Query 001553
Match_columns 1055
No_of_seqs 481 out of 5418
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.2E-55 9.2E-60 521.9 22.3 329 1-333 306-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-47 3E-52 485.9 38.8 546 1-720 340-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.3E-32 2.8E-37 351.4 31.4 174 207-398 69-248 (968)
4 PLN00113 leucine-rich repeat r 100.0 8.1E-33 1.8E-37 353.2 29.3 154 229-399 69-225 (968)
5 KOG0618 Serine/threonine phosp 99.9 1.6E-24 3.4E-29 244.0 -1.2 481 214-949 5-488 (1081)
6 KOG4194 Membrane glycoprotein 99.9 4.6E-23 9.9E-28 220.0 5.8 152 229-397 78-232 (873)
7 PLN03210 Resistant to P. syrin 99.9 1.7E-20 3.8E-25 239.1 24.6 342 206-632 557-909 (1153)
8 KOG0472 Leucine-rich repeat pr 99.9 6.5E-25 1.4E-29 224.1 -12.5 186 208-413 46-233 (565)
9 KOG4194 Membrane glycoprotein 99.9 4.6E-22 1E-26 212.4 7.7 128 808-946 317-448 (873)
10 KOG0618 Serine/threonine phosp 99.9 1.4E-23 3E-28 236.4 -5.1 481 261-983 3-489 (1081)
11 KOG0472 Leucine-rich repeat pr 99.8 2.1E-24 4.6E-29 220.3 -14.2 154 229-402 45-199 (565)
12 KOG0444 Cytoskeletal regulator 99.8 9.4E-22 2E-26 211.0 -5.0 363 231-752 9-378 (1255)
13 KOG0444 Cytoskeletal regulator 99.8 2.3E-21 5E-26 208.0 -4.9 176 205-399 5-186 (1255)
14 PF00931 NB-ARC: NB-ARC domain 99.7 7.8E-19 1.7E-23 191.4 5.2 134 4-139 149-286 (287)
15 KOG0617 Ras suppressor protein 99.6 2E-17 4.2E-22 149.9 -5.8 165 220-404 24-191 (264)
16 KOG0617 Ras suppressor protein 99.5 1.2E-16 2.5E-21 144.9 -5.7 152 205-362 31-186 (264)
17 PRK15387 E3 ubiquitin-protein 99.4 7.5E-13 1.6E-17 156.3 13.2 235 653-981 222-456 (788)
18 KOG4237 Extracellular matrix p 99.4 4.5E-15 9.8E-20 152.7 -4.7 138 219-361 58-200 (498)
19 KOG4658 Apoptotic ATPase [Sign 99.4 1.7E-13 3.6E-18 165.6 7.4 158 220-394 514-676 (889)
20 PRK15370 E3 ubiquitin-protein 99.3 6.3E-12 1.4E-16 149.8 14.0 95 257-361 200-295 (754)
21 PRK15387 E3 ubiquitin-protein 99.3 2.8E-11 6.1E-16 143.1 19.0 157 209-403 203-359 (788)
22 KOG4341 F-box protein containi 99.3 8.6E-14 1.9E-18 144.8 -4.6 271 549-869 162-436 (483)
23 KOG4341 F-box protein containi 99.3 4.1E-14 8.8E-19 147.1 -7.4 299 551-950 138-439 (483)
24 KOG4237 Extracellular matrix p 99.3 5.2E-13 1.1E-17 137.7 -0.1 274 189-506 50-357 (498)
25 PRK15370 E3 ubiquitin-protein 99.3 3.1E-11 6.8E-16 143.9 14.3 164 207-403 178-342 (754)
26 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.4E-15 110.4 2.6 130 253-394 16-148 (175)
27 KOG0532 Leucine-rich repeat (L 99.0 3.7E-11 8.1E-16 129.9 -3.7 176 208-405 76-253 (722)
28 PF14580 LRR_9: Leucine-rich r 98.9 5.1E-10 1.1E-14 108.2 4.3 136 263-413 4-145 (175)
29 KOG0532 Leucine-rich repeat (L 98.9 8.7E-11 1.9E-15 127.1 -4.0 168 227-416 73-242 (722)
30 KOG1259 Nischarin, modulator o 98.9 2.1E-10 4.5E-15 114.1 -1.5 185 204-403 211-416 (490)
31 KOG1259 Nischarin, modulator o 98.7 1.5E-09 3.3E-14 108.1 -1.4 129 228-363 283-413 (490)
32 COG4886 Leucine-rich repeat (L 98.6 3.1E-08 6.6E-13 113.3 6.0 171 208-399 117-290 (394)
33 cd00116 LRR_RI Leucine-rich re 98.6 1.6E-08 3.4E-13 112.4 2.8 159 230-399 109-291 (319)
34 cd00116 LRR_RI Leucine-rich re 98.6 3.2E-08 7E-13 109.9 4.9 56 279-334 137-203 (319)
35 COG4886 Leucine-rich repeat (L 98.6 4.5E-08 9.9E-13 111.9 5.8 170 227-416 114-285 (394)
36 KOG3207 Beta-tubulin folding c 98.5 2.9E-08 6.3E-13 104.8 -0.2 200 206-414 120-332 (505)
37 PRK15386 type III secretion pr 98.3 1.9E-06 4.1E-11 93.8 9.3 63 855-927 48-110 (426)
38 PF13855 LRR_8: Leucine rich r 98.3 5.8E-07 1.3E-11 71.2 3.0 58 230-290 2-60 (61)
39 KOG3207 Beta-tubulin folding c 98.2 1.9E-07 4.1E-12 98.8 -0.8 181 204-399 143-339 (505)
40 PF13855 LRR_8: Leucine rich r 98.2 9.9E-07 2.2E-11 69.9 3.3 57 302-359 2-59 (61)
41 PRK15386 type III secretion pr 98.2 4.6E-06 1E-10 90.8 9.0 38 677-720 51-88 (426)
42 PLN03150 hypothetical protein; 98.2 5.4E-06 1.2E-10 99.3 9.5 105 257-362 419-528 (623)
43 KOG0531 Protein phosphatase 1, 98.1 2.9E-07 6.4E-12 105.2 -2.0 152 227-401 93-247 (414)
44 PLN03150 hypothetical protein; 98.1 5.6E-06 1.2E-10 99.2 8.7 105 280-398 419-527 (623)
45 KOG1859 Leucine-rich repeat pr 98.0 6.2E-08 1.3E-12 108.2 -9.6 180 206-403 108-296 (1096)
46 KOG1947 Leucine rich repeat pr 98.0 3.8E-07 8.3E-12 107.9 -4.7 122 676-821 186-308 (482)
47 PF12799 LRR_4: Leucine Rich r 98.0 7.3E-06 1.6E-10 59.1 3.7 40 257-296 2-41 (44)
48 KOG0531 Protein phosphatase 1, 97.9 1.1E-06 2.5E-11 100.4 -2.2 128 228-362 71-199 (414)
49 KOG2120 SCF ubiquitin ligase, 97.9 5.8E-07 1.2E-11 90.2 -4.8 184 808-1008 185-375 (419)
50 PF12799 LRR_4: Leucine Rich r 97.9 2.2E-05 4.9E-10 56.6 4.4 39 302-341 2-40 (44)
51 KOG1947 Leucine rich repeat pr 97.8 7.4E-07 1.6E-11 105.5 -6.2 66 652-717 242-308 (482)
52 KOG2120 SCF ubiquitin ligase, 97.8 1.3E-06 2.9E-11 87.7 -3.5 164 651-844 208-372 (419)
53 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.2E-10 94.9 2.2 105 227-334 146-260 (699)
54 KOG3665 ZYG-1-like serine/thre 97.7 2.9E-05 6.2E-10 92.6 4.1 132 229-362 122-263 (699)
55 KOG1909 Ran GTPase-activating 97.6 1.4E-05 3E-10 82.8 0.7 182 208-399 93-311 (382)
56 KOG1859 Leucine-rich repeat pr 97.6 1.2E-06 2.6E-11 98.2 -7.5 121 209-334 166-289 (1096)
57 KOG4579 Leucine-rich repeat (L 97.3 2.3E-05 4.9E-10 69.8 -2.7 88 254-342 51-140 (177)
58 KOG4579 Leucine-rich repeat (L 97.3 2E-05 4.4E-10 70.1 -3.1 107 210-319 30-141 (177)
59 KOG2982 Uncharacterized conser 97.2 6.3E-05 1.4E-09 76.0 -0.3 87 299-399 69-159 (418)
60 KOG1644 U2-associated snRNP A' 97.2 0.00054 1.2E-08 65.8 5.7 62 253-314 61-126 (233)
61 KOG1644 U2-associated snRNP A' 97.2 0.0007 1.5E-08 65.0 5.7 104 280-394 43-148 (233)
62 KOG1909 Ran GTPase-activating 97.0 0.00026 5.7E-09 73.6 1.2 109 252-361 181-310 (382)
63 COG5238 RNA1 Ran GTPase-activa 96.9 0.00016 3.4E-09 72.2 -0.8 92 254-346 28-141 (388)
64 KOG2982 Uncharacterized conser 96.8 0.00075 1.6E-08 68.5 2.3 103 211-314 49-159 (418)
65 KOG2739 Leucine-rich acidic nu 95.9 0.004 8.7E-08 62.8 2.0 61 254-314 63-129 (260)
66 KOG2123 Uncharacterized conser 95.9 0.00057 1.2E-08 68.6 -3.9 99 256-355 19-123 (388)
67 KOG2739 Leucine-rich acidic nu 95.5 0.007 1.5E-07 61.1 1.9 89 205-294 41-131 (260)
68 PF00560 LRR_1: Leucine Rich R 95.0 0.0092 2E-07 35.7 0.7 21 302-322 1-21 (22)
69 KOG2123 Uncharacterized conser 95.0 0.0011 2.5E-08 66.5 -5.2 83 277-361 17-100 (388)
70 PF13306 LRR_5: Leucine rich r 94.7 0.085 1.8E-06 49.1 6.8 41 246-287 25-66 (129)
71 PF00560 LRR_1: Leucine Rich R 94.7 0.011 2.3E-07 35.4 0.3 21 257-277 1-21 (22)
72 COG5238 RNA1 Ran GTPase-activa 94.4 0.035 7.6E-07 56.0 3.5 141 274-417 25-194 (388)
73 PF13306 LRR_5: Leucine rich r 94.3 0.098 2.1E-06 48.7 6.2 107 246-358 2-112 (129)
74 KOG3864 Uncharacterized conser 93.0 0.023 4.9E-07 55.1 -0.6 68 521-590 122-189 (221)
75 KOG3864 Uncharacterized conser 92.4 0.017 3.6E-07 56.0 -2.4 92 911-1012 101-192 (221)
76 PRK04841 transcriptional regul 92.3 1.3 2.9E-05 56.9 13.9 150 6-183 176-332 (903)
77 PF13504 LRR_7: Leucine rich r 92.0 0.1 2.3E-06 28.8 1.4 16 302-317 2-17 (17)
78 PF13504 LRR_7: Leucine rich r 91.0 0.14 3.1E-06 28.3 1.3 16 257-272 2-17 (17)
79 KOG0473 Leucine-rich repeat pr 91.0 0.0054 1.2E-07 60.2 -7.3 82 253-334 39-121 (326)
80 KOG0473 Leucine-rich repeat pr 89.7 0.012 2.6E-07 57.9 -6.2 83 227-313 40-123 (326)
81 smart00370 LRR Leucine-rich re 85.8 0.65 1.4E-05 28.9 2.0 19 301-319 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 85.8 0.65 1.4E-05 28.9 2.0 19 301-319 2-20 (26)
83 smart00370 LRR Leucine-rich re 83.0 1.1 2.4E-05 27.9 2.2 22 323-345 1-22 (26)
84 smart00369 LRR_TYP Leucine-ric 83.0 1.1 2.4E-05 27.9 2.2 22 323-345 1-22 (26)
85 smart00367 LRR_CC Leucine-rich 79.5 1.1 2.4E-05 27.9 1.2 16 995-1010 1-16 (26)
86 smart00367 LRR_CC Leucine-rich 73.9 1.5 3.2E-05 27.4 0.7 18 677-694 1-18 (26)
87 PRK00080 ruvB Holliday junctio 71.2 13 0.00028 41.0 7.9 102 4-120 172-276 (328)
88 TIGR03015 pepcterm_ATPase puta 70.6 17 0.00038 38.6 8.6 55 5-59 185-242 (269)
89 TIGR00635 ruvB Holliday juncti 67.5 42 0.0009 36.6 10.9 51 4-57 151-203 (305)
90 smart00365 LRR_SD22 Leucine-ri 61.9 6.8 0.00015 24.5 1.8 13 280-292 3-15 (26)
91 smart00364 LRR_BAC Leucine-ric 54.3 8.5 0.00018 24.0 1.3 17 257-273 3-19 (26)
92 PF13516 LRR_6: Leucine Rich r 40.1 13 0.00028 22.5 0.6 13 301-313 2-14 (24)
93 PF14516 AAA_35: AAA-like doma 39.2 1.2E+02 0.0026 33.5 8.4 56 2-62 191-246 (331)
94 smart00368 LRR_RI Leucine rich 34.9 30 0.00066 22.0 1.7 13 257-269 3-15 (28)
95 KOG4308 LRR-containing protein 28.7 1.7 3.6E-05 50.2 -8.5 15 254-268 170-184 (478)
96 COG2909 MalT ATP-dependent tra 25.0 1E+02 0.0023 37.6 5.1 143 12-183 194-338 (894)
97 PRK00411 cdc6 cell division co 23.3 5.5E+02 0.012 29.0 10.8 92 5-112 200-303 (394)
98 KOG4308 LRR-containing protein 22.4 5.7 0.00012 45.9 -5.7 135 256-401 144-305 (478)
99 cd04440 DEP_2_P-Rex DEP (Dishe 22.1 1.7E+02 0.0036 25.2 4.4 44 115-164 33-76 (93)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-55 Score=521.88 Aligned_cols=329 Identities=31% Similarity=0.478 Sum_probs=264.3
Q ss_pred CCCcceEecCCCCHHHHHHHHHHHhCC--CCCChhHHHHHHHHHHHhCCCchhHHHHHHHHcCCCChHHHHHHHHHhcCC
Q 001553 1 MGSEANFSIEILNEEEAWRLFEVKLGN--DDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMP 78 (1055)
Q Consensus 1 ~~~~~~~~l~~L~~~~s~~Lf~~~a~~--~~~~~~l~~~~~~i~~~c~GlPLa~~~ig~~L~~~~~~~~W~~~l~~~~~~ 78 (1055)
||+...+++++|+++|||+||+++||. ....+.++++|++||++|+|+|||+++||+.|+.|++.++|+++++.+...
