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV 823
+++ + T F + S++F D +A + IK L+N + Y
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK------LWNTLGECKYTIS 510
Query: 824 EMS--NRSKLSCVCWN-NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS 880
E +R +SCV ++ N ++ + SA +D VK+W+ + S H +V S
Sbjct: 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570
Query: 881 QVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFS-------AHSSHLLAFGS 933
+ ASG D V LW++ E L +++ + + + FS A + H +
Sbjct: 571 P-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWD 629
Query: 934 ADYRTYCYDLR------NARAPWCVLAGHEKAVSYVKFL----DSGTLVTASTDNKLKLW 983
+ ++ DL+ +A A ++ V Y L D TL + TD +++W
Sbjct: 630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Query: 984 DLKR 987
+ R
Sbjct: 690 GIGR 693
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
S D KLWD G + HE ++ F + A+GSDD + +L+++
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 268
Query: 904 KNSLATIKN---IANVCCVQFSAHSSHLLAFGSADYRTYCYD-LRNARAPWCVLAGHEKA 959
L T + I + V FS S LL G D+ +D L+ RA VLAGH+
Sbjct: 269 DQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKADRAG--VLAGHDNR 325
Query: 960 VSYVKFLDSGTLV-TASTDNKLKLWD 984
VS + D G V T S D+ LK+W+
Sbjct: 326 VSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 42/172 (24%)
Query: 887 LASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
L S S D + +W+ N + I ++ A S + +A G D Y+L+
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 140
Query: 947 RAPWCV---LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLK-------RTSHTG---- 992
V LAGH +S +FLD +VT+S D LWD++ T HTG
Sbjct: 141 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 200
Query: 993 ----PST-------------------NACSLTFSGHTNEKVGICRLEHNLFP 1021
P T C TF+GH ++ IC FP
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC-----FFP 247
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
S D KLWD G + HE ++ F + A+GSDD + +L+++
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 257
Query: 904 KNSLATIKN---IANVCCVQFSAHSSHLLAFGSADYRTYCYD-LRNARAPWCVLAGHEKA 959
L T + I + V FS S LL G D+ +D L+ RA VLAGH+
Sbjct: 258 DQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKADRAG--VLAGHDNR 314
Query: 960 VSYVKFLDSGTLV-TASTDNKLKLWD 984
VS + D G V T S D+ LK+W+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 42/172 (24%)
Query: 887 LASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
L S S D + +W+ N + I ++ A S + +A G D Y+L+
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 947 RAPWCV---LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLK-------RTSHTG---- 992
V LAGH +S +FLD +VT+S D LWD++ T HTG
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 993 ----PST-------------------NACSLTFSGHTNEKVGICRLEHNLFP 1021
P T C TF+GH ++ IC FP
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC-----FFP 236
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
S D KLWD G + HE ++ F + A+GSDD + +L+++
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 257
Query: 904 KNSLATIKN---IANVCCVQFSAHSSHLLAFGSADYRTYCYD-LRNARAPWCVLAGHEKA 959
L T + I + V FS S LL G D+ +D L+ RA VLAGH+
Sbjct: 258 DQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKADRAG--VLAGHDNR 314
Query: 960 VSYVKFLDSGTLV-TASTDNKLKLWD 984
VS + D G V T S D+ LK+W+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 42/172 (24%)
Query: 887 LASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
L S S D + +W+ N + I ++ A S + +A G D Y+L+
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 947 RAPWCV---LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLK-------RTSHTG---- 992
V LAGH +S +FLD +VT+S D LWD++ T HTG
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 993 ----PST-------------------NACSLTFSGHTNEKVGICRLEHNLFP 1021
P T C TF+GH ++ IC FP
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC-----FFP 236
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
S D KLWD G + HE ++ F + A+GSDD + +L+++
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 257
Query: 904 KNSLATIKN---IANVCCVQFSAHSSHLLAFGSADYRTYCYD-LRNARAPWCVLAGHEKA 959
L T + I + V FS S LL G D+ +D L+ RA VLAGH+
Sbjct: 258 DQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKADRAG--VLAGHDNR 314
Query: 960 VSYVKFLDSGTLV-TASTDNKLKLWD 984
VS + D G V T S D+ LK+W+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 42/172 (24%)
Query: 887 LASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
L S S D + +W+ N + I ++ A S + +A G D Y+L+
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 947 RAPWCV---LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLK-------RTSHTG---- 992
V LAGH +S +FLD +VT+S D LWD++ T HTG
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 993 ----PST-------------------NACSLTFSGHTNEKVGICRLEHNLFP 1021
P T C TF+GH ++ IC FP
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC-----FFP 236
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
S D KLWD G + HE ++ F + A+GSDD + +L+++
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 257
Query: 904 KNSLATIKN---IANVCCVQFSAHSSHLLAFGSADYRTYCYD-LRNARAPWCVLAGHEKA 959
L T + I + V FS S LL G D+ +D L+ RA VLAGH+
Sbjct: 258 DQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKADRAG--VLAGHDNR 314
Query: 960 VSYVKFLDSGTLV-TASTDNKLKLWD 984
VS + D G V T S D+ LK+W+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 42/172 (24%)
Query: 887 LASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
L S S D + +W+ N + I ++ A S + +A G D Y+L+
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 947 RAPWCV---LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLK-------RTSHTG---- 992
V LAGH +S +FLD +VT+S D LWD++ T HTG
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 993 ----PST-------------------NACSLTFSGHTNEKVGICRLEHNLFP 1021
P T C TF+GH ++ IC FP
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC-----FFP 236
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 43/244 (17%)
Query: 772 TGEFNNS----ANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSN 827
TG+F + + + ISFD A+ IK+++F + + + N
Sbjct: 139 TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHG--HDHN 194
Query: 828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP--- 884
S +S + ++I SA D +K+W+ TG V + H R W V P
Sbjct: 195 VSSVSIMPNGDHI----VSASRDKTIKMWEVQTGYCVKTFTGH--REW---VRMVRPNQD 245
Query: 885 -TKLASGSDDCSVKLWNINEKNSLATIKNIANVC-CVQFSAHSSH--------------- 927
T +AS S+D +V++W + K A ++ +V C+ ++ SS+
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 928 ----LLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNK-LKL 982
L GS D +D+ L GH+ V V F G + + D+K L++
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 983 WDLK 986
WD K
Sbjct: 365 WDYK 368
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK-LASGSDDCSVKLWNIN 902
+ SA D +K+WD TG H + F H K LAS S D ++KLW+
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLWDFQ 180
Query: 903 EKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV--LAGHEKA 959
+ T+ + NV V + H+++ S D ++++ +CV GH +
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVS-ASRDKTIKMWEVQTG---YCVKTFTGHREW 236
Query: 960 VSYVKFLDSGTLV-TASTDNKLKLW 983
V V+ GTL+ + S D +++W
Sbjct: 237 VRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
+L S D +K+WD TG + + H+ V F L S +DD ++++W+
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYK 368
Query: 903 EKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLR 944
K + T+ + V + F + +++ GS D ++ R
Sbjct: 369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVT-GSVDQTVKVWECR 410
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT--KLASGSDDCSVKLW 899
N S D +WD +GQ V + HE SV + +P+ ASGSDD + +L+
Sbjct: 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY---YPSGDAFASGSDDATCRLY 267
Query: 900 NINEKNSLATIKN---IANVCCVQFSAHSSHLLAFGSADYRTYCYD-LRNARAPWCVLAG 955
++ +A I V FS S LL G DY +D L+ +R +L G
Sbjct: 268 DLRADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVS--ILFG 324
Query: 956 HEKAVSYVKFLDSGT-LVTASTDNKLKLW 983
HE VS ++ GT + S D+ L++W
Sbjct: 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 16/182 (8%)
Query: 844 LASADYDGVVKLWDACTGQTVSH---YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
+ + D + +WD + ++ + H VDF + + S S D ++K+WN
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY---IVSASGDRTIKVWN 282
Query: 901 INEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
+ + T+ + + C+Q+ L+ GS+D +D+ A VL GHE+
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEEL 338
Query: 960 VSYVKFLDSGTLVTASTDNKLKLWDL-KRTSHTGPSTNACSLTFSGHTNEKVGICRLEHN 1018
V ++F D+ +V+ + D K+K+WDL P+ C T H+ + RL+ +
Sbjct: 339 VRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR---VFRLQFD 394
Query: 1019 LF 1020
F
Sbjct: 395 EF 396
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
Y SA +D ++LWD TG+T ++ H+ SVD + + + SGS D ++K+W I
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK-KASXIISGSRDKTIKVWTI- 136
Query: 903 EKNSLATIKN----IANVCCVQFSAHSSHLLAFGSA--DYRTYCYDLRNARAPWCVLAGH 956
+ LAT+ ++ V V + SA D ++L + GH
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE-ADFIGH 195
Query: 957 EKAVSYVKFLDSGTLV-TASTDNKLKLWDL--KRTSHTGPSTNAC-SLTFS 1003
++ + GTL+ +A D ++ LW+L K+ +T + + SL FS
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFS 246
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
+ SA D VK W+ Q + +I H ++ S T +AS D + LWN+
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAA 227
Query: 904 KNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD-------LRNARAPWCVLAGH 956
