Query 001552
Match_columns 1055
No_of_seqs 251 out of 392
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 17:06:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001552.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_849-853//hhsearch_pdb/001552hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ocu_A Lipoprotein E; hydrolas 1.0 1 1 75.5 6.2 114 850-987 56-188 (262)
2 3pct_A Class C acid phosphatas 1.0 1 1 75.0 7.3 113 851-987 57-188 (260)
3 1ltq_A Polynucleotide kinase; 1.0 1 1 74.9 8.4 172 807-995 111-293 (301)
4 2i33_A Acid phosphatase; HAD s 1.0 1 1 64.1 3.5 113 851-988 58-188 (258)
5 2obb_A Hypothetical protein; s 1.0 1 1 54.8 7.9 67 851-929 2-68 (142)
6 2gmw_A D,D-heptose 1,7-bisphos 1.0 1 1 54.5 10.9 130 851-994 24-170 (211)
7 3zvl_A Bifunctional polynucleo 1.0 1 1 53.7 10.0 127 849-994 55-213 (416)
8 1k1e_A Deoxy-D-mannose-octulos 1.0 1 1 52.7 7.3 112 852-994 8-121 (180)
9 3m1y_A Phosphoserine phosphata 1.0 1 1 52.3 4.3 141 852-1008 4-190 (217)
10 4eze_A Haloacid dehalogenase-l 1.0 1 1 52.1 5.3 142 850-1008 106-294 (317)
No 1
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=1.00 E-value=1 Score=75.53 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCCCCCCCCC-------CC-CCC-------CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHH
Q ss_conf 89929999267852144333-------34-455-------5677887146999999999869919998133466-79999
Q 001552 850 WNTRIVISDVDGTITKSDVL-------GQ-FMP-------LVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIV-QAYHT 913 (1055)
Q Consensus 850 ~~dKIVISDIDGTITKSDvl-------Gh-IlP-------~IGkDWTH~GVAkLYskI~~NGYkIIYLSARpI~-qAd~T 913 (1055)
...++||+|||||++-.... +. +.+ ..+...+.+|+.+++..++..|++++|+|+|+-. +...|
T Consensus 56 ~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T 135 (262)
T 3ocu_A 56 GKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGT 135 (262)
T ss_dssp TCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHH
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 99849999899768777065665322556689889999998278877725999999999879949998189850219999
Q ss_pred HHHHHHCCCCCCCCCC-C--CEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHH
Q ss_conf 9998750018967999-9--455299998741003442149348899999999853899999789725997402888
Q 001552 914 RRFLFTLKQDGKALPD-G--PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEIS 987 (1055)
Q Consensus 914 R~yL~~i~QdG~~LP~-G--PILLSPD~Lf~AL~REVI~kkPeeFKIacL~dIk~LFP~~~nPFyAGFGNR~TDv~A 987 (1055)
..||. ..++|. . .|++.++ ..+|...+..|... +..+++-+|+...|..+
T Consensus 136 ~~~L~-----~lGi~~~~~~~Lilr~~---------------~~~K~~~r~~l~~~----Gy~iv~~vGD~~~Dl~~ 188 (262)
T 3ocu_A 136 IDDMK-----RLGFNGVEESAFYLKKD---------------KSAKAARFAEIEKQ----GYEIVLYVGDNLDDFGN 188 (262)
T ss_dssp HHHHH-----HHTCSCCSGGGEEEESS---------------CSCCHHHHHHHHHT----TEEEEEEEESSGGGGCS
T ss_pred HHHHH-----HCCCCCCCCCCEECCCC---------------CCCHHHHHHHHHHC----CCCEEEEECCCHHHHCC
T ss_conf 99999-----82969556541350688---------------89749999999964----99789997998678265
No 2
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=1.00 E-value=1 Score=74.99 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCCCCCCCC-------CC-CCC-------CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHHH
Q ss_conf 9929999267852144333-------34-455-------5677887146999999999869919998133466-799999
Q 001552 851 NTRIVISDVDGTITKSDVL-------GQ-FMP-------LVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIV-QAYHTR 914 (1055)
Q Consensus 851 ~dKIVISDIDGTITKSDvl-------Gh-IlP-------~IGkDWTH~GVAkLYskI~~NGYkIIYLSARpI~-qAd~TR 914 (1055)
..++||+|||||++-+... +. +.+ ..|...+.+|+.++++.+++.|++++|+|+|+.. +...|.