T Consensus 306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS 385 (889)
T ss_pred ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence 788899999999999999999999963 334455999999999999999999999999999999999999999988633
Q ss_pred CCCCcccchH-HHHHHHHHHHhcCCchhHHHHHHhhcCCC-CCcchH-HHHHHHHhhccccccc-HHHHHHHHHHHHHHH
Q 001553 79 TENNFHRELG-KAYTAIKLSYDALKGEQLKKIFQLCSLMP-KSFFAS-DLFKYCIGLGIFRGID-MEDARNKLYTLVHEL 154 (1055)
Q Consensus 79 ~~~~~~~~~~-~i~~~L~~Sy~~L~~~~lk~cfly~~~fp-~~~i~~-~li~~wia~g~i~~~~-~e~~~~~~~~~~~~L 154 (1055)
.... .++++ .|+++|++|||+||.+ +|.||+|||+|| +|+|.+ +||.+|||||||.+.+ .+.+.+.+++|+.+|
T Consensus 386 ~~~~-~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 386 LAAD-FSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccCC-CCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 2222 23444 4999999999999965 999999999999 599986 9999999999999855 777888899999999
Q ss_pred HhhcccccCC---CcCeEehhHHHHHHHHHHHc-----ccceEEEEecCCCCCCCCccccCCceEEEeecCCCCCCCCCC
Q 001553 155 KDSCLLLEGY---SCREFSMHDVVHDVAILIAC-----GEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL 226 (1055)
Q Consensus 155 ~~~sl~~~~~---~~~~~~mHdl~~dla~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~ 226 (1055)
+.++|++..+ ....|+|||+|||||.++++ +|.+++ ..+.+..+.+....+..+|++++.++.+..++...
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv-~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIV-SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEE-ECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 9999998764 44789999999999999999 666333 22234444555556788999999999999999998
Q ss_pred CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCC-CCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCCCCC
Q 001553 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNM-QLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLE 304 (1055)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~ 304 (1055)
.+++|++|.+.+|.. ....++..+|..+++||||||++| .+.++|++|++|.|||||+++++.++.+ .++++|+.|+
T Consensus 543 ~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 899999999999863 112788889999999999999976 5678999999999999988888876655 5555555555
Q ss_pred EEEeeCCC-CcccchhhcCCCCCcEEeccc
Q 001553 305 ILSLIESD-IVEFPEELGKLTKLRLLDLTN 333 (1055)
Q Consensus 305 ~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~ 333 (1055)
+|++..+. +..+|..+..|.+||+|.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 55555542 223333334455555555444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-47 Score=485.90 Aligned_cols=546 Identities=19% Similarity=0.229 Sum_probs=337.6
Q ss_pred CCCcceEecCCCCHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHHhCCCchhHHHHHHHHcCCCChHHHHHHHHHhcCCC
Q 001553 1 MGSEANFSIEILNEEEAWRLFEVKLG-NDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPT 79 (1055)
Q Consensus 1 ~~~~~~~~l~~L~~~~s~~Lf~~~a~-~~~~~~~l~~~~~~i~~~c~GlPLa~~~ig~~L~~~~~~~~W~~~l~~~~~~~ 79 (1055)
+|++++|+++.|+++|||+||+++|+ ...+++++++++++||++|+|+|||++++|+.|+++ +.++|++++++++
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~--- 415 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLR--- 415 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHH---
Confidence 46789999999999999999999995 455677899999999999999999999999999998 8899999999986
Q ss_pred CCCcccchHHHHHHHHHHHhcCCchhHHHHHHhhcCCCCCcchHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhcc
Q 001553 80 ENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCL 159 (1055)
Q Consensus 80 ~~~~~~~~~~i~~~L~~Sy~~L~~~~lk~cfly~~~fp~~~i~~~li~~wia~g~i~~~~~e~~~~~~~~~~~~L~~~sl 159 (1055)
. .. ..+|.++|++||++|+.++.|.||+|||+||.+. ..+.|..|.|.+.+... . -++.|+++||
T Consensus 416 -~-~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~-~~~~v~~~l~~~~~~~~-------~---~l~~L~~ksL 480 (1153)
T PLN03210 416 -N-GL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGE-KVNDIKLLLANSDLDVN-------I---GLKNLVDKSL 480 (1153)
T ss_pred -h-Cc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCC-CHHHHHHHHHhcCCCch-------h---ChHHHHhcCC
Confidence 1 11 2359999999999998743699999999998532 22557778777655321 1 1899999999
Q ss_pred cccCCCcCeEehhHHHHHHHHHHHcccceEEEEecCCCCCCCCc---------cccCCceEEEeecCCCCCCCC----CC
Q 001553 160 LLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDE---------DALKKCYAISWIDSSGGELPE----GL 226 (1055)
Q Consensus 160 ~~~~~~~~~~~mHdl~~dla~~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~~~l~l~~~~~~~l~~----~~ 226 (1055)
++.. .++++|||++|+||+++++++... .+.+...|... ...++++.+++....+.++.- ..
T Consensus 481 i~~~--~~~~~MHdLl~~~~r~i~~~~~~~---~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 481 IHVR--EDIVEMHSLLQEMGKEIVRAQSNE---PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred EEEc--CCeEEhhhHHHHHHHHHHHhhcCC---CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 9764 357999999999999999876310 11111112111 112355666655444322211 11
Q ss_pred CCCCccEEEccCCCCC----CCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCC
Q 001553 227 ECPQLELLLLSSEHSS----VDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLK 301 (1055)
Q Consensus 227 ~~~~Lr~L~l~~~~~~----~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~ 301 (1055)
++++|+.|.+..+... ....+|..+..-...||+|++.++.+..+|..| ...+|+.|+++++.+..+ .++..+.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 4455555554332110 001234333222234555555555555555444 234555555555555444 4444555
Q ss_pred CCCEEEeeCC-CCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccccccCcc
Q 001553 302 NLEILSLIES-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLD 380 (1055)
Q Consensus 302 ~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1055)
+|++|+++++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|++|++++|.... ..+.
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~-------------~Lp~ 699 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLE-------------ILPT 699 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcC-------------ccCC
Confidence 5555555544 233444 2444555555555555444445443 4555555555555443221 1111
Q ss_pred cCCCCCCCCEEEeecCCCCCCCcccccccccEEEEEEcCCCCCCCcccccccccccccchhhcchhhhheeeeecccccc
Q 001553 381 ELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTI 460 (1055)
Q Consensus 381 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~l~~~~i 460 (1055)
.+ ++++|+.|+++++
T Consensus 700 ~i-~l~sL~~L~Lsgc---------------------------------------------------------------- 714 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGC---------------------------------------------------------------- 714 (1153)
T ss_pred cC-CCCCCCEEeCCCC----------------------------------------------------------------
Confidence 11 3444444444433
Q ss_pred hhhcccccccEEEeeeccccCcchhcccccccccCcCcEEEeccCCCCeeeecCCCccCCcccccccccccccccccccc
Q 001553 461 CLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRI 540 (1055)
Q Consensus 461 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~ 540 (1055)
..++... ...++|++|++.++. ++.+ +....+++|+.|.+.++....-+
T Consensus 715 -------------------~~L~~~p-----~~~~nL~~L~L~~n~-i~~l------P~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 715 -------------------SRLKSFP-----DISTNISWLDLDETA-IEEF------PSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred -------------------CCccccc-----cccCCcCeeecCCCc-cccc------cccccccccccccccccchhhcc
Confidence 2111110 011234444443322 1111 11112344444444433211100
Q ss_pred c----cccCCchhccccceeEEccCCCcccccchhhhhcCCcccEEeeccccchhHhhhccCCCCccccCCCCccceecc
Q 001553 541 C----VDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFA 616 (1055)
Q Consensus 541 ~----~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1055)
. ........+++|+.|.+.+|+.+..+|. .+.++++|+.|++++|..++.+|... .++
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~~----------------~L~ 825 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPTGI----------------NLE 825 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCCC----------------Ccc
Confidence 0 0000112357899999999988888765 57789999999999999888776532 588
Q ss_pred ccceeecCCCCcccccccCCCCCCCCCCCcCCccccCcccccccccccccccccCCCCccCCcccEEEEecCCccceecc
Q 001553 617 QIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFY 696 (1055)
Q Consensus 617 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~ 696 (1055)
+|+.|++++|..+..++. ..++|+.|++++|.++.+.... ..+++|+.|++++|++++.++.
T Consensus 826 sL~~L~Ls~c~~L~~~p~----------------~~~nL~~L~Ls~n~i~~iP~si--~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPD----------------ISTNISDLNLSRTGIEEVPWWI--EKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred ccCEEECCCCCccccccc----------------cccccCEeECCCCCCccChHHH--hcCCCCCEEECCCCCCcCccCc
Confidence 999999999998887542 1468999999999887653221 3688999999999999998765
Q ss_pred cchhhhccccCeEEEeccccccee
Q 001553 697 ASMIKSLEQLQHLEIRNCTGLQVI 720 (1055)
Q Consensus 697 ~~~~~~l~~L~~L~i~~c~~l~~i 720 (1055)
. ...+++|+.+++++|.++..+
T Consensus 888 ~--~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 888 N--ISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred c--cccccCCCeeecCCCcccccc
Confidence 3 467899999999999988654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-32 Score=351.43 Aligned_cols=174 Identities=24% Similarity=0.347 Sum_probs=137.2
Q ss_pred CCceEEEeecCCCCC-CCCCC-CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCC-cCCcccccCcCCcE
Q 001553 207 KKCYAISWIDSSGGE-LPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSIDLLVNLQT 283 (1055)
Q Consensus 207 ~~~~~l~l~~~~~~~-l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~ 283 (1055)
.+++.+++.++.+.. ++..+ .+++|++|++++|.+. +.+|.++|..+++||+|++++|.+. .+|. +.+.+|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 468888888887643 33333 7889999999988765 3788888888999999999998886 3554 56788999
Q ss_pred EEccCCCCC-CC-cccCCCCCCCEEEeeCCCCc-ccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCc
Q 001553 284 LCLDYSTLG-DI-TIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCF 360 (1055)
Q Consensus 284 L~L~~~~i~-~l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 360 (1055)
|++++|.+. .+ ..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc
Confidence 999999876 34 67889999999999998776 67888999999999999988444456665 8889999999998887
Q ss_pred ccccccccCCcccccccCcccCCCCCCCCEEEeecCCC
Q 001553 361 VEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND 398 (1055)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (1055)
+.. ..+..++++++|++|++++|..
T Consensus 224 l~~-------------~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 224 LSG-------------EIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred cCC-------------cCChhHhcCCCCCEEECcCcee
Confidence 763 5567788888899998887764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.1e-33 Score=353.24 Aligned_cols=154 Identities=23% Similarity=0.281 Sum_probs=129.8
Q ss_pred CCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCC-cCCcccc-cCcCCcEEEccCCCCCCCcccCCCCCCCEE
Q 001553 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSID-LLVNLQTLCLDYSTLGDITIIGKLKNLEIL 306 (1055)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L 306 (1055)
.+++.|+++++.+.. .++ ..|..+++|++|++++|.+. .+|..+. .+.+||+|++++|.+...-..+.+.+|++|
T Consensus 69 ~~v~~L~L~~~~i~~--~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISG--KIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccc--cCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEE
Confidence 579999999987652 444 45689999999999999997 6887765 999999999999998754334679999999
Q ss_pred EeeCCCCc-ccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCCC
Q 001553 307 SLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL 385 (1055)
Q Consensus 307 ~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (1055)
++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.. ..+..++++
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~-------------~~p~~l~~l 211 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVG-------------QIPRELGQM 211 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcC-------------cCChHHcCc
Confidence 99999887 78999999999999999999444567765 8999999999999998763 567788999
Q ss_pred CCCCEEEeecCCCC
Q 001553 386 PRLTTLEIAVENDN 399 (1055)
Q Consensus 386 ~~L~~L~l~~~~~~ 399 (1055)
++|+.|++++|...
T Consensus 212 ~~L~~L~L~~n~l~ 225 (968)
T PLN00113 212 KSLKWIYLGYNNLS 225 (968)
T ss_pred CCccEEECcCCccC
Confidence 99999999887643
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=1.6e-24 Score=244.05 Aligned_cols=481 Identities=22% Similarity=0.235 Sum_probs=283.9
Q ss_pred eecCCCCCCCCCC-CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCC
Q 001553 214 WIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLG 292 (1055)
Q Consensus 214 l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~ 292 (1055)
.+.+..+-+|..+ ....+..|.+..|... ..|-.+..+.-+|+.||+++|.+..+|..+..+.+|+.|+++.|.|+
T Consensus 5 ~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l---~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 5 ASDEQLELIPEQILNNEALQILNLRRNSLL---SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cccccCcccchhhccHHHHHhhhccccccc---cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 3334444455444 2233666666666443 44555557777799999999999999999999999999999999999
Q ss_pred CC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCc
Q 001553 293 DI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSS 371 (1055)
Q Consensus 293 ~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 371 (1055)
.. .+++++.+|++|+|.+|.+..+|.++..+++|++|++++| .+..+|.- +..++.+..+..++|...