K + T+ V + FS + L A + + + D LR A + A
Sbjct: 228 KKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK-AAE 286
Query: 957 EKAVSYVKFLDSGTLVTASTDNKLKLWDL 985
AVS D TL TDN +++W +
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 42/215 (19%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYI---------EH-EKRAWSVDFSQVHP---TKLAS 889
Y+ S DGV+ L+D S+Y +H + +SV+ Q +P S
Sbjct: 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117
Query: 890 GSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSH---------LLAFGSADYRTYC 940
S D ++K+W + N+L T A+V + + +S H L+A G+ +
Sbjct: 118 SSFDKTLKVW---DTNTLQT----ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 941 YDLRNARAPWCVLAGHEK---AVSYVKFLDSGTLVTASTDNKLKLWDLKRTS-------- 989
DL++ +L GH + AVS+ D L TAS D+++KLWD++R S
Sbjct: 171 CDLKSGSCSH-ILQGHRQEILAVSWSPRYDY-ILATASADSRVKLWDVRRASGCLITLDQ 228
Query: 990 HTGPSTNACSLTFSGHTNEKVGICRLEHNLFPFTI 1024
H G + A + H + G+C L T+
Sbjct: 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 24/179 (13%)
Query: 827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK 886
+R + V W + S+ +D +K+WD T QT + E+ +S S V
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKH 156
Query: 887 --LASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDL 943
+A G+ V+L ++ + ++ + + V +S ++LA SAD R +D+
Sbjct: 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 944 RNARAPWCVL-----------------AGHEKAVSYVKFLDSGT-LVTASTDNKLKLWD 984
R RA C++ H V+ + F G L+T TDN+++LW+
Sbjct: 217 R--RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating
80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
Y SA +D ++LWD TG+T ++ H+ SVD + + + SGS D ++K+W I
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 136
Query: 903 EKNSLATIKN----IANVCCV---QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG 955
+ LAT+ ++ V V + S +++ G+ D ++L + G
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIE-ADFIG 194
Query: 956 HEKAVSYVKFLDSGTLV-TASTDNKLKLWDL--KRTSHTGPSTNAC-SLTFS 1003
H ++ + GTL+ +A D ++ LW+L K+ +T + + SL FS
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP--TKLASGSDDCSVKLWNI 901
+ SA D +VK W+ Q + +I H +++ P T +AS D + LWN+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 902 NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD---LRNARAPWCVLAGHEK 958
K ++ T+ V + FS + L A + + + D L + P AG+ K
Sbjct: 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSK 283
Query: 959 A-----VSYVKFLDSGTLVTASTDNKLKLWDL 985
A VS D TL TDN +++W +
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
Y SA +D ++LWD TG+T ++ H+ SVD + + + SGS D ++K+W I
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 136
Query: 903 EKNSLATIKN----IANVCCV---QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG 955
+ LAT+ ++ V V + S +++ G+ D ++L + G
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIE-ADFIG 194
Query: 956 HEKAVSYVKFLDSGTLV-TASTDNKLKLWDL--KRTSHTGPSTNAC-SLTFS 1003
H ++ + GTL+ +A D ++ LW+L K+ +T + + SL FS
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP--TKLASGSDDCSVKLWNI 901
+ SA D +VK W+ Q + +I H +++ P T +AS D + LWN+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 902 NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD---LRNARAPWCVLAGHEK 958
K ++ T+ V + FS + L A + + + D L + P AG+ K
Sbjct: 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSK 283
Query: 959 A-----VSYVKFLDSGTLVTASTDNKLKLWDL 985
A VS D TL TDN +++W +
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
Y SA +D ++LWD TG+T ++ H+ SVD + + + SGS D ++K+W I
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 136
Query: 903 EKNSLATIKN----IANVCCV---QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG 955
+ LAT+ ++ V V + S +++ G+ D ++L + G
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIE-ADFIG 194
Query: 956 HEKAVSYVKFLDSGTLV-TASTDNKLKLWDL--KRTSHTGPSTNAC-SLTFS 1003
H ++ + GTL+ +A D ++ LW+L K+ +T + + SL FS
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP--TKLASGSDDCSVKLWNI 901
+ SA D +VK W+ Q + +I H +++ P T +AS D + LWN+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 902 NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD-------LRNARAPWCVLA 954
K ++ T+ V + FS + L A + + + D LR A + A
Sbjct: 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSA-A 284
Query: 955 GHEKAVSYVKFLDSGTLVTASTDNKLKLWDL 985
AVS D TL TDN +++W +
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
Y SA +D ++LWD TG+T ++ H+ SVD + + + SGS D ++K+W I
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 136
Query: 903 EKNSLATIKN----IANVCCV---QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG 955
+ LAT+ ++ V V + S +++ G+ D ++L + G
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIE-ADFIG 194
Query: 956 HEKAVSYVKFLDSGTLV-TASTDNKLKLWDL--KRTSHTGPSTNAC-SLTFS 1003
H ++ + GTL+ +A D ++ LW+L K+ +T + + SL FS
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP--TKLASGSDDCSVKLWNI 901
+ SA D +VK W+ Q + +I H +++ P T +AS D + LWN+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 902 NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD---LRNARAPWCVLAGHEK 958
K ++ T+ V + FS + L A + + + D L + P AG+ K
Sbjct: 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSK 283
Query: 959 A-----VSYVKFLDSGTLVTASTDNKLKLW 983
A VS D TL TDN +++W
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
Y SA +D ++LWD TG+T ++ H+ SVD + + + SGS D ++K+W I
Sbjct: 73 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 130
Query: 903 EKNSLATIKN----IANVCCV---QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG 955
+ LAT+ ++ V V + S +++ G+ D ++L + G
Sbjct: 131 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIE-ADFIG 188
Query: 956 HEKAVSYVKFLDSGTLV-TASTDNKLKLWDL--KRTSHTGPSTNAC-SLTFS 1003
H ++ + GTL+ +A D ++ LW+L K+ +T + + SL FS
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 240
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP--TKLASGSDDCSVKLWNI 901
+ SA D +VK W+ Q + +I H +++ P T +AS D + LWN+
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLTASPDGTLIASAGKDGEIMLWNL 219
Query: 902 NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD---LRNARAPWCVLAGHEK 958
K ++ T+ V + FS + L A + + + D L + P AG+ K
Sbjct: 220 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSK 277
Query: 959 A-----VSYVKFLDSGTLVTASTDNKLKLWDL 985
A VS D TL TDN +++W +
Sbjct: 278 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 843 YLASADYDGVVKLWDACTGQ----TVSHYIEHEKRAWSVDFSQVHPTKLASG--SDDCSV 896
+LAS D +V +W + G+ + + +H+ +V + LA+G + D +
Sbjct: 255 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 314
Query: 897 KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLA---FGSADYRTYCYDLRNARAPWCVL 953
++WN+ L+ + + VC + +S H L++ F + Y A L
Sbjct: 315 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE---L 371
Query: 954 AGH-EKAVSYVKFLDSGTLVTASTDNKLKLW 983
GH + +S D T+ +A+ D L+LW
Sbjct: 372 KGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ 881
A E+ N L+ V W++ N LA A D V LW A +G + + + +
Sbjct: 110 APEIRNDYYLNLVDWSS--GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAW 166
Query: 882 VHPTK-LASGSDDCSVKLWNINEKNSLATI-KNIANVCCVQFSAHSSHLLAFGSADYRTY 939
+ LA G+ V+LW++ ++ L + + A V + ++ S++L+ GS +
Sbjct: 167 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIH 223
Query: 940 CYDLRNARAPWCVLAGHEKAVSYVKFLDSGT-LVTASTDNKLKLW 983
+D+R A L+GH + V +++ G L + DN + +W
Sbjct: 224 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 843 YLASADYDGVVKLWDACTGQ----TVSHYIEHEKRAWSVDFSQVHPTKLASG--SDDCSV 896
+LAS D +V +W + G+ + + +H+ +V + LA+G + D +
Sbjct: 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303
Query: 897 KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLA---FGSADYRTYCYDLRNARAPWCVL 953
++WN+ L+ + + VC + +S H L++ F + Y A L
Sbjct: 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE---L 360
Query: 954 AGH-EKAVSYVKFLDSGTLVTASTDNKLKLW 983
GH + +S D T+ +A+ D L+LW
Sbjct: 361 KGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ 881
A E+ N L+ V W++ N LA A D V LW A +G + + + +
Sbjct: 99 APEIRNDYYLNLVDWSS--GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAW 155
Query: 882 VHPTK-LASGSDDCSVKLWNINEKNSLATI-KNIANVCCVQFSAHSSHLLAFGSADYRTY 939
+ LA G+ V+LW++ ++ L + + A V + ++ S++L+ GS +
Sbjct: 156 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIH 212
Query: 940 CYDLRNARAPWCVLAGHEKAVSYVKFLDSGT-LVTASTDNKLKLW 983
+D+R A L+GH + V +++ G L + DN + +W
Sbjct: 213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPK 557
Y SPE++S ++Y+LG++ EL D+ + +DLRD I+ F + K
Sbjct: 187 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIF---DKK 243
Query: 558 EAGFCLWQLHPEPLSRPTTREILQS 582
E L +P RP T EIL++
Sbjct: 244 EKTLLQKLLSKKPEDRPNTSEILRT 268
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 315 LREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK 369
L +W+ R G K ++ L +F QI VDY H++ + DLKPS+ L+ + QVK
Sbjct: 107 LEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVK 162
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPK 557
Y SPE++S ++Y+LG++ EL D+ + +DLRD I+ F + K
Sbjct: 201 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIF---DKK 257
Query: 558 EAGFCLWQLHPEPLSRPTTREILQS 582
E L +P RP T EIL++
Sbjct: 258 EKTLLQKLLSKKPEDRPNTSEILRT 282
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 315 LREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK 369
L +W+ R G K ++ L +F QI VDY H++ + DLKPS+ L+ + QVK
Sbjct: 121 LEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNIFLVDTKQVK 176
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 840 IKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW 899
