Query 001550
Match_columns 1055
No_of_seqs 623 out of 2904
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 2.7E-97 6E-102 888.5 44.9 594 225-851 71-668 (670)
2 KOG4280 Kinesin-like protein [ 100.0 1.9E-84 4.2E-89 755.3 25.9 353 493-850 4-364 (574)
3 KOG0243 Kinesin-like protein [ 100.0 2.1E-82 4.5E-87 763.9 30.3 383 494-879 49-468 (1041)
4 KOG0245 Kinesin-like protein [ 100.0 1.1E-82 2.4E-87 751.7 24.1 355 494-853 4-379 (1221)
5 PLN03188 kinesin-12 family pro 100.0 5.5E-78 1.2E-82 730.9 38.3 360 482-862 82-466 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 2.5E-77 5.5E-82 674.7 34.5 320 495-823 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 3.6E-76 7.9E-81 665.1 35.6 320 494-823 1-337 (337)
8 KOG0240 Kinesin (SMY1 subfamil 100.0 5.4E-77 1.2E-81 676.3 26.9 327 493-828 6-336 (607)
9 KOG0242 Kinesin-like protein [ 100.0 5.1E-76 1.1E-80 707.5 27.6 352 493-853 5-363 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.5E-74 3.3E-79 653.7 35.0 316 494-821 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.7E-73 3.6E-78 647.9 37.4 328 494-828 1-354 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 7E-73 1.5E-77 634.8 33.9 315 494-821 1-322 (322)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.8E-72 3.9E-77 638.3 37.6 334 494-830 2-350 (352)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 3.7E-72 8E-77 631.6 36.3 326 494-823 1-333 (333)
15 cd01376 KISc_KID_like Kinesin 100.0 3.8E-72 8.3E-77 628.0 35.6 314 495-821 1-319 (319)
16 KOG0241 Kinesin-like protein [ 100.0 3.1E-73 6.7E-78 658.4 27.2 355 494-853 4-382 (1714)
17 cd01366 KISc_C_terminal Kinesi 100.0 9.1E-72 2E-76 627.0 37.8 325 493-826 1-329 (329)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 6.2E-72 1.3E-76 631.2 36.1 321 495-824 2-341 (341)
19 cd01369 KISc_KHC_KIF5 Kinesin 100.0 9.5E-72 2.1E-76 626.1 36.5 320 494-823 2-325 (325)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 1.3E-71 2.9E-76 624.0 35.1 315 495-823 1-321 (321)
21 cd01375 KISc_KIF9_like Kinesin 100.0 8.6E-71 1.9E-75 620.7 35.4 320 495-821 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 1.5E-67 3.3E-72 591.7 37.8 322 495-821 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 7.6E-67 1.6E-71 588.1 37.2 326 495-829 1-334 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 1E-67 2.2E-72 594.8 25.5 321 501-823 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 1E-63 2.3E-68 579.2 25.3 331 491-827 28-440 (809)
26 KOG0246 Kinesin-like protein [ 100.0 5E-63 1.1E-67 560.1 28.7 326 494-827 208-545 (676)
27 KOG0244 Kinesin-like protein [ 100.0 5.1E-63 1.1E-67 588.4 8.8 342 502-854 1-349 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 9.6E-59 2.1E-63 552.9 29.5 310 538-854 55-369 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.1E-49 4.6E-54 412.3 18.9 176 556-802 8-186 (186)
30 KOG2046 Calponin [Cytoskeleton 99.9 2.1E-24 4.6E-29 221.5 10.8 124 8-136 3-134 (193)
31 COG5199 SCP1 Calponin [Cytoske 99.7 2.4E-18 5.2E-23 168.6 7.5 110 23-137 6-122 (178)
32 cd00014 CH Calponin homology d 99.5 8.7E-15 1.9E-19 138.0 7.4 98 31-131 2-106 (107)
33 COG5261 IQG1 Protein involved 99.4 2.6E-13 5.7E-18 161.3 9.3 102 30-137 44-154 (1054)
34 KOG2128 Ras GTPase-activating 99.4 2.6E-13 5.6E-18 169.1 9.2 138 4-148 5-162 (1401)
35 PF00307 CH: Calponin homology 99.3 3.4E-12 7.3E-17 120.5 5.8 99 32-132 1-108 (108)
36 smart00033 CH Calponin homolog 99.3 4E-12 8.6E-17 118.8 5.8 93 32-127 2-103 (103)
37 KOG2996 Rho guanine nucleotide 99.1 1.9E-10 4.1E-15 132.7 7.7 102 31-132 3-120 (865)
38 COG5059 KIP1 Kinesin-like prot 99.0 1.8E-12 3.9E-17 156.4 -11.2 271 479-767 291-566 (568)
39 KOG0532 Leucine-rich repeat (L 99.0 5E-10 1.1E-14 130.7 5.8 101 30-132 572-687 (722)
40 KOG0046 Ca2+-binding actin-bun 97.7 3.1E-05 6.8E-10 90.3 3.9 105 12-116 101-220 (627)
41 PF11971 CAMSAP_CH: CAMSAP CH 97.3 0.00031 6.7E-09 65.3 4.7 65 48-112 7-81 (85)
42 PF00038 Filament: Intermediat 97.1 0.5 1.1E-05 53.5 29.5 47 330-376 98-151 (312)
43 PHA02562 46 endonuclease subun 96.9 0.99 2.1E-05 55.1 30.9 58 307-364 213-270 (562)
44 KOG2129 Uncharacterized conser 96.8 0.091 2E-06 60.6 19.8 31 432-462 254-284 (552)
45 KOG0977 Nuclear envelope prote 96.7 0.41 8.9E-06 58.1 24.5 131 259-396 97-260 (546)
46 PF05667 DUF812: Protein of un 96.6 0.95 2.1E-05 56.1 28.1 39 35-74 38-78 (594)
47 PF07888 CALCOCO1: Calcium bin 96.6 2 4.3E-05 52.4 29.9 24 470-493 382-405 (546)
48 PF09726 Macoilin: Transmembra 96.6 0.63 1.4E-05 58.7 26.6 32 269-300 422-453 (697)
49 KOG0161 Myosin class II heavy 96.6 0.91 2E-05 62.4 29.4 15 381-395 1016-1030(1930)
50 TIGR02169 SMC_prok_A chromosom 96.5 1.5 3.2E-05 58.1 30.9 13 669-681 624-636 (1164)
51 PF07888 CALCOCO1: Calcium bin 96.5 2.1 4.6E-05 52.2 28.9 21 346-366 280-300 (546)
52 KOG0250 DNA repair protein RAD 96.4 1.2 2.6E-05 57.5 27.5 16 669-684 600-615 (1074)
53 KOG4673 Transcription factor T 96.3 1.5 3.2E-05 53.9 26.0 56 291-346 479-534 (961)
54 TIGR00606 rad50 rad50. This fa 96.2 1.4 3.1E-05 59.6 28.8 66 412-477 883-948 (1311)
55 COG1196 Smc Chromosome segrega 96.2 2.4 5.2E-05 56.8 30.5 63 754-827 1072-1145(1163)
56 KOG0971 Microtubule-associated 96.2 2.1 4.5E-05 54.1 27.0 43 56-100 30-72 (1243)
57 PF12128 DUF3584: Protein of u 96.2 2.2 4.9E-05 57.3 29.8 36 435-470 827-862 (1201)
58 COG1196 Smc Chromosome segrega 96.1 1.9 4.2E-05 57.7 28.9 12 670-681 618-629 (1163)
59 TIGR02168 SMC_prok_B chromosom 96.1 3.5 7.5E-05 54.4 31.0 12 814-825 1155-1166(1179)
60 PRK11637 AmiB activator; Provi 96.1 1.7 3.8E-05 51.7 25.6 13 700-712 405-417 (428)
61 PF15397 DUF4618: Domain of un 96.0 3 6.4E-05 46.6 25.0 94 287-394 46-147 (258)
62 PF09726 Macoilin: Transmembra 96.0 0.79 1.7E-05 57.8 23.1 58 254-319 422-479 (697)
63 PRK11637 AmiB activator; Provi 96.0 4.5 9.7E-05 48.3 28.4 7 586-592 371-377 (428)
64 KOG0996 Structural maintenance 96.0 2.4 5.3E-05 55.0 26.7 41 92-133 91-137 (1293)
65 KOG0161 Myosin class II heavy 95.8 3.6 7.9E-05 56.9 29.3 77 326-403 1067-1143(1930)
66 PF12128 DUF3584: Protein of u 95.8 0.92 2E-05 60.8 23.9 135 325-462 625-767 (1201)
67 PRK02224 chromosome segregatio 95.7 6 0.00013 51.3 30.3 14 31-44 110-123 (880)
68 KOG1029 Endocytic adaptor prot 95.7 2.8 6E-05 52.3 24.5 26 336-361 431-456 (1118)
69 COG1340 Uncharacterized archae 95.6 5.5 0.00012 45.2 26.0 26 307-332 62-87 (294)
70 KOG0995 Centromere-associated 95.6 8.1 0.00018 47.2 30.2 89 32-134 72-174 (581)
71 TIGR00606 rad50 rad50. This fa 95.6 4.1 8.8E-05 55.4 28.8 26 380-405 883-908 (1311)
72 PF09755 DUF2046: Uncharacteri 95.4 3 6.5E-05 47.6 22.4 148 311-460 110-258 (310)
73 PF06395 CDC24: CDC24 Calponin 95.4 0.036 7.8E-07 52.1 6.1 73 55-127 4-88 (89)
74 PF10498 IFT57: Intra-flagella 95.3 2.3 5E-05 49.8 22.0 44 91-134 72-116 (359)
75 PRK02224 chromosome segregatio 95.3 9.3 0.0002 49.6 29.8 15 195-209 128-142 (880)
76 PF05667 DUF812: Protein of un 95.1 2.5 5.4E-05 52.6 22.5 40 69-110 40-89 (594)
77 PF05010 TACC: Transforming ac 95.1 4.7 0.0001 43.8 21.8 80 316-395 71-153 (207)
78 PRK03918 chromosome segregatio 95.1 16 0.00034 47.4 31.6 10 231-240 146-155 (880)
79 PF15397 DUF4618: Domain of un 95.1 7.5 0.00016 43.5 24.9 47 346-392 117-163 (258)
80 PHA02562 46 endonuclease subun 95.0 11 0.00024 46.2 27.8 15 196-210 130-144 (562)
81 KOG0996 Structural maintenance 94.9 14 0.0003 48.6 28.1 34 258-291 292-325 (1293)
82 KOG1029 Endocytic adaptor prot 94.9 9.6 0.00021 47.9 25.5 12 261-272 324-335 (1118)
83 KOG4643 Uncharacterized coiled 94.9 2.7 5.9E-05 53.8 21.6 32 295-326 186-217 (1195)
84 KOG0994 Extracellular matrix g 94.7 18 0.0004 47.3 28.1 17 483-499 1738-1754(1758)
85 KOG0977 Nuclear envelope prote 94.7 13 0.00028 45.7 26.3 11 564-574 382-392 (546)
86 KOG4674 Uncharacterized conser 94.6 4.8 0.0001 55.0 24.4 82 317-402 741-822 (1822)
87 KOG0971 Microtubule-associated 94.6 6.8 0.00015 49.8 23.8 32 333-364 394-425 (1243)
88 KOG0933 Structural maintenance 94.6 20 0.00044 46.5 28.0 20 56-75 480-499 (1174)
89 KOG1937 Uncharacterized conser 94.5 6.4 0.00014 46.7 22.2 89 314-402 272-362 (521)
90 PRK04863 mukB cell division pr 94.5 8.3 0.00018 52.9 26.6 49 447-495 440-488 (1486)
91 COG1579 Zn-ribbon protein, pos 94.4 2.7 5.9E-05 46.5 18.2 93 308-406 53-145 (239)
92 PF15070 GOLGA2L5: Putative go 94.4 19 0.00042 45.2 28.3 16 473-488 244-259 (617)
93 KOG0250 DNA repair protein RAD 94.2 21 0.00046 46.7 27.8 12 604-615 533-544 (1074)
94 KOG0612 Rho-associated, coiled 94.2 16 0.00034 48.3 26.4 17 55-71 217-236 (1317)
95 PF05483 SCP-1: Synaptonemal c 94.1 21 0.00046 44.6 26.2 69 335-403 527-605 (786)
96 KOG0976 Rho/Rac1-interacting s 94.1 23 0.00049 44.9 26.7 12 321-332 284-295 (1265)
97 COG1579 Zn-ribbon protein, pos 94.1 10 0.00022 42.0 21.8 17 303-319 27-43 (239)
98 PF15070 GOLGA2L5: Putative go 93.9 23 0.00051 44.5 27.8 19 349-367 87-105 (617)
99 PF08317 Spc7: Spc7 kinetochor 93.9 12 0.00027 43.1 23.3 27 287-313 136-162 (325)
100 PF15035 Rootletin: Ciliary ro 93.8 6.5 0.00014 41.9 19.1 65 399-463 109-173 (182)
101 KOG0964 Structural maintenance 93.8 19 0.00041 46.5 25.5 18 258-275 188-205 (1200)
102 KOG0243 Kinesin-like protein [ 93.7 17 0.00038 47.5 25.8 27 230-262 321-350 (1041)
103 PF10473 CENP-F_leu_zip: Leuci 93.7 5.8 0.00013 40.6 17.7 74 337-418 40-113 (140)
104 PRK03918 chromosome segregatio 93.6 16 0.00034 47.4 26.2 11 34-44 112-122 (880)
105 PRK01156 chromosome segregatio 93.5 33 0.00072 44.8 29.4 25 480-505 433-457 (895)
106 PF05911 DUF869: Plant protein 93.4 3.8 8.2E-05 52.3 19.4 96 311-407 593-688 (769)
107 PF10481 CENP-F_N: Cenp-F N-te 93.4 3.3 7.2E-05 46.2 16.4 26 468-493 164-189 (307)
108 PRK09039 hypothetical protein; 93.4 7.1 0.00015 45.5 20.2 15 231-245 35-49 (343)
109 KOG4807 F-actin binding protei 93.2 15 0.00033 42.8 21.8 33 347-379 419-451 (593)
110 PRK04863 mukB cell division pr 93.2 49 0.0011 45.8 30.2 23 835-857 1211-1233(1486)
111 PF10174 Cast: RIM-binding pro 93.2 10 0.00022 48.6 22.6 60 432-498 665-724 (775)
112 KOG4674 Uncharacterized conser 93.1 34 0.00074 47.4 27.9 48 433-480 1027-1074(1822)
113 KOG0612 Rho-associated, coiled 93.1 9.7 0.00021 50.1 22.0 26 378-403 667-692 (1317)
114 PF12325 TMF_TATA_bd: TATA ele 93.1 2 4.2E-05 42.8 12.9 78 315-393 31-111 (120)
115 PRK04778 septation ring format 93.0 18 0.00038 45.0 24.1 57 310-366 285-341 (569)
116 KOG0995 Centromere-associated 92.8 30 0.00066 42.5 28.4 12 483-494 495-506 (581)
117 COG5185 HEC1 Protein involved 92.8 27 0.00059 41.9 24.6 48 235-284 228-283 (622)
118 COG4372 Uncharacterized protei 92.8 20 0.00043 42.0 21.8 21 570-593 391-411 (499)
119 KOG0933 Structural maintenance 92.7 17 0.00038 47.0 23.1 24 336-359 816-839 (1174)
120 smart00787 Spc7 Spc7 kinetocho 92.7 18 0.00038 41.8 21.7 29 286-314 130-158 (312)
121 COG4372 Uncharacterized protei 92.5 26 0.00057 41.1 27.6 9 271-279 80-88 (499)
122 KOG4643 Uncharacterized coiled 92.5 44 0.00095 43.6 28.5 14 480-493 544-557 (1195)
123 PF00038 Filament: Intermediat 92.5 23 0.00049 40.2 30.8 31 270-300 73-103 (312)
124 PRK04778 septation ring format 92.3 20 0.00044 44.5 23.4 16 29-44 28-43 (569)
125 PF00308 Bac_DnaA: Bacterial d 92.3 0.074 1.6E-06 57.6 2.1 50 540-591 4-53 (219)
126 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.3 13 0.00029 37.3 18.0 56 434-492 76-131 (132)
127 COG0556 UvrB Helicase subunit 92.1 0.29 6.2E-06 58.9 6.6 93 540-637 4-100 (663)
128 PF05622 HOOK: HOOK protein; 91.7 0.19 4.2E-06 63.5 5.2 43 30-79 7-49 (713)
129 PF15619 Lebercilin: Ciliary p 91.7 22 0.00047 38.3 23.9 124 347-491 66-189 (194)
130 PF14988 DUF4515: Domain of un 91.6 23 0.0005 38.5 21.2 59 349-407 18-76 (206)
131 PF06818 Fez1: Fez1; InterPro 91.5 15 0.00032 39.8 18.1 97 246-361 7-106 (202)
132 COG1340 Uncharacterized archae 91.5 30 0.00065 39.5 21.5 15 463-477 200-214 (294)
133 PF12718 Tropomyosin_1: Tropom 91.3 13 0.00028 38.2 16.7 20 383-402 78-97 (143)
134 PF05701 WEMBL: Weak chloropla 91.0 47 0.001 41.0 28.8 57 345-401 175-234 (522)
135 PF00261 Tropomyosin: Tropomyo 90.7 30 0.00066 38.1 21.1 27 382-408 138-164 (237)
136 PF00261 Tropomyosin: Tropomyo 90.7 30 0.00066 38.1 24.1 11 483-493 225-235 (237)
137 PF13851 GAS: Growth-arrest sp 90.6 28 0.00061 37.6 19.4 21 369-389 116-136 (201)
138 KOG4593 Mitotic checkpoint pro 90.5 58 0.0012 41.1 29.7 64 426-489 246-315 (716)
139 PF14662 CCDC155: Coiled-coil 90.1 30 0.00065 37.2 19.2 21 263-283 34-54 (193)
140 PRK01156 chromosome segregatio 90.1 74 0.0016 41.6 30.2 18 342-359 225-242 (895)
141 PF10174 Cast: RIM-binding pro 90.1 70 0.0015 41.4 27.2 25 426-450 467-491 (775)
142 COG3883 Uncharacterized protei 90.0 35 0.00077 38.5 19.9 67 308-374 46-112 (265)
143 PRK06893 DNA replication initi 90.0 0.18 3.9E-06 54.9 2.3 48 539-591 11-58 (229)
144 KOG2129 Uncharacterized conser 89.6 16 0.00035 43.0 17.3 38 348-385 259-296 (552)
145 PRK14086 dnaA chromosomal repl 89.5 0.18 4E-06 62.2 2.0 51 539-591 283-333 (617)
146 TIGR01843 type_I_hlyD type I s 89.4 14 0.0003 43.2 17.5 20 431-450 253-272 (423)
147 PRK06620 hypothetical protein; 89.1 0.18 4E-06 54.4 1.5 50 539-591 11-63 (214)
148 KOG4673 Transcription factor T 89.1 72 0.0016 40.1 26.9 30 331-360 412-441 (961)
149 PF06785 UPF0242: Uncharacteri 88.8 10 0.00022 43.6 14.5 65 259-325 87-159 (401)
150 KOG1850 Myosin-like coiled-coi 88.7 51 0.0011 37.9 22.8 114 353-499 219-332 (391)
151 PRK10361 DNA recombination pro 88.6 62 0.0013 39.5 22.0 41 433-473 142-182 (475)
152 KOG0979 Structural maintenance 88.5 96 0.0021 40.7 24.8 17 967-983 946-962 (1072)
153 COG2805 PilT Tfp pilus assembl 88.5 0.21 4.6E-06 56.5 1.5 30 561-590 114-143 (353)
154 KOG1899 LAR transmembrane tyro 88.1 22 0.00049 43.8 17.7 57 262-318 108-164 (861)
155 KOG0999 Microtubule-associated 88.0 75 0.0016 39.0 22.2 26 837-862 600-625 (772)
156 PRK08084 DNA replication initi 87.8 0.28 6.2E-06 53.6 1.9 47 540-591 18-64 (235)
157 PRK12377 putative replication 87.7 0.4 8.7E-06 53.2 3.1 49 542-591 72-120 (248)
158 TIGR03007 pepcterm_ChnLen poly 87.6 75 0.0016 38.5 23.8 15 232-246 136-150 (498)
159 KOG0963 Transcription factor/C 87.3 77 0.0017 39.5 21.7 16 478-493 381-396 (629)
160 PLN03188 kinesin-12 family pro 87.2 57 0.0012 43.8 21.8 75 294-368 878-959 (1320)
161 KOG0963 Transcription factor/C 87.2 90 0.0019 39.0 27.5 161 319-489 187-349 (629)
162 COG2804 PulE Type II secretory 87.1 0.26 5.6E-06 59.2 1.2 32 560-591 246-277 (500)
163 PRK08116 hypothetical protein; 87.1 0.36 7.9E-06 54.0 2.3 51 540-591 81-133 (268)
164 PF10168 Nup88: Nuclear pore c 87.0 21 0.00045 45.7 17.7 7 107-113 342-348 (717)
165 COG4942 Membrane-bound metallo 86.9 78 0.0017 38.0 23.0 30 312-341 50-79 (420)
166 PRK14088 dnaA chromosomal repl 86.9 0.28 6.1E-06 58.6 1.4 50 539-591 100-149 (440)
167 TIGR01005 eps_transp_fam exopo 86.8 77 0.0017 40.7 23.0 29 270-298 199-227 (754)
168 KOG0980 Actin-binding protein 86.8 1.1E+02 0.0024 39.7 28.5 22 306-327 385-406 (980)
169 PF15254 CCDC14: Coiled-coil d 86.7 19 0.00042 45.4 16.5 59 418-476 456-514 (861)
170 PRK06835 DNA replication prote 86.7 0.29 6.3E-06 56.4 1.3 38 553-591 165-202 (329)
171 PRK05642 DNA replication initi 86.6 0.41 8.8E-06 52.4 2.3 49 540-591 15-64 (234)
172 PRK07952 DNA replication prote 86.5 0.51 1.1E-05 52.3 3.0 50 541-591 69-118 (244)
173 PF12325 TMF_TATA_bd: TATA ele 86.4 18 0.0004 36.1 13.4 27 434-460 92-118 (120)
174 COG5185 HEC1 Protein involved 86.0 88 0.0019 37.8 25.5 24 51-74 99-122 (622)
175 KOG0976 Rho/Rac1-interacting s 86.0 1.1E+02 0.0025 39.1 28.2 14 256-269 87-100 (1265)
176 KOG3000 Microtubule-binding pr 86.0 1.6 3.5E-05 49.5 6.6 110 29-146 14-130 (295)
177 TIGR00362 DnaA chromosomal rep 85.9 0.37 8E-06 56.8 1.6 52 538-591 104-155 (405)
178 PRK09039 hypothetical protein; 85.6 81 0.0018 36.9 20.6 13 571-583 261-273 (343)
179 PF12718 Tropomyosin_1: Tropom 85.4 47 0.001 34.1 17.6 11 384-394 86-96 (143)
180 PRK00149 dnaA chromosomal repl 85.3 0.4 8.7E-06 57.3 1.6 52 538-591 116-167 (450)
181 PF05701 WEMBL: Weak chloropla 85.0 1.1E+02 0.0024 37.9 29.2 32 420-451 277-308 (522)
182 TIGR01843 type_I_hlyD type I s 85.0 36 0.00079 39.7 17.6 7 569-575 326-332 (423)
183 PF09730 BicD: Microtubule-ass 85.0 1E+02 0.0022 39.6 21.9 26 839-864 672-697 (717)
184 PF10212 TTKRSYEDQ: Predicted 84.8 74 0.0016 39.1 19.8 45 432-476 463-507 (518)
185 PRK09087 hypothetical protein; 84.6 0.58 1.2E-05 51.1 2.3 48 539-591 16-63 (226)
186 PRK14087 dnaA chromosomal repl 84.5 0.45 9.8E-06 57.1 1.5 50 540-591 111-160 (450)
187 PF04949 Transcrip_act: Transc 84.5 37 0.0008 35.1 14.5 70 228-320 28-97 (159)
188 cd07647 F-BAR_PSTPIP The F-BAR 84.3 49 0.0011 36.4 17.1 25 350-374 114-138 (239)
189 PF09730 BicD: Microtubule-ass 84.2 86 0.0019 40.2 20.8 32 836-867 584-616 (717)
190 KOG0946 ER-Golgi vesicle-tethe 83.9 1.4E+02 0.0031 38.4 23.6 18 346-363 696-713 (970)
191 COG1484 DnaC DNA replication p 83.5 0.76 1.6E-05 51.1 2.6 49 541-591 76-124 (254)
192 COG3883 Uncharacterized protei 83.4 87 0.0019 35.5 22.9 47 314-360 38-84 (265)
193 PF10473 CENP-F_leu_zip: Leuci 83.3 58 0.0013 33.5 15.9 20 386-405 95-114 (140)
194 TIGR03420 DnaA_homol_Hda DnaA 83.3 0.76 1.7E-05 49.0 2.5 47 540-591 11-57 (226)
195 KOG1103 Predicted coiled-coil 83.3 92 0.002 36.2 18.5 27 353-379 171-197 (561)
196 cd07651 F-BAR_PombeCdc15_like 83.2 77 0.0017 34.8 20.3 23 352-374 117-139 (236)
197 COG4477 EzrA Negative regulato 83.1 97 0.0021 38.1 19.6 52 345-401 319-370 (570)
198 KOG0962 DNA repair protein RAD 83.0 1.9E+02 0.0042 39.3 27.8 15 601-615 1127-1141(1294)
199 PRK08903 DnaA regulatory inact 82.9 0.82 1.8E-05 49.2 2.5 49 539-591 13-61 (227)
200 KOG0946 ER-Golgi vesicle-tethe 82.5 1.2E+02 0.0026 39.1 20.5 49 346-395 668-716 (970)
201 PF06160 EzrA: Septation ring 82.3 1.3E+02 0.0028 37.6 21.4 35 333-367 304-338 (560)
202 KOG0046 Ca2+-binding actin-bun 82.3 4.5 9.7E-05 48.8 8.3 41 33-79 391-431 (627)
203 PF08317 Spc7: Spc7 kinetochor 82.2 1E+02 0.0023 35.6 28.5 36 226-271 50-85 (325)
204 PF09787 Golgin_A5: Golgin sub 82.2 1.4E+02 0.0029 36.9 26.3 47 350-396 275-324 (511)
205 TIGR01242 26Sp45 26S proteasom 82.0 3.3 7.2E-05 48.1 7.3 19 572-590 156-174 (364)
206 PF10168 Nup88: Nuclear pore c 82.0 51 0.0011 42.3 18.0 26 450-475 633-658 (717)
207 KOG0804 Cytoplasmic Zn-finger 82.0 28 0.00061 41.6 14.4 25 372-396 422-446 (493)
208 PF04849 HAP1_N: HAP1 N-termin 81.9 1.1E+02 0.0023 35.5 18.6 52 306-360 173-224 (306)
209 KOG0240 Kinesin (SMY1 subfamil 81.9 1.4E+02 0.0031 37.0 22.4 39 250-288 330-368 (607)
210 PRK10865 protein disaggregatio 81.8 43 0.00092 43.9 17.7 44 543-590 567-616 (857)
211 TIGR03185 DNA_S_dndD DNA sulfu 81.7 1.2E+02 0.0026 38.4 21.2 19 256-274 318-336 (650)
212 cd07671 F-BAR_PSTPIP1 The F-BA 81.6 65 0.0014 35.9 16.7 37 331-374 102-138 (242)
213 KOG0804 Cytoplasmic Zn-finger 81.5 61 0.0013 38.9 16.9 9 91-99 87-95 (493)
214 PRK03992 proteasome-activating 81.5 19 0.00042 42.5 13.4 18 572-589 165-182 (389)
215 TIGR02928 orc1/cdc6 family rep 81.3 0.94 2E-05 52.1 2.4 39 552-590 19-58 (365)
216 COG0593 DnaA ATPase involved i 81.1 0.71 1.5E-05 54.7 1.3 51 539-591 82-132 (408)
217 TIGR02680 conserved hypothetic 80.9 2.5E+02 0.0053 39.0 29.5 10 773-782 839-848 (1353)
218 PF09731 Mitofilin: Mitochondr 80.5 1.3E+02 0.0029 37.4 20.8 53 444-496 366-421 (582)
219 PF06548 Kinesin-related: Kine 80.5 1.4E+02 0.0031 36.0 20.2 28 297-324 116-143 (488)
220 PF15619 Lebercilin: Ciliary p 80.3 91 0.002 33.7 21.1 57 347-410 94-150 (194)
221 PRK06526 transposase; Provisio 80.2 0.64 1.4E-05 51.7 0.5 40 547-591 77-117 (254)
222 KOG0249 LAR-interacting protei 79.8 81 0.0018 39.9 17.7 22 381-402 166-187 (916)
223 PRK08181 transposase; Validate 79.7 1 2.3E-05 50.5 2.1 21 569-591 105-125 (269)
224 PF15294 Leu_zip: Leucine zipp 79.5 52 0.0011 37.4 15.1 81 312-392 130-215 (278)
225 PTZ00454 26S protease regulato 79.3 5.9 0.00013 47.1 8.2 51 540-590 141-197 (398)
226 PRK08727 hypothetical protein; 79.3 1.1 2.4E-05 48.9 2.1 45 540-591 15-60 (233)
227 TIGR03185 DNA_S_dndD DNA sulfu 79.3 1.5E+02 0.0032 37.6 20.9 22 724-745 536-557 (650)
228 KOG4809 Rab6 GTPase-interactin 79.0 1.7E+02 0.0037 36.1 28.0 30 257-286 246-275 (654)
229 PLN02939 transferase, transfer 78.8 1.9E+02 0.0042 38.4 21.7 17 289-305 166-182 (977)
230 PF04851 ResIII: Type III rest 78.8 0.87 1.9E-05 46.1 1.0 21 571-591 24-44 (184)
231 PRK08939 primosomal protein Dn 78.8 0.87 1.9E-05 52.0 1.1 51 541-591 124-175 (306)
232 PF09731 Mitofilin: Mitochondr 78.7 1.8E+02 0.0039 36.2 24.8 17 598-614 491-507 (582)
233 PF09789 DUF2353: Uncharacteri 78.4 1E+02 0.0022 35.9 17.2 16 477-492 193-208 (319)
234 PLN02939 transferase, transfer 78.2 2.5E+02 0.0053 37.5 24.1 22 381-402 267-288 (977)
235 TIGR02903 spore_lon_C ATP-depe 77.6 11 0.00023 47.4 10.1 27 563-589 166-192 (615)
236 PF13851 GAS: Growth-arrest sp 77.6 1.1E+02 0.0024 33.1 25.4 26 383-408 98-123 (201)
237 PF15290 Syntaphilin: Golgi-lo 77.3 59 0.0013 36.9 14.3 59 346-413 86-145 (305)
238 KOG1937 Uncharacterized conser 77.2 1.8E+02 0.0038 35.3 26.9 105 297-402 284-406 (521)
239 PRK10884 SH3 domain-containing 76.8 23 0.0005 38.5 11.1 22 383-404 137-158 (206)
240 COG1474 CDC6 Cdc6-related prot 76.8 1.5 3.2E-05 51.4 2.2 30 560-589 29-59 (366)
241 PRK00411 cdc6 cell division co 76.6 1.7 3.8E-05 50.5 2.8 37 554-590 36-73 (394)
242 COG2433 Uncharacterized conser 76.4 26 0.00057 43.3 12.3 24 55-78 57-80 (652)
243 PRK12704 phosphodiesterase; Pr 76.4 2.1E+02 0.0044 35.6 23.6 20 544-564 276-295 (520)
244 COG5069 SAC6 Ca2+-binding acti 76.2 2.5 5.4E-05 50.4 3.7 73 32-106 127-209 (612)
245 PF06294 DUF1042: Domain of Un 76.1 2.1 4.5E-05 44.5 2.8 86 35-128 1-99 (158)
246 PF04111 APG6: Autophagy prote 75.4 30 0.00065 39.9 12.2 37 326-362 55-91 (314)
247 cd00046 DEXDc DEAD-like helica 75.4 0.93 2E-05 42.7 0.1 17 575-591 3-19 (144)
248 cd00009 AAA The AAA+ (ATPases 74.9 1.6 3.4E-05 41.6 1.6 20 571-590 18-37 (151)
249 PRK12704 phosphodiesterase; Pr 74.7 1.9E+02 0.004 35.9 19.4 13 482-494 191-203 (520)
250 PF09744 Jnk-SapK_ap_N: JNK_SA 74.6 1.2E+02 0.0025 31.9 18.0 11 254-264 23-33 (158)
251 COG2433 Uncharacterized conser 74.5 34 0.00074 42.4 12.6 38 292-329 421-458 (652)
252 KOG0964 Structural maintenance 74.1 3E+02 0.0065 36.4 26.6 10 754-763 1103-1112(1200)
253 KOG1853 LIS1-interacting prote 74.1 1.6E+02 0.0034 33.1 19.1 67 337-407 54-120 (333)
254 TIGR02538 type_IV_pilB type IV 73.5 1.4 3E-05 54.5 0.9 30 562-591 306-335 (564)
255 KOG3631 Alpha-parvin and relat 73.3 6.3 0.00014 44.0 5.7 98 31-132 91-196 (365)
256 PF04156 IncA: IncA protein; 73.3 1.2E+02 0.0026 31.9 15.3 14 350-363 103-116 (191)
257 PF10267 Tmemb_cc2: Predicted 73.2 1E+02 0.0023 36.8 16.0 29 419-447 264-292 (395)
258 PF13401 AAA_22: AAA domain; P 73.1 0.96 2.1E-05 43.7 -0.5 19 572-590 4-22 (131)
259 TIGR02533 type_II_gspE general 73.1 1.6 3.5E-05 53.0 1.3 30 562-591 232-261 (486)
260 PF12004 DUF3498: Domain of un 73.0 1.1 2.4E-05 54.1 0.0 58 343-404 370-427 (495)
261 PRK10436 hypothetical protein; 73.0 1.5 3.3E-05 52.9 1.1 30 562-591 208-237 (462)
262 PF10212 TTKRSYEDQ: Predicted 72.5 47 0.001 40.7 13.1 30 345-374 465-494 (518)
263 PRK12422 chromosomal replicati 72.1 2.1 4.6E-05 51.4 2.0 52 538-591 105-160 (445)
264 PRK06921 hypothetical protein; 71.9 2.8 6.2E-05 46.9 2.8 38 554-591 96-136 (266)
265 TIGR03319 YmdA_YtgF conserved 71.9 2.4E+02 0.0052 35.0 19.3 13 482-494 185-197 (514)
266 cd07672 F-BAR_PSTPIP2 The F-BA 71.9 1.7E+02 0.0037 32.6 18.5 35 333-374 105-139 (240)
267 PF07798 DUF1640: Protein of u 71.9 1.4E+02 0.003 31.6 18.8 15 231-245 23-37 (177)
268 PF13870 DUF4201: Domain of un 71.8 1.4E+02 0.0029 31.4 20.9 87 272-364 6-92 (177)
269 PF00270 DEAD: DEAD/DEAH box h 71.4 1.9 4.1E-05 43.3 1.2 27 563-591 7-33 (169)
270 PTZ00112 origin recognition co 71.0 1.5 3.2E-05 56.3 0.4 32 559-590 766-799 (1164)
271 TIGR01420 pilT_fam pilus retra 70.9 1.9 4E-05 50.0 1.1 29 563-591 113-141 (343)
272 smart00382 AAA ATPases associa 70.8 1.4 2.9E-05 41.5 0.0 19 573-591 3-21 (148)
273 PF13245 AAA_19: Part of AAA d 70.8 1.7 3.7E-05 39.5 0.7 27 564-591 3-29 (76)
274 PF12846 AAA_10: AAA-like doma 70.6 1.4 3E-05 48.4 -0.0 19 572-590 1-19 (304)
275 PRK12402 replication factor C 70.3 1.8 4E-05 48.9 0.9 44 541-591 12-55 (337)
276 PF01935 DUF87: Domain of unkn 70.3 1.5 3.2E-05 47.3 0.1 17 574-590 25-41 (229)
277 PF05483 SCP-1: Synaptonemal c 70.3 3.1E+02 0.0067 35.0 28.7 75 226-300 150-240 (786)
278 TIGR03319 YmdA_YtgF conserved 70.2 2.8E+02 0.0061 34.4 23.8 10 468-477 188-197 (514)
279 PF07058 Myosin_HC-like: Myosi 70.1 75 0.0016 36.5 13.1 46 275-320 3-48 (351)
280 cd01131 PilT Pilus retraction 70.1 1.5 3.2E-05 46.7 0.1 19 572-590 1-19 (198)
281 PF15272 BBP1_C: Spindle pole 69.7 1.6E+02 0.0035 32.0 15.0 120 261-394 9-148 (196)
282 PF06008 Laminin_I: Laminin Do 69.7 1.9E+02 0.0041 32.3 21.9 18 252-269 19-36 (264)
283 PF15290 Syntaphilin: Golgi-lo 69.6 73 0.0016 36.2 12.7 51 431-492 117-168 (305)
284 TIGR01005 eps_transp_fam exopo 69.5 3.3E+02 0.0072 35.0 21.4 16 251-266 165-180 (754)
285 PF10186 Atg14: UV radiation r 69.3 1.9E+02 0.0042 32.1 18.7 10 482-491 146-155 (302)
286 PF06818 Fez1: Fez1; InterPro 69.3 1.8E+02 0.0039 31.8 17.6 22 343-364 25-46 (202)
287 TIGR02525 plasmid_TraJ plasmid 68.9 2.2 4.7E-05 50.2 1.1 28 563-591 141-168 (372)
288 PF08581 Tup_N: Tup N-terminal 68.7 79 0.0017 29.5 10.9 47 419-465 27-73 (79)
289 PF05911 DUF869: Plant protein 68.5 3.7E+02 0.0079 35.1 24.2 51 326-376 125-175 (769)
290 KOG0980 Actin-binding protein 68.4 3.8E+02 0.0082 35.2 28.6 11 812-822 881-891 (980)
291 TIGR03017 EpsF chain length de 68.3 2.6E+02 0.0057 33.3 26.0 29 270-298 176-204 (444)
292 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.2 1.4E+02 0.003 30.1 17.3 8 391-398 65-72 (132)
293 TIGR02524 dot_icm_DotB Dot/Icm 67.9 2.4 5.2E-05 49.6 1.2 21 571-591 133-153 (358)
294 PF15066 CAGE1: Cancer-associa 67.9 2.4E+02 0.0053 34.3 17.1 146 253-402 358-527 (527)
295 PF04849 HAP1_N: HAP1 N-termin 67.2 2.5E+02 0.0053 32.6 17.7 25 381-405 163-187 (306)
296 PF01576 Myosin_tail_1: Myosin 66.9 1.8 4E-05 56.0 0.0 58 348-405 291-348 (859)
297 KOG1265 Phospholipase C [Lipid 66.8 64 0.0014 41.7 12.8 150 220-400 1030-1179(1189)
298 cd01129 PulE-GspE PulE/GspE Th 66.8 2.7 5.9E-05 47.0 1.3 30 562-591 70-99 (264)
299 PF00437 T2SE: Type II/IV secr 66.6 2.1 4.6E-05 47.4 0.4 29 561-590 117-145 (270)
300 PF04156 IncA: IncA protein; 66.4 1.7E+02 0.0037 30.8 14.7 15 347-361 79-93 (191)
301 KOG0999 Microtubule-associated 66.3 3.3E+02 0.0072 33.8 24.1 21 273-293 58-78 (772)
302 TIGR03015 pepcterm_ATPase puta 66.0 3.6 7.7E-05 45.1 2.0 24 567-590 38-61 (269)
303 KOG0018 Structural maintenance 65.9 4.5E+02 0.0098 35.2 24.8 244 240-487 232-493 (1141)
304 PF13604 AAA_30: AAA domain; P 65.5 2.8 6E-05 44.7 1.0 29 562-590 8-36 (196)
305 PF12252 SidE: Dot/Icm substra 65.1 4.7E+02 0.01 35.1 23.5 76 292-374 1109-1186(1439)
306 KOG0979 Structural maintenance 65.0 4.6E+02 0.0099 35.0 26.1 6 74-79 17-22 (1072)
307 TIGR02680 conserved hypothetic 64.9 5.5E+02 0.012 35.8 26.8 11 262-272 743-753 (1353)
308 KOG0517 Beta-spectrin [Cytoske 64.8 6E+02 0.013 36.2 34.0 92 17-112 30-131 (2473)
309 PRK10884 SH3 domain-containing 63.5 71 0.0015 34.9 11.2 9 351-359 141-149 (206)
310 PF01637 Arch_ATPase: Archaeal 63.4 2.4 5.2E-05 44.5 0.1 30 561-590 9-38 (234)
311 PF00448 SRP54: SRP54-type pro 63.4 2.2 4.7E-05 45.7 -0.3 18 574-591 3-20 (196)
312 PF05673 DUF815: Protein of un 63.3 2.9 6.3E-05 46.5 0.7 130 541-706 24-155 (249)
313 KOG0982 Centrosomal protein Nu 63.2 3.4E+02 0.0073 32.8 20.1 9 485-493 408-416 (502)
314 PF13191 AAA_16: AAA ATPase do 63.2 2 4.4E-05 43.8 -0.5 22 568-589 20-41 (185)
315 KOG4403 Cell surface glycoprot 63.2 1.9E+02 0.004 34.8 14.9 21 474-494 408-428 (575)
316 PF09755 DUF2046: Uncharacteri 63.1 2.9E+02 0.0064 32.1 25.8 9 481-489 193-201 (310)
317 PF04012 PspA_IM30: PspA/IM30 62.8 2.3E+02 0.0049 30.7 19.2 33 232-269 6-38 (221)
318 KOG1103 Predicted coiled-coil 62.8 3.1E+02 0.0066 32.2 17.0 23 380-402 240-262 (561)
319 PRK13894 conjugal transfer ATP 62.8 3.4 7.4E-05 47.6 1.2 29 561-590 138-166 (319)
320 KOG0978 E3 ubiquitin ligase in 62.7 4.4E+02 0.0095 33.9 31.0 31 422-452 550-580 (698)
321 TIGR03346 chaperone_ClpB ATP-d 62.5 3.6E+02 0.0077 35.6 19.3 38 553-590 570-613 (852)
322 PF13479 AAA_24: AAA domain 62.3 3.1 6.7E-05 44.8 0.7 20 572-591 3-22 (213)
323 PF06160 EzrA: Septation ring 62.3 4E+02 0.0087 33.3 28.2 22 433-454 315-336 (560)
324 PF14988 DUF4515: Domain of un 62.2 2.4E+02 0.0052 30.8 23.3 86 289-392 43-128 (206)
325 PF09728 Taxilin: Myosin-like 61.8 3.1E+02 0.0066 31.8 23.5 31 385-415 237-267 (309)
326 PF13207 AAA_17: AAA domain; P 61.7 3.1 6.7E-05 39.8 0.5 16 574-589 1-16 (121)
327 TIGR02782 TrbB_P P-type conjug 61.5 3.7 7.9E-05 46.9 1.1 29 561-590 122-150 (299)
328 TIGR01000 bacteriocin_acc bact 61.5 3.2E+02 0.0068 33.1 17.5 17 563-579 368-384 (457)
329 PF01695 IstB_IS21: IstB-like 61.1 4.4 9.6E-05 42.6 1.6 19 573-591 48-66 (178)
330 COG5008 PilU Tfp pilus assembl 60.7 5.2 0.00011 45.0 2.0 30 561-590 116-145 (375)
331 PF15450 DUF4631: Domain of un 60.3 4.1E+02 0.009 32.9 26.6 19 255-273 194-212 (531)
332 PRK00106 hypothetical protein; 59.7 4.4E+02 0.0095 33.0 22.9 6 554-559 300-305 (535)
333 smart00806 AIP3 Actin interact 59.6 3E+02 0.0066 33.2 16.1 20 350-369 156-175 (426)
334 PF09789 DUF2353: Uncharacteri 59.6 3.4E+02 0.0074 31.7 20.4 67 301-367 73-144 (319)
335 TIGR03545 conserved hypothetic 59.0 66 0.0014 40.1 11.2 30 777-806 472-501 (555)
336 PF05266 DUF724: Protein of un 59.0 2.6E+02 0.0057 30.2 15.4 19 344-362 154-172 (190)
337 PF06548 Kinesin-related: Kine 58.9 4.1E+02 0.0089 32.4 25.2 19 341-359 221-239 (488)
338 KOG4460 Nuclear pore complex, 58.4 3.6E+02 0.0078 33.6 16.4 28 449-476 655-682 (741)
339 TIGR03007 pepcterm_ChnLen poly 58.3 4.1E+02 0.009 32.2 19.7 15 252-266 133-147 (498)
340 TIGR00631 uvrb excinuclease AB 58.2 11 0.00024 47.6 4.6 92 541-637 2-97 (655)
341 COG1842 PspA Phage shock prote 58.2 3E+02 0.0065 30.5 16.4 130 358-493 4-133 (225)
342 PF02562 PhoH: PhoH-like prote 58.1 6.4 0.00014 42.7 2.2 27 563-591 12-38 (205)
343 KOG0962 DNA repair protein RAD 58.0 6.7E+02 0.014 34.5 26.3 18 784-803 1200-1217(1294)
344 PF00004 AAA: ATPase family as 57.8 3.4 7.4E-05 39.6 0.0 16 575-590 1-16 (132)
345 PRK13833 conjugal transfer pro 57.6 4.6 9.9E-05 46.7 1.0 28 562-590 135-162 (323)
346 PF05557 MAD: Mitotic checkpoi 57.5 1.7E+02 0.0037 37.6 14.9 24 431-454 606-629 (722)
347 COG4962 CpaF Flp pilus assembl 57.1 5 0.00011 46.6 1.2 30 560-590 162-191 (355)
348 KOG4603 TBP-1 interacting prot 57.0 2.1E+02 0.0046 30.5 12.6 21 471-491 160-180 (201)
349 PF07798 DUF1640: Protein of u 56.9 2.6E+02 0.0057 29.5 20.1 17 433-449 140-156 (177)
350 PRK00106 hypothetical protein; 56.8 4.9E+02 0.011 32.6 22.4 13 482-494 206-218 (535)
351 PF04111 APG6: Autophagy prote 56.7 1.1E+02 0.0023 35.5 11.8 50 308-357 44-93 (314)
352 PRK11281 hypothetical protein; 56.7 6.8E+02 0.015 34.2 21.3 196 288-484 38-255 (1113)
353 PRK12723 flagellar biosynthesi 56.6 7.3 0.00016 46.2 2.5 20 572-591 174-193 (388)
354 smart00487 DEXDc DEAD-like hel 56.6 6.1 0.00013 39.7 1.6 28 563-591 16-43 (201)
355 PRK09841 cryptic autophosphory 56.6 2.2E+02 0.0048 36.6 15.8 20 572-591 532-551 (726)
356 cd07658 F-BAR_NOSTRIN The F-BA 56.4 3.2E+02 0.0069 30.3 17.9 26 253-279 58-83 (239)
357 KOG4677 Golgi integral membran 56.2 4.5E+02 0.0097 32.0 24.2 29 264-292 216-244 (554)
358 TIGR00635 ruvB Holliday juncti 55.9 6.5 0.00014 44.1 1.9 40 551-590 7-48 (305)
359 cd01130 VirB11-like_ATPase Typ 55.9 5.8 0.00012 41.7 1.4 30 560-590 14-43 (186)
360 TIGR03499 FlhF flagellar biosy 55.8 7.8 0.00017 43.8 2.5 18 574-591 196-213 (282)
361 COG0419 SbcC ATPase involved i 55.5 6.3E+02 0.014 33.5 29.4 13 484-496 740-752 (908)
362 PF03904 DUF334: Domain of unk 55.5 1.9E+02 0.0042 32.0 12.6 97 306-404 42-150 (230)
363 PF11559 ADIP: Afadin- and alp 55.5 2.4E+02 0.0053 28.7 16.5 26 337-362 61-86 (151)
364 PF05557 MAD: Mitotic checkpoi 55.4 3.9 8.5E-05 52.1 0.0 40 839-878 603-643 (722)
365 PF13086 AAA_11: AAA domain; P 55.2 5 0.00011 42.1 0.8 28 563-591 9-36 (236)
366 COG1201 Lhr Lhr-like helicases 55.1 8.9 0.00019 49.3 3.0 51 780-836 335-391 (814)
367 PRK09183 transposase/IS protei 54.9 5.9 0.00013 44.2 1.3 21 569-591 101-121 (259)
368 PF10267 Tmemb_cc2: Predicted 54.9 2.1E+02 0.0046 34.3 14.0 21 385-405 298-318 (395)
369 PF07106 TBPIP: Tat binding pr 54.7 1.6E+02 0.0035 30.7 11.8 21 467-487 149-169 (169)
370 PF00063 Myosin_head: Myosin h 54.7 5.9 0.00013 50.2 1.4 36 554-589 66-102 (689)
371 KOG1760 Molecular chaperone Pr 54.0 1.3E+02 0.0029 30.3 10.1 70 336-405 24-115 (131)
372 PRK11519 tyrosine kinase; Prov 54.0 1.7E+02 0.0036 37.7 14.1 21 571-591 526-546 (719)
373 COG1223 Predicted ATPase (AAA+ 53.7 7.8 0.00017 43.6 2.0 47 572-618 151-210 (368)
374 KOG2412 Nuclear-export-signal 53.5 5.4E+02 0.012 32.1 18.5 16 483-498 358-373 (591)
375 KOG0727 26S proteasome regulat 53.1 87 0.0019 35.4 9.7 81 541-621 152-251 (408)
376 PRK10929 putative mechanosensi 52.9 7.7E+02 0.017 33.7 26.1 21 251-272 142-162 (1109)
377 PF06309 Torsin: Torsin; Inte 52.6 5.5 0.00012 40.1 0.5 16 574-589 55-70 (127)
378 PRK00409 recombination and DNA 52.3 2.6E+02 0.0056 36.5 15.4 20 117-136 271-290 (782)
379 KOG4593 Mitotic checkpoint pro 52.2 6.2E+02 0.014 32.5 27.2 17 226-242 57-73 (716)
380 cd00268 DEADc DEAD-box helicas 52.2 8.1 0.00017 40.4 1.7 25 563-589 29-53 (203)
381 PF10498 IFT57: Intra-flagella 52.1 3.6E+02 0.0077 32.0 15.2 112 285-407 212-323 (359)
382 PF11802 CENP-K: Centromere-as 52.1 4.1E+02 0.0089 30.3 20.3 44 287-330 31-75 (268)
383 KOG3091 Nuclear pore complex, 51.9 3E+02 0.0064 33.8 14.5 17 263-279 336-352 (508)
384 PTZ00424 helicase 45; Provisio 51.8 7.4 0.00016 45.3 1.5 27 562-590 57-83 (401)
385 PRK13342 recombination factor 51.8 7.6 0.00017 46.1 1.6 39 552-590 16-54 (413)
386 PF08581 Tup_N: Tup N-terminal 51.7 1.8E+02 0.004 27.1 10.2 31 255-293 2-32 (79)
387 PF00580 UvrD-helicase: UvrD/R 51.7 5.2 0.00011 44.2 0.2 21 571-591 12-32 (315)
388 PF00804 Syntaxin: Syntaxin; 51.4 1.6E+02 0.0035 27.0 10.3 66 341-407 6-71 (103)
389 PF05970 PIF1: PIF1-like helic 51.0 8 0.00017 45.2 1.6 37 550-589 3-39 (364)
390 PF01580 FtsK_SpoIIIE: FtsK/Sp 50.9 4.4 9.6E-05 42.9 -0.4 18 574-591 40-57 (205)
391 KOG4403 Cell surface glycoprot 50.9 5.3E+02 0.011 31.2 17.4 6 250-255 149-154 (575)
392 PRK11776 ATP-dependent RNA hel 50.7 8.1 0.00018 46.3 1.7 26 562-589 33-58 (460)
393 PF00910 RNA_helicase: RNA hel 50.7 4.3 9.3E-05 38.9 -0.6 16 575-590 1-16 (107)
394 PF03215 Rad17: Rad17 cell cyc 50.4 7.8 0.00017 47.6 1.5 32 559-590 30-63 (519)
395 PF09738 DUF2051: Double stran 50.4 2.1E+02 0.0046 33.1 12.7 16 348-363 111-126 (302)
396 PF13671 AAA_33: AAA domain; P 50.3 5.9 0.00013 38.9 0.3 16 574-589 1-16 (143)
397 PF11932 DUF3450: Protein of u 50.1 4E+02 0.0086 29.6 16.3 14 486-499 158-171 (251)
398 PF03962 Mnd1: Mnd1 family; I 50.1 2.1E+02 0.0045 30.8 11.9 93 378-475 62-154 (188)
399 PRK13900 type IV secretion sys 50.1 7.5 0.00016 45.1 1.2 29 561-590 150-178 (332)
400 KOG4572 Predicted DNA-binding 50.0 7.2E+02 0.016 32.5 22.6 41 34-79 509-552 (1424)
401 KOG0247 Kinesin-like protein [ 49.9 3.4E+02 0.0075 34.9 15.0 21 255-275 491-511 (809)
402 PRK13851 type IV secretion sys 49.8 5.4 0.00012 46.5 0.0 30 561-591 152-181 (344)
403 KOG2856 Adaptor protein PACSIN 49.8 2.9E+02 0.0062 32.8 13.4 30 433-462 179-208 (472)
404 PF15450 DUF4631: Domain of un 49.8 6E+02 0.013 31.6 25.0 80 325-404 341-431 (531)
405 KOG0249 LAR-interacting protei 49.6 7E+02 0.015 32.2 20.7 23 470-492 302-324 (916)
406 KOG0989 Replication factor C, 49.5 11 0.00024 43.3 2.4 42 549-590 32-75 (346)
407 PF14662 CCDC155: Coiled-coil 48.7 3.9E+02 0.0084 29.1 22.0 8 308-315 44-51 (193)
408 PF05496 RuvB_N: Holliday junc 48.7 16 0.00034 40.4 3.3 42 547-588 23-66 (233)
409 PF13238 AAA_18: AAA domain; P 48.5 6.6 0.00014 37.4 0.3 15 575-589 1-15 (129)
410 KOG0335 ATP-dependent RNA heli 48.5 5.7 0.00012 47.9 -0.1 66 564-635 105-189 (482)
411 KOG0579 Ste20-like serine/thre 47.2 7.4E+02 0.016 31.9 27.4 16 54-69 504-519 (1187)
412 cd07655 F-BAR_PACSIN The F-BAR 47.1 4.6E+02 0.0099 29.4 18.6 24 351-374 128-151 (258)
413 KOG0978 E3 ubiquitin ligase in 47.1 7.6E+02 0.016 31.9 24.3 29 334-362 481-509 (698)
414 PRK11192 ATP-dependent RNA hel 47.0 9.8 0.00021 45.1 1.6 26 562-589 30-55 (434)
415 PRK13764 ATPase; Provisional 46.9 8.2 0.00018 48.2 0.9 20 572-591 257-276 (602)
416 cd01383 MYSc_type_VIII Myosin 46.6 14 0.0003 46.9 2.9 36 554-589 73-109 (677)
417 PRK04195 replication factor C 46.4 13 0.00027 45.2 2.4 35 556-590 22-57 (482)
418 PF07724 AAA_2: AAA domain (Cd 46.3 7.4 0.00016 40.8 0.3 17 573-589 4-20 (171)
419 PTZ00361 26 proteosome regulat 46.1 18 0.0004 43.5 3.7 95 496-590 127-235 (438)
420 PRK06547 hypothetical protein; 45.9 14 0.00031 38.7 2.4 27 563-589 6-32 (172)
421 TIGR03545 conserved hypothetic 45.7 1.8E+02 0.0039 36.4 12.1 18 540-557 356-373 (555)
422 TIGR03017 EpsF chain length de 45.7 5.9E+02 0.013 30.3 23.9 23 437-459 341-363 (444)
423 cd01385 MYSc_type_IX Myosin mo 45.5 14 0.00031 47.0 2.7 36 554-589 75-111 (692)
424 TIGR03752 conj_TIGR03752 integ 45.3 1.6E+02 0.0034 36.0 11.0 12 539-550 194-205 (472)
425 PHA00729 NTP-binding motif con 45.1 14 0.00031 40.7 2.3 30 562-591 7-36 (226)
426 cd01381 MYSc_type_VII Myosin m 45.1 16 0.00034 46.5 2.9 36 554-589 67-103 (671)
427 PF10211 Ax_dynein_light: Axon 44.9 4.3E+02 0.0092 28.4 15.4 9 258-266 85-93 (189)
428 cd01384 MYSc_type_XI Myosin mo 44.9 15 0.00033 46.6 2.8 36 554-589 69-105 (674)
429 KOG0972 Huntingtin interacting 44.8 3.9E+02 0.0084 30.8 13.1 47 283-329 217-263 (384)
430 cd00124 MYSc Myosin motor doma 44.5 14 0.00031 46.8 2.5 36 554-589 67-103 (679)
431 PRK04837 ATP-dependent RNA hel 44.4 11 0.00024 44.6 1.5 25 563-589 38-62 (423)
432 smart00242 MYSc Myosin. Large 44.1 15 0.00034 46.5 2.7 36 554-589 73-109 (677)
433 PRK11448 hsdR type I restricti 44.1 12 0.00026 50.1 1.8 41 557-608 419-459 (1123)
434 COG4717 Uncharacterized conser 44.0 9E+02 0.02 32.0 24.7 41 433-477 813-853 (984)
435 TIGR00763 lon ATP-dependent pr 43.9 64 0.0014 41.8 8.2 16 574-589 349-364 (775)
436 cd01378 MYSc_type_I Myosin mot 43.9 16 0.00036 46.3 2.9 36 554-589 67-103 (674)
437 PRK10590 ATP-dependent RNA hel 43.7 12 0.00027 44.8 1.8 26 562-589 30-55 (456)
438 TIGR00348 hsdR type I site-spe 43.7 13 0.00028 47.1 2.0 32 559-591 246-282 (667)
439 PF05622 HOOK: HOOK protein; 43.7 7.7 0.00017 49.4 0.0 14 31-44 75-88 (713)
440 PHA02544 44 clamp loader, smal 43.5 11 0.00024 42.5 1.3 23 569-591 39-62 (316)
441 KOG0239 Kinesin (KAR3 subfamil 43.5 5.9E+02 0.013 32.7 16.2 28 57-84 22-49 (670)
442 PRK10361 DNA recombination pro 43.4 7.2E+02 0.016 30.7 21.4 19 349-367 81-99 (475)
443 PF06414 Zeta_toxin: Zeta toxi 43.3 8.7 0.00019 40.7 0.3 21 570-590 13-33 (199)
444 PRK14722 flhF flagellar biosyn 43.3 8.3 0.00018 45.5 0.2 19 573-591 138-156 (374)
445 KOG3850 Predicted membrane pro 43.2 6.6E+02 0.014 30.1 16.8 42 316-360 262-303 (455)
446 cd01387 MYSc_type_XV Myosin mo 43.0 17 0.00038 46.1 3.0 36 554-589 68-104 (677)
447 PF10146 zf-C4H2: Zinc finger- 42.8 5.2E+02 0.011 28.8 13.9 13 434-446 91-103 (230)
448 KOG2072 Translation initiation 42.8 9.2E+02 0.02 31.7 23.4 25 319-343 675-699 (988)
449 PRK00409 recombination and DNA 42.8 4.4E+02 0.0095 34.5 15.3 41 554-612 715-756 (782)
450 PF07058 Myosin_HC-like: Myosi 42.7 1.3E+02 0.0027 34.8 9.1 23 477-499 112-134 (351)
451 PRK10536 hypothetical protein; 42.4 14 0.0003 41.7 1.7 42 541-591 52-93 (262)
452 TIGR02881 spore_V_K stage V sp 42.4 8.8 0.00019 42.5 0.2 19 573-591 43-61 (261)
453 PF09321 DUF1978: Domain of un 42.4 4.9E+02 0.011 29.2 13.4 45 261-311 94-138 (241)
454 PF01576 Myosin_tail_1: Myosin 42.2 8.4 0.00018 50.2 0.0 27 381-407 457-483 (859)
455 PF07728 AAA_5: AAA domain (dy 42.1 9.5 0.00021 37.6 0.4 16 575-590 2-17 (139)
456 PF09738 DUF2051: Double stran 41.9 4.4E+02 0.0096 30.5 13.6 17 351-367 79-95 (302)
457 cd01377 MYSc_type_II Myosin mo 41.8 17 0.00037 46.3 2.6 36 554-589 72-108 (693)
458 COG1222 RPT1 ATP-dependent 26S 41.6 14 0.0003 43.3 1.7 79 542-621 149-247 (406)
459 KOG0577 Serine/threonine prote 41.6 8.7E+02 0.019 31.1 18.8 137 352-490 483-639 (948)
460 PF10211 Ax_dynein_light: Axon 41.4 4.8E+02 0.01 28.0 18.7 19 255-273 60-78 (189)
461 cd09237 V_ScBro1_like Protein- 41.4 6.4E+02 0.014 29.5 23.8 80 415-494 259-343 (356)
462 PF15233 SYCE1: Synaptonemal c 41.2 4.1E+02 0.0089 27.2 12.8 20 340-359 39-58 (134)
463 PRK10869 recombination and rep 41.1 8.2E+02 0.018 30.6 26.8 22 596-617 459-480 (553)
464 cd01380 MYSc_type_V Myosin mot 41.1 18 0.00039 46.0 2.7 35 555-589 68-103 (691)
465 cd01382 MYSc_type_VI Myosin mo 41.0 18 0.00039 46.3 2.6 35 555-589 73-108 (717)
466 TIGR01069 mutS2 MutS2 family p 40.8 1.6E+02 0.0035 38.2 11.0 19 117-135 266-284 (771)
467 PRK11889 flhF flagellar biosyn 40.6 17 0.00037 43.5 2.1 18 573-590 242-259 (436)
468 TIGR01000 bacteriocin_acc bact 40.5 7.4E+02 0.016 29.9 19.5 6 623-628 412-417 (457)
469 PRK00080 ruvB Holliday junctio 40.3 16 0.00034 41.9 1.8 39 552-590 29-69 (328)
470 PF02841 GBP_C: Guanylate-bind 40.2 6.1E+02 0.013 28.9 21.9 196 232-451 101-297 (297)
471 PF08614 ATG16: Autophagy prot 40.1 4.2E+02 0.0091 28.3 12.4 12 266-277 72-83 (194)
472 PF04048 Sec8_exocyst: Sec8 ex 40.0 4.2E+02 0.0091 27.0 12.7 72 410-493 62-133 (142)
473 KOG1853 LIS1-interacting prote 39.9 6E+02 0.013 28.8 20.5 6 576-581 273-278 (333)
474 COG1219 ClpX ATP-dependent pro 39.9 12 0.00026 43.3 0.7 17 572-588 97-113 (408)
475 PLN03229 acetyl-coenzyme A car 39.8 9.8E+02 0.021 31.2 20.5 189 248-449 501-730 (762)
476 PRK00771 signal recognition pa 39.7 25 0.00053 42.5 3.4 20 572-591 95-114 (437)
477 KOG2991 Splicing regulator [RN 39.4 6.2E+02 0.013 28.7 20.0 23 384-406 235-257 (330)
478 COG4026 Uncharacterized protei 39.1 4.6E+02 0.0099 29.2 12.2 21 383-403 182-202 (290)
479 PF10234 Cluap1: Clusterin-ass 39.0 6.4E+02 0.014 28.8 17.2 32 101-132 2-34 (267)
480 KOG0163 Myosin class VI heavy 39.0 9.1E+02 0.02 31.5 16.1 141 263-403 852-1005(1259)
481 KOG0923 mRNA splicing factor A 38.9 60 0.0013 40.9 6.3 18 572-589 280-297 (902)
482 PF05529 Bap31: B-cell recepto 38.8 1.3E+02 0.0028 32.0 8.3 9 277-285 98-106 (192)
483 PF05700 BCAS2: Breast carcino 38.6 5.7E+02 0.012 28.1 15.6 24 382-405 140-163 (221)
484 PF12775 AAA_7: P-loop contain 38.3 13 0.00029 41.8 0.8 30 561-591 23-52 (272)
485 TIGR00614 recQ_fam ATP-depende 38.3 18 0.00039 43.7 2.0 26 562-589 18-43 (470)
486 PF08826 DMPK_coil: DMPK coile 38.1 2.5E+02 0.0054 25.0 8.4 21 384-404 38-58 (61)
487 COG5283 Phage-related tail pro 38.1 1.2E+03 0.027 31.8 18.7 154 335-493 22-186 (1213)
488 PF10481 CENP-F_N: Cenp-F N-te 38.0 6.6E+02 0.014 28.8 13.5 28 336-363 26-53 (307)
