BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001550
(1055 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 286 bits (733), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 165/338 (48%), Positives = 217/338 (64%), Gaps = 15/338 (4%)
Query: 493 KGNIRVYCRIRPFLP--GQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPE 550
KGNIRV R+RP G+ + T + + ++ + L +GK F+ +KVF P+
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSII-HLLHKGKPVS--FELDKVFSPQ 59
Query: 551 ASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDL 610
ASQ++VF + + L+ S +DG+NVCIFAYGQTG+GKTYTM G + E+ G+N RAL L
Sbjct: 60 ASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG----TAENPGINQRALQLL 115
Query: 611 FEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNG---LAVPEAS 667
F + + + Y + V EIYNE +RDLL + PQ +L I P+G L VP +
Sbjct: 116 FSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKE-PQEKLEI--RLCPDGSGQLYVPGLT 172
Query: 668 MYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHL 727
+ VQS D+ ++ G NR T LNE SSRSH++L + VRG D G G L+L
Sbjct: 173 EFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNL 232
Query: 728 IDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSS 787
+DLAGSERV +S A G RLREAQHINKSLSALGDVI AL + HVP+RNSKLT +LQ S
Sbjct: 233 VDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDS 292
Query: 788 LGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
L G +KTLM+VQ++P + SET+ +LKFAERV VEL
Sbjct: 293 LSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 233/382 (60%), Gaps = 24/382 (6%)
Query: 490 QDLKGNIRVYCRIRPFLPGQ--SKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVF 547
+D+KG IRVYCR+RP + +K++ I + E V + K K ++ ++VF
Sbjct: 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDE---FTVEHLWKDDKAKQHMY--DRVF 55
Query: 548 GPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRAL 607
A+Q++VF DT+ L++S +DGYNVCIFAYGQTGSGKT+T+ G + + G+ RA+
Sbjct: 56 DGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG----ADSNPGLTPRAM 111
Query: 608 NDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQR-RLGIWNATLPNGLAVPEA 666
++LF I + N + + MVE+Y + + DLL +R +L I + ++V
Sbjct: 112 SELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDS-KGMVSVENV 170
Query: 667 SMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLH 726
++ S+ + ++ ++ G R T +NE+SSRSH I+++ + T+L+ AI RG L
Sbjct: 171 TVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLS 230
Query: 727 LIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQS 786
+DLAGSERV +S + G++L+EAQ INKSLSALGDVI AL+ N H+PYRN KLT ++
Sbjct: 231 FVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSD 290
Query: 787 SLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAAR--SNKEGSDVRELM--- 841
SLGG AKTLM V ++P + ET ++L +A RV + ++ S+KE + +++L+
Sbjct: 291 SLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYW 350
Query: 842 -EQVGSLKDIITKKDEEIERLQ 862
EQ G D DEE+E +Q
Sbjct: 351 KEQAGRKGD-----DEELEEIQ 367
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 214/356 (60%), Gaps = 14/356 (3%)
Query: 481 ENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQT-TIEYIGENG-ELVVSNPLKQGKDNH 538
E + L+N V DL+GNIRV+CRIRP L + + T Y E+ EL + + K
Sbjct: 54 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 113
Query: 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE 598
++F F++VF P +SQ ++F PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 114 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----PE 169
Query: 599 DWGVNYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNA-T 656
GV R ++ LF+ I R YE+ +EIYNE + DLLS++ Q+ + I A
Sbjct: 170 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAKN 227
Query: 657 LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK 716
N + V + +V + LM+ MNRA STA NERSSRSH++ + + G +
Sbjct: 228 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 287
Query: 717 NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYR 776
I GS++L+DLAGSE S T R+ E ++IN+SLS L +VI AL K H+PYR
Sbjct: 288 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYR 343
Query: 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNK 832
NSKLT +L SLGG +KTLM + ++P D + E++ +L+FA V+ ++ A+ N+
Sbjct: 344 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 399
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 214/356 (60%), Gaps = 14/356 (3%)
Query: 481 ENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQT-TIEYIGENG-ELVVSNPLKQGKDNH 538
E + L+N V DL+GNIRV+CRIRP L + + T Y E+ EL + + K
Sbjct: 40 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 99
Query: 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE 598
++F F++VF P +SQ ++F PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 100 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----PE 155
Query: 599 DWGVNYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNA-T 656
GV R ++ LF+ I R YE+ +EIYNE + DLLS++ Q+ + I A
Sbjct: 156 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAKN 213
Query: 657 LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK 716
N + V + +V + LM+ MNRA STA NERSSRSH++ + + G +
Sbjct: 214 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 273
Query: 717 NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYR 776
I GS++L+DLAGSE S T R+ E ++IN+SLS L +VI AL K H+PYR
Sbjct: 274 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYR 329
Query: 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNK 832
NSKLT +L SLGG +KTLM + ++P D + E++ +L+FA V+ ++ A+ N+
Sbjct: 330 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 385
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 253 bits (647), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 207/347 (59%), Gaps = 19/347 (5%)
Query: 483 RRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQ-----TTIEYIGENGELVVSNPLKQGKDN 537
+R YN ++D+KG IRVYCRIRP +S ++ TT++ E V +P K K
Sbjct: 2 KRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVD------EFTVEHPWKDDKRK 55
Query: 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISST 597
++ ++VF ASQ+++F DT+ L++S +DGYNVCIFAYGQTGSGKT+T+ G
Sbjct: 56 QHIY--DRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG----HE 109
Query: 598 EDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATL 657
+ G+ RA +LF I + + + MVE+Y + + DLL RRL +
Sbjct: 110 SNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSA-RRLKLEIKKD 168
Query: 658 PNGLAVPE-ASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK 716
G+ E + + + ++ ++ G R V T +NE SSRSH IL++ + DL+
Sbjct: 169 SKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQ 228
Query: 717 NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYR 776
+ RG L +DLAGSERV +S + G++L+EAQ INKSLSALGDVI AL+ N H+PYR
Sbjct: 229 TQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYR 288
Query: 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
N KLT ++ SLGG AKTLM V ++P + ET ++L +A RV +
Sbjct: 289 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 252 bits (643), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 213/356 (59%), Gaps = 14/356 (3%)
Query: 481 ENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQT-TIEYIGENG-ELVVSNPLKQGKDNH 538
E + L+N V DL+GNIRV+CRIRP L + + T Y E+ EL + + K
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE 598
++F F++VF P +SQ ++F PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----PE 158
Query: 599 DWGVNYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNA-T 656
GV R ++ LF+ I R YE+ +EIYNE + DLLS++ Q+ + I A
Sbjct: 159 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAKN 216
Query: 657 LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK 716
N + V + +V + LM+ MNRA STA NERSSRSH++ + + G +
Sbjct: 217 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 276
Query: 717 NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYR 776
I GS++L+DLAGSE S T R+ E ++I +SLS L +VI AL K H+PYR
Sbjct: 277 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYR 332
Query: 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNK 832
NSKLT +L SLGG +KTLM + ++P D + E++ +L+FA V+ ++ A+ N+
Sbjct: 333 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 388
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 213/356 (59%), Gaps = 14/356 (3%)
Query: 481 ENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQT-TIEYIGENG-ELVVSNPLKQGKDNH 538
E + L+N V DL+ NIRV+CRIRP L + + T Y E+ EL + + K
Sbjct: 46 ERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 105
Query: 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE 598
++F F++VF P +SQ ++F PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 106 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----PE 161
Query: 599 DWGVNYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNA-T 656
GV R ++ LF+ I R YE+ +EIYNE + DLLS++ Q+ + I A
Sbjct: 162 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAKN 219
Query: 657 LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK 716
N + V + +V + LM+ MNRA STA NERSSRSH++ + + G +
Sbjct: 220 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 279