I N + AD DG + + TG H+ A S + T+L +GS D + LW
Sbjct: 134 IFNLSSQADRDGNMPVSRVLTG--------HKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 900 NINEKNSLATIK------NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL 953
++ ++ + A+V + ++ ++++ GS D +DLR
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245
Query: 954 AGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSH 990
GHE ++ VKF G T S D +L+D+ RT H
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM-RTGH 282
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 916 VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS 975
+ C+QF + + G+ D YD N + L+GH+ V +K+ G LV+ S
Sbjct: 125 ITCLQFE---DNYVITGADDKMIRVYDSINKKFL-LQLSGHDGGVWALKYAHGGILVSGS 180
Query: 976 TDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005
TD +++WD+K+ C+ F GH
Sbjct: 181 TDRTVRVWDIKK--------GCCTHVFEGH 202
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 79/197 (40%), Gaps = 37/197 (18%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK-LASGSDDCSVKLWNIN 902
L S D V++WD G + H +D + K + +GS D ++ +W +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 903 EKNSL-----------------------ATIKNIANVCCVQFSAHSSHLLAFGSADYRTY 939
+++S+ ++ ++ V+ + +++ GS D
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLR--GHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 940 CYDLRNARAPWCVLAGH-EKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNAC 998
+D+ + + +L+GH ++ S + + ++AS D +++WDL+
Sbjct: 294 VWDVAQMKCLY-ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE--------NGEL 344
Query: 999 SLTFSGHTNEKVGICRL 1015
T GHT VG+ RL
Sbjct: 345 MYTLQGHT-ALVGLLRL 360
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 916 VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS 975
+ C+QF + + G+ D YD N + L+GH+ V +K+ G LV+ S
Sbjct: 125 ITCLQFE---DNYVITGADDKXIRVYDSINKKFL-LQLSGHDGGVWALKYAHGGILVSGS 180
Query: 976 TDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005
TD +++WD+K+ C+ F GH
Sbjct: 181 TDRTVRVWDIKK--------GCCTHVFEGH 202
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 48/178 (26%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
NY+ + D ++++D+ + + H+ W++ ++ H L SGS D +V++W+I
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDI 190
Query: 902 NEKNSLATIKNIANVCCVQ-FSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAV 960
+ CC F H+S + +Y+ Y
Sbjct: 191 KKG------------CCTHVFEGHNSTVRCLDIVEYKNIKY------------------- 219
Query: 961 SYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK----VGICR 1014
+VT S DN L +W L + S HT E+ VG+ R
Sbjct: 220 ----------IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 5/145 (3%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
N + S YD + +WD + + H R +S + + S S D ++++W++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDH-ERKRCISASXDTTIRIWDL 339
Query: 902 NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVS 961
T++ + V S L +AD +D + + H +
Sbjct: 340 ENGELXYTLQ--GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSA 395
Query: 962 YVKFLDSGTLVTASTDNKLKLWDLK 986
F S ++ + ++N+ +++L+
Sbjct: 396 ITTFYVSDNILVSGSENQFNIYNLR 420
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 843 YLASADYDGVVKLWDACTGQ----TVSHYIEHEKRAWSVDFSQVHPTKLASG--SDDCSV 896
+LAS D +V +W + G+ + + +H+ +V + LA+G + D +
Sbjct: 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223
Query: 897 KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLA---FGSADYRTYCYDLRNARAPWCVL 953
++WN+ L+ + + VC + +S H L++ F + Y A L
Sbjct: 224 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE---L 280
Query: 954 AGH-EKAVSYVKFLDSGTLVTASTDNKLKLW 983
GH + +S D T+ +A+ D L+LW
Sbjct: 281 KGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ 881
A E+ N L+ V W++ N LA A D V LW A +G + + + +
Sbjct: 19 APEIRNDYYLNLVDWSS--GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAW 75
Query: 882 VHPTK-LASGSDDCSVKLWNINEKNSLATI-KNIANVCCVQFSAHSSHLLAFGSADYRTY 939
+ LA G+ V+LW++ ++ L + + A V + ++ S++L+ GS +
Sbjct: 76 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIH 132
Query: 940 CYDLRNARAPWCVLAGHEKAVSYVKFLDSGT-LVTASTDNKLKLW 983
+D+R A L+GH + V +++ G L + DN + +W
Sbjct: 133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 776 NNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVC 835
N ++ + +++F R + + + +KI++F N+ + +R L CV
Sbjct: 188 NADSSTLHAVTFLRTPEILTVNSIGQ-LKIWDFRQQGNEPSQILS---LTGDRVPLHCVD 243
Query: 836 WNNYIKNYLASADYDGVVKLWDACTG-QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
+ ++ +A+ DG++ +WD G VS HE W V F +P L + S+D
Sbjct: 244 RHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDG 303
Query: 895 SVKLW----NINEKNSL 907
S+ W ++ EK+SL
Sbjct: 304 SLWHWDASTDVPEKSSL 320
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 896 VKLWNINEKNS-----LATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPW 950
+K+W+ ++ + L+ + + CV + H++A G D +D+R P
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 951 CVLAGHEKAVSYVKFLDSGT--LVTASTDNKLKLWD 984
+L HE + V F S L T S D L WD
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 54/169 (31%)
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHPTKLASGSDDCSVKLW 899
K Y+ S D VKLW+ + E HE V F+ P+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 900 NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
++ + T+ G E+
Sbjct: 169 SLGQSTPNFTLT------------------------------------------TGQERG 186
Query: 960 VSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005
V+YV + D ++TAS D +K+WD + T +C T GH
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGH 227
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 54/169 (31%)
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHPTKLASGSDDCSVKLW 899
K Y+ S D VKLW+ + E HE V F+ P+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 900 NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
++ + T+ G E+
Sbjct: 169 SLGQSTPNFTLT------------------------------------------TGQERG 186
Query: 960 VSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005
V+YV + D ++TAS D +K+WD + T +C T GH
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGH 227
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 814
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 54/169 (31%)
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHPTKLASGSDDCSVKLW 899
K Y+ S D VKLW+ + E HE V F+ P+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 900 NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
++ + T+ G E+
Sbjct: 169 SLGQSTPNFTLT------------------------------------------TGQERG 186
Query: 960 VSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005
V+YV + D ++TAS D +K+WD + T +C T GH
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGH 227
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 54/169 (31%)
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHPTKLASGSDDCSVKLW 899
K Y+ S D VKLW+ + E HE V F+ P+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 900 NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
++ + T+ G E+
Sbjct: 169 SLGQSTPNFTLT------------------------------------------TGQERG 186
Query: 960 VSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005
V+YV + D ++TAS D +K+WD + T +C T GH
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGH 227
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 844 LASADYDGVVKLWDACTG--QTVSHYIEHEKRAWSVDFSQVHPT-KLASGSDDCSVKLW 899
LAS+ YD V++W + V+ HE WS DF + +L SGSDD +V++W
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 44/233 (18%)
Query: 761 YSKFEVQGMLRT-GEFNNSANVICSISFDRDEDH-FAAAGVSKKIKIFEFNALFNDSVDV 818
YS E + + F+N ++ + ++ F+ +D+ A+ G + +I I++ N +S
Sbjct: 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC-TESPSN 152
Query: 819 YYPAV---EMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAW 875
Y P MS+ ++ + WN + + ASA +WD + V H
Sbjct: 153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH--------- 203
Query: 876 SVDFSQVHPTKLASG-SDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSA 934
S P SG SV W+ +AT N
Sbjct: 204 ---LSYTSPN---SGIKQQLSVVEWHPKNSTRVATATGSDN------------------- 238
Query: 935 DYRTYCYDLRNARAPWCVL-AGHEKAVSYVKFL--DSGTLVTASTDNKLKLWD 984
D +DLRNA P L GH+K + + + D L+++ DN + LW+
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
L S D +W + G+ + H WS+D +GS D S+KLW+++
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV-DCFTKYCVTGSADYSIKLWDVSN 105
Query: 904 KNSLATIKNIANVCCVQFSAHSSHLLAF 931
+AT K+ V V+FS ++ LA
Sbjct: 106 GQCVATWKSPVPVKRVEFSPCGNYFLAI 133
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 845 ASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK 904
AS+ D ++LWD G+ + AW++ FS LA+G+ V ++ +
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESG 154
Query: 905 NSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYV 963
++ + + +S + LA G+ D +D+ + L GH + +
Sbjct: 155 KKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLL-HTLEGHAMPIRSL 212
Query: 964 KFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTN 1007
F DS LVTAS D +K++D++ + G T SGH +
Sbjct: 213 TFSPDSQLLVTASDDGYIKIYDVQHANLAG--------TLSGHAS 249
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
YLAS DG++ ++D TG+ + H S+ FS L + SDD +K++++
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQ 236
Query: 903 EKNSLATIKNIAN-VCCVQFSAHSSHL 928
N T+ A+ V V F +H
Sbjct: 237 HANLAGTLSGHASWVLNVAFCPDDTHF 263
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
LA A G++++ + T Q + HY+ H + F P L S S D +++LWNI