489 PRK13341 recombination factor 37.8 17 0.00037 46.5 1.8 46 542-591 26-71 (725)
490 PRK00440 rfc replication facto 37.8 13 0.00029 41.6 0.7 22 569-590 35-56 (319)
491 PF14942 Muted: Organelle biog 37.7 4.9E+02 0.011 27.0 15.2 14 254-267 18-31 (145)
492 PF03915 AIP3: Actin interacti 37.6 7.5E+02 0.016 30.1 15.1 33 326-358 204-236 (424)
493 PLN03025 replication factor C 37.5 16 0.00035 41.8 1.3 18 574-591 36-53 (319)
494 PRK01297 ATP-dependent RNA hel 37.5 16 0.00035 44.0 1.4 27 562-590 116-142 (475)
495 COG3264 Small-conductance mech 37.5 6.7E+02 0.014 33.0 15.2 173 282-489 11-187 (835)
496 COG0497 RecN ATPase involved i 37.4 9.5E+02 0.021 30.3 17.0 147 228-394 239-387 (557)
497 smart00503 SynN Syntaxin N-ter 37.3 3.7E+02 0.008 25.6 12.8 108 336-458 2-116 (117)
498 PF06705 SF-assemblin: SF-asse 37.2 6.2E+02 0.013 28.1 25.5 208 268-496 5-213 (247)
499 PF04912 Dynamitin: Dynamitin 37.2 7.8E+02 0.017 29.2 17.9 157 263-444 211-388 (388)
500 KOG2373 Predicted mitochondria 37.1 28 0.00061 40.7 3.1 27 562-589 261-290 (514)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.7e-97 Score=888.49 Aligned_cols=594 Identities=37% Similarity=0.505 Sum_probs=509.2
Q ss_pred CCCCcchHHHHHHHHHhHhhhhcCCCCchHHHHHHhHHHHHHHHHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhcc
Q 001550 225 DNASTKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVG 304 (1055)
Q Consensus 225 ~~~~~~~l~~~~~~~l~~~~~~~~~~~p~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~ 304 (1055)
.+.+...+..+...+++...+++...+.......++....++..+++.+...+.+....++..++.+.+.+..+.+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~ 150 (670)
T KOG0239|consen 71 SNQPGGLLARLFKELIDLANSDKTSNVVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQE 150 (670)
T ss_pred hcCcchhHHHhhhhcccccccCCCchhHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhh
Confidence 36788788888888888888888877777778899999999999999999999999999999999999999999998877
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 305 TTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQ 384 (1055)
Q Consensus 305 ~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le 384 (1055)
+........+. .-....+ .+....++......++..+.++|+..+..++..+.+++. ....+..|+
T Consensus 151 ~~~~~~~~~~~------------~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~-~~~~~~~l~ 216 (670)
T KOG0239|consen 151 NRGLYLDLSKV------------TPENSLS-LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS-AQEERRVLA 216 (670)
T ss_pred hcccccccccc------------chhhhHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHH
Confidence 76543332211 0000011 233345566667788999999999999999998888877 233344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhh
Q 001550 385 KKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLN 464 (1055)
Q Consensus 385 ~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~ 464 (1055)
..+. .+...+..++.++.......+. ++..+..+++|+.....++.++....+.+.+.+..++..
T Consensus 217 ~~~~----~~~~~~~~~~~l~~~~~~~~~~-----------i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 217 DSLG----NYADLRRNIKPLEGLESTIKKK-----------IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred HHhh----hhhhHHHhhhhhhhhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 3334555555555544333322 455667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHhhhhhhhhhhccCCEEEEeecCCCCCcccCC-CccEEEeCCCCeEEEeCCCCCCCCCcee
Q 001550 465 LKRLIDAAEKYHVIL---AENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKK-QTTIEYIGENGELVVSNPLKQGKDNHRL 540 (1055)
Q Consensus 465 l~~l~~~~~~y~~~l---~erRkL~N~vqelKGnIRV~~RVRP~~~~E~~~-~~~v~~~~~~~~~vi~~p~~~~~~~~k~ 540 (1055)
+..|.+....|+... .+||+|||+|+||||||||||||||+++++... ...+...++.+++.+..|....+...+.
T Consensus 282 ~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (670)
T KOG0239|consen 282 QSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQS 361 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCcccc
Confidence 999999999998777 899999999999999999999999999998764 4555555555778889988877777778
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCC
Q 001550 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNS 620 (1055)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~ 620 (1055)
|.||+||+|.++|++||.++.|+|+++|||||+||||||||||||||||.|| +++++|||||++++||..+.....+
T Consensus 362 f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g 438 (670)
T KOG0239|consen 362 FKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSG 438 (670)
T ss_pred ceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999996 5788999999999999999998889
Q ss_pred ceEEEEEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCC
Q 001550 621 ILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSS 700 (1055)
Q Consensus 621 ~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SS 700 (1055)
|.|.+.+||+|||||+|+|||++.....++.|..+. .+...+.+++...|.+.+++..+++.|..||++++|.+|++||
T Consensus 439 ~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~-~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SS 517 (670)
T KOG0239|consen 439 WKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDA-EGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSS 517 (670)
T ss_pred ceEEeeeehhHHHHHHHHHhccccccccceeEEEcC-CCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhh
Confidence 999999999999999999999887534455555444 4568888899999999999999999999999999999999999
Q ss_pred CcccEEEEEEEeEecCCCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccccCchh
Q 001550 701 RSHSILTIHVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKL 780 (1055)
Q Consensus 701 RSH~IftI~V~~~~~~~~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKL 780 (1055)
|||+||+|+|.+.+..++....|+|+|||||||||+++++++|+|++|+++||+||++||+||.||+.++.|||||||||
T Consensus 518 RSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKL 597 (670)
T KOG0239|consen 518 RSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKL 597 (670)
T ss_pred ccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCcccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcchHHHHHHHHHHHHHHH
Q 001550 781 TQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGSDVRELMEQVGSLKDII 851 (1055)
Q Consensus 781 TrLLqdSLGGnskTlmI~~ISP~~~~~~ETLsTL~FA~Rak~I~~~~~k~~~~~~~v~eL~~qv~~Lk~~i 851 (1055)
|+|||+||||++||+|||+|||...++.||+++|+||+||+.+.+|+++..........++..++.++..+
T Consensus 598 T~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~~ 668 (670)
T KOG0239|consen 598 TQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEKLST 668 (670)
T ss_pred HHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999988888888877777766543
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-84 Score=755.27 Aligned_cols=353 Identities=41% Similarity=0.653 Sum_probs=309.9
Q ss_pred cCCEEEEeecCCCCCcccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhc
Q 001550 493 KGNIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1055)
Q Consensus 493 KGnIRV~~RVRP~~~~E~~~--~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1055)
.-+|+|++|+||+.+.+... ...+.+.+..+.+.+.+|..+.....++|+||+||+++++|++||.. +.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 35799999999998755432 23445555667788888776666677889999999999999999998 5999999999
Q ss_pred CcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001550 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1055)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1055)
|||+||||||||||||||||.|+ +++..|||||++.+||..++.+.+...|.|+|||+|||||+|+|||++..+ +.
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~---~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~-~~ 159 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGP---DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP-KG 159 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCC---ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-CC
Confidence 99999999999999999999997 378899999999999999998887779999999999999999999998764 45
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEec-C--CCcEEEeeeE
Q 001550 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL-K--NGAILRGSLH 726 (1055)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~--~~~~~~skL~ 726 (1055)
+.++.+. ..|+++.+++...+.+++|++.+|..|.++|.+++|.||..|||||+||||+|++... . .....+|+|+
T Consensus 160 l~lre~p-~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rln 238 (574)
T KOG4280|consen 160 LELREDP-KCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLN 238 (574)
T ss_pred ceeeEcC-CCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceee
Confidence 6666655 6788999999999999999999999999999999999999999999999999998221 2 2246789999
Q ss_pred EEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCC-CccccCchhhhhhhhccCCCcccceeEecCCCCC
Q 001550 727 LIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP-HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVD 805 (1055)
Q Consensus 727 LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~-hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~ 805 (1055)
|||||||||..++++.|+|++||.+||+||++||+||.+|++..+ ||||||||||+||||||||||||+|||||+|+..
T Consensus 239 lvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~ 318 (574)
T KOG4280|consen 239 LVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSD 318 (574)
T ss_pred eeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhh
Confidence 999999999999999999999999999999999999999998876 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhHhccccccccccCCCc-chHHHHHHHHHHHHHH
Q 001550 806 SYSETISTLKFAERVSGVELGAARSNKEG-SDVRELMEQVGSLKDI 850 (1055)
Q Consensus 806 ~~~ETLsTL~FA~Rak~I~~~~~k~~~~~-~~v~eL~~qv~~Lk~~ 850 (1055)
+++||++||+||+|++.|++.+..+.... ..+++|++++..|+..
T Consensus 319 ~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~ 364 (574)
T KOG4280|consen 319 NYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKE 364 (574)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHh
Confidence 99999999999999999999987655443 4455555555444443
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-82 Score=763.94 Aligned_cols=383 Identities=36% Similarity=0.578 Sum_probs=322.7
Q ss_pred CCEEEEeecCCCCCcccCCCccEEE--eCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001550 494 GNIRVYCRIRPFLPGQSKKQTTIEY--IGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~~~~~v~~--~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1055)
-||+|+|||||++..|....+.+.+ .+...+|.|... ..++...|+|+||+||||.+.|.+||.. +.|+|..|+.|
T Consensus 49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~G 127 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-IASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEG 127 (1041)
T ss_pred CceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-cccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhcc
Confidence 5999999999999888655444333 222345776654 2234357899999999999999999987 69999999999
Q ss_pred cceeEEeecccCCCcceeeecCC----CCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCC
Q 001550 571 YNVCIFAYGQTGSGKTYTMSGPC----ISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGP 646 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~----~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~ 646 (1055)
||||||||||||+||||||+|+. +..+.+.||||||+.+||+.++... ..|.|.|||+|+|||.|+|||++...
T Consensus 128 yNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 128 YNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred CCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCccc
Confidence 99999999999999999999953 3356789999999999999988654 78999999999999999999998765
Q ss_pred C-ccccccccc----CCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCC-C--
Q 001550 647 Q-RRLGIWNAT----LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN-G-- 718 (1055)
Q Consensus 647 ~-~~l~i~~~~----~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~-~-- 718 (1055)
. +.+.+..+. ..|++++.++.+.+|.++.|++.+|.+|...|.+++|.||.+|||||+||+|+|.-..... |
T Consensus 206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~gee 285 (1041)
T KOG0243|consen 206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEE 285 (1041)
T ss_pred cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchh
Confidence 4 445554444 4589999999999999999999999999999999999999999999999999996543322 2
Q ss_pred cEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccccCchhhhhhhhccCCCcccceeE
Q 001550 719 AILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMV 798 (1055)
Q Consensus 719 ~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnskTlmI~ 798 (1055)
-+..|+|+||||||||.++++|+.+.|.+|+..||+||.+||+||+||..+..|||||+|||||||||||||.+||+||+
T Consensus 286 lvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIA 365 (1041)
T KOG0243|consen 286 LVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIA 365 (1041)
T ss_pred hHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEE
Confidence 25679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcch--HHHHHHHHHHHHHHHHHHH--------------------H
Q 001550 799 QLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGSD--VRELMEQVGSLKDIITKKD--------------------E 856 (1055)
Q Consensus 799 ~ISP~~~~~~ETLsTL~FA~Rak~I~~~~~k~~~~~~~--v~eL~~qv~~Lk~~i~~~~--------------------e 856 (1055)
||||+..+++||++||.||.||++|+++|..+.+-.+. ++++..++..||..+...+ +
T Consensus 366 TiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~ 445 (1041)
T KOG0243|consen 366 TISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKE 445 (1041)
T ss_pred EeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHH
Confidence 99999999999999999999999999998776554433 5777777777777654322 2
Q ss_pred HHHHHHHHHhhhhhhhhhhcccc
Q 001550 857 EIERLQVLKANISGVRHRVRSLS 879 (1055)
Q Consensus 857 ei~~Lq~l~~~~~~~r~~~~~~~ 879 (1055)
-.++|+++..++..++..+..+.
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~ 468 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLT 468 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22455566666666666665543
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-82 Score=751.71 Aligned_cols=355 Identities=37% Similarity=0.576 Sum_probs=305.4
Q ss_pred CCEEEEeecCCCCCcccCCCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCC-------CCChHHHHhc-hHHHHH
Q 001550 494 GNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGP-------EASQEEVFLD-TRPLIR 565 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~~~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~-------~atQeeVf~~-~~pLV~ 565 (1055)
.+|.|.||||||+..|....+...+...++++.|.+|... ++ ...|+||+.|+. -++|..||++ +.++++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~-k~-~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS-KD-APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc-cc-CCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 4799999999999998765544333334556666666432 22 344999999964 3889999999 699999
Q ss_pred HhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHh-ccCCceEEEEEEEEEEecceeeeccCCC
Q 001550 566 SVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISES-RKNSILYEVGVQMVEIYNEQVRDLLSSD 644 (1055)
Q Consensus 566 svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~V~DLL~~~ 644 (1055)
.+++||||||||||||||||||||+|.. .++++|||||+|++||..+.. ......|.|.|||+|||||.|+|||+..
T Consensus 82 ~AfEGYN~ClFAYGQTGSGKSYTMMG~~--~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQTGSGKSYTMMGFQ--EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHhcccceEEEEeccCCCCcceeeeccC--CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 9999999999999999999999999953 568899999999999997764 4456899999999999999999999943
Q ss_pred CCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCC--C--cE
Q 001550 645 GPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN--G--AI 720 (1055)
Q Consensus 645 ~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~--~--~~ 720 (1055)
.+...+.++..+. .|+++.+++...|++..|+..+|..|++.|++++|+||+.|||||+||||.+.+..... + ..
T Consensus 160 ~~kg~LRVREHP~-lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~se 238 (1221)
T KOG0245|consen 160 KSKGGLRVREHPI-LGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSE 238 (1221)
T ss_pred CCCCCceeeccCc-cChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcce
Confidence 3444555555443 45677788888888999999999999999999999999999999999999999876543 3 56
Q ss_pred EEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC-------CCCccccCchhhhhhhhccCCCcc
Q 001550 721 LRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK-------NPHVPYRNSKLTQVLQSSLGGQAK 793 (1055)
Q Consensus 721 ~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-------~~hVPYRdSKLTrLLqdSLGGnsk 793 (1055)
.+|+|+|||||||||++.++++|+|||||.+|||||.+||+||+||++. ..+||||||.|||||+++||||||
T Consensus 239 k~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSK 318 (1221)
T KOG0245|consen 239 KVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSK 318 (1221)
T ss_pred eeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcch
Confidence 7899999999999999999999999999999999999999999999853 348999999999999999999999
Q ss_pred cceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCC-CcchHHHHHHHHHHHHHHHHH
Q 001550 794 TLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNK-EGSDVRELMEQVGSLKDIITK 853 (1055)
Q Consensus 794 TlmI~~ISP~~~~~~ETLsTL~FA~Rak~I~~~~~k~~~-~~~~v~eL~~qv~~Lk~~i~~ 853 (1055)
|+||++|||++.||+|||+|||||.|||.|.++++.+.. ..+-+|+|+++|..||..+..
T Consensus 319 TaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~ 379 (1221)
T KOG0245|consen 319 TAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRA 379 (1221)
T ss_pred hhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998876543 345699999999999988654
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=5.5e-78 Score=730.88 Aligned_cols=360 Identities=37% Similarity=0.597 Sum_probs=301.0
Q ss_pred hhhhhhhhhhc----cCCEEEEeecCCCCCcccCCCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHH
Q 001550 482 NRRLYNEVQDL----KGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVF 557 (1055)
Q Consensus 482 rRkL~N~vqel----KGnIRV~~RVRP~~~~E~~~~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf 557 (1055)
+|||..+...- .++|+|||||||+.+.+.. ...+... .++.+.+. .+.|.||+||+++++|++||
T Consensus 82 ~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~E~g-~~iV~~~-s~dsl~I~---------~qtFtFD~VFdp~aTQedVF 150 (1320)
T PLN03188 82 KRKLSAETAPENGVSDSGVKVIVRMKPLNKGEEG-EMIVQKM-SNDSLTIN---------GQTFTFDSIADPESTQEDIF 150 (1320)
T ss_pred hccccccccccccCCCCCeEEEEEcCCCCCccCC-CeeEEEc-CCCeEEEe---------CcEEeCCeeeCCCCCHHHHH
Confidence 45666544333 5799999999999887543 2233333 34455542 25799999999999999999
Q ss_pred hc-hHHHHHHhhcCcceeEEeecccCCCcceeeecCCCC------CCCccchhHHHHHHHHHHHHhc-----cCCceEEE
Q 001550 558 LD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCIS------STEDWGVNYRALNDLFEISESR-----KNSILYEV 625 (1055)
Q Consensus 558 ~~-~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~------~~~~~GIipRal~~LF~~~~~~-----~~~~~~~V 625 (1055)
.. +.|+|+++|+|||+||||||||||||||||+|+... ...++|||||++++||..+... ...+.|.|
T Consensus 151 e~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V 230 (1320)
T PLN03188 151 QLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQC 230 (1320)
T ss_pred HHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEE
Confidence 98 589999999999999999999999999999997432 3467899999999999987642 24568999
Q ss_pred EEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccE
Q 001550 626 GVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI 705 (1055)
Q Consensus 626 ~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~I 705 (1055)
+|||+|||||+|+|||++.. +.+.++.+. .+++++.++++..|.+++|++.+|..|..+|++++|.+|..|||||+|
T Consensus 231 ~vSyLEIYNEkI~DLLsp~~--k~L~IRED~-kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaI 307 (1320)
T PLN03188 231 RCSFLEIYNEQITDLLDPSQ--KNLQIREDV-KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSV 307 (1320)
T ss_pred EEEEEeeecCcceecccccc--CCceEEEcC-CCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCcee
Confidence 99999999999999998754 345555443 567888999999999999999999999999999999999999999999
Q ss_pred EEEEEEeEecC--C--CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc-----CCCCcccc
Q 001550 706 LTIHVRGTDLK--N--GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH-----KNPHVPYR 776 (1055)
Q Consensus 706 ftI~V~~~~~~--~--~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~-----k~~hVPYR 776 (1055)
|+|+|...... . .....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+. +..|||||
T Consensus 308 FtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYR 387 (1320)
T PLN03188 308 FTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYR 387 (1320)
T ss_pred EEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCC
Confidence 99999865432 2 235679999999999999999999999999999999999999999999985 45799999
Q ss_pred CchhhhhhhhccCCCcccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001550 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGSDVRELMEQVGSLKDIITKKDE 856 (1055)
Q Consensus 777 dSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~ETLsTL~FA~Rak~I~~~~~k~~~~~~~v~eL~~qv~~Lk~~i~~~~e 856 (1055)
+||||+||||+|||||+|+|||||||...+++||++||+||+||+.|++.+..+..... .+..|+..|.++++
T Consensus 388 DSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~-------~vn~LrelIr~Lk~ 460 (1320)
T PLN03188 388 DSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD-------DVNFLREVIRQLRD 460 (1320)
T ss_pred cchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh-------hHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998866543332 34445556666666
Q ss_pred HHHHHH
Q 001550 857 EIERLQ 862 (1055)
Q Consensus 857 ei~~Lq 862 (1055)
|+.+|+
T Consensus 461 EL~rLK 466 (1320)
T PLN03188 461 ELQRVK 466 (1320)
T ss_pred HHHHHH
Confidence 666665
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.5e-77 Score=674.72 Aligned_cols=320 Identities=40% Similarity=0.662 Sum_probs=285.5
Q ss_pred CEEEEeecCCCCCcccCC--CccEEEeCCCCeEEEeCCCCC---------CCCCceeeeeceeeCCCCChHHHHhc-hHH
Q 001550 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQ---------GKDNHRLFKFNKVFGPEASQEEVFLD-TRP 562 (1055)
Q Consensus 495 nIRV~~RVRP~~~~E~~~--~~~v~~~~~~~~~vi~~p~~~---------~~~~~k~F~FD~VF~~~atQeeVf~~-~~p 562 (1055)
+|+|||||||+.+.|... ..++.+. + +.+++.+|... .....+.|.||+||+++++|++||+. +.|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVV-D-DRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEc-C-CCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 699999999999877433 3344443 3 34445555432 12346789999999999999999998 589
Q ss_pred HHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccC
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLS 642 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~ 642 (1055)
+|+++++|||+||||||||||||||||+|+ ..++||+||++++||+.++...+.+.|.|++||+|||||+|+|||+
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~----~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 154 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGT----DSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLS 154 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCC----CCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCC
Confidence 999999999999999999999999999995 3789999999999999998887789999999999999999999998
Q ss_pred CCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecC---CCc
Q 001550 643 SDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK---NGA 719 (1055)
Q Consensus 643 ~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~---~~~ 719 (1055)
+.. ..+.++.+. .+++++.++++..+.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+.. ...
T Consensus 155 ~~~--~~l~i~ed~-~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~ 231 (338)
T cd01370 155 PSS--GPLELREDP-NQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQ 231 (338)
T ss_pred CCC--CCceEEEcC-CCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCc
Confidence 753 345555443 47788899999999999999999999999999999999999999999999999988775 456
Q ss_pred EEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC---CCccccCchhhhhhhhccCCCcccce
Q 001550 720 ILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN---PHVPYRNSKLTQVLQSSLGGQAKTLM 796 (1055)
Q Consensus 720 ~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hVPYRdSKLTrLLqdSLGGnskTlm 796 (1055)
...|+|+|||||||||..+++..|.+++|+.+||+||.+|++||.+|+.++ .|||||+||||+||||+|||||+|+|
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~ 311 (338)
T cd01370 232 VRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVM 311 (338)
T ss_pred EEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEE
Confidence 788999999999999999999999999999999999999999999999887 89999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHHHHhHhccc
Q 001550 797 MVQLNPDVDSYSETISTLKFAERVSGV 823 (1055)
Q Consensus 797 I~~ISP~~~~~~ETLsTL~FA~Rak~I 823 (1055)
|+||||+..+++||++||+||+||++|
T Consensus 312 I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 312 IANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999986
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.6e-76 Score=665.06 Aligned_cols=320 Identities=41% Similarity=0.608 Sum_probs=277.2
Q ss_pred CCEEEEeecCCCCCcccCCC--ccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001550 494 GNIRVYCRIRPFLPGQSKKQ--TTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~~~--~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1055)
.+|||||||||+.+.|.... .++.. ..++.+++... ..+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~-~~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G 73 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKK-LSSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSG 73 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEE-cCCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 48999999999988775432 23332 23344444321 14689999999999999999998 59999999999
Q ss_pred cceeEEeecccCCCcceeeecCCCC----CCCccchhHHHHHHHHHHHHhc----cCCceEEEEEEEEEEecceeeeccC
Q 001550 571 YNVCIFAYGQTGSGKTYTMSGPCIS----STEDWGVNYRALNDLFEISESR----KNSILYEVGVQMVEIYNEQVRDLLS 642 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~----~~~~~GIipRal~~LF~~~~~~----~~~~~~~V~vS~lEIYnE~V~DLL~ 642 (1055)
||+||||||||||||||||+|+... ...++||+||++++||..+... .....|.|.+||+|||||+|+|||+
T Consensus 74 ~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~ 153 (337)
T cd01373 74 YNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLD 153 (337)
T ss_pred CceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCC
Confidence 9999999999999999999997532 2357899999999999977543 2457899999999999999999998
Q ss_pred CCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCC--cE
Q 001550 643 SDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNG--AI 720 (1055)
Q Consensus 643 ~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~--~~ 720 (1055)
+... .+.++.+ ..+++++.++++..|.+++|++++|..|.++|++++|.+|..|||||+||+|+|...+...+ ..
T Consensus 154 ~~~~--~l~i~e~-~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~ 230 (337)
T cd01373 154 PTSR--NLKIRED-IKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNI 230 (337)
T ss_pred CCCC--CceEEEC-CCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcE
Confidence 7543 3445443 34678889999999999999999999999999999999999999999999999987665443 35
Q ss_pred EEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc----CCCCccccCchhhhhhhhccCCCcccce
Q 001550 721 LRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH----KNPHVPYRNSKLTQVLQSSLGGQAKTLM 796 (1055)
Q Consensus 721 ~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~----k~~hVPYRdSKLTrLLqdSLGGnskTlm 796 (1055)
..|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||||+|||||+|+|
T Consensus 231 ~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~ 310 (337)
T cd01373 231 RTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTI 310 (337)
T ss_pred EEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEE
Confidence 679999999999999999999999999999999999999999999984 4689999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHHHHhHhccc
Q 001550 797 MVQLNPDVDSYSETISTLKFAERVSGV 823 (1055)
Q Consensus 797 I~~ISP~~~~~~ETLsTL~FA~Rak~I 823 (1055)
||||||+..+++||++||+||+||+.|
T Consensus 311 I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 311 IANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999876
No 8
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=5.4e-77 Score=676.29 Aligned_cols=327 Identities=40% Similarity=0.628 Sum_probs=292.2
Q ss_pred cCCEEEEeecCCCCCcccCCCcc-EE-EeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhc
Q 001550 493 KGNIRVYCRIRPFLPGQSKKQTT-IE-YIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1055)
Q Consensus 493 KGnIRV~~RVRP~~~~E~~~~~~-v~-~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1055)
-++|+|+||+||....|...... +. +.+.+..+++.. ++.. ++|.||+||.|+++|++||.. +.|+|++||.
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~----~~~~-~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLET----TKET-KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEec----cccc-ccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 48999999999998766433222 22 222134455432 2333 789999999999999999998 6999999999
Q ss_pred CcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001550 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1055)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1055)
|||+||||||||||||||||.|... ++...||+||++++||..+........|.|+|||+|||+|+|+|||++... .
T Consensus 81 GYNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~--n 157 (607)
T KOG0240|consen 81 GYNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKT--N 157 (607)
T ss_pred ccceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccC--C
Confidence 9999999999999999999999643 556779999999999999999888899999999999999999999997543 3
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCCcEEEeeeEEEe
Q 001550 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLID 729 (1055)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVD 729 (1055)
+.+..+ ...++++.+++...|.++++++++++.|..+|+++.|.||.+|||||+||+|+|.+.+.++.....|+|+|||
T Consensus 158 lsvheD-K~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVD 236 (607)
T KOG0240|consen 158 LSVHED-KNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVD 236 (607)
T ss_pred ceeecc-cCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEE
Confidence 444444 5678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC-CCCccccCchhhhhhhhccCCCcccceeEecCCCCCCHH
Q 001550 730 LAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK-NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1055)
Q Consensus 730 LAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-~~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~ 808 (1055)
|||||+++++++.|.-+.|+.+||+||+|||+||+||+.+ ..|||||||||||+|||||||||+|.+|+|++|+..+-.
T Consensus 237 LaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ 316 (607)
T KOG0240|consen 237 LAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEA 316 (607)
T ss_pred cccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccc
Confidence 9999999999999999999999999999999999999988 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccccc
Q 001550 809 ETISTLKFAERVSGVELGAA 828 (1055)
Q Consensus 809 ETLsTL~FA~Rak~I~~~~~ 828 (1055)
||.+||+|+.||+.|++.+.
T Consensus 317 ET~STl~fg~rak~ikN~v~ 336 (607)
T KOG0240|consen 317 ETKSTLRFGNRAKTIKNTVW 336 (607)
T ss_pred ccccchhhccccccccchhh
Confidence 99999999999999986543
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-76 Score=707.51 Aligned_cols=352 Identities=39% Similarity=0.609 Sum_probs=296.0
Q ss_pred cCCEEEEeecCCCCCcccCCCccEEE-eCCCCeEEEeC-CCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhc
Q 001550 493 KGNIRVYCRIRPFLPGQSKKQTTIEY-IGENGELVVSN-PLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1055)
Q Consensus 493 KGnIRV~~RVRP~~~~E~~~~~~v~~-~~~~~~~vi~~-p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1055)
..+|.|+|||||+.+.+........+ ...+..+.... +..........|.||+||+++++|++||+. ++|+|.+||.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 35899999999998874332222222 22333332221 111111114789999999999999999998 7999999999
Q ss_pred CcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001550 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1055)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1055)
|||++|||||||||||||||.| ...+|||||+|+.+||+.+.... ...|.|.|||+|||||.|+|||+++++.
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G----~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~-- 157 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSG----SEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGD-- 157 (675)
T ss_pred CcccceeeecCCCCCCceEEec----cCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCC--
Confidence 9999999999999999999999 56789999999999999998766 7899999999999999999999988754
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCCcEEEeeeEEEe
Q 001550 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLID 729 (1055)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVD 729 (1055)
+.++.+ ..+++++.+++..++.++++++.+|..|.++|+++.|.+|..|||||+||+|.|.......+. ..++|+|||
T Consensus 158 L~irED-~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lID 235 (675)
T KOG0242|consen 158 LRLRED-SEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLID 235 (675)
T ss_pred ceEeEc-CCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhh
Confidence 455544 456889999999999999999999999999999999999999999999999999987655443 678999999
Q ss_pred cCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC--CCCccccCchhhhhhhhccCCCcccceeEecCCCCCCH
Q 001550 730 LAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK--NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSY 807 (1055)
Q Consensus 730 LAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k--~~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~ 807 (1055)
||||||+.++++.|.|++||.+||+||.+||+||.+|+.+ ..||||||||||||||++|||||+|+|||||+|+..+|
T Consensus 236 LAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~ 315 (675)
T KOG0242|consen 236 LAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHY 315 (675)
T ss_pred hhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHH
Confidence 9999999999999999999999999999999999999976 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhccccccccccCC--CcchHHHHHHHHHHHHHHHHH
Q 001550 808 SETISTLKFAERVSGVELGAARSNK--EGSDVRELMEQVGSLKDIITK 853 (1055)
Q Consensus 808 ~ETLsTL~FA~Rak~I~~~~~k~~~--~~~~v~eL~~qv~~Lk~~i~~ 853 (1055)
+||.+||+||+|++.|++.+..+.. +...+..++.++..|+..+..
T Consensus 316 ~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~ 363 (675)
T KOG0242|consen 316 EETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELER 363 (675)
T ss_pred HHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999999988765422 222333444555555555544
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.5e-74 Score=653.74 Aligned_cols=316 Identities=38% Similarity=0.584 Sum_probs=279.1
Q ss_pred CCEEEEeecCCCCCcccC--CCccEEEeCCCCeEEEeCCCCC--------CCCCceeeeeceeeCCCCChHHHHhc-hHH
Q 001550 494 GNIRVYCRIRPFLPGQSK--KQTTIEYIGENGELVVSNPLKQ--------GKDNHRLFKFNKVFGPEASQEEVFLD-TRP 562 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~--~~~~v~~~~~~~~~vi~~p~~~--------~~~~~k~F~FD~VF~~~atQeeVf~~-~~p 562 (1055)
.+|+|||||||+.+.|.. ...++.+ .+++.+.+..|... +....+.|.||+||+++++|++||+. +.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p 79 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEV-INSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALP 79 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEE-cCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHH
Confidence 379999999999987654 2344444 35567777665431 22356789999999999999999998 589
Q ss_pred HHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccC
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLS 642 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~ 642 (1055)
+|+++++|||+||||||||||||||||+|+ ..++||+||++++||+.+.. |.|.|||+|||||+|+|||+
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~----~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~ 149 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGS----PGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLE 149 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCC
Confidence 999999999999999999999999999995 47899999999999998865 89999999999999999998
Q ss_pred CCCC----CcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCC-
Q 001550 643 SDGP----QRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN- 717 (1055)
Q Consensus 643 ~~~~----~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~- 717 (1055)
+... ...+.++.+ ..+++++.++++..+.+++|++.+|..|.++|.+++|.+|.+|||||+||+|+|.+.+...
T Consensus 150 ~~~~~~~~~~~l~i~ed-~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~ 228 (345)
T cd01368 150 DSPSSTKKRQSLRLRED-HNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSD 228 (345)
T ss_pred CccccccCCCceEEEEC-CCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcc
Confidence 7653 234555543 3478889999999999999999999999999999999999999999999999998765432
Q ss_pred -------CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc------CCCCccccCchhhhhh
Q 001550 718 -------GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH------KNPHVPYRNSKLTQVL 784 (1055)
Q Consensus 718 -------~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~------k~~hVPYRdSKLTrLL 784 (1055)
+....|+|+|||||||||..++++.|++++|+.+||+||++|++||.+|++ +..|||||+||||+||
T Consensus 229 ~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL 308 (345)
T cd01368 229 GDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLF 308 (345)
T ss_pred cccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHH
Confidence 456789999999999999999999999999999999999999999999986 5689999999999999
Q ss_pred hhccCCCcccceeEecCCCCCCHHHHHHHHHHHhHhc
Q 001550 785 QSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVS 821 (1055)
Q Consensus 785 qdSLGGnskTlmI~~ISP~~~~~~ETLsTL~FA~Rak 821 (1055)
||+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 309 ~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 309 QNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999974
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.7e-73 Score=647.86 Aligned_cols=328 Identities=40% Similarity=0.620 Sum_probs=288.7
Q ss_pred CCEEEEeecCCCCCcccCCCc--cEEEeCCCCeEEEeCCCCCC--CCCceeeeeceeeCCC-------CChHHHHhc-hH
Q 001550 494 GNIRVYCRIRPFLPGQSKKQT--TIEYIGENGELVVSNPLKQG--KDNHRLFKFNKVFGPE-------ASQEEVFLD-TR 561 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~~~~--~v~~~~~~~~~vi~~p~~~~--~~~~k~F~FD~VF~~~-------atQeeVf~~-~~ 561 (1055)
++|+|||||||+...|..... ++.+ .+..+.+.+|.... ....+.|.||+||++. ++|++||+. +.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~--~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQM--PGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEE--CCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 689999999999887654333 3333 33677777765311 2345789999999999 999999998 58
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccC-CceEEEEEEEEEEecceeeec
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN-SILYEVGVQMVEIYNEQVRDL 640 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DL 640 (1055)
|+|+++++|||+||||||||||||||||+|+ ..++||+||++++||+.+..... ...|.|.|||+|||||+|+||
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~----~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DL 154 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGY----KEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDL 154 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeC
Confidence 9999999999999999999999999999995 35789999999999998876554 678999999999999999999
Q ss_pred cCCCC-CCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecC---
Q 001550 641 LSSDG-PQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK--- 716 (1055)
Q Consensus 641 L~~~~-~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~--- 716 (1055)
|++.. ....+.++.+ ..+++++.++++..+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+..
T Consensus 155 L~~~~~~~~~l~i~~~-~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~ 233 (356)
T cd01365 155 LNPKKKNKGNLKVREH-PVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET 233 (356)
T ss_pred CCCCccCCcCceEEEC-CCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC
Confidence 99875 2334555543 346678899999999999999999999999999999999999999999999999987654
Q ss_pred -CCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC--------CCCccccCchhhhhhhhc
Q 001550 717 -NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK--------NPHVPYRNSKLTQVLQSS 787 (1055)
Q Consensus 717 -~~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k--------~~hVPYRdSKLTrLLqdS 787 (1055)
......|+|+|||||||||..+++..|++++|+.+||+||++|++||.+|+.. +.|||||+||||+||||+
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~ 313 (356)
T cd01365 234 DLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKEN 313 (356)
T ss_pred CCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHh
Confidence 34578899999999999999999999999999999999999999999999853 489999999999999999
Q ss_pred cCCCcccceeEecCCCCCCHHHHHHHHHHHhHhcccccccc
Q 001550 788 LGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAA 828 (1055)
Q Consensus 788 LGGnskTlmI~~ISP~~~~~~ETLsTL~FA~Rak~I~~~~~ 828 (1055)
||||++|+||+||||...+++||++||+||+|++.|++.|.
T Consensus 314 lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~ 354 (356)
T cd01365 314 LGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAV 354 (356)
T ss_pred cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 99999999999999999999999999999999999998764
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7e-73 Score=634.77 Aligned_cols=315 Identities=37% Similarity=0.520 Sum_probs=277.0
Q ss_pred CCEEEEeecCCCCCcccCCC-ccEEEeCCCCeEEEeCCCCCC----CCCceeeeeceeeCCCCChHHHHhc-hHHHHHHh
Q 001550 494 GNIRVYCRIRPFLPGQSKKQ-TTIEYIGENGELVVSNPLKQG----KDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSV 567 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~~~-~~v~~~~~~~~~vi~~p~~~~----~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~sv 567 (1055)
++|+|||||||+.+.|.... ..+..+..++.+.+..|...- ....+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998775322 233333344577776553211 1125789999999999999999998 69999999
Q ss_pred hcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCC
Q 001550 568 LDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQ 647 (1055)
Q Consensus 568 LdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~ 647 (1055)
++|||+||||||||||||||||+|+ ..++||+||++++||+.++... ..|.|.+||+|||||+|+|||++.