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~-i~~lt~~~~~~~s~N~~~--------- 150 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLV-IEVLTAEEELAASNNEKI--------- 150 (1081)
T ss_pred hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchh-HHhhhHHHHHhhhcchhh---------
Confidence 87 8899999999999999999999999999999999999999 88888875 888888888888887221
Q ss_pred ccccccCcccCCCCCCCCEEEeecCCCC-CCCcccccccccEEEEEEcCCCCCCCcccccccccccccchhhcchhhhhe
Q 001553 372 SKKSKASLDELMPLPRLTTLEIAVENDN-ALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRM 450 (1055)
Q Consensus 372 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 450 (1055)
..++... ++.+++..+... .++.+ ..++++
T Consensus 151 --------~~lg~~~-ik~~~l~~n~l~~~~~~~--i~~l~~-------------------------------------- 181 (1081)
T KOG0618|consen 151 --------QRLGQTS-IKKLDLRLNVLGGSFLID--IYNLTH-------------------------------------- 181 (1081)
T ss_pred --------hhhcccc-chhhhhhhhhcccchhcc--hhhhhe--------------------------------------
Confidence 2222222 445555444321 11111 111111
Q ss_pred eeeecccccchhhcccccccEEEeeeccccCcchhcccccccccCcCcEEEeccCCCCeeeecCCCccCCcccccccccc
Q 001553 451 LKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLS 530 (1055)
Q Consensus 451 l~l~l~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~ 530 (1055)
.+.++.+.+...... .+++|+.|....... ..+ ...-|+|+.|+
T Consensus 182 -~ldLr~N~~~~~dls--------------------------~~~~l~~l~c~rn~l-s~l--------~~~g~~l~~L~ 225 (1081)
T KOG0618|consen 182 -QLDLRYNEMEVLDLS--------------------------NLANLEVLHCERNQL-SEL--------EISGPSLTALY 225 (1081)
T ss_pred -eeecccchhhhhhhh--------------------------hccchhhhhhhhccc-ceE--------EecCcchheee
Confidence 111111111000011 122222222221110 000 01123344444
Q ss_pred ccccccccccccccCCchhccccceeEEccCCCcccccchhhhhcCCcccEEeeccccchhHhhhccCCCCccccCCCCc
Q 001553 531 LQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAI 610 (1055)
Q Consensus 531 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 610 (1055)
...++-.+ . .....-.+|+++.++.. ++..+| .++..+++|+.+.+.. +.+..++...
T Consensus 226 a~~n~l~~-~----~~~p~p~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~-N~l~~lp~ri------------- 283 (1081)
T KOG0618|consen 226 ADHNPLTT-L----DVHPVPLNLQYLDISHN-NLSNLP--EWIGACANLEALNANH-NRLVALPLRI------------- 283 (1081)
T ss_pred eccCccee-e----ccccccccceeeecchh-hhhcch--HHHHhcccceEecccc-hhHHhhHHHH-------------
Confidence 44433221 0 01112244555555543 344444 3555555666655554 2333333221
Q ss_pred cceeccccceeecCCCCcccccccCCCCCCCCCCCcCCccccCcccccccccccccccccCCCCccCCcccEEEEecCCc
Q 001553 611 ENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQK 690 (1055)
Q Consensus 611 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~ 690 (1055)
....+|+.|.+..|.+..+
T Consensus 284 ---------------------------------------~~~~~L~~l~~~~nel~yi---------------------- 302 (1081)
T KOG0618|consen 284 ---------------------------------------SRITSLVSLSAAYNELEYI---------------------- 302 (1081)
T ss_pred ---------------------------------------hhhhhHHHHHhhhhhhhhC----------------------
Confidence 1123344444444433333
Q ss_pred cceecccchhhhccccCeEEEecccccceeccccccCCCCCccccccccccccccCCcccccCCCCCCCCCCCccEEEEc
Q 001553 691 LKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVF 770 (1055)
Q Consensus 691 L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 770 (1055)
++. ...+.+|++|++..+. +.+++... +.. ...+|+.|..+
T Consensus 303 ----p~~--le~~~sL~tLdL~~N~-L~~lp~~~-------------l~v-------------------~~~~l~~ln~s 343 (1081)
T KOG0618|consen 303 ----PPF--LEGLKSLRTLDLQSNN-LPSLPDNF-------------LAV-------------------LNASLNTLNVS 343 (1081)
T ss_pred ----CCc--ccccceeeeeeehhcc-ccccchHH-------------Hhh-------------------hhHHHHHHhhh
Confidence 221 1234455555554443 22221100 000 00012222221
Q ss_pred cCCCccccccccccccccccccccCCCCCccccccccCCcceeeeccccccccccCCCCCCccCCCccEEEEecCCCCcc
Q 001553 771 SCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASV 850 (1055)
Q Consensus 771 ~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~sL~~L~l~~~~l~~~ 850 (1055)
|.++...|. ..+...+.|+.|++.+|..+...-.. +.++..|+.|++++|.+.++
T Consensus 344 -~n~l~~lp~---------------------~~e~~~~~Lq~LylanN~Ltd~c~p~---l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 344 -SNKLSTLPS---------------------YEENNHAALQELYLANNHLTDSCFPV---LVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred -hcccccccc---------------------ccchhhHHHHHHHHhcCcccccchhh---hccccceeeeeecccccccC
Confidence 222322220 01234577888888888877533222 56889999999999999999
Q ss_pred cHHHHHHhcCCceEEeecccceeeeccCccccccceEEccccccccccccCCcccCcccccccCEEEEccCCCcccccch
Q 001553 851 PIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKVDSCQKLMNLVTP 930 (1055)
Q Consensus 851 ~~~~l~~l~~L~~L~l~~c~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~ 930 (1055)
|...+.++..||+|+++||.++.++.....+..|++|...+ +.|..+ |+ +..++.|+.++++ |++|+....+
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~f----Pe--~~~l~qL~~lDlS-~N~L~~~~l~ 470 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSF----PE--LAQLPQLKVLDLS-CNNLSEVTLP 470 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeec----hh--hhhcCcceEEecc-cchhhhhhhh
Confidence 99999999999999999999999988777788999988755 557777 54 7788999999998 7888877544
Q ss_pred hhhcCcccccEEEEecccc
Q 001553 931 SGAKSLVRLESLTIYGCSA 949 (1055)
Q Consensus 931 ~~~~~l~sL~~L~i~~c~~ 949 (1055)
..... +.|++|++++...
T Consensus 471 ~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 471 EALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhCCC-cccceeeccCCcc
Confidence 43222 7899999988775
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.6e-23 Score=220.01 Aligned_cols=152 Identities=22% Similarity=0.286 Sum_probs=86.9
Q ss_pred CCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC--cccCCCCCCCEE
Q 001553 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEIL 306 (1055)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L 306 (1055)
+..++|++++|... .+.-..|.++.+|+.+++..|.+..+|.......||+.|+|.+|.|..+ +.+.-+.-||.|
T Consensus 78 ~~t~~LdlsnNkl~---~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLS---HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccc---cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 44556666666555 4544555666666666666666666666555555666666666666655 456666666666
Q ss_pred EeeCCCCcccc-hhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCCC
Q 001553 307 SLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL 385 (1055)
Q Consensus 307 ~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (1055)
||+.|.++.+| ..+..=.++++|+|++| .++.+..+.+..+.+|-+|.++.|.++. .-+..++++
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNritt-------------Lp~r~Fk~L 220 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITT-------------LPQRSFKRL 220 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccc-------------cCHHHhhhc
Confidence 66666665555 23444455666666666 5555555445555555555555555542 223344455
Q ss_pred CCCCEEEeecCC
Q 001553 386 PRLTTLEIAVEN 397 (1055)
Q Consensus 386 ~~L~~L~l~~~~ 397 (1055)
++|+.|++..|.
T Consensus 221 ~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 221 PKLESLDLNRNR 232 (873)
T ss_pred chhhhhhccccc
Confidence 555555554443
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.7e-20 Score=239.08 Aligned_cols=342 Identities=18% Similarity=0.246 Sum_probs=250.4
Q ss_pred cCCceEEEeecCCC-------CCCCCCC-C-CCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccc
Q 001553 206 LKKCYAISWIDSSG-------GELPEGL-E-CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSID 276 (1055)
Q Consensus 206 ~~~~~~l~l~~~~~-------~~l~~~~-~-~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~ 276 (1055)
+..++.+.+..+.. ..+|..+ . ..+||.|.+.++... .+|..+ .+.+|+.|++.++.+..+|.++.
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~---~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR---CMPSNF--RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC---CCCCcC--CccCCcEEECcCccccccccccc
Confidence 55677777755421 2344444 2 357999999998766 788765 57999999999999999999999
Q ss_pred cCcCCcEEEccCCC-CCCCcccCCCCCCCEEEeeCC-CCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEE
Q 001553 277 LLVNLQTLCLDYST-LGDITIIGKLKNLEILSLIES-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEEL 354 (1055)
Q Consensus 277 ~L~~Lr~L~L~~~~-i~~l~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L 354 (1055)
.+.+|++|+++++. +..++.++.+.+|++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|++|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 99999999999875 677788999999999999998 67799999999999999999999899999985 3 89999999
Q ss_pred EcccCcccccccccCCcccccccCcccCCCCCCCCEEEeecCCCCCCCcccccccccEEEEEEcCCCCCCCccccccccc
Q 001553 355 YMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFR 434 (1055)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~~~~~ 434 (1055)
++++|.... ..+. ...+|+.|++.++.+..+|....+.+|+.|.+...... .-|.
T Consensus 710 ~Lsgc~~L~-------------~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~--------~l~~- 764 (1153)
T PLN03210 710 NLSGCSRLK-------------SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE--------KLWE- 764 (1153)
T ss_pred eCCCCCCcc-------------cccc---ccCCcCeeecCCCccccccccccccccccccccccchh--------hccc-
Confidence 999986542 1111 14679999999999888888766777776654210000 0000
Q ss_pred ccccchhhcchhhhheeeeecccccchhhcccccccEEEeeeccccCcchhcccccccccCcCcEEEeccCCCCeeeecC
Q 001553 435 ISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDS 514 (1055)
Q Consensus 435 ~~~~~~~~~~~~~l~~l~l~l~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~ 514 (1055)
....+........++|+.|+++++.....++..+. .+++|+.|++++|..++.++.
T Consensus 765 ---------------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~--~L~~L~~L~Ls~C~~L~~LP~- 820 (1153)
T PLN03210 765 ---------------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ--NLHKLEHLEIENCINLETLPT- 820 (1153)
T ss_pred ---------------------cccccchhhhhccccchheeCCCCCCccccChhhh--CCCCCCEEECCCCCCcCeeCC-
Confidence 00000000012236788888888766665555443 678888888888887766532
Q ss_pred CCccCCccccccccccccccccccccccccCCchhccccceeEEccCCCcccccchhhhhcCCcccEEeeccccchhHhh
Q 001553 515 REIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIF 594 (1055)
Q Consensus 515 ~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~ 594 (1055)
...+++|+.|.+++|..++.++. ..++|+.|++.++ .++.+|. .+..+++|+.|++++|+++..++
T Consensus 821 -----~~~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 821 -----GINLESLESLDLSGCSRLRTFPD------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred -----CCCccccCEEECCCCCccccccc------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccC
Confidence 12578888888888888766532 2467888888775 5666654 56778888888888888888776
Q ss_pred hccCCCCccccCCCCccceeccccceeecCCCCccccc
Q 001553 595 AIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSF 632 (1055)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 632 (1055)
... ..+++|+.+.+++|++|+.+
T Consensus 887 ~~~---------------~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 887 LNI---------------SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccc---------------ccccCCCeeecCCCcccccc
Confidence 533 35778888888888888764
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=6.5e-25 Score=224.06 Aligned_cols=186 Identities=27% Similarity=0.323 Sum_probs=161.7
Q ss_pred CceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEc
Q 001553 208 KCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL 286 (1055)
Q Consensus 208 ~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L 286 (1055)
.+..+.+.+|.+..+.+.. .+..+.+|.++.|... .+|+++ +.+..+..|+.++|.+..+|+.++.+..|+.|+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~---~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS---QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhh---hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 3456777888887777666 7889999999999877 899888 8999999999999999999999999999999999
Q ss_pred cCCCCCCC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccc
Q 001553 287 DYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV 365 (1055)
Q Consensus 287 ~~~~i~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 365 (1055)
++|.+.++ ++|+.+..|..|+..+|++..+|.+++++.+|..|++.+| +++.+|++.+. ++.|++|+...|.+.
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE--- 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh---
Confidence 99999988 9999999999999999999999999999999999999999 89999998565 999999998777664
Q ss_pred cccCCcccccccCcccCCCCCCCCEEEeecCCCCCCCcccccccccEE
Q 001553 366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERF 413 (1055)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~l 413 (1055)
..+.+++.+..|..|++..|.+..+|+.-++..|+.+
T Consensus 197 -----------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~El 233 (565)
T KOG0472|consen 197 -----------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKEL 233 (565)
T ss_pred -----------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHH
Confidence 6789999999999999999998888743244444433
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=4.6e-22 Score=212.40 Aligned_cols=128 Identities=22% Similarity=0.316 Sum_probs=82.4
Q ss_pred CCcceeeeccccccccccCCCCCCccCCCccEEEEecCCCCcccHHHHHHhcCCceEEeecccceeeeccC----ccccc
Q 001553 808 PNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNG----GQVHL 883 (1055)
Q Consensus 808 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~sL~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~c~l~~~~~~~----~~l~~ 883 (1055)
++|++|++++|.+....++. +..+..|++|.+++|.++.+..+.|.++.+|++|++++|.+.....+. ..+++
T Consensus 317 qkL~~LdLs~N~i~~l~~~s---f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGS---FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred ccceeEeccccccccCChhH---HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 44555555555555444443 235677788888888888888888888888888888888554443332 12778
Q ss_pred cceEEccccccccccccCCcccCcccccccCEEEEccCCCcccccchhhhcCcccccEEEEec
Q 001553 884 IKKLELICLNDLEYLWIPNSKMGDSILQNLEILKVDSCQKLMNLVTPSGAKSLVRLESLTIYG 946 (1055)
Q Consensus 884 L~~L~l~~c~~L~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~ 946 (1055)
|++|.+.+ ++++++ |...+..+.+|++|++.+.. +.++- +..+..+ .|++|.+..