Query: 717 NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYR 776
I GS++L+DLAGSE S T R+ E ++IN+SLS L +VI AL K H+PYR
Sbjct: 280 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYR 335
Query: 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNK 832
NSKLT +L SLGG +KTLM + ++P D + E++ +L+FA V+ ++ A+ N+
Sbjct: 336 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 214/360 (59%), Gaps = 25/360 (6%)
Query: 483 RRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQTTIEYIGE--NGELVVSNPLKQGKDNHRL 540
R L+NE+Q+L+GNIRVYCRIRP L T++ + E + V S + + ++ ++
Sbjct: 3 RTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV 62
Query: 541 --FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP---CIS 595
FKF+K+F + + +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P I
Sbjct: 63 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIP 122
Query: 596 STEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR---LGI 652
ST N+ I++ + Y+V + +EIYNE + DLL SD + +G+
Sbjct: 123 STISHIFNW--------INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGL 174
Query: 653 WNATLPNGLAVPEASMYSVQSTADVLELMNIGLMN----RAVCSTALNERSSRSHSILTI 708
+ + + E++ I L R+ STA NE SSRSHSI I
Sbjct: 175 KHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFII 234
Query: 709 HVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH 768
H+ G++ K GA G+L+L+DLAGSER++ S+ GDRLRE Q+INKSLS LGDVI AL
Sbjct: 235 HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ 294
Query: 769 KNP---HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
+ H+P+RNSKLT +LQ SL G +KTLM V ++P +ET+++L+FA +V+ L
Sbjct: 295 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 249 bits (635), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 149/349 (42%), Positives = 210/349 (60%), Gaps = 14/349 (4%)
Query: 481 ENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQT-TIEYIGENG-ELVVSNPLKQGKDNH 538
E + L+N V DL+GNIRV+CRIRP L + + T Y E+ EL + + K
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE 598
++F F++VF P +SQ ++F PLI+S LDGYN+CIFAYGQ+GSGKTYTM G E
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDG----VPE 158
Query: 599 DWGVNYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNA-T 656
GV R ++ LF+ I R YE+ +EIYNE + DLLS++ Q+ + I A
Sbjct: 159 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--QKDMEIRMAKN 216
Query: 657 LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK 716
N + V + +V + LM+ MNRA STA NERSSRSH++ + + G +
Sbjct: 217 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 276
Query: 717 NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYR 776
I GS++L+DLAGSE S T R+ E ++IN+SLS L +VI AL K H+PYR
Sbjct: 277 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYR 332
Query: 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
NSKLT +L SLGG +KTLM + ++P D + E++ +L+FA V+ ++
Sbjct: 333 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 381
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 246 bits (629), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 213/360 (59%), Gaps = 25/360 (6%)
Query: 483 RRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQTTIEYIGE--NGELVVSNPLKQGKDNHRL 540
R L+NE+Q+L+GNIRVY RIRP L T++ + E + V S + + ++ ++
Sbjct: 48 RTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV 107
Query: 541 --FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP---CIS 595
FKF+K+F + + +VF + L++S LDGYNV IFAYGQTGSGKT+TM P I
Sbjct: 108 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIP 167
Query: 596 STEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR---LGI 652
ST N+ I++ + Y+V + +EIYNE + DLL SD + +G+
Sbjct: 168 STISHIFNW--------INKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGL 219
Query: 653 WNATLPNGLAVPEASMYSVQSTADVLELMNIGLMN----RAVCSTALNERSSRSHSILTI 708
+ + + E++ I L R+ STA NE SSRSHSI I
Sbjct: 220 KHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFII 279
Query: 709 HVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH 768
H+ G++ K GA G+L+L+DLAGSER++ S+ GDRLRE Q+INKSLSALGDVI AL
Sbjct: 280 HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQ 339
Query: 769 KNP---HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
+ H+P+RNSKLT +LQ SL G +KTLM V ++P +ET+++L+FA +V+ L
Sbjct: 340 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 246 bits (628), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 153/362 (42%), Positives = 213/362 (58%), Gaps = 30/362 (8%)
Query: 483 RRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQTTIEYI------GENGELVVSNPLKQGKD 536
R L+NE+Q+L+GNIRVYCRIRP LP + IE+I +NG+ ++ + +G
Sbjct: 17 RALHNELQELRGNIRVYCRIRPPLPHEDD---NIEHIKVQPFDDDNGDQGMT--INRGNS 71
Query: 537 NHRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISS 596
FKF+K+F + + +E+F + LI+S LDGYNVCIFAYGQTGSGKTYTM P
Sbjct: 72 QVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNP---- 127
Query: 597 TEDWGVNYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNA 655
G+ +N +F I + Y+V + +EIYNE + DLL S P + NA
Sbjct: 128 --GDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNA 185
Query: 656 TLPNGLAVPE--ASMYSVQSTADVLE-------LMNIGLMNRAVCSTALNERSSRSHSIL 706
+ + + + Y T VL+ ++ R+ STA NE SSRSHSI
Sbjct: 186 DSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIF 245
Query: 707 TIHVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFAL 766
IH+ G + G +G L+L+DLAGSER++ S G+RLRE Q INKSLS LGDVI AL
Sbjct: 246 IIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHAL 305
Query: 767 AH---KNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
+ H+P+RNSKLT +LQ SL G +KTLM V ++P +ETI++L+FA +V+
Sbjct: 306 NSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNT 365
Query: 824 EL 825
++
Sbjct: 366 KM 367
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 243 bits (619), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 152/359 (42%), Positives = 198/359 (55%), Gaps = 33/359 (9%)
Query: 491 DLKGNIRVYCRIRPFLPGQSKKQTTIEYI--GENGELVVSNPLKQGKDNHRL-------- 540
LKGNIRV+CR+RP LPG+ + G G L + + R
Sbjct: 19 SLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPA 78
Query: 541 ------FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCI 594
F F++VF P + Q+EVF + L++S LDGY VCIFAYGQTGSGKT+TM G
Sbjct: 79 PPPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPG 138
Query: 595 SSTEDWGVNYRALNDLFEIS-ESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQ------ 647
+ G+ RAL LF ++ E Y VEIYNE VRDLL++ +
Sbjct: 139 GDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGEC 198
Query: 648 --RRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI 705
RR G + L V A V +V L+++ NRAV TA NERSSRSHS+
Sbjct: 199 EIRRAGPGSEEL----TVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSV 254
Query: 706 LTIHVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATG----DRLREAQHINKSLSALGD 761
+ + G G L L+DLAGSER+D A G +RLRE Q IN SLS LG
Sbjct: 255 FQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGL 314
Query: 762 VIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERV 820
VI AL++K HVPYRNSKLT +LQ+SLGG AK LM V ++P ++ SE++++L+FA +V
Sbjct: 315 VIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/349 (41%), Positives = 204/349 (58%), Gaps = 25/349 (7%)
Query: 494 GNIRVYCRIRPFLPGQSKKQTTIEYIGE--NGELVVSNPLKQGKDNHRL--FKFNKVFGP 549
GNIRVYCRIRP L T++ + E + V S + + ++ ++ FKF+K+F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 550 EASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP---CISSTEDWGVNYRA 606
+ + +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P I ST N+
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNW-- 119
Query: 607 LNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR---LGIWNATLPNGLAV 663
I++ + Y+V + +EIYNE + DLL SD + +G+ + +
Sbjct: 120 ------INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 173
Query: 664 PEASMYSVQSTADVLELMNIGLMN----RAVCSTALNERSSRSHSILTIHVRGTDLKNGA 719
+ E++ I L R+ STA NE SSRSHSI IH+ G++ K GA
Sbjct: 174 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 233
Query: 720 ILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP---HVPYR 776
G+L+L+DLAGSER++ S+ GDRLRE Q+INKSLS LGDVI AL + H+P+R
Sbjct: 234 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 293
Query: 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
NSKLT +LQ SL G +KTLM V ++P +ET+++L+FA +V+ L
Sbjct: 294 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 236 bits (603), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 205/351 (58%), Gaps = 25/351 (7%)
Query: 492 LKGNIRVYCRIRPFLPGQSKKQTTIEYIGE--NGELVVSNPLKQGKDNHRL--FKFNKVF 547
++GNIRVYCRIRP L T++ + E + V S + + ++ ++ FKF+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 548 GPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP---CISSTEDWGVNY 604
+ + +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P I ST N+
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNW 120
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR---LGIWNATLPNGL 661
I++ + Y+V + +EIYNE + DLL SD + +G+ + +