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~----~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--- 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGD----ENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR--- 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCc----CCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc---
Confidence 9999999999999999999999995 4789999999999999987654 679999999999999999999873
Q ss_pred cccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCCcEEEeeeEE
Q 001550 648 RRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHL 727 (1055)
Q Consensus 648 ~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~L 727 (1055)
+.+.++. +..+++++.++++..|.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+. ....|+|+|
T Consensus 152 ~~l~i~~-~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~ 227 (322)
T cd01367 152 KRLSVLE-DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSF 227 (322)
T ss_pred cceeEEE-cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEE
Confidence 3455544 445778899999999999999999999999999999999999999999999999987664 567899999
Q ss_pred EecCCCccccCCc-chhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccccCchhhhhhhhccCCCcccceeEecCCCCCC
Q 001550 728 IDLAGSERVDRSE-ATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1055)
Q Consensus 728 VDLAGSER~~ks~-~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~ 806 (1055)
||||||||...+. ..+++++|+.+||+||++|++||.+|++++.||||||||||+||||+|||||+|+|||||||...+
T Consensus 228 vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~ 307 (322)
T cd01367 228 IDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASS 307 (322)
T ss_pred eecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhh
Confidence 9999999987765 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhc
Q 001550 807 YSETISTLKFAERVS 821 (1055)
Q Consensus 807 ~~ETLsTL~FA~Rak 821 (1055)
++||++||+||+|+|
T Consensus 308 ~~eTl~tL~fa~r~k 322 (322)
T cd01367 308 CEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.8e-72 Score=638.34 Aligned_cols=334 Identities=41% Similarity=0.624 Sum_probs=292.5
Q ss_pred CCEEEEeecCCCCCcccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001550 494 GNIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~~--~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1055)
+||+|+|||||+.+.|... ..++.+.+.+.++.+.++.. .....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 6999999999998887543 33444444445666655422 23356789999999999999999988 69999999999
Q ss_pred cceeEEeecccCCCcceeeecCCCC-------CCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCC
Q 001550 571 YNVCIFAYGQTGSGKTYTMSGPCIS-------STEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSS 643 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~-------~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~ 643 (1055)
||+||||||||||||||||+|+... ....+||+||++.+||+.++.. ...|.|.|||+|||||+|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997432 2457899999999999988765 567999999999999999999997
Q ss_pred CC-CCccccccccc-CCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCC---C
Q 001550 644 DG-PQRRLGIWNAT-LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN---G 718 (1055)
Q Consensus 644 ~~-~~~~l~i~~~~-~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~---~ 718 (1055)
.. ..+.+.+..+. ..+++++.++++..+.+++|++.++..|.++|++++|.+|..|||||+||+|+|.+..... .
T Consensus 159 ~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~ 238 (352)
T cd01364 159 ESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEE 238 (352)
T ss_pred ccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCc
Confidence 65 23455565553 4578899999999999999999999999999999999999999999999999998765432 3
Q ss_pred cEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccccCchhhhhhhhccCCCcccceeE
Q 001550 719 AILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMV 798 (1055)
Q Consensus 719 ~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnskTlmI~ 798 (1055)
....|+|+|||||||||..+.++.+.+++|+..||+||.+|++||.+|+.++.|||||+||||+||+|+|||||+|+||+
T Consensus 239 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~ 318 (352)
T cd01364 239 LVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIA 318 (352)
T ss_pred cEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHhHhcccccccccc
Q 001550 799 QLNPDVDSYSETISTLKFAERVSGVELGAARS 830 (1055)
Q Consensus 799 ~ISP~~~~~~ETLsTL~FA~Rak~I~~~~~k~ 830 (1055)
||||...+++||++||+||+|++.|.+.|..+
T Consensus 319 ~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n 350 (352)
T cd01364 319 TISPASINLEETLSTLEYAHRAKNIKNKPEVN 350 (352)
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999887543
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.7e-72 Score=631.56 Aligned_cols=326 Identities=42% Similarity=0.684 Sum_probs=290.1
Q ss_pred CCEEEEeecCCCCCcccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001550 494 GNIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~~--~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1055)
.||+|+|||||+++.|... ...+...+.++.+.+.+|........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 3899999999999877543 34455656777888877754444567899999999999999999988 69999999999
Q ss_pred cceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001550 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1055)
||+||||||||||||||||+|+.. ...++|||||++++||+.+....+ ..|.|.|||+|||||+|+|||++... ..+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~-~~l 157 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE-PPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQK-KKL 157 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC-cccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCCC-Cce
Confidence 999999999999999999999642 456899999999999998876554 78999999999999999999987642 345
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecC---CCcEEEeeeEE
Q 001550 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK---NGAILRGSLHL 727 (1055)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~---~~~~~~skL~L 727 (1055)
.++... .+++++.++++..+.+++|+..+|..|.++|.+++|.+|..|||||+||+|+|++.+.. .+....|+|+|
T Consensus 158 ~i~~~~-~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~ 236 (333)
T cd01371 158 ELKERP-DRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNL 236 (333)
T ss_pred eEEEcC-CCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEE
Confidence 555443 45778889999999999999999999999999999999999999999999999987764 34567899999
Q ss_pred EecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCC-CccccCchhhhhhhhccCCCcccceeEecCCCCCC
Q 001550 728 IDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP-HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1055)
Q Consensus 728 VDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~-hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~ 806 (1055)
||||||||..+++..|.+++|+..||+||.+|++||.+|+.+.+ |||||+||||+||+|+|||||+|+||+||+|...+
T Consensus 237 VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~ 316 (333)
T cd01371 237 VDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYN 316 (333)
T ss_pred EECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCcccc
Confidence 99999999999999999999999999999999999999998775 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccc
Q 001550 807 YSETISTLKFAERVSGV 823 (1055)
Q Consensus 807 ~~ETLsTL~FA~Rak~I 823 (1055)
++||++||+||+|++.|
T Consensus 317 ~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 317 YDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999876
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.8e-72 Score=628.02 Aligned_cols=314 Identities=36% Similarity=0.581 Sum_probs=281.3
Q ss_pred CEEEEeecCCCCCcccCCCccEEEeCCC----CeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhc
Q 001550 495 NIRVYCRIRPFLPGQSKKQTTIEYIGEN----GELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1055)
Q Consensus 495 nIRV~~RVRP~~~~E~~~~~~v~~~~~~----~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1055)
||+|||||||+.+.|.....++...+.+ ..+.+.+|... ...+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~--~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNR--GETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCC--CCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 6999999999998886666666665443 36677776422 235789999999999999999998 7999999999
Q ss_pred CcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001550 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1055)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1055)
|||+||||||||||||||||+|+ ..++||+||++++||+.++.. .+.|.|.+||+|||||.|+|||++... .
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~----~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~--~ 150 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGD----PNEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKK--E 150 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCC----cCccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCCC--C
Confidence 99999999999999999999995 458899999999999987654 377999999999999999999987532 3
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCCcEEEeeeEEEe
Q 001550 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLID 729 (1055)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVD 729 (1055)
+.++. +..+++++.+++...+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+. +....|+|+|||
T Consensus 151 l~i~~-~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VD 227 (319)
T cd01376 151 LPIRE-DKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLID 227 (319)
T ss_pred ceEEE-cCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEE
Confidence 44543 345778899999999999999999999999999999999999999999999999987754 346789999999
Q ss_pred cCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccccCchhhhhhhhccCCCcccceeEecCCCCCCHHH
Q 001550 730 LAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSE 809 (1055)
Q Consensus 730 LAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~E 809 (1055)
||||||..+++..|.+++|+.+||+||++|++||.+|+.+..|||||+|+||+||+|+|||||+|+||+||||...+++|
T Consensus 228 LAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (319)
T cd01376 228 LAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQD 307 (319)
T ss_pred CCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhc
Q 001550 810 TISTLKFAERVS 821 (1055)
Q Consensus 810 TLsTL~FA~Rak 821 (1055)
|++||+||+|++
T Consensus 308 Tl~TL~fa~r~~ 319 (319)
T cd01376 308 TLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 16
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-73 Score=658.41 Aligned_cols=355 Identities=38% Similarity=0.595 Sum_probs=307.2
Q ss_pred CCEEEEeecCCCCCcccCCCccEEEeCCCCeEEEeCCCCC---C-CCCceeeeeceeeCCC-------CChHHHHhch-H
Q 001550 494 GNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQ---G-KDNHRLFKFNKVFGPE-------ASQEEVFLDT-R 561 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~~~~~v~~~~~~~~~vi~~p~~~---~-~~~~k~F~FD~VF~~~-------atQeeVf~~~-~ 561 (1055)
.+|||.|||||++..|........+..+....++..|+.. + ..+.++|.||++|.+. +.|++||..+ .
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~ 83 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE 83 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence 6899999999999888655433222223333344433221 1 1467899999999763 7899999884 7
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhcc-CCceEEEEEEEEEEecceeeec
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRK-NSILYEVGVQMVEIYNEQVRDL 640 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~-~~~~~~V~vS~lEIYnE~V~DL 640 (1055)
-+|+++|+|||+||||||||||||||||+| ..+.+|||||++..||..+.... ....|+|.|||+|||||++|||
T Consensus 84 ~il~naf~GyNaCifaYGQtGsGKsYsmmG----t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 84 GILENAFQGYNACIFAYGQTGSGKSYSMMG----TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred HHHHHHhhccceeeEEecccCCCceeEeec----cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 789999999999999999999999999999 46789999999999999877543 5678999999999999999999
Q ss_pred cCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeE--ecCCC
Q 001550 641 LSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT--DLKNG 718 (1055)
Q Consensus 641 L~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~--~~~~~ 718 (1055)
|.|.+....+.++.... -++++++++...|++++|+-.+|..|+++|++++|+||..|||||+||.|.|.+. |..+|
T Consensus 160 LdPk~ssqtlkVrehsv-lGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg 238 (1714)
T KOG0241|consen 160 LDPKGSSQTLKVREHSV-LGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTG 238 (1714)
T ss_pred hCCCCCcceeEEeeccc-ccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccC
Confidence 99999888777766543 5688999999999999999999999999999999999999999999999999875 44444
Q ss_pred c--EEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC------CCCccccCchhhhhhhhccCC
Q 001550 719 A--ILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK------NPHVPYRNSKLTQVLQSSLGG 790 (1055)
Q Consensus 719 ~--~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k------~~hVPYRdSKLTrLLqdSLGG 790 (1055)
. ...|+|.|||||||||+.++++.|+|++|+.+||+||++||.||.||+.+ .++||||||.||+||||+|||
T Consensus 239 ~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGG 318 (1714)
T KOG0241|consen 239 HSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGG 318 (1714)
T ss_pred cchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCC
Confidence 3 35689999999999999999999999999999999999999999999953 469999999999999999999
Q ss_pred CcccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCCC-cchHHHHHHHHHHHHHHHHH
Q 001550 791 QAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKE-GSDVRELMEQVGSLKDIITK 853 (1055)
Q Consensus 791 nskTlmI~~ISP~~~~~~ETLsTL~FA~Rak~I~~~~~k~~~~-~~~v~eL~~qv~~Lk~~i~~ 853 (1055)
||+|+||+||||+.++|+|||+||+||.||+.|.+.+..+.++ .+.+++|.+++..|+..+..
T Consensus 319 NsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 319 NSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred CceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988776554 45689999999999888876
No 17
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=9.1e-72 Score=627.03 Aligned_cols=325 Identities=53% Similarity=0.862 Sum_probs=293.1
Q ss_pred cCCEEEEeecCCCCCcccCC-CccEEEeCCC-CeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhchHHHHHHhhcC
Q 001550 493 KGNIRVYCRIRPFLPGQSKK-QTTIEYIGEN-GELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDG 570 (1055)
Q Consensus 493 KGnIRV~~RVRP~~~~E~~~-~~~v~~~~~~-~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG 570 (1055)
||+|+|||||||+.+.+... ...+.+.+.+ ..+.+.++ ....+.|.||+||+++++|++||+.+.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 69999999999998887533 3445555444 55555443 234578999999999999999999899999999999
Q ss_pred cceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccC-CceEEEEEEEEEEecceeeeccCCCC-CCc
Q 001550 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN-SILYEVGVQMVEIYNEQVRDLLSSDG-PQR 648 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~-~~~ 648 (1055)
+|+||||||||||||||||+|+ ..++||+||++++||..++...+ .+.|.|.+||+|||||+|+|||++.. ...
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~----~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 152 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGP----PENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK 152 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCC----CCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCC
Confidence 9999999999999999999995 47889999999999998887654 78899999999999999999999763 233
Q ss_pred ccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCCcEEEeeeEEE
Q 001550 649 RLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLI 728 (1055)
Q Consensus 649 ~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LV 728 (1055)
.+.++.+. .+++++.+++...+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+||
T Consensus 153 ~l~i~~~~-~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~V 231 (329)
T cd01366 153 KLEIKHDS-KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLV 231 (329)
T ss_pred ceEEEECC-CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEE
Confidence 45555544 67888999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred ecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccccCchhhhhhhhccCCCcccceeEecCCCCCCHH
Q 001550 729 DLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1055)
Q Consensus 729 DLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~ 808 (1055)
||||||+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+++|||+++|+||+||||...+++
T Consensus 232 DLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~ 311 (329)
T cd01366 232 DLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLS 311 (329)
T ss_pred ECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccc
Q 001550 809 ETISTLKFAERVSGVELG 826 (1055)
Q Consensus 809 ETLsTL~FA~Rak~I~~~ 826 (1055)
||++||+||+|++.|++|
T Consensus 312 etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 312 ETLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHHhhcccCC
Confidence 999999999999999864
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=6.2e-72 Score=631.21 Aligned_cols=321 Identities=39% Similarity=0.664 Sum_probs=286.8
Q ss_pred CEEEEeecCCCCCcccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCc
Q 001550 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGY 571 (1055)
Q Consensus 495 nIRV~~RVRP~~~~E~~~--~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGy 571 (1055)
+|+|||||||+++.|... ..++.+.+.+..+++.+ .+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999877543 34555555555555532 4689999999999999999998 589999999999
Q ss_pred ceeEEeecccCCCcceeeecCCC--CCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCC-CCc
Q 001550 572 NVCIFAYGQTGSGKTYTMSGPCI--SSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDG-PQR 648 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G~~~--~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-~~~ 648 (1055)
|+||||||||||||||||+|+.. ....++|||||++++||..++.......|.|.|||+|||||+|+|||.+.. ...
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 99999999999999999999643 236789999999999999998877778999999999999999999998764 223
Q ss_pred ccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecC----------CC
Q 001550 649 RLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK----------NG 718 (1055)
Q Consensus 649 ~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~----------~~ 718 (1055)
.+.++. +..+++++.++++..+.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+.. ..
T Consensus 154 ~l~i~e-~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 154 PIQIRE-DSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CceEEE-CCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 444443 4458889999999999999999999999999999999999999999999999999988763 34
Q ss_pred cEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC---CCccccCchhhhhhhhccCCCcccc
Q 001550 719 AILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN---PHVPYRNSKLTQVLQSSLGGQAKTL 795 (1055)
Q Consensus 719 ~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hVPYRdSKLTrLLqdSLGGnskTl 795 (1055)
....|+|+||||||||+..++++.|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~ 312 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTL 312 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 5778999999999999999999999999999999999999999999999876 7999999999999999999999999
Q ss_pred eeEecCCCCCCHHHHHHHHHHHhHhcccc
Q 001550 796 MMVQLNPDVDSYSETISTLKFAERVSGVE 824 (1055)
Q Consensus 796 mI~~ISP~~~~~~ETLsTL~FA~Rak~I~ 824 (1055)
||+||||...+++||++||+||+|+++|+
T Consensus 313 ~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 313 MIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999885
No 19
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=9.5e-72 Score=626.05 Aligned_cols=320 Identities=43% Similarity=0.681 Sum_probs=287.5
Q ss_pred CCEEEEeecCCCCCcccC--CCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001550 494 GNIRVYCRIRPFLPGQSK--KQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~--~~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1055)
.+|+|+|||||+.+.|.. ...++.+ .++..+.+.++ ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~-~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G 75 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKF-PGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNG 75 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEE-cCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 489999999999887732 2334444 44456666654 245789999999999999999998 59999999999
Q ss_pred cceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001550 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1055)
||+||||||||||||||||+|+.. ...++||+||++++||+.+........|.|.+||+|||||.|+|||++... .+
T Consensus 76 ~n~~i~ayG~tgSGKT~Tm~G~~~-~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~--~l 152 (325)
T cd01369 76 YNGTIFAYGQTGSGKTYTMEGPPG-DPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKD--NL 152 (325)
T ss_pred ccceEEEeCCCCCCceEEecCCCC-ccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccC--Cc
Confidence 999999999999999999999643 245889999999999999988777788999999999999999999987643 34
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCCcEEEeeeEEEec
Q 001550 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDL 730 (1055)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDL 730 (1055)
.++. +..+++++.++++..+.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||||
T Consensus 153 ~i~~-~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDL 231 (325)
T cd01369 153 QVHE-DKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDL 231 (325)
T ss_pred eEEE-cCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEEC
Confidence 4443 345778889999999999999999999999999999999999999999999999999888888889999999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC-CCccccCchhhhhhhhccCCCcccceeEecCCCCCCHHH
Q 001550 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN-PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSE 809 (1055)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~-~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~E 809 (1055)
|||||..++++.|.+++|+..||+||++|++||.+|++++ .|||||+|+||+||+|+|||+|+|+||+||||...+++|
T Consensus 232 AGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~e 311 (325)
T cd01369 232 AGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESE 311 (325)
T ss_pred CCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHH
Confidence 9999999999999999999999999999999999999887 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhccc
Q 001550 810 TISTLKFAERVSGV 823 (1055)
Q Consensus 810 TLsTL~FA~Rak~I 823 (1055)
|++||+||+|+++|
T Consensus 312 Tl~TL~~a~r~~~i 325 (325)
T cd01369 312 TLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999876
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.3e-71 Score=623.96 Aligned_cols=315 Identities=39% Similarity=0.631 Sum_probs=282.6
Q ss_pred CEEEEeecCCCCCcccCCCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcce
Q 001550 495 NIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNV 573 (1055)
Q Consensus 495 nIRV~~RVRP~~~~E~~~~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~ 573 (1055)
||+|||||||+...|......+..+.+++.+++.+| ...+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 699999999999887654444444555556666554 345789999999999999999998 59999999999999
Q ss_pred eEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcccccc
Q 001550 574 CIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIW 653 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~ 653 (1055)
||||||||||||||||+|+ ..++||+||++++||..+.... ...|.|.+||+|||||+|+|||++.. ..+.+.
T Consensus 76 ~i~ayG~tgSGKT~T~~G~----~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~i~ 148 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGD----EQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP--QELRIR 148 (321)
T ss_pred eEEeecCCCCCCceeccCC----CCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC--CCceEE
Confidence 9999999999999999995 4788999999999999887654 56899999999999999999999875 344555
Q ss_pred cccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCC---CcEEEeeeEEEec
Q 001550 654 NATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN---GAILRGSLHLIDL 730 (1055)
Q Consensus 654 ~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~---~~~~~skL~LVDL 730 (1055)
.+. .+++++.++++..+.+++|++.+|..|.++|++++|.+|.+|||||+||+|+|.+.+... +....|+|+||||
T Consensus 149 ~~~-~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDL 227 (321)
T cd01374 149 EDP-NKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDL 227 (321)
T ss_pred ECC-CCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEEC
Confidence 433 467889999999999999999999999999999999999999999999999999887655 6678899999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC--CCccccCchhhhhhhhccCCCcccceeEecCCCCCCHH
Q 001550 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN--PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1055)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~ 808 (1055)
|||||..+.+ .+.+++|+.+||+||.+|++||.+|+.++ .|||||+||||+||+++|||||+|+|||||||...+++
T Consensus 228 AGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~ 306 (321)
T cd01374 228 AGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVE 306 (321)
T ss_pred CCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 9999999988 89999999999999999999999999885 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhccc
Q 001550 809 ETISTLKFAERVSGV 823 (1055)
Q Consensus 809 ETLsTL~FA~Rak~I 823 (1055)
||++||+||+|++.|
T Consensus 307 eTl~TL~~a~r~~~i 321 (321)
T cd01374 307 ETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999876
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=8.6e-71 Score=620.73 Aligned_cols=320 Identities=42% Similarity=0.618 Sum_probs=279.2
Q ss_pred CEEEEeecCCCCCcccCCCccEEEeCCCCeEEEeCCCCC------CCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHh
Q 001550 495 NIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQ------GKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSV 567 (1055)
Q Consensus 495 nIRV~~RVRP~~~~E~~~~~~v~~~~~~~~~vi~~p~~~------~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~sv 567 (1055)
.|+|+|||||+...+.. .+.+..++..+.+..|... .....+.|.||+||++ ++|++||+. +.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS---SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCCc---cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 48999999999874332 3445555555555544321 1123567999999999 999999998 58999999
Q ss_pred hcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCC--
Q 001550 568 LDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDG-- 645 (1055)
Q Consensus 568 LdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-- 645 (1055)
++|||+||||||||||||||||+|+.. +..++||+||++++||..++... +..|.|.+||+|||||+|+|||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999999743 44678999999999999987654 56799999999999999999999874
Q ss_pred --CCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEe--cCCCcEE
Q 001550 646 --PQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTD--LKNGAIL 721 (1055)
Q Consensus 646 --~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~--~~~~~~~ 721 (1055)
....+.++.+ ..+++++.++++..+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+ ..++...
T Consensus 155 ~~~~~~l~i~e~-~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~ 233 (334)
T cd01375 155 LESLPAVTILED-SEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVR 233 (334)
T ss_pred cccCCceEEEEc-CCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceE
Confidence 2234455443 3577889999999999999999999999999999999999999999999999999873 3445677
Q ss_pred EeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC-CCccccCchhhhhhhhccCCCcccceeEec
Q 001550 722 RGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN-PHVPYRNSKLTQVLQSSLGGQAKTLMMVQL 800 (1055)
Q Consensus 722 ~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~-~hVPYRdSKLTrLLqdSLGGnskTlmI~~I 800 (1055)
.|+|+|||||||||..+++..+.+++|+..||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 234 LSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 8999999999999999999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhHhc
Q 001550 801 NPDVDSYSETISTLKFAERVS 821 (1055)
Q Consensus 801 SP~~~~~~ETLsTL~FA~Rak 821 (1055)
||...+++||++||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999984
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.5e-67 Score=591.68 Aligned_cols=322 Identities=48% Similarity=0.755 Sum_probs=287.2
Q ss_pred CEEEEeecCCCCCcccCCCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcce
Q 001550 495 NIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNV 573 (1055)
Q Consensus 495 nIRV~~RVRP~~~~E~~~~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~ 573 (1055)
+|+|||||||+...+......+..+.+++.+++.+|........+.|.||+||+++++|++||+. +.|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 69999999999877643344444444557788877654334456899999999999999999998 58999999999999
Q ss_pred eEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccC-CceEEEEEEEEEEecceeeeccCCCCCCccccc
Q 001550 574 CIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN-SILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGI 652 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i 652 (1055)
||||||||||||||||+|+ ..++||+||++++||..+..... ...|.|.+||+|||+|+|+|||++......+.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i 156 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGS----PKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156 (328)
T ss_pred eEEEecCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence 9999999999999999995 47899999999999998876653 567999999999999999999998643445555
Q ss_pred ccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCCc--EEEeeeEEEec
Q 001550 653 WNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGA--ILRGSLHLIDL 730 (1055)
Q Consensus 653 ~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~--~~~skL~LVDL 730 (1055)
+.+. .++.++.+++...+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|...+..... ...|+|+||||
T Consensus 157 ~~~~-~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDL 235 (328)
T cd00106 157 REDP-KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDL 235 (328)
T ss_pred EEcC-CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEEC
Confidence 5433 37788999999999999999999999999999999999999999999999999998876654 78999999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC--CCccccCchhhhhhhhccCCCcccceeEecCCCCCCHH
Q 001550 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN--PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1055)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~ 808 (1055)
||+|+....+..+.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||||+|||+++|+||+||+|...+++
T Consensus 236 aGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~ 315 (328)
T cd00106 236 AGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYD 315 (328)
T ss_pred CCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHH
Confidence 9999999999999999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhc
Q 001550 809 ETISTLKFAERVS 821 (1055)
Q Consensus 809 ETLsTL~FA~Rak 821 (1055)
||++||+||+|++
T Consensus 316 eTl~tL~~a~r~~ 328 (328)
T cd00106 316 ETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=7.6e-67 Score=588.14 Aligned_cols=326 Identities=46% Similarity=0.722 Sum_probs=290.9
Q ss_pred CEEEEeecCCCCCcccC--CCccEEEeCCCC-eEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001550 495 NIRVYCRIRPFLPGQSK--KQTTIEYIGENG-ELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1055)
Q Consensus 495 nIRV~~RVRP~~~~E~~--~~~~v~~~~~~~-~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1055)
+|+|+|||||+...|.. ....+.+.+.++ .+++.++.. ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN--RKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC--CCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 69999999999887643 344555555443 566665532 2345789999999999999999998 58999999999
Q ss_pred cceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001550 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1055)
+|+||||||+|||||||||+|+ ..++||+||++++||..+........|.|+|||+|||+|+|+|||++.. ..+
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~--~~l 152 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGT----PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSP--KKL 152 (335)
T ss_pred CceeEEEeCCCCCCCceEecCC----CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCC--CCc
Confidence 9999999999999999999995 4678999999999999988777778899999999999999999998763 344
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeE--ecCCCcEEEeeeEEE
Q 001550 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT--DLKNGAILRGSLHLI 728 (1055)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~--~~~~~~~~~skL~LV 728 (1055)
.+.. +..+++++.++++..+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+. +...+....|+|+||
T Consensus 153 ~i~~-~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~V 231 (335)
T smart00129 153 EIRE-DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLV 231 (335)
T ss_pred EEEE-CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEE
Confidence 5544 3457889999999999999999999999999999999999999999999999999976 455667889999999
Q ss_pred ecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc--CCCCccccCchhhhhhhhccCCCcccceeEecCCCCCC
Q 001550 729 DLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH--KNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1055)
Q Consensus 729 DLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~--k~~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~ 806 (1055)
||||+||..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||...+
T Consensus 232 DLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~ 311 (335)
T smart00129 232 DLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSN 311 (335)
T ss_pred ECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccc
Confidence 9999999999999999999999999999999999999998 67799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccccccccc
Q 001550 807 YSETISTLKFAERVSGVELGAAR 829 (1055)
Q Consensus 807 ~~ETLsTL~FA~Rak~I~~~~~k 829 (1055)
++||++||+||+++++|+++|.+
T Consensus 312 ~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 312 LEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred hHHHHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999988754
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1e-67 Score=594.77 Aligned_cols=321 Identities=43% Similarity=0.678 Sum_probs=276.2
Q ss_pred ecCCCCCcccCCCccE--EEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcceeEEe
Q 001550 501 RIRPFLPGQSKKQTTI--EYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFA 577 (1055)
Q Consensus 501 RVRP~~~~E~~~~~~v--~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~~IfA 577 (1055)
||||+++.|....... ......................+.|.||+||+++++|++||+. +.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 8999998876544332 2221111111111112223456789999999999999999998 699999999999999999
Q ss_pred ecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCC--ceEEEEEEEEEEecceeeeccCCCC--CCcccccc
Q 001550 578 YGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNS--ILYEVGVQMVEIYNEQVRDLLSSDG--PQRRLGIW 653 (1055)
Q Consensus 578 YGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~--~~~~V~vS~lEIYnE~V~DLL~~~~--~~~~l~i~ 653 (1055)
||||||||||||+|+ ....++||+||++++||..++..... +.|.|+|||+|||||+|+|||++.. ....+.++
T Consensus 81 yG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred ecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 999999999999995 23678999999999999999876654 7899999999999999999999874 33456777
Q ss_pred cccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCCc----EEEeeeEEEe
Q 001550 654 NATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGA----ILRGSLHLID 729 (1055)
Q Consensus 654 ~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~----~~~skL~LVD 729 (1055)
.+...|.+.+.+++.+.+.+++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+.+...+. ...|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 666555689999999999999999999999999999999999999999999999999998877654 4789999999
Q ss_pred cCCCccccCCcch-hhhHHHHHHHhHhHHHHHHHHHHHhcC--CCCccccCchhhhhhhhccCCCcccceeEecCCCCCC
Q 001550 730 LAGSERVDRSEAT-GDRLREAQHINKSLSALGDVIFALAHK--NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1055)
Q Consensus 730 LAGSER~~ks~~~-g~rlkEa~~INkSLsaLg~VI~aLa~k--~~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~ 806 (1055)
|||+|+..+.... +.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||...+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 9999999988864 889999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccc
Q 001550 807 YSETISTLKFAERVSGV 823 (1055)
Q Consensus 807 ~~ETLsTL~FA~Rak~I 823 (1055)
++||++||+||++++.|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999986
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-63 Score=579.17 Aligned_cols=331 Identities=38% Similarity=0.614 Sum_probs=287.7
Q ss_pred hccCCEEEEeecCCCCCcccCCCccEEEeCCCCeEEEeCCCC-------CCCCCceeeeeceeeCCCCChHHHHhc-hHH
Q 001550 491 DLKGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLK-------QGKDNHRLFKFNKVFGPEASQEEVFLD-TRP 562 (1055)
Q Consensus 491 elKGnIRV~~RVRP~~~~E~~~~~~v~~~~~~~~~vi~~p~~-------~~~~~~k~F~FD~VF~~~atQeeVf~~-~~p 562 (1055)
+++..|.|||||||+.+ ..+...++.++ ++.++++..|.. ++....+.|.|-+||+|+++|.+||.. +.|
T Consensus 28 ~~~d~v~v~~rvrP~~~-~~~~~g~l~v~-n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD-ASEDEGCLRVI-NEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCC-CccccceEEEe-ccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 45789999999999886 33444556555 445666665532 333455789999999999999999998 599
Q ss_pred HHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhc-------------------------
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESR------------------------- 617 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~------------------------- 617 (1055)
+|.+++.|-|..+|+||.|||||||||+|+ +.++||+||+++-||..++.+
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~----~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL 181 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGT----PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALL 181 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecC----CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999994 578899999999999765531
Q ss_pred ---------------------------------------cCCceEEEEEEEEEEecceeeeccCCCCCCcc---cccccc
Q 001550 618 ---------------------------------------KNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR---LGIWNA 655 (1055)
Q Consensus 618 ---------------------------------------~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~---l~i~~~ 655 (1055)
..++.|.|+|||+|||||-|||||.+.+.... +.+...
T Consensus 182 ~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~ 261 (809)
T KOG0247|consen 182 QLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLRE 261 (809)
T ss_pred hhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhh
Confidence 02356999999999999999999987654322 234555
Q ss_pred cCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecC--CCcEEEeeeEEEecCCC
Q 001550 656 TLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK--NGAILRGSLHLIDLAGS 733 (1055)
Q Consensus 656 ~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~--~~~~~~skL~LVDLAGS 733 (1055)
+..+..++.+++++.|++.+|+++++..|.++|.+++|.+|..|||||+||+|.+.+.... ++.+..|.|.|||||||
T Consensus 262 d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGS 341 (809)
T KOG0247|consen 262 DTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGS 341 (809)
T ss_pred ccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccc
Confidence 6678889999999999999999999999999999999999999999999999999876655 56788999999999999
Q ss_pred ccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC-----CCCccccCchhhhhhhhccCCCcccceeEecCCCCCCHH
Q 001550 734 ERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK-----NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1055)
Q Consensus 734 ER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-----~~hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~ 808 (1055)
||..++++.|.||+||.+||.||.+||.||.+|..+ +.+||||+||||+++|.+|.|..|.+||+||+|...+|+
T Consensus 342 ERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~Yd 421 (809)
T KOG0247|consen 342 ERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYD 421 (809)
T ss_pred hhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHH
Confidence 999999999999999999999999999999999853 368999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhccccccc
Q 001550 809 ETISTLKFAERVSGVELGA 827 (1055)
Q Consensus 809 ETLsTL~FA~Rak~I~~~~ 827 (1055)
|+++.|+||.-+..|.+..
T Consensus 422 Enl~vlkFaeiaq~v~v~~ 440 (809)
T KOG0247|consen 422 ENLNVLKFAEIAQEVEVAR 440 (809)
T ss_pred HHHHHHHHHHhcccccccC
Confidence 9999999999999987543
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-63 Score=560.08 Aligned_cols=326 Identities=35% Similarity=0.500 Sum_probs=278.0
Q ss_pred CCEEEEeecCCCCCcccCCC-ccEEEeCCCCeEEEeCCCCCCCC-----CceeeeeceeeCCCCChHHHHhc-hHHHHHH
Q 001550 494 GNIRVYCRIRPFLPGQSKKQ-TTIEYIGENGELVVSNPLKQGKD-----NHRLFKFNKVFGPEASQEEVFLD-TRPLIRS 566 (1055)
Q Consensus 494 GnIRV~~RVRP~~~~E~~~~-~~v~~~~~~~~~vi~~p~~~~~~-----~~k~F~FD~VF~~~atQeeVf~~-~~pLV~s 566 (1055)
..|-|+||-||++..|.... ..|..++..+.+++..|. ...+ ..+.|.||++||..++++.||.. ++|||..
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk-~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPK-LKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccc-cccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 46999999999988775432 234444455566665543 2222 23579999999999999999987 6999999
Q ss_pred hhcCcceeEEeecccCCCcceeeecCCCCCC--CccchhHHHHHHHHHHHHh-ccCCceEEEEEEEEEEecceeeeccCC
Q 001550 567 VLDGYNVCIFAYGQTGSGKTYTMSGPCISST--EDWGVNYRALNDLFEISES-RKNSILYEVGVQMVEIYNEQVRDLLSS 643 (1055)
Q Consensus 567 vLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~--~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~V~DLL~~ 643 (1055)
+|+|--+|+||||||||||||||-|+..+.. ...||..++.+|+|..+.. ......+.|+++|+|||+.+|||||+.
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 9999999999999999999999999765433 3469999999999998765 234567899999999999999999987
Q ss_pred CCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEecCCCcEEEe
Q 001550 644 DGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRG 723 (1055)
Q Consensus 644 ~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s 723 (1055)
.. ++.+. ++....+.+-++.+..|...+||+++|+.|+.-|+.+.|..|+.|||||+||+|.+... .+...+|
T Consensus 367 k~---KLrvL-EDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~---~~~k~hG 439 (676)
T KOG0246|consen 367 KK---KLRVL-EDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH---GEFKLHG 439 (676)
T ss_pred cc---ceEEe-ecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC---CcceeEe
Confidence 43 33333 34456778889999999999999999999999999999999999999999999999643 2357889
Q ss_pred eeEEEecCCCcc-ccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccccCchhhhhhhhccCC-CcccceeEecC
Q 001550 724 SLHLIDLAGSER-VDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGG-QAKTLMMVQLN 801 (1055)
Q Consensus 724 kL~LVDLAGSER-~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGG-nskTlmI~~IS 801 (1055)
++.||||||+|| ++.+.+..+...||+.|||||+||..||.||.+.+.|+|||.||||++|+|||-| |++|+||+|||
T Consensus 440 KfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~IS 519 (676)
T KOG0246|consen 440 KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATIS 519 (676)
T ss_pred EEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeC
Confidence 999999999999 5666777788899999999999999999999999999999999999999999988 99999999999
Q ss_pred CCCCCHHHHHHHHHHHhHhccccccc
Q 001550 802 PDVDSYSETISTLKFAERVSGVELGA 827 (1055)
Q Consensus 802 P~~~~~~ETLsTL~FA~Rak~I~~~~ 827 (1055)
|...+.+.||+|||||.|||......
T Consensus 520 Pg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 520 PGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred CCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999876443
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-63 Score=588.39 Aligned_cols=342 Identities=34% Similarity=0.541 Sum_probs=289.3
Q ss_pred cCCCCCcccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcceeEEee
Q 001550 502 IRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAY 578 (1055)
Q Consensus 502 VRP~~~~E~~~--~~~v~~~~~~~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~~IfAY 578 (1055)
|||+...+... ..++.+.+.+.++++. +..+|+||+||+....|.++|+. +.|+++.+++|||+|++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig--------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG--------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec--------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 68987766533 3345555555566553 34689999999999999999998 6999999999999999999
Q ss_pred cccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcccccccccCC
Q 001550 579 GQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLP 658 (1055)
Q Consensus 579 GQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~ 658 (1055)
|||||||||||.+.+.....+.|+|||++.++|..+..... ..|.|.|+|+|||++.|+|||.|......+.+ ....
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~--~e~~ 149 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKL--REPK 149 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceec--cccC
Confidence 99999999999886544444479999999999999887654 78999999999999999999996543333333 3344
Q ss_pred CceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEec-CCCcEEEeeeEEEecCCCcccc
Q 001550 659 NGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL-KNGAILRGSLHLIDLAGSERVD 737 (1055)
Q Consensus 659 g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~~skL~LVDLAGSER~~ 737 (1055)
|.+.+.+++...+....+++..+..|.-.|++++|+||+.|||||+|||+.+.+... ......+++|||||||||||.+
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence 778888999999999999999999999999999999999999999999999986432 3344678999999999999999
Q ss_pred CCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCC--CccccCchhhhhhhhccCCCcccceeEecCCCCCCHHHHHHHHH
Q 001550 738 RSEATGDRLREAQHINKSLSALGDVIFALAHKNP--HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLK 815 (1055)
Q Consensus 738 ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~--hVPYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~ETLsTL~ 815 (1055)
++++.|+|++|+.+||.+|++||+||+||..... |||||+|||||||||+||||++|+||+||||+..+++||++||+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 9999999999999999999999999999997665 99999999999999999999999999999999999999999999
Q ss_pred HHhHhccccccccccCCC-cchHHHHHHHHHHHHHHHHHH
Q 001550 816 FAERVSGVELGAARSNKE-GSDVRELMEQVGSLKDIITKK 854 (1055)
Q Consensus 816 FA~Rak~I~~~~~k~~~~-~~~v~eL~~qv~~Lk~~i~~~ 854 (1055)
||.|++.|++.++.++.. ...+..|+.|+..|+..+..+
T Consensus 310 ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~ 349 (913)
T KOG0244|consen 310 YADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSK 349 (913)
T ss_pred HhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998876622 223455555555555555443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.6e-59 Score=552.92 Aligned_cols=310 Identities=40% Similarity=0.613 Sum_probs=275.4
Q ss_pred ceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHh
Q 001550 538 HRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISES 616 (1055)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~ 616 (1055)
..+|.||+||++.++|++||+. +.|+++++++|||+||||||||||||||||.|. ..++||||+++.+||+.++.
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~----~~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGT----EEEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecC----ccccchHHHHHHHHHHHHHh
Confidence 5679999999999999999988 699999999999999999999999999999994 47899999999999999988
Q ss_pred ccCCceEEEEEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCc
Q 001550 617 RKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALN 696 (1055)
Q Consensus 617 ~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N 696 (1055)
......|.|.+||+|||||+++|||.+.... .....+..+++++.+++...+.+.+|++.+|..|..+|.++.|.+|
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~---~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n 207 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNEES---LNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEIN 207 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCcccc---ccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhc
Confidence 7777789999999999999999999987543 2233455677888889999999999999999999999999999999
Q ss_pred CCCCCcccEEEEEEEeEecCCCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc--CCCCcc
Q 001550 697 ERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH--KNPHVP 774 (1055)
Q Consensus 697 ~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~--k~~hVP 774 (1055)
..|||||+||++++.+.+...+....++|+||||||||++..++..+.|++|+..||+||.+||+||.+|.. +..|||
T Consensus 208 ~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ip 287 (568)
T COG5059 208 DESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIP 287 (568)
T ss_pred cccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccc
Confidence 999999999999999998877777778999999999999999999999999999999999999999999997 788999
Q ss_pred ccCchhhhhhhhccCCCcccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccC--CCcchHHHHHHHHHHHHHHHH
Q 001550 775 YRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSN--KEGSDVRELMEQVGSLKDIIT 852 (1055)
Q Consensus 775 YRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~ETLsTL~FA~Rak~I~~~~~k~~--~~~~~v~eL~~qv~~Lk~~i~ 852 (1055)
||+||||||||++|||+++|+|||||+|...+++||.+||+||.|+++|++.+.... .....+.++..++...++.+.
T Consensus 288 yReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 367 (568)
T COG5059 288 YRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIE 367 (568)
T ss_pred hhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999987765542 123334444444444444444
Q ss_pred HH
Q 001550 853 KK 854 (1055)
Q Consensus 853 ~~ 854 (1055)
.+
T Consensus 368 ~~ 369 (568)
T COG5059 368 IL 369 (568)
T ss_pred hH
Confidence 33
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.1e-49 Score=412.33 Aligned_cols=176 Identities=57% Similarity=0.881 Sum_probs=167.6
Q ss_pred HHhchHHHHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecc
Q 001550 556 VFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNE 635 (1055)
Q Consensus 556 Vf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE 635 (1055)
||+.+.|+|+.+++|||+||||||||||||||||+|+ ..++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~----~~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGK----REGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCC----CCCCCcchHHHHH--------------------------
Confidence 9998669999999999999999999999999999995 3788999999987
Q ss_pred eeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeEec
Q 001550 636 QVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL 715 (1055)
Q Consensus 636 ~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~ 715 (1055)
++.++..|.++|+++.|.+|+.|||||+||+|+|.+.+.
T Consensus 58 -----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~ 96 (186)
T cd01363 58 -----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNA 96 (186)
T ss_pred -----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeec
Confidence 788999999999999999999999999999999998776
Q ss_pred CC---CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccccCchhhhhhhhccCCCc
Q 001550 716 KN---GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQA 792 (1055)
Q Consensus 716 ~~---~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGns 792 (1055)
.. +....++|+||||||||+.++++..+++++|+..||+||++|++||.+|++++.|||||+||||+||||+|||||
T Consensus 97 ~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~ 176 (186)
T cd01363 97 LASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNS 176 (186)
T ss_pred CCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCC
Confidence 55 567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEecCC
Q 001550 793 KTLMMVQLNP 802 (1055)
Q Consensus 793 kTlmI~~ISP 802 (1055)
+|+||+||||
T Consensus 177 ~t~~i~~vsP 186 (186)
T cd01363 177 RTLMVACISP 186 (186)
T ss_pred eEEEEEEeCc
Confidence 9999999998
No 30
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.91 E-value=2.1e-24 Score=221.55 Aligned_cols=124 Identities=26% Similarity=0.383 Sum_probs=110.4
Q ss_pred CccCCCCCcHhhhhHhhcccChhhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcccC----C
Q 001550 8 VFDHSTGTPAENIEALDNMAEGNQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMG----A 83 (1055)
Q Consensus 8 ~~~~~~~~s~~~~~~~~~~~~~~r~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~k~----~ 83 (1055)
.=+|+||++++...+.+++++++.+.|+++||+.++. ..+ +...+|.++|+||+|||+|+|+|.||++++. +
T Consensus 3 n~~~~~gl~~~v~~k~~~k~~~~~~~el~~WI~~~~~-~~~---~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~ 78 (193)
T KOG2046|consen 3 NRGPSYGLSREVQQKIESKYDDELEKELREWIENVVL-TEL---PARGDFQDLLKDGVILCKLINKLYPGVVKKINESKM 78 (193)
T ss_pred CCCCccchHHHHHHHhhcccCHHHHHHHHHHHHHhhc-cCC---CcccCHHHHHcchHHHHHHHHHhCcCcccccccccc
Confidence 4579999999999999999999999999999999754 222 1234699999999999999999999888544 4
Q ss_pred CCCCCcccHHHHHHHHHhCCCCC---Cccccc-cCCCchHHHHHHHHHHhhhhccCC
Q 001550 84 NFEPGPANVKRFLAAMDDMGLPR---FELSDL-EQGNMAPVLQCLRSLRASFSFCDE 136 (1055)
Q Consensus 84 ~~~~~~eNI~~FL~a~~~~Glp~---Fe~~DL-E~kn~~~Vv~cL~aL~~~~~~k~~ 136 (1055)
+|.+ ||||++|++||+.+||++ |+++|| |.+|+.+|+.||++|.+++..++.
T Consensus 79 ~f~q-mEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~~ 134 (193)
T KOG2046|consen 79 AFVQ-MENISNFIKAAKKYGVPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKGL 134 (193)
T ss_pred cHHH-HHHHHHHHHHHHhcCCChhhcccccccccCCCHHHHHHHHHHHHHHHhhccc
Confidence 5666 999999999999999999 999999 999999999999999999998863
No 31
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.74 E-value=2.4e-18 Score=168.59 Aligned_cols=110 Identities=24% Similarity=0.358 Sum_probs=97.1
Q ss_pred hhcccChhhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc---ccCCCCCCCcccHHHHHHHH
Q 001550 23 LDNMAEGNQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV---EMGANFEPGPANVKRFLAAM 99 (1055)
Q Consensus 23 ~~~~~~~~r~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv---~k~~~~~~~~eNI~~FL~a~ 99 (1055)
.+...-++..+|+..||+.+++ ..+.+. .||.++|+||++||+++|...|+.| .++++|.| ||||..|+.+.
T Consensus 6 ~~~~~~~~~~kev~~Wie~~l~-~k~~pp---gdll~~lkdGv~lCril~ea~~~~I~yKeSkmpFVQ-menIs~Fin~~ 80 (178)
T COG5199 6 NRCPGMDKQQKEVTLWIETVLG-EKFEPP---GDLLSLLKDGVRLCRILNEASPLDIKYKESKMPFVQ-MENISSFINGL 80 (178)
T ss_pred ccCCCCHHHHHHHHHHHHHHHH-hhhCCc---ccHHHHHhcchHHHHHHhhcCcccceecccCCceee-HHHHHHHHHHH
Confidence 3456667899999999999999 555332 2699999999999999999999999 35688888 99999999999
Q ss_pred HhCCCCC---Cccccc-cCCCchHHHHHHHHHHhhhhccCCC
Q 001550 100 DDMGLPR---FELSDL-EQGNMAPVLQCLRSLRASFSFCDEE 137 (1055)
Q Consensus 100 ~~~Glp~---Fe~~DL-E~kn~~~Vv~cL~aL~~~~~~k~~g 137 (1055)
++++||+ |+|+|| |.+|..+|+.||++|.+|+..+-.+
T Consensus 81 ~k~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~ 122 (178)
T COG5199 81 KKLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMF 122 (178)
T ss_pred HHhCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999 999999 9999999999999999999977433
No 32
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.54 E-value=8.7e-15 Score=138.00 Aligned_cols=98 Identities=32% Similarity=0.486 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcccCC----CCCCCcccHHHHHHHHHhCCCCC
Q 001550 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGA----NFEPGPANVKRFLAAMDDMGLPR 106 (1055)
Q Consensus 31 r~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~k~~----~~~~~~eNI~~FL~a~~~~Glp~ 106 (1055)
+++++.+||+.+++ ...+ ....+|...|+||++||+|+|.+.|+.++... ..+..++||..||.+|+.+|+|.
T Consensus 2 ~~~~l~~Win~~l~-~~~~--~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~ 78 (107)
T cd00014 2 QKEELLRWINKVLG-EYGP--VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPV 78 (107)
T ss_pred hHHHHHHHHHHHhc-cCCC--ccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCce
Confidence 56789999999999 3332 35678999999999999999999999996442 23444789999999999999999
Q ss_pred --Cccccc-cCCCchHHHHHHHHHHhhh
Q 001550 107 --FELSDL-EQGNMAPVLQCLRSLRASF 131 (1055)
Q Consensus 107 --Fe~~DL-E~kn~~~Vv~cL~aL~~~~ 131 (1055)
|++.|| +.+|..+|+.||++|..++
T Consensus 79 ~~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 79 VNFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred eccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 999999 7999999999999999876
No 33
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.42 E-value=2.6e-13 Score=161.29 Aligned_cols=102 Identities=29% Similarity=0.554 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcccC-----CCCCCCcccHHHHHHHHHhCCC
Q 001550 30 NQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMG-----ANFEPGPANVKRFLAAMDDMGL 104 (1055)
Q Consensus 30 ~r~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~k~-----~~~~~~~eNI~~FL~a~~~~Gl 104 (1055)
=|-.||+.||+++++ ..+| +..|.+.||+||+|++|..+++|..+..+ ..|.+ ..||+.||..+..+||
T Consensus 44 CRv~EaK~WIee~~~-~~l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrH-tdNIN~Fld~i~~vGl 117 (1054)
T COG5261 44 CRVSEAKIWIEEVIE-EALP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRH-TDNINAFLDLIEHVGL 117 (1054)
T ss_pred HhHHHHHHHHHHHhc-cCCc----hhhHHHHHhccchHHHHHHHhCCCceeEeeecccceeec-cccHHHHHhHhhhcCC
Confidence 577899999999999 7776 55799999999999999999999988443 34555 8899999999999999
Q ss_pred CC---Cccccc-cCCCchHHHHHHHHHHhhhhccCCC
Q 001550 105 PR---FELSDL-EQGNMAPVLQCLRSLRASFSFCDEE 137 (1055)
Q Consensus 105 p~---Fe~~DL-E~kn~~~Vv~cL~aL~~~~~~k~~g 137 (1055)
|+ |+..|| |+||+++|+.|||||.++..|+|-.
T Consensus 118 Pe~FhFEl~DlYekKN~pkViyciHaL~~~ls~~g~t 154 (1054)
T COG5261 118 PESFHFELQDLYEKKNIPKVIYCIHALISMLSWPGKT 154 (1054)
T ss_pred cceeeeehHhhhccCCcchhHHHHHHHHHHhcCCCCC
Confidence 99 999999 9999999999999999999999744
No 34
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.42 E-value=2.6e-13 Score=169.12 Aligned_cols=138 Identities=20% Similarity=0.331 Sum_probs=102.2
Q ss_pred CCCCCccCCCCCcHhhhhHhhcccChh-----------hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHh
Q 001550 4 DENGVFDHSTGTPAENIEALDNMAEGN-----------QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLN 72 (1055)
Q Consensus 4 ~~~g~~~~~~~~s~~~~~~~~~~~~~~-----------r~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N 72 (1055)
+..+...|+||..-....-.++-.+.+ |-.||+.||++++| +++|++ .+|.++|||||+|++|.|
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~rr~~~vaYeyLCr~eE~k~W~e~cl~-edL~pt---tele~~LRNGV~LAkL~~ 80 (1401)
T KOG2128|consen 5 SGLNILRPSYGSIVDSESSSAEEMDERREQNVAYEYLCRVEEAKRWIEECLG-EDLPPT---TELEEGLRNGVYLAKLGQ 80 (1401)
T ss_pred ccccccCCCCCCCCCCccchHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhc-ccCCCc---hHHHHHhhhhhHHHHHHh
Confidence 345566666664433332222222222 45699999999999 778755 369999999999999999
Q ss_pred hhcCCCcccC-----CCCCCCcccHHHHHHHHHhCCCCC---Cccccc-cCCCchHHHHHHHHHHhhhhccCCCCccccc
Q 001550 73 KLSPDSVEMG-----ANFEPGPANVKRFLAAMDDMGLPR---FELSDL-EQGNMAPVLQCLRSLRASFSFCDEEDTIQDH 143 (1055)
Q Consensus 73 ~l~Pgsv~k~-----~~~~~~~eNI~~FL~a~~~~Glp~---Fe~~DL-E~kn~~~Vv~cL~aL~~~~~~k~~g~~~~~~ 143 (1055)
.+.|..--.+ ..|. +..||..||.|++.+|||+ |++.|+ |++||+ |+.|||||..|.. |.|..++...