T Consensus 394 LrkL~l~g-Nqlk~I----~krAfsgl~~LE~LdL~~Na-iaSIq-~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSI----PKRAFSGLEALEHLDLGDNA-IASIQ-PNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhheeecC-ceeeec----chhhhccCcccceecCCCCc-ceeec-ccccccc-hhhhhhhcc
Confidence 88888877 667777 43367778888888887744 44442 3344444 677776643
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-23 Score=236.41 Aligned_cols=481 Identities=20% Similarity=0.255 Sum_probs=297.6
Q ss_pred EEccCCCCCcCCcccccCcCCcEEEccCCCCCC-C-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCC
Q 001553 261 VDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLK 338 (1055)
Q Consensus 261 L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~ 338 (1055)
+|+++..++.+|..+..-.++..|+++.|.+.. + +.+.+-.+|+.||+++|.+...|..|..+.+|+.|+++.| .+.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHh
Confidence 466667777777776666667788888776443 2 5666666688888888888888888888888888888888 788
Q ss_pred CcChhhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCCCCCCCEEEeecCCCCCCCccc-ccccccEEEEEE
Q 001553 339 VIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRELERFKILI 417 (1055)
Q Consensus 339 ~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~l~l~~ 417 (1055)
.+|.+ ++++.+|+.|.+.+|.+. ..+.++..+++|+.|++++|....+|.-+ .+..++.+
T Consensus 82 ~vp~s-~~~~~~l~~lnL~~n~l~--------------~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~---- 142 (1081)
T KOG0618|consen 82 SVPSS-CSNMRNLQYLNLKNNRLQ--------------SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEEL---- 142 (1081)
T ss_pred hCchh-hhhhhcchhheeccchhh--------------cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHH----
Confidence 88865 788888888888877665 56777888888888888888777666532 11111100
Q ss_pred cCCCCCCCcccccccccccccchhhcchhhhheeeeecccccchhhcccccccEEEeeeccccCcchhcccccccccCcC
Q 001553 418 GDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQL 497 (1055)
Q Consensus 418 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~l~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L 497 (1055)
..++... ...++ -...
T Consensus 143 ---------------------------------------------------------~~s~N~~----~~~lg---~~~i 158 (1081)
T KOG0618|consen 143 ---------------------------------------------------------AASNNEK----IQRLG---QTSI 158 (1081)
T ss_pred ---------------------------------------------------------hhhcchh----hhhhc---cccc
Confidence 0000000 00000 0012
Q ss_pred cEEEeccCCCCeeeecCCCccCCccccccccccccccccccccccccCCchhccccc-eeEEccCCCcccccchhhhhcC
Q 001553 498 KHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELR-TMKVENCDELSNIFVLSTTKCL 576 (1055)
Q Consensus 498 ~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~l~~~~~~~~l 576 (1055)
+.+++.....-..+ ..+ ..+++ .|++.... +..+ ....+
T Consensus 159 k~~~l~~n~l~~~~-----~~~------------------------------i~~l~~~ldLr~N~-~~~~----dls~~ 198 (1081)
T KOG0618|consen 159 KKLDLRLNVLGGSF-----LID------------------------------IYNLTHQLDLRYNE-MEVL----DLSNL 198 (1081)
T ss_pred hhhhhhhhhcccch-----hcc------------------------------hhhhheeeecccch-hhhh----hhhhc
Confidence 22222221100000 000 01111 13332221 0000 11112
Q ss_pred CcccEEeeccccchhHhhhccCCCCccccCCCCccceeccccceeecCCCCcccccccCCCCCCCCCCCcCCccccCccc
Q 001553 577 PSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLE 656 (1055)
Q Consensus 577 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~L~ 656 (1055)
+.|+.|.... +. |.+++++ .++|+
T Consensus 199 ~~l~~l~c~r-n~----------------------------ls~l~~~---------------------------g~~l~ 222 (1081)
T KOG0618|consen 199 ANLEVLHCER-NQ----------------------------LSELEIS---------------------------GPSLT 222 (1081)
T ss_pred cchhhhhhhh-cc----------------------------cceEEec---------------------------Ccchh
Confidence 2222222211 11 1111111 35566
Q ss_pred ccccccccccccccCCCCccCCcccEEEEecCCccceecccchhhhccccCeEEEecccccceeccccccCCCCCccccc
Q 001553 657 ALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFR 736 (1055)
Q Consensus 657 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~ 736 (1055)
.|+.++|.++.......| .+|++++|+. .++..++ ++...+.+|+.+++.++. +..++. ......
T Consensus 223 ~L~a~~n~l~~~~~~p~p---~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~--------ri~~~~ 287 (1081)
T KOG0618|consen 223 ALYADHNPLTTLDVHPVP---LNLQYLDISH-NNLSNLP--EWIGACANLEALNANHNR-LVALPL--------RISRIT 287 (1081)
T ss_pred eeeeccCcceeecccccc---ccceeeecch-hhhhcch--HHHHhcccceEecccchh-HHhhHH--------HHhhhh
Confidence 666666655544333333 5678888877 4566654 566778888888888766 444433 223455
Q ss_pred cccccccccCCcccccCCCCCCCCCCCccEEEEccCCCccccccccccccccccccccCCCCCccccccccCCcceeeec
Q 001553 737 RVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLS 816 (1055)
Q Consensus 737 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 816 (1055)
+|+.|.+.+| .++.++.... .+.+|++|++... +|.++|.-.. .....+|+.|+.+
T Consensus 288 ~L~~l~~~~n-el~yip~~le--~~~sL~tLdL~~N-~L~~lp~~~l--------------------~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 288 SLVSLSAAYN-ELEYIPPFLE--GLKSLRTLDLQSN-NLPSLPDNFL--------------------AVLNASLNTLNVS 343 (1081)
T ss_pred hHHHHHhhhh-hhhhCCCccc--ccceeeeeeehhc-cccccchHHH--------------------hhhhHHHHHHhhh
Confidence 6777766655 3444444333 5889999999874 6777743111 1112336666666
Q ss_pred cccccccccCCCCCCccCCCccEEEEecCCCCcccHHHHHHhcCCceEEeecccceeeeccC-ccccccceEEccccccc
Q 001553 817 IKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNG-GQVHLIKKLELICLNDL 895 (1055)
Q Consensus 817 ~~~~~~~~~~~~~~~~~l~sL~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~c~l~~~~~~~-~~l~~L~~L~l~~c~~L 895 (1055)
.+.......-+ ....+.|+.|++.+|.++.--...+.+...|+.|++++|.+.+++... ..+..|+.|.+++ ++|
T Consensus 344 ~n~l~~lp~~~---e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL 419 (1081)
T KOG0618|consen 344 SNKLSTLPSYE---ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKL 419 (1081)
T ss_pred hcccccccccc---chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chh
Confidence 66655433211 345688999999999998766667889999999999999998887754 4588999999999 779
Q ss_pred cccccCCcccCcccccccCEEEEccCCCcccccchhhhcCcccccEEEEeccccceeeccccccccccccceec-cccce
Q 001553 896 EYLWIPNSKMGDSILQNLEILKVDSCQKLMNLVTPSGAKSLVRLESLTIYGCSAMTQVVISEGDAAAAKEEIVF-IKLKS 974 (1055)
Q Consensus 896 ~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~l-~sL~~ 974 (1055)
+.+ |. .+..+..|+.|...+ +.+..+| -+..+++|+.+|+ +|++|..+..... .. +.||+
T Consensus 420 ~~L----p~-tva~~~~L~tL~ahs-N~l~~fP---e~~~l~qL~~lDl-S~N~L~~~~l~~~---------~p~p~Lky 480 (1081)
T KOG0618|consen 420 TTL----PD-TVANLGRLHTLRAHS-NQLLSFP---ELAQLPQLKVLDL-SCNNLSEVTLPEA---------LPSPNLKY 480 (1081)
T ss_pred hhh----hH-HHHhhhhhHHHhhcC-Cceeech---hhhhcCcceEEec-ccchhhhhhhhhh---------CCCcccce
Confidence 999 76 788899999988876 6688884 4568999999999 7888877654322 13 89999
Q ss_pred eeccccccc
Q 001553 975 LDLHHLDSL 983 (1055)
Q Consensus 975 L~l~~c~~L 983 (1055)
|++++.+.+
T Consensus 481 LdlSGN~~l 489 (1081)
T KOG0618|consen 481 LDLSGNTRL 489 (1081)
T ss_pred eeccCCccc
Confidence 999999864
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=2.1e-24 Score=220.33 Aligned_cols=154 Identities=23% Similarity=0.395 Sum_probs=94.2
Q ss_pred CCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCCCCCEEE
Q 001553 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEILS 307 (1055)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~ 307 (1055)
..+..|++++|... .+.+++ ..+..|.||++++|.+..+|.+++++..+..|+.++|.+..+ +.++.+..|+.|+
T Consensus 45 v~l~~lils~N~l~---~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE---VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchh---hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 34556666666554 444444 666667777777777777777777777777777776666655 6666666666666
Q ss_pred eeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCCCCC
Q 001553 308 LIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPR 387 (1055)
Q Consensus 308 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 387 (1055)
.++|.+..+|++|+.+-.|..|+..+| ++..+|.+ ++.+.+|..+++.+|.+. +.+++.-.++.
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~--------------~l~~~~i~m~~ 184 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLK--------------ALPENHIAMKR 184 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchh--------------hCCHHHHHHHH
Confidence 666666666666666666666666666 66666665 566666666666655543 23333333555
Q ss_pred CCEEEeecCCCCCCC
Q 001553 388 LTTLEIAVENDNALP 402 (1055)
Q Consensus 388 L~~L~l~~~~~~~~~ 402 (1055)
|++|+...|-.+.+|
T Consensus 185 L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLP 199 (565)
T ss_pred HHhcccchhhhhcCC
Confidence 555555544444444
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=9.4e-22 Score=211.00 Aligned_cols=363 Identities=18% Similarity=0.219 Sum_probs=194.3
Q ss_pred ccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCCCCCEEEee
Q 001553 231 LELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEILSLI 309 (1055)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~L~ 309 (1055)
+|-.++++|.+.- +..|.+. ..|..++.|.|.++.+..+|+.++.|.+|+.|.+++|++..+ ..++.|+.||.++++
T Consensus 9 VrGvDfsgNDFsg-~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSG-DRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCC-CcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 3444444444331 1455554 666666666666666666666666666666666666666655 556666666666666
Q ss_pred CCCCc--ccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccccccCccc-CCCCC
Q 001553 310 ESDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE-LMPLP 386 (1055)
Q Consensus 310 ~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~ 386 (1055)
+|+++ .+|..|-+|..|.+||+|.| .++++|.+ +..-+++-+|++++|++.. ++.. +-+++
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~-LE~AKn~iVLNLS~N~Iet--------------IPn~lfinLt 150 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTN-LEYAKNSIVLNLSYNNIET--------------IPNSLFINLT 150 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchh-hhhhcchh-hhhhcCcEEEEcccCcccc--------------CCchHHHhhH
Confidence 66554 56666666666666666666 66666665 5666666666666665542 2222 34455
Q ss_pred CCCEEEeecCCCCCCCccc-ccccccEEEEEEcCCCCCCCcccccccccccccchhhcchhhhheeeeecccccchhhcc
Q 001553 387 RLTTLEIAVENDNALPEGF-FVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKL 465 (1055)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~l~~~~i~~~~~ 465 (1055)
.|-.|+++.|....+|..+ .+.+|+.|.+
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L-------------------------------------------------- 180 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKL-------------------------------------------------- 180 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhc--------------------------------------------------
Confidence 5556666666555555443 2222222221
Q ss_pred cccccEEEeeeccccCcchhcccccccccCcCcEEEeccCCCCeeeecCCCccCCccccccccccccccccccccccccC
Q 001553 466 QGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRL 545 (1055)
Q Consensus 466 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 545 (1055)
++..-.--.+..+ ..+.+|++|++++-... +.. .+.
T Consensus 181 -----------s~NPL~hfQLrQL--PsmtsL~vLhms~TqRT----------------------------l~N---~Pt 216 (1255)
T KOG0444|consen 181 -----------SNNPLNHFQLRQL--PSMTSLSVLHMSNTQRT----------------------------LDN---IPT 216 (1255)
T ss_pred -----------CCChhhHHHHhcC--ccchhhhhhhcccccch----------------------------hhc---CCC
Confidence 1100000000000 12344555555442210 000 112
Q ss_pred CchhccccceeEEccCCCcccccchhhhhcCCcccEEeeccccchhHhhhccCCCCccccCCCCccceeccccceeecCC
Q 001553 546 STESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGN 625 (1055)
Q Consensus 546 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 625 (1055)
+...+.+|..++++.. ++..+|. .+-.+++|+.|++++ ++++++....| ...+|++|+++.