Sbjct: 121 --------INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 662 AVPEASMYSVQSTADVLELMNIGLMN----RAVCSTALNERSSRSHSILTIHVRGTDLKN 717
+ E++ I L R+ STA NE SSRSHSI IH+ G++ K
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 232
Query: 718 GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP---HVP 774
GA G+L+L+DLAGSER++ S+ GDRLRE Q+I KSLS LGDVI AL + H+P
Sbjct: 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 775 YRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
+RNSKLT +LQ SL G +KTLM V ++P +ET+++L+FA +V+ L
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 236 bits (603), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 205/351 (58%), Gaps = 25/351 (7%)
Query: 492 LKGNIRVYCRIRPFLPGQSKKQTTIEYIGE--NGELVVSNPLKQGKDNHRL--FKFNKVF 547
++GNIRVYCRIRP L T++ + E + V S + + ++ ++ FKF+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 548 GPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP---CISSTEDWGVNY 604
+ + +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P I ST N+
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNW 120
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR---LGIWNATLPNGL 661
I++ + Y+V + +EIYNE + DLL SD + +G+ + +
Sbjct: 121 --------INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 662 AVPEASMYSVQSTADVLELMNIGLMN----RAVCSTALNERSSRSHSILTIHVRGTDLKN 717
+ E++ I L R+ STA NE SSRSHSI IH+ G++ K
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 232
Query: 718 GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP---HVP 774
GA G+L+L+DLAGS R++ S+ GDRLRE Q+INKSLS LGDVI AL + H+P
Sbjct: 233 GAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 775 YRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
+RNSKLT +LQ SL G +KTLM V ++P +ET+++L+FA +V+ L
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 236 bits (602), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 205/351 (58%), Gaps = 25/351 (7%)
Query: 492 LKGNIRVYCRIRPFLPGQSKKQTTIEYIGE--NGELVVSNPLKQGKDNHRL--FKFNKVF 547
++GNIRVYCRIRP L T++ + E + V S + + ++ ++ FKF+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 548 GPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP---CISSTEDWGVNY 604
+ + +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P I ST N+
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNW 120
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR---LGIWNATLPNGL 661
I++ + Y+V + +EIYNE + DLL SD + +G+ + +
Sbjct: 121 --------INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 662 AVPEASMYSVQSTADVLELMNIGLMN----RAVCSTALNERSSRSHSILTIHVRGTDLKN 717
+ E++ I L R+ STA NE SS SHSI IH+ G++ K
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT 232
Query: 718 GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP---HVP 774
GA G+L+L+DLAGSER++ S+ GDRLRE Q+INKSLS LGDVI AL + H+P
Sbjct: 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 775 YRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
+RNSKLT +LQ SL G +KTLM V ++P +ET+++L+FA +V+ L
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 236 bits (601), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 213/352 (60%), Gaps = 24/352 (6%)
Query: 492 LKGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRL----FKFNKVF 547
L+GNIRVYCR+RP L + + + I I + E + L ++ R+ F+F+ +F
Sbjct: 3 LRGNIRVYCRVRPPLLNEPQDMSHI-LIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIF 61
Query: 548 GPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRAL 607
P + +E+F + R L++S LDGYNVCIFAYGQTGSGKTYTM +++ + G+ L
Sbjct: 62 EPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM----LNAGD--GMIPMTL 115
Query: 608 NDLFEISESRK-NSILYEVGVQMVEIYNEQVRDLL----SSDG-----PQRRLGIWNATL 657
+ +F+ + + K YE+ + +EIYNE + DLL S D ++ I +
Sbjct: 116 SHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHE 175
Query: 658 PNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN 717
G + + + ST+ V ++ R+ +T NERSSRSHS+ +H+ G +L
Sbjct: 176 KQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT 235
Query: 718 GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP---HVP 774
G +G L+L+DLAGSER++ S TG+RLRE Q+INKSLS LGDVI+AL + ++P
Sbjct: 236 GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIP 295
Query: 775 YRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELG 826
+RNSKLT +LQ SL G +KTLM V + PD + SET+++L+FA +V+ ++
Sbjct: 296 FRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 199/349 (57%), Gaps = 22/349 (6%)
Query: 492 LKGNIRVYCRIRPFLPGQSKK-----QTTIEYIGENG-------ELVVSNPLKQGKDNHR 539
LKGNIRV+CRIR S + I+Y ELV++ + N R
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLR 431
Query: 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTED 599
F F+K+F E S + VF + LI+ LDG NVC+FAYGQTGSGKT+TMS P
Sbjct: 432 -FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN----- 485
Query: 600 WGVNYRALNDLF-EISESRKNSILYEVGVQMVEIYNEQVRDLLSSD-GPQRRLGIWNATL 657
G+ +L +F +I E ++ Y V + +EIYNE + DLL+ P + I + +
Sbjct: 486 -GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDI 544
Query: 658 PNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN 717
V S ++S + ++N R+ +T N+ SSRSHSI I ++G +
Sbjct: 545 AGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT 604
Query: 718 GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN-PHVPYR 776
G+L+LIDLAGSER++ S A GDRL+E Q INKSLS LGDVI +L K+ HVPYR
Sbjct: 605 KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYR 664
Query: 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
NSKLT +L+ SLGG +KTLM V ++P +ETI++L+FA +V+ +
Sbjct: 665 NSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 218 bits (555), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 205/340 (60%), Gaps = 17/340 (5%)
Query: 495 NIRVYCRIRPFLPGQSKKQTTIEYIGEN---GELVVSNPLKQGKDNHRLFKFNKVFGPEA 551
++RV R RP + G+ K + + + + G++ V NP + + F F+ V+ A
Sbjct: 22 SVRVVVRCRP-MNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNA 80
Query: 552 SQEEVFLDT-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDL 610
Q E++ +T RPL+ SVL G+N IFAYGQTG+GKTYTM G E GV + + +
Sbjct: 81 KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG-IRGDPEKRGVIPNSFDHI 139
Query: 611 FEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPN-GLAVPEASMY 669
F SR + Y V +EIY E++RDLLS D +R + P+ G+ V + S +
Sbjct: 140 F-THISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR---LELKERPDTGVYVKDLSSF 195
Query: 670 SVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVR----GTDLKNGAILRGSL 725
+S ++ +MN+G NR+V +T +NE SSRSH+I I + G D +N I G L
Sbjct: 196 VTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGEN-HIRVGKL 254
Query: 726 HLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH-KNPHVPYRNSKLTQVL 784
+L+DLAGSER ++ A G+RL+EA IN SLSALG+VI AL K+ H+PYR+SKLT++L
Sbjct: 255 NLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLL 314
Query: 785 QSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVE 824
Q SLGG AKT+M+ + P + ET++TL++A R ++
Sbjct: 315 QDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK 354
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 197/331 (59%), Gaps = 11/331 (3%)
Query: 496 IRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEE 555
I+V CR RP S+++ +++ + V N + +++ F+KVF P ASQE+
Sbjct: 13 IKVVCRFRPL--NDSEEKAGSKFVVKFPNNVEENCISIAG---KVYLFDKVFKPNASQEK 67
Query: 556 VFLDT-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEIS 614
V+ + + ++ VL GYN IFAYGQT SGKT+TM G I + G+ R +ND+F
Sbjct: 68 VYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEG-VIGDSVKQGIIPRIVNDIFNHI 126
Query: 615 ESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQST 674
+ + ++ + + V EIY +++RDLL + +P V A+ V S
Sbjct: 127 YAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVP---YVKGATERFVSSP 183
Query: 675 ADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDLAGSE 734
DV E++ G NR + T +NE SSRSHS+ I+V+ +L+N L G L+L+DLAGSE
Sbjct: 184 EDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSE 243
Query: 735 RVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN-PHVPYRNSKLTQVLQSSLGGQAK 793
+V ++ A G L EA++INKSLSALG+VI ALA N H+PYR+SKLT++LQ SLGG A+
Sbjct: 244 KVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNAR 303
Query: 794 TLMMVQLNPDVDSYSETISTLKFAERVSGVE 824
T +++ +P + SET STL F R V+
Sbjct: 304 TTIVICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 209 bits (533), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 193/340 (56%), Gaps = 25/340 (7%)
Query: 495 NIRVYCRIRP--FLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
+I+V R RP + +S Q + + G + V S K+ F F++VF
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDS------KEAQGSFTFDRVFDMSCK 60
Query: 553 QEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLF 611
Q ++F +P + +L+GYN +FAYGQTG+GK+YTM G I + GV R + +F
Sbjct: 61 QSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIF 120
Query: 612 EISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLP------NGLAVPE 665
S +I Y V V +EIY E++RDLL+ PQ N LP G+ V
Sbjct: 121 TSILSSAANIEYTVRVSYMEIYMERIRDLLA---PQ------NDNLPVHEEKNRGVYVKG 171
Query: 666 ASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSL 725