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
Query: 904 KNSLATIKNI 913
+A +
Sbjct: 184 DTLVAIFGGV 193
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHY--IE-HEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
N L S D ++LW+ T V+ + +E H S D+ + ++ G D S+KL
Sbjct: 165 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKL 223
Query: 899 WNINEKNSLATIK 911
W IN K + IK
Sbjct: 224 WRINSKRMMNAIK 236
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
LA A G++++ + T Q + HY+ H + F P L S S D +++LWNI
Sbjct: 83 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
Query: 904 KNSLATIKNI 913
+A +
Sbjct: 143 DTLVAIFGGV 152
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHY--IE-HEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
N L S D ++LW+ T V+ + +E H S D+ + ++ G D S+KL
Sbjct: 124 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKL 182
Query: 899 WNINEKNSLATIK 911
W IN K + IK
Sbjct: 183 WRINSKRMMNAIK 195
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
LA A G++++ + T Q + HY+ H + F P L S S D +++LWNI
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 904 KNSLATIKNI 913
+A +
Sbjct: 147 DTLVAIFGGV 156
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHY--IE-HEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
N L S D ++LW+ T V+ + +E H S D+ + ++ G D S+KL
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKL 186
Query: 899 WNINEKNSLATIK 911
W IN K + IK
Sbjct: 187 WRINSKRMMNAIK 199
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 17/202 (8%)
Query: 841 KNYLASADYDGVVKLWDACTGQT--VSHYIEHEKRAWSVDFSQVHP-TKLASGSDDCSVK 897
+ L ++D G V+LW+ +T VS + ++E S + T+ SGS D +K
Sbjct: 94 RGILVASD-SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152
Query: 898 LWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP---WCVL 953
+W++ ++ L++ + + A V CV S H + S D R +D R + C
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA 212
Query: 954 AGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKVGIC 1013
G+ S V + + L D K TS C L+ + H+ G+
Sbjct: 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--------CVLSSAVHSQCVTGLV 264
Query: 1014 RLEHNLFPFTIFNLSDCWLLLV 1035
H++ PF DC L ++
Sbjct: 265 FSPHSV-PFLASLSEDCSLAVL 285
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
LA A G++++ + T Q + HY+ H + F P L S S D +++LWNI
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
Query: 904 KNSLATIKNI 913
+A +
Sbjct: 148 DTLVAIFGGV 157
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHY--IE-HEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
N L S D ++LW+ T V+ + +E H S D+ + ++ G D S+KL
Sbjct: 129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKL 187
Query: 899 WNINEKNSLATIK 911
W IN K + IK
Sbjct: 188 WRINSKRMMNAIK 200
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
LA A G++++ + T Q + HY+ H + F P L S S D +++LWNI
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 904 KNSLATIKNI 913
+A +
Sbjct: 147 DTLVAIFGGV 156
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHY--IE-HEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
N L S D ++LW+ T V+ + +E H S D+ + ++ G D S+KL
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKL 186
Query: 899 WNINEKNSLATIK 911
W IN K + IK
Sbjct: 187 WRINSKRMMNAIK 199
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 26/148 (17%)
Query: 770 LRTG----EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEM 825
LRTG F + + S++F D +AG ++IK L+N + + + E
Sbjct: 105 LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK------LWNILGECKFSSAEK 158
Query: 826 SNRSK-LSCVCWNNYIKN---------YLASADYDGVVKLWDACTGQTVSHYIEHEKRAW 875
N S +SCV ++ +K+ Y AS +DG +K+W+ Q + HE
Sbjct: 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES--- 214
Query: 876 SVDFSQVHPTK--LASGSDDCSVKLWNI 901
+V+ + P +A+G D + +W+I
Sbjct: 215 NVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 751 FFDGLCKYARYSKFEVQGMLRTGEFNNSANVICS-------ISFDRDEDHFAAAGVSKKI 803
F +C+ + F V + +TG + + ++C I++ D+ A+G S+
Sbjct: 46 FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASG-SEDC 104
Query: 804 KIFEFNALFNDSV-DVYYPAVEMSNRSK-LSCVCWNNYIKNYLASADYDGVVKLWDACTG 861
+ + V + P + + +K + V W+ +N L SA D V+ +WD TG
Sbjct: 105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164
Query: 862 QTVSHYIE--HEKRAWSVDFSQ 881
V H +SVD+S+
Sbjct: 165 AAVLTLGPDVHPDTIYSVDWSR 186
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 28/159 (17%)
Query: 842 NYLASADYDGVVKLWDA------CTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDD 893
NYLASA +D +W C H E + AW+ P+ LA+ S D
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-------PSGNLLATCSRD 126
Query: 894 CSVKLWNINEKNSLATIKNIANVCCVQFSAH-----SSHLLAFGSADYRTYCYDLRNARA 948
SV +W ++E++ + + + Q H S LLA S D Y R
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSH--TQDVKHVVWHPSQELLASASYDDTVKLY--REEED 182
Query: 949 PWCVLA---GHEKAVSYVKFLDSGT-LVTASTDNKLKLW 983
W A GHE V + F SG L + S D +++W
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 493 LEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAMSDLRDR 545
L +W A PE L GV TTSS+++S GV+ +E+ + +E+ L M
Sbjct: 193 LPVRWMA-PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDG--GY 249
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNEFQEV 591
+ P E + WQ +P+ RPT EI L+ ++ F EV
Sbjct: 250 LDQPDNCPERVTDLMRMCWQFNPK--MRPTFLEIVNLLKDDLHPSFPEV 296
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 493 LEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAMSDLRDR 545
L +W A PE L GV TTSS+++S GV+ +E+ + +E+ L M
Sbjct: 191 LPVRWMA-PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDG--GY 247
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNEFQEV 591
+ P E + WQ +P+ RPT EI L+ ++ F EV
Sbjct: 248 LDQPDNCPERVTDLMRMCWQFNPK--MRPTFLEIVNLLKDDLHPSFPEV 294
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 493 LEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAMSDLRDR 545
L +W A PE L GV TTSS+++S GV+ +E+ + +E+ L M
Sbjct: 194 LPVRWMA-PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDG--GY 250
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNEFQEV 591
+ P E + WQ +P+ RPT EI L+ ++ F EV
Sbjct: 251 LDQPDNCPERVTDLMRMCWQFNPK--MRPTFLEIVNLLKDDLHPSFPEV 297
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 493 LEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAMSDLRDR 545
L +W A PE L GV TTSS+++S GV+ +E+ + +E+ L M
Sbjct: 194 LPVRWMA-PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDG--GY 250
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNEFQEV 591
+ P E + WQ +P+ RPT EI L+ ++ F EV
Sbjct: 251 LDQPDNCPERVTDLMRMCWQFNPK--MRPTFLEIVNLLKDDLHPSFPEV 297
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 493 LEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAMSDLRDR 545
L +W A PE L GV TTSS+++S GV+ +E+ + +E+ L M
Sbjct: 194 LPVRWMA-PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDG--GY 250
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNEFQEV 591
+ P E + WQ +P+ RPT EI L+ ++ F EV
Sbjct: 251 LDQPDNCPERVTDLMRMCWQFNPK--MRPTFLEIVNLLKDDLHPSFPEV 297
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 17/176 (9%)
Query: 828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWS----------- 876
R+ + V WN ++ S D + V LW+ +G + H+ E S
Sbjct: 149 RAPIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 877 --VDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT-IKNIANVCCVQFSAHSSHLLAFGS 933
VD V K ++ ++ I EK I + + ++F+ ++ LL S
Sbjct: 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLLSAS 266
Query: 934 ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTS 989
D + N + C GH +++ ++ +++ S D ++LW LK+ +
Sbjct: 267 DDGTLRIWHGGNGNSQNC-FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT 321
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFE-LFGR--FDSERALAAAMSDLRDRI 546
Y SPE+ G ++IYS+G++ +E L G F+ E A++ A+ ++D +
Sbjct: 178 YFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSV 229
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 7/154 (4%)
Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD--DCSVKLWNI 901
LAS D VV++WDA + H +V + LA+G D + WN
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291
Query: 902 NEKNSLATIKNIANVCCVQFSAHSSHLLA---FGSADYRTYCYDLRNARAPWCVLAGHEK 958
+ T+ + V + +S HS +++ F + + Y + + H+
Sbjct: 292 ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS-SSGLTKQVDIPAHDT 350
Query: 959 AVSYVKFLDSG-TLVTASTDNKLKLWDLKRTSHT 991
V Y G L TA++D LK W + H
Sbjct: 351 RVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 853 VKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK-LASGSDDCSVKLWNINEKNSLATIK 911
V +W+A +G +VS E ++ + H L+ G + V ++++ + L T+
Sbjct: 115 VYVWNADSG-SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173
Query: 912 -NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSG- 969
+ A V C+ ++ H+L+ GS + +D+R A L GH V + + G
Sbjct: 174 GHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230
Query: 970 TLVTASTDNKLKLWDLK 986
L + DN +++WD +
Sbjct: 231 QLASGGNDNVVQIWDAR 247
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 493 LEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAMSDLRDR 545
L +W A PE L GV TTSS+++S GV+ +E+ + +E+ L M
Sbjct: 195 LPVRWMA-PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDG--GY 251
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNEFQEV 591
+ P E + WQ +P RPT EI L+ ++ F EV
Sbjct: 252 LDQPDNCPERVTDLMRMCWQFNPN--MRPTFLEIVNLLKDDLHPSFPEV 298
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 493 LEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAMSDLRDR 545