T Consensus 81 ~f~PD~~~~~~~~~~~~fr-HtdNi~q~~~~me~iglP~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~-k~~~aP~l~~ 157 (1401)
T KOG2128|consen 81 FFAPDLEQTIYKANDLHFR-HTDNINQWLRAMESIGLPEIFYPETTDVYEGKNIP-VIYCIHALSLYLF-KQGKAPPLQN 157 (1401)
T ss_pred hcCCcceeeeeecCCceee-cchhHHHHHHHHhhcCCCcccccchhhhhcCCCCc-eeeHHHHHHHHHh-cCCCCccccc
Confidence 9999544211 1244 4899999999999999999 999999 999999 9999999977665 5777766655
Q ss_pred ccccc
Q 001550 144 YRKRW 148 (1055)
Q Consensus 144 ~~~~~ 148 (1055)
..|.-
T Consensus 158 ~~gk~ 162 (1401)
T KOG2128|consen 158 LSGKV 162 (1401)
T ss_pred ccccC
Confidence 54443
No 35
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.28 E-value=3.4e-12 Score=120.45 Aligned_cols=99 Identities=28% Similarity=0.441 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc-cCCCC-----CCCcccHHHHHHHHHh-CCC
Q 001550 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE-MGANF-----EPGPANVKRFLAAMDD-MGL 104 (1055)
Q Consensus 32 ~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~-k~~~~-----~~~~eNI~~FL~a~~~-~Gl 104 (1055)
+.++..||+.+++... ......+|.+.|+||++||+|+|++.|+.++ +..+. +..++||..|+.+|++ +|+
T Consensus 1 e~~ll~Win~~l~~~~--~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~ 78 (108)
T PF00307_consen 1 EKELLKWINSHLEKYG--KGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGI 78 (108)
T ss_dssp HHHHHHHHHHHHTTST--TTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHccccc--CCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCC
Confidence 4679999999998441 1112236899999999999999999999883 22311 2347899999999988 999
Q ss_pred CC-Cccccc-cCCCchHHHHHHHHHHhhhh
Q 001550 105 PR-FELSDL-EQGNMAPVLQCLRSLRASFS 132 (1055)
Q Consensus 105 p~-Fe~~DL-E~kn~~~Vv~cL~aL~~~~~ 132 (1055)
|. +.+.|| +++|...|+.||.+|..+++
T Consensus 79 ~~~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 79 PPLLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp SCTS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 99 999999 79999999999999999875
No 36
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.28 E-value=4e-12 Score=118.77 Aligned_cols=93 Identities=29% Similarity=0.366 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcccCCC-----CCCCcccHHHHHHHHHhCCCCC
Q 001550 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGAN-----FEPGPANVKRFLAAMDDMGLPR 106 (1055)
Q Consensus 32 ~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~k~~~-----~~~~~eNI~~FL~a~~~~Glp~ 106 (1055)
+.++..|++.+++. .. ....++|...|+||++||+|+|.+.|+.+++... .++.++||+.||.+|+++|...
T Consensus 2 ~~~l~~Win~~l~~-~~--~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~ 78 (103)
T smart00033 2 EKTLLRWVNSLLAE-YG--KPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKL 78 (103)
T ss_pred hHHHHHHHHHHccc-CC--CCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCee
Confidence 56899999999993 32 2345689999999999999999999999965421 1334689999999999999533
Q ss_pred --Cccccc-cC-CCchHHHHHHHHH
Q 001550 107 --FELSDL-EQ-GNMAPVLQCLRSL 127 (1055)
Q Consensus 107 --Fe~~DL-E~-kn~~~Vv~cL~aL 127 (1055)
|++.|| ++ +++..|+.||+.+
T Consensus 79 ~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 79 VLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred eccCHHHHhhcchHHHHHHHHHHhC
Confidence 999999 77 6899999999864
No 37
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=99.07 E-value=1.9e-10 Score=132.72 Aligned_cols=102 Identities=28% Similarity=0.515 Sum_probs=81.6
Q ss_pred hHHHHHHHHHH--hcCCC-CCCC-CccHHHHHHHchhhHHHHHHHhhhcCCCcc-cCCCCCCCcc------cHHHHHHHH
Q 001550 31 QLSTLVEWLNE--MIPHI-HLPF-EASEEKLRACLVDGTVLCLVLNKLSPDSVE-MGANFEPGPA------NVKRFLAAM 99 (1055)
Q Consensus 31 r~~e~~~WIe~--vlg~~-~lp~-~~s~edf~~~LrDGviLC~L~N~l~Pgsv~-k~~~~~~~~e------NI~~FL~a~ 99 (1055)
.+..+..||.. |++.. ...+ .+..-||+.+|||||+||.|+|.|.|++|. |.+++.++|. ||+.||.+|
T Consensus 3 lWrqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C 82 (865)
T KOG2996|consen 3 LWRQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFC 82 (865)
T ss_pred HHHHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHH
Confidence 56789999985 44411 1222 355678999999999999999999999994 5555544454 999999999
Q ss_pred -HhCCCCC---Cccccc-cCCCchHHHHHHHHHHhhhh
Q 001550 100 -DDMGLPR---FELSDL-EQGNMAPVLQCLRSLRASFS 132 (1055)
Q Consensus 100 -~~~Glp~---Fe~~DL-E~kn~~~Vv~cL~aL~~~~~ 132 (1055)
+.+||.+ |++.|| +-.++.+|+.+|..|.....
T Consensus 83 ~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~i 120 (865)
T KOG2996|consen 83 CEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPI 120 (865)
T ss_pred HHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccChH
Confidence 8999999 999999 99999999999998865433
No 38
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.03 E-value=1.8e-12 Score=156.41 Aligned_cols=271 Identities=28% Similarity=0.308 Sum_probs=178.1
Q ss_pred HHHhhhhhhhhhhccCCEEEEeecCCCCCcccCCCccEEEeCCC----CeEEEeCCCCCCCCCceeeeeceeeCCCCChH
Q 001550 479 LAENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQTTIEYIGEN----GELVVSNPLKQGKDNHRLFKFNKVFGPEASQE 554 (1055)
Q Consensus 479 l~erRkL~N~vqelKGnIRV~~RVRP~~~~E~~~~~~v~~~~~~----~~~vi~~p~~~~~~~~k~F~FD~VF~~~atQe 554 (1055)
...+|.|++.++..+ +++|+|+|+|......+...+..+.... +.+....+ .+.......|.||.+|.+...+.
T Consensus 291 skLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~ 368 (568)
T COG5059 291 SKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIEI 368 (568)
T ss_pred hHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-CcchHHHHHHHhhhhhhhhhhhh
Confidence 346899999999998 9999999999876533322222222111 11111111 11112335699999999999999
Q ss_pred HHHhchHHHHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhc-cCCceEEEEEEEEEEe
Q 001550 555 EVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESR-KNSILYEVGVQMVEIY 633 (1055)
Q Consensus 555 eVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIY 633 (1055)
.++..+..+++..++| +++||++++|+++||.- ...++..-.+...|...... ...|.|...+.++++|
T Consensus 369 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 438 (568)
T COG5059 369 LVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS------RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIE 438 (568)
T ss_pred HHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc------hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999964 34466666667777655432 3456677777777777
Q ss_pred cceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCcccEEEEEEEeE
Q 001550 634 NEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT 713 (1055)
Q Consensus 634 nE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~ 713 (1055)
-....++.....+.....+.....-........+... ....+..... .+...+..+++..|.+++++|++|..+..+.
T Consensus 439 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 516 (568)
T COG5059 439 IDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIP-EETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGS 516 (568)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcc-hhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccch
Confidence 3333333322111111000000000000000111111 1112222222 5678888999999999999999999888655
Q ss_pred ecCCCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHh
Q 001550 714 DLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALA 767 (1055)
Q Consensus 714 ~~~~~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa 767 (1055)
....+... ++.|||||+||. -+...|.++++...+|++|..+|++|.++.
T Consensus 517 ~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 517 NSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 44333332 899999999999 999999999999999999999999998864
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=5e-10 Score=130.74 Aligned_cols=101 Identities=27% Similarity=0.353 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcccCCC-----CCCCc----ccHHHHHHHHH
Q 001550 30 NQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGAN-----FEPGP----ANVKRFLAAMD 100 (1055)
Q Consensus 30 ~r~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~k~~~-----~~~~~----eNI~~FL~a~~ 100 (1055)
+.+.|++.-+++++. ..+- ..-++||.++|.||||||+|+|.|+|.+|+.+.. .+-.| -||.+||.||+
T Consensus 572 ~eE~eL~~QLRk~iE-tRLk-~sLp~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCR 649 (722)
T KOG0532|consen 572 REEKELMLQLRKLIE-TRLK-VSLPEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACR 649 (722)
T ss_pred hHHHHHHHHHHHHHH-HHhc-ccCchhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHH
Confidence 455567777777765 2221 1233579999999999999999999999965422 12222 29999999999
Q ss_pred hCCCCC---Cccccc-cC--CCchHHHHHHHHHHhhhh
Q 001550 101 DMGLPR---FELSDL-EQ--GNMAPVLQCLRSLRASFS 132 (1055)
Q Consensus 101 ~~Glp~---Fe~~DL-E~--kn~~~Vv~cL~aL~~~~~ 132 (1055)
+||||+ +...|+ .+ ++..+|+.++++++..+.
T Consensus 650 kiGVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~a~ 687 (722)
T KOG0532|consen 650 KIGVPEADLCSPMDILQKIERNPRKVARTVLTVGKKAQ 687 (722)
T ss_pred HcCCChHhhcCHHHhhhhhcccchhHHHHHHhhccccC
Confidence 999999 889999 44 799999999998865443
No 40
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.65 E-value=3.1e-05 Score=90.30 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=87.0
Q ss_pred CCCCcHhhhhHhhcccChhhHHHHHHHHHHhcCCC-----CCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc------
Q 001550 12 STGTPAENIEALDNMAEGNQLSTLVEWLNEMIPHI-----HLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE------ 80 (1055)
Q Consensus 12 ~~~~s~~~~~~~~~~~~~~r~~e~~~WIe~vlg~~-----~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~------ 80 (1055)
..|.+..+.+.....+.+..+.+-+.||...++.. -+|.+|...+|.+..+||++||+++|-=.||.|.
T Consensus 101 ~~~~~~~sst~~~Hti~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~ 180 (627)
T KOG0046|consen 101 ASGTLKGSSTGTQHTINEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINT 180 (627)
T ss_pred ccceeecccccceeeecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhcc
Confidence 34455556666678888899999999999999844 4578888899999999999999999999999992
Q ss_pred -cCCCCCCCcccHHHHHHHHHhCCCCC--Cccccc-cCCC
Q 001550 81 -MGANFEPGPANVKRFLAAMDDMGLPR--FELSDL-EQGN 116 (1055)
Q Consensus 81 -k~~~~~~~~eNI~~FL~a~~~~Glp~--Fe~~DL-E~kn 116 (1055)
|..+.+...||...-|.-++.+|..- +-+.|| |++.
T Consensus 181 kk~Lnp~~~~EN~~l~lnSAkAiGc~VvNIga~Dl~eGrp 220 (627)
T KOG0046|consen 181 KKKLNPFERNENLNLALNSAKAIGCTVVNIGAQDLAEGRP 220 (627)
T ss_pred CCcCChhhhccchhhHHhhcccccceEEecCchhhhcCCc
Confidence 33445666899999999999999776 999999 7663
No 41
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.28 E-value=0.00031 Score=65.30 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=50.4
Q ss_pred CCCCccHHHHHHHchhhHHHHHHHhhhcCCCccc-CCCCCCC------cccHHHHHHHH-HhCCCCC--Cccccc
Q 001550 48 LPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEM-GANFEPG------PANVKRFLAAM-DDMGLPR--FELSDL 112 (1055)
Q Consensus 48 lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~k-~~~~~~~------~eNI~~FL~a~-~~~Glp~--Fe~~DL 112 (1055)
.|..+..+||...|+||.+||.|++...|+.++. .+.+.+. +.|+..|..+| +.+|... |++.||
T Consensus 7 ~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~edl 81 (85)
T PF11971_consen 7 APYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPEDL 81 (85)
T ss_pred CCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHHH
Confidence 3455677899999999999999999999999963 2333332 34999999999 5578776 666665
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.13 E-value=0.5 Score=53.51 Aligned_cols=47 Identities=38% Similarity=0.482 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 330 EKLEEQNALRLKKEND-------DRDIEISTLKQDLELAKRTHELHCLQLEEQI 376 (1055)
Q Consensus 330 ~~~~e~~~~~~~~e~~-------~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~ 376 (1055)
.+..+.++..|.+..+ +.+.++.+|+++|.-++..|++....+..+.
T Consensus 98 ~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 98 RKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 3345555666665554 3456788888999888888888777766554
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.87 E-value=0.99 Score=55.15 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 001550 307 EENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRT 364 (1055)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~ 364 (1055)
..++.+.++++.+..+...++.+....++++..+..+.+.....+..++.++..++..
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~ 270 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666667777666666555555555555544443
No 44
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.85 E-value=0.091 Score=60.64 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHhhh
Q 001550 432 VIQDLRVAFESTKHEVLETKKNYSKEFDCLG 462 (1055)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~ 462 (1055)
.|+-|+.++..++..+...++.|++.+.++.
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~ 284 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYR 284 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666655443
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.65 E-value=0.41 Score=58.14 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=76.7
Q ss_pred HhHHHHHHHHHHh---hhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001550 259 LRKVVPLIERRTA---TQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQ 335 (1055)
Q Consensus 259 l~kvv~e~e~ris---~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~ 335 (1055)
++++|.|..++.+ ....-|+.+++-++.+.++-.. .+.++++.+....+.+.++.+|..-+.-+.+..++
T Consensus 97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k-------~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 97 ARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK-------ERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3556666655433 2334445555556666655322 45667777777777777777777666666666666
Q ss_pred HHHHhhhcccch---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q 001550 336 NALRLKKENDDR---------------------DIEISTLKQDLELAKRTHELHCLQLEEQIY---------ETKIESQK 385 (1055)
Q Consensus 336 ~~~~~~~e~~~~---------------------~~e~~~Lk~ele~~k~~~e~~~~~le~~~~---------~~k~~le~ 385 (1055)
++.+|.++.... +..+.+|.++|+-++..|+..+.+...... ..+.+|..
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~ 249 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELAL 249 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHH
Confidence 666666666433 334566777777777777766555544322 33455555
Q ss_pred HHHHHHHHHHH
Q 001550 386 KLQELERLLTV 396 (1055)
Q Consensus 386 ~l~e~~~~l~~ 396 (1055)
-++|++...+.
T Consensus 250 Ai~eiRaqye~ 260 (546)
T KOG0977|consen 250 AIREIRAQYEA 260 (546)
T ss_pred HHHHHHHHHHH
Confidence 56665554433
No 46
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.63 E-value=0.95 Score=56.13 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCC--CCCCCccHHHHHHHchhhHHHHHHHhhh
Q 001550 35 LVEWLNEMIPHI--HLPFEASEEKLRACLVDGTVLCLVLNKL 74 (1055)
Q Consensus 35 ~~~WIe~vlg~~--~lp~~~s~edf~~~LrDGviLC~L~N~l 74 (1055)
++..|..+-+.. .+|... +....+-+|=|.-|...+..+
T Consensus 38 ~~~cL~~I~p~~~~~l~~~l-P~~msaRfr~~~~lA~~~k~l 78 (594)
T PF05667_consen 38 VVRCLRVIDPSLGSSLPRSL-PPGMSARFRVGTSLAQACKEL 78 (594)
T ss_pred HHHHHHHhCccccCCCcccC-ChHHHHHHHHHHHHHHHHHHc
Confidence 555555555533 444321 124566666666666666665
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.62 E-value=2 Score=52.44 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcc
Q 001550 470 DAAEKYHVILAENRRLYNEVQDLK 493 (1055)
Q Consensus 470 ~~~~~y~~~l~erRkL~N~vqelK 493 (1055)
.+.+.|+..-.+|.+|--+|-..+
T Consensus 382 ~~e~~lqEer~E~qkL~~ql~ke~ 405 (546)
T PF07888_consen 382 MLEEHLQEERMERQKLEKQLGKEK 405 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555556666655554433
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.59 E-value=0.63 Score=58.68 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=21.8
Q ss_pred HHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhh
Q 001550 269 RTATQYQNFKNQNNLFRAREEKYKSRIRVLET 300 (1055)
Q Consensus 269 ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~ 300 (1055)
|+..-..-|+....-.|..|..+++.|..|..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~ 453 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTN 453 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 44444555677777778888888887766655
No 49
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.58 E-value=0.91 Score=62.35 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001550 381 IESQKKLQELERLLT 395 (1055)
Q Consensus 381 ~~le~~l~e~~~~l~ 395 (1055)
.+++..+.+++..++
T Consensus 1016 ~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 1016 AKLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.52 E-value=1.5 Score=58.05 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=7.3
Q ss_pred EEecCHHHHHHHH
Q 001550 669 YSVQSTADVLELM 681 (1055)
Q Consensus 669 ~vvss~eev~~lL 681 (1055)
.+|.+.+.+..+.
T Consensus 624 ~v~~~l~~a~~~~ 636 (1164)
T TIGR02169 624 LVVEDIEAARRLM 636 (1164)
T ss_pred EEEcCHHHHHHHh
Confidence 3555656666553
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.48 E-value=2.1 Score=52.24 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 001550 346 DRDIEISTLKQDLELAKRTHE 366 (1055)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~~~e 366 (1055)
....++..||++|..++..++
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQ 300 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666555554433
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.44 E-value=1.2 Score=57.53 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=10.5
Q ss_pred EEecCHHHHHHHHHhh
Q 001550 669 YSVQSTADVLELMNIG 684 (1055)
Q Consensus 669 ~vvss~eev~~lL~~g 684 (1055)
..+.+-.++..+|..+
T Consensus 600 lLiEdk~Ea~~~m~s~ 615 (1074)
T KOG0250|consen 600 LLIEDKKEAREFMQSD 615 (1074)
T ss_pred EEecchHHHHHHHhcC
Confidence 3445557788888665
No 53
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.33 E-value=1.5 Score=53.88 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc
Q 001550 291 YKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDD 346 (1055)
Q Consensus 291 ~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~ 346 (1055)
.+-.++--++|.....+.+-.|.++++.||.-+.--+|-.++..+.|.++..+++.
T Consensus 479 LRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r 534 (961)
T KOG4673|consen 479 LRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR 534 (961)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566555555432222222233444455555555543
No 54
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.24 E-value=1.4 Score=59.57 Aligned_cols=66 Identities=8% Similarity=0.020 Sum_probs=34.9
Q ss_pred hHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 001550 412 SQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHV 477 (1055)
Q Consensus 412 ~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~ 477 (1055)
...|+..-..+...+..+...+++++..+..+..++...+..+.+--.........+......|+.
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKE 948 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344545555555556666666666666666666666666655544333333333333333333333
No 55
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.24 E-value=2.4 Score=56.83 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHhcC-CCCc----------cccCchhhhhhhhccCCCcccceeEecCCCCCCHHHHHHHHHHHhHhcc
Q 001550 754 KSLSALGDVIFALAHK-NPHV----------PYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSG 822 (1055)
Q Consensus 754 kSLsaLg~VI~aLa~k-~~hV----------PYRdSKLTrLLqdSLGGnskTlmI~~ISP~~~~~~ETLsTL~FA~Rak~ 822 (1055)
|||+||.-++.-+.-+ .++. ++--+.+.++|+... +++..++|-+=. -|+.+|.+.-+
T Consensus 1072 KsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~----------~~m~~ad~l~G 1140 (1163)
T COG1196 1072 KSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRK----------GTMEAADRLVG 1140 (1163)
T ss_pred HHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcCh----------HHHHHHHHHee
Confidence 4788887666554322 2210 122345677777766 555554443322 47788888877
Q ss_pred ccccc
Q 001550 823 VELGA 827 (1055)
Q Consensus 823 I~~~~ 827 (1055)
|....
T Consensus 1141 Vtm~~ 1145 (1163)
T COG1196 1141 VTMQE 1145 (1163)
T ss_pred eEeec
Confidence 76543
No 56
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.23 E-value=2.1 Score=54.12 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=23.4
Q ss_pred HHHHHchhhHHHHHHHhhhcCCCcccCCCCCCCcccHHHHHHHHH
Q 001550 56 KLRACLVDGTVLCLVLNKLSPDSVEMGANFEPGPANVKRFLAAMD 100 (1055)
Q Consensus 56 df~~~LrDGviLC~L~N~l~Pgsv~k~~~~~~~~eNI~~FL~a~~ 100 (1055)
.|..+.==||||=...-+ .-|+|..+. ||..-+|-+.|.+.-.
T Consensus 30 ~FA~G~WvGVvLDep~GK-NnGsVqg~q-YF~Cd~ncG~FVr~sq 72 (1243)
T KOG0971|consen 30 QFAEGKWVGVVLDEPKGK-NNGSVQGVQ-YFECDENCGVFVRSSQ 72 (1243)
T ss_pred ccccCceEEEEeccccCC-CCCccccee-eEecCCCcceEeehhh
Confidence 466666666666443333 246663333 3333568888876653
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.18 E-value=2.2 Score=57.26 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHH
Q 001550 435 DLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLID 470 (1055)
Q Consensus 435 el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~ 470 (1055)
+++..+..++.++...+..|......+...++.+.+
T Consensus 827 ~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~ 862 (1201)
T PF12128_consen 827 DLEQELQELEQELNQLQKEVKQRRKELEEELKALEE 862 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 58
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.14 E-value=1.9 Score=57.70 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=5.5
Q ss_pred EecCHHHHHHHH
Q 001550 670 SVQSTADVLELM 681 (1055)
Q Consensus 670 vvss~eev~~lL 681 (1055)
+|.+.+.+..+.
T Consensus 618 Iv~~l~~A~~l~ 629 (1163)
T COG1196 618 VVDDLEQARRLA 629 (1163)
T ss_pred EecCHHHHHHHH
Confidence 344445544444
No 59
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.11 E-value=3.5 Score=54.42 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=7.8
Q ss_pred HHHHhHhccccc
Q 001550 814 LKFAERVSGVEL 825 (1055)
Q Consensus 814 L~FA~Rak~I~~ 825 (1055)
+.+|.++-+|..
T Consensus 1155 ~~~~d~~~~~~~ 1166 (1179)
T TIGR02168 1155 MEVADQLYGVTM 1166 (1179)
T ss_pred HHHhhhHeeeee
Confidence 346888876653
No 60
>PRK11637 AmiB activator; Provisional
Probab=96.10 E-value=1.7 Score=51.72 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=8.6
Q ss_pred CCcccEEEEEEEe
Q 001550 700 SRSHSILTIHVRG 712 (1055)
Q Consensus 700 SRSH~IftI~V~~ 712 (1055)
...|+.|.|+..+
T Consensus 405 ~~~~l~fei~~~~ 417 (428)
T PRK11637 405 GRPSLYFEIRRQG 417 (428)
T ss_pred CCCeEEEEEEECC
Confidence 4568888777643
No 61
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.04 E-value=3 Score=46.63 Aligned_cols=94 Identities=24% Similarity=0.354 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 001550 287 REEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHE 366 (1055)
Q Consensus 287 ~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e 366 (1055)
+-+.|..=+.+|+. .. .+++++.+.|.+.|+++. +.++..|.++.+..+..|....+||..+. +|.
T Consensus 46 qy~~~~~~i~~le~---~~-------~~~l~~ak~eLqe~eek~---e~~l~~Lq~ql~~l~akI~k~~~el~~L~-TYk 111 (258)
T PF15397_consen 46 QYDIYRTAIDILEY---SN-------HKQLQQAKAELQEWEEKE---ESKLSKLQQQLEQLDAKIQKTQEELNFLS-TYK 111 (258)
T ss_pred HHHHHHHHHHHHHc---cC-------hHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 44555555555554 11 134555666777787754 66777888888888888887777777665 222
Q ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 367 L--------HCLQLEEQIYETKIESQKKLQELERLL 394 (1055)
Q Consensus 367 ~--------~~~~le~~~~~~k~~le~~l~e~~~~l 394 (1055)
. ++..|..+....+...+..+.++....
T Consensus 112 D~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~ 147 (258)
T PF15397_consen 112 DHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMR 147 (258)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 345555555555555555555544433
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.03 E-value=0.79 Score=57.81 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=24.7
Q ss_pred HHHHHHhHHHHHHHHHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHH
Q 001550 254 RVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERI 319 (1055)
Q Consensus 254 ~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l 319 (1055)
+++.-++|+=-|+-...+.. .+|+.|.......|...++-+..|+ .+++.+.+.+..|
T Consensus 422 rLE~dvkkLraeLq~~Rq~E-~ELRsqis~l~~~Er~lk~eL~qlr-------~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSE-QELRSQISSLTNNERSLKSELSQLR-------QENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhH-HHHHHHHhhccccchHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 44555555544443322222 2355554444444444333322222 2455555554443
No 63
>PRK11637 AmiB activator; Provisional
Probab=95.99 E-value=4.5 Score=48.30 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=4.0
Q ss_pred ceeeecC
Q 001550 586 TYTMSGP 592 (1055)
Q Consensus 586 TyTM~G~ 592 (1055)
.+|++|.
T Consensus 371 ~~t~Y~~ 377 (428)
T PRK11637 371 DMSLYGY 377 (428)
T ss_pred cEEEccC
Confidence 5666663
No 64
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=2.4 Score=55.02 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCCC----Cccccc-cCC-CchHHHHHHHHHHhhhhc
Q 001550 92 VKRFLAAMDDMGLPR----FELSDL-EQG-NMAPVLQCLRSLRASFSF 133 (1055)
Q Consensus 92 I~~FL~a~~~~Glp~----Fe~~DL-E~k-n~~~Vv~cL~aL~~~~~~ 133 (1055)
+.||=..+-.--|-+ |.+. + -+| .=+.|++.++=...|-..
T Consensus 91 ~~NFKSYaG~~ilGPFHksFtaI-vGPNGSGKSNVIDsmLFVFGfRA~ 137 (1293)
T KOG0996|consen 91 VENFKSYAGKQILGPFHKSFTAI-VGPNGSGKSNVIDSMLFVFGFRAS 137 (1293)
T ss_pred hhhhhhhcCceeecCCCCCceee-ECCCCCCchHHHHHHHHHhhhhHh
Confidence 367777763333434 4443 3 334 356788887665555443
No 65
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.85 E-value=3.6 Score=56.86 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEE 403 (1055)
Q Consensus 326 ~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~ 403 (1055)
++...+-.+.++.++..+.++...++..|..++..+......-..+++.. +....+++++..|+..+++.++.++++
T Consensus 1067 l~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~e-r~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1067 LDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAE-RASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444433333333333322 223344455555555555555555444
No 66
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.82 E-value=0.92 Score=60.83 Aligned_cols=135 Identities=24% Similarity=0.312 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 325 NIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEEL 404 (1055)
Q Consensus 325 k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~l 404 (1055)
.+++..+.....+..+.++......+....+.+++.++........+.+...++.+...++++.+++..+..+..+++.+
T Consensus 625 ~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~ 704 (1201)
T PF12128_consen 625 ELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEEL 704 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444555445555555555555555554444455555555555666666666666655555554443
Q ss_pred HH--------hhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhh
Q 001550 405 ES--------LSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLG 462 (1055)
Q Consensus 405 e~--------~~~~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~ 462 (1055)
.+ ........|+..+......++.....++..+. ..+.++..+.+.|..++...|
T Consensus 705 ~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~---~~~~~~~~le~~~~~eL~~~G 767 (1201)
T PF12128_consen 705 LEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQ---EAKEQLKELEQQYNQELAGKG 767 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCC
Confidence 22 22223345555555555555544444444443 344455555556666555555
No 67
>PRK02224 chromosome segregation protein; Provisional
Probab=95.74 E-value=6 Score=51.28 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhcC
Q 001550 31 QLSTLVEWLNEMIP 44 (1055)
Q Consensus 31 r~~e~~~WIe~vlg 44 (1055)
...++..||..++|
T Consensus 110 ~~~~~~~~i~~llg 123 (880)
T PRK02224 110 GARDVREEVTELLR 123 (880)
T ss_pred ChHHHHHHHHHHHC
Confidence 44578889999988
No 68
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=2.8 Score=52.27 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=12.6
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHH
Q 001550 336 NALRLKKENDDRDIEISTLKQDLELA 361 (1055)
Q Consensus 336 ~~~~~~~e~~~~~~e~~~Lk~ele~~ 361 (1055)
++.++...+.+.+.|+++|..++.++
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555444443
No 69
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.60 E-value=5.5 Score=45.24 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHH
Q 001550 307 EENQVVANQLERIKTEKTNIAQKEKL 332 (1055)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~~ 332 (1055)
++...+.+++++++.++..+-.+...
T Consensus 62 ~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 62 EERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444433
No 70
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=8.1 Score=47.19 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCCCC--------CCccHHHHHHHchhhHHHHHHHhhhcCCCcccCCCCCCCc-ccHHHHHHHHHhC
Q 001550 32 LSTLVEWLNEMIPHIHLP--------FEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGANFEPGP-ANVKRFLAAMDDM 102 (1055)
Q Consensus 32 ~~e~~~WIe~vlg~~~lp--------~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~k~~~~~~~~-eNI~~FL~a~~~~ 102 (1055)
++++..-|...|-.-.++ ..|+..||.+.+ --|-+.|.|+.- |..++ |-|-+||+ .+
T Consensus 72 ~s~c~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iF------kfLY~~Ldp~y~-----f~~r~EeEV~~ilK---~L 137 (581)
T KOG0995|consen 72 RSQCIRQIYNFLVENGFSHPISIKLLMKPSVKDFIAIF------KFLYGFLDPDYE-----FPERIEEEVVQILK---NL 137 (581)
T ss_pred HHHHHHHHHHHHHHcCCCCChhhhhcCCCccccHHHHH------HHHHhccCCCcc-----cchhHHHHHHHHHH---hC
Confidence 677777787777433332 346666777544 457788888654 11122 24555554 35
Q ss_pred CCCC-Cccccc-c---CCCchHHHHHHHHHHhhhhcc
Q 001550 103 GLPR-FELSDL-E---QGNMAPVLQCLRSLRASFSFC 134 (1055)
Q Consensus 103 Glp~-Fe~~DL-E---~kn~~~Vv~cL~aL~~~~~~k 134 (1055)
|-|= -.-+-+ - ..+-+.++..|+.|-+.....
T Consensus 138 ~YPf~~siSs~~a~gspH~WP~iL~mlhWlvdlI~~~ 174 (581)
T KOG0995|consen 138 KYPFLLSISSLQAAGSPHNWPHILGMLHWLVDLIRIN 174 (581)
T ss_pred CCCcccchhhhccCCCCCccHHHHHHHHHHHHHHHHh
Confidence 5552 111222 1 126688888888888777654
No 71
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.59 E-value=4.1 Score=55.35 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 380 KIESQKKLQELERLLTVSKKKVEELE 405 (1055)
Q Consensus 380 k~~le~~l~e~~~~l~~~~~~~~~le 405 (1055)
+..++.++.++...+..+...+++++
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~ 908 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAK 908 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444443
No 72
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.45 E-value=3 Score=47.57 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH-HHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 311 VVANQLERIKTEKTNIAQKEKLEEQ-NALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQE 389 (1055)
Q Consensus 311 ~~~~~l~~l~~e~~k~eek~~~~e~-~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e 389 (1055)
.|...|.+|..||..++....-+.+ -|.+|++.......+...+..+|+.++..--.+...||.+-+-....|-+++..
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~ 189 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDK 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777666554433322 267788887777777777777777666543334445555544555556666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHh
Q 001550 390 LERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDC 460 (1055)
Q Consensus 390 ~~~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~ 460 (1055)
+..+...+..++..--+.-.+..+.... .......+.=...++.|+..+..+++.+...+..+......
T Consensus 190 l~~eKr~Lq~~l~~~~s~~~s~~d~~~~--~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~ 258 (310)
T PF09755_consen 190 LEAEKRRLQEKLEQPVSAPPSPRDTVNV--SEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQ 258 (310)
T ss_pred HHHHHHHHHHHHccccCCCCCcchHHhh--cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555554443211111111111000 00000111122346677777777777777776666554443
No 73
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=95.40 E-value=0.036 Score=52.05 Aligned_cols=73 Identities=22% Similarity=0.475 Sum_probs=54.8
Q ss_pred HHHHHHchhhHHHHHHHhhhcCCCcccCCCCCC-----CcccHHHHHHHH-HhCCCCC---Cccccc--cCC-CchHHHH
Q 001550 55 EKLRACLVDGTVLCLVLNKLSPDSVEMGANFEP-----GPANVKRFLAAM-DDMGLPR---FELSDL--EQG-NMAPVLQ 122 (1055)
Q Consensus 55 edf~~~LrDGviLC~L~N~l~Pgsv~k~~~~~~-----~~eNI~~FL~a~-~~~Glp~---Fe~~DL--E~k-n~~~Vv~ 122 (1055)
..+-..+|-|.=||.|-|.++|..--.+..... .-..|-.|+.|| .++|+|+ |..+|| +.. .+.||+.
T Consensus 4 t~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~dT~gfvKVi~ 83 (89)
T PF06395_consen 4 TQLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGDDTNGFVKVIK 83 (89)
T ss_pred HHHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccCCCcchhhHHH
Confidence 357889999999999999999975323311111 012678999999 7899998 999999 333 5899998
Q ss_pred HHHHH
Q 001550 123 CLRSL 127 (1055)
Q Consensus 123 cL~aL 127 (1055)
.+..|
T Consensus 84 ~V~~v 88 (89)
T PF06395_consen 84 VVNRV 88 (89)
T ss_pred HHHhh
Confidence 88654
No 74
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=95.33 E-value=2.3 Score=49.75 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=37.9
Q ss_pred cHHHHHHHHHhCCCCC-CccccccCCCchHHHHHHHHHHhhhhcc
Q 001550 91 NVKRFLAAMDDMGLPR-FELSDLEQGNMAPVLQCLRSLRASFSFC 134 (1055)
Q Consensus 91 NI~~FL~a~~~~Glp~-Fe~~DLE~kn~~~Vv~cL~aL~~~~~~k 134 (1055)
=|.+-|..|+.+|+|. |.++=|-.|.-..|+..|-.|...+-.+
T Consensus 72 ~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~AL~~ 116 (359)
T PF10498_consen 72 TISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADEALKR 116 (359)
T ss_pred HHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999 9999998888888999888888877653
No 75
>PRK02224 chromosome segregation protein; Provisional
Probab=95.31 E-value=9.3 Score=49.58 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=7.7
Q ss_pred cchhhhhcccCCCCC
Q 001550 195 TFHDVLHLKEGGYTD 209 (1055)
Q Consensus 195 ~~~~~~~~~~~~~~~ 209 (1055)
.|...+-+.||.+..
T Consensus 128 ~f~~~~~i~Qge~~~ 142 (880)
T PRK02224 128 AFVNCAYVRQGEVNK 142 (880)
T ss_pred HhcceeEeeccChHH
Confidence 344444456665544
No 76
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.12 E-value=2.5 Score=52.56 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=23.0
Q ss_pred HHHhhhcCCCc---ccCCCCCCCcc---cHHH-HHHHHHhCCCCC---Cccc
Q 001550 69 LVLNKLSPDSV---EMGANFEPGPA---NVKR-FLAAMDDMGLPR---FELS 110 (1055)
Q Consensus 69 ~L~N~l~Pgsv---~k~~~~~~~~e---NI~~-FL~a~~~~Glp~---Fe~~ 110 (1055)
++++.|.|+.. |...+ +.|. ++.. .-.+|.++|.++ |++.
T Consensus 40 ~cL~~I~p~~~~~l~~~lP--~~msaRfr~~~~lA~~~k~lGy~~digyq~f 89 (594)
T PF05667_consen 40 RCLRVIDPSLGSSLPRSLP--PGMSARFRVGTSLAQACKELGYRGDIGYQTF 89 (594)
T ss_pred HHHHHhCccccCCCcccCC--hHHHHHHHHHHHHHHHHHHcCCCCCCcchhh
Confidence 45788888763 22222 2232 4443 345779999887 6554
No 77
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.08 E-value=4.7 Score=43.76 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=38.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 316 LERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTH---ELHCLQLEEQIYETKIESQKKLQELER 392 (1055)
Q Consensus 316 l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~---e~~~~~le~~~~~~k~~le~~l~e~~~ 392 (1055)
+.++..|+....+.....+.-+..|++.-+.....+..++..=+.++++. .....+.+.....++...+.+|.-...
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANe 150 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANE 150 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555566666665555555555655555555443 333334444444444444444444444
Q ss_pred HHH
Q 001550 393 LLT 395 (1055)
Q Consensus 393 ~l~ 395 (1055)
++.
T Consensus 151 ei~ 153 (207)
T PF05010_consen 151 EIA 153 (207)
T ss_pred HHH
Confidence 433
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=95.08 E-value=16 Score=47.41 Aligned_cols=10 Identities=40% Similarity=0.441 Sum_probs=5.4
Q ss_pred hHHHHHHHHH
Q 001550 231 SLFNIVNRIL 240 (1055)
Q Consensus 231 ~l~~~~~~~l 240 (1055)
....++..|+
T Consensus 146 ~r~~~~~~~~ 155 (880)
T PRK03918 146 SREKVVRQIL 155 (880)
T ss_pred HHHHHHHHHh
Confidence 4445555555
No 79
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.05 E-value=7.5 Score=43.53 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 346 DRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELER 392 (1055)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~ 392 (1055)
-....|..|..+|..++..+..+..++..-++.....++.+.+.-+.
T Consensus 117 vK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~ 163 (258)
T PF15397_consen 117 VKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKE 163 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999888888877766655555555554433
No 80
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.00 E-value=11 Score=46.16 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=7.7
Q ss_pred chhhhhcccCCCCCC
Q 001550 196 FHDVLHLKEGGYTDV 210 (1055)
Q Consensus 196 ~~~~~~~~~~~~~~~ 210 (1055)
|....-+.||.|..+
T Consensus 130 f~~~v~l~q~~f~~f 144 (562)
T PHA02562 130 FKQIVVLGTAGYVPF 144 (562)
T ss_pred HhHHheeccCchhhH
Confidence 333334566666544
No 81
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.88 E-value=14 Score=48.57 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHHhhhhHHHhhhhhHHHhhHHHH
Q 001550 258 LLRKVVPLIERRTATQYQNFKNQNNLFRAREEKY 291 (1055)
Q Consensus 258 ~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~ 291 (1055)
+..+-..-||+..-.-.+-|...|++++.+...+
T Consensus 292 ~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~ 325 (1293)
T KOG0996|consen 292 LVEKEKKALEGPKNEALEFLKKENELFRKKNKLC 325 (1293)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566665555555566666665554444
No 82
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=9.6 Score=47.85 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhh
Q 001550 261 KVVPLIERRTAT 272 (1055)
Q Consensus 261 kvv~e~e~ris~ 272 (1055)
|==.|+|+|...
T Consensus 324 kGqaELerRRq~ 335 (1118)
T KOG1029|consen 324 KGQAELERRRQA 335 (1118)
T ss_pred hhhHHHHHHHHH
Confidence 334556666443
No 83
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.85 E-value=2.7 Score=53.76 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=13.6
Q ss_pred HHHHhhhhccchhhHHHHHHHHHHHHHHhhhH
Q 001550 295 IRVLETLTVGTTEENQVVANQLERIKTEKTNI 326 (1055)
Q Consensus 295 ~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~ 326 (1055)
|+.|+.=.-...+.+..++++|+.+++|-+++
T Consensus 186 ir~LrqElEEK~enll~lr~eLddleae~~kl 217 (1195)
T KOG4643|consen 186 IRTLRQELEEKFENLLRLRNELDDLEAEISKL 217 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333333334444455555555444443
No 84
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.73 E-value=18 Score=47.31 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=7.7
Q ss_pred hhhhhhhhhccCCEEEE
Q 001550 483 RRLYNEVQDLKGNIRVY 499 (1055)
Q Consensus 483 RkL~N~vqelKGnIRV~ 499 (1055)
.++-.-++++++.+.+|
T Consensus 1738 ~r~~~vl~~I~~rv~~y 1754 (1758)
T KOG0994|consen 1738 KRVESVLDHINERVLYY 1754 (1758)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 33434444555554444
No 85
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.68 E-value=13 Score=45.67 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=6.8
Q ss_pred HHHhhcCccee
Q 001550 564 IRSVLDGYNVC 574 (1055)
Q Consensus 564 V~svLdGyN~~ 574 (1055)
-+.+|+|-+..
T Consensus 382 YRkLLegee~r 392 (546)
T KOG0977|consen 382 YRKLLEGEEER 392 (546)
T ss_pred HHHHhccccCC
Confidence 34566777665
No 86
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.65 E-value=4.8 Score=55.05 Aligned_cols=82 Identities=29% Similarity=0.382 Sum_probs=34.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 317 ERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTV 396 (1055)
Q Consensus 317 ~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~ 396 (1055)
..+..|.+.+.+.+++....-.+|..+.+..-.|...|..-+-.++-.++ .++....+.+..++.+++++...++.
T Consensus 741 ~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~----~~e~s~~~~k~~~e~~i~eL~~el~~ 816 (1822)
T KOG4674|consen 741 EKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKN----ELEESEMATKDKCESRIKELERELQK 816 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444445555544444443333332222222111 12222223344555555555555555
Q ss_pred HHHHHH
Q 001550 397 SKKKVE 402 (1055)
Q Consensus 397 ~~~~~~ 402 (1055)
++.++.
T Consensus 817 lk~klq 822 (1822)
T KOG4674|consen 817 LKKKLQ 822 (1822)
T ss_pred HHHHHH
Confidence 554433
No 87
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.59 E-value=6.8 Score=49.82 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=22.4
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 001550 333 EEQNALRLKKENDDRDIEISTLKQDLELAKRT 364 (1055)
Q Consensus 333 ~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~ 364 (1055)
+.++..++.||+|..+.|+..|+..-|.+++.
T Consensus 394 ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~ 425 (1243)
T KOG0971|consen 394 EKQDHQKLQKELEKKNSELEELRRQKERLSRE 425 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34556678888888888888777766666544
No 88
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.55 E-value=20 Score=46.48 Aligned_cols=20 Identities=20% Similarity=-0.041 Sum_probs=13.1
Q ss_pred HHHHHchhhHHHHHHHhhhc
Q 001550 56 KLRACLVDGTVLCLVLNKLS 75 (1055)
Q Consensus 56 df~~~LrDGviLC~L~N~l~ 75 (1055)
+......++.-||.-...+.
T Consensus 480 ~~~~l~~~~~~lk~~~~~l~ 499 (1174)
T KOG0933|consen 480 RRAKLHEDIGRLKDELDRLL 499 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777666664
No 89
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=6.4 Score=46.69 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 001550 314 NQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQ--KKLQELE 391 (1055)
Q Consensus 314 ~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le--~~l~e~~ 391 (1055)
++++.+-.-++++-+.+.-.+.++.+|+.-....+..+.+|+++-+..+........+|....+..+.+-+ .++++++
T Consensus 272 selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~Iqele 351 (521)
T KOG1937|consen 272 SELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELE 351 (521)
T ss_pred HHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 33444333333333444445667788888888888888888888887777655555544443332221111 3455555
Q ss_pred HHHHHHHHHHH
Q 001550 392 RLLTVSKKKVE 402 (1055)
Q Consensus 392 ~~l~~~~~~~~ 402 (1055)
..|+....+++
T Consensus 352 qdL~a~~eei~ 362 (521)
T KOG1937|consen 352 QDLEAVDEEIE 362 (521)
T ss_pred HHHHHHHHHHH
Confidence 55555444444
No 90
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.50 E-value=8.3 Score=52.86 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=19.2
Q ss_pred HHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC
Q 001550 447 VLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGN 495 (1055)
Q Consensus 447 i~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~vqelKGn 495 (1055)
+..+...|......+...+..+..........+..-++-++.+.-..|.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333334444333333333333333333333333334444444444444
No 91
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.42 E-value=2.7 Score=46.49 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 308 ENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKL 387 (1055)
Q Consensus 308 e~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l 387 (1055)
+.+.+.++.-++..+..++.++.+-.+..+. .....+|...|..++..+++.-..-..++.. ..+...+++.++
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-----~v~~~~e~~aL~~E~~~ak~r~~~le~el~~-l~~~~~~l~~~i 126 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLS-----AVKDERELRALNIEIQIAKERINSLEDELAE-LMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4455555555555555555555443333221 1122334445555544444332221111111 122334455555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001550 388 QELERLLTVSKKKVEELES 406 (1055)
Q Consensus 388 ~e~~~~l~~~~~~~~~le~ 406 (1055)
.++...+..+.+.+.++++
T Consensus 127 ~~l~~~~~~~e~~~~e~~~ 145 (239)
T COG1579 127 EDLKERLERLEKNLAEAEA 145 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 92
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.39 E-value=19 Score=45.19 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhhhh
Q 001550 473 EKYHVILAENRRLYNE 488 (1055)
Q Consensus 473 ~~y~~~l~erRkL~N~ 488 (1055)
..|+....++-.||++
T Consensus 244 a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 244 AAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555544
No 93
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.25 E-value=21 Score=46.70 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q 001550 604 YRALNDLFEISE 615 (1055)
Q Consensus 604 pRal~~LF~~~~ 615 (1055)
.+++++||+...
T Consensus 533 ~~~Lr~i~~~~~ 544 (1074)
T KOG0250|consen 533 ARILRAIMRRLK 544 (1074)
T ss_pred HHHHHHHHHHcC
Confidence 456777776554
No 94
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.16 E-value=16 Score=48.26 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=13.4
Q ss_pred HHHHHHch---hhHHHHHHH
Q 001550 55 EKLRACLV---DGTVLCLVL 71 (1055)
Q Consensus 55 edf~~~Lr---DGviLC~L~ 71 (1055)
.||..||+ ||.|.|..+
T Consensus 217 ADFGsClkm~~dG~V~s~~a 236 (1317)
T KOG0612|consen 217 ADFGSCLKMDADGTVRSSVA 236 (1317)
T ss_pred ccchhHHhcCCCCcEEeccc
Confidence 36888775 999999865
No 95
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.10 E-value=21 Score=44.57 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=41.5
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 001550 335 QNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKI----------ESQKKLQELERLLTVSKKKVEE 403 (1055)
Q Consensus 335 ~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~----------~le~~l~e~~~~l~~~~~~~~~ 403 (1055)
....+++++.++...+...|+.+|+.++......-.+++.+..+.+. ..+++++-+++.+..++++|+.
T Consensus 527 ~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEn 605 (786)
T PF05483_consen 527 KQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVEN 605 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777888888888887766665555554433222 2234444455555555555443
No 96
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.08 E-value=23 Score=44.85 Aligned_cols=12 Identities=17% Similarity=-0.006 Sum_probs=5.2
Q ss_pred HHhhhHHHHHHH
Q 001550 321 TEKTNIAQKEKL 332 (1055)
Q Consensus 321 ~e~~k~eek~~~ 332 (1055)
.|++..++.-+.
T Consensus 284 ~ElSqkeelVk~ 295 (1265)
T KOG0976|consen 284 DELSQKEELVKE 295 (1265)
T ss_pred hhhhHHHHHHHH
Confidence 444444444433
No 97
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.06 E-value=10 Score=42.04 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=6.6
Q ss_pred ccchhhHHHHHHHHHHH
Q 001550 303 VGTTEENQVVANQLERI 319 (1055)
Q Consensus 303 ~~~~ee~~~~~~~l~~l 319 (1055)
....+++..+.+++..+
T Consensus 27 ~~~~~~l~k~~~e~e~~ 43 (239)
T COG1579 27 KEIRKALKKAKAELEAL 43 (239)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 33334444444333333
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.92 E-value=23 Score=44.45 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001550 349 IEISTLKQDLELAKRTHEL 367 (1055)
Q Consensus 349 ~e~~~Lk~ele~~k~~~e~ 367 (1055)
.|+..|+.+++.+...++.
T Consensus 87 ~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444443
No 99
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.92 E-value=12 Score=43.14 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhhhhccchhhHHHHH
Q 001550 287 REEKYKSRIRVLETLTVGTTEENQVVA 313 (1055)
Q Consensus 287 ~~~~~~~~~~~le~l~~~~~ee~~~~~ 313 (1055)
+..=|.=|.+.++.|..+..+..+.+.
T Consensus 136 K~~WYeWR~~ll~gl~~~L~~~~~~L~ 162 (325)
T PF08317_consen 136 KKMWYEWRMQLLEGLKEGLEENLELLQ 162 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544444444333
No 100
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=93.79 E-value=6.5 Score=41.92 Aligned_cols=65 Identities=12% Similarity=0.285 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhh
Q 001550 399 KKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGL 463 (1055)
Q Consensus 399 ~~~~~le~~~~~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~ 463 (1055)
.++..+..-...+...|...+..+..++......+-.|=..+..++.....++.....++..+..
T Consensus 109 ~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~ 173 (182)
T PF15035_consen 109 QDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRA 173 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33333333334455667777777777777777666666666666666666666555555544433
No 101
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.75 E-value=19 Score=46.51 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=12.3
Q ss_pred HHhHHHHHHHHHHhhhhH
Q 001550 258 LLRKVVPLIERRTATQYQ 275 (1055)
Q Consensus 258 ~l~kvv~e~e~ris~q~~ 275 (1055)
-+..+++.||-|+.+--+
T Consensus 188 kI~ell~yieerLreLEe 205 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEE 205 (1200)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777778888776543
No 102
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.73 E-value=17 Score=47.45 Aligned_cols=27 Identities=26% Similarity=0.627 Sum_probs=15.8
Q ss_pred chHH---HHHHHHHhHhhhhcCCCCchHHHHHHhHH
Q 001550 230 KSLF---NIVNRILDECVERKNGDAPHRVACLLRKV 262 (1055)
Q Consensus 230 ~~l~---~~~~~~l~~~~~~~~~~~p~~~~~~l~kv 262 (1055)
|||+ .|+|++.+ +-++||+| ++-|-..