T Consensus 57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~ 136 (260)
T 3pct_A 57 KKKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTV 136 (260)
T ss_dssp -CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH
T ss_conf 99989998985674781677763246777887899999983788778039999999998799599970898613099999
Q ss_pred HHHHHCCCCCCCCCCC---CEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHH
Q ss_conf 9987500189679999---455299998741003442149348899999999853899999789725997402888
Q 001552 915 RFLFTLKQDGKALPDG---PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEIS 987 (1055)
Q Consensus 915 ~yL~~i~QdG~~LP~G---PILLSPD~Lf~AL~REVI~kkPeeFKIacL~dIk~LFP~~~nPFyAGFGNR~TDv~A 987 (1055)
.||. ..++|.. ++++.++ ..+|...+..|... ...+.+-+|+...|..+
T Consensus 137 ~~L~-----~lGi~~~~~~~Lilr~~---------------~~~K~~~r~~L~~~----gy~iv~~iGD~~~Dl~~ 188 (260)
T 3pct_A 137 DDMK-----RLGFTGVNDKTLLLKKD---------------KSNKSVRFKQVEDM----GYDIVLFVGDNLNDFGD 188 (260)
T ss_dssp HHHH-----HHTCCCCSTTTEEEESS---------------CSSSHHHHHHHHTT----TCEEEEEEESSGGGGCG
T ss_pred HHHH-----HCCCCCCCCCEEEECCC---------------CCCHHHHHHHHHHC----CCCEEEEECCCHHHCCC
T ss_conf 9999-----81959656651573589---------------98769999999956----99789997998677075
No 3
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=1.00 E-value=1 Score=74.88 Aligned_cols=172 Identities=19% Similarity=0.167 Sum_probs=103.9
Q ss_pred CCCCCHHHHHHCCCCCCCCEEEEE-EEEECCCCEEEEEEE-EEE-CCCCCEEEEECCCCCCCCCCCCCCCC----CCCCC
Q ss_conf 148899999735799985189999-961027620123799-986-18992999926785214433334455----56778
Q 001552 807 VLTPTSEQLASLNLKEGKNSVTFT-FSTAMLGKQQVDARI-YLW-KWNTRIVISDVDGTITKSDVLGQFMP----LVGVD 879 (1055)
Q Consensus 807 sLrlTSeQL~kLNLk~G~N~V~Fs-VtT~~qG~~~Vea~I-YLW-~~~dKIVISDIDGTITKSDvlGhIlP----~IGkD 879 (1055)
-|..+.+.+.++...++.+.+.-. +..++..-....... |+. +...+.++.|+|||+.... +..| .++..
T Consensus 111 ~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl~~~~---~~~~~~~~~~~~~ 187 (301)
T 1ltq_A 111 VFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMN---GRGPYDLEKCDTD 187 (301)
T ss_dssp ECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTTTBCCS---SCCTTCGGGGGGC
T ss_pred EEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEEECCCCCCCCC---CCCCHHHHHCCCC
T ss_conf 9979999999999851677898999999999874146776231255546569993778711446---7783556406666
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCC---CCCCCCCCCCEECCCCCCCCCCHHHHHCCCCH-HH
Q ss_conf 871469999999998699199981334667999999987500---18967999945529999874100344214934-88
Q 001552 880 WSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLK---QDGKALPDGPVVISPDGLFPSLFREVIRRAPH-EF 955 (1055)
Q Consensus 880 WTH~GVAkLYskI~~NGYkIIYLSARpI~qAd~TR~yL~~i~---QdG~~LP~GPILLSPD~Lf~AL~REVI~kkPe-eF 955 (1055)
.+.+|+.+++..++++||++.++|+|+..++..++.||..+. ++.++|+-..+++..+. .++|+ +.