L +W A PE L GV TTSS+++S GV+ +E+ + +E+ L M
Sbjct: 194 LPVRWMA-PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDG--GY 250
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNEFQEV 591
+ P E + WQ +P RPT EI L+ ++ F EV
Sbjct: 251 LDQPDNCPERVTDLMRMCWQFNPN--MRPTFLEIVNLLKDDLHPSFPEV 297
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 493 LEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAMSDLRDR 545
L +W A PE L GV TTSS+++S GV+ +E+ + +E+ L M
Sbjct: 194 LPVRWMA-PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDG--GY 250
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNEFQEV 591
+ P E + WQ +P RPT EI L+ ++ F EV
Sbjct: 251 LDQPDNCPERVTDLMRMCWQFNPN--MRPTFLEIVNLLKDDLHPSFPEV 297
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 42/193 (21%)
Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVH------PTKLASGSDDC 894
+ YLA+ D+ G + +W+ + + ++ K + ++ +GS D
Sbjct: 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139
Query: 895 SVKLWNINEKNSLATIKNIANVCCVQF-SAHSSHLLAFGSA---DYRTYC---------- 940
+VK+W+ +K+ +AN+ VQ + +AFG+A + R C
Sbjct: 140 TVKVWDPRQKDD-----PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKL 194
Query: 941 YDLRNARAPW--------CVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTG 992
+DLRN W C L K +S K LV S + K ++D+ RT H
Sbjct: 195 FDLRNMALRWETNIKNGVCSLEFDRKDISMNK------LVATSLEGKFHVFDM-RTQH-- 245
Query: 993 PSTNACSLTFSGH 1005
P+ S++ H
Sbjct: 246 PTKGFASVSEKAH 258
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFG---RFDSERALAAAMSDLRDRILPPS 550
Y SPE+ G S++YSLG + +E+ F + ++ A +R+ +PPS
Sbjct: 202 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPS 257
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 334 IFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI 371
+FRQIV+ V Y H+QG DLKP + + +++K I
Sbjct: 113 VFRQIVSAVAYVHSQGYAHRDLKPENLLFDEYHKLKLI 150
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFG---RFDSERALAAAMSDLRDRILPPS 550
Y SPE+ G S++YSLG + +E+ F + ++ A +R+ +PPS
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPS 240
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFG---RFDSERALAAAMSDLRDRILPPS 550
Y SPE+ G S++YSLG + +E+ F + ++ A +R+ +PPS
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPS 240
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFG---RFDSERALAAAMSDLRDRILPPS 550
Y SPE+ G S++YSLG + +E+ F + ++ A +R+ +PPS
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPS 240
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 327 KRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK 369
+R E +FRQI+ + Y H+QG+ DLKP + + +S VK
Sbjct: 114 QRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVK 156
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 498 YASPEELSG-GVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRIL--PPSFLSE 554
Y + E L G G ++YSLG++FFE+ F + + LR + PP F
Sbjct: 196 YVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDFDDN 255
Query: 555 NPK-EAGFCLWQLHPEPLSRPTTREILQS 582
K E + +P RP R +L S
Sbjct: 256 KMKVEKKIIRLLIDHDPNKRPGARTLLNS 284
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFG---RFDSERALAAAMSDLRDRILPPS 550
Y SPE+ G S++YSLG + +E+ F + ++ A +R+ +PPS
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPS 240
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 327 KRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK 369
+R E +FRQI+ + Y H+QG+ DLKP + + +S VK
Sbjct: 114 QRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVK 156
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 498 YASPEELSG-GVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRIL--PPSFLSE 554
Y + E L G G ++YSLG++FFE+ F + + LR + PP F
Sbjct: 196 YVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDFDDN 255
Query: 555 NPK-EAGFCLWQLHPEPLSRPTTREILQS 582
K E + +P RP R +L S
Sbjct: 256 KMKVEKKIIRLLIDHDPNKRPGARTLLNS 284
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSF 551
+L KW A PE + V T S+++S G+ +ELF S S +++ F
Sbjct: 224 RLPVKWMA-PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY-KMIKEGF 281
Query: 552 LSENPKEAGFCLWQLH-----PEPLSRPTTREILQ 581
+P+ A ++ + +PL RPT ++I+Q
Sbjct: 282 RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 316
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSF 551
+L KW A PE + V T S+++S G+ +ELF S S +++ F
Sbjct: 208 RLPVKWMA-PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY-KMIKEGF 265
Query: 552 LSENPKEAGFCLWQLH-----PEPLSRPTTREILQ 581
+P+ A ++ + +PL RPT ++I+Q
Sbjct: 266 RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 300
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSF 551
+L KW A PE + V T S+++S G+ +ELF S S +++ F
Sbjct: 226 RLPVKWMA-PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY-KMIKEGF 283
Query: 552 LSENPKEAGFCLWQLH-----PEPLSRPTTREILQ 581
+P+ A ++ + +PL RPT ++I+Q
Sbjct: 284 RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 318
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSF 551
+L KW A PE + V T S+++S G+ +ELF S S +++ F
Sbjct: 231 RLPVKWMA-PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY-KMIKEGF 288
Query: 552 LSENPKEAGFCLWQLH-----PEPLSRPTTREILQ 581
+P+ A ++ + +PL RPT ++I+Q
Sbjct: 289 RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 323
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSF 551
+L KW A PE + V T S+++S G+ +ELF S S +++ F
Sbjct: 231 RLPVKWMA-PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY-KMIKEGF 288
Query: 552 LSENPKEAGFCLWQLH-----PEPLSRPTTREILQ 581
+P+ A ++ + +PL RPT ++I+Q
Sbjct: 289 RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 323
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 821 PAVEMSNRSK-LSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE--HEKRAWSV 877
P + + +K + V W+ +N L SA D V+ +WD TG V H +SV
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 878 DFSQ 881
D+S+
Sbjct: 183 DWSR 186
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 193 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 249
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 250 DNCPDMLLELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 292
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 191 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 247
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 248 DNCPDMLLELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 290
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 196 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 252
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 253 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 295
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 193 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 249
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 250 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 292
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 228 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 284
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 285 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 327
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 199 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 255
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 256 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 298
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFD 530
WYA PE LS + + S+++S GV+ +ELF D
Sbjct: 180 WYA-PESLSDNIFSRQSDVWSFGVVLYELFTYCD 212
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 199 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 255
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 256 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 298
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 481 TAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL--FGRFDSER 533
T + ST + +L KW A PE L +T S+++S G+L +E+ FGR R
Sbjct: 155 TKEASSTQDTGKLPVKWTA-PEALREAAFSTKSDVWSFGILLWEIYSFGRVPYPR 208
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 484 QQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF--GRF------DSERAL 535
Q +SV + KW ++PE ++ S++++ G+L +E+F G+ +SE L
Sbjct: 158 QYVSSVGTKFPVKW-SAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVL 216
Query: 536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS 582
+ R+ P S+ + + W H P RPT +++L S
Sbjct: 217 KVSQG---HRLYRPHLASDTIYQIMYSCW--HELPEKRPTFQQLLSS 258
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 5/150 (3%)
Query: 834 VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD 893
VC ++ + S +D K+W G V + H W K + S D
Sbjct: 107 VCSLSFQDGVVISGSWDKTAKVWKE--GSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164
Query: 894 CSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL 953
++KLW N+K + T I N + S D D
Sbjct: 165 KTIKLWQ-NDK-VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVL-RTY 221
Query: 954 AGHEKAVSYVKFLDSGTLVTASTDNKLKLW 983
GHE V +K L +G +V+ D +++W
Sbjct: 222 EGHESFVYCIKLLPNGDIVSCGEDRTVRIW 251
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 791 EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD 850
E+ F A K IK+++ ND V + + L+ V ++I S D
Sbjct: 155 ENKFLTASADKTIKLWQ-----NDKVIKTFSGIHNDVVRHLAVVDDGHFI-----SCSND 204
Query: 851 GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI 910
G++KL D TG + Y HE + + + + S +D +V++W+ E SL +
Sbjct: 205 GLIKLVDXHTGDVLRTYEGHESFVYCIKL--LPNGDIVSCGEDRTVRIWS-KENGSLKQV 261
Query: 911 KNIANVCCVQFSAHSSHLLAFGSAD 935
+ + S+ + GS+D
Sbjct: 262 ITLPAISIWSVDCXSNGDIIVGSSD 286