T Consensus 217 sld~l~NL~dvDlS~N-~Lp~vPe--cly~l~~LrrLNLS~-N~iteL~~~~~---------------~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSEN-NLPIVPE--CLYKLRNLRRLNLSG-NKITELNMTEG---------------EWENLETLNLSR 277 (1255)
T ss_pred chhhhhhhhhcccccc-CCCcchH--HHhhhhhhheeccCc-CceeeeeccHH---------------HHhhhhhhcccc
Confidence 2345666777776643 4555543 455678888888887 45655544332 345566666654
Q ss_pred CCcccccccCCCCCCCCCCCcCCccccCccccccccccccc--ccccCCCCccCCcccEEEEecCCccceecccchhhhc
Q 001553 626 LPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVK--SIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSL 703 (1055)
Q Consensus 626 c~~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l 703 (1055)
. .|+.+| ...+.++.|++|...+|+++ .+..+. ..+.+|+.+..++ ++|.-+ |. .+..|
T Consensus 278 N-QLt~LP-------------~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aan-N~LElV-PE-glcRC 338 (1255)
T KOG0444|consen 278 N-QLTVLP-------------DAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAAN-NKLELV-PE-GLCRC 338 (1255)
T ss_pred c-hhccch-------------HHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhc-cccccC-ch-hhhhh
Confidence 2 233322 23344677888888777443 332221 1344555666555 345433 32 35678
Q ss_pred cccCeEEEecccccceeccccccCCCCCccccccccccccccCCccccc
Q 001553 704 EQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCL 752 (1055)
Q Consensus 704 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 752 (1055)
+.|+.|.++.+. +..+|. ....++.|+.|++.+.|+|.--
T Consensus 339 ~kL~kL~L~~Nr-LiTLPe--------aIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 339 VKLQKLKLDHNR-LITLPE--------AIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred HHHHHhcccccc-eeechh--------hhhhcCCcceeeccCCcCccCC
Confidence 888888887766 433433 3345677778888877777644
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=2.3e-21 Score=208.01 Aligned_cols=176 Identities=22% Similarity=0.311 Sum_probs=145.0
Q ss_pred ccCCceEEEeecCCC--CCCCCCC-CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCC
Q 001553 205 ALKKCYAISWIDSSG--GELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNL 281 (1055)
Q Consensus 205 ~~~~~~~l~l~~~~~--~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 281 (1055)
+.+-+|.+++++|++ ..+|... .+++++-|.+...... .+|+.+ +.+.+|..|.+++|++.++--.++.|+.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~---~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE---QVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh---hChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 345677888888876 4677776 7888888888776655 788886 88889999999999888877778888889
Q ss_pred cEEEccCCCCC--CC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEccc
Q 001553 282 QTLCLDYSTLG--DI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358 (1055)
Q Consensus 282 r~L~L~~~~i~--~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 358 (1055)
|.+++++|.++ .+ +.|.+|..|.+|||++|+++..|..+.+-+++-+|++|+| ++..+|...+.+|+.|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhcccc
Confidence 99999988876 34 7888999999999999999999988888889999999998 88889888888889988899888
Q ss_pred CcccccccccCCcccccccCcccCCCCCCCCEEEeecCCCC
Q 001553 359 CFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (1055)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (1055)
|.+. ..+..+..+.+|++|.+++|...
T Consensus 160 NrLe--------------~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 160 NRLE--------------MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred chhh--------------hcCHHHHHHhhhhhhhcCCChhh
Confidence 8775 56777888888899888887643
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.74 E-value=7.8e-19 Score=191.37 Aligned_cols=134 Identities=31% Similarity=0.531 Sum_probs=104.1
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCC--CCChhHHHHHHHHHHHhCCCchhHHHHHHHHcCCCChHHHHHHHHHhcCCCCC
Q 001553 4 EANFSIEILNEEEAWRLFEVKLGND--DLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTEN 81 (1055)
Q Consensus 4 ~~~~~l~~L~~~~s~~Lf~~~a~~~--~~~~~l~~~~~~i~~~c~GlPLa~~~ig~~L~~~~~~~~W~~~l~~~~~~~~~ 81 (1055)
...|++++|+++||++||++.|+.. ..++.+++++++|+++|+|+|||++++|++|+.+.+.++|+++++++......
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~ 228 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE 228 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999632 35566788999999999999999999999997776788999999887511111
Q ss_pred CcccchHHHHHHHHHHHhcCCchhHHHHHHhhcCCCC-CcchH-HHHHHHHhhccccccc
Q 001553 82 NFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK-SFFAS-DLFKYCIGLGIFRGID 139 (1055)
Q Consensus 82 ~~~~~~~~i~~~L~~Sy~~L~~~~lk~cfly~~~fp~-~~i~~-~li~~wia~g~i~~~~ 139 (1055)
.......++.++.+||+.||.+ +|+||+|||+||+ +.|.+ .++++|+|+|||+.++
T Consensus 229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 0112345999999999999997 8999999999995 78886 9999999999998754
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2e-17 Score=149.86 Aligned_cols=165 Identities=26% Similarity=0.394 Sum_probs=135.7
Q ss_pred CCCCCCCCCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccC
Q 001553 220 GELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIG 298 (1055)
Q Consensus 220 ~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~ 298 (1055)
.+++..+.+++++.|-++.|... .+|+.+ ..+++|.+|++++|+|+++|.+++.+..||.|++.-|++..+ .+||
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~---~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLT---VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhcccccchhhhhhhhcccCcee---ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 44555556777777888888766 677777 788888888888888888888888888888888888887766 7888
Q ss_pred CCCCCCEEEeeCCCCc--ccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccccc
Q 001553 299 KLKNLEILSLIESDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSK 376 (1055)
Q Consensus 299 ~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 376 (1055)
.+.-|++||+.+|.+. .+|..|..++.||-|++++| .+..+|++ +|+|++||.|.+..|.+.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll-------------- 163 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL-------------- 163 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh--------------
Confidence 8888899988888765 68888888888888888888 78888887 888999998888888775
Q ss_pred cCcccCCCCCCCCEEEeecCCCCCCCcc
Q 001553 377 ASLDELMPLPRLTTLEIAVENDNALPEG 404 (1055)
Q Consensus 377 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (1055)
..+.+++.+..|+.|+|.+|....+|..
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 4678888888888888888888777765
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-16 Score=144.86 Aligned_cols=152 Identities=24% Similarity=0.381 Sum_probs=141.6
Q ss_pred ccCCceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcE
Q 001553 205 ALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQT 283 (1055)
Q Consensus 205 ~~~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~ 283 (1055)
.+..++++.+++|.+..+|+.+ .+.+|+.|++.+|.+. .+|.++ +.+++||.|+++-|.+..+|..|+.++-|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie---~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE---ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh---hcChhh-hhchhhhheecchhhhhcCccccCCCchhhh
Confidence 4567889999999999999998 9999999999999887 899888 9999999999999999999999999999999
Q ss_pred EEccCCCCC--CC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCc
Q 001553 284 LCLDYSTLG--DI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCF 360 (1055)
Q Consensus 284 L~L~~~~i~--~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 360 (1055)
||+.+|.+. .+ ..|..|.-|+.|+++.|.+.-+|..+++|++||.|.+.+| .+-.+|.+ +|.|+.|++|++.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccce
Confidence 999999986 34 7799999999999999999999999999999999999999 88899988 9999999999999998
Q ss_pred cc
Q 001553 361 VE 362 (1055)
Q Consensus 361 ~~ 362 (1055)
+.
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 76
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=7.5e-13 Score=156.29 Aligned_cols=235 Identities=22% Similarity=0.150 Sum_probs=114.5
Q ss_pred CcccccccccccccccccCCCCccCCcccEEEEecCCccceecccchhhhccccCeEEEecccccceeccccccCCCCCc
Q 001553 653 PNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPC 732 (1055)
Q Consensus 653 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~ 732 (1055)
++|+.|++.+|+++.+ |...++|++|+++++ +++.++. ..++|+.|++++|. +..++.
T Consensus 222 ~~L~~L~L~~N~Lt~L-----P~lp~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~Ls~N~-L~~Lp~---------- 279 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-----PALPPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSNP-LTHLPA---------- 279 (788)
T ss_pred cCCCEEEccCCcCCCC-----CCCCCCCcEEEecCC-ccCcccC-----cccccceeeccCCc-hhhhhh----------
Confidence 4677777777777655 223467777777774 5666542 24577777777765 444432
Q ss_pred cccccccccccccCCcccccCCCCCCCCCCCccEEEEccCCCccccccccccccccccccccCCCCCccccccccCCcce
Q 001553 733 FAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEE 812 (1055)
Q Consensus 733 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 812 (1055)
.+++|+.|+++++ .++.++. .+++|+.|+++++ +++.+| ....+|+.
T Consensus 280 -lp~~L~~L~Ls~N-~Lt~LP~-----~p~~L~~LdLS~N-~L~~Lp-------------------------~lp~~L~~ 326 (788)
T PRK15387 280 -LPSGLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDN-QLASLP-------------------------ALPSELCK 326 (788)
T ss_pred -chhhcCEEECcCC-ccccccc-----cccccceeECCCC-ccccCC-------------------------CCcccccc
Confidence 2234555555544 2333322 2355666666554 344331 11234555
Q ss_pred eeeccccccccccCCCCCCccCCCccEEEEecCCCCcccHHHHHHhcCCceEEeecccceeeeccCccccccceEEcccc
Q 001553 813 LGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICL 892 (1055)
Q Consensus 813 L~l~~~~~~~~~~~~~~~~~~l~sL~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~c~l~~~~~~~~~l~~L~~L~l~~c 892 (1055)
|++++|....+.. ...+|+.|++++|.++.+|.. .++|+.|++++|.+..++.. +++|+.|+++++
T Consensus 327 L~Ls~N~L~~LP~-------lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 327 LWAYNNQLTSLPT-------LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN 392 (788)
T ss_pred cccccCccccccc-------cccccceEecCCCccCCCCCC----CcccceehhhccccccCccc---ccccceEEecCC
Confidence 5555554433211 113455555555555555531 24555555555554444322 234555555542
Q ss_pred ccccccccCCcccCcccccccCEEEEccCCCcccccchhhhcCcccccEEEEeccccceeeccccccccccccceecccc
Q 001553 893 NDLEYLWIPNSKMGDSILQNLEILKVDSCQKLMNLVTPSGAKSLVRLESLTIYGCSAMTQVVISEGDAAAAKEEIVFIKL 972 (1055)
Q Consensus 893 ~~L~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~l~sL 972 (1055)
.++.+ |. .+++|+.|+++++ +++.+| . .+.+|+.|+++++ .++.+|..... +++|
T Consensus 393 -~Lt~L----P~----l~s~L~~LdLS~N-~LssIP--~---l~~~L~~L~Ls~N-qLt~LP~sl~~---------L~~L 447 (788)
T PRK15387 393 -RLTSL----PV----LPSELKELMVSGN-RLTSLP--M---LPSGLLSLSVYRN-QLTRLPESLIH---------LSSE 447 (788)
T ss_pred -cccCC----CC----cccCCCEEEccCC-cCCCCC--c---chhhhhhhhhccC-cccccChHHhh---------ccCC
Confidence 34443 22 1244555555553 244443 1 1234455555442 24444432221 4455
Q ss_pred ceeeccccc
Q 001553 973 KSLDLHHLD 981 (1055)
Q Consensus 973 ~~L~l~~c~ 981 (1055)
+.|++++++
T Consensus 448 ~~LdLs~N~ 456 (788)
T PRK15387 448 TTVNLEGNP 456 (788)
T ss_pred CeEECCCCC
Confidence 555555554
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=4.5e-15 Score=152.67 Aligned_cols=138 Identities=23% Similarity=0.333 Sum_probs=109.0
Q ss_pred CCCCCCCCCCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCc-CCcccccCcCCcEEEccC-CCCCCC--
Q 001553 219 GGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-LPSSIDLLVNLQTLCLDY-STLGDI-- 294 (1055)
Q Consensus 219 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~Lr~L~L~~-~~i~~l-- 294 (1055)
+.++|..+- +....+.|..|.+. .||+.+|+.+++||.|||+.|+|+. -|+.|..|..|-.|-+.+ |+|+.+
T Consensus 58 L~eVP~~LP-~~tveirLdqN~I~---~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 58 LTEVPANLP-PETVEIRLDQNQIS---SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred cccCcccCC-CcceEEEeccCCcc---cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 344444431 23456778888777 8999999999999999999999986 478898888888777766 788888
Q ss_pred cccCCCCCCCEEEeeCCCCcccc-hhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcc
Q 001553 295 TIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFV 361 (1055)
Q Consensus 295 ~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 361 (1055)
..|++|..|+.|.+.-|++.-++ +.+..|++|+.|.+.+| .+..++...+..+..++++++..|.+
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcc
Confidence 67899999999988888887554 56888999999999888 78888887788888888888776653
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.42 E-value=1.7e-13 Score=165.62 Aligned_cols=158 Identities=25% Similarity=0.339 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCC--CCcCCcc-cccCcCCcEEEccCCC-CCCC-
Q 001553 220 GELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ--LFSLPSS-IDLLVNLQTLCLDYST-LGDI- 294 (1055)
Q Consensus 220 ~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~--i~~lp~~-i~~L~~Lr~L~L~~~~-i~~l- 294 (1055)
...|........|...+.++... .++.+. ..+.|+.|-+.+|. +..++.. |..+++||+|||++|. +..+
T Consensus 514 ~~~~~~~~~~~~rr~s~~~~~~~---~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 514 SEIPQVKSWNSVRRMSLMNNKIE---HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred cccccccchhheeEEEEeccchh---hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 34555556678889988888765 555543 45579999999986 6666644 7789999999999885 6677
Q ss_pred cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccc
Q 001553 295 TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKK 374 (1055)
Q Consensus 295 ~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 374 (1055)
.+|++|.|||||+++++.++.+|.++++|++|++||+..+..+..+| +.+..|.+||+|.+...... .
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~-----------~ 656 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALS-----------N 656 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccccc-----------c
Confidence 88999999999999999999999999999999999999986666664 44667999999998765422 1
Q ss_pred cccCcccCCCCCCCCEEEee
Q 001553 375 SKASLDELMPLPRLTTLEIA 394 (1055)
Q Consensus 375 ~~~~~~~l~~l~~L~~L~l~ 394 (1055)
......++.++.+|+.+.+.