V S +V E+M G RAV +T +N+ SSRSHSI I + +++ G+ G L
Sbjct: 172 LLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQL 231
Query: 726 HLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH-KNPHVPYRNSKLTQVL 784
L+DLAGSE+V ++ A+G L EA+ INKSLSALG VI AL K+ HVPYR+SKLT++L
Sbjct: 232 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRIL 291
Query: 785 QSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVE 824
Q SLGG ++T +++ +P + +ET+STL+F R ++
Sbjct: 292 QESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK 331
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 199/347 (57%), Gaps = 32/347 (9%)
Query: 495 NIRVYCRIRPFLPGQSKKQT-TIEYIGENGELVVSNP------LKQGKDNHRLFKFNKVF 547
NI+V R RP ++++ I + E V+ +P Q K R F F+ V+
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 548 GPEASQEEVFLDT-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRA 606
+ +F + +PLI +VL+G+N IFAYGQTG+GKT+TM G + E+ G +
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGG----NKEEPGAIPNS 120
Query: 607 LNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLP------N 659
LF+ I+ S N +G +E+YNE++RDL+ + N LP
Sbjct: 121 FKHLFDAINSSSSNQNFLVIG-SYLELYNEEIRDLIKN----------NTKLPLKEDKTR 169
Query: 660 GLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTD-LKNG 718
G+ V SM+ V + A++ LM+ G NR V +T +N+ SSRSHSI + + ++ ++N
Sbjct: 170 GIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENK 229
Query: 719 AILR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRN 777
++R G L+L+DLAGSER ++ ATG+ L E IN SLSALG VI L H+PYR+
Sbjct: 230 EVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRD 289
Query: 778 SKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVE 824
SKLT++LQ SLGG +KTLM ++P +Y ET+STL++A+R ++
Sbjct: 290 SKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 193/333 (57%), Gaps = 17/333 (5%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V CR RP + + + ++ GE+ ++ S P + F++VF S
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP----------YAFDRVFQSSTS 57
Query: 553 QEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLF 611
QE+V+ D + +++ VL+GYN IFAYGQT SGKT+TM G + E G+ R + D+F
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK-LHDPEGMGIIPRIVQDIF 116
Query: 612 EISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSV 671
S ++ + + V EIY +++RDLL + +P V + V
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVP---YVKGCTERFV 173
Query: 672 QSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDLA 731
S +V++ ++ G NR V T +NE SSRSHSI I+V+ + + L G L+L+DLA
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLA 233
Query: 732 GSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQ 791
GSE+V ++ A G L EA++INKSLSALG+VI ALA + +VPYR+SK+T++LQ SLGG
Sbjct: 234 GSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGN 293
Query: 792 AKTLMMVQLNPDVDSYSETISTLKFAERVSGVE 824
+T +++ +P + SET STL F +R ++
Sbjct: 294 CRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 192/332 (57%), Gaps = 17/332 (5%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V CR RP + + + ++ GE+ ++ S P + F++VF S
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP----------YAFDRVFQSSTS 57
Query: 553 QEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLF 611
QE+V+ D + +++ VL+GYN IFAYGQT SGKT+TM G + E G+ R + D+F
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK-LHDPEGMGIIPRIVQDIF 116
Query: 612 EISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSV 671
S ++ + + V EIY +++RDLL + +P V + V
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVP---YVKGCTERFV 173
Query: 672 QSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDLA 731
S +V++ ++ G NR V T +NE SSRSHSI I+V+ + + L G L+L+DLA
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLA 233
Query: 732 GSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQ 791
GSE+V ++ A G L EA++INKSLSALG+VI ALA + +VPYR+SK+T++LQ SLGG
Sbjct: 234 GSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGN 293
Query: 792 AKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
+T +++ +P + SET STL F +R +
Sbjct: 294 CRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 192/333 (57%), Gaps = 17/333 (5%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V CR RP + + + ++ GE+ ++ S P + F++VF S
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKP----------YAFDRVFQSSTS 57
Query: 553 QEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLF 611
QE+V+ D + +++ VL+GYN IFAYGQT SGK +TM G + E G+ R + D+F
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGK-LHDPEGMGIIPRIVQDIF 116
Query: 612 EISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSV 671
S ++ + + V EIY +++RDLL + +P V + V
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVP---YVKGCTERFV 173
Query: 672 QSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDLA 731
S +V++ ++ G NR V T +NE SSRSHSI I+V+ + + L G L+L+DLA
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLA 233
Query: 732 GSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQ 791
GSE+V ++ A G L EA++INKSLSALG+VI ALA + +VPYR+SK+T++LQ SLGG
Sbjct: 234 GSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGN 293
Query: 792 AKTLMMVQLNPDVDSYSETISTLKFAERVSGVE 824
+T +++ +P + SET STL F +R ++
Sbjct: 294 CRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/344 (38%), Positives = 200/344 (58%), Gaps = 19/344 (5%)
Query: 495 NIRVYCRIRPFLPGQS--KKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+VY R+RP + + ++ +G E+V + L + F F++ FGPE+
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPR-EVVTRHTLDSKLT--KKFTFDRSFGPESK 80
Query: 553 QEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG----PCISSTED---WGVNY 604
Q +V+ + PLI VL+GYN +FAYGQTG+GKT+TM G SS ED G+
Sbjct: 81 QCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIP 140
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVP 664
RAL+ LF+ E R + Y + + +E+YNE++ DLLS+D + ++T + +
Sbjct: 141 RALSHLFD--ELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQ 198
Query: 665 EASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTI--HVRGTDLKNGAILR 722
V S DV +L+ G R +T +N +SSRSH++ +I H+R ++ +L+
Sbjct: 199 GLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLK 258
Query: 723 -GSLHLIDLAGSERVDRS-EATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKL 780
G L+L+DLAGSE V ++ G R+RE +IN+SL LG VI AL + PHVPYR SKL
Sbjct: 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKL 318
Query: 781 TQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVE 824
T++LQ SLGG+ KT ++ ++P ET+STL++A R ++
Sbjct: 319 TRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 194/332 (58%), Gaps = 35/332 (10%)
Query: 523 GELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLDT-RPLIRSVLDGYNVCIFAYGQT 581
G++ + NP + + F F+ V+ + Q +++ +T RPLI SVL G+N +FAYGQT
Sbjct: 52 GQVTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQT 111
Query: 582 GSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL 641
G+GKTYTM G + E GV A +F SR + Y V +EIY E++RDLL
Sbjct: 112 GTGKTYTMQGTWVEP-ELRGVIPNAFEHIF-THISRSQNQQYLVRASYLEIYQEEIRDLL 169
Query: 642 SSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSR 701
S + P +RL + G+ + + S + ++ ++ +MN+G RAV ST +NE SSR
Sbjct: 170 SKE-PGKRLEL-KENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSR 227
Query: 702 SHSILTIHV----RGTDLKNGAILRGSLHLIDLAGSERVDRS---EATG----------- 743
SH+I I V RG+D ++ I G L+L+DLAGSER +++ A G
Sbjct: 228 SHAIFIITVECSERGSDGQD-HIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGG 286
Query: 744 ----------DRLREAQHINKSLSALGDVIFALA-HKNPHVPYRNSKLTQVLQSSLGGQA 792
+R +EA IN SLSALG+VI ALA +++ H+PYR+SKLT++LQ SLGG A
Sbjct: 287 GGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNA 346
Query: 793 KTLMMVQLNPDVDSYSETISTLKFAERVSGVE 824
KT+M+ L P SY E++STL+FA R ++
Sbjct: 347 KTIMVATLGPASHSYDESLSTLRFANRAKNIK 378
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 177/299 (59%), Gaps = 17/299 (5%)
Query: 532 KQGKDNHRLFKFNKVFGPEASQEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590
KQ KD F F+ VF ++Q EVF T+P++RS L+GYN + AYG TG+GKT+TM
Sbjct: 67 KQNKD--LKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124
Query: 591 GPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650
G S ++ GV Y + L++ + K + V +E+YNEQ+RDLL + GP L
Sbjct: 125 G----SADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP---L 177
Query: 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHV 710
+ T G+ V +++ +S+ ++L L++ G NR T +N SSRSH++ I++
Sbjct: 178 AVREDT-QKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYL 236
Query: 711 RGTDLK---NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALA 767
R D N + + LIDLAGSER S A G R E +IN+SL ALG+VI ALA
Sbjct: 237 RQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALA 296
Query: 768 ---HKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
KN H+PYRNSKLT++L+ SLGG +T+M+ ++P Y +T +TLK+A R +
Sbjct: 297 DSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/354 (38%), Positives = 204/354 (57%), Gaps = 38/354 (10%)
Query: 496 IRVYCRIRPFLPGQSKKQTTIE---YIGENGELVVSNP----LKQG--KDNHRLFKFNKV 546