T Consensus 188 ~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~kp~p~~ 257 (301)
T 1ltq_A 188 VINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQG----------DTRKDDVV 257 (301)
T ss_dssp CBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCCCCSEEEECCTT----------CCSCHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHEEECCCC----------CCCHHHHH
T ss_conf 79868999999999779869999389843314289999860432222358982113553678----------87688999
Q ss_pred HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 9999999985389999978972599740288898519899
Q 001552 956 KIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1055)
Q Consensus 956 KIacL~dIk~LFP~~~nPFyAGFGNR~TDv~AYr~VGIP~ 995 (1055)
+..+++.+.. ++ .... ..+|++..|+.+++++|+++
T Consensus 258 ~~~~~~~~~~--~~-~~~~-~~vgD~~~di~~a~~aG~~~ 293 (301)
T 1ltq_A 258 KEEIFWKHIA--PH-FDVK-LAIDDRTQVVEMWRRIGVEC 293 (301)
T ss_dssp HHHHHHHHTT--TT-CEEE-EEEECCHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHC--CC-CCEE-EEECCCHHHHHHHHHCCCEE
T ss_conf 9999999734--36-4248-88278178999999849917
No 4
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=1.00 E-value=1 Score=64.14 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCCCCCCCC-----CCCCCCCCC----------CCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
Q ss_conf 9929999267852144333-----344555677----------8871469999999998699199981334667999999
Q 001552 851 NTRIVISDVDGTITKSDVL-----GQFMPLVGV----------DWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRR 915 (1055)
Q Consensus 851 ~dKIVISDIDGTITKSDvl-----GhIlP~IGk----------DWTH~GVAkLYskI~~NGYkIIYLSARpI~qAd~TR~ 915 (1055)
..++|||||||||+.+... ....+. .. ....+|+.+++..++++|+++.++|+|+......+..
T Consensus 58 ~~kavifDlDGTLld~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~ 136 (258)
T 2i33_A 58 KKPAIVLDLDETVLDNSPHQAMSVKTGKGY-PYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIK 136 (258)
T ss_dssp SEEEEEECSBTTTEECHHHHHHHHHHSCCT-TTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 997899938666767989999998356636-7899999970899758339999999998899799984995657999999
Q ss_pred HHHHCCCCCCCCC---CCCEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHH
Q ss_conf 9875001896799---994552999987410034421493488999999998538999997897259974028889
Q 001552 916 FLFTLKQDGKALP---DGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISY 988 (1055)
Q Consensus 916 yL~~i~QdG~~LP---~GPILLSPD~Lf~AL~REVI~kkPeeFKIacL~dIk~LFP~~~nPFyAGFGNR~TDv~AY 988 (1055)
+|. ..+|+ ...++++++.. .+|+.++. +... ...+ ...+|+..+|+.+-
T Consensus 137 ~L~-----~~Gl~~v~~~~vi~~~~~~----------~K~~~~~~-----~~~~---~~~~-~l~VGDs~~Di~aA 188 (258)
T 2i33_A 137 NLE-----RVGAPQATKEHILLQDPKE----------KGKEKRRE-----LVSQ---THDI-VLFFGDNLSDFTGF 188 (258)
T ss_dssp HHH-----HHTCSSCSTTTEEEECTTC----------CSSHHHHH-----HHHH---HEEE-EEEEESSGGGSTTC
T ss_pred HHH-----HCCCCCCCCCEEEECCCCC----------CCCHHHHH-----HHHH---CCCC-EEEECCCHHHHCCC
T ss_conf 999-----8698967776689779987----------88289999-----9972---8996-59969877776356
No 5
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=1.00 E-value=1 Score=54.83 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=53.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9929999267852144333344555677887146999999999869919998133466799999998750018967999