T Consensus 321 qSLLTLGRVInALVe-----~s~HIPYR-ESKLTRL 350 (1041)
T KOG0243|consen 321 QSLLTLGRVINALVE-----HSGHIPYR-ESKLTRL 350 (1041)
T ss_pred HHHHHHHHHHHHHHc-----cCCCCCch-HHHHHHH
Confidence 5666 45555554 46799987 4433333
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.70 E-value=5.8 Score=40.58 Aligned_cols=74 Identities=26% Similarity=0.298 Sum_probs=43.6
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001550 337 ALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWK 416 (1055)
Q Consensus 337 ~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~~ 416 (1055)
-..+..+.+....++.+|+.+++.+.........+|.+- -....++...++..+.+|.+|+.....-...++
T Consensus 40 ~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l--------~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 40 KECLILDAENSKAEIETLEEELEELTSELNQLELELDTL--------RSEKENLDKELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344555666777888888888887665544433333331 223445666677777777777766544443333
Q ss_pred HH
Q 001550 417 RI 418 (1055)
Q Consensus 417 ~~ 418 (1055)
.+
T Consensus 112 ~~ 113 (140)
T PF10473_consen 112 EK 113 (140)
T ss_pred HH
Confidence 33
No 104
>PRK03918 chromosome segregation protein; Provisional
Probab=93.61 E-value=16 Score=47.39 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=6.4
Q ss_pred HHHHHHHHhcC
Q 001550 34 TLVEWLNEMIP 44 (1055)
Q Consensus 34 e~~~WIe~vlg 44 (1055)
++..||..++|
T Consensus 112 ~~~~~i~~~~~ 122 (880)
T PRK03918 112 SVREWVERLIP 122 (880)
T ss_pred HHHHHHHHhcC
Confidence 45566666555
No 105
>PRK01156 chromosome segregation protein; Provisional
Probab=93.50 E-value=33 Score=44.81 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=14.6
Q ss_pred HHhhhhhhhhhhccCCEEEEeecCCC
Q 001550 480 AENRRLYNEVQDLKGNIRVYCRIRPF 505 (1055)
Q Consensus 480 ~erRkL~N~vqelKGnIRV~~RVRP~ 505 (1055)
.+.+.-.+++....|.+. .|=++|.
T Consensus 433 ~~l~~~~~el~~~~~~l~-~~~~Cp~ 457 (895)
T PRK01156 433 RALRENLDELSRNMEMLN-GQSVCPV 457 (895)
T ss_pred HHHHHHHHHHHHHHHhhc-cCCCCCC
Confidence 334444555665566666 4777774
No 106
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.44 E-value=3.8 Score=52.27 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 311 VVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQEL 390 (1055)
Q Consensus 311 ~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~ 390 (1055)
.+..+++.++.++.+++.....-.+++..++......+..+..|+.+|+.+++.-..-..+++.. +.....++.++.++
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~-~e~~e~le~~~~~~ 671 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAM-KESYESLETRLKDL 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHH
Confidence 34455666666666665554444555555565666666677788888887776655555554443 23455566777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001550 391 ERLLTVSKKKVEELESL 407 (1055)
Q Consensus 391 ~~~l~~~~~~~~~le~~ 407 (1055)
+.++..+..++..|+.-
T Consensus 672 e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666543
No 107
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.40 E-value=3.3 Score=46.16 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcc
Q 001550 468 LIDAAEKYHVILAENRRLYNEVQDLK 493 (1055)
Q Consensus 468 l~~~~~~y~~~l~erRkL~N~vqelK 493 (1055)
..+..++|.+.++||++|.-+|.-|.
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45668899999999999999887776
No 108
>PRK09039 hypothetical protein; Validated
Probab=93.38 E-value=7.1 Score=45.52 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=8.3
Q ss_pred hHHHHHHHHHhHhhh
Q 001550 231 SLFNIVNRILDECVE 245 (1055)
Q Consensus 231 ~l~~~~~~~l~~~~~ 245 (1055)
++|+|+.-.|++-|.
T Consensus 35 ~~f~~~q~fLs~~i~ 49 (343)
T PRK09039 35 TVFVVAQFFLSREIS 49 (343)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344566666666443
No 109
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.24 E-value=15 Score=42.81 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 347 RDIEISTLKQDLELAKRTHELHCLQLEEQIYET 379 (1055)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~ 379 (1055)
+..|+.+++.||+.+-+.|...|+++-.-+..+
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqal 451 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQAL 451 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999988866544433
No 110
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.18 E-value=49 Score=45.81 Aligned_cols=23 Identities=9% Similarity=0.359 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 001550 835 SDVRELMEQVGSLKDIITKKDEE 857 (1055)
Q Consensus 835 ~~v~eL~~qv~~Lk~~i~~~~ee 857 (1055)
..+..|..++..++..|.+.+.+
T Consensus 1211 et~e~Le~ei~rl~~~L~e~Er~ 1233 (1486)
T PRK04863 1211 EAIEQMEIELSRLTEELTSREQK 1233 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655543
No 111
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.18 E-value=10 Score=48.60 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEE
Q 001550 432 VIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGNIRV 498 (1055)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~vqelKGnIRV 498 (1055)
.+.+|...+..++.++..+..... .--..|.+.-......-.|||+.-.+|-+||.--.+
T Consensus 665 qleeL~~~l~k~~~Eld~l~~qL~-------ssq~~L~e~d~~L~~le~Errk~lEE~l~mKqeal~ 724 (775)
T PF10174_consen 665 QLEELEAALEKLRQELDQLKAQLE-------SSQQSLMERDQELNALEAERRKQLEEVLEMKQEALL 724 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 455666666666655544432111 111123333334445556889988999999954443
No 112
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.12 E-value=34 Score=47.42 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001550 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILA 480 (1055)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~ 480 (1055)
+..++..+......+..++..|..++-..+.-.+.|....+.|+....
T Consensus 1027 ~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~ 1074 (1822)
T KOG4674|consen 1027 IEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCND 1074 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566777877776666666666666666655443
No 113
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.07 E-value=9.7 Score=50.09 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 378 ETKIESQKKLQELERLLTVSKKKVEE 403 (1055)
Q Consensus 378 ~~k~~le~~l~e~~~~l~~~~~~~~~ 403 (1055)
..+..++.+++.+.++++....+.+.
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~ 692 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHR 692 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555555444443
No 114
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.05 E-value=2 Score=42.85 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 315 QLERIKTEKTNIAQKEKLEEQNALRLKKENDDR---DIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELE 391 (1055)
Q Consensus 315 ~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~---~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~ 391 (1055)
++..++.+...++..+....+++.+|+.+++.. ..++..|+.+++.++..|+.-+.-+-.+. +.-.+|+.++.|++
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~-E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS-EEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHH
Confidence 444455555566666667777888888888544 45677888888888888877666555543 22334444444444
Q ss_pred HH
Q 001550 392 RL 393 (1055)
Q Consensus 392 ~~ 393 (1055)
..
T Consensus 110 ~m 111 (120)
T PF12325_consen 110 EM 111 (120)
T ss_pred HH
Confidence 33
No 115
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.97 E-value=18 Score=45.02 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 001550 310 QVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHE 366 (1055)
Q Consensus 310 ~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e 366 (1055)
+.+..++++|-.-.++-...++.-+++..++.+-..+....+..|+.+++.++..|.
T Consensus 285 ~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 285 EEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333444444333333333444455666677777777778888888888888887755
No 116
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.81 E-value=30 Score=42.49 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=7.1
Q ss_pred hhhhhhhhhccC
Q 001550 483 RRLYNEVQDLKG 494 (1055)
Q Consensus 483 RkL~N~vqelKG 494 (1055)
.+|+++++.++-
T Consensus 495 e~le~~l~~l~l 506 (581)
T KOG0995|consen 495 EKLEEELLNLKL 506 (581)
T ss_pred HHHHHHHHHHHH
Confidence 456666666653
No 117
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.80 E-value=27 Score=41.87 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHhHhh--------hhcCCCCchHHHHHHhHHHHHHHHHHhhhhHHHhhhhhHH
Q 001550 235 IVNRILDECV--------ERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLF 284 (1055)
Q Consensus 235 ~~~~~l~~~~--------~~~~~~~p~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~ 284 (1055)
+|..+|-|++ +--+.+-|. +..|.--+.+|-+-|-++.+.+++||.-+
T Consensus 228 ~Vek~lfdY~~~~Y~~fl~~~~~~~~~--e~Elk~~f~~~~~~i~~~i~~lk~~n~~l 283 (622)
T COG5185 228 MVEKLLFDYFTESYKSFLKLEDNYEPS--EQELKLGFEKFVHIINTDIANLKTQNDNL 283 (622)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543 223344443 56677777888888899999999987543
No 118
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.77 E-value=20 Score=42.01 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=14.9
Q ss_pred CcceeEEeecccCCCcceeeecCC
Q 001550 570 GYNVCIFAYGQTGSGKTYTMSGPC 593 (1055)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~G~~ 593 (1055)
--|.|+|+-| .|-+.+-.||.
T Consensus 391 a~nr~vf~~~---e~~at~~~~ps 411 (499)
T COG4372 391 ATNRCVFATG---EGRATPRCGPS 411 (499)
T ss_pred ccceeeeccc---cccccCccCCC
Confidence 3589999855 56677777763
No 119
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.70 E-value=17 Score=47.00 Aligned_cols=24 Identities=46% Similarity=0.588 Sum_probs=10.0
Q ss_pred HHHHhhhcccchhHHHHHHHHHHH
Q 001550 336 NALRLKKENDDRDIEISTLKQDLE 359 (1055)
Q Consensus 336 ~~~~~~~e~~~~~~e~~~Lk~ele 359 (1055)
++.+|.-|.+..+.|++.++++|+
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~ 839 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLE 839 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.66 E-value=18 Score=41.81 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHhhhhccchhhHHHHHH
Q 001550 286 AREEKYKSRIRVLETLTVGTTEENQVVAN 314 (1055)
Q Consensus 286 ~~~~~~~~~~~~le~l~~~~~ee~~~~~~ 314 (1055)
++..=|.=|.+.++.|..+-.+..+.+.+
T Consensus 130 ak~~WYeWR~kllegLk~~L~~~~~~l~~ 158 (312)
T smart00787 130 AKKMWYEWRMKLLEGLKEGLDENLEGLKE 158 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666667777766655555544443
No 121
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.55 E-value=26 Score=41.08 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=3.6
Q ss_pred hhhhHHHhh
Q 001550 271 ATQYQNFKN 279 (1055)
Q Consensus 271 s~q~~~~~~ 279 (1055)
--|+..+++
T Consensus 80 ~~qlr~~rt 88 (499)
T COG4372 80 RPQLRALRT 88 (499)
T ss_pred HHHHHHHHH
Confidence 334444444
No 122
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.51 E-value=44 Score=43.57 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=8.4
Q ss_pred HHhhhhhhhhhhcc
Q 001550 480 AENRRLYNEVQDLK 493 (1055)
Q Consensus 480 ~erRkL~N~vqelK 493 (1055)
.||+.|..+|+-|+
T Consensus 544 ~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 544 EENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHHH
Confidence 35566666666665
No 123
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.49 E-value=23 Score=40.22 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=17.9
Q ss_pred HhhhhHHHhhhhhHHHhhHHHHHHHHHHHhh
Q 001550 270 TATQYQNFKNQNNLFRAREEKYKSRIRVLET 300 (1055)
Q Consensus 270 is~q~~~~~~q~~~~~~~~~~~~~~~~~le~ 300 (1055)
+-.+.+.++...+-|+.+.+.-...+..++.
T Consensus 73 l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~ 103 (312)
T PF00038_consen 73 LELEIDNLKEELEDLRRKYEEELAERKDLEE 103 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666665444444443
No 124
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.32 E-value=20 Score=44.55 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHhcC
Q 001550 29 GNQLSTLVEWLNEMIP 44 (1055)
Q Consensus 29 ~~r~~e~~~WIe~vlg 44 (1055)
..+-.++-.|-..+..
T Consensus 28 ~~~i~~Le~~k~~l~~ 43 (569)
T PRK04778 28 YKRIDELEERKQELEN 43 (569)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4556678888888876
No 125
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.31 E-value=0.074 Score=57.59 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=33.5
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.|+||.-+.. ..++..|..+..+.+.--..||. +|-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 5999997643 44667776666665552223455 78899999999998765
No 126
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.26 E-value=13 Score=37.27 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 001550 434 QDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDL 492 (1055)
Q Consensus 434 ~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~vqel 492 (1055)
.+|+....+.+..+......|..+=..|... +.+...++...-..|+-||++|+.+
T Consensus 76 ~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e---~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 76 NELKAEAESAKAELEESEASWEEQKEQLEKE---LSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444455554443333332 2333344444556799999999865
No 127
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.05 E-value=0.29 Score=58.87 Aligned_cols=93 Identities=23% Similarity=0.265 Sum_probs=58.7
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchh----HHHHHHHHHHHH
Q 001550 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVN----YRALNDLFEISE 615 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIi----pRal~~LF~~~~ 615 (1055)
.|....-|.|.-.|-.- +..||+.+-.|.-.- .-.|.|||||||||---- .....|-++ --...+||...+
T Consensus 4 ~F~l~s~f~PaGDQP~A---I~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI-~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA---IAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVI-AKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH---HHHHHHHHhcCceee-EEeeeccCCchhHHHHHH-HHhCCCeEEEecchhHHHHHHHHHH
Confidence 47777778888888542 466777766665443 457999999999996410 000011111 124556776666
Q ss_pred hccCCceEEEEEEEEEEeccee
Q 001550 616 SRKNSILYEVGVQMVEIYNEQV 637 (1055)
Q Consensus 616 ~~~~~~~~~V~vS~lEIYnE~V 637 (1055)
.--........|||+--|.-.-
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HhCcCcceEEEeeeccccCccc
Confidence 5555666788999999996553
No 128
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.74 E-value=0.19 Score=63.55 Aligned_cols=43 Identities=28% Similarity=0.530 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc
Q 001550 30 NQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV 79 (1055)
Q Consensus 30 ~r~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv 79 (1055)
..-.-++.||.. ++ ..-|. .+ ..-|.|||+|..++..|.|...
T Consensus 7 ~l~~~Lv~Wv~t-f~-~~~~~-~~----~~dL~DGv~L~evL~qIDp~~F 49 (713)
T PF05622_consen 7 ELCDSLVTWVQT-FN-LSAPC-SS----YEDLSDGVALAEVLHQIDPEYF 49 (713)
T ss_dssp HHHHHHHHHHTT-----SS----S----HHHHTTSHHHHHHHHHH-TTTS
T ss_pred hHHHHHHHHHHH-CC-CCCCc-CC----HHHccchHHHHHHHHHhCcccc
Confidence 344568999977 43 22222 12 3458899999999999999754
No 129
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.71 E-value=22 Score=38.34 Aligned_cols=124 Identities=18% Similarity=0.262 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHH
Q 001550 347 RDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFM 426 (1055)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~~~~~ 426 (1055)
.+.|+..|++.|...+.. ...++.++++.+.++...+..++.|..+...+.-.- ...++.-+
T Consensus 66 h~eEvr~Lr~~LR~~q~~---------------~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e---ReeL~~kL 127 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQ---------------ERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE---REELQRKL 127 (194)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHH
Confidence 345666666665443322 234556667777777777777777666654333110 01122222
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 001550 427 GCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQD 491 (1055)
Q Consensus 427 ~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~vqe 491 (1055)
+.-...+++-...+..+...+.-..+.|..++..-..+.. ++...+.....+-..|.+.|.+
T Consensus 128 ~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~---~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 128 SQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHK---EAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334444444444555555555666665543333332 2222233333334455554443
No 130
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=91.65 E-value=23 Score=38.50 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001550 349 IEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1055)
Q Consensus 349 ~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~ 407 (1055)
..+..|.+++.......+....++.........+|+.++.+-+..+..++.++..+..+
T Consensus 18 ~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~ 76 (206)
T PF14988_consen 18 KKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEF 76 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444444433333333334444444444444444444444444444444444333
No 131
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.53 E-value=15 Score=39.79 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=65.2
Q ss_pred hcCCCCchHHHHHHhHHHHHHHHHHhhh---hHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHH
Q 001550 246 RKNGDAPHRVACLLRKVVPLIERRTATQ---YQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTE 322 (1055)
Q Consensus 246 ~~~~~~p~~~~~~l~kvv~e~e~ris~q---~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e 322 (1055)
-|+||| +||+--..|.-..++.. ...|++|+.-.++....-.+++.-|..-....+-|+++..++|++.+.|
T Consensus 7 qk~GEI-----sLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 7 QKSGEI-----SLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred hhhhhH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 478887 46666666666665543 4567888888888777777777777776666667888888888876666
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 001550 323 KTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELA 361 (1055)
Q Consensus 323 ~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~ 361 (1055)
.+-+.++.- ..+.|+..|++++..+
T Consensus 82 a~lLrekl~--------------~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 82 AELLREKLG--------------QLEAELAELREELACA 106 (202)
T ss_pred HHHhhhhhh--------------hhHHHHHHHHHHHHhh
Confidence 555554432 3344566677766654
No 132
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.51 E-value=30 Score=39.53 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHH
Q 001550 463 LNLKRLIDAAEKYHV 477 (1055)
Q Consensus 463 ~~l~~l~~~~~~y~~ 477 (1055)
.....+-..++.||.
T Consensus 200 ~~~De~Rkeade~he 214 (294)
T COG1340 200 EEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 133
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.25 E-value=13 Score=38.16 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001550 383 SQKKLQELERLLTVSKKKVE 402 (1055)
Q Consensus 383 le~~l~e~~~~l~~~~~~~~ 402 (1055)
|..+++-++..|......++
T Consensus 78 l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 33334444444433333333
No 134
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.03 E-value=47 Score=40.96 Aligned_cols=57 Identities=28% Similarity=0.300 Sum_probs=27.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 345 DDRDIEISTLKQDLELAKRTHE---LHCLQLEEQIYETKIESQKKLQELERLLTVSKKKV 401 (1055)
Q Consensus 345 ~~~~~e~~~Lk~ele~~k~~~e---~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~ 401 (1055)
+....||..||+.|+.++-.|. ++...+..+.......++..+.+.+..+..+++++
T Consensus 175 e~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 175 EELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776654332 12222222223333444444444555555554444
No 135
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.67 E-value=30 Score=38.11 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001550 382 ESQKKLQELERLLTVSKKKVEELESLS 408 (1055)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~~~le~~~ 408 (1055)
.++.++.+++..|....+.++.++...
T Consensus 138 ~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 346666777777777777666665543
No 136
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.67 E-value=30 Score=38.11 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=6.2
Q ss_pred hhhhhhhhhcc
Q 001550 483 RRLYNEVQDLK 493 (1055)
Q Consensus 483 RkL~N~vqelK 493 (1055)
+.|...+.+|-
T Consensus 225 ~eld~~l~el~ 235 (237)
T PF00261_consen 225 EELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHhh
Confidence 45656665553
No 137
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.56 E-value=28 Score=37.62 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001550 369 CLQLEEQIYETKIESQKKLQE 389 (1055)
Q Consensus 369 ~~~le~~~~~~k~~le~~l~e 389 (1055)
+.+++.+..++...++.-+.+
T Consensus 116 ~~kle~ErdeL~~kf~~~i~e 136 (201)
T PF13851_consen 116 FEKLEQERDELYRKFESAIQE 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 138
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.53 E-value=58 Score=41.07 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHH------HHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001550 426 MGCQLGVIQDLRVAFESTKHEVLET------KKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEV 489 (1055)
Q Consensus 426 ~~~Q~~~l~el~~~~~~~k~ei~~~------~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~v 489 (1055)
++.|...+.++..+..+.+.++... -..+.+|.+.|..++..+-...+.|-....++=.|-..+
T Consensus 246 ~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL 315 (716)
T KOG4593|consen 246 MKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKL 315 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4455566677777777777777633 345677788888777777666655554444444443333
No 139
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.13 E-value=30 Score=37.20 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhHHHhhhhhH
Q 001550 263 VPLIERRTATQYQNFKNQNNL 283 (1055)
Q Consensus 263 v~e~e~ris~q~~~~~~q~~~ 283 (1055)
++|..+++......|+.|...
T Consensus 34 ~ee~na~L~~e~~~L~~q~~s 54 (193)
T PF14662_consen 34 AEEGNAQLAEEITDLRKQLKS 54 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666665433
No 140
>PRK01156 chromosome segregation protein; Provisional
Probab=90.09 E-value=74 Score=41.65 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=7.0
Q ss_pred hcccchhHHHHHHHHHHH
Q 001550 342 KENDDRDIEISTLKQDLE 359 (1055)
Q Consensus 342 ~e~~~~~~e~~~Lk~ele 359 (1055)
.+.+....++..|+.+++
T Consensus 225 ~el~~~~~~l~~l~~~l~ 242 (895)
T PRK01156 225 IEYNNAMDDYNNLKSALN 242 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444443333
No 141
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.08 E-value=70 Score=41.37 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHH
Q 001550 426 MGCQLGVIQDLRVAFESTKHEVLET 450 (1055)
Q Consensus 426 ~~~Q~~~l~el~~~~~~~k~ei~~~ 450 (1055)
++.....+++++..+..+..++...
T Consensus 467 le~~~~e~~~lk~~~~~LQ~eLsEk 491 (775)
T PF10174_consen 467 LETYQKELKELKAKLESLQKELSEK 491 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444455556666555555555443
No 142
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.05 E-value=35 Score=38.47 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 308 ENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1055)
Q Consensus 308 e~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1055)
+...+.++++.|...-+++..+.....+++.++..++...+.+|..|++.+..-+..++.+.+-|..
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666667777766777777777777777777777777777766666666555554
No 143
>PRK06893 DNA replication initiation factor; Validated
Probab=90.01 E-value=0.18 Score=54.89 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=33.0
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..++||..++... ..-+ ..+.+.+-.++|.+++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 3588999886553 2211 2222333357888899999999999999875
No 144
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.62 E-value=16 Score=42.99 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 348 DIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQK 385 (1055)
Q Consensus 348 ~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~ 385 (1055)
..|+.-|+..|..+++.|.+...+.-.+..+.+.++++
T Consensus 259 ~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~r 296 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENER 296 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55677777777777777776666655554444444443
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.45 E-value=0.18 Score=62.24 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=37.3
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..|+||..+-... +..+|..+..++...-.+||. ||-||.+|+||||-+..
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4589998664343 445666666666654457786 89999999999999875
No 146
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.44 E-value=14 Score=43.20 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 001550 431 GVIQDLRVAFESTKHEVLET 450 (1055)
Q Consensus 431 ~~l~el~~~~~~~k~ei~~~ 450 (1055)
..+.+++..+..++..+..+
T Consensus 253 ~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 253 ARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34555555666666666653
No 147
>PRK06620 hypothetical protein; Validated
Probab=89.13 E-value=0.18 Score=54.44 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=34.8
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcc---eeEEeecccCCCcceeeec
Q 001550 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYN---VCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN---~~IfAYGQTGSGKTyTM~G 591 (1055)
..|+||..+...+ +...|..++.+.+. -|+| -.++-||++||||||.+..
T Consensus 11 ~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 3589999775444 45577766555442 1454 3589999999999999864
No 148
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.11 E-value=72 Score=40.12 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 001550 331 KLEEQNALRLKKENDDRDIEISTLKQDLEL 360 (1055)
Q Consensus 331 ~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~ 360 (1055)
-..|+.|--+.||.+...+|+..||.+|.+
T Consensus 412 a~lEkKvqa~~kERDalr~e~kslk~ela~ 441 (961)
T KOG4673|consen 412 ATLEKKVQALTKERDALRREQKSLKKELAA 441 (961)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345666767777777777888888887765
No 149
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.76 E-value=10 Score=43.58 Aligned_cols=65 Identities=42% Similarity=0.492 Sum_probs=44.6
Q ss_pred HhHHHHHHHHH------HhhhhHHHhhhhhHHHhhH--HHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhh
Q 001550 259 LRKVVPLIERR------TATQYQNFKNQNNLFRARE--EKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTN 325 (1055)
Q Consensus 259 l~kvv~e~e~r------is~q~~~~~~q~~~~~~~~--~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k 325 (1055)
||++-+-+|.| +.+|.+.|++| |+.+++ -+...++.-||.+.....||++.+.-+|+.+..|.-+
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nq--L~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~E 159 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQ--LFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGE 159 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 44444444443 77888888887 454444 3446667889999999999998888888876655433
No 150
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=88.74 E-value=51 Score=37.93 Aligned_cols=114 Identities=19% Similarity=0.318 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHH
Q 001550 353 TLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGV 432 (1055)
Q Consensus 353 ~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~~~~~~~Q~~~ 432 (1055)
.||+++..--..|+++...|... .+-.-.++.+++.+.++++.++.---.+++.|..-.... |
T Consensus 219 qlK~ql~lY~aKyeefq~tl~KS--------NE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~v---L------ 281 (391)
T KOG1850|consen 219 QLKEQLALYMAKYEEFQTTLAKS--------NELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAV---L------ 281 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---H------
Confidence 45555554444455544443321 233455677777788888888776667777775432211 1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEE
Q 001550 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGNIRVY 499 (1055)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~vqelKGnIRV~ 499 (1055)
++......|.+++..+..+++.|...+.. .-.+|..|+..+++++++|.+-
T Consensus 282 -------------~la~ekt~~~k~~~~lq~kiq~LekLcRA---Lq~ernel~~~~~~~e~~v~~k 332 (391)
T KOG1850|consen 282 -------------QLAEEKTVRDKEYETLQKKIQRLEKLCRA---LQTERNELNKKLEDLEAQVSAK 332 (391)
T ss_pred -------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHhcccchh
Confidence 12223334455566666666665544332 3357888999999999999873
No 151
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=88.61 E-value=62 Score=39.49 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHH
Q 001550 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAE 473 (1055)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~ 473 (1055)
++=++..++..+..|......-.++...|..+++.|.+...
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~ 182 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNA 182 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666555444555556666666654443
No 152
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.46 E-value=96 Score=40.75 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=10.0
Q ss_pred cCCCCCCccccccccCC
Q 001550 967 LGFGDEVSEERLSDISD 983 (1055)
Q Consensus 967 ~~~~~~~~~~~~~~~~~ 983 (1055)
+.|.+.+.=.+|+.=+-
T Consensus 946 VkFR~s~~L~~L~sh~Q 962 (1072)
T KOG0979|consen 946 VKFRDSEGLKVLDSHRQ 962 (1072)
T ss_pred EEEccCccccccccccc
Confidence 44666666666664443
No 153
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.46 E-value=0.21 Score=56.51 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=26.9
Q ss_pred HHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
-|++..+++--++.|+..|+||||||+||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 467778889999999999999999999985
No 154
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.12 E-value=22 Score=43.83 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHH
Q 001550 262 VVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLER 318 (1055)
Q Consensus 262 vv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~ 318 (1055)
+.||==+|+..--|.|.-|-.++--+-+--..+|+-||++--++++.+...+..|++
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQq 164 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQ 164 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHH
Confidence 445555565555555555555554444444556888999888887777766666665
No 155
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.04 E-value=75 Score=39.03 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 837 VRELMEQVGSLKDIITKKDEEIERLQ 862 (1055)
Q Consensus 837 v~eL~~qv~~Lk~~i~~~~eei~~Lq 862 (1055)
...|++++-.||..+.-+.+.|..|+
T Consensus 600 ~e~l~~~ilklksllstkreqi~tlr 625 (772)
T KOG0999|consen 600 KEALMEQILKLKSLLSTKREQITTLR 625 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666666554
No 156
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.77 E-value=0.28 Score=53.58 Aligned_cols=47 Identities=11% Similarity=0.285 Sum_probs=32.5
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.|+||..+.. .+..++..+..++. ......++-||++|+||||.+.+
T Consensus 18 ~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 18 DETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred cCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 4788876644 55666665554443 22234789999999999999875
No 157
>PRK12377 putative replication protein; Provisional
Probab=87.74 E-value=0.4 Score=53.20 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=37.4
Q ss_pred eeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 542 KFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 542 ~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
+||........|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 566544445667778888888888877654 4688899999999999875
No 158
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.60 E-value=75 Score=38.54 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHhhhh
Q 001550 232 LFNIVNRILDECVER 246 (1055)
Q Consensus 232 l~~~~~~~l~~~~~~ 246 (1055)
--.++|.+.+.+++.
T Consensus 136 Aa~i~n~l~~~yi~~ 150 (498)
T TIGR03007 136 AKDVVQTLLTIFVEE 150 (498)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345777777666654
No 159
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.26 E-value=77 Score=39.54 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=12.7
Q ss_pred HHHHhhhhhhhhhhcc
Q 001550 478 ILAENRRLYNEVQDLK 493 (1055)
Q Consensus 478 ~l~erRkL~N~vqelK 493 (1055)
.+..+|+|-|++..|+
T Consensus 381 Ll~knr~lq~e~a~Lr 396 (629)
T KOG0963|consen 381 LLEKNRKLQNENASLR 396 (629)
T ss_pred HHHHHhhhhHHHHHHh
Confidence 3467899999998876
No 160
>PLN03188 kinesin-12 family protein; Provisional
Probab=87.25 E-value=57 Score=43.76 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=48.1
Q ss_pred HHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc-------chhHHHHHHHHHHHHHHHHHH
Q 001550 294 RIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKEND-------DRDIEISTLKQDLELAKRTHE 366 (1055)
Q Consensus 294 ~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~-------~~~~e~~~Lk~ele~~k~~~e 366 (1055)
|-..||.+....-.+++.+..-++|-|.|++------..-|+.+.||+.=++ -.+.|..+|-.+-..+|++|+
T Consensus 878 re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~ 957 (1320)
T PLN03188 878 REMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKYE 957 (1320)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHhh
Confidence 4556666666666677777766777676665221112244566666666663 346778888888888888888
Q ss_pred HH
Q 001550 367 LH 368 (1055)
Q Consensus 367 ~~ 368 (1055)
.|
T Consensus 958 ~~ 959 (1320)
T PLN03188 958 NH 959 (1320)
T ss_pred cC
Confidence 76
No 161
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.18 E-value=90 Score=38.99 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=72.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 319 IKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLEL-AKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVS 397 (1055)
Q Consensus 319 l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~-~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~ 397 (1055)
|+.+...+.++....++.+..|..-.++.+.+...++..... +--.+.+-..-|. +. +.-++++.+++.+.+.+
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~-eL----e~aq~ri~~lE~e~e~L 261 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMT-EL----EDAQQRIVFLEREVEQL 261 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHH
Confidence 455555666666666666666655555555544444433111 0000111000000 00 11234455555555555
Q ss_pred HHHHHHHHHhh-hhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHH
Q 001550 398 KKKVEELESLS-ESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYH 476 (1055)
Q Consensus 398 ~~~~~~le~~~-~~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~ 476 (1055)
+.++....+-. ..+.... ...-..+..=.+.|+.|-..++.++.-+.+....+..+++.|..+++......+...
T Consensus 262 ~~ql~~~N~~~~~~~~~~i----~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~ 337 (629)
T KOG0963|consen 262 REQLAKANSSKKLAKIDDI----DALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELK 337 (629)
T ss_pred HHHHHhhhhhhhhccCCch----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544332211 1111111 111111222224466666666666666666666666666666666666555555554
Q ss_pred HHHHHhhhhhhhh
Q 001550 477 VILAENRRLYNEV 489 (1055)
Q Consensus 477 ~~l~erRkL~N~v 489 (1055)
..+.. |..|++|
T Consensus 338 ~kL~~-~sDYeeI 349 (629)
T KOG0963|consen 338 EKLNS-RSDYEEI 349 (629)
T ss_pred HHHhh-hccHHHH
Confidence 44433 3555544
No 162
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.13 E-value=0.26 Score=59.22 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=28.0
Q ss_pred hHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 560 TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 560 ~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
....+..++..-++-|+.-|+||||||+||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34567778889999999999999999999986
No 163
>PRK08116 hypothetical protein; Validated
Probab=87.09 E-value=0.36 Score=53.97 Aligned_cols=51 Identities=22% Similarity=0.394 Sum_probs=37.8
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhc--CcceeEEeecccCCCcceeeec
Q 001550 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLD--GYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLd--GyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.++||... .+..+...|..+..+++.+.. ..|..++-||++|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 35677644 456667778778888887654 3466799999999999999864
No 164
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.97 E-value=21 Score=45.74 Aligned_cols=7 Identities=43% Similarity=0.648 Sum_probs=4.1
Q ss_pred Ccccccc
Q 001550 107 FELSDLE 113 (1055)
Q Consensus 107 Fe~~DLE 113 (1055)
||++|||
T Consensus 342 ~E~VeLe 348 (717)
T PF10168_consen 342 LETVELE 348 (717)
T ss_pred EEEEeec
Confidence 6666654
No 165
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.94 E-value=78 Score=38.02 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 001550 312 VANQLERIKTEKTNIAQKEKLEEQNALRLK 341 (1055)
Q Consensus 312 ~~~~l~~l~~e~~k~eek~~~~e~~~~~~~ 341 (1055)
+.+.+...+.+..+++...+..+.++..+.
T Consensus 50 ~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~ 79 (420)
T COG4942 50 LEKKIREQQDQRAKLEKQLKSLETEIASLE 79 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333343333333333333333
No 166
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.93 E-value=0.28 Score=58.64 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=35.8
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..|+||.-+.. .++...|..+..+... -..||. +|-||++|+||||.|..
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 45899987743 4556677666555543 123675 99999999999999865
No 167
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.83 E-value=77 Score=40.70 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=14.6
Q ss_pred HhhhhHHHhhhhhHHHhhHHHHHHHHHHH
Q 001550 270 TATQYQNFKNQNNLFRAREEKYKSRIRVL 298 (1055)
Q Consensus 270 is~q~~~~~~q~~~~~~~~~~~~~~~~~l 298 (1055)
+..|.+.++.+..--....+.|+....++
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~~l~ 227 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQSDLL 227 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34444445555444555556666554443
No 168
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.82 E-value=1.1e+02 Score=39.65 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhHH
Q 001550 306 TEENQVVANQLERIKTEKTNIA 327 (1055)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~e 327 (1055)
.+|.|.+.+++.++...++..+
T Consensus 385 ~~e~eqLr~elaql~a~r~q~e 406 (980)
T KOG0980|consen 385 REEQEQLRNELAQLLASRTQLE 406 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555444433
No 169
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=86.72 E-value=19 Score=45.44 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=37.2
Q ss_pred HHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHH
Q 001550 418 IEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYH 476 (1055)
Q Consensus 418 ~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~ 476 (1055)
+...+-..++.|..+.+.+...+.....++.+.++.|.-|..++...+.+.......++
T Consensus 456 kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q 514 (861)
T PF15254_consen 456 KNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQ 514 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556666777777777777777777777777777777766655554433333333
No 170
>PRK06835 DNA replication protein DnaC; Validated
Probab=86.69 E-value=0.29 Score=56.42 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=29.2
Q ss_pred hHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 553 QEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 553 QeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
...++..+...|+.+-.+. -.|+-||++|+||||.+.+
T Consensus 165 ~~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 165 MEKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3456666677888776554 5699999999999998865
No 171
>PRK05642 DNA replication initiation factor; Validated
Probab=86.61 E-value=0.41 Score=52.36 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=29.8
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCc-ceeEEeecccCCCcceeeec
Q 001550 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGY-NVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGy-N~~IfAYGQTGSGKTyTM~G 591 (1055)
.|+||.-+... +..++..+..+.+.. .++ +-.++-||++|+||||-+..
T Consensus 15 ~~tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 15 DATFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred cccccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHH
Confidence 48899877432 333333333332211 122 34688999999999999765
No 172
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.52 E-value=0.51 Score=52.25 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=36.1
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.+||........|..++..+..+++....|++ .++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 45665443445677788777777776655543 689999999999999875
No 173
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.36 E-value=18 Score=36.09 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHh
Q 001550 434 QDLRVAFESTKHEVLETKKNYSKEFDC 460 (1055)
Q Consensus 434 ~el~~~~~~~k~ei~~~~~~~~~e~~~ 460 (1055)
.+....++.++.+|..++.-|..+++.
T Consensus 92 GEK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 92 GEKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666677777677766543
No 174
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.04 E-value=88 Score=37.80 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=15.0
Q ss_pred CccHHHHHHHchhhHHHHHHHhhh
Q 001550 51 EASEEKLRACLVDGTVLCLVLNKL 74 (1055)
Q Consensus 51 ~~s~edf~~~LrDGviLC~L~N~l 74 (1055)
...+..++.+-.+||+=.-+-|.+
T Consensus 99 plrdk~yqq~c~~~I~~yL~engf 122 (622)
T COG5185 99 PLRDKNYQQACQEEIYDYLKENGF 122 (622)
T ss_pred ccccchHHHHHHHHHHHHHHHcCC
Confidence 344556777777777665555555
No 175
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=85.99 E-value=1.1e+02 Score=39.05 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=8.3
Q ss_pred HHHHhHHHHHHHHH
Q 001550 256 ACLLRKVVPLIERR 269 (1055)
Q Consensus 256 ~~~l~kvv~e~e~r 269 (1055)
..++|.+|-++|-.
T Consensus 87 triyRrdv~llEdd 100 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDD 100 (1265)
T ss_pred HHHHHHHHHHhHHH
Confidence 45666666666544
No 176
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.97 E-value=1.6 Score=49.51 Aligned_cols=110 Identities=16% Similarity=0.366 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc-cCCCCCCCc-----ccHHHHHHHHHhC
Q 001550 29 GNQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE-MGANFEPGP-----ANVKRFLAAMDDM 102 (1055)
Q Consensus 29 ~~r~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~-k~~~~~~~~-----eNI~~FL~a~~~~ 102 (1055)
.--|.|++.|+..++. .++. -.+-|..|-.-|.++..+.||.|+ +++.|.... -|-..+-.+-..+
T Consensus 14 ~~sR~E~laW~N~~l~-~n~~-------kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~kl 85 (295)
T KOG3000|consen 14 NESRLEILAWINDLLQ-LNLT-------KIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKL 85 (295)
T ss_pred ccchHHHHHHHHhhhh-cchh-------hhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHHHHHhc
Confidence 3456799999999998 5552 345577999999999999999996 445553333 3777777777999
Q ss_pred CCCC-CccccccCCCchHHHHHHHHHHhhhhccCCCCcccccccc
Q 001550 103 GLPR-FELSDLEQGNMAPVLQCLRSLRASFSFCDEEDTIQDHYRK 146 (1055)
Q Consensus 103 Glp~-Fe~~DLE~kn~~~Vv~cL~aL~~~~~~k~~g~~~~~~~~~ 146 (1055)
|+.. -.+.+|=++-+.--+.-+..++.|+....+|...-+-.+|
T Consensus 86 gi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g~~yd~~~~R 130 (295)
T KOG3000|consen 86 GIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGGKGYDALARR 130 (295)
T ss_pred CCcccccHHHHhcccccchHHHHHHHHHHhhccCCccccCHHHHh
Confidence 9999 7777776665655566788899999988777544444443
No 177
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.94 E-value=0.37 Score=56.76 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=34.7
Q ss_pred ceeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
...|+||.... ...+...|..+..+...--..||. ++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n~-l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYNP-LFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCCe-EEEECCCCCcHHHHHHH
Confidence 35689998442 345566776666665542122454 78899999999999864
No 178
>PRK09039 hypothetical protein; Validated
Probab=85.57 E-value=81 Score=36.92 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=7.5
Q ss_pred cceeEEeecccCC
Q 001550 571 YNVCIFAYGQTGS 583 (1055)
Q Consensus 571 yN~~IfAYGQTGS 583 (1055)
.+..|-.-|.|.+
T Consensus 261 i~~~I~I~GHTD~ 273 (343)
T PRK09039 261 INWVLRVDGHTDN 273 (343)
T ss_pred CCeeEEEEEecCC
Confidence 3445656676665
No 179
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.43 E-value=47 Score=34.09 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 001550 384 QKKLQELERLL 394 (1055)
Q Consensus 384 e~~l~e~~~~l 394 (1055)
|+++...+..|
T Consensus 86 Eeele~ae~~L 96 (143)
T PF12718_consen 86 EEELEEAEKKL 96 (143)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 180
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.26 E-value=0.4 Score=57.34 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=35.2
Q ss_pred ceeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
...|+||.... ...+...|..+..+.+.--..|| .+|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 35688988443 23555567666666554323455 478899999999999865
No 181
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.00 E-value=1.1e+02 Score=37.90 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=18.0
Q ss_pred HhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 001550 420 HSYQSFMGCQLGVIQDLRVAFESTKHEVLETK 451 (1055)
Q Consensus 420 ~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~ 451 (1055)
..++..+..+...|.+.+..++.++.++..++
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~ 308 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLR 308 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666665555444
No 182
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=84.97 E-value=36 Score=39.73 Aligned_cols=7 Identities=29% Similarity=0.107 Sum_probs=3.5
Q ss_pred cCcceeE
Q 001550 569 DGYNVCI 575 (1055)
Q Consensus 569 dGyN~~I 575 (1055)
.|-.+.|
T Consensus 326 ~G~~v~v 332 (423)
T TIGR01843 326 VGQPAEI 332 (423)
T ss_pred CCCceEE
Confidence 4555554
No 183
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.97 E-value=1e+02 Score=39.58 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 839 ELMEQVGSLKDIITKKDEEIERLQVL 864 (1055)
Q Consensus 839 eL~~qv~~Lk~~i~~~~eei~~Lq~l 864 (1055)
++.-|+..|+..++..++|-..|..|
T Consensus 672 EYvtQldemqrqL~aAEdEKKTLNsL 697 (717)
T PF09730_consen 672 EYVTQLDEMQRQLAAAEDEKKTLNSL 697 (717)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44445555555555555555555433
No 184
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=84.79 E-value=74 Score=39.08 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHH
Q 001550 432 VIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYH 476 (1055)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~ 476 (1055)
.++++...+..++.|+..++..|.++++.|-.++..|.+....-+
T Consensus 463 eL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ 507 (518)
T PF10212_consen 463 ELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQR 507 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777778888999999999999999999999888876655443
No 185
>PRK09087 hypothetical protein; Validated
Probab=84.61 E-value=0.58 Score=51.08 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=32.2
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..|+||..+...++ ..+|..+ +....-.|..++-||++||||||-+..
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l----~~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLV----DHWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCChhceeecCch-HHHHHHH----HhcccCCCCeEEEECCCCCCHHHHHHH
Confidence 35889998854444 3366533 332222355689999999999999864
No 186
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.52 E-value=0.45 Score=57.12 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=34.2
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.|+||..+... ++...|..+..++..-=..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 48999966444 455677666655543212345 488999999999999865
No 187
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=84.47 E-value=37 Score=35.05 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=48.8
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCchHHHHHHhHHHHHHHHHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchh
Q 001550 228 STKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTE 307 (1055)
Q Consensus 228 ~~~~l~~~~~~~l~~~~~~~~~~~p~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~e 307 (1055)
.+.+-++.+++- ++-||+|--+|-..|...|.+| +|-.+|++...+ .||.++-.++.
T Consensus 28 ~s~sals~f~Ak-EeeIErkKmeVrekVq~~Lgrv-eEetkrLa~ire---------------------eLE~l~dP~Rk 84 (159)
T PF04949_consen 28 MSRSALSAFRAK-EEEIERKKMEVREKVQAQLGRV-EEETKRLAEIRE---------------------ELEVLADPMRK 84 (159)
T ss_pred hhHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHH---------------------HHHhhccchHH
Confidence 344556666654 4458888888888888888877 455667666554 46677888888
Q ss_pred hHHHHHHHHHHHH
Q 001550 308 ENQVVANQLERIK 320 (1055)
Q Consensus 308 e~~~~~~~l~~l~ 320 (1055)
|++.+...++.++
T Consensus 85 Ev~~vRkkID~vN 97 (159)
T PF04949_consen 85 EVEMVRKKIDSVN 97 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776643
No 188
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=84.25 E-value=49 Score=36.45 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 350 EISTLKQDLELAKRTHELHCLQLEE 374 (1055)
Q Consensus 350 e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1055)
....+-..++.+|+.|+..|.+++.
T Consensus 114 ~~~~~~~~l~KaKk~Y~~~C~e~e~ 138 (239)
T cd07647 114 NKKELYKKTMKAKKSYEQKCREKDK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777888889998888875
No 189
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.18 E-value=86 Score=40.19 Aligned_cols=32 Identities=50% Similarity=0.670 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Q 001550 836 DVRELMEQVGSLKDIITKKDEEIERLQ-VLKAN 867 (1055)
Q Consensus 836 ~v~eL~~qv~~Lk~~i~~~~eei~~Lq-~l~~~ 867 (1055)
++..|++||-.||..+.-++++|..|+ .||++
T Consensus 584 d~e~l~eqilKLKSLLSTKREQIaTLRTVLKAN 616 (717)
T PF09730_consen 584 DKEELQEQILKLKSLLSTKREQIATLRTVLKAN 616 (717)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554 33433
No 190
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.86 E-value=1.4e+02 Score=38.39 Aligned_cols=18 Identities=44% Similarity=0.399 Sum_probs=8.4
Q ss_pred chhHHHHHHHHHHHHHHH
Q 001550 346 DRDIEISTLKQDLELAKR 363 (1055)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~ 363 (1055)
+...+.+.|+.++..+|-
T Consensus 696 ~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 696 DFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455555555443
No 191
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.47 E-value=0.76 Score=51.12 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=35.7
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
|.|..+-.....+..+|..+..++..+-.|.|. +-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl--~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENL--VLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcE--EEECCCCCcHHHHHHH
Confidence 333333345567888888888888777666554 6699999999998875
No 192
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.35 E-value=87 Score=35.47 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 001550 314 NQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLEL 360 (1055)
Q Consensus 314 ~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~ 360 (1055)
+.+..+..++..++.+.......+..+....+..+.++..++++++.
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~ 84 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK 84 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555554443
No 193
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.31 E-value=58 Score=33.47 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001550 386 KLQELERLLTVSKKKVEELE 405 (1055)
Q Consensus 386 ~l~e~~~~l~~~~~~~~~le 405 (1055)
++.+|+....+..+.++.++
T Consensus 95 kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 95 KVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444443
No 194
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.31 E-value=0.76 Score=48.98 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=32.6
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.|+||....+ .+..++...+.++. .+....|+-||++|+||||....
T Consensus 11 ~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 11 DPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred chhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHH
Confidence 4778776632 44555555554433 45677899999999999998753
No 195
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=83.27 E-value=92 Score=36.18 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 353 TLKQDLELAKRTHELHCLQLEEQIYET 379 (1055)
Q Consensus 353 ~Lk~ele~~k~~~e~~~~~le~~~~~~ 379 (1055)
.|.-+|+..|+.|+.-.+.|--+++++
T Consensus 171 Kl~~qLeeEk~RHeqis~mLilEcKka 197 (561)
T KOG1103|consen 171 KLEMQLEEEKKRHEQISLMLILECKKA 197 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888777666666544
No 196
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=83.24 E-value=77 Score=34.78 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001550 352 STLKQDLELAKRTHELHCLQLEE 374 (1055)
Q Consensus 352 ~~Lk~ele~~k~~~e~~~~~le~ 374 (1055)
......++.+|+.|+..|.+++.
T Consensus 117 ~~~~~~l~KaK~~Y~~~c~~~e~ 139 (236)
T cd07651 117 QDQEKYLEKAREKYEADCSKINS 139 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34456777788888888877764
No 197
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=83.14 E-value=97 Score=38.12 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 345 DDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKV 401 (1055)
Q Consensus 345 ~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~ 401 (1055)
++....+.+|+.|.+.++++|-.-..++.. -..++++|++++..+......+
T Consensus 319 ~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~-----vr~~e~eL~el~~~~~~i~~~~ 370 (570)
T COG4477 319 EKAKENNEHLKEEIERVKESYRLAETELGS-----VRKFEKELKELESVLDEILENI 370 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 444556678888888888887654444332 2356667777777666554443
No 198
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=82.99 E-value=1.9e+02 Score=39.26 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=10.3
Q ss_pred chhHHHHHHHHHHHH
Q 001550 601 GVNYRALNDLFEISE 615 (1055)
Q Consensus 601 GIipRal~~LF~~~~ 615 (1055)
|-|-+++.+|+....
T Consensus 1127 eeiN~iI~elW~~tY 1141 (1294)
T KOG0962|consen 1127 EEINRIIRELWRKTY 1141 (1294)
T ss_pred HHHHHHHHHHHHhcc
Confidence 667777777776544
No 199
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.87 E-value=0.82 Score=49.22 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=31.8
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..|+||.+++ ... ..++..++.++.. .+.+..++-||++|+||||.+..
T Consensus 13 ~~~~~d~f~~-~~~-~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVA-GEN-AELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred Chhhhccccc-CCc-HHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 3588999873 222 3344444444442 23456789999999999998754
No 200
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.55 E-value=1.2e+02 Score=39.08 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 346 DRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLT 395 (1055)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~ 395 (1055)
..+.+++.|||....++..+|++..+..... ....++++++..++..|.
T Consensus 668 ~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~-s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 668 ELDYQIENLKQMEKELQVENEELEEEVQDFI-SEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 3455566666666555555554333332221 123344444444554444
No 201
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.33 E-value=1.3e+02 Score=37.60 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=23.3
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 001550 333 EEQNALRLKKENDDRDIEISTLKQDLELAKRTHEL 367 (1055)
Q Consensus 333 ~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~ 367 (1055)
-+++...+..-.++....+..|..+++.++..|..
T Consensus 304 V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L 338 (560)
T PF06160_consen 304 VEKNLKELYEYLEHAKEQNKELKEELERVSQSYTL 338 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34445555555566777777888888888877654
No 202
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=82.31 E-value=4.5 Score=48.81 Aligned_cols=41 Identities=34% Similarity=0.444 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc
Q 001550 33 STLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV 79 (1055)
Q Consensus 33 ~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv 79 (1055)
+-.+-||..+-. .+....+.+-|+||.||-.+..+|.||+|
T Consensus 391 r~fr~WmNSlgv------~p~vn~~f~Dl~dglVllq~~dki~pg~V 431 (627)
T KOG0046|consen 391 RTFRLWMNSLGV------NPYVNNLFEDLRDGLVLLQLYDKVSPGSV 431 (627)
T ss_pred HHHHHHHHhcCC------cHHHHHHHHhhhhhhHHHHHHHHccCCcc
Confidence 346789987654 45666899999999999999999999999
No 203
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.24 E-value=1e+02 Score=35.61 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=20.5
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCCCCchHHHHHHhHHHHHHHHHHh
Q 001550 226 NASTKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTA 271 (1055)
Q Consensus 226 ~~~~~~l~~~~~~~l~~~~~~~~~~~p~~~~~~l~kvv~e~e~ris 271 (1055)
+.+.-+|-.+|.+.... +|.. .+..-+++|+.++|+
T Consensus 50 ~~~~~sl~~~~~A~~~~--------~P~L--ely~~~c~EL~~~I~ 85 (325)
T PF08317_consen 50 DEEPPSLEDYVVAGYCT--------VPML--ELYQFSCRELKKYIS 85 (325)
T ss_pred CCCCCCHHHHHHHhccC--------ChHH--HHHHHHHHHHHHHHH
Confidence 34555777777765544 7763 344455555555544
No 204
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.23 E-value=1.4e+02 Score=36.93 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 350 EISTLKQDLELAKRTHELHCLQL---EEQIYETKIESQKKLQELERLLTV 396 (1055)
Q Consensus 350 e~~~Lk~ele~~k~~~e~~~~~l---e~~~~~~k~~le~~l~e~~~~l~~ 396 (1055)
|+..|++|.+.++......+.++ ..+..+.+.++..+...++..++.