++V RIRP ++++T + + + V+ NP L +G + ++F ++
Sbjct: 3 VKVAVRIRPM----NRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHC 58
Query: 547 FGP--------EASQEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISST 597
F A Q+ VF ++++ DGYN CIFAYGQTGSGK+YTM G +
Sbjct: 59 FWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG----TA 114
Query: 598 EDWGVNYRALNDLFEISESRKNS-ILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNAT 656
+ G+ R + LFE ++ +N ++V V +EIYNE+VRDLL G ++ L + +
Sbjct: 115 DQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHS 174
Query: 657 LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT--D 714
+ G V S +V S D+ LM+ G +R V +T +NE SSRSH++ I + T D
Sbjct: 175 VL-GPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYD 233
Query: 715 LKNGAILR--GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALA----- 767
+K+G G L L+DLAGSER ++ A GDRL+E +INKSL+ LG VI ALA
Sbjct: 234 VKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAG 293
Query: 768 -HKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERV 820
+KN VPYR+S LT +L+ SLGG +KT M+ ++P D+Y ET+STL++A+R
Sbjct: 294 KNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRA 347
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 191/344 (55%), Gaps = 17/344 (4%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V R+RPF + K + +E E+ V K + + + F+ VFG
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 553 QEEVFLDT-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP-------CISSTEDWGVNY 604
Q +V+ P++ V+ GYN IFAYGQTG+GKT+TM G C G+
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL--SSDGPQRRLGIWNATLPNGLA 662
R L+ +FE + N + V V ++EIYNE++ DLL SSD +R + G+
Sbjct: 138 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI--LTIHVRGTDLKNGAI 720
+ +V + +V +++ G R +T +N SSRSHS+ +TIH++ T + +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 721 LR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSK 779
++ G L+L+DLAGSE + RS A R REA +IN+SL LG VI AL + PHVPYR SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 780 LTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
LT++LQ SLGG+ +T ++ ++P + ET+STL++A R +
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 192/344 (55%), Gaps = 17/344 (4%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V R RPF + K + +E E+ V K + + + F+ VFG
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 553 QEEVFLDTR-PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE-DW------GVNY 604
Q +V+ P++ V+ GYN IFAYGQTG+GKT+TM G + E W G+
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL--SSDGPQRRLGIWNATLPNGLA 662
R L+ +FE + N + V V ++EIYNE++ DLL SSD +R + G+
Sbjct: 129 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 186
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI--LTIHVRGTDLKNGAI 720
+ +V + +V +++ G R +T +N SSRSHS+ +TIH++ T + +
Sbjct: 187 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 246
Query: 721 LR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSK 779
++ G L+L+DLAGSE + RS A R REA +IN+SL LG VI AL + PHVPYR SK
Sbjct: 247 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 306
Query: 780 LTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
LT++LQ SLGG+ +T ++ ++P + ET+STL++A R +
Sbjct: 307 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 192/344 (55%), Gaps = 17/344 (4%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V R RPF + K + +E E+ V K + + + F+ VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 553 QEEVFLDTR-PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE-DW------GVNY 604
Q +V+ P++ V+ GYN IFAYGQTG+GKT+TM G + E W G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL--SSDGPQRRLGIWNATLPNGLA 662
R L+ +FE + N + V V ++EIYNE++ DLL SSD +R + G+
Sbjct: 138 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI--LTIHVRGTDLKNGAI 720
+ +V + +V +++ G R +T +N SSRSHS+ +TIH++ T + +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 721 LR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSK 779
++ G L+L+DLAGSE + RS A R REA +IN+SL LG VI AL + PHVPYR SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 780 LTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
LT++LQ SLGG+ +T ++ ++P + ET+STL++A R +
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 192/344 (55%), Gaps = 17/344 (4%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V R RPF + K + +E E+ V K + + + F+ VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 553 QEEVFLDTR-PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE-DW------GVNY 604
Q +V+ P++ V+ GYN IFAYGQTG+GKT+TM G + E W G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL--SSDGPQRRLGIWNATLPNGLA 662
R L+ +FE + N + V V ++EIYNE++ DLL SSD +R + G+
Sbjct: 138 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI--LTIHVRGTDLKNGAI 720
+ +V + +V +++ G R +T +N SSRSHS+ +TIH++ T + +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 721 LR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSK 779
++ G L+L+DLAGSE + RS A R REA +IN+SL LG VI AL + PHVPYR SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 780 LTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
LT++LQ SLGG+ +T ++ ++P + ET+STL++A R +
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 192/344 (55%), Gaps = 17/344 (4%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V R RPF + K + +E E+ V K + + + F+ VFG
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 553 QEEVFLDTR-PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE-DW------GVNY 604
Q +V+ P++ V+ GYN IFAYGQTG+GKT+TM G + E W G+
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL--SSDGPQRRLGIWNATLPNGLA 662
R L+ +FE + N + V V ++EIYNE++ DLL SSD +R + G+
Sbjct: 140 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 197
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI--LTIHVRGTDLKNGAI 720
+ +V + +V +++ G R +T +N SSRSHS+ +TIH++ T + +
Sbjct: 198 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 257
Query: 721 LR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSK 779
++ G L+L+DLAGSE + RS A R REA +IN+SL LG VI AL + PHVPYR SK
Sbjct: 258 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 317
Query: 780 LTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
LT++LQ SLGG+ +T ++ ++P + ET+STL++A R +
Sbjct: 318 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 192/344 (55%), Gaps = 17/344 (4%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V R RPF + K + +E E+ V K + + + F+ VFG
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 553 QEEVFLDTR-PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE-DW------GVNY 604
Q +V+ P++ V+ GYN IFAYGQTG+GKT+TM G + E W G+
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL--SSDGPQRRLGIWNATLPNGLA 662
R L+ +FE + N + V V ++EIYNE++ DLL SSD +R + G+
Sbjct: 137 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 194
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI--LTIHVRGTDLKNGAI 720
+ +V + +V +++ G R +T +N SSRSHS+ +TIH++ T + +
Sbjct: 195 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 254
Query: 721 LR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSK 779
++ G L+L+DLAGSE + RS A R REA +IN+SL LG VI AL + PHVPYR SK
Sbjct: 255 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 314
Query: 780 LTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
LT++LQ SLGG+ +T ++ ++P + ET+STL++A R +
Sbjct: 315 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 192/344 (55%), Gaps = 17/344 (4%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V R RPF + K + +E E+ V K + + + F+ VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 553 QEEVFLDTR-PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE-DW------GVNY 604
Q +V+ P++ V+ GYN IFAYGQTG+GKT+TM G + E W G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL--SSDGPQRRLGIWNATLPNGLA 662
R L+ +FE + N + V V ++EIYNE++ DLL SSD +R + G+
Sbjct: 138 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI--LTIHVRGTDLKNGAI 720
+ +V + +V +++ G R +T +N SSRSHS+ +TIH++ T + +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 721 LR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSK 779
++ G L+L+DLAGSE + RS A R REA +IN+SL LG VI AL + PHVPYR SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 780 LTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
LT++LQ SLGG+ +T ++ ++P + ET+STL++A R +
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 192/344 (55%), Gaps = 17/344 (4%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V R RPF + K + +E E+ V K + + + F+ VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 553 QEEVFLDTR-PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE-DW------GVNY 604
Q +V+ P++ V+ GYN IFAYGQTG+GKT+TM G + E W G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL--SSDGPQRRLGIWNATLPNGLA 662
R L+ +FE + N + V V ++EIYNE++ DLL SSD +R + G+
Sbjct: 138 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI--LTIHVRGTDLKNGAI 720
+ +V + +V +++ G R +T +N SSRSHS+ +TIH++ T + +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 721 LR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSK 779