Q 001552 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD 929 (1055)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~IGkDWTH~GVAkLYskI~~NGYkIIYLSARpI~qAd~TR~yL~~i~QdG~~LP~ 929 (1055)
+-|+|++|+||||..++. +.+++. .+++.+..++++++||+|+.+|+|+.-....+..||. .+++|-
T Consensus 2 ~~k~i~~DlDGTL~~~~~-----~~i~~~--~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~-----~~gi~~ 68 (142)
T 2obb_A 2 NAMTIAVDFDGTIVEHRY-----PRIGEE--IPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCR-----ARGLEF 68 (142)
T ss_dssp CCCEEEECCBTTTBCSCT-----TSCCCB--CTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHH-----TTTCCC
T ss_pred CCEEEEEECCCCCCCCCC-----CCCCCC--CHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH-----HCCCCE
T ss_conf 970999978678898997-----654656--9899999999998899899992899644999999999-----839984
No 6
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=1.00 E-value=1 Score=54.45 Aligned_cols=130 Identities=14% Similarity=0.153 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHH------------HHHHHHHHHH
Q ss_conf 9929999267852144333344555677887146999999999869919998133466------------7999999987
Q 001552 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIV------------QAYHTRRFLF 918 (1055)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~IGkDWTH~GVAkLYskI~~NGYkIIYLSARpI~------------qAd~TR~yL~ 918 (1055)
.-|++++|+||||+..+. .......-...+|+.++...++++||++..+|+++.. .....+..|.
T Consensus 24 ~~k~v~~D~DGTL~~~~~---~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (211)
T 2gmw_A 24 SVPAIFLDRDGTINVDHG---YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLA 100 (211)
T ss_dssp CBCEEEECSBTTTBCCCS---SCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCEECCCC---CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 398999939997188998---66671227688689999999998899599997959867884679999999999999999
Q ss_pred HCCCCCCCCCCCCEECCCC---CCCCCCHHHHHCCCC--HHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCC
Q ss_conf 5001896799994552999---987410034421493--48899999999853899999789725997402888985198
Q 001552 919 TLKQDGKALPDGPVVISPD---GLFPSLFREVIRRAP--HEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1055)
Q Consensus 919 ~i~QdG~~LP~GPILLSPD---~Lf~AL~REVI~kkP--eeFKIacL~dIk~LFP~~~nPFyAGFGNR~TDv~AYr~VGI 993 (1055)
..+++--.++.+++ ...+....++..++| +.|+..+ +.+ .+=|. ..+ .+|++.+|+.+-+++|+
T Consensus 101 -----~~gl~f~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~~~-~~l-gi~~~--~~~--~VGD~~~Di~~a~~aG~ 169 (211)
T 2gmw_A 101 -----DRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSAR-DYL-HIDMA--ASY--MVGDKLEDMQAAVAANV 169 (211)
T ss_dssp -----HTTCCCSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHH-HHH-TBCGG--GCE--EEESSHHHHHHHHHTTC
T ss_pred -----HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHC-CCCHH--HEE--EECCCHHHHHHHHHCCC
T ss_conf -----85996577997876877756666766757999989999999-983-99989--979--98488888999998799
Q ss_pred C
Q ss_conf 9
Q 001552 994 P 994 (1055)
Q Consensus 994 P 994 (1055)
.