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 197 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 253
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 254 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 296
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 30/194 (15%)
Query: 838 NYIKNYLASADYDGVVKLWD--ACTGQTVSHYIEHEKRAWSVDFSQVHP---TKLASGSD 892
+Y LA+ D +K+++ T + + HE W VD++ HP T LAS S
Sbjct: 18 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA--HPKFGTILASCSY 75
Query: 893 DCSVKLWNI-NEKNSLATIKNI--ANVCCVQFSAHS-SHLLAFGSADYRTYCYDLR-NAR 947
D V +W N + S + + A+V VQ++ H LL S+D + + + N
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135
Query: 948 APWCVLAGHEKAVSYVKFL--------------DSGTLVTASTDNKLKLWDLKRTSHTGP 993
++ H V+ + +S VT DN +K+W ++
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY----NSDA 191
Query: 994 STNACSLTFSGHTN 1007
T T GH++
Sbjct: 192 QTYVLESTLEGHSD 205
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 200 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 256
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 257 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 299
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 200 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 256
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 257 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 299
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 206 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 262
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 263 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 305
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAM-SDLRDRILPP 549
+ SPE L GV TT S+++S GV+ +E+ + +E+ L M L D+ P
Sbjct: 206 WMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK---P 262
Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS---EVTNEFQEV 591
+ E WQ +P+ RP+ EI+ S E+ F+EV
Sbjct: 263 DNCPDMLFELMRMCWQYNPK--MRPSFLEIISSIKEEMEPGFREV 305
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFEL------FGRFDSERALAAAMSDLRDRILPPS 550
+Y SPE+++ S+I+SLG L +EL F F S++ LA + + + R +P
Sbjct: 181 YYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF-SQKELAGKIREGKFRRIPYR 239
Query: 551 FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE 587
+ E + L+ + RP+ EIL++ + E
Sbjct: 240 YSDELNE---IITRMLNLKDYHRPSVEEILENPLILE 273
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFEL------FGRFDSERALAAAMSDLRDRILPPS 550
+Y SPE+++ S+I+SLG L +EL F F S++ LA + + + R +P
Sbjct: 181 YYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF-SQKELAGKIREGKFRRIPYR 239
Query: 551 FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE 587
+ E + L+ + RP+ EIL++ + E
Sbjct: 240 YSDELNE---IITRMLNLKDYHRPSVEEILENPLILE 273
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFEL------FGRFDSERALAAAMSDLRDRILPPS 550
+Y SPE+++ S+I+SLG L +EL F F S++ LA + + + R +P
Sbjct: 181 YYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF-SQKELAGKIREGKFRRIPYR 239
Query: 551 FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE 587
+ E + L+ + RP+ EIL++ + E
Sbjct: 240 YSDELNE---IITRMLNLKDYHRPSVEEILENPLILE 273
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 484 QQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSE-RALAAAMS 540
Q ++S + KW ASPE S ++ S+++S GVL +E+F G+ E R+ + +
Sbjct: 157 QYTSSTGTKFPVKW-ASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVE 215
Query: 541 DLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
D+ R+ P S + + W+ PE RP +L+
Sbjct: 216 DISTGFRLYKPRLASTHVYQIMNHCWKERPE--DRPAFSRLLR 256
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 484 QQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSE-RALAAAMS 540
Q ++S + KW ASPE S ++ S+++S GVL +E+F G+ E R+ + +
Sbjct: 177 QYTSSTGTKFPVKW-ASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVE 235
Query: 541 DLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
D+ R+ P S + + W+ PE RP +L+
Sbjct: 236 DISTGFRLYKPRLASTHVYQIMNHCWKERPE--DRPAFSRLLR 276
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 207 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFXRRLKEGT- 264
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 265 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 299
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 484 QQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSE-RALAAAMS 540
Q ++S + KW ASPE S ++ S+++S GVL +E+F G+ E R+ + +
Sbjct: 160 QYTSSTGTKFPVKW-ASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVE 218
Query: 541 DLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
D+ R+ P S + + W+ PE RP +L+
Sbjct: 219 DISTGFRLYKPRLASTHVYQIMNHCWRERPE--DRPAFSRLLR 259
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 254 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 311
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 312 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 346
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 202 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 259
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 260 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 294
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 202 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 259
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 260 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 294
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFD 530
WYA PE LS + + S+++S GV+ +ELF D
Sbjct: 183 WYA-PESLSDNIFSRQSDVWSFGVVLYELFTYCD 215
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 263 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 320
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 321 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 355
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 484 QQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSE-RALAAAMS 540
Q ++S + KW ASPE S ++ S+++S GVL +E+F G+ E R+ + +
Sbjct: 158 QYTSSTGTKFPVKW-ASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVE 216
Query: 541 DLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
D+ R+ P S + + W+ PE RP +L+
Sbjct: 217 DISTGFRLYKPRLASTHVYQIMNHCWRERPE--DRPAFSRLLR 257
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 211 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 268
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 269 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 303
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 202 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 259
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 260 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 294
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 211 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 268
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 269 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 303
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 261 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 318
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 319 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 353
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 484 QQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSE-RALAAAMS 540
Q ++S + KW ASPE S ++ S+++S GVL +E+F G+ E R+ + +
Sbjct: 157 QYTSSTGTKFPVKW-ASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVE 215
Query: 541 DLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
D+ R+ P S + + W+ PE RP +L+
Sbjct: 216 DISTGFRLYKPRLASTHVYQIMNHCWKERPE--DRPAFSRLLR 256
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 207 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 264
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 265 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 299
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 202 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 259
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 260 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 294
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 327 KRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK 369
+R E +FRQI+ + Y H+QG+ +LKP + + +S VK
Sbjct: 114 QRDEYWRLFRQILEALSYIHSQGIIHRNLKPXNIFIDESRNVK 156
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 498 YASPEELSG-GVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRIL--PPSFLSE 554
Y + E L G G + YSLG++FFE F + + LR + PP F
Sbjct: 196 YVATEVLDGTGHYNEKIDXYSLGIIFFEXIYPFSTGXERVNILKKLRSVSIEFPPDFDDN 255
Query: 555 NPK-EAGFCLWQLHPEPLSRPTTREILQS 582
K E + +P RP R +L S
Sbjct: 256 KXKVEKKIIRLLIDHDPNKRPGARTLLNS 284
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 256 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 313
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 314 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 348
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFD 530
WYA PE LS + + S+++S GV+ +ELF D
Sbjct: 196 WYA-PESLSDNIFSRQSDVWSFGVVLYELFTYCD 228
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 838 NYIKNYLASADYDGVVKLWD--ACTGQTVSHYIEHEKRAWSVDFSQVHP---TKLASGSD 892
+Y LA+ D +K+++ T + + HE W VD++ HP T LAS S
Sbjct: 20 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA--HPKFGTILASCSY 77
Query: 893 DCSVKLWNI-NEKNSLATIKNI--ANVCCVQFSAHS-SHLLAFGSADYRTYCYDLR-NAR 947
D V +W N + S + + A+V VQ++ H LL S+D + + + N
Sbjct: 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137
Query: 948 APWCVLAGHEKAVSYVKFL--------------DSGTLVTASTDNKLKLWDLKRTSHTGP 993