++ G L+L+DLAGSE + RS A R REA +IN+SL LG VI AL + PHVPYR SK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 780 LTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
LT++LQ SLGG+ +T ++ ++P + ET+STL++A R +
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 192/344 (55%), Gaps = 17/344 (4%)
Query: 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEAS 552
NI+V R RPF + K + +E E+ V K + + + F+ VFG
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 553 QEEVFLDTR-PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE-DW------GVNY 604
Q +V+ P++ V+ GYN IFAYGQTG+GKT+TM G + E W G+
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 605 RALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLL--SSDGPQRRLGIWNATLPNGLA 662
R L+ +FE + N + V V ++EIYNE++ DLL SSD +R + G+
Sbjct: 123 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 180
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI--LTIHVRGTDLKNGAI 720
+ +V + +V +++ G R +T +N SSRSHS+ +TIH++ T + +
Sbjct: 181 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 240
Query: 721 LR-GSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSK 779
++ G L+L+DLAGSE + RS A R REA +IN+SL LG VI AL + PHVPYR SK
Sbjct: 241 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 300
Query: 780 LTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGV 823
LT++LQ SLGG+ +T ++ ++P + ET+STL++A R +
Sbjct: 301 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 192/341 (56%), Gaps = 28/341 (8%)
Query: 496 IRVYCRIRPFLPGQ--SKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQ 553
+RV R+RP LP + Q+ ++ G + + G+D H F F+ V +A Q
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL------GRDRH--FGFHVVLAEDAGQ 64
Query: 554 EEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISST--EDWGVNYRALNDL 610
E V+ +PL+ + +G+N +FAYGQTGSGKTYTM ++S ++ G+ RA+ +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEA 124
Query: 611 FEISESRKNSIL-YEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMY 669
F++ + +N +L V V +E+Y E+ RDLL R + + N + +
Sbjct: 125 FKLID--ENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGN-VVLCGVKEV 181
Query: 670 SVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHV--RGTDLKN------GAIL 721
V+ +VL L+ +G R +T LN SSRSH++ T+ + RG G +L
Sbjct: 182 DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241
Query: 722 RGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALA---HKNPHVPYRNS 778
H +DLAGSERV ++ +TG+RL+E+ IN SL ALG+VI AL + H+PYR+S
Sbjct: 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDS 301
Query: 779 KLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAER 819
K+T++L+ SLGG AKT+M+ ++P + ET++TL +A R
Sbjct: 302 KITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 41/361 (11%)
Query: 494 GNIRVYCRIRPFLPGQSKKQT--TIEYIGENGELVVSNPLKQGKDNHRLFKFNKVF---- 547
+++V R+RPF + + + I+ G +V NP KQ K+ + F F+ +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV--NP-KQPKETPKSFSFDYSYWSHT 60
Query: 548 GPE----ASQEEVFLDT-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGV 602
PE ASQ++V+ D +++ +GYNVCIFAYGQTG+GK+YTM G + G+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK--QEKDQQGI 118
Query: 603 NYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPN-G 660
+ DLF I+++ +++ Y V V +EIY E+VRDLL+ P+ + + P G
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN---PKNKGNLRVREHPLLG 175
Query: 661 LAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTI------HVRGTD 714
V + S +V S D+ +LM+ G R V +T +NE SSRSH++ I H T+
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 715 LKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP--- 771
+ + + + L+DLAGSER D + A G RL+E +INKSL+ LG VI ALA +
Sbjct: 236 ITTEKVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 772 ---------HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSG 822
+PYR+S LT +L+ +LGG ++T M+ L+P +Y ET+STL++A+R
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 823 V 823
+
Sbjct: 354 I 354
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 41/361 (11%)
Query: 494 GNIRVYCRIRPFLPGQSKKQT--TIEYIGENGELVVSNPLKQGKDNHRLFKFNKVF---- 547
+++V R+RPF + + + I+ G +V NP KQ K+ + F F+ +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV--NP-KQPKETPKSFSFDYSYWSHT 60
Query: 548 GPE----ASQEEVFLDT-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGV 602
PE ASQ++V+ D +++ +GYNVCIFAYGQTG+GK+YTM G + G+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK--QEKDQQGI 118
Query: 603 NYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPN-G 660
+ DLF I+++ +++ Y V V +EIY E+VRDLL+ P+ + + P G
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN---PKNKGNLRVREHPLLG 175
Query: 661 LAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTI------HVRGTD 714
V + S +V S D+ +LM+ G R V +T +NE SSRSH++ I H T+
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 715 LKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP--- 771
+ + + + L+DLAGSER D + A G RL+E +INKSL+ LG VI ALA +
Sbjct: 236 ITTEKVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 772 ---------HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSG 822
+PYR+S LT +L+ +LGG ++T M+ L+P +Y ET+STL++A+R
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 823 V 823
+
Sbjct: 354 I 354
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 186 bits (473), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 41/361 (11%)
Query: 494 GNIRVYCRIRPFLPGQSKKQT--TIEYIGENGELVVSNPLKQGKDNHRLFKFNKVF---- 547
+++V R+RPF + + + I+ G +V NP KQ K+ + F F+ +
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV--NP-KQPKETPKSFSFDYSYWSHT 76
Query: 548 GPE----ASQEEVFLDT-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGV 602
PE ASQ++V+ D +++ +GYNVCIFAYGQTG+GK+YTM G + G+
Sbjct: 77 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK--QEKDQQGI 134
Query: 603 NYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPN-G 660
+ DLF I+++ +++ Y V V +EIY E+VRDLL+ P+ + + P G
Sbjct: 135 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN---PKNKGNLRVREHPLLG 191
Query: 661 LAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTI------HVRGTD 714
V + S +V S D+ +LM+ G R V +T +NE SSRSH++ I H T+
Sbjct: 192 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 251
Query: 715 LKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP--- 771
+ + + + L+DLAGSER D + A G RL+E +INKSL+ LG VI ALA +
Sbjct: 252 ITTEKVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 309
Query: 772 ---------HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSG 822
+PYR+S LT +L+ +LGG ++T M+ L+P +Y ET+STL++A+R
Sbjct: 310 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 369
Query: 823 V 823
+
Sbjct: 370 I 370
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 41/361 (11%)
Query: 494 GNIRVYCRIRPFLPGQSKKQT--TIEYIGENGELVVSNPLKQGKDNHRLFKFNKVF---- 547
+++V R+RPF + + + I+ G +V NP KQ K+ + F F+ +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV--NP-KQPKETPKSFSFDYSYWSHT 60
Query: 548 GPE----ASQEEVFLDT-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGV 602
PE ASQ++V+ D +++ +GYNVCIFAYGQTG+GK+YTM G + G+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK--QEKDQQGI 118
Query: 603 NYRALNDLFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPN-G 660
+ DLF I+++ +++ Y V V +EIY E+VRDLL+ P+ + + P G
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN---PKNKGNLRVREHPLLG 175
Query: 661 LAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTI------HVRGTD 714
V + S +V S D+ +LM+ G R V +T +NE SSRSH++ I H T+
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 715 LKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP--- 771
+ + + + L+DLAGSER D + A G RL+E +INKSL+ LG VI ALA +
Sbjct: 236 ITTEKVSK--ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 772 ---------HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSG 822
+PYR+S LT +L+ +LGG ++T M+ L+P +Y ET+STL++A+R
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 823 V 823
+
Sbjct: 354 I 354
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 179 bits (454), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 190/341 (55%), Gaps = 28/341 (8%)
Query: 496 IRVYCRIRPFLPGQ--SKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQ 553
+RV R+RP LP + Q+ ++ G + + G+D H F F+ V +A Q
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL------GRDRH--FGFHVVLAEDAGQ 64
Query: 554 EEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISST--EDWGVNYRALNDL 610
E V+ +PL+ + +G+N +FAYGQTGSGKTYTM ++S ++ G+ RA+ +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEA 124
Query: 611 FEISESRKNSIL-YEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMY 669
F++ + +N +L V V +E+Y E+ RDLL R + + N + +
Sbjct: 125 FKLID--ENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGN-VVLCGVKEV 181
Query: 670 SVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHV--RGTDLKN------GAIL 721
V+ +VL L+ +G R +T LN SSRSH++ T+ + RG G +L
Sbjct: 182 DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLL 241