T Consensus 170 ~ 170 (211)
T 2gmw_A 170 G 170 (211)
T ss_dssp S
T ss_pred C
T ss_conf 4
No 7
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=1.00 E-value=1 Score=53.68 Aligned_cols=127 Identities=20% Similarity=0.350 Sum_probs=78.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEEECCCHH---------HHHHHHHHHH
Q ss_conf 189929999267852144333344555677887--14699999999986991999813346---------6799999998
Q 001552 849 KWNTRIVISDVDGTITKSDVLGQFMPLVGVDWS--QTGVAHLFSAIKENGYQLLFLSARAI---------VQAYHTRRFL 917 (1055)
Q Consensus 849 ~~~dKIVISDIDGTITKSDvlGhIlP~IGkDWT--H~GVAkLYskI~~NGYkIIYLSARpI---------~qAd~TR~yL 917 (1055)
....|+|++|+||||..... |..++....+|. .+|+.++...++++||++.-+|.++. ......+..|
T Consensus 55 ~~~~k~v~fD~DGTL~~~~~-~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l 133 (416)
T 3zvl_A 55 KPQGKVAAFDLDGTLITTRS-GKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVL 133 (416)
T ss_dssp CCCSSEEEECSBTTTEECSS-CSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 87770899968897253078-76678898995033545999999999789969999698301478779999999999999
Q ss_pred HHCCCCCCCCCCCCEECCCCCCCCCCHHHHHCCCCH--HHHHHHHHHHHH--HCCCCCCCEEECCCCCC-----------
Q ss_conf 750018967999945529999874100344214934--889999999985--38999997897259974-----------
Q 001552 918 FTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPH--EFKIACLEDIKA--LFPSDCNPFYAGFGNRD----------- 982 (1055)
Q Consensus 918 ~~i~QdG~~LP~GPILLSPD~Lf~AL~REVI~kkPe--eFKIacL~dIk~--LFP~~~nPFyAGFGNR~----------- 982 (1055)
. ..+++---++. .+ ++..++|+ .|..++ +.+-. ...+ ...+| +|++.
T Consensus 134 ~-----~lgl~fd~i~~-~~--------~~~~~KP~p~~~~~a~-~~l~~~~~v~~-~~~l~--VGDs~gr~~~~~~~~~ 195 (416)
T 3zvl_A 134 E-----KLGVPFQVLVA-TH--------AGLNRKPVSGMWDHLQ-EQANEGIPISV-EDSVF--VGDAAGRLANWAPGRK 195 (416)
T ss_dssp H-----HHTSCCEEEEE-CS--------SSTTSTTSSHHHHHHH-HHSSTTCCCCG-GGCEE--ECSCSCBCTTSSTTCC
T ss_pred H-----HCCCCEEEEEE-CC--------CCCCCCCCHHHHHHHH-HHHCCCCCCCH-HHEEE--EECCCCCCCCCCCCCC
T ss_conf 9-----76997799997-89--------8988899889999999-97177888777-99499--9789998655666655
Q ss_pred ------HHHHHHHHCCCC
Q ss_conf ------028889851989
Q 001552 983 ------TDEISYLKVGIP 994 (1055)
Q Consensus 983 ------TDv~AYr~VGIP 994 (1055)
+|+.+=+++||.
T Consensus 196 ~~d~s~~Di~~A~~aGi~ 213 (416)
T 3zvl_A 196 KKDFSCADRLFALNVGLP 213 (416)
T ss_dssp SCCSCCHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHCCCC
T ss_conf 568774469999975986
No 8
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=1.00 E-value=1 Score=52.70 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9299992678521443333445556778--87146999999999869919998133466799999998750018967999
Q 001552 852 TRIVISDVDGTITKSDVLGQFMPLVGVD--WSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD 929 (1055)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~IGkD--WTH~GVAkLYskI~~NGYkIIYLSARpI~qAd~TR~yL~~i~QdG~~LP~ 929 (1055)
-|+|+||+||||+.++.. +.+ -++. +-.+...++...++++||++..+|+|+...+...-..+ ++..
T Consensus 8 ik~i~~DlDGTL~~~~~~--~~~-~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~l--------gl~~ 76 (180)
T 1k1e_A 8 IKFVITDVDGVLTDGQLH--YDA-NGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADL--------GIKL 76 (180)
T ss_dssp CCEEEEECTTTTSCSEEE--EET-TEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHHHHHHHHHH--------TCCE
T ss_pred CEEEEEECCCCCCCCCEE--ECC-CCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHC--------CCCE
T ss_conf 719999377986988863--445-76441011643299999999889969999398968999999974--------9800
Q ss_pred CCEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCC
Q ss_conf 94552999987410034421493488999999998538999997897259974028889851989
Q 001552 930 GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1055)
Q Consensus 930 GPILLSPD~Lf~AL~REVI~kkPeeFKIacL~dIk~LFP~~~nPFyAGFGNR~TDv~AYr~VGIP 994 (1055)
. |. ..+| |...+..++..+.-..... ..+|++.+|+.+-+.+|+.