++ H V+ + +S VT DN +K+W +
Sbjct: 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--- 194
Query: 994 STNACSLTFSGHTN 1007
T T GH++
Sbjct: 195 -TYVLESTLEGHSD 207
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 484 QQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSE-RALAAAMS 540
Q ++S + KW ASPE S ++ S+++S GVL +E+F G+ E R+ + +
Sbjct: 155 QYTSSTGTKFPVKW-ASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVE 213
Query: 541 DLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
D+ R+ P S + + W+ PE RP +L+
Sbjct: 214 DISTGFRLYKPRLASTHVYQIMNHCWKERPE--DRPAFSRLLR 254
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFD 530
WYA PE LS + + S+++S GV+ +ELF D
Sbjct: 184 WYA-PESLSDNIFSRQSDVWSFGVVLYELFTYCD 216
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 211 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 268
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 269 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 303
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 211 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 268
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 269 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 303
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 211 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 268
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 269 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 303
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 213 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 270
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 271 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 305
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 32.7 bits (73), Expect = 1.00, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFG---RFDSERALAAAMSDLRDRILPPS 550
Y SPE+ G S++YSLG + +E+ F + + A +R+ +PPS
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVREDPIPPS 240
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---------RFDSE--RALAAAMS 540
+L KW A PE + V T S+++S GVL +E+F + D E R L
Sbjct: 248 RLPLKWMA-PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 305
Query: 541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
R+ P + + + W H EP RPT E+++
Sbjct: 306 ----RMRAPDYTTPEMYQTMLDCW--HGEPSQRPTFSELVE 340
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSERALAAAMSDLRD--R 545
+L KW A PE + V T S+++S G+L +E+F + + ++D +
Sbjct: 227 RLPVKWMA-PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQ 285
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI 579
+ P+F +N W L EP RPT ++I
Sbjct: 286 MAQPAFAPKNIYSIMQACWAL--EPTHRPTFQQI 317
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSERALAAAMSDLRD--R 545
+L KW A PE + V T S+++S G+L +E+F + + ++D +
Sbjct: 227 RLPVKWMA-PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQ 285
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI 579
+ P+F +N W L EP RPT ++I
Sbjct: 286 MAQPAFAPKNIYSIMQACWAL--EPTHRPTFQQI 317
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 871 EKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA 914
++RA S+ + HP+ +A GS + LWN K+ IK I
Sbjct: 120 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG 163
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 481 TAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL--FGRFDSER 533
T + ST + +L KW A PE L +T S+++S G+L +E+ FGR R
Sbjct: 149 TKEASSTQDTGKLPVKWTA-PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR 202
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 871 EKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA 914
++RA S+ + HP+ +A GS + LWN K+ IK I
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG 162
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSERALAAAMSDLRD--R 545
+L KW A PE + V T S+++S G+L +E+F + + ++D +
Sbjct: 215 RLPVKWMA-PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQ 273
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI 579
+ P+F +N W L EP RPT ++I
Sbjct: 274 MAQPAFAPKNIYSIMQACWAL--EPTHRPTFQQI 305
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 871 EKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA 914
++RA S+ + HP+ +A GS + LWN K+ IK I
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG 162
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSERALAAAMSDLRD--R 545
+L KW A PE + V T S+++S G+L +E+F + + ++D +
Sbjct: 223 RLPVKWMA-PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQ 281
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI 579
+ P+F +N W L EP RPT ++I
Sbjct: 282 MAQPAFAPKNIYSIMQACWAL--EPTHRPTFQQI 313
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG----RFDSERALAAAMSDLRD--R 545
+L KW A PE + V T S+++S G+L +E+F + + ++D +
Sbjct: 229 RLPVKWMA-PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQ 287
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI 579
+ P+F +N W L EP RPT ++I
Sbjct: 288 MAQPAFAPKNIYSIMQACWAL--EPTHRPTFQQI 319
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 481 TAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL--FGRFDSER 533
T + ST + +L KW A PE L +T S+++S G+L +E+ FGR R
Sbjct: 164 TKEASSTQDTGKLPVKWTA-PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR 217
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 481 TAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL--FGRFDSER 533
T + ST + +L KW A PE L +T S+++S G+L +E+ FGR R
Sbjct: 336 TKEASSTQDTGKLPVKWTA-PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR 389
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 182 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 221
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 187 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 226
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 181 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 220
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 225
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 183 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 222
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 183 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 222
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L G+ T S+++S G+L +E+F
Sbjct: 235 RLPVKWMA-PESLFEGIYTIKSDVWSYGILLWEIF 268
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 189 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 228
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 188 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 227
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii
Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii
Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric Sec13-Nup145c-Nup84
Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric Sec13-Nup145c-Nup84
Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric Sec13-Nup145c-Nup84
Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 838 NYIKNYLASADYDGVVKLWD--ACTGQTVSHYIEHEKRAWSVDFSQVHP---TKLASGSD 892
+Y LA+ D +K+++ T + + HE W VD++ HP T LAS S
Sbjct: 18 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA--HPKFGTILASCSY 75
Query: 893 DCSVKLWNI-NEKNSLATIKNI--ANVCCVQFSAHS-SHLLAFGSADYRTYCYDLR-NAR 947
D V +W N + S + + A+V VQ++ H LL S+D + + + N
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135
Query: 948 APWCVLAGHEKAVSYVKFL--------------DSGTLVTASTDNKLKLWDLKRTSHTGP 993
++ H V+ + +S VT DN +K+W +
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--- 192
Query: 994 STNACSLTFSGHTN 1007
T T GH++
Sbjct: 193 -TYVLESTLEGHSD 205
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 201 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 240
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 225
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 184 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 223
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 214 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 253
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 190 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 229
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 225
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 201 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 240
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG----RFDSERALAAAMSDLRD--R 545
+L KW A PE + V T S+++S G+L +E+F + + ++D +
Sbjct: 221 RLPVKWMA-PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQ 279
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI 579
+ P+F +N W L EP RPT ++I
Sbjct: 280 MAQPAFAPKNIYSIMQACWAL--EPTHRPTFQQI 311
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
WYA PE L+ + +S+++S GV+ +ELF + ++ A
Sbjct: 183 WYA-PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA 222
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 208 NNIDXXKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 253
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 208 NNIDXXKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 253
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 484 QQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSERALAAAMSD 541
++++SV + +W + PE L ++ S+I++ GVL +E++ G+ ER + ++
Sbjct: 174 EETSSVGSKFPVRW-SPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAE 232
Query: 542 LRD---RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREIL 580
R+ P SE + W H + RPT + +L
Sbjct: 233 HIAQGLRLYRPHLASEKVYTIMYSCW--HEKADERPTFKILL 272
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L V T S+++S GVL +E+F