Query: 722 RGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALA---HKNPHVPYRNS 778
H +DLAGSERV ++ +TG+ +E+ IN SL ALG+VI AL + ++PYR+S
Sbjct: 242 VSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDS 301
Query: 779 KLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAER 819
K+T++L+ SLGG AKT+M+ ++P + ET++TL +A R
Sbjct: 302 KITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 181/347 (52%), Gaps = 47/347 (13%)
Query: 541 FKFNKVFGPEASQEEVFLDTRPLIRSV--------LDGYNVCIFAYGQTGSGKTYTMSGP 592
F F+K F +++E + + S+ +GY+ CIFAYGQTGSGK+YTM G
Sbjct: 98 FTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG- 156
Query: 593 CISSTEDWGVNYRALNDLFEISESRKN---SILYEVGVQMVEIYNEQVRDLLSS---DGP 646
+ + G+ R DLF+ S ++ +I Y V V E+YNE VRDLL+ + P
Sbjct: 157 ---TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKP 213
Query: 647 QRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSIL 706
L + + G V + + V+ +++ M IG +R V ST +N+ SSRSH++
Sbjct: 214 PYYLKVRESPT-EGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVF 272
Query: 707 TIHVRGT--DLKNGAILRGS--LHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDV 762
TI ++ DL+ S + L+DLAGSER +EATG RLRE +INKSL+ LG V
Sbjct: 273 TIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRV 332
Query: 763 IFALAHK----------------------NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQL 800
I ALA N VPYR+S LT +L+ SLGG +KT M+ +
Sbjct: 333 IAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACI 392
Query: 801 NPDVDSYSETISTLKFAERVSGVELGAARSNKEGSDVRELMEQVGSL 847
+P Y ET+STL++A++ + A + +G E Q+ S+
Sbjct: 393 SP--TDYDETLSTLRYADQAKRIRTRAVVNQVDGVSAAERDAQIPSI 437
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 185/341 (54%), Gaps = 25/341 (7%)
Query: 490 QDLKGNIRVYCRIRPFLPGQSKKQTTIEYIG-ENGELVVSNPLKQGKDNHR---LFKFNK 545
Q +RV R+RPF+ G + G ++ L ++N NH+ ++F+
Sbjct: 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIAN-----WRNHQETLKYQFDA 71
Query: 546 VFGPEASQEEVFLDT-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNY 604
+G ++Q++++ + +P++R +L+G N + AYG TG+GKT+TM G S E GV
Sbjct: 72 FYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG----SPEQPGVIP 127
Query: 605 RALNDLFEIS-----ESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPN 659
RAL DL +++ E R ++ V + +EIY E+V DLL D L I N
Sbjct: 128 RALMDLLQLTREEGAEGRPWAL--SVTMSYLEIYQEKVLDLL--DPASGDLVIREDCRGN 183
Query: 660 GLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTD-LKNG 718
+ +P S + S AD NR V +T LN+RSSRSH++L + V + L
Sbjct: 184 -ILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPF 242
Query: 719 AILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNS 778
G L+LIDLAGSE R+ G RL+E+ IN SL LG V+ AL P VPYR+S
Sbjct: 243 RQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDS 302
Query: 779 KLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAER 819
KLT++LQ SLGG A ++++ + P+ Y +T+S L FA R
Sbjct: 303 KLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAAR 343
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 159/290 (54%), Gaps = 17/290 (5%)
Query: 541 FKFNKVFGPEASQEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTED 599
FK + V +ASQ+ V+ + ++ LDGYN I YGQTG+GKTYTM G +TE+
Sbjct: 74 FKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG----ATEN 128
Query: 600 W---GVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNAT 656
+ G+ RAL +F + E R + V V +EIYNE + DLLS+ P + T
Sbjct: 129 YKHRGILPRALQQVFRMIEERPTHAI-TVRVSYLEIYNESLFDLLSTL-PYVGPSVTPMT 186
Query: 657 L---PNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT 713
+ P G+ + S++ D L+ G NR + S +N+ SSRSH I TI++
Sbjct: 187 IVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH 246
Query: 714 D--LKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALA-HKN 770
L + ++L+DLAGSER+ +S + G L+EA +INKSLS L I AL K
Sbjct: 247 SRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKR 306
Query: 771 PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERV 820
H+P+R KLT L+ SLGG +++ + + ET+S+L+FA R+
Sbjct: 307 DHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRM 356
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 182/336 (54%), Gaps = 27/336 (8%)
Query: 493 KGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELV--VSNPLKQGKDNHRLFKFNKVFGPE 550
+G + V R+RP S++++ +GE ++ N + D + F F++VF
Sbjct: 3 EGAVAVCVRVRPL---NSREES----LGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGN 55
Query: 551 ASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALND 609
+ + V+ + P+I S + GYN IFAYGQT SGKTYTM G S + GV RA++D
Sbjct: 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG----SEDHLGVIPRAIHD 111
Query: 610 LFE-ISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASM 668
+F+ I + L V +EIYNE + DLL + L I + + V + +
Sbjct: 112 IFQKIKKFPDREFLLR--VSYMEIYNETITDLLCGTQKMKPL-IIREDVNRNVYVADLTE 168
Query: 669 YSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK-----NGAILRG 723
V ++ L+ + G +R T +N+RSSRSH+I + + + G++
Sbjct: 169 EVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVS 228
Query: 724 SLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALA--HKNPHVPYRNSKLT 781
L+L+DLAGSER ++ A G RL+E +IN+SL LG VI L+ + YR+SKLT
Sbjct: 229 HLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLT 288
Query: 782 QVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFA 817
++LQ+SLGG AKT ++ + P S+ ET++ L+FA
Sbjct: 289 RILQNSLGGNAKTRIICTITP--VSFDETLTALQFA 322
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 150/286 (52%), Gaps = 15/286 (5%)
Query: 541 FKFNKVFGPEASQEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTED 599
F F+ F AS E V+ RPL++++ +G FAYGQTGSGKT+TM G +++
Sbjct: 123 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 182
Query: 600 W--GVNYRALNDLFEI-SESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNAT 656
G+ A D+F + ++ R ++ EV V EIYN +V DLL+ R L
Sbjct: 183 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVL----ED 238
Query: 657 LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK 716
+ V Y V DV++++N+G R T N SSRSH+ I +R
Sbjct: 239 SRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR----- 293
Query: 717 NGAILRGSLHLIDLAGSER-VDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPY 775
L G L+DLAG+ER D S A E INKSL AL + I AL H P+
Sbjct: 294 TKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPF 353
Query: 776 RNSKLTQVLQSSLGGQ-AKTLMMVQLNPDVDSYSETISTLKFAERV 820
R SKLTQVL+ S G+ ++T M+ ++P + S T++TL++A+RV
Sbjct: 354 RESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 399
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 150/286 (52%), Gaps = 15/286 (5%)
Query: 541 FKFNKVFGPEASQEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTED 599
F F+ F AS E V+ RPL++++ +G FAYGQTGSGKT+TM G +++
Sbjct: 51 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 110
Query: 600 W--GVNYRALNDLFEI-SESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNAT 656
G+ A D+F + ++ R ++ EV V EIYN +V DLL+ R L
Sbjct: 111 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVL----ED 166
Query: 657 LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK 716
+ V Y V DV++++N+G R T N SSRSH+ I +R
Sbjct: 167 SRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR----- 221
Query: 717 NGAILRGSLHLIDLAGSER-VDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPY 775
L G L+DLAG+ER D S A E INKSL AL + I AL H P+
Sbjct: 222 TKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPF 281
Query: 776 RNSKLTQVLQSSLGGQ-AKTLMMVQLNPDVDSYSETISTLKFAERV 820
R SKLTQVL+ S G+ ++T M+ ++P + S T++TL++A+RV
Sbjct: 282 RESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 327
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 150/293 (51%), Gaps = 29/293 (9%)
Query: 541 FKFNKVFGPEASQEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTED 599
F F+ F AS E V+ RPL++++ +G FAYGQTGSGKT+TM G ++
Sbjct: 103 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQN 162
Query: 600 W--GVNYRALNDLFEISESRKNSILY-----EVGVQMVEIYNEQVRDLLSSDGPQRRLGI 652
G+ A D+F + KN Y EV V EIYN ++ DLL+ R
Sbjct: 163 ASKGIYAMASRDVFLL----KNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLR---- 214
Query: 653 WNATLPNG---LAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIH 709
L +G + V + V S DV++++++G R T N SSRSH+ I
Sbjct: 215 ---VLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQII 271
Query: 710 VRGTDLKNGAILRGSLHLIDLAGSER-VDRSEATGDRLREAQHINKSLSALGDVIFALAH 768
+R + G L+DLAG+ER D S A E INKSL AL + I AL
Sbjct: 272 LRAK-----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 326
Query: 769 KNPHVPYRNSKLTQVLQSSLGGQ-AKTLMMVQLNPDVDSYSETISTLKFAERV 820
H P+R SKLTQVL+ S G+ ++T M+ ++P + S T++TL++A+RV
Sbjct: 327 NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRV 379
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 149/289 (51%), Gaps = 21/289 (7%)
Query: 541 FKFNKVFGPEASQEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTED 599
F+F+ F A E V+ RPL+ ++ + FAYGQTGSGKT+TM G +D
Sbjct: 141 FRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQD 200
Query: 600 W--GVNYRALNDLF-EISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNAT 656