T Consensus 77 --~-------~~-------~~k~---k~~~~~~~~~~~~~~~~~~-~~vGD~~~Di~~~~~ag~~ 121 (180)
T 1k1e_A 77 --F-------FL-------GKLE---KETACFDLMKQAGVTAEQT-AYIGDDSVDLPAFAACGTS 121 (180)
T ss_dssp --E-------EE-------SCSC---HHHHHHHHHHHHTCCGGGE-EEEECSGGGHHHHHHSSEE
T ss_pred --E-------EC-------CCCC---CHHHHHHHHHHCCCCHHHE-EEECCCHHHHHHHHHCCCE
T ss_conf --0-------26-------8899---6999999999839797898-8889998799999985996
No 9
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=1.00 E-value=1 Score=52.27 Aligned_cols=141 Identities=15% Similarity=0.159 Sum_probs=77.7
Q ss_pred CCEEEEECCCCCCCCCCCCCCCC----------C---------------------C------------CCCCCHHHHHHH
Q ss_conf 92999926785214433334455----------5---------------------6------------778871469999
Q 001552 852 TRIVISDVDGTITKSDVLGQFMP----------L---------------------V------------GVDWSQTGVAHL 888 (1055)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP----------~---------------------I------------GkDWTH~GVAkL 888 (1055)
-|+||||+||||+.++..-.+.. . + ..-...+|+.++
T Consensus 4 ~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 3m1y_A 4 QKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMPLKLAKEVCESLPLFEGALEL 83 (217)
T ss_dssp CEEEEEECBTTTBSSCHHHHHHHHTTCHHHHTTCCCC----CCCHHHHHHHHHHTTTTCBHHHHHHHHTTCCBCBTHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 70899957898878404999999839648999999999747678999999999872378799999999638678778999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC--CCEECCCCCCCCC-CHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999869919998133466799999998750018967999--9455299998741-00344214934889999999985
Q 001552 889 FSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD--GPVVISPDGLFPS-LFREVIRRAPHEFKIACLEDIKA 965 (1055)
Q Consensus 889 YskI~~NGYkIIYLSARpI~qAd~TR~yL~~i~QdG~~LP~--GPILLSPD~Lf~A-L~REVI~kkPeeFKIacL~dIk~ 965 (1055)
+..++++||++..+|+.+..... .++.. .+++. ..++...+..+.. +..++...+| |-..++.+..
T Consensus 84 l~~l~~~g~~~~i~S~~~~~~~~---~~l~~-----~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~---k~~~~~~~~~ 152 (217)
T 3m1y_A 84 VSALKEKNYKVVCFSGGFDLATN---HYRDL-----LHLDAAFSNTLIVENDALNGLVTGHMMFSHS---KGEMLLVLQR 152 (217)
T ss_dssp HHHHHTTTEEEEEEEEEEHHHHH---HHHHH-----HTCSEEEEEEEEEETTEEEEEEEESCCSTTH---HHHHHHHHHH
T ss_pred HHHHHHCCCEEEEECCCCHHHHH---HHHHH-----CCCCHHCCCEEEEECCEEEEEECCCCCCCCC---HHHHHHHHHH
T ss_conf 99999879989999298166899---99998-----3960432040587578787554367778988---3999999998
Q ss_pred HCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEECCCCCEE
Q ss_conf 3899999789725997402888985198998589989999555
Q 001552 966 LFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVV 1008 (1055)
Q Consensus 966 LFP~~~nPFyAGFGNR~TDv~AYr~VGIP~sRIFiINpkGeI~ 1008 (1055)
.+.-.....+ .||++.+|+.+-+.+|++. .+|+..++.