T Consensus 657 ~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 657 DKLLLKELENLEHLENLSIT 676 (889)
T ss_pred chhhHHhhhcccchhhheee
Confidence 23456666777777766664
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=6.3e-12 Score=149.78 Aligned_cols=95 Identities=25% Similarity=0.387 Sum_probs=42.4
Q ss_pred CCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCC
Q 001553 257 ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCF 335 (1055)
Q Consensus 257 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 335 (1055)
+|+.|++++|.+..+|..+. .+|++|++++|.++.+ ..+. .+|+.|++++|.+..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N- 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN- 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-
Confidence 44445555554444444333 2445555554444444 2121 244555555554444444432 24455555544
Q ss_pred CCCCcChhhhCCCCCCCEEEcccCcc
Q 001553 336 HLKVIAPNVIASFTRLEELYMSNCFV 361 (1055)
Q Consensus 336 ~l~~~p~~~i~~L~~L~~L~l~~~~~ 361 (1055)
.+..+|.. +. .+|++|++++|.+
T Consensus 273 ~L~~LP~~-l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 273 KISCLPEN-LP--EELRYLSVYDNSI 295 (754)
T ss_pred ccCccccc-cC--CCCcEEECCCCcc
Confidence 44444432 21 2455555554443
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=2.8e-11 Score=143.15 Aligned_cols=157 Identities=19% Similarity=0.221 Sum_probs=112.2
Q ss_pred ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccC
Q 001553 209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY 288 (1055)
Q Consensus 209 ~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~ 288 (1055)
-..+++..+.+..+|..+. ++|+.|.+..|.+. .+|. .+++|++|++++|.++.+|.. ..+|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt---~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT---SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC---CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 4467777777777877653 47888888888766 6664 357888888888888888754 35788888888
Q ss_pred CCCCCCcccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCccccccccc
Q 001553 289 STLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDE 368 (1055)
Q Consensus 289 ~~i~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 368 (1055)
|.+..++. -..+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. . .+|+.|++++|.+..
T Consensus 272 N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~~----- 336 (788)
T PRK15387 272 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLTS----- 336 (788)
T ss_pred Cchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCcccc-----
Confidence 88877643 235688888888888888753 467888888888 77777652 2 356677777776652
Q ss_pred CCcccccccCcccCCCCCCCCEEEeecCCCCCCCc
Q 001553 369 GSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (1055)
Q Consensus 369 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (1055)
++ .+ ..+|+.|++++|.+..+|.
T Consensus 337 ---------LP-~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 337 ---------LP-TL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ---------cc-cc--ccccceEecCCCccCCCCC
Confidence 11 11 1468888888888776664
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.30 E-value=8.6e-14 Score=144.76 Aligned_cols=271 Identities=15% Similarity=0.167 Sum_probs=167.8
Q ss_pred hccccceeEEccCCCcccccchhhhhcCCcccEEeeccccchhHhhhccCCCCccccCCCCccceeccccceeecCCCCc
Q 001553 549 SFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPE 628 (1055)
Q Consensus 549 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 628 (1055)
.+|+++.|.+.+|.++++-...+....++.|++|.+..|..++...... ....+++|++|.+++||.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~-------------la~gC~kL~~lNlSwc~q 228 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY-------------LAEGCRKLKYLNLSWCPQ 228 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH-------------HHHhhhhHHHhhhccCch
Confidence 3566666677777666666555566777788888888877776654431 123578888888888887
Q ss_pred ccccccCCCCCCCCCCCcCCccccCcccccccccc-cccccccCCCCccCCcccEEEEecCCccceecccchhhhccccC
Q 001553 629 LKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEI-NVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQ 707 (1055)
Q Consensus 629 L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~ 707 (1055)
+.. .+. .........++++..+|| .+..-.......+++-+.++++.+|..+++.....+...+..|+
T Consensus 229 i~~---~gv--------~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 229 ISG---NGV--------QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred hhc---Ccc--------hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 765 111 001112445667766777 22211111122456667777778888787765444556678888
Q ss_pred eEEEecccccceeccccccCCCCCccccccccccccccCCcccccCCCCCCCCCCCccEEEEccCCCccccccccccccc
Q 001553 708 HLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHS 787 (1055)
Q Consensus 708 ~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~ 787 (1055)
.|+.++|.++.+.+. .......++|+.|.+..|..+++..-.....+++.|+.+++.+|.....-
T Consensus 298 ~l~~s~~t~~~d~~l------~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--------- 362 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVL------WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--------- 362 (483)
T ss_pred hhcccCCCCCchHHH------HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh---------
Confidence 888888887644322 12223457888888888887776655555557889999998888654432
Q ss_pred cccccccCCCCCccccccccCCcceeeeccccccccccCC-CC-CCccCCCccEEEEec-CCCCcccHHHHHHhcCCceE
Q 001553 788 NEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGD-FP-QDHLFGSLKDLEVRD-DDSASVPIGLLEKFHGLENL 864 (1055)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~-~~~~l~sL~~L~l~~-~~l~~~~~~~l~~l~~L~~L 864 (1055)
.+......+|.|+.|.+++|......... +. .-.+...|..+.+++ ..++....+.+..+++||++
T Consensus 363 -----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 363 -----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred -----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 23444567899999999988876533100 00 012345566666666 55555555666666677776
Q ss_pred Eeecc
Q 001553 865 NLSFC 869 (1055)
Q Consensus 865 ~l~~c 869 (1055)
++-+|
T Consensus 432 ~l~~~ 436 (483)
T KOG4341|consen 432 ELIDC 436 (483)
T ss_pred eeech
Confidence 66666
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.29 E-value=4.1e-14 Score=147.15 Aligned_cols=299 Identities=17% Similarity=0.209 Sum_probs=151.4
Q ss_pred cccceeEEccCCCcccccchhhhhcCCcccEEeeccccchhHhhhccCCCCccccCCCCccceeccccceeecCCCCccc
Q 001553 551 SELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELK 630 (1055)
Q Consensus 551 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 630 (1055)
..|+.|.+++|.....-+.......+|++++|.+.+|.++++..... ....+++|+.|.+..|+.++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-------------la~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-------------LARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-------------HHHhcchhhhhhhcccchhH
Confidence 45778888888776665555667788999999999998776654432 12356777777777777766
Q ss_pred ccccCCCCCCCCCCCcCCccccCcccccccccccccccccCCCCccCCcccEEEEecCCccceecccchhhhccccCeEE
Q 001553 631 SFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLE 710 (1055)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 710 (1055)
+... ..+...|++|++|++++|+.++.-......+++..++.+.
T Consensus 205 ~~~L------------------------------------k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~ 248 (483)
T KOG4341|consen 205 DVSL------------------------------------KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLS 248 (483)
T ss_pred HHHH------------------------------------HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhh
Confidence 5211 1112356666666666666655533333445556666665
Q ss_pred EecccccceeccccccCCCCCccccccccccccccCCcccccCCCCCCCCCCCccEEEEccCCCcccccccccccccccc
Q 001553 711 IRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEK 790 (1055)
Q Consensus 711 i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~ 790 (1055)
..+|..++.-.- .......+-+..+++..|..+++.........+..|+.|..++|..+...
T Consensus 249 ~kGC~e~~le~l------~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~------------ 310 (483)
T KOG4341|consen 249 LKGCLELELEAL------LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE------------ 310 (483)
T ss_pred hcccccccHHHH------HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH------------
Confidence 556654321000 00011223344455555555544332211224666777777777665544
Q ss_pred ccccCCCCCccccccccCCcceeeeccccccccccCCCCCCccCCCccEEEEecCCCCcccHHHHHHhcCCceEEeeccc
Q 001553 791 KQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCS 870 (1055)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~sL~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~c~ 870 (1055)
.+.++...+++|+.|.+..|...... .| +. .-.+++.|+.+++.+|.
T Consensus 311 --------~l~aLg~~~~~L~~l~l~~c~~fsd~--~f-------------------t~----l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 311 --------VLWALGQHCHNLQVLELSGCQQFSDR--GF-------------------TM----LGRNCPHLERLDLEECG 357 (483)
T ss_pred --------HHHHHhcCCCceEEEeccccchhhhh--hh-------------------hh----hhcCChhhhhhcccccc
Confidence 22333445677777777776642211 00 00 11234445555555551
Q ss_pred ce---eeeccCccccccceEEccccccccccccCCcccCcccccccCEEEEccCCCcccccchhhhcCcccccEEEEecc
Q 001553 871 YK---ELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKVDSCQKLMNLVTPSGAKSLVRLESLTIYGC 947 (1055)
Q Consensus 871 l~---~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c 947 (1055)
.. ++......++.||.|.++.|..+++-.+............|+.|++++|+.++... -+.+..+++|+.+++.+|
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-LEHLSICRNLERIELIDC 436 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-HHHHhhCcccceeeeech
Confidence 11 11111223455555555555444432110000011233445556666666555443 233445555666555555
Q ss_pred ccc
Q 001553 948 SAM 950 (1055)
Q Consensus 948 ~~l 950 (1055)
..+
T Consensus 437 q~v 439 (483)
T KOG4341|consen 437 QDV 439 (483)
T ss_pred hhh
Confidence 544
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=5.2e-13 Score=137.74 Aligned_cols=274 Identities=20% Similarity=0.200 Sum_probs=183.0
Q ss_pred EEEEecCCCCCCCCccccCCceEEEeecCCCCCCCCCC--CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccC-
Q 001553 189 EFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTN- 265 (1055)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~- 265 (1055)
.+..++.++.+.|. +.+.....+.+..|.|..+|+.. .+++||.|+|+.|.+. .|.++.|.+++.|-.|-+.+
T Consensus 50 ~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh---hcChHhhhhhHhhhHHHhhcC
Confidence 44566777777765 67888899999999999999886 8999999999999988 78888899999988877766
Q ss_pred CCCCcCCc-ccccCcCCcEEEccCCCCCCC--cccCCCCCCCEEEeeCCCCcccch-hhcCCCCCcEEecccCCCCC---
Q 001553 266 MQLFSLPS-SIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLK--- 338 (1055)
Q Consensus 266 ~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~--- 338 (1055)
|.|+.+|+ .|+.|..|+-|.+.-|.+..+ ..|..|++|..|.+..|.+..++. .+..+..++++.+..|..+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 89999995 599999999999999999877 789999999999999999988886 78889999999877663111
Q ss_pred ---------CcChhhhCCCCCCCEEEcccCcccc--------ccccc---CCcccc--cccCcccCCCCCCCCEEEeecC
Q 001553 339 ---------VIAPNVIASFTRLEELYMSNCFVEW--------KVEDE---GSSSKK--SKASLDELMPLPRLTTLEIAVE 396 (1055)
Q Consensus 339 ---------~~p~~~i~~L~~L~~L~l~~~~~~~--------~~~~~---~~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 396 (1055)
..|.. .+.....+-..+.+..+.. ..+.. -...+. ...-...++.+++|++|++++|
T Consensus 206 L~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 206 LPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred cchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 11111 1222221111111111100 00000 000110 0111233889999999999999
Q ss_pred CCCCCCccc--ccccccEEEEEEcCCCCCCCcccccccccccccchhhcchhhhheeeeecccccchhhcccccccEEEe
Q 001553 397 NDNALPEGF--FVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYL 474 (1055)
Q Consensus 397 ~~~~~~~~~--~l~~L~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~l~~~~i~~~~~~~l~~L~~L 474 (1055)
.++.+.... ....++.|.+..+. + ..+....+.++.+|+.|
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~----------------------------l---------~~v~~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNK----------------------------L---------EFVSSGMFQGLSGLKTL 327 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcch----------------------------H---------HHHHHHhhhccccceee
Confidence 988776543 44555554432111 0 11222235677888888
Q ss_pred eeccccCcchhcccccccccCcCcEEEeccCC
Q 001553 475 CLDKFQGVKNILFELDTQGFSQLKHLLVQNNP 506 (1055)
Q Consensus 475 ~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 506 (1055)
+|.+. .++.+.|... ..+..|.+|.+-..+
T Consensus 328 ~L~~N-~it~~~~~aF-~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 328 SLYDN-QITTVAPGAF-QTLFSLSTLNLLSNP 357 (498)
T ss_pred eecCC-eeEEEecccc-cccceeeeeehccCc
Confidence 88774 3343443332 245677777775543
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=3.1e-11 Score=143.89 Aligned_cols=164 Identities=19% Similarity=0.305 Sum_probs=128.4
Q ss_pred CCceEEEeecCCCCCCCCCCCCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEc
Q 001553 207 KKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL 286 (1055)
Q Consensus 207 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L 286 (1055)
.+...+.+.+..+..+|..+ .+.|+.|++.+|.+. .+|..++ .+|++|++++|.+..+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt---sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELK---SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC---cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 35677888888888888755 357999999999877 7888764 589999999999999998765 48999999
Q ss_pred cCCCCCCC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccc
Q 001553 287 DYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV 365 (1055)
Q Consensus 287 ~~~~i~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 365 (1055)
++|.+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++| .++.+|.. +. .+|+.|++++|.+..
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-- 318 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTA-- 318 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcccc--
Confidence 99998887 4443 589999999999999998765 58999999999 88888864 33 478889999887762
Q ss_pred cccCCcccccccCcccCCCCCCCCEEEeecCCCCCCCc
Q 001553 366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (1055)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (1055)
.+..+ .++|+.|.++.|.+..+|.
T Consensus 319 ------------LP~~l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 319 ------------LPETL--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred ------------CCccc--cccceeccccCCccccCCh
Confidence 22222 2578888888877665553
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=2.5e-10 Score=110.39 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=46.3
Q ss_pred cCCCCCcEEEccCCCCCcCCcccc-cCcCCcEEEccCCCCCCCcccCCCCCCCEEEeeCCCCcccchhh-cCCCCCcEEe
Q 001553 253 TGMRELKVVDLTNMQLFSLPSSID-LLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLD 330 (1055)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~ 330 (1055)
.+..++|.|+|.++.|..+. .++ .+.+|+.|++++|.|+.++.+..+.+|++|++++|.++.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45567788888888877763 455 57788888888888888877888888888888888888776555 3578888888
Q ss_pred cccCCCCCCcCh-hhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCCCCCCCEEEee
Q 001553 331 LTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIA 394 (1055)
Q Consensus 331 l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 394 (1055)
+++| ++..+.. ..++.+++|++|++.+|.+.. ......--+..+++|+.|+-.