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~ 324 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQE 324 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666666554433333332 334444444444433333333333
No 205
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=82.01 E-value=3.3 Score=48.13 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.7
Q ss_pred ceeEEeecccCCCcceeee
Q 001550 572 NVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1055)
...|+-||++|+|||++.-
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458899999999998864
No 206
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.98 E-value=51 Score=42.31 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=14.1
Q ss_pred HHHhhHHHHHhhhhhHHHHHHHHHHH
Q 001550 450 TKKNYSKEFDCLGLNLKRLIDAAEKY 475 (1055)
Q Consensus 450 ~~~~~~~e~~~l~~~l~~l~~~~~~y 475 (1055)
..+.|.+|+..+..+++.+....+..
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665555555444443
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.95 E-value=28 Score=41.58 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 372 LEEQIYETKIESQKKLQELERLLTV 396 (1055)
Q Consensus 372 le~~~~~~k~~le~~l~e~~~~l~~ 396 (1055)
++...+++....+.++.||+..|.+
T Consensus 422 ~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 422 LEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444444444333
No 208
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.85 E-value=1.1e+02 Score=35.48 Aligned_cols=52 Identities=25% Similarity=0.354 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 001550 306 TEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLEL 360 (1055)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~ 360 (1055)
++||..++.+..+|+.|....+++....- ....++....+..|..|.++|..
T Consensus 173 EeEN~~LR~Ea~~L~~et~~~EekEqqLv---~dcv~QL~~An~qia~LseELa~ 224 (306)
T PF04849_consen 173 EEENEQLRSEASQLKTETDTYEEKEQQLV---LDCVKQLSEANQQIASLSEELAR 224 (306)
T ss_pred HHHHHHHHHHHHHhhHHHhhccHHHHHHH---HHHHHHhhhcchhHHHHHHHHHH
Confidence 34777777777777777666666544332 23345556667777777777654
No 209
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=81.85 E-value=1.4e+02 Score=36.98 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=29.0
Q ss_pred CCchHHHHHHhHHHHHHHHHHhhhhHHHhhhhhHHHhhH
Q 001550 250 DAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRARE 288 (1055)
Q Consensus 250 ~~p~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~ 288 (1055)
-||..|--=+.+-++++.|++..+.|++..+-+..++..
T Consensus 330 ~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~ 368 (607)
T KOG0240|consen 330 TIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLR 368 (607)
T ss_pred cccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 466666566777789999999999999888766554433
No 210
>PRK10865 protein disaggregation chaperone; Provisional
Probab=81.84 E-value=43 Score=43.87 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=27.0
Q ss_pred eceeeCCCCChHHHHhchHHHHHHhhcCcc------eeEEeecccCCCcceeee
Q 001550 543 FNKVFGPEASQEEVFLDTRPLIRSVLDGYN------VCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 543 FD~VF~~~atQeeVf~~~~pLV~svLdGyN------~~IfAYGQTGSGKTyTM~ 590 (1055)
+.+|+|. ..+-..+...|..+..|.. ++++-+|+||+|||++..
T Consensus 567 ~~~viGQ----~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 567 HHRVIGQ----NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCK 616 (857)
T ss_pred CCeEeCC----HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHH
Confidence 4556653 4444444444444444432 577888999999999753
No 211
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.70 E-value=1.2e+02 Score=38.42 Aligned_cols=19 Identities=5% Similarity=0.008 Sum_probs=9.1
Q ss_pred HHHHhHHHHHHHHHHhhhh
Q 001550 256 ACLLRKVVPLIERRTATQY 274 (1055)
Q Consensus 256 ~~~l~kvv~e~e~ris~q~ 274 (1055)
...+..++.+..+||....
T Consensus 318 ~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 318 NQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555433
No 212
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=81.59 E-value=65 Score=35.87 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 331 KLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1055)
Q Consensus 331 ~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1055)
|..+..+.++.+.. ..+-..++..|+.|+..|.+.+.
T Consensus 102 K~~e~~~eK~qk~~-------~~~~k~l~ksKk~Ye~~Cke~~~ 138 (242)
T cd07671 102 KKYEAVMERVQKSK-------VSLYKKTMESKKTYEQRCREADE 138 (242)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555444443 33456677788888888877664
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.49 E-value=61 Score=38.92 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=3.9
Q ss_pred cHHHHHHHH
Q 001550 91 NVKRFLAAM 99 (1055)
Q Consensus 91 NI~~FL~a~ 99 (1055)
+..-||.+|
T Consensus 87 t~~Dll~F~ 95 (493)
T KOG0804|consen 87 TSHDLLRFC 95 (493)
T ss_pred cHHHHHHHH
Confidence 344444444
No 214
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.47 E-value=19 Score=42.53 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.1
Q ss_pred ceeEEeecccCCCcceee
Q 001550 572 NVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM 589 (1055)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345889999999999875
No 215
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.26 E-value=0.94 Score=52.07 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=26.2
Q ss_pred ChHHHHhchHHHHHHhhc-CcceeEEeecccCCCcceeee
Q 001550 552 SQEEVFLDTRPLIRSVLD-GYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 552 tQeeVf~~~~pLV~svLd-GyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..++-++.....+..++. +...+++-||++|+|||+++.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 344444444445555554 455689999999999998864
No 216
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=81.12 E-value=0.71 Score=54.68 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=32.1
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..|+||..... .++.-.|..+..+-+..-.-||. ||-||.+|+||||-|..
T Consensus 82 ~~ytFdnFv~g-~~N~~A~aa~~~va~~~g~~~np-lfi~G~~GlGKTHLl~A 132 (408)
T COG0593 82 PKYTFDNFVVG-PSNRLAYAAAKAVAENPGGAYNP-LFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCchhheeeC-CchHHHHHHHHHHHhccCCcCCc-EEEECCCCCCHHHHHHH
Confidence 35999986643 44444444333332222123554 78999999999999964
No 217
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.86 E-value=2.5e+02 Score=39.00 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.5
Q ss_pred ccccCchhhh
Q 001550 773 VPYRNSKLTQ 782 (1055)
Q Consensus 773 VPYRdSKLTr 782 (1055)
+||....|..
T Consensus 839 L~a~~~~l~~ 848 (1353)
T TIGR02680 839 LPTDPDALEA 848 (1353)
T ss_pred CCCChhHHHH
Confidence 4444444444
No 218
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=80.52 E-value=1.3e+02 Score=37.39 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHh---hhhhhhhhhccCCE
Q 001550 444 KHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAEN---RRLYNEVQDLKGNI 496 (1055)
Q Consensus 444 k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~er---RkL~N~vqelKGnI 496 (1055)
+..|...+..+...+..|..+++.|..+.......+..+ ..|+..+..|+..+
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l 421 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSAL 421 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555556666666666665555544443333 24555666665444
No 219
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=80.47 E-value=1.4e+02 Score=36.03 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=14.8
Q ss_pred HHhhhhccchhhHHHHHHHHHHHHHHhh
Q 001550 297 VLETLTVGTTEENQVVANQLERIKTEKT 324 (1055)
Q Consensus 297 ~le~l~~~~~ee~~~~~~~l~~l~~e~~ 324 (1055)
.||.+.....-+++.|..-++|.|.|++
T Consensus 116 eLEe~C~eQAakIeQLNrLVqQyK~ErE 143 (488)
T PF06548_consen 116 ELEEVCAEQAAKIEQLNRLVQQYKHERE 143 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4455555555555555555555555443
No 220
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.33 E-value=91 Score=33.70 Aligned_cols=57 Identities=35% Similarity=0.411 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001550 347 RDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSES 410 (1055)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~ 410 (1055)
.+.++..++.++..+++..+...+ .-..+|..++..++..++....++..|+...+.
T Consensus 94 ~~~el~k~~~~l~~L~~L~~dknL-------~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 94 KDEELLKTKDELKHLKKLSEDKNL-------AEREELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554443332111 114566777777777777777777777654433
No 221
>PRK06526 transposase; Provisional
Probab=80.23 E-value=0.64 Score=51.75 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=25.8
Q ss_pred eCCCCChHHHHhc-hHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 547 FGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 547 F~~~atQeeVf~~-~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
+.+.-++..+..- +.+.|+ .+.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 3344445444432 234443 4555 68899999999999875
No 222
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.79 E-value=81 Score=39.93 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001550 381 IESQKKLQELERLLTVSKKKVE 402 (1055)
Q Consensus 381 ~~le~~l~e~~~~l~~~~~~~~ 402 (1055)
.+++..++++-.+|+..+.+.+
T Consensus 166 ~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 166 RKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444433
No 223
>PRK08181 transposase; Validated
Probab=79.73 E-value=1 Score=50.53 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.0
Q ss_pred cCcceeEEeecccCCCcceeeec
Q 001550 569 DGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 569 dGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 5665 78999999999999876
No 224
>PF15294 Leu_zip: Leucine zipper
Probab=79.48 E-value=52 Score=37.39 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 001550 312 VANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKR-----THELHCLQLEEQIYETKIESQKK 386 (1055)
Q Consensus 312 ~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~-----~~e~~~~~le~~~~~~k~~le~~ 386 (1055)
+..++..|+.|..++.++.+..+......++|+...+..+..|+-..-..+. ........||.+...++.++++-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 4455566667777777777766666666666665555555554442221111 12233444555555555555554
Q ss_pred HHHHHH
Q 001550 387 LQELER 392 (1055)
Q Consensus 387 l~e~~~ 392 (1055)
+.+.+.
T Consensus 210 ~~d~~~ 215 (278)
T PF15294_consen 210 LQDKES 215 (278)
T ss_pred HHHHHH
Confidence 444443
No 225
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=79.31 E-value=5.9 Score=47.05 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=30.7
Q ss_pred eeeeceeeCCCCChHHHHhch-HHHHH-Hhhc--C--cceeEEeecccCCCcceeee
Q 001550 540 LFKFNKVFGPEASQEEVFLDT-RPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~-~pLV~-svLd--G--yN~~IfAYGQTGSGKTyTM~ 590 (1055)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ....|+-||++|+|||+..-
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 356676666554444444433 34432 2333 2 24568889999999998763
No 226
>PRK08727 hypothetical protein; Validated
Probab=79.28 E-value=1.1 Score=48.88 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=27.8
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCc-ceeEEeecccCCCcceeeec
Q 001550 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGY-NVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGy-N~~IfAYGQTGSGKTyTM~G 591 (1055)
.|+||.-+...+ + ....+.++ ..|+ .-.|+-||++|+||||.+..
T Consensus 15 ~~~f~~f~~~~~-n--~~~~~~~~----~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 15 DQRFDSYIAAPD-G--LLAQLQAL----AAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred cCChhhccCCcH-H--HHHHHHHH----HhccCCCeEEEECCCCCCHHHHHHH
Confidence 378888664333 2 22222222 2233 24599999999999999865
No 227
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.25 E-value=1.5e+02 Score=37.63 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=11.7
Q ss_pred eeEEEecCCCccccCCcchhhh
Q 001550 724 SLHLIDLAGSERVDRSEATGDR 745 (1055)
Q Consensus 724 kL~LVDLAGSER~~ks~~~g~r 745 (1055)
.+.++|-.|.+.....-+.|++
T Consensus 536 ~~~l~~~~g~~~~~~~lS~Ge~ 557 (650)
T TIGR03185 536 AVSLYDNNGKHIDKERLSAGER 557 (650)
T ss_pred eEEEEcCCCCCcCCCCCCHHHH
Confidence 4556666666554444455543
No 228
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.05 E-value=1.7e+02 Score=36.12 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHhhhhHHHhhhhhHHHh
Q 001550 257 CLLRKVVPLIERRTATQYQNFKNQNNLFRA 286 (1055)
Q Consensus 257 ~~l~kvv~e~e~ris~q~~~~~~q~~~~~~ 286 (1055)
+||++-+.+.|.||-||.--|..--.-++.
T Consensus 246 ~llr~t~~~~e~riEtqkqtl~ardesIkk 275 (654)
T KOG4809|consen 246 FLLRSTDPSGEQRIETQKQTLDARDESIKK 275 (654)
T ss_pred HHHHhcCchHHHHHHHHHhhhhhHHHHHHH
Confidence 799999999999999998766554333333
No 229
>PLN02939 transferase, transferring glycosyl groups
Probab=78.83 E-value=1.9e+02 Score=38.37 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhhhccc
Q 001550 289 EKYKSRIRVLETLTVGT 305 (1055)
Q Consensus 289 ~~~~~~~~~le~l~~~~ 305 (1055)
|..|..|++||.-.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~ 182 (977)
T PLN02939 166 EALQGKINILEMRLSET 182 (977)
T ss_pred HHHHhhHHHHHHHhhhh
Confidence 34466777777655554
No 230
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=78.81 E-value=0.87 Score=46.05 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=17.1
Q ss_pred cceeEEeecccCCCcceeeec
Q 001550 571 YNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G 591 (1055)
.+.-++..++||||||++|..
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhh
Confidence 355567778999999999986
No 231
>PRK08939 primosomal protein DnaI; Reviewed
Probab=78.76 E-value=0.87 Score=52.03 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=34.0
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcC-cceeEEeecccCCCcceeeec
Q 001550 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDG-YNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG-yN~~IfAYGQTGSGKTyTM~G 591 (1055)
.+||.+-.....+..++..+...++....| ..-.++-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455554333335666666666667665543 234689999999999999876
No 232
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=78.68 E-value=1.8e+02 Score=36.18 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=12.1
Q ss_pred CccchhHHHHHHHHHHH
Q 001550 598 EDWGVNYRALNDLFEIS 614 (1055)
Q Consensus 598 ~~~GIipRal~~LF~~~ 614 (1055)
++.|++-+++..||..+
T Consensus 491 ~~~g~~~~~~s~~~S~l 507 (582)
T PF09731_consen 491 EGAGLLGHLLSYLFSLL 507 (582)
T ss_pred CCCCHHHHHHHHHHhee
Confidence 34588888888887643
No 233
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.45 E-value=1e+02 Score=35.89 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=10.1
Q ss_pred HHHHHhhhhhhhhhhc
Q 001550 477 VILAENRRLYNEVQDL 492 (1055)
Q Consensus 477 ~~l~erRkL~N~vqel 492 (1055)
.++.|||-|+.+|..+
T Consensus 193 aLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 193 ALIMENRYLKERLKQL 208 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556788777655544
No 234
>PLN02939 transferase, transferring glycosyl groups
Probab=78.23 E-value=2.5e+02 Score=37.47 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001550 381 IESQKKLQELERLLTVSKKKVE 402 (1055)
Q Consensus 381 ~~le~~l~e~~~~l~~~~~~~~ 402 (1055)
.-|+.-++++|..+-.....+-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~ 288 (977)
T PLN02939 267 SLLDASLRELESKFIVAQEDVS 288 (977)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 3445555666655544444333
No 235
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=77.61 E-value=11 Score=47.40 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=21.7
Q ss_pred HHHHhhcCcceeEEeecccCCCcceee
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1055)
++..+..++...|+-||++|+|||+..
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 455556678878889999999999875
No 236
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.55 E-value=1.1e+02 Score=33.13 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001550 383 SQKKLQELERLLTVSKKKVEELESLS 408 (1055)
Q Consensus 383 le~~l~e~~~~l~~~~~~~~~le~~~ 408 (1055)
+++++++++-+-+.+..++..++.-+
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444433
No 237
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=77.28 E-value=59 Score=36.86 Aligned_cols=59 Identities=29% Similarity=0.440 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 001550 346 DRDIEISTLKQDLELAKRTH-ELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQ 413 (1055)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~~~-e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~k~~ 413 (1055)
+.+.||..||.+|.-+++.| |+.|...|.+. -|||.+.++..++.-|+.+.+-...|.+
T Consensus 86 dRetEI~eLksQL~RMrEDWIEEECHRVEAQL---------ALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 86 DRETEIDELKSQLARMREDWIEEECHRVEAQL---------ALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 36789999999999999885 56677766654 3555555555555555554443333443
No 238
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.24 E-value=1.8e+02 Score=35.27 Aligned_cols=105 Identities=18% Similarity=0.249 Sum_probs=56.4
Q ss_pred HHhhhhccchhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHhhhcc-----cchh-HHHHHHHHHHHHHHHHHH
Q 001550 297 VLETLTVGTTEENQVVANQLERIK----TEKTNIAQKEKLEEQNALRLKKEN-----DDRD-IEISTLKQDLELAKRTHE 366 (1055)
Q Consensus 297 ~le~l~~~~~ee~~~~~~~l~~l~----~e~~k~eek~~~~e~~~~~~~~e~-----~~~~-~e~~~Lk~ele~~k~~~e 366 (1055)
.++.|+-|.. -++.+...+..+. .-...|+.-+.-..+...+|..+. ++.. .+|..|.++|+.+-+.++
T Consensus 284 l~e~l~dgea-yLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 284 LIEALDDGEA-YLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHhcCChHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665542 3344444443322 233456666555555555555544 2333 677888888888777666
Q ss_pred HHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001550 367 LHCL-------QLEEQIYET-KIESQKKLQELERLLTVSKKKVE 402 (1055)
Q Consensus 367 ~~~~-------~le~~~~~~-k~~le~~l~e~~~~l~~~~~~~~ 402 (1055)
.... +++....+. +..+.++++|+...+.+++.++-
T Consensus 363 ~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~ 406 (521)
T KOG1937|consen 363 SNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIV 406 (521)
T ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3322 222221111 44677888887766655555443
No 239
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.81 E-value=23 Score=38.54 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001550 383 SQKKLQELERLLTVSKKKVEEL 404 (1055)
Q Consensus 383 le~~l~e~~~~l~~~~~~~~~l 404 (1055)
|+++.++++.+++.+++++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 240
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=76.79 E-value=1.5 Score=51.44 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=22.2
Q ss_pred hHHHHHHhhcCccee-EEeecccCCCcceee
Q 001550 560 TRPLIRSVLDGYNVC-IFAYGQTGSGKTYTM 589 (1055)
Q Consensus 560 ~~pLV~svLdGyN~~-IfAYGQTGSGKTyTM 589 (1055)
+...+..++.|.-.. ++.||.||+|||.|+
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 344466666665444 999999999999886
No 241
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=76.65 E-value=1.7 Score=50.50 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=24.5
Q ss_pred HHHHhchHHHHHHhhc-CcceeEEeecccCCCcceeee
Q 001550 554 EEVFLDTRPLIRSVLD-GYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 554 eeVf~~~~pLV~svLd-GyN~~IfAYGQTGSGKTyTM~ 590 (1055)
++-+......+..++. +...+++-||++|+|||+++.
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 3344444444545554 445678999999999999864
No 242
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.41 E-value=26 Score=43.35 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=19.2
Q ss_pred HHHHHHchhhHHHHHHHhhhcCCC
Q 001550 55 EKLRACLVDGTVLCLVLNKLSPDS 78 (1055)
Q Consensus 55 edf~~~LrDGviLC~L~N~l~Pgs 78 (1055)
|++.+...|+-=|-+++..+-||.
T Consensus 57 DnvyEL~~~~~~li~il~~lP~~t 80 (652)
T COG2433 57 DNVYELGADKRDLIRILKRLPEGT 80 (652)
T ss_pred ccHHHHhcChhHHHHHHHhCCCCc
Confidence 467888888888999999987654
No 243
>PRK12704 phosphodiesterase; Provisional
Probab=76.41 E-value=2.1e+02 Score=35.60 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=8.8
Q ss_pred ceeeCCCCChHHHHhchHHHH
Q 001550 544 NKVFGPEASQEEVFLDTRPLI 564 (1055)
Q Consensus 544 D~VF~~~atQeeVf~~~~pLV 564 (1055)
|....|. .-++++..+..-+
T Consensus 276 dg~i~P~-~iee~~~~~~~~~ 295 (520)
T PRK12704 276 DGRIHPA-RIEEMVEKARKEV 295 (520)
T ss_pred cCCcCCC-CHHHHHHHHHHHH
Confidence 3333333 3455555543333
No 244
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=76.22 E-value=2.5 Score=50.36 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc-ccC---------CCCCCCcccHHHHHHHHHh
Q 001550 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV-EMG---------ANFEPGPANVKRFLAAMDD 101 (1055)
Q Consensus 32 ~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv-~k~---------~~~~~~~eNI~~FL~a~~~ 101 (1055)
+...+-|=...+| .-.| +.+.-||...-|||.++|+|+|.-.|..+ +.+ .+.++.++|-+.|+...+-
T Consensus 127 ~~~lllwc~~~t~-~y~p-~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi~rl 204 (612)
T COG5069 127 HINLLLWCDEDTG-GYKP-EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIARL 204 (612)
T ss_pred hhhhheecccccc-CcCC-CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhchHhh
Confidence 3456667666666 3344 55667899999999999999999999966 222 2224446777777777777
Q ss_pred CCCCC
Q 001550 102 MGLPR 106 (1055)
Q Consensus 102 ~Glp~ 106 (1055)
||+-+
T Consensus 205 i~ved 209 (612)
T COG5069 205 IGVED 209 (612)
T ss_pred cCcce
Confidence 77655
No 245
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=76.12 E-value=2.1 Score=44.54 Aligned_cols=86 Identities=21% Similarity=0.419 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcccCCCC------CCCcccHHHH-HHHHHhCCCCCC
Q 001550 35 LVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGANF------EPGPANVKRF-LAAMDDMGLPRF 107 (1055)
Q Consensus 35 ~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~k~~~~------~~~~eNI~~F-L~a~~~~Glp~F 107 (1055)
+..||.. ++ ...+. ..++..+.||++++.++.+..|..|. ..+| ...+.|-..| .+.+..+|++ |
T Consensus 1 l~~WL~~-l~-ls~~~----~n~~rDfsdG~lvAEIl~~y~p~~vd-lh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~-l 72 (158)
T PF06294_consen 1 LLKWLQS-LD-LSRPP----KNIRRDFSDGYLVAEILSRYYPKLVD-LHNYSNGNSVAQKLNNWETLNEKVLKKLGIK-L 72 (158)
T ss_dssp HHHHHHH-S---S--S----S-HHHHHTTSHHHHHHHHHH-TTT----SS----SSHHHHHHHHHHHHHHTTGGGT----
T ss_pred ChHHHhc-CC-CCCCC----CchHHHcccccHHHHHHHHHCCCCcc-ccccCCCCCHHHHHHHHHHHHHHHHHHcCCC-C
Confidence 4679999 44 33332 25788899999999999999999882 2222 2234588888 7888999986 6
Q ss_pred cccccc------CCCchHHHHHHHHHH
Q 001550 108 ELSDLE------QGNMAPVLQCLRSLR 128 (1055)
Q Consensus 108 e~~DLE------~kn~~~Vv~cL~aL~ 128 (1055)
...+++ .|-...++.+|+..-
T Consensus 73 ~~~~i~~i~~~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 73 DKEDIEGIINCKPGAAESLLYQLYTKL 99 (158)
T ss_dssp -HHHHHHHHTT-TTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 666553 234566666666554
No 246
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.44 E-value=30 Score=39.93 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 001550 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAK 362 (1055)
Q Consensus 326 ~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k 362 (1055)
++++.+...+++..|.++.+....|+..|+.+++.++
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455555555556666666666555544
No 247
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.38 E-value=0.93 Score=42.72 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.3
Q ss_pred EEeecccCCCcceeeec
Q 001550 575 IFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 575 IfAYGQTGSGKTyTM~G 591 (1055)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999976
No 248
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=74.91 E-value=1.6 Score=41.61 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.1
Q ss_pred cceeEEeecccCCCcceeee
Q 001550 571 YNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~ 590 (1055)
....++.+|++|+|||+++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 44568899999999997653
No 249
>PRK12704 phosphodiesterase; Provisional
Probab=74.73 E-value=1.9e+02 Score=35.95 Aligned_cols=13 Identities=15% Similarity=0.140 Sum_probs=7.6
Q ss_pred hhhhhhhhhhccC
Q 001550 482 NRRLYNEVQDLKG 494 (1055)
Q Consensus 482 rRkL~N~vqelKG 494 (1055)
|+-+-..+|..-+
T Consensus 191 ~~i~~~a~qr~a~ 203 (520)
T PRK12704 191 KEILAQAIQRCAA 203 (520)
T ss_pred HHHHHHHHHhhcc
Confidence 4556666666554
No 250
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.60 E-value=1.2e+02 Score=31.91 Aligned_cols=11 Identities=45% Similarity=0.468 Sum_probs=5.0
Q ss_pred HHHHHHhHHHH
Q 001550 254 RVACLLRKVVP 264 (1055)
Q Consensus 254 ~~~~~l~kvv~ 264 (1055)
+|..|+=|||-
T Consensus 23 ~v~~LmP~VV~ 33 (158)
T PF09744_consen 23 AVKGLMPKVVR 33 (158)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 251
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.53 E-value=34 Score=42.40 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=18.8
Q ss_pred HHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHH
Q 001550 292 KSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQK 329 (1055)
Q Consensus 292 ~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek 329 (1055)
..+++-++...-.-++|+..|...+.+++.+.++++.+
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~ 458 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESE 458 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343333334446666666666665555554443
No 252
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.11 E-value=3e+02 Score=36.43 Aligned_cols=10 Identities=40% Similarity=0.441 Sum_probs=6.7
Q ss_pred HhHHHHHHHH
Q 001550 754 KSLSALGDVI 763 (1055)
Q Consensus 754 kSLsaLg~VI 763 (1055)
||+-||.-++
T Consensus 1103 KsvvALaLIF 1112 (1200)
T KOG0964|consen 1103 KSVVALALIF 1112 (1200)
T ss_pred HHHHHHHHHH
Confidence 6788876544
No 253
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.11 E-value=1.6e+02 Score=33.14 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=31.1
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001550 337 ALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1055)
Q Consensus 337 ~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~ 407 (1055)
+..+...+-+...++..|+.|++..|.+.+.+..+-= .....|+..+.-.....+.+++-|++||..
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y----~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFY----QQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444445555566666665555554333321 122334444444444445555555555543
No 254
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.46 E-value=1.4 Score=54.49 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=24.8
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..+..++..-++.|+..|+||||||+||..
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 345666777788999999999999999864
No 255
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=73.34 E-value=6.3 Score=43.96 Aligned_cols=98 Identities=19% Similarity=0.371 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc--ccCCCC-CCCcccHHHHHHHH-HhCCCCC
Q 001550 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV--EMGANF-EPGPANVKRFLAAM-DDMGLPR 106 (1055)
Q Consensus 31 r~~e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv--~k~~~~-~~~~eNI~~FL~a~-~~~Glp~ 106 (1055)
...-+..||++++-.+.+-. .+|.+-|-||.||-+|..++..--+ +.+... ..+-.-+.--|.++ +.+++|.
T Consensus 91 l~kvLi~WiN~~L~~erIvV----r~LeEDlfDGqilqkL~ekL~~~klev~evtqse~~QkqKLq~Vleavnr~L~~~~ 166 (365)
T KOG3631|consen 91 LVKVLIDWINDVLVPERIVV----RSLEEDLFDGQILQKLFEKLAALKLEVAEVTQSEIGQKQKLQTVLEAVNRSLQLPE 166 (365)
T ss_pred HHHHHHHHHHHhhcchhhhH----HhhHHhhhhhHHHHHHHHHHHhhhccchhhhhhhHHHHHHHHHHHHHHHHHhcCch
Confidence 33457899999987565532 3577888899999999999853222 111100 00122566778888 7899999
Q ss_pred Ccc---ccc-cCCCchHHHHHHHHHHhhhh
Q 001550 107 FEL---SDL-EQGNMAPVLQCLRSLRASFS 132 (1055)
Q Consensus 107 Fe~---~DL-E~kn~~~Vv~cL~aL~~~~~ 132 (1055)
.++ +|+ -++|+..++.-|.+|..|+.
T Consensus 167 ~q~kWsvdsIh~Kdl~ailhLLVaLa~~fr 196 (365)
T KOG3631|consen 167 WQAKWSVDSIHNKDLVAILHLLVALAKHFR 196 (365)
T ss_pred hhhccchhhhccchHHHHHHHHHHHHHHcC
Confidence 444 566 89999999999999998885
No 256
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.30 E-value=1.2e+02 Score=31.92 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 001550 350 EISTLKQDLELAKR 363 (1055)
Q Consensus 350 e~~~Lk~ele~~k~ 363 (1055)
.+.++..++...+.
T Consensus 103 ~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 103 RIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 257
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.19 E-value=1e+02 Score=36.81 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=16.7
Q ss_pred HHhHhhHHHhhHHHHHHHHHHHHHhHHHH
Q 001550 419 EHSYQSFMGCQLGVIQDLRVAFESTKHEV 447 (1055)
Q Consensus 419 ~~~~~~~~~~Q~~~l~el~~~~~~~k~ei 447 (1055)
|..+..+++.++.++..|+.++..+...|
T Consensus 264 EeqlNd~~elHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 264 EEQLNDLTELHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33455556666666666666665555444
No 258
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=73.10 E-value=0.96 Score=43.71 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=13.4
Q ss_pred ceeEEeecccCCCcceeee
Q 001550 572 NVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1055)
+.+++.||++|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4578999999999998763
No 259
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.06 E-value=1.6 Score=53.03 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.6
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..+..++..-++.|+..|+||||||+||..
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 355566777778899999999999999964
No 260
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=73.04 E-value=1.1 Score=54.10 Aligned_cols=58 Identities=26% Similarity=0.294 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 343 ENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEEL 404 (1055)
Q Consensus 343 e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~l 404 (1055)
+.+.++.||..||+.|....++.|+....|..+ +.++.+.+.++...|++..++++..
T Consensus 370 ~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~Q----Eqqt~Kll~qyq~RLedSE~RLr~Q 427 (495)
T PF12004_consen 370 EVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQ----EQQTQKLLLQYQARLEDSEERLRRQ 427 (495)
T ss_dssp --------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 444588899999999999998877766666544 2344555666666666666555543
No 261
>PRK10436 hypothetical protein; Provisional
Probab=73.04 E-value=1.5 Score=52.90 Aligned_cols=30 Identities=37% Similarity=0.427 Sum_probs=24.3
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..+..++..-++.|+..|+||||||+||.-
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 345556667788999999999999999964
No 262
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.51 E-value=47 Score=40.67 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=18.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 345 DDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1055)
Q Consensus 345 ~~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1055)
......+..|++||+.+++.||.+...|-.
T Consensus 465 ~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 465 KEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334445666667777777777766666544
No 263
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=72.14 E-value=2.1 Score=51.45 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=35.4
Q ss_pred ceeeeeceeeCCCCChHHHHhchHHHHHHh--hcC--cceeEEeecccCCCcceeeec
Q 001550 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSV--LDG--YNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~~~pLV~sv--LdG--yN~~IfAYGQTGSGKTyTM~G 591 (1055)
...|+||.-+-. .++...|..+..+.+.. ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 346999997743 35556666666665433 223 454 67899999999999865
No 264
>PRK06921 hypothetical protein; Provisional
Probab=71.92 E-value=2.8 Score=46.91 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=26.6
Q ss_pred HHHHhchHHHHHHhhc---CcceeEEeecccCCCcceeeec
Q 001550 554 EEVFLDTRPLIRSVLD---GYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 554 eeVf~~~~pLV~svLd---GyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..++..+...++.+-. +..-.|+-||++|+||||.+..
T Consensus 96 ~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 96 KDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3455556667766532 2345688999999999999875
No 265
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.91 E-value=2.4e+02 Score=35.00 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=8.3
Q ss_pred hhhhhhhhhhccC
Q 001550 482 NRRLYNEVQDLKG 494 (1055)
Q Consensus 482 rRkL~N~vqelKG 494 (1055)
|+-+-..+|..-+
T Consensus 185 ~~i~~~aiqr~a~ 197 (514)
T TIGR03319 185 KEILATAIQRYAG 197 (514)
T ss_pred HHHHHHHHHhccc
Confidence 4556677776665
No 266
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=71.90 E-value=1.7e+02 Score=32.59 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 333 EEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1055)
Q Consensus 333 ~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1055)
.++.+.++.+. ...+-..++..|+.|+..|.+.+.
T Consensus 105 ~e~~~ek~~K~-------~~~~~k~~~ksKk~Ye~~Cke~~~ 139 (240)
T cd07672 105 IELIMDAIHKQ-------RAMQFKKTMESKKNYEQKCRDKDE 139 (240)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555543 233444667788888888877553
No 267
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=71.89 E-value=1.4e+02 Score=31.56 Aligned_cols=15 Identities=13% Similarity=0.567 Sum_probs=8.8
Q ss_pred hHHHHHHHHHhHhhh
Q 001550 231 SLFNIVNRILDECVE 245 (1055)
Q Consensus 231 ~l~~~~~~~l~~~~~ 245 (1055)
.+..++..+|.++++
T Consensus 23 ~i~~~l~~~l~~~~~ 37 (177)
T PF07798_consen 23 AIMKALREVLNDSLE 37 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666543
No 268
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=71.78 E-value=1.4e+02 Score=31.43 Aligned_cols=87 Identities=18% Similarity=0.281 Sum_probs=43.7
Q ss_pred hhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHH
Q 001550 272 TQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEI 351 (1055)
Q Consensus 272 ~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~ 351 (1055)
++.+.++-.+...+....+.+.+++..|.+.-|-. .-...||+.|.....++...-..++.+|..-.......+
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~------~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L 79 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLH------LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQIL 79 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666554432 123445555555444444333444555554444444445
Q ss_pred HHHHHHHHHHHHH
Q 001550 352 STLKQDLELAKRT 364 (1055)
Q Consensus 352 ~~Lk~ele~~k~~ 364 (1055)
.+.|+.|..+...
T Consensus 80 ~h~keKl~~~~~~ 92 (177)
T PF13870_consen 80 THVKEKLHFLSEE 92 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
No 269
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=71.36 E-value=1.9 Score=43.34 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=21.8
Q ss_pred HHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
++..++.|.| ++..|+||||||+....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 4556667777 77899999999999875
No 270
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=71.00 E-value=1.5 Score=56.30 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=23.4
Q ss_pred chHHHHHHhhc--CcceeEEeecccCCCcceeee
Q 001550 559 DTRPLIRSVLD--GYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 559 ~~~pLV~svLd--GyN~~IfAYGQTGSGKTyTM~ 590 (1055)
.+..++..++. |-+.|||.||++|+|||.|+-
T Consensus 766 eLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 766 EVHGFLESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred HHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 34455555554 445678999999999999874
No 271
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=70.92 E-value=1.9 Score=50.02 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=21.5
Q ss_pred HHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.+..++.--.+.|+-.|+||||||+||..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 44444443357789999999999999854
No 272
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=70.83 E-value=1.4 Score=41.46 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.4
Q ss_pred eeEEeecccCCCcceeeec
Q 001550 573 VCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1055)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999999865
No 273
>PF13245 AAA_19: Part of AAA domain
Probab=70.81 E-value=1.7 Score=39.53 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=18.7
Q ss_pred HHHhhcCcceeEEeecccCCCcceeeec
Q 001550 564 IRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 564 V~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
|..++. -+..+...|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 455555 333344599999999999764
No 274
>PF12846 AAA_10: AAA-like domain
Probab=70.59 E-value=1.4 Score=48.44 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=16.6
Q ss_pred ceeEEeecccCCCcceeee
Q 001550 572 NVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1055)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5678899999999999885
No 275
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=70.34 E-value=1.8 Score=48.93 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=27.8
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
-+||.+.+ |+++......++. .|....++-||++|+|||++...
T Consensus 12 ~~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 12 ALLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred CcHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHH
Confidence 35777664 4445444333332 34434578899999999998743
No 276
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.33 E-value=1.5 Score=47.28 Aligned_cols=17 Identities=47% Similarity=0.720 Sum_probs=14.6
Q ss_pred eEEeecccCCCcceeee
Q 001550 574 CIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM~ 590 (1055)
-+..+|.||||||+|+-
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45678999999999985
No 277
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=70.27 E-value=3.1e+02 Score=34.95 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=40.5
Q ss_pred CCCcchHHHHHHHHHhHhhhhcC------CCCchHHHHH---HhHHHHHHHHH----HhhhhH---HHhhhhhHHHhhHH
Q 001550 226 NASTKSLFNIVNRILDECVERKN------GDAPHRVACL---LRKVVPLIERR----TATQYQ---NFKNQNNLFRAREE 289 (1055)
Q Consensus 226 ~~~~~~l~~~~~~~l~~~~~~~~------~~~p~~~~~~---l~kvv~e~e~r----is~q~~---~~~~q~~~~~~~~~ 289 (1055)
|..|+-|-.++..-...+.|+.. +|--+++..+ +.|.|..||-= =..|.+ .++.+..-|.-.++
T Consensus 150 nnaTR~lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~lee 229 (786)
T PF05483_consen 150 NNATRHLCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEE 229 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888877766665543 2333333332 33455555421 122222 24555556666777
Q ss_pred HHHHHHHHHhh
Q 001550 290 KYKSRIRVLET 300 (1055)
Q Consensus 290 ~~~~~~~~le~ 300 (1055)
.|+..+++-|-
T Consensus 230 ey~~E~n~kEk 240 (786)
T PF05483_consen 230 EYKKEVNDKEK 240 (786)
T ss_pred HHHHHhhhHHH
Confidence 77666655443
No 278
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=70.19 E-value=2.8e+02 Score=34.40 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 001550 468 LIDAAEKYHV 477 (1055)
Q Consensus 468 l~~~~~~y~~ 477 (1055)
++.|..+|..
T Consensus 188 ~~~aiqr~a~ 197 (514)
T TIGR03319 188 LATAIQRYAG 197 (514)
T ss_pred HHHHHHhccc
Confidence 3445555543
No 279
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=70.13 E-value=75 Score=36.45 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHH
Q 001550 275 QNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIK 320 (1055)
Q Consensus 275 ~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~ 320 (1055)
|.+.+||.-++...|-||...++|+.+..+.--|++.|...+.+|.
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELE 48 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELE 48 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556566666677777777777777776667777666555543
No 280
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=70.10 E-value=1.5 Score=46.74 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.5
Q ss_pred ceeEEeecccCCCcceeee
Q 001550 572 NVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1055)
++.|+-.|+||||||+|+.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999999985
No 281
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=69.73 E-value=1.6e+02 Score=32.03 Aligned_cols=120 Identities=21% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHH---HhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHH-------------HHhh
Q 001550 261 KVVPLIERR---TATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIK-------------TEKT 324 (1055)
Q Consensus 261 kvv~e~e~r---is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~-------------~e~~ 324 (1055)
.++.++.+. |+.-...+...+..+...+..|+++-..|+. .+.++|.+.+ .+.-
T Consensus 9 ~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~----------ElI~ELkqsKklydnYYkL~~KY~~LK 78 (196)
T PF15272_consen 9 ELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQ----------ELINELKQSKKLYDNYYKLYSKYQELK 78 (196)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHhhhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 325 NIAQKEKLEEQNALRLKKEN----DDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLL 394 (1055)
Q Consensus 325 k~eek~~~~e~~~~~~~~e~----~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l 394 (1055)
+.-.+.......+..|.++. ...+.+|..+.++| -..+..+.+++.+.+.-+...|.+++|++..|
T Consensus 79 ~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l----~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L 148 (196)
T PF15272_consen 79 KSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDEL----LSLELRNKELQNERERERIAYESRIADLERQL 148 (196)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 282
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=69.72 E-value=1.9e+02 Score=32.31 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=7.7
Q ss_pred chHHHHHHhHHHHHHHHH
Q 001550 252 PHRVACLLRKVVPLIERR 269 (1055)
Q Consensus 252 p~~~~~~l~kvv~e~e~r 269 (1055)
|+.+.+-+.....++...
T Consensus 19 ~~~l~~~~e~~~~~L~~~ 36 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSY 36 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 283
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.57 E-value=73 Score=36.17 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHH-HHHhhhhhhhhhhc
Q 001550 431 GVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVI-LAENRRLYNEVQDL 492 (1055)
Q Consensus 431 ~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~-l~erRkL~N~vqel 492 (1055)
-+|+|.|.+++++|+-|..++....+. =++ ..+|-.- -..|+||.+-+|-|
T Consensus 117 LALKEARkEIkQLkQvieTmrssL~ek-------DkG----iQKYFvDINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 117 LALKEARKEIKQLKQVIETMRSSLAEK-------DKG----IQKYFVDINIQNKKLESLLQSM 168 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchh-------hhh----HHHHHhhhhhhHhHHHHHHHHH
Confidence 346777777777776666555332221 111 1233222 24678888777744
No 284
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=69.50 E-value=3.3e+02 Score=35.02 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=9.3
Q ss_pred CchHHHHHHhHHHHHH
Q 001550 251 APHRVACLLRKVVPLI 266 (1055)
Q Consensus 251 ~p~~~~~~l~kvv~e~ 266 (1055)
-|...+.+++.+++.|
T Consensus 165 dP~~Aa~iaN~la~~Y 180 (754)
T TIGR01005 165 DPKLAAAIPDAIAAAY 180 (754)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3555556666666655
No 285
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.26 E-value=1.9e+02 Score=32.15 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=4.5
Q ss_pred hhhhhhhhhh
Q 001550 482 NRRLYNEVQD 491 (1055)
Q Consensus 482 rRkL~N~vqe 491 (1055)
|+.+..++..
T Consensus 146 r~~l~~~l~~ 155 (302)
T PF10186_consen 146 RRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 286
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=69.25 E-value=1.8e+02 Score=31.79 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=12.8
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q 001550 343 ENDDRDIEISTLKQDLELAKRT 364 (1055)
Q Consensus 343 e~~~~~~e~~~Lk~ele~~k~~ 364 (1055)
|......||-+||.+|..++..
T Consensus 25 E~~~K~~Eiv~Lr~ql~e~~~~ 46 (202)
T PF06818_consen 25 EVNQKDSEIVSLRAQLRELRAE 46 (202)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3344555666677666665544
No 287
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=68.87 E-value=2.2 Score=50.19 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=20.3
Q ss_pred HHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
+++.++. .++.|+..|+||||||+||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 4444443 455688899999999999853
No 288
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=68.73 E-value=79 Score=29.46 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=38.3
Q ss_pred HHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhH
Q 001550 419 EHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNL 465 (1055)
Q Consensus 419 ~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l 465 (1055)
...|...+..|...++.++.++..+...-.+++..|.+|+..|...|
T Consensus 27 ~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 27 KDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566668888899999999999999999999999999988775544
No 289
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.51 E-value=3.7e+02 Score=35.10 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQI 376 (1055)
Q Consensus 326 ~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~ 376 (1055)
+.+.+.-.+.++..|+...+..++|+..||-|+..+.+..|.+..+.+-..
T Consensus 125 l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~ 175 (769)
T PF05911_consen 125 LSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSR 175 (769)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444556677778888888888888888888887777666555544443
No 290
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=68.35 E-value=3.8e+02 Score=35.18 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=5.8
Q ss_pred HHHHHHhHhcc
Q 001550 812 STLKFAERVSG 822 (1055)
Q Consensus 812 sTL~FA~Rak~ 822 (1055)
.-|=-|+|||.
T Consensus 881 aQLVaASrVKA 891 (980)
T KOG0980|consen 881 AQLVAASRVKA 891 (980)
T ss_pred HHHHHHHHhhc
Confidence 33445666654
No 291
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=68.28 E-value=2.6e+02 Score=33.31 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=14.8
Q ss_pred HhhhhHHHhhhhhHHHhhHHHHHHHHHHH
Q 001550 270 TATQYQNFKNQNNLFRAREEKYKSRIRVL 298 (1055)
Q Consensus 270 is~q~~~~~~q~~~~~~~~~~~~~~~~~l 298 (1055)
+..|.+.++.+..--..+...|+.+.+++
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~ 204 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIV 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34444444444444555556666654444
No 292
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.16 E-value=1.4e+02 Score=30.07 Aligned_cols=8 Identities=13% Similarity=-0.018 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 001550 391 ERLLTVSK 398 (1055)
Q Consensus 391 ~~~l~~~~ 398 (1055)
+..+...+
T Consensus 65 r~e~~~~~ 72 (132)
T PF07926_consen 65 REELQELQ 72 (132)
T ss_pred HHHHHHHH
Confidence 33333333
No 293
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=67.89 E-value=2.4 Score=49.61 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.2
Q ss_pred cceeEEeecccCCCcceeeec
Q 001550 571 YNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G 591 (1055)
-...|+..|+||||||+||..
T Consensus 133 ~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999999854
No 294
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=67.85 E-value=2.4e+02 Score=34.27 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred hHHHHHHhHHHHHHHHHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchh---hHHHHHHHHHHHHHHhhhHHHH
Q 001550 253 HRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTE---ENQVVANQLERIKTEKTNIAQK 329 (1055)
Q Consensus 253 ~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~e---e~~~~~~~l~~l~~e~~k~eek 329 (1055)
+++..+++|.-.-||.=|--.+.-+=..|.+-+..--. ..+|....+.-.| |.+.+.-+++.+|..--.++|+
T Consensus 358 qvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnL----qe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 358 QVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNL----QEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHH----------HHHHhhhcccchhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 330 EKLEEQ----------NALRLKKENDDRDIEISTLKQDLEL-----------AKRTHELHCLQLEEQIYETKIESQKKLQ 388 (1055)
Q Consensus 330 ~~~~e~----------~~~~~~~e~~~~~~e~~~Lk~ele~-----------~k~~~e~~~~~le~~~~~~k~~le~~l~ 388 (1055)
-+.+-+ +|++..-.++.....+..||.+|+. .|++.|...+.|+.+-.+.+.+..+..+
T Consensus 434 y~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERq 513 (527)
T PF15066_consen 434 YMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQ 513 (527)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 001550 389 ELERLLTVSKKKVE 402 (1055)
Q Consensus 389 e~~~~l~~~~~~~~ 402 (1055)
.|+..++++-.+|+
T Consensus 514 kLKs~leKLvaqvk 527 (527)
T PF15066_consen 514 KLKSRLEKLVAQVK 527 (527)
T ss_pred HHHHHHHHHHHhcC
No 295
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.21 E-value=2.5e+02 Score=32.62 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 381 IESQKKLQELERLLTVSKKKVEELE 405 (1055)
Q Consensus 381 ~~le~~l~e~~~~l~~~~~~~~~le 405 (1055)
..|.+|++.++.+-..++.+...|.
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777777777766666665554
No 296
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=66.87 E-value=1.8 Score=56.04 Aligned_cols=58 Identities=34% Similarity=0.405 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 348 DIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELE 405 (1055)
Q Consensus 348 ~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le 405 (1055)
...++.+..++..++..|+......-....+++..|..++.++...++.....+..|+
T Consensus 291 ~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~Le 348 (859)
T PF01576_consen 291 ERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLE 348 (859)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777665554444556667777777777666666555544443
No 297
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=66.82 E-value=64 Score=41.71 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred cccCcCCCCcchHHHHHHHHHhHhhhhcCCCCchHHHHHHhHHHHHHHHHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHh
Q 001550 220 NSSCMDNASTKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLE 299 (1055)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~p~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le 299 (1055)
+..+|.|--++.|+.+++.--++..|+|..++-..+ ++|+||+.|- ..+|..-+|..-|+
T Consensus 1030 r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~-~~l~kl~~ea----------q~~Q~k~LK~~~e~--------- 1089 (1189)
T KOG1265|consen 1030 RVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQI-SLLRKLLSEA----------QTNQTKALKESLEK--------- 1089 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----------HHHHHHHHHHHHHH---------
Q ss_pred hhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 300 TLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYET 379 (1055)
Q Consensus 300 ~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~ 379 (1055)
|-..+...++..+.|..+. ++..-...+..+..+|+...+ |....++...+.++.+++..+|+.+-.+.
T Consensus 1090 --------e~kElk~~l~kkr~e~ik~-~~~~kdK~e~er~~rE~n~s~--i~~~V~e~krL~~~~~k~~e~L~k~~~~~ 1158 (1189)
T KOG1265|consen 1090 --------ETKELKKKLDKKRMEDIKV-DKVIKDKAERERRKRELNSSN--IKEFVEERKRLAEKQSKRQEQLVKKHLEV 1158 (1189)
T ss_pred --------HHHHHHHHHHHHHHHhhhh-ccccccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001550 380 KIESQKKLQELERLLTVSKKK 400 (1055)
Q Consensus 380 k~~le~~l~e~~~~l~~~~~~ 400 (1055)
.+.|.+.-+.+..++..-...
T Consensus 1159 leql~e~~kal~~e~~~~~e~ 1179 (1189)
T KOG1265|consen 1159 LEQLAEEEKALDAEAEQEYEE 1179 (1189)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
No 298
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.79 E-value=2.7 Score=47.00 Aligned_cols=30 Identities=37% Similarity=0.504 Sum_probs=23.1
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..+..++..-.+.|+-.|+||||||+||..
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 345666665566788999999999999853
No 299
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=66.63 E-value=2.1 Score=47.36 Aligned_cols=29 Identities=38% Similarity=0.550 Sum_probs=19.8
Q ss_pred HHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..++..++.+ .+.|+..|.||||||.+|.
T Consensus 117 ~~~l~~~v~~-~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 117 AEFLRSAVRG-RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHCHHT-TEEEEEEESTTSSHHHHHH
T ss_pred HHHHhhcccc-ceEEEEECCCccccchHHH
Confidence 3444443333 4567778999999999984
No 300
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.43 E-value=1.7e+02 Score=30.81 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHHH
Q 001550 347 RDIEISTLKQDLELA 361 (1055)
Q Consensus 347 ~~~e~~~Lk~ele~~ 361 (1055)
...+++.+++.+..+
T Consensus 79 ~~~e~~~~~~~l~~l 93 (191)
T PF04156_consen 79 LQGELSELQQQLQQL 93 (191)
T ss_pred hhhhHHhHHHHHHHH
Confidence 334455555544433
No 301
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.30 E-value=3.3e+02 Score=33.82 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=9.3
Q ss_pred hhHHHhhhhhHHHhhHHHHHH
Q 001550 273 QYQNFKNQNNLFRAREEKYKS 293 (1055)
Q Consensus 273 q~~~~~~q~~~~~~~~~~~~~ 293 (1055)
.+|.+++.....+-..-+|++
T Consensus 58 eyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 58 EYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 302
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=66.04 E-value=3.6 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=18.2
Q ss_pred hhcCcceeEEeecccCCCcceeee
Q 001550 567 VLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 567 vLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
.+......++-+|++|+|||+++-
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHH
Confidence 344445578889999999998764
No 303
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.89 E-value=4.5e+02 Score=35.21 Aligned_cols=244 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HhHhhhhcCCCCchHHH----------------HHHhHHHHHHHHHHhhhhHHHhhhhhHHHhhHHHHH--HHHHHHhhh
Q 001550 240 LDECVERKNGDAPHRVA----------------CLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYK--SRIRVLETL 301 (1055)
Q Consensus 240 l~~~~~~~~~~~p~~~~----------------~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~--~~~~~le~l 301 (1055)
+.+-|.+.+.+||.+.+ .-+++-++.+++.|+-+-..+..+-.++++.++--+ .|+.-++--
T Consensus 232 ~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~ 311 (1141)
T KOG0018|consen 232 ANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKD 311 (1141)
T ss_pred hhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhh
Q ss_pred hccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 302 TVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKI 381 (1055)
Q Consensus 302 ~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ 381 (1055)
.-+..........+++++..+..-.+-++..-++++..-.+.............++.+.++..+...- ..+..-+..