T Consensus 153 ~~g~~~~~~i-~vGDs~~Di~~a~~aG~~~----~~~~~~~l~ 190 (217)
T 3m1y_A 153 LLNISKTNTL-VVGDGANDLSMFKHAHIKI----AFNAKEVLK 190 (217)
T ss_dssp HHTCCSTTEE-EEECSGGGHHHHTTCSEEE----EESCCHHHH
T ss_pred HCCCCHHHEE-EEECCHHHHHHHHHCCCEE----EECCCHHHH
T ss_conf 7399976889-8968888899999779758----889549999
No 10
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=1.00 E-value=1 Score=52.14 Aligned_cols=142 Identities=16% Similarity=0.162 Sum_probs=78.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCC-------------------------------------------CCCCCCCHHHHH
Q ss_conf 8992999926785214433334455-------------------------------------------567788714699
Q 001552 850 WNTRIVISDVDGTITKSDVLGQFMP-------------------------------------------LVGVDWSQTGVA 886 (1055)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP-------------------------------------------~IGkDWTH~GVA 886 (1055)
...|+||||+||||+.++..-.+.. ....-...+|+.
T Consensus 106 ~~~kaviFDlDGTLid~~~~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~~~~~~i~~~~~~~~l~pg~~ 185 (317)
T 4eze_A 106 PANGIIAFDMDSTFIAEEGVDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAVLNAVCDRMTLSPGLL 185 (317)
T ss_dssp CCSCEEEECTBTTTBSSCHHHHHHHHTTCHHHHHHHHHHHHTTSSCHHHHHHHHHHTTTTCBHHHHHHHHHTCCBCTTHH
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEECCCHH
T ss_conf 88989999189776078559999998399677999999996487788999999999846998999999983788783799
Q ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC---CCEECCCCCCC-CCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999869919998133466799999998750018967999---94552999987-4100344214934889999999
Q 001552 887 HLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD---GPVVISPDGLF-PSLFREVIRRAPHEFKIACLED 962 (1055)
Q Consensus 887 kLYskI~~NGYkIIYLSARpI~qAd~TR~yL~~i~QdG~~LP~---GPILLSPD~Lf-~AL~REVI~kkPeeFKIacL~d 962 (1055)
++...++++||++.-+|+.+...+......+ ++.. ..+.. .++.+ ..+..++..++| |-..+..
T Consensus 186 e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~l--------gl~~~f~~~l~~-~dg~~tg~i~~~~~~~kp---kp~~~~~ 253 (317)
T 4eze_A 186 TILPVIKAKGFKTAIISGGLDIFTQRLKARY--------QLDYAFSNTVEI-RDNVLTDNITLPIMNAAN---KKQTLVD 253 (317)
T ss_dssp HHHHHHHHTTCEEEEEEEEEHHHHHHHHHHH--------TCSEEEEECEEE-ETTEEEEEECSSCCCHHH---HHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHC--------CCCEEEEEEEEE-ECCEEEEEEECCCCCCCC---CHHHHHH
T ss_conf 9999999689979999185689999999984--------998589878886-688663127214678877---8999999
Q ss_pred HHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEECCCCCEE
Q ss_conf 9853899999789725997402888985198998589989999555
Q 001552 963 IKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVV 1008 (1055)
Q Consensus 963 Ik~LFP~~~nPFyAGFGNR~TDv~AYr~VGIP~sRIFiINpkGeI~ 1008 (1055)
++..+.-.....+ .+|++.+|+.+-+.+|+ -+.++++..+.
T Consensus 254 ~~~~lgv~~~~~i-~VGDs~~Di~aa~~AG~----~va~~~~~~~~ 294 (317)
T 4eze_A 254 LAARLNIATENII-ACGDGANDLPMLEHAGT----GIAWKAKPVVR 294 (317)
T ss_dssp HHHHHTCCGGGEE-EEECSGGGHHHHHHSSE----EEEESCCHHHH
T ss_pred HHHHCCCCCCEEE-EEECCHHHHHHHHHCCC----EEEECCCHHHH
T ss_conf 9998097920099-99499889999998898----49968988999
Done!