T Consensus 95 L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~----------~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE----------KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGG----------STTHHHHHHHH-TT-SEETTE
T ss_pred CcCC-cCCChHHhHHHHcCCCcceeeccCCcccc----------hhhHHHHHHHHcChhheeCCE
Confidence 8887 5555432 225667788888887776642 011222334556677766643
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=3.7e-11 Score=129.92 Aligned_cols=176 Identities=25% Similarity=0.323 Sum_probs=153.1
Q ss_pred CceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEc
Q 001553 208 KCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL 286 (1055)
Q Consensus 208 ~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L 286 (1055)
....++++.|.+.++|... .+-.|..+.+..|.+. .+|..+ ..+..|.+|||+.|++..+|..++.|. |++|-+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r---~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR---TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccce---ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 4456777888888888777 6778888888888877 788877 889999999999999999999998765 999999
Q ss_pred cCCCCCCC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccc
Q 001553 287 DYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV 365 (1055)
Q Consensus 287 ~~~~i~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 365 (1055)
++|+++.+ +.++.+.+|..||.+.|.+..+|..++.+.+|+.|++..| .+..+|.+ ++.| .|..|+++.|.+.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis--- 224 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKIS--- 224 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCcee---
Confidence 99999988 8899999999999999999999999999999999999999 88899987 6644 5889999998886
Q ss_pred cccCCcccccccCcccCCCCCCCCEEEeecCCCCCCCccc
Q 001553 366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF 405 (1055)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 405 (1055)
.++..+.+|++|++|.|..|....-|..+
T Consensus 225 -----------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 -----------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred -----------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 57888999999999999999988887776
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=5.1e-10 Score=108.24 Aligned_cols=136 Identities=26% Similarity=0.340 Sum_probs=52.1
Q ss_pred ccCCCCCcCCcccccCcCCcEEEccCCCCCCCcccC-CCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcC
Q 001553 263 LTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIG-KLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIA 341 (1055)
Q Consensus 263 L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~-~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p 341 (1055)
++.+.|+..|. +.+..++|.|+|++|.|..++.++ .+.+|++|++++|.++.++ ++..+++|++|++++| .++.++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccc
Confidence 34455566654 456668999999999999998888 6899999999999999985 6889999999999999 899987
Q ss_pred hhhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCCCCCCCEEEeecCCCCCCCccc-----ccccccEE
Q 001553 342 PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF-----FVRELERF 413 (1055)
Q Consensus 342 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~l~~L~~l 413 (1055)
......+++|++|++++|.+.. -..+..++.+++|+.|++.+|.+...+..- .+++|+.|
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~------------l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISD------------LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---S------------CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred cchHHhCCcCCEEECcCCcCCC------------hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 6523469999999999998864 244677888999999999999866544321 56667665
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=8.7e-11 Score=127.13 Aligned_cols=168 Identities=23% Similarity=0.355 Sum_probs=146.3
Q ss_pred CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCCCCCE
Q 001553 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEI 305 (1055)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~ 305 (1055)
.+......+++.|++. .+|..+ ..+..|..|.|+.|.+..+|..+++|..|.|||++.|.++.+ ..++.| -|++
T Consensus 73 ~ltdt~~aDlsrNR~~---elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS---ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKV 147 (722)
T ss_pred cccchhhhhccccccc---cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-ccee
Confidence 4455567788888877 888876 788899999999999999999999999999999999999988 556555 4899
Q ss_pred EEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCCC
Q 001553 306 LSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL 385 (1055)
Q Consensus 306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (1055)
|-+++|+++.+|..|+-+.+|.+||.+.| .+..+|.. ++.+.+|+.|.+..|.+. ..++++..|
T Consensus 148 li~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~--------------~lp~El~~L 211 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE--------------DLPEELCSL 211 (722)
T ss_pred EEEecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh--------------hCCHHHhCC
Confidence 99999999999999999999999999999 89999988 999999999999988775 578888877
Q ss_pred CCCCEEEeecCCCCCCCccc-ccccccEEEEE
Q 001553 386 PRLTTLEIAVENDNALPEGF-FVRELERFKIL 416 (1055)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~-~l~~L~~l~l~ 416 (1055)
+ |..|+++.|++..+|-.+ .++.|+.+.+.
T Consensus 212 p-Li~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 212 P-LIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred c-eeeeecccCceeecchhhhhhhhheeeeec
Confidence 5 899999999999999876 67777776654
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=2.1e-10 Score=114.10 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=141.2
Q ss_pred cccCCceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCCCC-CCcChhh-------------------hcCCCCCcEEE
Q 001553 204 DALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVD-VNIPQRF-------------------FTGMRELKVVD 262 (1055)
Q Consensus 204 ~~~~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~-~~l~~~~-------------------~~~l~~Lr~L~ 262 (1055)
.+++.+..+-++.++-..+.... .-+.|.++.+.+...... .-+|... ...-+.|..||
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 45666666777766544333322 345566666655432210 0112111 02245789999
Q ss_pred ccCCCCCcCCcccccCcCCcEEEccCCCCCCCcccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcCh
Q 001553 263 LTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP 342 (1055)
Q Consensus 263 L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 342 (1055)
|++|.|+.+.+++.-++.+|+|++++|.+..+.++..|++|+.||+++|.++++-..=.+|-|.++|.+++| .+..+..
T Consensus 291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSG 369 (490)
T KOG1259|consen 291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLSG 369 (490)
T ss_pred ccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhhh
Confidence 999999999999999999999999999999998899999999999999988888766678899999999999 7888864
Q ss_pred hhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCCCCCCCEEEeecCCCCCCCc
Q 001553 343 NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (1055)
Q Consensus 343 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (1055)
+++|.+|..|++.+|++.. -.....+++++.|+.|.+.+|.+..++.
T Consensus 370 --L~KLYSLvnLDl~~N~Ie~------------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 370 --LRKLYSLVNLDLSSNQIEE------------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred --hHhhhhheeccccccchhh------------HHHhcccccccHHHHHhhcCCCccccch
Confidence 8999999999999998874 2445778999999999999998776654
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1.5e-09 Score=108.10 Aligned_cols=129 Identities=24% Similarity=0.239 Sum_probs=110.7
Q ss_pred CCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCCCCCEE
Q 001553 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEIL 306 (1055)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L 306 (1055)
...|+++++++|.+. .+.++. .-.+.+|+|++++|.|..+-. +..|++|+.|||++|.+.++ ..-.+|-|.++|
T Consensus 283 Wq~LtelDLS~N~I~---~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT---QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh---hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 456889999999877 666665 778999999999999988744 88999999999999999988 555689999999
Q ss_pred EeeCCCCcccchhhcCCCCCcEEecccCCCCCCcCh-hhhCCCCCCCEEEcccCcccc
Q 001553 307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEW 363 (1055)
Q Consensus 307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~ 363 (1055)
.+++|.+..+ .++++|++|..||+++| ++..+.. ..||+|+.|+++.+.+|.+..
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999998887 57999999999999999 7776642 238999999999999998763
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=3.1e-08 Score=113.33 Aligned_cols=171 Identities=26% Similarity=0.342 Sum_probs=100.1
Q ss_pred CceEEEeecCCCCCCCCCCCCC--CccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEE
Q 001553 208 KCYAISWIDSSGGELPEGLECP--QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC 285 (1055)
Q Consensus 208 ~~~~l~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~ 285 (1055)
.++.+.+.++.+.++++..... +|+.|++.+|.+. .+|..+ +.++.|+.|++++|.+..+|...+.+..|+.|+
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~---~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE---SLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchh---hhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 4556666666666666655332 5666666666554 444333 566666666666666666666555666666666
Q ss_pred ccCCCCCCC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCccccc
Q 001553 286 LDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK 364 (1055)
Q Consensus 286 L~~~~i~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 364 (1055)
+++|.+..+ ..+..+.+|++|.+++|.+...+..+.++.++..|.+.++ .+..++.. ++.+.+++.|++++|.+..
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~s~n~i~~- 269 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDLSNNQISS- 269 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceeccccccccc-
Confidence 666666666 3334555566666666655555556666666666665555 44443332 5666666666666665542
Q ss_pred ccccCCcccccccCcccCCCCCCCCEEEeecCCCC
Q 001553 365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (1055)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (1055)
+..++.+.+++.|+++++...
T Consensus 270 --------------i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 270 --------------ISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred --------------cccccccCccCEEeccCcccc
Confidence 122566666666666665543
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=1.6e-08 Score=112.41 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=76.7
Q ss_pred CccEEEccCCCCCCC--CCcChhhhcCC-CCCcEEEccCCCCC-----cCCcccccCcCCcEEEccCCCCCC-----C-c
Q 001553 230 QLELLLLSSEHSSVD--VNIPQRFFTGM-RELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD-----I-T 295 (1055)
Q Consensus 230 ~Lr~L~l~~~~~~~~--~~l~~~~~~~l-~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----l-~ 295 (1055)
+|+.|++.+|..... ..+.. .+..+ ++|+.|++++|.+. .++..+..+.+|++|++++|.+.. + .
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred cccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 366666666543210 01111 12344 56666666666655 233445555566666666666541 1 2
Q ss_pred ccCCCCCCCEEEeeCCCCc-----ccchhhcCCCCCcEEecccCCCCCCcChhhhC-----CCCCCCEEEcccCcccccc
Q 001553 296 IIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIA-----SFTRLEELYMSNCFVEWKV 365 (1055)
Q Consensus 296 ~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~-----~L~~L~~L~l~~~~~~~~~ 365 (1055)
.+..+.+|++|++++|.+. .++..+.++++|++|++++| .++......+. ..+.|++|++++|.+..
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~-- 264 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITD-- 264 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCc--
Confidence 3444556666666666543 23334555566666666666 34331111111 12566666666665531
Q ss_pred cccCCcccccccCcccCCCCCCCCEEEeecCCCC
Q 001553 366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (1055)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (1055)
.........+..+++|+.+++++|...
T Consensus 265 -------~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 265 -------DGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred -------HHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 000112233444456666666655543
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.60 E-value=3.2e-08 Score=109.89 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=24.0
Q ss_pred cCCcEEEccCCCCC-----CC-cccCCCCCCCEEEeeCCCCc-----ccchhhcCCCCCcEEecccC
Q 001553 279 VNLQTLCLDYSTLG-----DI-TIIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNC 334 (1055)
Q Consensus 279 ~~Lr~L~L~~~~i~-----~l-~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~ 334 (1055)
.+|+.|++++|.++ .+ ..+..+.+|++|++++|.++ .++..+..+++|++|++++|
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 44455555544443 11 23334444444554444443 12233333444444544444
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=4.5e-08 Score=111.92 Aligned_cols=170 Identities=26% Similarity=0.392 Sum_probs=129.5
Q ss_pred CCCCccEEEccCCCCCCCCCcChhhhcCCC-CCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCCCCC
Q 001553 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMR-ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLE 304 (1055)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~ 304 (1055)
..+.++.|.+.++.+. .++... ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+ ...+.+.+|+
T Consensus 114 ~~~~l~~L~l~~n~i~---~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLDNNNIT---DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecCCcccc---cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 5577888888888776 677655 5553 88888888888888887788888888888888888888 4444888888
Q ss_pred EEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCC
Q 001553 305 ILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMP 384 (1055)
Q Consensus 305 ~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 384 (1055)
.|++++|.+..+|..+..+.+|++|.+++| .....+.. +++++++..+.+.++.+. ..+..++.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N-~~~~~~~~-~~~~~~l~~l~l~~n~~~--------------~~~~~~~~ 253 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNN-SIIELLSS-LSNLKNLSGLELSNNKLE--------------DLPESIGN 253 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCC-cceecchh-hhhcccccccccCCceee--------------eccchhcc
Confidence 888888888888887777778888888887 34444443 777888888877766554 22566788
Q ss_pred CCCCCEEEeecCCCCCCCcccccccccEEEEE
Q 001553 385 LPRLTTLEIAVENDNALPEGFFVRELERFKIL 416 (1055)
Q Consensus 385 l~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~ 416 (1055)
+.+++.|+++.|.+..++....+.+++.+.+.
T Consensus 254 l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 254 LSNLETLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred ccccceeccccccccccccccccCccCEEecc
Confidence 88899999999998888774366777776553
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.9e-08 Score=104.83 Aligned_cols=200 Identities=23% Similarity=0.224 Sum_probs=134.4
Q ss_pred cCCceEEEeecCCCCCCCC--CC-CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcc--cccCcC
Q 001553 206 LKKCYAISWIDSSGGELPE--GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS--IDLLVN 280 (1055)
Q Consensus 206 ~~~~~~l~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~ 280 (1055)
.++++.+++.++.+...+. .. .|+++|.|+++.|-+.-...+ ..+...+++|+.|+++.|.+...-++ -..+.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v-~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV-LKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH-HHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4578888888888766663 23 799999999998844311122 24457899999999999987643322 236789
Q ss_pred CcEEEccCCCCC--CC-cccCCCCCCCEEEeeCCC-CcccchhhcCCCCCcEEecccCCCCCCcCh-hhhCCCCCCCEEE
Q 001553 281 LQTLCLDYSTLG--DI-TIIGKLKNLEILSLIESD-IVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELY 355 (1055)
Q Consensus 281 Lr~L~L~~~~i~--~l-~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~ 355 (1055)
|+.|.+++|.++ ++ .-...+++|+.|++.+|. +..--.....+..|+.|||++| .+-..+. -.++.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhhh
Confidence 999999999987 34 556678899999999983 3322234455778999999998 5555552 1268899999999
Q ss_pred cccCcccccccccCCcccccccCcccCCCCCCCCEEEeecCCCCCCCccc---ccccccEEE
Q 001553 356 MSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF---FVRELERFK 414 (1055)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~l~~L~~l~ 414 (1055)
++.+.+.. +... ..........++.|+.|++..|++...++-- .+++|+++.