Sbjct: 266 RLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 299
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 838 NYIKNYLASADYDGVVKLWD--ACTGQTVSHYIEHEKRAWSVDFSQVHP---TKLASGSD 892
+Y +A+ D +K+++ T + + HE W VD++ HP T LAS S
Sbjct: 18 DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA--HPKFGTILASCSY 75
Query: 893 DCSVKLWNI-NEKNSLATIKNI--ANVCCVQFSAHS-SHLLAFGSADYRTYCYDLR-NAR 947
D V +W N + S + + A+V VQ++ H +L S+D + + + N
Sbjct: 76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135
Query: 948 APWCVLAGHEKAVSYVKFL--------------DSGTLVTASTDNKLKLWDLKRTSHTGP 993
++ H V+ + +S VT DN +K+W +
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--- 192
Query: 994 STNACSLTFSGHTN 1007
T T GH++
Sbjct: 193 -TYVLESTLEGHSD 205
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 914 ANVCCVQFSAHSSHLLAFGSADYRTYCYDL-RNARAPWCVLAGHE-KAVSYVKFLDSGTL 971
A V CV +S + L A GS D +++ + + P + H +V+ V +L+ T+
Sbjct: 537 AKVACVSWSPDNVRL-ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTI 595
Query: 972 VTASTDNKLKLWDL 985
V+A D+ +K W++
Sbjct: 596 VSAGQDSNIKFWNV 609
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 208 NNIDYYKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 253
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 208 NNIDYYKNTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 253
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 208 NNIDYYKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 253
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 208 NNIDYYKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 253
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 208 NNIDYYKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 253
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 334 IFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ 367
I RQI + + Y H QG+ D+KP +F L +N+
Sbjct: 173 IMRQIFSALHYLHNQGICHRDIKPENF-LFSTNK 205
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L V T S+++S GVL +E+F
Sbjct: 220 RLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 253
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 208 NNIDYYKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 253
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 195 NNIDYYKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 240
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 200 NNIDYYKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 245
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L + T S+++S GVL +E+F
Sbjct: 213 RLPVKWMA-PEALFDRIYTHQSDVWSFGVLLWEIF 246
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 480 NTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
N + + +L KW A PE L V T S+++S GVL +E+F
Sbjct: 197 NNIDYYKKTTNGRLPVKWMA-PEALFDRVYTHQSDVWSFGVLMWEIF 242
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L + T S+++S GVL +E+F
Sbjct: 213 RLPVKWMA-PEALFDRIYTHQSDVWSFGVLLWEIF 246
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L + T S+++S GVL +E+F
Sbjct: 198 RLPVKWMA-PEALFDRIYTHQSDVWSFGVLLWEIF 231
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L + T S+++S GVL +E+F
Sbjct: 206 RLPVKWMA-PEALFDRIYTHQSDVWSFGVLLWEIF 239
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 9/142 (6%)
Query: 851 GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI 910
GV WD +G ++ H +R + Q P + + DD SV + A+
Sbjct: 142 GVFISWD--SGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASD 199
Query: 911 ----KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK---AVSYV 963
K + V V+FS S + +D + C+D ++ + E + +
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 964 KFLDSGTLVTASTDNKLKLWDL 985
+LDS T D +++WD+
Sbjct: 260 SWLDSQKFATVGADATIRVWDV 281
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L + T S+++S GVL +E+F
Sbjct: 202 RLPVKWMA-PEALFDRIYTHQSDVWSFGVLLWEIF 235
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 330 ECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN 366
E +QI+ V+Y HT+ + DLKP + LL N
Sbjct: 116 EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN 152
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L + T S+++S GVL +E+F
Sbjct: 205 RLPVKWMA-PEALFDRIYTHQSDVWSFGVLLWEIF 238
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L + T S+++S GVL +E+F
Sbjct: 213 RLPVKWMA-PEALFDRIYTHQSDVWSFGVLLWEIF 246
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L + T S+++S GVL +E+F
Sbjct: 213 RLPVKWMA-PEALFDRIYTHQSDVWSFGVLLWEIF 246
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 9/142 (6%)
Query: 851 GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI 910
GV WD +G ++ H +R + Q P + + DD SV + A+
Sbjct: 142 GVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 199
Query: 911 ----KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK---AVSYV 963
K + V V+FS S + +D + C+D ++ + E + +
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 964 KFLDSGTLVTASTDNKLKLWDL 985
+LDS T D +++WD+
Sbjct: 260 SWLDSQKFATVGADATIRVWDV 281
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 330 ECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN 366
E +QI+ V+Y HT+ + DLKP + LL N
Sbjct: 116 EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN 152
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 496 KWYASPEELSGGVCTTSSNIYSLGVLFFEL 525
KW A PE ++ G T SN++S G+L +E+
Sbjct: 175 KWTA-PEAINFGCFTIKSNVWSFGILLYEI 203
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 330 ECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN 366
E +QI+ V+Y HT+ + DLKP + LL N
Sbjct: 116 EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN 152
>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
Length = 321
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 330 ECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN 366
E +QI+ V+Y HT+ + DLKP + LL N
Sbjct: 116 EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN 152
>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|D Chain D, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|E Chain E, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|F Chain F, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|G Chain G, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|H Chain H, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
Length = 321
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 330 ECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN 366
E +QI+ V+Y HT+ + DLKP + LL N
Sbjct: 116 EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN 152
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 330 ECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN 366
E +QI+ V+Y HT+ + DLKP + LL N
Sbjct: 116 EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN 152
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF 526
+L KW A PE L + T S+++S GVL +E+F
Sbjct: 254 RLPVKWMA-PEALFDRIYTHQSDVWSFGVLLWEIF 287
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSD----LRD--R 545
+L KW A PE + + +T S+++S GVL +E+F S D LR+ R
Sbjct: 262 RLPLKWMA-PESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMR 320
Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
+ P + + + W H +P RP E+++
Sbjct: 321 MRAPEYSTPEIYQIMLDCW--HRDPKERPRFAELVE 354
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 871 EKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA 914
++R S+++ HPT +A GS + LW+ + +N + I+ +
Sbjct: 72 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMG 115
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 871 EKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA 914
++R S+++ HPT +A GS + LW+ + +N + I+ +
Sbjct: 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMG 116
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 312 GVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN 366
G L E + + H + E YI R++V+ V + H GV DLKP + N
Sbjct: 90 GGELFERIKKKKHFSE-TEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDEN 143
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 330 ECLYIFRQIVALVDYHHTQGVTFLDLKPSSF 360
E ++ I V+Y H+QGV DLKPS+
Sbjct: 122 EASFVLHTIGKTVEYLHSQGVVHRDLKPSNI 152
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 160 DTSLHDFITQKPLNDEHNTILEQSANT-----ENDGLSGNMLSHGSIRTKMLSKSGFSEF 214
D+++H F+ Q PL+ E++ E+ N + DGL+ SI L++ ++
Sbjct: 91 DSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLT-------SINAGRLARGDLNDC 143
Query: 215 FVKTTLKG 222
F+ T KG
Sbjct: 144 FIPCTPKG 151
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 330 ECLYIFRQIVALVDYHHTQGVTFLDLKPSSF 360
E ++ I V+Y H+QGV DLKPS+
Sbjct: 122 EASFVLHTIGKTVEYLHSQGVVHRDLKPSNI 152
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 160 DTSLHDFITQKPLNDEHNTILEQSANT-----ENDGLSGNMLSHGSIRTKMLSKSGFSEF 214
D+++H F+ Q PL+ E++ E+ N + DGL+ SI L++ ++
Sbjct: 91 DSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLT-------SINAGRLARGDLNDC 143
Query: 215 FVKTTLKG 222
F+ T KG
Sbjct: 144 FIPCTPKG 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,816,871
Number of Sequences: 62578
Number of extensions: 1199415
Number of successful extensions: 4665
Number of sequences better than 100.0: 234
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 3951
Number of HSP's gapped (non-prelim): 512
length of query: 1056
length of database: 14,973,337
effective HSP length: 109
effective length of query: 947
effective length of database: 8,152,335
effective search space: 7720261245
effective search space used: 7720261245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)