G+ A D+F + + + +V EIY+ +V DLL+ R
Sbjct: 201 CSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLR-------V 253
Query: 657 LPNG---LAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT 713
L +G + V V+ DVL+L++IG R T+ N SSRSH++ I +R
Sbjct: 254 LEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR-- 311
Query: 714 DLKNGAILRGSLHLIDLAGSER-VDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPH 772
+ G L G LIDLAG+ER D S A E INKSL AL + I AL PH
Sbjct: 312 --RKGK-LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPH 368
Query: 773 VPYRNSKLTQVLQSS-LGGQAKTLMMVQLNPDVDSYSETISTLKFAERV 820
P+R SKLTQVL+ S +G ++T M+ ++P + S T++TL++A RV
Sbjct: 369 TPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRV 417
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 152/290 (52%), Gaps = 20/290 (6%)
Query: 541 FKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTM--SGPCISST 597
F F+ F SQ+E++ PL+ +L+G+ AYGQTG+GK+Y+M + P
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 598 EDWGVNYRALNDLFEISESRK--NSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNA 655
E G+ RAL D+FE +R+ N +V +EIYNE+ DLL G + + A
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL---GSTPHMPMVAA 179
Query: 656 TLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL 715
+P + S AD+ ++ +G NR V T +N SSRSH+I+TIHV+
Sbjct: 180 RCQRCTCLP------LHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTH 233
Query: 716 KNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPY 775
+ ++++DLAGSE V R+ G +E +IN L ++ V+ ++A + +PY
Sbjct: 234 HS------RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPY 287
Query: 776 RNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVEL 825
R+S LT VLQ+SL Q+ + ++P SET+STL+F L
Sbjct: 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 151/282 (53%), Gaps = 20/282 (7%)
Query: 541 FKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTM--SGPCISST 597
F F+ F SQ+E++ PL+ +L+G+ AYGQTG+GK+Y+M + P
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 598 EDWGVNYRALNDLFEISESRK--NSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNA 655
E G+ RAL D+FE +R+ N +V +EIYNE+ DLL G + + A
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL---GSTPHMPMVAA 179
Query: 656 TLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL 715
+P + S AD+ ++ +G NR V T +N SSRSH+I+TIHV+
Sbjct: 180 RCQRCTCLP------LHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTH 233
Query: 716 KNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPY 775
+ ++++DLAGSE V R+ G +E +IN L ++ V+ ++A + +PY
Sbjct: 234 HS------RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPY 287
Query: 776 RNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFA 817
R+S LT VLQ+SL Q+ + ++P SET+STL+F
Sbjct: 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFG 329
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/338 (31%), Positives = 173/338 (51%), Gaps = 24/338 (7%)
Query: 496 IRVYCRIRPFLPGQSKKQTT-IEYIGENGELVVSNP-----LKQGKDNHRLFKFNKVFGP 549
I+V R RP + KK+ + I + N L + P + + + H F +KVF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHE-FIVDKVFDD 60
Query: 550 EASQEEVFLDT-RPLIRSVLDGYNVC-IFAYGQTGSGKTYTMSGPCISSTEDW-GVNYRA 606
V+ +T +PLI + + VC FAYGQTGSGKTYTM G D G+ A
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 607 LNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNG---LAV 663
D+F + + EIY ++ DLL Q+R + A L NG + V
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL-----QKRKMV--AALENGKKEVVV 173
Query: 664 PEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRG 723
+ + V + +++ M G++ R + + N+ SSRSH+IL I ++ + KN ++ G
Sbjct: 174 KDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-KNTSL--G 230
Query: 724 SLHLIDLAGSER-VDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQ 782
+ IDLAGSER D + +IN+SL AL + I A+ H+P+R+S+LT+
Sbjct: 231 KIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTK 290
Query: 783 VLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERV 820
VL+ G++K++M+ ++P + +T++TL+++ RV
Sbjct: 291 VLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 132/254 (51%), Gaps = 34/254 (13%)
Query: 495 NIRVYCRIRP-----------FLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKF 543
+I+V CR RP F+P ++T + + QGK + F
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVV--------------IGQGKP----YVF 48
Query: 544 NKVFGPEASQEEVF-LDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGV 602
++V P +QE+V+ + +++ VL+GYN IFAYGQT SGKT+TM G + + G+
Sbjct: 49 DRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK-LHDPQLMGI 107
Query: 603 NYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLA 662
R +D+F+ S ++ + + V EIY +++RDLL + +P
Sbjct: 108 IPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVP---Y 164
Query: 663 VPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILR 722
V + V S +V+++++ G NR V T +NE SSRSHSI I+++ +++ L
Sbjct: 165 VKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLS 224
Query: 723 GSLHLIDLAGSERV 736
G L+L+DLAGSE+V
Sbjct: 225 GKLYLVDLAGSEKV 238
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 749 AQHINKSLSALGDVIFALAH-KNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSY 807
A++INKSLSALG+VI ALA HVPYR+SK+T++LQ SL G +T +++ +P V +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 808 SETISTLKFAERVSGVE 824
+ET STL F +R ++
Sbjct: 61 AETKSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 753 NKSLSALGDVIFALAH-KNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETI 811
NKSLSALG+VI ALA HVPYR+SK+T++LQ SLGG +T +++ +P V + +ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 812 STLKFAERVSGVE 824
STL F +R ++
Sbjct: 61 STLMFGQRAKTIK 73
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 61 LVDGTVLCLVLNKLSPDSV-------EMGANFEPGPANVKRFLAAMDDMGL---PRFELS 110
L DGT+LC ++NKL P SV + E N+ F+ AM G+ FE +
Sbjct: 42 LKDGTILCTLMNKLQPGSVPKINRSMQNWHQLE----NLSNFIKAMVSYGMNPVDLFEAN 97
Query: 111 DL-EQGNMAPVLQCLRSL 127
DL E GNM V L +L
Sbjct: 98 DLFESGNMTQVQVSLLAL 115
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 54 EEKLRACLVDGTVLCLVLNKLSPDSVEMGANFEPGP-------ANVKRFLAAMD-DMGLP 105
E L+A L DG VLC +L +L P ++E P P +N++ FL + L
Sbjct: 38 EGFLQASLKDGVVLCRLLERLLPGTIE---KVYPEPRSESECLSNIREFLRGCGASLRLE 94
Query: 106 RFELSDLEQG-NMAPVLQCLRSL 127
F+ +DL QG N VL L +L
Sbjct: 95 TFDANDLYQGQNFNKVLSSLVTL 117
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 54 EEKLRACLVDGTVLCLVLNKLSPDSVEMGANFEPGPA-------NVKRFLAAMDDMGLPR 106
EE L++ L +G VLC ++N+L P SVE F P N+ FL + +
Sbjct: 32 EEFLKSSLKNGVVLCKLINRLMPGSVE---KFCLDPQTEADCINNINDFLKGCATLQVEI 88
Query: 107 FELSDLEQG-NMAPVLQCLRSLR 128
F+ DL G N + VL L ++
Sbjct: 89 FDPDDLYSGVNFSKVLSTLLAVN 111
>pdb|2RR8|A Chain A, Solution Structure Of Calponin Homology Domain Of Iqgap1
Length = 190
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 91 NVKRFLAAMDDMGLPRF---ELSDL-EQGNMAPVLQCLRSLRASFSFCDEEDTIQDHYRK 146
NV ++L AMD++GLP+ E +D+ ++ NM + C+ +L IQD Y K
Sbjct: 95 NVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQIQDLYGK 154
>pdb|3I6X|A Chain A, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|B Chain B, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|C Chain C, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|D Chain D, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
Length = 193
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 91 NVKRFLAAMDDMGLPRF---ELSDL-EQGNMAPVLQCLRSLRASFSFCDEEDTIQDHYRK 146
NV ++L AMD++GLP+ E +D+ ++ NM + C+ +L IQD Y K
Sbjct: 117 NVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQIQDLYGK 176
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 429 QLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNE 488
++ +++DL+ A T H+++ T+K+ + F+ L +LK+ +D ++I N +L+
Sbjct: 50 EVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCG--NIINMHNVKLF-L 106
Query: 489 VQDLKGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSN 529
Q L+G YC + L K Q + I E GEL +++
Sbjct: 107 FQLLRG--LAYCHRQKVLHRDLKPQNLL--INERGELKLAD 143
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 12 STGTPAENIEALDNMAEGNQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVL 71
S+G+ + IE + + L++W+ + E + L DGTVLC ++
Sbjct: 2 SSGSSGQKIE---KQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELI 58
Query: 72 NKLSPD------SVEMGANFEPGPANVKRFLAAMDDMGLPR---FELSDLEQG-NMAPVL 121
N L P+ ++ + +FL A + G+ F+ DL +G NMA V
Sbjct: 59 NALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQ 118
Query: 122 QCLRSL 127
+ L +L
Sbjct: 119 RTLMNL 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,087,990
Number of Sequences: 62578
Number of extensions: 1103161
Number of successful extensions: 2550
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2275
Number of HSP's gapped (non-prelim): 73
length of query: 1055
length of database: 14,973,337
effective HSP length: 109
effective length of query: 946
effective length of database: 8,152,335
effective search space: 7712108910
effective search space used: 7712108910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)