T Consensus 312 i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln~ 388 (1141)
T KOG0018|consen 312 IETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLNR 388 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhh
Q 001550 382 ESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCL 461 (1055)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l 461 (1055)
....+...++..+.....--+.......+- .+.......+...+..=.+...++......+...+-.....-.+-...|
T Consensus 389 ~~r~~~~~ld~~~~~~~elE~r~k~l~~sv-er~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL 467 (1141)
T KOG0018|consen 389 NMRSDQDTLDHELERRAELEARIKQLKESV-ERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEEL 467 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhh
Q 001550 462 GLNLKRLIDAAEKYHVILAENRRLYN 487 (1055)
Q Consensus 462 ~~~l~~l~~~~~~y~~~l~erRkL~N 487 (1055)
..-+..+.++....|.-....|+.-+
T Consensus 468 ~~~~~ql~das~dr~e~sR~~~~~ea 493 (1141)
T KOG0018|consen 468 VEVLDQLLDASADRHEGSRRSRKQEA 493 (1141)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHH
No 304
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=65.52 E-value=2.8 Score=44.68 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.9
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..|+.++...+-.++..|..||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 45666776655556669999999999874
No 305
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=65.12 E-value=4.7e+02 Score=35.09 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=41.7
Q ss_pred HHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHH-HHHHH
Q 001550 292 KSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRD-IEISTLKQDLELAKRT-HELHC 369 (1055)
Q Consensus 292 ~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~-~e~~~Lk~ele~~k~~-~e~~~ 369 (1055)
..||.+||+...-.-..++...+-|+ .++|+.+++.++-.|+....+..+ ..|..|.++|+.+.-+ |....
T Consensus 1109 TKrIt~LEk~k~~~l~~ikK~ia~ln-------nlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl 1181 (1439)
T PF12252_consen 1109 TKRITDLEKAKLDNLDSIKKAIANLN-------NLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYL 1181 (1439)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHH-------HHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHH
Confidence 55666666655444444444443333 345556666666666666655543 3566778887776643 44444
Q ss_pred HHHHH
Q 001550 370 LQLEE 374 (1055)
Q Consensus 370 ~~le~ 374 (1055)
.+.-.
T Consensus 1182 ~eitK 1186 (1439)
T PF12252_consen 1182 VEITK 1186 (1439)
T ss_pred HHHHH
Confidence 44333
No 306
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.03 E-value=4.6e+02 Score=34.95 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=3.6
Q ss_pred hcCCCc
Q 001550 74 LSPDSV 79 (1055)
Q Consensus 74 l~Pgsv 79 (1055)
+.||+|
T Consensus 17 f~~GsI 22 (1072)
T KOG0979|consen 17 FPDGSI 22 (1072)
T ss_pred CCCCce
Confidence 356666
No 307
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.89 E-value=5.5e+02 Score=35.78 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=5.8
Q ss_pred HHHHHHHHHhh
Q 001550 262 VVPLIERRTAT 272 (1055)
Q Consensus 262 vv~e~e~ris~ 272 (1055)
-|.|++++|..
T Consensus 743 ri~el~~~Iae 753 (1353)
T TIGR02680 743 RIAELDARLAA 753 (1353)
T ss_pred HHHHHHHHHHH
Confidence 34556655443
No 308
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=64.84 E-value=6e+02 Score=36.25 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=61.8
Q ss_pred HhhhhHhhcccChhhHH-----HHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcccCCCC---CCC
Q 001550 17 AENIEALDNMAEGNQLS-----TLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGANF---EPG 88 (1055)
Q Consensus 17 ~~~~~~~~~~~~~~r~~-----e~~~WIe~vlg~~~lp~~~s~edf~~~LrDGviLC~L~N~l~Pgsv~k~~~~---~~~ 88 (1055)
+..|..++=+.....|. ---.|++..++.... -..||..-|+||+.|.+|+..|.--..||...- .+.
T Consensus 30 a~lFErsRIKaLadERe~vQKKTFTKWvNShL~rv~c----~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~ 105 (2473)
T KOG0517|consen 30 ARLFERSRIKALADEREAVQKKTFTKWVNSHLARVSC----RIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHC 105 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----hhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehh
Confidence 44555555555554444 445799999974444 345899999999999999999976666554321 344
Q ss_pred cccHHHHHHHHHhCCCC--CCccccc
Q 001550 89 PANVKRFLAAMDDMGLP--RFELSDL 112 (1055)
Q Consensus 89 ~eNI~~FL~a~~~~Glp--~Fe~~DL 112 (1055)
.||+..-|.+.++-.|+ ..-+-|+
T Consensus 106 LENvdKaLqFLkeqkVhLEniGshDI 131 (2473)
T KOG0517|consen 106 LENVDKALQFLKEQKVHLENIGSHDI 131 (2473)
T ss_pred HhhhHHHHHHHHhcccccccCCcccc
Confidence 79999999999764443 2444444
No 309
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.51 E-value=71 Score=34.86 Aligned_cols=9 Identities=33% Similarity=0.283 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001550 351 ISTLKQDLE 359 (1055)
Q Consensus 351 ~~~Lk~ele 359 (1055)
++.|+++|+
T Consensus 141 n~~L~~~l~ 149 (206)
T PRK10884 141 NQKLKNQLI 149 (206)
T ss_pred HHHHHHHHH
Confidence 333333333
No 310
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=63.45 E-value=2.4 Score=44.53 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=21.1
Q ss_pred HHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..+...+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 334443445668899999999999999774
No 311
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=63.40 E-value=2.2 Score=45.70 Aligned_cols=18 Identities=44% Similarity=0.543 Sum_probs=15.5
Q ss_pred eEEeecccCCCcceeeec
Q 001550 574 CIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1055)
.|+-.|+||+|||.|+.-
T Consensus 3 vi~lvGptGvGKTTt~aK 20 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAK 20 (196)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCchHhHHHH
Confidence 578899999999999753
No 312
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=63.26 E-value=2.9 Score=46.48 Aligned_cols=130 Identities=18% Similarity=0.290 Sum_probs=70.5
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCccee-EEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHHHHHhccC
Q 001550 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVC-IFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN 619 (1055)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~-IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~ 619 (1055)
..+|...+-+...+.+...+ ..++.|..+- ++-||..|+|||.++-. |+......
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVka------------------ll~~y~~~-- 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVKA------------------LLNEYADQ-- 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHHH------------------HHHHHhhc--
Confidence 45677776665555555555 4456666432 56699999999887643 22211111
Q ss_pred CceEEEEEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEe-cCHHHHHHHHHhhhhccccccCCCcCC
Q 001550 620 SILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSV-QSTADVLELMNIGLMNRAVCSTALNER 698 (1055)
Q Consensus 620 ~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vv-ss~eev~~lL~~g~~nR~~~sT~~N~~ 698 (1055)
.+-.+||..+.+.||-.--. .+...+..-.+++++++...- .....+..+|+-|...| .....+...
T Consensus 80 ------GLRlIev~k~~L~~l~~l~~-----~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyAT 147 (249)
T PF05673_consen 80 ------GLRLIEVSKEDLGDLPELLD-----LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYAT 147 (249)
T ss_pred ------CceEEEECHHHhccHHHHHH-----HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEe
Confidence 16688998888777642100 000011111223333332221 22355666776665544 445556777
Q ss_pred CCCcccEE
Q 001550 699 SSRSHSIL 706 (1055)
Q Consensus 699 SSRSH~If 706 (1055)
|.|-|.|=
T Consensus 148 SNRRHLv~ 155 (249)
T PF05673_consen 148 SNRRHLVP 155 (249)
T ss_pred cchhhccc
Confidence 88888764
No 313
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.23 E-value=3.4e+02 Score=32.80 Aligned_cols=9 Identities=44% Similarity=0.626 Sum_probs=4.1
Q ss_pred hhhhhhhcc
Q 001550 485 LYNEVQDLK 493 (1055)
Q Consensus 485 L~N~vqelK 493 (1055)
|+-++..||
T Consensus 408 leqevkrLr 416 (502)
T KOG0982|consen 408 LEQEVKRLR 416 (502)
T ss_pred HHHHHHHhc
Confidence 444444444
No 314
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=63.20 E-value=2 Score=43.81 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=13.0
Q ss_pred hcCcceeEEeecccCCCcceee
Q 001550 568 LDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 568 LdGyN~~IfAYGQTGSGKTyTM 589 (1055)
..|-..+|+-+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566778999999999999875
No 315
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=63.18 E-value=1.9e+02 Score=34.83 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhhhhhhhhccC
Q 001550 474 KYHVILAENRRLYNEVQDLKG 494 (1055)
Q Consensus 474 ~y~~~l~erRkL~N~vqelKG 494 (1055)
..+..+.||-.=+-||+-+-|
T Consensus 408 evtt~lrErl~RWqQIE~lcG 428 (575)
T KOG4403|consen 408 EVTTLLRERLHRWQQIESLCG 428 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334444444444555555555
No 316
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.12 E-value=2.9e+02 Score=32.05 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=4.0
Q ss_pred Hhhhhhhhh
Q 001550 481 ENRRLYNEV 489 (1055)
Q Consensus 481 erRkL~N~v 489 (1055)
++|.|--.|
T Consensus 193 eKr~Lq~~l 201 (310)
T PF09755_consen 193 EKRRLQEKL 201 (310)
T ss_pred HHHHHHHHH
Confidence 445444443
No 317
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.85 E-value=2.3e+02 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHhhhhcCCCCchHHHHHHhHHHHHHHHH
Q 001550 232 LFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERR 269 (1055)
Q Consensus 232 l~~~~~~~l~~~~~~~~~~~p~~~~~~l~kvv~e~e~r 269 (1055)
|..+|.+-+.+.+++- |=|. .+|+-.|.|.+.-
T Consensus 6 l~~~~~a~~~~~ld~~--EDP~---~~l~q~ird~e~~ 38 (221)
T PF04012_consen 6 LKTLVKANINELLDKA--EDPE---KMLEQAIRDMEEQ 38 (221)
T ss_pred HHHHHHHHHHHHHHhh--cCHH---HHHHHHHHHHHHH
Confidence 4567777777766643 2264 5666666666554
No 318
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=62.83 E-value=3.1e+02 Score=32.17 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001550 380 KIESQKKLQELERLLTVSKKKVE 402 (1055)
Q Consensus 380 k~~le~~l~e~~~~l~~~~~~~~ 402 (1055)
+++.|+.+.|++.+.+-++.+++
T Consensus 240 eaqvek~i~EfdiEre~LRAel~ 262 (561)
T KOG1103|consen 240 EAQVEKLIEEFDIEREFLRAELE 262 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666665555554443
No 319
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=62.82 E-value=3.4 Score=47.61 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=20.5
Q ss_pred HHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..++..++.+. ..|+-.|.||||||++|.
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34566666653 556667999999997764
No 320
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=62.74 E-value=4.4e+02 Score=33.94 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=14.7
Q ss_pred HhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 001550 422 YQSFMGCQLGVIQDLRVAFESTKHEVLETKK 452 (1055)
Q Consensus 422 ~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~ 452 (1055)
+...++.+.+..+++...++.++.++.+..+
T Consensus 550 ~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~ 580 (698)
T KOG0978|consen 550 LTQSLEMLKKKAQEAKQSLEDLQIELEKSEA 580 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555544444433
No 321
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=62.50 E-value=3.6e+02 Score=35.55 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=24.2
Q ss_pred hHHHHhchHHHHHHhhcCc------ceeEEeecccCCCcceeee
Q 001550 553 QEEVFLDTRPLIRSVLDGY------NVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 553 QeeVf~~~~pLV~svLdGy------N~~IfAYGQTGSGKTyTM~ 590 (1055)
|...-..+...|..+..|. .+.++-+|+||+|||++..
T Consensus 570 Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~ 613 (852)
T TIGR03346 570 QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAK 613 (852)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHH
Confidence 3444444444455555553 3567789999999998753
No 322
>PF13479 AAA_24: AAA domain
Probab=62.32 E-value=3.1 Score=44.79 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=16.9
Q ss_pred ceeEEeecccCCCcceeeec
Q 001550 572 NVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1055)
+..|+.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45788999999999998754
No 323
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=62.29 E-value=4e+02 Score=33.34 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhh
Q 001550 433 IQDLRVAFESTKHEVLETKKNY 454 (1055)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~ 454 (1055)
+..++.....+..++...+..|
T Consensus 315 l~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 315 LEHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444445555555554444
No 324
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=62.17 E-value=2.4e+02 Score=30.77 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 001550 289 EKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELH 368 (1055)
Q Consensus 289 ~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~ 368 (1055)
..|.+++..|+.--...+.+...+..+|+.|+ .+.+-++.-+.||.+|+.++..++..|...
T Consensus 43 s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~------------------~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~ 104 (206)
T PF14988_consen 43 SRYAKQTSELQDQLLQKEKEQAKLQQELQALK------------------EFRRLKEQQEREIQTLEEELEKMRAEHAEK 104 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666644444444444444443322 222223345678999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 369 CLQLEEQIYETKIESQKKLQELER 392 (1055)
Q Consensus 369 ~~~le~~~~~~k~~le~~l~e~~~ 392 (1055)
..+++.+.-..+..|++++.+...
T Consensus 105 l~~~~~qfl~EK~~LEke~~e~~i 128 (206)
T PF14988_consen 105 LQEAESQFLQEKARLEKEASELKI 128 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 888888888888888877765544
No 325
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=61.75 E-value=3.1e+02 Score=31.81 Aligned_cols=31 Identities=16% Similarity=0.437 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 001550 385 KKLQELERLLTVSKKKVEELESLSESKSQRW 415 (1055)
Q Consensus 385 ~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~ 415 (1055)
.-...++.+++.+.++++.|+.-...+...|
T Consensus 237 e~F~tfk~Emekm~Kk~kklEKE~~~~k~k~ 267 (309)
T PF09728_consen 237 EVFETFKKEMEKMSKKIKKLEKENQTWKSKW 267 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777766655554444
No 326
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=61.67 E-value=3.1 Score=39.78 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.1
Q ss_pred eEEeecccCCCcceee
Q 001550 574 CIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1055)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999864
No 327
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=61.52 E-value=3.7 Score=46.86 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=21.7
Q ss_pred HHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..++..++.+ ...|+-.|.||||||++|-
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 4556666654 4567899999999999874
No 328
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.49 E-value=3.2e+02 Score=33.08 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=10.6
Q ss_pred HHHHhhcCcceeEEeec
Q 001550 563 LIRSVLDGYNVCIFAYG 579 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYG 579 (1055)
-|..+-.|-.+.|...+
T Consensus 368 di~~v~~Gq~V~v~~~a 384 (457)
T TIGR01000 368 DISGIKVGQKVRFKLTQ 384 (457)
T ss_pred HHhhcCCCCeEEEEEec
Confidence 34555577777776554
No 329
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=61.13 E-value=4.4 Score=42.63 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.1
Q ss_pred eeEEeecccCCCcceeeec
Q 001550 573 VCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1055)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3488899999999999875
No 330
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.65 E-value=5.2 Score=45.01 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.9
Q ss_pred HHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
-++++.+.--.-+.|+..|.|||||++||-
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 466777776777889999999999999984
No 331
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=60.26 E-value=4.1e+02 Score=32.86 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=11.2
Q ss_pred HHHHHhHHHHHHHHHHhhh
Q 001550 255 VACLLRKVVPLIERRTATQ 273 (1055)
Q Consensus 255 ~~~~l~kvv~e~e~ris~q 273 (1055)
+.+-|.|.+--+|.+|-+|
T Consensus 194 l~~~lqk~f~alEk~mka~ 212 (531)
T PF15450_consen 194 LCSFLQKSFLALEKRMKAQ 212 (531)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555
No 332
>PRK00106 hypothetical protein; Provisional
Probab=59.65 E-value=4.4e+02 Score=32.96 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.4
Q ss_pred HHHHhc
Q 001550 554 EEVFLD 559 (1055)
Q Consensus 554 eeVf~~ 559 (1055)
++||..
T Consensus 300 Ee~v~k 305 (535)
T PRK00106 300 EELVEK 305 (535)
T ss_pred HHHHHH
Confidence 344433
No 333
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=59.62 E-value=3e+02 Score=33.24 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001550 350 EISTLKQDLELAKRTHELHC 369 (1055)
Q Consensus 350 e~~~Lk~ele~~k~~~e~~~ 369 (1055)
|+..|+.+|..+|+.|-...
T Consensus 156 el~~lrrdLavlRQ~~~~~~ 175 (426)
T smart00806 156 ELKSLQRELAVLRQTHNSFF 175 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444433
No 334
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.61 E-value=3.4e+02 Score=31.69 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=31.1
Q ss_pred hhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccch-----hHHHHHHHHHHHHHHHHHHH
Q 001550 301 LTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDR-----DIEISTLKQDLELAKRTHEL 367 (1055)
Q Consensus 301 l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~-----~~e~~~Lk~ele~~k~~~e~ 367 (1055)
+-..+.+++..+..+++.|+.....++..-++..+.+.+..-..... ..|-+.|-.+||.++.+++.
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~q 144 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQ 144 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555444444444333222111 13444555555554444433
No 335
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=59.04 E-value=66 Score=40.13 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=20.0
Q ss_pred CchhhhhhhhccCCCcccceeEecCCCCCC
Q 001550 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1055)
Q Consensus 777 dSKLTrLLqdSLGGnskTlmI~~ISP~~~~ 806 (1055)
++++|++|...|++=.+..+=+.++-...+
T Consensus 472 ~~~~~~~i~~~l~~i~~~~v~~~~~G~~~~ 501 (555)
T TIGR03545 472 SFEATKYILQVLKKIDVLTVDADIKGILED 501 (555)
T ss_pred ccHHHHHHHHHHhhCCeeEEEEeeccccCC
Confidence 477888888888876666665555543333
No 336
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=58.97 E-value=2.6e+02 Score=30.16 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=8.6
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 001550 344 NDDRDIEISTLKQDLELAK 362 (1055)
Q Consensus 344 ~~~~~~e~~~Lk~ele~~k 362 (1055)
++..+.||+.|+-..+.++
T Consensus 154 ke~~~~ei~~lks~~~~l~ 172 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEALK 172 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444333
No 337
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=58.88 E-value=4.1e+02 Score=32.36 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=14.8
Q ss_pred hhcccchhHHHHHHHHHHH
Q 001550 341 KKENDDRDIEISTLKQDLE 359 (1055)
Q Consensus 341 ~~e~~~~~~e~~~Lk~ele 359 (1055)
+.|+|..-.||..||.+|.
T Consensus 221 ~~EkE~Ll~EIq~Lk~qL~ 239 (488)
T PF06548_consen 221 MGEKEVLLEEIQDLKSQLQ 239 (488)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 6666777778888888887
No 338
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.38 E-value=3.6e+02 Score=33.55 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=15.7
Q ss_pred HHHHhhHHHHHhhhhhHHHHHHHHHHHH
Q 001550 449 ETKKNYSKEFDCLGLNLKRLIDAAEKYH 476 (1055)
Q Consensus 449 ~~~~~~~~e~~~l~~~l~~l~~~~~~y~ 476 (1055)
.....|..|+..++..++.|....|-..
T Consensus 655 ~AErdFk~Elq~~~~~~~~L~~~iET~~ 682 (741)
T KOG4460|consen 655 DAERDFKKELQLIPDQLRHLGNAIETVT 682 (741)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344566666666666666655544433
No 339
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.28 E-value=4.1e+02 Score=32.23 Aligned_cols=15 Identities=7% Similarity=0.335 Sum_probs=7.8
Q ss_pred chHHHHHHhHHHHHH
Q 001550 252 PHRVACLLRKVVPLI 266 (1055)
Q Consensus 252 p~~~~~~l~kvv~e~ 266 (1055)
|...+.+++.+++.|
T Consensus 133 P~~Aa~i~n~l~~~y 147 (498)
T TIGR03007 133 PELAKDVVQTLLTIF 147 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555544
No 340
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=58.23 E-value=11 Score=47.59 Aligned_cols=92 Identities=23% Similarity=0.269 Sum_probs=53.7
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchh----HHHHHHHHHHHHh
Q 001550 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVN----YRALNDLFEISES 616 (1055)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIi----pRal~~LF~~~~~ 616 (1055)
|....=|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||-.-... ...+-|+ -....+|+.....
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~-~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQ-VNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444457788888776654 555555664222 37899999999999752110 0111111 1234455555444
Q ss_pred ccCCceEEEEEEEEEEeccee
Q 001550 617 RKNSILYEVGVQMVEIYNEQV 637 (1055)
Q Consensus 617 ~~~~~~~~V~vS~lEIYnE~V 637 (1055)
--........|||+--|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 333444678899999986553
No 341
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.20 E-value=3e+02 Score=30.55 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHH
Q 001550 358 LELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLR 437 (1055)
Q Consensus 358 le~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~~~~~~~Q~~~l~el~ 437 (1055)
+.-+..-+.........+..+-+.-+++-+.|.+..|.+.+ ..+......+.+.-.+........-..|.++..-|.
T Consensus 4 ~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar---~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 4 FSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKAR---QALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 001550 438 VAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLK 493 (1055)
Q Consensus 438 ~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~vqelK 493 (1055)
..-+.+-.+.+.....|.+....+...+..+.+..+.....+ ..|...|.+++
T Consensus 81 ~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~---~~Le~Ki~e~~ 133 (225)
T COG1842 81 AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQL---AALEQKIAELR 133 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 342
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=58.06 E-value=6.4 Score=42.68 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=17.7
Q ss_pred HHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
+++.++ .+-.+++.|+.||||||.-..
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHHHH
Confidence 344444 566899999999999987543
No 343
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=58.01 E-value=6.7e+02 Score=34.54 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=12.3
Q ss_pred hhhccCCCcccceeEecCCC
Q 001550 784 LQSSLGGQAKTLMMVQLNPD 803 (1055)
Q Consensus 784 LqdSLGGnskTlmI~~ISP~ 803 (1055)
|-++||+||..+ +-.-|.
T Consensus 1200 LAEtf~snCgvL--ALDEPT 1217 (1294)
T KOG0962|consen 1200 LAETFGSNCGVL--ALDEPT 1217 (1294)
T ss_pred HHHHHhhccccc--cccCCc
Confidence 778999999844 444453
No 344
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=57.82 E-value=3.4 Score=39.58 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.7
Q ss_pred EEeecccCCCcceeee
Q 001550 575 IFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 575 IfAYGQTGSGKTyTM~ 590 (1055)
|+-||+.|+|||+...
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5789999999998763
No 345
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=57.56 E-value=4.6 Score=46.70 Aligned_cols=28 Identities=43% Similarity=0.559 Sum_probs=20.1
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
.++..++.+. ..|+-.|.||||||++|-
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4555555432 347889999999999984
No 346
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.49 E-value=1.7e+02 Score=37.65 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhh
Q 001550 431 GVIQDLRVAFESTKHEVLETKKNY 454 (1055)
Q Consensus 431 ~~l~el~~~~~~~k~ei~~~~~~~ 454 (1055)
..+.+|+..+.+....+..++..|
T Consensus 606 ~e~~~l~~~~~~~ekr~~RLkevf 629 (722)
T PF05557_consen 606 KEIAELKAELASAEKRNQRLKEVF 629 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444444443333
No 347
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=57.08 E-value=5 Score=46.62 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=23.6
Q ss_pred hHHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 560 TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 560 ~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
+..++..++.+. +.|+-.|-||||||+++-
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 345667777766 778999999999998863
No 348
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=57.03 E-value=2.1e+02 Score=30.47 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhh
Q 001550 471 AAEKYHVILAENRRLYNEVQD 491 (1055)
Q Consensus 471 ~~~~y~~~l~erRkL~N~vqe 491 (1055)
.-++|+..-..||+.||+|.|
T Consensus 160 ~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 160 EYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666778889999876
No 349
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.86 E-value=2.6e+02 Score=29.49 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhHHHHHH
Q 001550 433 IQDLRVAFESTKHEVLE 449 (1055)
Q Consensus 433 l~el~~~~~~~k~ei~~ 449 (1055)
+..|+..+++.|-++.+
T Consensus 140 i~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 140 IANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666543
No 350
>PRK00106 hypothetical protein; Provisional
Probab=56.75 E-value=4.9e+02 Score=32.58 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=7.6
Q ss_pred hhhhhhhhhhccC
Q 001550 482 NRRLYNEVQDLKG 494 (1055)
Q Consensus 482 rRkL~N~vqelKG 494 (1055)
|+-+-..+|..-+
T Consensus 206 ~~ii~~aiqr~a~ 218 (535)
T PRK00106 206 KDLLAQAMQRLAG 218 (535)
T ss_pred HHHHHHHHHHhcc
Confidence 4456666666554
No 351
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.71 E-value=1.1e+02 Score=35.53 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 001550 308 ENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQD 357 (1055)
Q Consensus 308 e~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~e 357 (1055)
+...+..+++.++.|.....++.+..|++...+.++......|...|+++
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554544444444444555555555555555555555444
No 352
>PRK11281 hypothetical protein; Provisional
Probab=56.69 E-value=6.8e+02 Score=34.20 Aligned_cols=196 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhccchhhHHHHHHHHHH-HH--HHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH----
Q 001550 288 EEKYKSRIRVLETLTVGTTEENQVVANQLER-IK--TEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLEL---- 360 (1055)
Q Consensus 288 ~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~-l~--~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~---- 360 (1055)
++..++++..+.. ....+.+...+...+++ +. .+..+-+++.....+.+....++......++..+|++...
T Consensus 38 ~~~iq~~l~~~~~-~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~ 116 (1113)
T PRK11281 38 EADVQAQLDALNK-QKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRE 116 (1113)
T ss_pred HHHHHHHHHHhhc-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccc
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH--------------hhH
Q 001550 361 -AKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSY--------------QSF 425 (1055)
Q Consensus 361 -~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~--------------~~~ 425 (1055)
....-..+..+.-.+..+.-++.++.+.++...+.....+.+..++.-..-.++.++...++ +..
T Consensus 117 ~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~ 196 (1113)
T PRK11281 117 TLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVL 196 (1113)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 001550 426 MGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRR 484 (1055)
Q Consensus 426 ~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRk 484 (1055)
++.+...++.-.....+.-......+..++.+.+.+..++..+....+..+..+.++|.
T Consensus 197 l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 197 LQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 353
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.61 E-value=7.3 Score=46.16 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.1
Q ss_pred ceeEEeecccCCCcceeeec
Q 001550 572 NVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1055)
...|+.+|+||+|||+|+.-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999999853
No 354
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=56.56 E-value=6.1 Score=39.67 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=19.3
Q ss_pred HHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
++..++++. ..++..|+||||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344455542 3456788999999998865
No 355
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=56.56 E-value=2.2e+02 Score=36.62 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=12.4
Q ss_pred ceeEEeecccCCCcceeeec
Q 001550 572 NVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1055)
.+..++-...|.|||++-..
T Consensus 532 kvI~vtS~~~g~GKTtva~n 551 (726)
T PRK09841 532 NILMITGATPDSGKTFVSST 551 (726)
T ss_pred eEEEEecCCCCCCHHHHHHH
Confidence 33334444559999988654
No 356
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=56.40 E-value=3.2e+02 Score=30.32 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=14.2
Q ss_pred hHHHHHHhHHHHHHHHHHhhhhHHHhh
Q 001550 253 HRVACLLRKVVPLIERRTATQYQNFKN 279 (1055)
Q Consensus 253 ~~~~~~l~kvv~e~e~ris~q~~~~~~ 279 (1055)
-.+...+..|..|.|.. +.++..+..
T Consensus 58 Gtl~~aw~~~~~e~e~~-a~~H~~la~ 83 (239)
T cd07658 58 GTLSSAWTCVAEEMESE-ADIHRNLGS 83 (239)
T ss_pred CcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45556666666666544 555544443
No 357
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=56.23 E-value=4.5e+02 Score=32.00 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=22.3
Q ss_pred HHHHHHHhhhhHHHhhhhhHHHhhHHHHH
Q 001550 264 PLIERRTATQYQNFKNQNNLFRAREEKYK 292 (1055)
Q Consensus 264 ~e~e~ris~q~~~~~~q~~~~~~~~~~~~ 292 (1055)
++.+.-++.|-+...+.++.|++|.-+..
T Consensus 216 ~la~~~~~~~~e~~i~~~~~f~~r~~~~E 244 (554)
T KOG4677|consen 216 QLAEEAVSMHDENVITAVLIFLKRTLSKE 244 (554)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 66677788888888888888888776643
No 358
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=55.90 E-value=6.5 Score=44.14 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=25.0
Q ss_pred CChHHHHhchHHHHHHhhcC--cceeEEeecccCCCcceeee
Q 001550 551 ASQEEVFLDTRPLIRSVLDG--YNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 551 atQeeVf~~~~pLV~svLdG--yN~~IfAYGQTGSGKTyTM~ 590 (1055)
..|+++......++.....+ ....++-||++|+|||+...
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34666665555555544322 22236779999999998764
No 359
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=55.88 E-value=5.8 Score=41.67 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=20.8
Q ss_pred hHHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 560 TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 560 ~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..+++..++.. ...|.-.|+||||||.+|-
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34556655543 3456778999999999874
No 360
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.78 E-value=7.8 Score=43.75 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=14.9
Q ss_pred eEEeecccCCCcceeeec
Q 001550 574 CIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1055)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 555669999999999865
No 361
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.54 E-value=6.3e+02 Score=33.48 Aligned_cols=13 Identities=8% Similarity=0.394 Sum_probs=6.2
Q ss_pred hhhhhhhhccCCE
Q 001550 484 RLYNEVQDLKGNI 496 (1055)
Q Consensus 484 kL~N~vqelKGnI 496 (1055)
+.|+.+..+.+.+
T Consensus 740 ~~~~~~~~l~~~~ 752 (908)
T COG0419 740 KALELLEELREKL 752 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554433
No 362
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=55.49 E-value=1.9e+02 Score=31.99 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc------------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 306 TEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDD------------RDIEISTLKQDLELAKRTHELHCLQLE 373 (1055)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~------------~~~e~~~Lk~ele~~k~~~e~~~~~le 373 (1055)
++|++.|.++-+=+-...+.++++...-+++..++....+. .+.=+..|+.+|+.+ .-+.....+.
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V--~tde~k~~~~ 119 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDV--DTDELKNIAQ 119 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 374 EQIYETKIESQKKLQELERLLTVSKKKVEEL 404 (1055)
Q Consensus 374 ~~~~~~k~~le~~l~e~~~~l~~~~~~~~~l 404 (1055)
++..+.+.+++.-++|.+...++.++..+.+
T Consensus 120 ~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 120 NEIKKVREENKSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 363
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=55.45 E-value=2.4e+02 Score=28.70 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=11.3
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHH
Q 001550 337 ALRLKKENDDRDIEISTLKQDLELAK 362 (1055)
Q Consensus 337 ~~~~~~e~~~~~~e~~~Lk~ele~~k 362 (1055)
+.++..+.+.....+..|+.+++.++
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~e 86 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELE 86 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433
No 364
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=55.38 E-value=3.9 Score=52.08 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhccc
Q 001550 839 ELMEQVGSLKDIITKKDEEIERLQV-LKANISGVRHRVRSL 878 (1055)
Q Consensus 839 eL~~qv~~Lk~~i~~~~eei~~Lq~-l~~~~~~~r~~~~~~ 878 (1055)
....++..|+..+...+..+.||+. ....+...|.-+.++
T Consensus 603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l 643 (722)
T PF05557_consen 603 SQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL 643 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777677653 344455666666664
No 365
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=55.16 E-value=5 Score=42.07 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=18.3
Q ss_pred HHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.|..++.--. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 4555554333 456699999999998865
No 366
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=55.07 E-value=8.9 Score=49.32 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=31.9
Q ss_pred hhhhhhh------ccCCCcccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcch
Q 001550 780 LTQVLQS------SLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGSD 836 (1055)
Q Consensus 780 LTrLLqd------SLGGnskTlmI~~ISP~~~~~~ETLsTL~FA~Rak~I~~~~~k~~~~~~~ 836 (1055)
.+++||- -+|+.+|..+|+. +.++.+.++-.+.++..-++......+.+.+
T Consensus 335 V~r~lQRiGRsgHr~~~~Skg~ii~~------~r~dllE~~vi~~~a~~g~le~~~i~~~~LD 391 (814)
T COG1201 335 VNRFLQRIGRAGHRLGEVSKGIIIAE------DRDDLLECLVLADLALEGKLERIKIPKNPLD 391 (814)
T ss_pred HHHHhHhccccccccCCcccEEEEec------CHHHHHHHHHHHHHHHhCCcccCCCCCcchh
Confidence 3666764 3667777777653 3577778888888877766654443333333
No 367
>PRK09183 transposase/IS protein; Provisional
Probab=54.91 E-value=5.9 Score=44.19 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=16.8
Q ss_pred cCcceeEEeecccCCCcceeeec
Q 001550 569 DGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 569 dGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.|.| |+-||++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 5665 45699999999998865
No 368
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.90 E-value=2.1e+02 Score=34.30 Aligned_cols=21 Identities=10% Similarity=0.411 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001550 385 KKLQELERLLTVSKKKVEELE 405 (1055)
Q Consensus 385 ~~l~e~~~~l~~~~~~~~~le 405 (1055)
++.+|+.+.++...++|..||
T Consensus 298 eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444
No 369
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.67 E-value=1.6e+02 Score=30.67 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 001550 467 RLIDAAEKYHVILAENRRLYN 487 (1055)
Q Consensus 467 ~l~~~~~~y~~~l~erRkL~N 487 (1055)
.+...-..|+.....||+++|
T Consensus 149 ~~~~~~~~~~k~w~kRKri~k 169 (169)
T PF07106_consen 149 KLEKEYKKWRKEWKKRKRICK 169 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344445556666667888775
No 370
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=54.66 E-value=5.9 Score=50.16 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=27.9
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||.-+......++ .|-|-||+..|.+|||||+|+
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 447776654444443 689999999999999999985
No 371
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=54.02 E-value=1.3e+02 Score=30.26 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=35.8
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 336 NALRLKKENDDRDIEISTLKQDLELAKRTHEL----------------------HCLQLEEQIYETKIESQKKLQELERL 393 (1055)
Q Consensus 336 ~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~----------------------~~~~le~~~~~~k~~le~~l~e~~~~ 393 (1055)
.+.++...+.+...+|...|++++.+...-.+ ....++.+.++.+..+++.+..++..
T Consensus 24 ~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 24 EFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566666666666666655433221 12233344445555555555555555
Q ss_pred HHHHHHHHHHHH
Q 001550 394 LTVSKKKVEELE 405 (1055)
Q Consensus 394 l~~~~~~~~~le 405 (1055)
++....++.+|.
T Consensus 104 ~e~I~~~m~~LK 115 (131)
T KOG1760|consen 104 LESISARMDELK 115 (131)
T ss_pred HHHHHHHHHHHH
Confidence 555554444443
No 372
>PRK11519 tyrosine kinase; Provisional
Probab=54.00 E-value=1.7e+02 Score=37.68 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=13.8
Q ss_pred cceeEEeecccCCCcceeeec
Q 001550 571 YNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G 591 (1055)
.++.+++-...|.|||++-..
T Consensus 526 ~kvi~vts~~~geGKTt~a~n 546 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCAN 546 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHH
Confidence 344555555779999988653
No 373
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=53.74 E-value=7.8 Score=43.58 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=31.1
Q ss_pred ceeEEeecccCCCcceeeecCCCC-------------CCCccchhHHHHHHHHHHHHhcc
Q 001550 572 NVCIFAYGQTGSGKTYTMSGPCIS-------------STEDWGVNYRALNDLFEISESRK 618 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G~~~~-------------~~~~~GIipRal~~LF~~~~~~~ 618 (1055)
--.|+-||++|+|||++--.-.+. -.+.-|=-.|-+++||+......
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a 210 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA 210 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 445788999999999864321100 02345667788999998776543
No 374
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=53.52 E-value=5.4e+02 Score=32.10 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=9.2
Q ss_pred hhhhhhhhhccCCEEE
Q 001550 483 RRLYNEVQDLKGNIRV 498 (1055)
Q Consensus 483 RkL~N~vqelKGnIRV 498 (1055)
++.++.+..+-|.+++
T Consensus 358 ~qI~dkl~s~~~~~~~ 373 (591)
T KOG2412|consen 358 RQIFDKLDSLFGGIPD 373 (591)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5566666666555544
No 375
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=53.09 E-value=87 Score=35.40 Aligned_cols=81 Identities=22% Similarity=0.374 Sum_probs=48.2
Q ss_pred eeeceeeCCCCChHHHHhch-HHHHHHhh---cCcc--eeEEeecccCCCcceeeecCCCCC-------------CCccc
Q 001550 541 FKFNKVFGPEASQEEVFLDT-RPLIRSVL---DGYN--VCIFAYGQTGSGKTYTMSGPCISS-------------TEDWG 601 (1055)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~-~pLV~svL---dGyN--~~IfAYGQTGSGKTyTM~G~~~~~-------------~~~~G 601 (1055)
.++.-|=+-+..-++|-+.+ -||.+.=| =|.+ --|+.||+.|+|||-..-.-...+ ..-.|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 34445555555556666655 46665533 2443 348999999999984332110000 11246
Q ss_pred hhHHHHHHHHHHHHhccCCc
Q 001550 602 VNYRALNDLFEISESRKNSI 621 (1055)
Q Consensus 602 IipRal~~LF~~~~~~~~~~ 621 (1055)
--||.++++|....+....+
T Consensus 232 egprmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAPSI 251 (408)
T ss_pred cCcHHHHHHHHHHhccCCcE
Confidence 77999999999887665443
No 376
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=52.92 E-value=7.7e+02 Score=33.69 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=12.8
Q ss_pred CchHHHHHHhHHHHHHHHHHhh
Q 001550 251 APHRVACLLRKVVPLIERRTAT 272 (1055)
Q Consensus 251 ~p~~~~~~l~kvv~e~e~ris~ 272 (1055)
.|... .-.+.-.+|+++++..
T Consensus 142 ~pq~~-~~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 142 LPQQQ-TEARRQLNEIERRLQT 162 (1109)
T ss_pred chhhH-HHHHHHHHHHHHHHhC
Confidence 34444 5667777777776544
No 377
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=52.56 E-value=5.5 Score=40.13 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=12.5
Q ss_pred eEEeecccCCCcceee
Q 001550 574 CIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1055)
.+--.|+||+||||+-
T Consensus 55 VlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS 70 (127)
T ss_pred EEEeecCCCCcHHHHH
Confidence 3446799999999973
No 378
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.30 E-value=2.6e+02 Score=36.50 Aligned_cols=20 Identities=5% Similarity=-0.137 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 001550 117 MAPVLQCLRSLRASFSFCDE 136 (1055)
Q Consensus 117 ~~~Vv~cL~aL~~~~~~k~~ 136 (1055)
.-.-++|+.|+..|+.+.++
T Consensus 271 ~l~~lD~l~a~a~~a~~~~~ 290 (782)
T PRK00409 271 IFDELDFIFARARYAKALKA 290 (782)
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 34557899999999887654
No 379
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.24 E-value=6.2e+02 Score=32.46 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=12.1
Q ss_pred CCCcchHHHHHHHHHhH
Q 001550 226 NASTKSLFNIVNRILDE 242 (1055)
Q Consensus 226 ~~~~~~l~~~~~~~l~~ 242 (1055)
|...+|+.+.+..-|.-
T Consensus 57 n~~~~s~~~~~~~~l~~ 73 (716)
T KOG4593|consen 57 NITSKSLLMQLEDELMQ 73 (716)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 56777888887776554
No 380
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.15 E-value=8.1 Score=40.38 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=19.0
Q ss_pred HHHHhhcCcceeEEeecccCCCcceee
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1055)
.++.++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4455566877 577899999999873
No 381
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.08 E-value=3.6e+02 Score=32.02 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=62.7
Q ss_pred HhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 001550 285 RAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRT 364 (1055)
Q Consensus 285 ~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~ 364 (1055)
++-..++++++-....+..+.......+..+|+.|-.+.++.-||...-|+.+. ...+..-.+-.+++.+|..+++.
T Consensus 212 ~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 212 RADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666677777777777776666666555555322 22233333344444445444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001550 365 HELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1055)
Q Consensus 365 ~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~ 407 (1055)
|... .....++...|.++-.+|+..+.++++..+-
T Consensus 289 y~~~--------s~~V~~~t~~L~~IseeLe~vK~emeerg~~ 323 (359)
T PF10498_consen 289 YKQA--------SEGVSERTRELAEISEELEQVKQEMEERGSS 323 (359)
T ss_pred HHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4432 2223344555666666777777766665443
No 382
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=52.06 E-value=4.1e+02 Score=30.30 Aligned_cols=44 Identities=9% Similarity=0.210 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhhhhccch-hhHHHHHHHHHHHHHHhhhHHHHH
Q 001550 287 REEKYKSRIRVLETLTVGTT-EENQVVANQLERIKTEKTNIAQKE 330 (1055)
Q Consensus 287 ~~~~~~~~~~~le~l~~~~~-ee~~~~~~~l~~l~~e~~k~eek~ 330 (1055)
--++|++|+..+.+=+..+. ..+..+..+++.|.+|...|+.+.
T Consensus 31 ~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~ 75 (268)
T PF11802_consen 31 DMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRT 75 (268)
T ss_pred HHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 33456666655522222222 234466677777888888888754
No 383
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.91 E-value=3e+02 Score=33.83 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhhHHHhh
Q 001550 263 VPLIERRTATQYQNFKN 279 (1055)
Q Consensus 263 v~e~e~ris~q~~~~~~ 279 (1055)
.+++-+|+-.|-++.+.
T Consensus 336 F~dL~~R~K~Q~q~~~~ 352 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQ 352 (508)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36677777777776655
No 384
>PTZ00424 helicase 45; Provisional
Probab=51.84 E-value=7.4 Score=45.34 Aligned_cols=27 Identities=41% Similarity=0.666 Sum_probs=21.3
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..+..+++|.|+. ..++||||||.+..
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~~ 83 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHHH
Confidence 4567788999864 67899999998654
No 385
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.78 E-value=7.6 Score=46.09 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=25.3
Q ss_pred ChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 552 SQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 552 tQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
.|+.+.....++...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 355555543444444445555567779999999998764
No 386
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=51.71 E-value=1.8e+02 Score=27.09 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHHHHHHhhhhHHHhhhhhHHHhhHHHHHH
Q 001550 255 VACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKS 293 (1055)
Q Consensus 255 ~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~ 293 (1055)
+..||.-|-.||+.= ..+.+.+|...+.|..
T Consensus 2 l~elLd~ir~Ef~~~--------~~e~~~~k~~~~e~e~ 32 (79)
T PF08581_consen 2 LNELLDAIRQEFENL--------SQEANSYKHQKDEYEH 32 (79)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHH
Confidence 556777777788542 2233455555666653
No 387
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=51.67 E-value=5.2 Score=44.24 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.4
Q ss_pred cceeEEeecccCCCcceeeec
Q 001550 571 YNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G 591 (1055)
.+..++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 667788889999999999865
No 388
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=51.41 E-value=1.6e+02 Score=27.05 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=43.2
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001550 341 KKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1055)
Q Consensus 341 ~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~ 407 (1055)
+.+.+.....|..++..+..++..|.......... .+.+.+++.-..+........+.+|+.+++.
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777888888888877766554422 3456666666666777777777777776654
No 389
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=51.03 E-value=8 Score=45.22 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=26.6
Q ss_pred CCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceee
Q 001550 550 EASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 550 ~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1055)
+..|..+|..+-..+.. .+| ..+|.-|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~-~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN-EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc-cCC--cEEEEEcCCCCChhHHH
Confidence 35688999886433333 344 56688999999999986
No 390
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=50.95 E-value=4.4 Score=42.87 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=13.9
Q ss_pred eEEeecccCCCcceeeec
Q 001550 574 CIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1055)
.++.+|+||||||+++..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 678999999999999864
No 391
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=50.89 E-value=5.3e+02 Score=31.25 Aligned_cols=6 Identities=33% Similarity=0.661 Sum_probs=2.7
Q ss_pred CCchHH
Q 001550 250 DAPHRV 255 (1055)
Q Consensus 250 ~~p~~~ 255 (1055)
++|..|
T Consensus 149 eLPqyv 154 (575)
T KOG4403|consen 149 ELPQYV 154 (575)
T ss_pred ccHHHH
Confidence 345443
No 392
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=50.74 E-value=8.1 Score=46.27 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=20.0
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceee
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1055)
..+..+++|.| +++.++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 34566778988 577889999999763
No 393
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=50.66 E-value=4.3 Score=38.88 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.9
Q ss_pred EEeecccCCCcceeee
Q 001550 575 IFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 575 IfAYGQTGSGKTyTM~ 590 (1055)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999998764
No 394
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=50.43 E-value=7.8 Score=47.61 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=25.0
Q ss_pred chHHHHHHhhcCcc--eeEEeecccCCCcceeee
Q 001550 559 DTRPLIRSVLDGYN--VCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 559 ~~~pLV~svLdGyN--~~IfAYGQTGSGKTyTM~ 590 (1055)
+++..++..+.|.. ..++.+|++|||||.|+-
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 45777887776654 467889999999999973
No 395
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=50.35 E-value=2.1e+02 Score=33.06 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 001550 348 DIEISTLKQDLELAKR 363 (1055)
Q Consensus 348 ~~e~~~Lk~ele~~k~ 363 (1055)
..++-.||..|+.+.+
T Consensus 111 ~yqvd~Lkd~lee~eE 126 (302)
T PF09738_consen 111 MYQVDLLKDKLEELEE 126 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 396
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=50.35 E-value=5.9 Score=38.89 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.7
Q ss_pred eEEeecccCCCcceee
Q 001550 574 CIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1055)
.|+.+|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3789999999999864
No 397
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.13 E-value=4e+02 Score=29.59 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=7.9
Q ss_pred hhhhhhccCCEEEE
Q 001550 486 YNEVQDLKGNIRVY 499 (1055)
Q Consensus 486 ~N~vqelKGnIRV~ 499 (1055)
|..-.+.-+.|-||
T Consensus 158 ~~~E~~yg~~i~~~ 171 (251)
T PF11932_consen 158 YQIEMEYGRTIEVY 171 (251)
T ss_pred HHHHHHhCCceeEE
Confidence 33344556677776
No 398
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.10 E-value=2.1e+02 Score=30.77 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Q 001550 378 ETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKE 457 (1055)
Q Consensus 378 ~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e 457 (1055)
+....++.++..+...++.++.++.+++...+........-+.+.. ....+++|+.....++.++......--+.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-----~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-----LLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q ss_pred HHhhhhhHHHHHHHHHHH
Q 001550 458 FDCLGLNLKRLIDAAEKY 475 (1055)
Q Consensus 458 ~~~l~~~l~~l~~~~~~y 475 (1055)
+..+...+..+.+++..+
T Consensus 137 i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
No 399
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=50.08 E-value=7.5 Score=45.09 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=20.5
Q ss_pred HHHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..++..++.+. ..|+..|.||||||++|-
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 45555555432 346779999999999884
No 400
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=49.98 E-value=7.2e+02 Score=32.50 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHHHHHHHhcC-CCCCC--CCccHHHHHHHchhhHHHHHHHhhhcCCCc
Q 001550 34 TLVEWLNEMIP-HIHLP--FEASEEKLRACLVDGTVLCLVLNKLSPDSV 79 (1055)
Q Consensus 34 e~~~WIe~vlg-~~~lp--~~~s~edf~~~LrDGviLC~L~N~l~Pgsv 79 (1055)
+..+|-.+... ...|. .+.+.+.|...+|-- ++..+.||-.
T Consensus 509 e~eEWaga~skd~aqf~eaEekkREqfGk~fkKh-----FLha~ff~gf 552 (1424)
T KOG4572|consen 509 ELEEWAGAHSKDCAQFSEAEEKKREQFGKKFKKH-----FLHALFFGGF 552 (1424)
T ss_pred HHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHH-----HHHHhhhccc
Confidence 66677665543 12222 234455666666543 4444556554
No 401
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.92 E-value=3.4e+02 Score=34.89 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=17.3
Q ss_pred HHHHHhHHHHHHHHHHhhhhH
Q 001550 255 VACLLRKVVPLIERRTATQYQ 275 (1055)
Q Consensus 255 ~~~~l~kvv~e~e~ris~q~~ 275 (1055)
....|..+++|.++|+..+..
T Consensus 491 ~~~~l~~llee~~~~~~~~~~ 511 (809)
T KOG0247|consen 491 DKETLDQLLEELEKRILLRTK 511 (809)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999887766
No 402
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=49.84 E-value=5.4 Score=46.47 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=21.1
Q ss_pred HHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
..++..++.+ ...|+..|+||||||++|-.
T Consensus 152 ~~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 152 EAFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 4556555532 33477899999999999854
No 403
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=49.83 E-value=2.9e+02 Score=32.79 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhh
Q 001550 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLG 462 (1055)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~ 462 (1055)
++.|...++.+++++++++.+|..-+..|.
T Consensus 179 ~kKlqdrveK~k~evqktkekYektl~el~ 208 (472)
T KOG2856|consen 179 LKKLQDRVEKCKQEVQKTKEKYEKTLAELN 208 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777788899999999999988887776
No 404
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=49.80 E-value=6e+02 Score=31.55 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 001550 325 NIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQ-----------IYETKIESQKKLQELERL 393 (1055)
Q Consensus 325 k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~-----------~~~~k~~le~~l~e~~~~ 393 (1055)
.++|+....++.+..+++..-+.+.-+..|...+..-.++......+..++ ......+.+..++++...
T Consensus 341 ~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eK 420 (531)
T PF15450_consen 341 LLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEK 420 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666665555555555544444333333333333332 223333444444444444
Q ss_pred HHHHHHHHHHH
Q 001550 394 LTVSKKKVEEL 404 (1055)
Q Consensus 394 l~~~~~~~~~l 404 (1055)
+..+..+|+++
T Consensus 421 Vd~LpqqI~~v 431 (531)
T PF15450_consen 421 VDSLPQQIEEV 431 (531)
T ss_pred HHhhhHHHHHH
Confidence 44444444443
No 405
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.55 E-value=7e+02 Score=32.23 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhc
Q 001550 470 DAAEKYHVILAENRRLYNEVQDL 492 (1055)
Q Consensus 470 ~~~~~y~~~l~erRkL~N~vqel 492 (1055)
.+...-.+++..+-..++..|++
T Consensus 302 ~~rdep~kv~~l~~q~w~r~qq~ 324 (916)
T KOG0249|consen 302 ALRDEPEKVQTLNEQEWARDQQA 324 (916)
T ss_pred HhhhchHHHHHHHHHHHHHHHHH
Confidence 33333334444445555555553
No 406
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=49.48 E-value=11 Score=43.27 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=24.8
Q ss_pred CCCChHHHHhc-hHH-HHHHhhcCcceeEEeecccCCCcceeee
Q 001550 549 PEASQEEVFLD-TRP-LIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 549 ~~atQeeVf~~-~~p-LV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
|-+.-+-++++ +.. |-..+..+.---.+-||+.|+|||.|..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 33333444443 333 3344444344456789999999999974
No 407
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=48.68 E-value=3.9e+02 Score=29.06 Aligned_cols=8 Identities=25% Similarity=0.111 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 001550 308 ENQVVANQ 315 (1055)
Q Consensus 308 e~~~~~~~ 315 (1055)
++..+..+
T Consensus 44 e~~~L~~q 51 (193)
T PF14662_consen 44 EITDLRKQ 51 (193)
T ss_pred HHHHHHHH
Confidence 33333333
No 408
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=48.66 E-value=16 Score=40.43 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=28.6
Q ss_pred eCCCCChHHHHhchHHHHHHhhc-C-cceeEEeecccCCCccee
Q 001550 547 FGPEASQEEVFLDTRPLIRSVLD-G-YNVCIFAYGQTGSGKTYT 588 (1055)
Q Consensus 547 F~~~atQeeVf~~~~pLV~svLd-G-yN~~IfAYGQTGSGKTyT 588 (1055)
|+.-..|+.+-...+.+++.+.. | .=..++-||+.|.|||+.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 34456688998888888888764 2 234578899999999754
No 409
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=48.50 E-value=6.6 Score=37.43 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=13.1
Q ss_pred EEeecccCCCcceee
Q 001550 575 IFAYGQTGSGKTYTM 589 (1055)
Q Consensus 575 IfAYGQTGSGKTyTM 589 (1055)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678999999999875
No 410
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.46 E-value=5.7 Score=47.93 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=41.1
Q ss_pred HHHhhcCcceeEEeecccCCCcceeeecCCC----------CCCCccchhHH---------HHHHHHHHHHhccCCceEE
Q 001550 564 IRSVLDGYNVCIFAYGQTGSGKTYTMSGPCI----------SSTEDWGVNYR---------ALNDLFEISESRKNSILYE 624 (1055)
Q Consensus 564 V~svLdGyN~~IfAYGQTGSGKTyTM~G~~~----------~~~~~~GIipR---------al~~LF~~~~~~~~~~~~~ 624 (1055)
|..+.+|.+. +|++|||||||+...+|-. ......|..|+ .+.+||.... ...|.
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~----k~~~~ 178 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR----KFSYL 178 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH----hhccc
Confidence 4555667665 8999999999999987510 00011112222 3556776544 34566
Q ss_pred EEEEEEEEecc
Q 001550 625 VGVQMVEIYNE 635 (1055)
Q Consensus 625 V~vS~lEIYnE 635 (1055)
-.+-.+.+|+.
T Consensus 179 s~~~~~~~ygg 189 (482)
T KOG0335|consen 179 SGMKSVVVYGG 189 (482)
T ss_pred ccceeeeeeCC
Confidence 77778888976
No 411
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.25 E-value=7.4e+02 Score=31.88 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=11.8
Q ss_pred HHHHHHHchhhHHHHH
Q 001550 54 EEKLRACLVDGTVLCL 69 (1055)
Q Consensus 54 ~edf~~~LrDGviLC~ 69 (1055)
+.+|.-..+|-|.-|.
T Consensus 504 eq~~~~~~~d~i~a~~ 519 (1187)
T KOG0579|consen 504 EQLFEHSIRDTIMASS 519 (1187)
T ss_pred hHHhhhhhhhhhhccc
Confidence 3467788888888774
No 412
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=47.09 E-value=4.6e+02 Score=29.39 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 351 ISTLKQDLELAKRTHELHCLQLEE 374 (1055)
Q Consensus 351 ~~~Lk~ele~~k~~~e~~~~~le~ 374 (1055)
...+-.+++.+|+.|+..|.+.+.
T Consensus 128 ~~~~~~~l~kaKk~Y~~~cke~e~ 151 (258)
T cd07655 128 WAKLLKKVEKAKKAYHAACKAEKS 151 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446677788888888887654
No 413
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=47.05 E-value=7.6e+02 Score=31.92 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=16.9
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 001550 334 EQNALRLKKENDDRDIEISTLKQDLELAK 362 (1055)
Q Consensus 334 e~~~~~~~~e~~~~~~e~~~Lk~ele~~k 362 (1055)
++.-..||.+....+.+...|++++..+.
T Consensus 481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~ 509 (698)
T KOG0978|consen 481 DDKNFKLMSERIKANQKHKLLREEKSKLE 509 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566666666666666666655544
No 414
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=47.05 E-value=9.8 Score=45.12 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=20.8
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceee
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1055)
..|..+++|-| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34566778887 788899999999863
No 415
>PRK13764 ATPase; Provisional
Probab=46.89 E-value=8.2 Score=48.21 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.7
Q ss_pred ceeEEeecccCCCcceeeec
Q 001550 572 NVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1055)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34489999999999999854
No 416
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=46.63 E-value=14 Score=46.92 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=28.3
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 357776655555544 699999999999999999986
No 417
>PRK04195 replication factor C large subunit; Provisional
Probab=46.45 E-value=13 Score=45.24 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=24.2
Q ss_pred HHhchHHHHHHhhcCc-ceeEEeecccCCCcceeee
Q 001550 556 VFLDTRPLIRSVLDGY-NVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 556 Vf~~~~pLV~svLdGy-N~~IfAYGQTGSGKTyTM~ 590 (1055)
+-.....++.....|. .-.++-||++|+|||++..
T Consensus 22 ~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 22 AKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3333455566555664 4568889999999998763
No 418
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=46.34 E-value=7.4 Score=40.78 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.7
Q ss_pred eeEEeecccCCCcceee
Q 001550 573 VCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 573 ~~IfAYGQTGSGKTyTM 589 (1055)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46889999999999965
No 419
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=46.14 E-value=18 Score=43.54 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=44.0
Q ss_pred EEEEeecCCCCCccc-CCCccEEEeCCCCeEEEeCCCCCC-------CCCceeeeeceeeCCCCChHHHHhch-HHHHHH
Q 001550 496 IRVYCRIRPFLPGQS-KKQTTIEYIGENGELVVSNPLKQG-------KDNHRLFKFNKVFGPEASQEEVFLDT-RPLIRS 566 (1055)
Q Consensus 496 IRV~~RVRP~~~~E~-~~~~~v~~~~~~~~~vi~~p~~~~-------~~~~k~F~FD~VF~~~atQeeVf~~~-~pLV~s 566 (1055)
-..+++|.++...+. .....+.+....+.++-.-|.... ......-+|+-|.+-+..-+++.+.+ .|+...
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p 206 (438)
T PTZ00361 127 PEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHP 206 (438)
T ss_pred CEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCH
Confidence 467889888876543 344445444333433322221110 00111133444433333333333332 233221
Q ss_pred -hhc--Cc--ceeEEeecccCCCcceeee
Q 001550 567 -VLD--GY--NVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 567 -vLd--Gy--N~~IfAYGQTGSGKTyTM~ 590 (1055)
.+. |. ...|+-||++|+|||++.-
T Consensus 207 ~~~~~~gi~~p~gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 207 ELYDDIGIKPPKGVILYGPPGTGKTLLAK 235 (438)
T ss_pred HHHHhcCCCCCcEEEEECCCCCCHHHHHH
Confidence 111 21 2347789999999998763
No 420
>PRK06547 hypothetical protein; Provisional
Probab=45.86 E-value=14 Score=38.72 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=18.6
Q ss_pred HHHHhhcCcceeEEeecccCCCcceee
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1055)
.+..+..+.---|.-+|.+|||||+.-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344444455555667799999999864
No 421
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.70 E-value=1.8e+02 Score=36.37 Aligned_cols=18 Identities=0% Similarity=0.054 Sum_probs=11.2
Q ss_pred eeeeceeeCCCCChHHHH
Q 001550 540 LFKFNKVFGPEASQEEVF 557 (1055)
Q Consensus 540 ~F~FD~VF~~~atQeeVf 557 (1055)
.+.|+..+..=+++.+++
T Consensus 356 ~~~~~~~~~niT~~~~~~ 373 (555)
T TIGR03545 356 VGEIKGEVSNITNDHDLL 373 (555)
T ss_pred cceEEEEEEecCCChhhh
Confidence 456777666666666655
No 422
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=45.68 E-value=5.9e+02 Score=30.31 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=12.9
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHH
Q 001550 437 RVAFESTKHEVLETKKNYSKEFD 459 (1055)
Q Consensus 437 ~~~~~~~k~ei~~~~~~~~~e~~ 459 (1055)
......++.++...+..|..-+.
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~ 363 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQ 363 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666655443
No 423
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=45.54 E-value=14 Score=46.95 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=27.3
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 447765544444433 689999999999999999986
No 424
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.30 E-value=1.6e+02 Score=36.04 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=7.9
Q ss_pred eeeeeceeeCCC
Q 001550 539 RLFKFNKVFGPE 550 (1055)
Q Consensus 539 k~F~FD~VF~~~ 550 (1055)
..|.|-.-|++.
T Consensus 194 ~~~~fpt~f~~~ 205 (472)
T TIGR03752 194 SKFSFPTSFDNA 205 (472)
T ss_pred CcccCccccccc
Confidence 457777777644
No 425
>PHA00729 NTP-binding motif containing protein
Probab=45.15 E-value=14 Score=40.65 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=21.2
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.+++.+..|-=..|+.+|.+|+||||....
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 345555433334799999999999997654
No 426
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=45.09 E-value=16 Score=46.47 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=27.5
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||..+......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 347765544444444 689999999999999999986
No 427
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.93 E-value=4.3e+02 Score=28.43 Aligned_cols=9 Identities=33% Similarity=0.213 Sum_probs=4.3
Q ss_pred HHhHHHHHH
Q 001550 258 LLRKVVPLI 266 (1055)
Q Consensus 258 ~l~kvv~e~ 266 (1055)
||.+|-.|+
T Consensus 85 LL~rvrde~ 93 (189)
T PF10211_consen 85 LLLRVRDEY 93 (189)
T ss_pred HHHHHHHHH
Confidence 455554443
No 428
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=44.86 E-value=15 Score=46.60 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=27.3
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 69 PHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 347765544444433 689999999999999999986
No 429
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=44.80 E-value=3.9e+02 Score=30.79 Aligned_cols=47 Identities=11% Similarity=0.262 Sum_probs=29.0
Q ss_pred HHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHH
Q 001550 283 LFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQK 329 (1055)
Q Consensus 283 ~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek 329 (1055)
.+|+-..+++--+..++++.++..+.+..+.-+|+.|-.|-++.=||
T Consensus 217 t~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEk 263 (384)
T KOG0972|consen 217 TLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEK 263 (384)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 34445556666666677777777666666777777765555443333
No 430
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=44.48 E-value=14 Score=46.81 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=28.5
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 447766655555555 599999999999999999986
No 431
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.44 E-value=11 Score=44.61 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=19.4
Q ss_pred HHHHhhcCcceeEEeecccCCCcceee
Q 001550 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1055)
.|..++.|.|+ ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 45667899885 55679999999864
No 432
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=44.08 E-value=15 Score=46.54 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=27.8
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 457766544444433 689999999999999999986
No 433
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=44.07 E-value=12 Score=50.10 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=0.0
Q ss_pred HhchHHHHHHhhcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHH
Q 001550 557 FLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALN 608 (1055)
Q Consensus 557 f~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~ 608 (1055)
+..+..+++.+-+|...+++. .+||||||+||.+ ++.+.+.
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~----------li~~L~~ 459 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA----------LMYRLLK 459 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH----------HHHHHHh
No 434
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=44.04 E-value=9e+02 Score=31.97 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 001550 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHV 477 (1055)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~ 477 (1055)
..+++..-.+++.++..+-+.|.. |..-.+.+.++.+.|+.
T Consensus 813 ~a~lr~~~~slk~~l~e~ar~Was----l~~~~~vl~e~l~~~ke 853 (984)
T COG4717 813 VAELRQRRESLKEDLEEKARKWAS----LRLAVQVLEEALRLFKE 853 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 346777778888888888877764 33344445555555543
No 435
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=43.94 E-value=64 Score=41.77 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.5
Q ss_pred eEEeecccCCCcceee
Q 001550 574 CIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1055)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999999765
No 436
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=43.86 E-value=16 Score=46.28 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=27.8
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 67 PHIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 347766544444444 699999999999999999986
No 437
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=43.73 E-value=12 Score=44.82 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=20.8
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceee
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1055)
..|..+++|.| |++-.+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34667788988 677889999999874
No 438
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=43.71 E-value=13 Score=47.07 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=22.0
Q ss_pred chHHHHHHhhc-----CcceeEEeecccCCCcceeeec
Q 001550 559 DTRPLIRSVLD-----GYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 559 ~~~pLV~svLd-----GyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.+..+++++.. |.+..|+.. +||||||+||..
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 35666677665 344454443 999999999975
No 439
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.69 E-value=7.7 Score=49.42 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHhcC
Q 001550 31 QLSTLVEWLNEMIP 44 (1055)
Q Consensus 31 r~~e~~~WIe~vlg 44 (1055)
...-+..++..++|
T Consensus 75 l~~~i~~yy~e~L~ 88 (713)
T PF05622_consen 75 LLRNIKSYYQEELG 88 (713)
T ss_dssp HHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHcC
Confidence 34467778888888
No 440
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=43.49 E-value=11 Score=42.47 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.5
Q ss_pred cCc-ceeEEeecccCCCcceeeec
Q 001550 569 DGY-NVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 569 dGy-N~~IfAYGQTGSGKTyTM~G 591 (1055)
.|- ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 45677799999999998753
No 441
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=43.49 E-value=5.9e+02 Score=32.75 Aligned_cols=28 Identities=4% Similarity=-0.312 Sum_probs=18.6
Q ss_pred HHHHchhhHHHHHHHhhhcCCCcccCCC
Q 001550 57 LRACLVDGTVLCLVLNKLSPDSVEMGAN 84 (1055)
Q Consensus 57 f~~~LrDGviLC~L~N~l~Pgsv~k~~~ 84 (1055)
+...++-|...|.-.+..+|+..++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (670)
T KOG0239|consen 22 SNPKKRFELARVYSPSVGQPSLFSDVQP 49 (670)
T ss_pred cccccccCccccccccccccccCCcccc
Confidence 4556777777777777777776655433
No 442
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.40 E-value=7.2e+02 Score=30.67 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001550 349 IEISTLKQDLELAKRTHEL 367 (1055)
Q Consensus 349 ~e~~~Lk~ele~~k~~~e~ 367 (1055)
.+...|+.+++..++.+++
T Consensus 81 ~~~~~l~~~le~~~~~~~e 99 (475)
T PRK10361 81 ADLREVTTRMEAAQQHADD 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 443
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=43.33 E-value=8.7 Score=40.74 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=15.4
Q ss_pred CcceeEEeecccCCCcceeee
Q 001550 570 GYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..-..||..||.|||||+++.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 345678999999999988764
No 444
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.28 E-value=8.3 Score=45.51 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=15.9
Q ss_pred eeEEeecccCCCcceeeec
Q 001550 573 VCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1055)
..|.-+|+||+|||+|+..
T Consensus 138 ~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4667899999999999854
No 445
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=43.18 E-value=6.6e+02 Score=30.11 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=23.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 001550 316 LERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLEL 360 (1055)
Q Consensus 316 l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~ 360 (1055)
++-|..|...+.+-..+.++.+.+|+ ++..+++.-+-|-|+.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lk---e~~krdy~fi~etLQE 303 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLK---EQIKRDYKFIAETLQE 303 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 66666676677766666666565553 2344444444444433
No 446
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=43.03 E-value=17 Score=46.08 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=28.1
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 347766554455444 799999999999999999986
No 447
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=42.83 E-value=5.2e+02 Score=28.82 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=6.0
Q ss_pred HHHHHHHHHhHHH
Q 001550 434 QDLRVAFESTKHE 446 (1055)
Q Consensus 434 ~el~~~~~~~k~e 446 (1055)
.-|+..+..++.+
T Consensus 91 ~~Lk~~in~~R~e 103 (230)
T PF10146_consen 91 KPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 448
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=42.80 E-value=9.2e+02 Score=31.71 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=13.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhhc
Q 001550 319 IKTEKTNIAQKEKLEEQNALRLKKE 343 (1055)
Q Consensus 319 l~~e~~k~eek~~~~e~~~~~~~~e 343 (1055)
+..|+..++++.+-.++.++++.+.
T Consensus 675 l~Ke~kElq~rL~~q~KkiDh~ERA 699 (988)
T KOG2072|consen 675 LEKERKELQSRLQYQEKKIDHLERA 699 (988)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3344455555555555556555544
No 449
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.78 E-value=4.4e+02 Score=34.48 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=25.3
Q ss_pred HHHHhchHHHHHHh-hcCcceeEEeecccCCCcceeeecCCCCCCCccchhHHHHHHHHH
Q 001550 554 EEVFLDTRPLIRSV-LDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFE 612 (1055)
Q Consensus 554 eeVf~~~~pLV~sv-LdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~ 612 (1055)
++....+...|+.+ +.|+.+..+-.|- | .|++-+++.+.+.
T Consensus 715 eeA~~~l~~fl~~a~~~g~~~v~IIHGk----------G--------tG~Lr~~v~~~L~ 756 (782)
T PRK00409 715 EEALERLDKYLDDALLAGYGEVLIIHGK----------G--------TGKLRKGVQEFLK 756 (782)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCC----------C--------hhHHHHHHHHHHc
Confidence 33333344455454 4788888877763 3 2788888877665
No 450
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=42.67 E-value=1.3e+02 Score=34.75 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=17.0
Q ss_pred HHHHHhhhhhhhhhhccCCEEEE
Q 001550 477 VILAENRRLYNEVQDLKGNIRVY 499 (1055)
Q Consensus 477 ~~l~erRkL~N~vqelKGnIRV~ 499 (1055)
..|+|||-|.-++|.|+..+-|.
T Consensus 112 qWLEERR~lQgEmQ~LrDKLAia 134 (351)
T PF07058_consen 112 QWLEERRFLQGEMQQLRDKLAIA 134 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888766443
No 451
>PRK10536 hypothetical protein; Provisional
Probab=42.41 E-value=14 Score=41.66 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=27.5
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||....
T Consensus 52 ~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La~a 93 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWISAA 93 (262)
T ss_pred cCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHHHH
Confidence 555556665555554333 2333 34889999999999998643
No 452
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=42.39 E-value=8.8 Score=42.54 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.4
Q ss_pred eeEEeecccCCCcceeeec
Q 001550 573 VCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1055)
..|+-||++|+|||++...
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 3467899999999998643
No 453
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=42.38 E-value=4.9e+02 Score=29.23 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHH
Q 001550 261 KVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQV 311 (1055)
Q Consensus 261 kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~ 311 (1055)
+.+++.++|...+...+..| -.+.-+.|++.|.+|=.+..+....
T Consensus 94 k~l~d~~~~~~~~~~~~~~q------E~~ra~eRl~~LqalYp~v~v~~~e 138 (241)
T PF09321_consen 94 KKLKDAEKRRLRCLQDFYDQ------EIERAQERLRELQALYPEVSVSEVE 138 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhCCCCchhHHH
Confidence 45566666655554433332 3344466788888888887765543
No 454
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=42.17 E-value=8.4 Score=50.16 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001550 381 IESQKKLQELERLLTVSKKKVEELESL 407 (1055)
Q Consensus 381 ~~le~~l~e~~~~l~~~~~~~~~le~~ 407 (1055)
.+|++..+.++..+.+++..+++++..
T Consensus 457 ~eLek~kr~LE~e~~El~~~leE~E~~ 483 (859)
T PF01576_consen 457 HELEKAKRRLEQEKEELQEQLEEAEDA 483 (859)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665543
No 455
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=42.09 E-value=9.5 Score=37.56 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.8
Q ss_pred EEeecccCCCcceeee
Q 001550 575 IFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 575 IfAYGQTGSGKTyTM~ 590 (1055)
|+-+|++|+|||+.+.
T Consensus 2 vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998764
No 456
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=41.92 E-value=4.4e+02 Score=30.55 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001550 351 ISTLKQDLELAKRTHEL 367 (1055)
Q Consensus 351 ~~~Lk~ele~~k~~~e~ 367 (1055)
+..||.+|..+..+|.+
T Consensus 79 ~r~lk~~l~evEekyrk 95 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRK 95 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666555555543
No 457
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=41.81 E-value=17 Score=46.28 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=28.0
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 457766554444444 699999999999999999885
No 458
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.65 E-value=14 Score=43.30 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=43.8
Q ss_pred eeceeeCCCCChHHHHhch-HHHHHH-hh--cCcc--eeEEeecccCCCcceee--------------ecCCCCCCCccc
Q 001550 542 KFNKVFGPEASQEEVFLDT-RPLIRS-VL--DGYN--VCIFAYGQTGSGKTYTM--------------SGPCISSTEDWG 601 (1055)
Q Consensus 542 ~FD~VF~~~atQeeVf~~~-~pLV~s-vL--dGyN--~~IfAYGQTGSGKTyTM--------------~G~~~~~~~~~G 601 (1055)
+|+-|=|-+..=++|.+.+ -||.+- .+ =|.. --|+-||+.|+|||-.- .|+.- -..--|
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl-VqKYiG 227 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL-VQKYIG 227 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH-HHHHhc
Confidence 3444433333334455444 455432 22 2443 24899999999998532 12100 001125
Q ss_pred hhHHHHHHHHHHHHhccCCc
Q 001550 602 VNYRALNDLFEISESRKNSI 621 (1055)
Q Consensus 602 IipRal~~LF~~~~~~~~~~ 621 (1055)
==+|.+++||.....+...+
T Consensus 228 EGaRlVRelF~lArekaPsI 247 (406)
T COG1222 228 EGARLVRELFELAREKAPSI 247 (406)
T ss_pred cchHHHHHHHHHHhhcCCeE
Confidence 55899999999988766554
No 459
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.56 E-value=8.7e+02 Score=31.08 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHhHh
Q 001550 352 STLKQDLEL---AKRTHELHCLQLEEQIY----ETKIESQKKLQELERLLTVSKKKVEE-LESLSESKSQRWKRIEHSYQ 423 (1055)
Q Consensus 352 ~~Lk~ele~---~k~~~e~~~~~le~~~~----~~k~~le~~l~e~~~~l~~~~~~~~~-le~~~~~k~~~~~~~~~~~~ 423 (1055)
+.|.+++.- +++.|.+++..+|.+++ +.+..|.+.+..+..-+..-..++.- -++..+...+..+..++.++
T Consensus 483 ~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ekl~~khqa~~ekeak~~~a~EkKfq 562 (948)
T KOG0577|consen 483 SELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELEKLARKHQAIGEKEAKAASAEEKKFQ 562 (948)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q ss_pred hHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH------------hhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001550 424 SFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFD------------CLGLNLKRLIDAAEKYHVILAENRRLYNEVQ 490 (1055)
Q Consensus 424 ~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~------------~l~~~l~~l~~~~~~y~~~l~erRkL~N~vq 490 (1055)
..+..|++. +++.-+.+.+.+-.-.+..+.++++ -|..+-..|......-..-+.+|.+.|=+++
T Consensus 563 q~i~~qqkk--~l~~~~e~qkkeYK~~KE~~KeeL~e~~stPkrek~e~l~~qKe~Lq~~qaeeEa~ll~~qrqy~ele 639 (948)
T KOG0577|consen 563 QHILGQQKK--ELKAYLEAQKKEYKLNKEQLKEELQENPSTPKREKAEWLLRQKENLQQCQAEEEAGLLRRQRQYLELE 639 (948)
T ss_pred HHHHHhhHH--HHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
No 460
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=41.41 E-value=4.8e+02 Score=28.03 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=12.2
Q ss_pred HHHHHhHHHHHHHHHHhhh
Q 001550 255 VACLLRKVVPLIERRTATQ 273 (1055)
Q Consensus 255 ~~~~l~kvv~e~e~ris~q 273 (1055)
-+.++.-++.|+=|-+|-.
T Consensus 60 r~~ly~~~F~ELIRQVTi~ 78 (189)
T PF10211_consen 60 REELYSQCFDELIRQVTID 78 (189)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3556666777776666654
No 461
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=41.40 E-value=6.4e+02 Score=29.51 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=46.5
Q ss_pred HHHHHHhHhhHHHhhHHHHHHHHHHHHHhH--HHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHH---HHhhhhhhhh
Q 001550 415 WKRIEHSYQSFMGCQLGVIQDLRVAFESTK--HEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVIL---AENRRLYNEV 489 (1055)
Q Consensus 415 ~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k--~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l---~erRkL~N~v 489 (1055)
+......+...+..|..-+++|+..+.... .++...+..+..........++.|..+-..|..+. .+=+++||.+
T Consensus 259 f~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL 338 (356)
T cd09237 259 FKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAGLPKGLEFYDDL 338 (356)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 334445556666777777888887766553 23333333333333344455666777777765543 3557788887
Q ss_pred hhccC
Q 001550 490 QDLKG 494 (1055)
Q Consensus 490 qelKG 494 (1055)
.++-+
T Consensus 339 ~~~~~ 343 (356)
T cd09237 339 LKMAK 343 (356)
T ss_pred HHHHH
Confidence 76543
No 462
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=41.20 E-value=4.1e+02 Score=27.18 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=8.3
Q ss_pred hhhcccchhHHHHHHHHHHH
Q 001550 340 LKKENDDRDIEISTLKQDLE 359 (1055)
Q Consensus 340 ~~~e~~~~~~e~~~Lk~ele 359 (1055)
|.+|.+..+.|-..|++=|.
T Consensus 39 L~~ELDsL~~EkvhLeeiln 58 (134)
T PF15233_consen 39 LQRELDSLNGEKVHLEEILN 58 (134)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 33344444444444444433
No 463
>PRK10869 recombination and repair protein; Provisional
Probab=41.15 E-value=8.2e+02 Score=30.63 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=15.1
Q ss_pred CCCccchhHHHHHHHHHHHHhc
Q 001550 596 STEDWGVNYRALNDLFEISESR 617 (1055)
Q Consensus 596 ~~~~~GIipRal~~LF~~~~~~ 617 (1055)
+..+.|+=+.+...+.+.+...
T Consensus 459 DEpd~gld~~~~~~v~~~l~~l 480 (553)
T PRK10869 459 DEVDVGISGPTAAVVGKLLRQL 480 (553)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH
Confidence 3456688888887777766644
No 464
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=41.08 E-value=18 Score=46.04 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=27.2
Q ss_pred HHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 555 eVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 47765544444444 799999999999999999886
No 465
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=40.98 E-value=18 Score=46.32 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.2
Q ss_pred HHHhchHHHHHHhh-cCcceeEEeecccCCCcceee
Q 001550 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 555 eVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1055)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 47766544444443 799999999999999999986
No 466
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.76 E-value=1.6e+02 Score=38.22 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHhhhhccC
Q 001550 117 MAPVLQCLRSLRASFSFCD 135 (1055)
Q Consensus 117 ~~~Vv~cL~aL~~~~~~k~ 135 (1055)
.-.-++|+.|+..|+....
T Consensus 266 ~l~~lD~l~a~a~~a~~~~ 284 (771)
T TIGR01069 266 EFDFLDSLQARARYAKAVK 284 (771)
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 3445678888888877543
No 467
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.60 E-value=17 Score=43.48 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=16.0
Q ss_pred eeEEeecccCCCcceeee
Q 001550 573 VCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~ 590 (1055)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999999985
No 468
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.49 E-value=7.4e+02 Score=29.95 Aligned_cols=6 Identities=33% Similarity=0.445 Sum_probs=2.5
Q ss_pred EEEEEE
Q 001550 623 YEVGVQ 628 (1055)
Q Consensus 623 ~~V~vS 628 (1055)
|.|.+.
T Consensus 412 y~v~v~ 417 (457)
T TIGR01000 412 YKVIAT 417 (457)
T ss_pred EEEEEE
Confidence 444443
No 469
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=40.29 E-value=16 Score=41.93 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=23.9
Q ss_pred ChHHHHhchHHHHHHhhc--CcceeEEeecccCCCcceeee
Q 001550 552 SQEEVFLDTRPLIRSVLD--GYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 552 tQeeVf~~~~pLV~svLd--GyN~~IfAYGQTGSGKTyTM~ 590 (1055)
.|+++-.....++..... +....++-||++|+|||+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 344444444444544332 222357789999999999875
No 470
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=40.17 E-value=6.1e+02 Score=28.90 Aligned_cols=196 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhhhhcCCCCchHHHHHHhHHHHHHHHHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHH
Q 001550 232 LFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQV 311 (1055)
Q Consensus 232 l~~~~~~~l~~~~~~~~~~~p~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~ 311 (1055)
|...+..-..+.+.+.....-..-..+|.+..+.++.+|..-.=....--.+|......+...-..- ........++
T Consensus 101 L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~~Y~~~---p~Kg~ka~ev 177 (297)
T PF02841_consen 101 LMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEKEYEQE---PGKGVKAEEV 177 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHHHHHHS---S---TTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhc---CCCCccHHHH
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 312 VANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELE 391 (1055)
Q Consensus 312 ~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~ 391 (1055)
+...|+. +...++.+..+.+.....++++...+...+.++...+. ++......+..++.+.+.++
T Consensus 178 L~~fl~~-----------~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~----l~e~~~~~~~~le~~~~~~e 242 (297)
T PF02841_consen 178 LQEFLQS-----------KESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEK----LEEKQKEQEQMLEQQERSYE 242 (297)
T ss_dssp HHHHHHH-----------CHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHH-HHHHHHHhHHHHHHHH
Q 001550 392 RLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQD-LRVAFESTKHEVLETK 451 (1055)
Q Consensus 392 ~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~~~~~~~Q~~~l~e-l~~~~~~~k~ei~~~~ 451 (1055)
..+..+..+++.... +.....+.-+...+..|...+.+ ....+..++.+|..++
T Consensus 243 e~~~~L~ekme~e~~------~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 243 EHIKQLKEKMEEERE------QLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 471
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=40.07 E-value=4.2e+02 Score=28.32 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHH
Q 001550 266 IERRTATQYQNF 277 (1055)
Q Consensus 266 ~e~ris~q~~~~ 277 (1055)
.+..+....++|
T Consensus 72 le~~~~~l~~EL 83 (194)
T PF08614_consen 72 LEQKLAKLQEEL 83 (194)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 444444444333
No 472
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=40.02 E-value=4.2e+02 Score=26.98 Aligned_cols=72 Identities=18% Similarity=0.375 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001550 410 SKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEV 489 (1055)
Q Consensus 410 ~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~v 489 (1055)
..++.|..--..|..++. .+.+.+..+..+|..+..++.. +..-...|+.|......|..++ .+.++|
T Consensus 62 eh~q~Fn~sI~sy~~i~~----~i~~sq~~i~~lK~~L~~ak~~----L~~~~~eL~~L~~~s~~~~~mi----~iL~~I 129 (142)
T PF04048_consen 62 EHYQGFNSSIGSYSQILS----SISESQERIRELKESLQEAKSL----LGCRREELKELWQRSQEYKEMI----EILDQI 129 (142)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 344444444444444332 2444455555555555554432 2233445666666666666554 344555
Q ss_pred hhcc
Q 001550 490 QDLK 493 (1055)
Q Consensus 490 qelK 493 (1055)
++++
T Consensus 130 e~l~ 133 (142)
T PF04048_consen 130 EELR 133 (142)
T ss_pred HHHH
Confidence 5544
No 473
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=39.92 E-value=6e+02 Score=28.75 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=3.1
Q ss_pred Eeeccc
Q 001550 576 FAYGQT 581 (1055)
Q Consensus 576 fAYGQT 581 (1055)
|+|-|.
T Consensus 273 ~~kdQ~ 278 (333)
T KOG1853|consen 273 LEKDQR 278 (333)
T ss_pred hhhhcc
Confidence 455553
No 474
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.86 E-value=12 Score=43.27 Aligned_cols=17 Identities=47% Similarity=0.604 Sum_probs=13.9
Q ss_pred ceeEEeecccCCCccee
Q 001550 572 NVCIFAYGQTGSGKTYT 588 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyT 588 (1055)
.+-|+..|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 34578899999999963
No 475
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=39.79 E-value=9.8e+02 Score=31.16 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCCchHHHHH-HhHHHHHHHHHHhh--hhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHH-HHH--
Q 001550 248 NGDAPHRVACL-LRKVVPLIERRTAT--QYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLER-IKT-- 321 (1055)
Q Consensus 248 ~~~~p~~~~~~-l~kvv~e~e~ris~--q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~-l~~-- 321 (1055)
+.+..|.+-.- +.|+.+||.+|++. -+..|+...+.+++-..- ...+........|..++++ +..
T Consensus 501 ~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~---------~~~s~g~~~a~~Lk~ei~kki~e~~ 571 (762)
T PLN03229 501 QDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRA---------KALSEKKSKAEKLKAEINKKFKEVM 571 (762)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHh---------hhhcccchhhhhhhHHHHHHHHHhc
Q ss_pred HhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HH
Q 001550 322 EKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQL---------------------------EE 374 (1055)
Q Consensus 322 e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~l---------------------------e~ 374 (1055)
.+-.+.++-..+..+|.+ -......-=...||++++.+++..+...... ..
T Consensus 572 ~~~~~kek~ea~~aev~~--~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~ 649 (762)
T PLN03229 572 DRPEIKEKMEALKAEVAS--SGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQE 649 (762)
T ss_pred ccHHHHHHHHHHHHHHHh--cCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhh------HHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHH
Q 001550 375 QIYETKIESQKKLQELERLLTVSKKKVEELES--LSESKS------QRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHE 446 (1055)
Q Consensus 375 ~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~--~~~~k~------~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~e 446 (1055)
+.+.++++.++++.++-+ -.++++++++|.. ...++. +.+...+.+.+..+- +.-.--+|+...+.++.+
T Consensus 650 KIe~L~~eIkkkIe~av~-ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~-~a~~~~~lkek~e~l~~e 727 (762)
T PLN03229 650 KIESLNEEINKKIERVIR-SSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIA-EALNSSELKEKFEELEAE 727 (762)
T ss_pred HHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH-HHhccHhHHHHHHHHHHH
Q ss_pred HHH
Q 001550 447 VLE 449 (1055)
Q Consensus 447 i~~ 449 (1055)
+..
T Consensus 728 ~~~ 730 (762)
T PLN03229 728 LAA 730 (762)
T ss_pred HHH
No 476
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.69 E-value=25 Score=42.50 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=16.8
Q ss_pred ceeEEeecccCCCcceeeec
Q 001550 572 NVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1055)
-..|+-+|.+|+|||+|..-
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45788899999999999753
No 477
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=39.35 E-value=6.2e+02 Score=28.73 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001550 384 QKKLQELERLLTVSKKKVEELES 406 (1055)
Q Consensus 384 e~~l~e~~~~l~~~~~~~~~le~ 406 (1055)
+-++.+|+.+|...+..-++|.+
T Consensus 235 ~Gria~Le~eLAmQKs~seElks 257 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKS 257 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHH
Confidence 44566666666665555555543
No 478
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.07 E-value=4.6e+02 Score=29.16 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001550 383 SQKKLQELERLLTVSKKKVEE 403 (1055)
Q Consensus 383 le~~l~e~~~~l~~~~~~~~~ 403 (1055)
|++.++-+..+..+++++..+
T Consensus 182 LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 182 LEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHhchhHHHHHHHHHHH
Confidence 333344344444444444333
No 479
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=39.05 E-value=6.4e+02 Score=28.80 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=21.5
Q ss_pred hCCCCC-CccccccCCCchHHHHHHHHHHhhhh
Q 001550 101 DMGLPR-FELSDLEQGNMAPVLQCLRSLRASFS 132 (1055)
Q Consensus 101 ~~Glp~-Fe~~DLE~kn~~~Vv~cL~aL~~~~~ 132 (1055)
.+|-|. +...-+-.-||.-|-+||+.|-..++
T Consensus 2 ~LGypr~iSmenFrtPNF~LVAeiL~WLv~ryd 34 (267)
T PF10234_consen 2 ALGYPRLISMENFRTPNFELVAEILRWLVKRYD 34 (267)
T ss_pred CCCCCCCCcHHHcCCCChHHHHHHHHHHHHHcC
Confidence 366666 22222233489999999999977776
No 480
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=39.04 E-value=9.1e+02 Score=31.45 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHH-----HHhhhHHHHHHH----H
Q 001550 263 VPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIK-----TEKTNIAQKEKL----E 333 (1055)
Q Consensus 263 v~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~-----~e~~k~eek~~~----~ 333 (1055)
+.||-.|+-.-.+.+..+-+-.-...++.-+.|+.-.......+.+...+.+..+.+- .|++.+++.+++ |
T Consensus 852 ~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE 931 (1259)
T KOG0163|consen 852 TIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQE 931 (1259)
T ss_pred HHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhcccchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 334 EQNALRLKKENDDRDI----EISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEE 403 (1055)
Q Consensus 334 e~~~~~~~~e~~~~~~----e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~ 403 (1055)
.-++.|-.+|-|...+ |...++.|++.-++.-|++....+.....+..+++.++.....+-.+.+++++.
T Consensus 932 ~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~~Eq 1005 (1259)
T KOG0163|consen 932 LAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQLEQ 1005 (1259)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
No 481
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=38.87 E-value=60 Score=40.94 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=15.6
Q ss_pred ceeEEeecccCCCcceee
Q 001550 572 NVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 572 N~~IfAYGQTGSGKTyTM 589 (1055)
|..+|--|.||||||+-+
T Consensus 280 ~QVLiI~GeTGSGKTTQi 297 (902)
T KOG0923|consen 280 HQVLIIVGETGSGKTTQI 297 (902)
T ss_pred CcEEEEEcCCCCCccccc
Confidence 567888999999999776
No 482
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.83 E-value=1.3e+02 Score=31.97 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=3.9
Q ss_pred HhhhhhHHH
Q 001550 277 FKNQNNLFR 285 (1055)
Q Consensus 277 ~~~q~~~~~ 285 (1055)
.++|.|++-
T Consensus 98 fraQRN~YI 106 (192)
T PF05529_consen 98 FRAQRNMYI 106 (192)
T ss_pred HHHHHhHHH
Confidence 344444443
No 483
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=38.63 E-value=5.7e+02 Score=28.05 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 382 ESQKKLQELERLLTVSKKKVEELE 405 (1055)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~~~le 405 (1055)
.|+..++.++..+..+++++.++.
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN 163 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVN 163 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555544443
No 484
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=38.34 E-value=13 Score=41.79 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=21.8
Q ss_pred HHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
.-+++..+.. +-.++-+|++|+|||-++..
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHh
Confidence 3456665543 55679999999999987743
No 485
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.30 E-value=18 Score=43.70 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=20.3
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceee
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1055)
..|..++.|.|+ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 356678899975 56679999999864
No 486
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=38.15 E-value=2.5e+02 Score=25.05 Aligned_cols=21 Identities=43% Similarity=0.556 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001550 384 QKKLQELERLLTVSKKKVEEL 404 (1055)
Q Consensus 384 e~~l~e~~~~l~~~~~~~~~l 404 (1055)
+.+.+++...+..++++++++
T Consensus 38 E~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 38 EKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555443
No 487
>COG5283 Phage-related tail protein [Function unknown]
Probab=38.13 E-value=1.2e+03 Score=31.84 Aligned_cols=154 Identities=18% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001550 335 QNALRLKKENDDRDIEISTLKQDLELAK-------RTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1055)
Q Consensus 335 ~~~~~~~~e~~~~~~e~~~Lk~ele~~k-------~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~ 407 (1055)
..+..|..-.++.+.+-..+..++..++ ..|+.....++.+ +..-+++.+.++|+-...+..++...++...
T Consensus 22 ~~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~-k~~~~~~kqe~~evn~at~a~~kay~e~~~q 100 (1213)
T COG5283 22 KNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQ-KKAYEDLKQEVKEVNRATQASKKAYQEYNAQ 100 (1213)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h---hhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 001550 408 S---ESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRR 484 (1055)
Q Consensus 408 ~---~~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRk 484 (1055)
. +.+.+.....-..+.+.+..|+..++.+..++..+-.-|..-...|..--+.++..-..+..+.+.|.. ++.
T Consensus 101 ~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~----q~~ 176 (1213)
T COG5283 101 YTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGR----QTE 176 (1213)
T ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHH----HHH
Q ss_pred hhh-hhhhcc
Q 001550 485 LYN-EVQDLK 493 (1055)
Q Consensus 485 L~N-~vqelK 493 (1055)
-+| ++++.+
T Consensus 177 aln~q~~~t~ 186 (1213)
T COG5283 177 ALNKQLERTK 186 (1213)
T ss_pred HHHHHHHhhh
No 488
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=37.99 E-value=6.6e+02 Score=28.83 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=12.5
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHH
Q 001550 336 NALRLKKENDDRDIEISTLKQDLELAKR 363 (1055)
Q Consensus 336 ~~~~~~~e~~~~~~e~~~Lk~ele~~k~ 363 (1055)
.+++|.||..+.+--+.+|..-|+.-|+
T Consensus 26 QldkLkKE~qQrQfQleSlEAaLqKQKq 53 (307)
T PF10481_consen 26 QLDKLKKERQQRQFQLESLEAALQKQKQ 53 (307)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 489
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=37.84 E-value=17 Score=46.49 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=27.3
Q ss_pred eeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCcceeeec
Q 001550 542 KFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 542 ~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1055)
+||.+++ |+.+-.....+...+-.|--..++-||++|+|||++...
T Consensus 26 tldd~vG----Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 26 TLEEFVG----QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cHHHhcC----cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 4555554 444443323333333344445678899999999988753
No 490
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=37.82 E-value=13 Score=41.56 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=16.8
Q ss_pred cCcceeEEeecccCCCcceeee
Q 001550 569 DGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 569 dGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
.|....++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3444457889999999998764
No 491
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=37.66 E-value=4.9e+02 Score=27.02 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHH
Q 001550 254 RVACLLRKVVPLIE 267 (1055)
Q Consensus 254 ~~~~~l~kvv~e~e 267 (1055)
+|..-++..|.|||
T Consensus 18 vIqgEI~~FvkEFE 31 (145)
T PF14942_consen 18 VIQGEIRYFVKEFE 31 (145)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777888887
No 492
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=37.63 E-value=7.5e+02 Score=30.08 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Q 001550 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDL 358 (1055)
Q Consensus 326 ~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~el 358 (1055)
++.-++...++..+|....++.+--|..|+...
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV 236 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLRKDV 236 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555666666666655566666553
No 493
>PLN03025 replication factor C subunit; Provisional
Probab=37.50 E-value=16 Score=41.76 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.1
Q ss_pred eEEeecccCCCcceeeec
Q 001550 574 CIFAYGQTGSGKTYTMSG 591 (1055)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1055)
.++-||+.|+|||++...
T Consensus 36 ~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 36 NLILSGPPGTGKTTSILA 53 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 456699999999999865
No 494
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=37.50 E-value=16 Score=44.02 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=21.1
Q ss_pred HHHHHhhcCcceeEEeecccCCCcceeee
Q 001550 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1055)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1055)
..+..+++|.|+.+ ..+||||||.+..
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay~ 142 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAFL 142 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHHH
Confidence 46778899998755 5599999997653
No 495
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=37.49 E-value=6.7e+02 Score=32.97 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred hHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 001550 282 NLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELA 361 (1055)
Q Consensus 282 ~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~ 361 (1055)
++...+.+.+..++.+++. .++.+.+..++...+.+.-..+.-...++ ...+....+..|++.|...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-------~l~~lq~~~~~~~~~~~~~a~~~~~~~~~------~i~qe~~~n~~Lsq~L~~~ 77 (835)
T COG3264 11 ELLQSRRELLTAESAQLEA-------ALQLLQEAVNSKRQEEAEPAAEEAELQAE------LIQQELAINDQLSQALNQQ 77 (835)
T ss_pred hhHHhhhhhhhhHHHHHHH-------HHHHHHHHhhhhcccccccchhhcccchh------hHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHhHhhHHHhhHHHHHHHH
Q 001550 362 KRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLS----ESKSQRWKRIEHSYQSFMGCQLGVIQDLR 437 (1055)
Q Consensus 362 k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~----~~k~~~~~~~~~~~~~~~~~Q~~~l~el~ 437 (1055)
.+......++ +.+++++...+....+.+++.-... ..-....+++..--..-...+.-.+.+.+
T Consensus 78 ~~r~n~~~~d------------d~~l~~l~~ql~q~~r~i~eq~~~lr~sL~l~~~~~~q~~~lP~~~~~~e~~~v~~eR 145 (835)
T COG3264 78 TERLNALASD------------DRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQER 145 (835)
T ss_pred HHHhhhhhhh------------hHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCccchhHHHHHH
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001550 438 VAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEV 489 (1055)
Q Consensus 438 ~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~v 489 (1055)
..+.+-+..|.+....- +++. .++......+...||.|+|.+
T Consensus 146 ~~L~~e~~~in~~~~~~-e~ls---------~~~~~~ld~I~~~RReLf~~~ 187 (835)
T COG3264 146 DALQAEKAYINALEGQA-EQLT---------AEVRDILDQILDTRRELLNSL 187 (835)
T ss_pred HHHhhhHHHHHHHhcch-hhhC---------HHHHHHHHHHHHHHHHHHHHH
No 496
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.42 E-value=9.5e+02 Score=30.30 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCchHHHHHHhHHHHHHHHH--HhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccc
Q 001550 228 STKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERR--TATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGT 305 (1055)
Q Consensus 228 ~~~~l~~~~~~~l~~~~~~~~~~~p~~~~~~l~kvv~e~e~r--is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~ 305 (1055)
.+-++++.+...+... ..-.+++..+..+...+=+=...= ++.+..+.-..++.--.+-+...+|+..|..|+...
T Consensus 239 ~~~~~~~~l~~a~~~l--~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY 316 (557)
T COG0497 239 DTVSALSLLGRALEAL--EDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKY 316 (557)
T ss_pred CchhHHHHHHHHHHHH--HHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 306 TEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQK 385 (1055)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~ 385 (1055)
...++.+..+.++++.|.+.++. .+.....|+.++..++..|.+.+..|-..+++.=.+|++
T Consensus 317 ~~~~~~l~~~~~~~~~el~~L~~------------------~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~ 378 (557)
T COG0497 317 GVTIEDLLEYLDKIKEELAQLDN------------------SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEK 378 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhh------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 001550 386 KLQELERLL 394 (1055)
Q Consensus 386 ~l~e~~~~l 394 (1055)
.+...=..|
T Consensus 379 ~v~~eL~~L 387 (557)
T COG0497 379 EVTAELKAL 387 (557)
T ss_pred HHHHHHHhc
No 497
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=37.29 E-value=3.7e+02 Score=25.55 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------
Q 001550 336 NALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSE------ 409 (1055)
Q Consensus 336 ~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~------ 409 (1055)
++..+..+.+.....|..++..+..++..|+....... .....+..++....+........+..|+.|+....
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~ 80 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPD-ADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASG 80 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccC
Q ss_pred -hhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Q 001550 410 -SKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEF 458 (1055)
Q Consensus 410 -~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~ 458 (1055)
.... .+......|...+..+-.+-...+..|.+.+
T Consensus 81 ~~~~r--------------~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~ 116 (117)
T smart00503 81 SASDR--------------TRKAQTEKLRKKFKEVMNEFQRLQRKYRERE 116 (117)
T ss_pred CHhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 498
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=37.18 E-value=6.2e+02 Score=28.06 Aligned_cols=208 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHhhhcccc
Q 001550 268 RRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLER-IKTEKTNIAQKEKLEEQNALRLKKENDD 346 (1055)
Q Consensus 268 ~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~-l~~e~~k~eek~~~~e~~~~~~~~e~~~ 346 (1055)
.+++.-.+.+.. +...-+...+.|..+-+..-..-.+.+..+...|+. .+.-.+....-...-++.+..+. +.
T Consensus 5 ~KL~~i~e~~~~---f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~---~~ 78 (247)
T PF06705_consen 5 SKLASINERFSG---FESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQ---ER 78 (247)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHH
Q 001550 347 RDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFM 426 (1055)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~k~~~~~~~~~~~~~~~ 426 (1055)
....+.....++...=......|..++....+-+.+....+ +.....+.+++.++.+.-+.....+...+..+
T Consensus 79 v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~i---e~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i---- 151 (247)
T PF06705_consen 79 VENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDI---EELNQELVRELNELQEAFENERNEREEREENI---- 151 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCE
Q 001550 427 GCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGNI 496 (1055)
Q Consensus 427 ~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~y~~~l~erRkL~N~vqelKGnI 496 (1055)
++.|......+...+...+......+..|...+..+......+..-. +-.+..++..+|+.|
T Consensus 152 ------~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f--~~~v~~Ei~~lk~~l 213 (247)
T PF06705_consen 152 ------LKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQF--QNFVLEEIAALKNAL 213 (247)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHH
No 499
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=37.16 E-value=7.8e+02 Score=29.23 Aligned_cols=157 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHhh------------hhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHH
Q 001550 263 VPLIERRTATQYQNFKN------------QNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKE 330 (1055)
Q Consensus 263 v~e~e~ris~q~~~~~~------------q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~ 330 (1055)
+.+||+||+.-=..+.. ...-+-........++..|.. ..++.+...++.|..+.+.+.+++
T Consensus 211 ~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~------~~Ld~i~~rl~~L~~~~~~l~~~~ 284 (388)
T PF04912_consen 211 AADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP------AKLDSIERRLKSLLSELEELAEKR 284 (388)
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred H---------HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001550 331 K---------LEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKV 401 (1055)
Q Consensus 331 ~---------~~e~~~~~~~~e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~ 401 (1055)
+ ...+++=.++...+...--+-.+-+.|..++..|+. ..++-..|..+....
T Consensus 285 ~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~-------------------a~~~~~~l~~le~~q 345 (388)
T PF04912_consen 285 KEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEE-------------------AAEFSQTLSELESQQ 345 (388)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhH
Q 001550 402 EELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTK 444 (1055)
Q Consensus 402 ~~le~~~~~k~~~~~~~~~~~~~~~~~Q~~~l~el~~~~~~~k 444 (1055)
..+......+...+...+..+..-+..=...++.|..-+..++
T Consensus 346 ~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 346 SDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 500
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=37.14 E-value=28 Score=40.69 Aligned_cols=27 Identities=37% Similarity=0.704 Sum_probs=0.0
Q ss_pred HHHHHhhcCc---ceeEEeecccCCCcceee
Q 001550 562 PLIRSVLDGY---NVCIFAYGQTGSGKTYTM 589 (1055)
Q Consensus 562 pLV~svLdGy---N~~IfAYGQTGSGKTyTM 589 (1055)
|.+...|.|. --|||+ |+||||||+-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Done!