T Consensus 278 ls~tgi~s-i~~~------d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 278 LSSTGIAS-IAEP------DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccccCcch-hcCC------CccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 88887653 0000 0011222455678999999988876555322 444555544
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=1.9e-06 Score=93.77 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=39.1
Q ss_pred HHHhcCCceEEeecccceeeeccCccccccceEEccccccccccccCCcccCcccccccCEEEEccCCCcccc
Q 001553 855 LEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKVDSCQKLMNL 927 (1055)
Q Consensus 855 l~~l~~L~~L~l~~c~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~l 927 (1055)
+..+..++.|+|++|.+++++ ..+++|++|.+++|.+|+.+ |. . .+++|+.|+|++|.++..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsL----P~-~--LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTL----PG-S--IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccC----Cc-h--hhhhhhheEccCccccccc
Confidence 334566777777777666665 22456777777777777666 32 1 2456777777777666655
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=5.8e-07 Score=71.24 Aligned_cols=58 Identities=34% Similarity=0.484 Sum_probs=33.3
Q ss_pred CccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCC-cccccCcCCcEEEccCCC
Q 001553 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYST 290 (1055)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~ 290 (1055)
+|++|++.+|.+. .+|+..|..+++|++|++++|.+..+| ..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~---~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT---EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES---EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC---ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555666655544 555555566666666666666665544 345555666666655554
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.9e-07 Score=98.81 Aligned_cols=181 Identities=25% Similarity=0.231 Sum_probs=134.0
Q ss_pred cccCCceEEEeecCCCCCCCCCC----CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCC--cCCccccc
Q 001553 204 DALKKCYAISWIDSSGGELPEGL----ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF--SLPSSIDL 277 (1055)
Q Consensus 204 ~~~~~~~~l~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~ 277 (1055)
.....+|.++++.|-+..+.... .+++|+.|.++.|.... -.....-..+.+|+.|.++.|++. .+-.....
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--CccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 45678899999988665544332 78999999999997653 111111236889999999999987 24344556
Q ss_pred CcCCcEEEccCCCCCCC--cccCCCCCCCEEEeeCCCCcccc--hhhcCCCCCcEEecccCCCCCCcChhh------hCC
Q 001553 278 LVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFP--EELGKLTKLRLLDLTNCFHLKVIAPNV------IAS 347 (1055)
Q Consensus 278 L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~~------i~~ 347 (1055)
.++|..|+|.+|....+ ....-++.|+.|||++|.+...+ ..++.++.|+.|+++.| ++.++..-. -..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcc
Confidence 78999999999963322 55677899999999999888777 56899999999999998 676653211 245
Q ss_pred CCCCCEEEcccCcccccccccCCcccccccCcccCCCCCCCCEEEeecCCCC
Q 001553 348 FTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (1055)
Q Consensus 348 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (1055)
..+|+.|++..|++.. -.....+..+++|+.|.+.++.+.
T Consensus 300 f~kL~~L~i~~N~I~~------------w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRD------------WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCcccc------------ccccchhhccchhhhhhccccccc
Confidence 7899999999998842 245667777888888887776543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=9.9e-07 Score=69.89 Aligned_cols=57 Identities=35% Similarity=0.553 Sum_probs=29.0
Q ss_pred CCCEEEeeCCCCcccch-hhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccC
Q 001553 302 NLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359 (1055)
Q Consensus 302 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 359 (1055)
+|++|++++|+++.+|. .+..+++|++|++++| .++.++++.+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 34555555555555542 3445555555555555 455555444555555555555544
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=4.6e-06 Score=90.79 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=20.2
Q ss_pred CCcccEEEEecCCccceecccchhhhccccCeEEEeccccccee
Q 001553 677 FQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVI 720 (1055)
Q Consensus 677 ~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i 720 (1055)
+.++++|+|++| .++.+|. -.++|++|.+++|.+++.+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTL 88 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccC
Confidence 355666666666 4555431 1234666666666555443
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=5.4e-06 Score=99.27 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=86.4
Q ss_pred CCcEEEccCCCCC-cCCcccccCcCCcEEEccCCCCC-CC-cccCCCCCCCEEEeeCCCCc-ccchhhcCCCCCcEEecc
Q 001553 257 ELKVVDLTNMQLF-SLPSSIDLLVNLQTLCLDYSTLG-DI-TIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLT 332 (1055)
Q Consensus 257 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~ 332 (1055)
.++.|+|+++.+. .+|..++++.+|++|+|++|.+. .+ ..++.+.+|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778899999887 58889999999999999999887 45 57999999999999999887 688899999999999999
Q ss_pred cCCCCCCcChhhhCC-CCCCCEEEcccCccc
Q 001553 333 NCFHLKVIAPNVIAS-FTRLEELYMSNCFVE 362 (1055)
Q Consensus 333 ~~~~l~~~p~~~i~~-L~~L~~L~l~~~~~~ 362 (1055)
+|...+.+|.. ++. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 99545577776 554 456778888877644
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=2.9e-07 Score=105.20 Aligned_cols=152 Identities=24% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCCcccCCCCCCCEE
Q 001553 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL 306 (1055)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L 306 (1055)
.+++|..|++.+|.+. ++... +..+.+|++|++++|.|..+ ..+..+..|+.|++++|.|+.+..+..+.+|+.+
T Consensus 93 ~~~~l~~l~l~~n~i~---~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE---KIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccchh---hcccc-hhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccCCccchhhhcc
Confidence 4555555555555544 33321 24455666666666665555 2355555566666666666555555556666666
Q ss_pred EeeCCCCcccchh-hcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEcccCcccccccccCCcccccccCcccCCCC
Q 001553 307 SLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL 385 (1055)
Q Consensus 307 ~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (1055)
++++|.+..+... +..+.+|+.+++.+| .+..+.. +..+..+..+++..|.+.. ...+..+
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n~i~~---------------~~~l~~~ 229 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDNKISK---------------LEGLNEL 229 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhccccccee---------------ccCcccc
Confidence 6666655555432 355555555555555 3333321 2233333333444443321 2223333
Q ss_pred CC--CCEEEeecCCCCCC
Q 001553 386 PR--LTTLEIAVENDNAL 401 (1055)
Q Consensus 386 ~~--L~~L~l~~~~~~~~ 401 (1055)
.. |+.+.+.++.+...
T Consensus 230 ~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRISRS 247 (414)
T ss_pred hhHHHHHHhcccCccccc
Confidence 33 67777777776655
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=5.6e-06 Score=99.16 Aligned_cols=105 Identities=23% Similarity=0.246 Sum_probs=86.3
Q ss_pred CCcEEEccCCCCC-CC-cccCCCCCCCEEEeeCCCCc-ccchhhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEc
Q 001553 280 NLQTLCLDYSTLG-DI-TIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYM 356 (1055)
Q Consensus 280 ~Lr~L~L~~~~i~-~l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 356 (1055)
.++.|+|++|.+. .+ ..++++.+|++|+|++|.+. .+|..++++++|++|++++|.-.+.+|.. +++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999999987 34 78999999999999999987 78999999999999999999433467765 899999999999
Q ss_pred ccCcccccccccCCcccccccCcccCCCC-CCCCEEEeecCCC
Q 001553 357 SNCFVEWKVEDEGSSSKKSKASLDELMPL-PRLTTLEIAVEND 398 (1055)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 398 (1055)
++|.+.. ..+..++.+ .++..+++.+|..
T Consensus 498 s~N~l~g-------------~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSG-------------RVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccc-------------cCChHHhhccccCceEEecCCcc
Confidence 9998874 555666553 4677888887764
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=6.2e-08 Score=108.20 Aligned_cols=180 Identities=19% Similarity=0.201 Sum_probs=129.7
Q ss_pred cCCceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCCC-------CCCcChhhhcCCCCCcEEEccCCCCCcCCccccc
Q 001553 206 LKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSV-------DVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDL 277 (1055)
Q Consensus 206 ~~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~-------~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 277 (1055)
++.+|++-+.++++....-.. --..|+.|..++.-... .+.+..+. .-..|.+.+.++|.+..+.+++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 568888888888775532221 12234444433221000 00111111 123577888899998888888999
Q ss_pred CcCCcEEEccCCCCCCCcccCCCCCCCEEEeeCCCCcccch-hhcCCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEc
Q 001553 278 LVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYM 356 (1055)
Q Consensus 278 L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 356 (1055)
+.+|+.|||++|++.....+..+.+|++|||++|.++.+|. +.... +|+.|++++| .++.+-. |.+|++|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh--HHhhhhhhccch
Confidence 99999999999999999999999999999999999998884 23333 4999999999 7887753 899999999999
Q ss_pred ccCcccccccccCCcccccccCcccCCCCCCCCEEEeecCCCCCCCc
Q 001553 357 SNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (1055)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (1055)
++|-+.. ...+.-|..+..|+.|.+.||.+..-|.
T Consensus 262 syNll~~------------hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 262 SYNLLSE------------HSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hHhhhhc------------chhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 9987764 3445566777789999999998665543
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.99 E-value=3.8e-07 Score=107.93 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=70.3
Q ss_pred cCCcccEEEEecCCccceecccchhhhccccCeEEEecc-cccceeccccccCCCCCccccccccccccccCCcccccCC
Q 001553 676 CFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNC-TGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYP 754 (1055)
Q Consensus 676 ~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c-~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 754 (1055)
.+++|+.|.+.+|..++..........++.|++|++++| ......+. ........+++|+.|++++|..+++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL----LLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh----HhhhhhhhcCCcCccchhhhhccCchhH
Confidence 467888888888888776443445677888888888874 22211110 0011223346667777776665444332
Q ss_pred CCCCCCCCCccEEEEccCCCccccccccccccccccccccCCCCCccccccccCCcceeeecccccc
Q 001553 755 GLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIM 821 (1055)
Q Consensus 755 ~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 821 (1055)
...+..|++|+.|.+.+|..++.. ++..+...+++|++|+++.|...
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~--------------------gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDE--------------------GLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchh--------------------HHHHHHHhcCcccEEeeecCccc
Confidence 222224677777777777664433 34444455666666666666553
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7.3e-06 Score=59.15 Aligned_cols=40 Identities=38% Similarity=0.546 Sum_probs=24.3
Q ss_pred CCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCCcc
Q 001553 257 ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITI 296 (1055)
Q Consensus 257 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~ 296 (1055)
+|++|++++|.|..+|..+++|++|++|++++|.++.++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 5666666666666666666666666666666666655433
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=1.1e-06 Score=100.37 Aligned_cols=128 Identities=24% Similarity=0.344 Sum_probs=100.4
Q ss_pred CCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCCcccCCCCCCCEEE
Q 001553 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILS 307 (1055)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~ 307 (1055)
+..+..+.+..|.+. .+-.. +..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|+
T Consensus 71 l~~l~~l~l~~n~i~---~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA---KILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhh---hhhcc-cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence 344555555555443 32222 37789999999999999988666888999999999999999999999999999999
Q ss_pred eeCCCCcccchhhcCCCCCcEEecccCCCCCCcCh-hhhCCCCCCCEEEcccCccc
Q 001553 308 LIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVE 362 (1055)
Q Consensus 308 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~ 362 (1055)
+++|.++.++ ++..+++|+.+++++| .+..+.. . ...+.+++.+.+.+|.+.
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 9999888775 5666899999999999 6777765 2 367888888888888765
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=5.8e-07 Score=90.24 Aligned_cols=184 Identities=21% Similarity=0.175 Sum_probs=109.0
Q ss_pred CCcceeeeccccccccc-cCCCCCCccCCCccEEEEecCCCCcccHHHHHHhcCCceEEeecc-cceeeecc--Cccccc
Q 001553 808 PNLEELGLSIKDIMMLL-QGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFC-SYKELFSN--GGQVHL 883 (1055)
Q Consensus 808 ~~L~~L~l~~~~~~~~~-~~~~~~~~~l~sL~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~c-~l~~~~~~--~~~l~~ 883 (1055)
..|+.||++...++... ... +..+.+|+.|.+.++.++.--...+..-.+|+.|+|++| ++++-... ...++.
T Consensus 185 sRlq~lDLS~s~it~stl~~i---Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGI---LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHH---HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 45888888887765421 111 335677888888776666544445556677888888888 44432111 133777
Q ss_pred cceEEccccccccccccCCcccCcccccccCEEEEccCCCc---ccccchhhhcCcccccEEEEeccccceeeccccccc
Q 001553 884 IKKLELICLNDLEYLWIPNSKMGDSILQNLEILKVDSCQKL---MNLVTPSGAKSLVRLESLTIYGCSAMTQVVISEGDA 960 (1055)
Q Consensus 884 L~~L~l~~c~~L~~l~~~~~~~~~~~~~~L~~L~i~~C~~l---~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~ 960 (1055)
|++|+|+-|...+...- -.-.+--+.|+.|+++||.+- .++ ......++.|.+|++++|..++.-...
T Consensus 262 L~~LNlsWc~l~~~~Vt---v~V~hise~l~~LNlsG~rrnl~~sh~--~tL~~rcp~l~~LDLSD~v~l~~~~~~---- 332 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVT---VAVAHISETLTQLNLSGYRRNLQKSHL--STLVRRCPNLVHLDLSDSVMLKNDCFQ---- 332 (419)
T ss_pred HhhcCchHhhccchhhh---HHHhhhchhhhhhhhhhhHhhhhhhHH--HHHHHhCCceeeeccccccccCchHHH----
Confidence 88888877764433200 001123456888888887542 222 445567888888888888776541111
Q ss_pred cccccceeccccceeecccccccccccCCCccccCCCCCEEEEccCCC
Q 001553 961 AAAKEEIVFIKLKSLDLHHLDSLTSFSSGNYTFRFPSLEYLCVIGCPK 1008 (1055)
Q Consensus 961 ~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~Cp~ 1008 (1055)
+...++.|++|.++.|-.+----.- .....|+|.+|++.||-.
T Consensus 333 ----~~~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 333 ----EFFKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ----HHHhcchheeeehhhhcCCChHHee-eeccCcceEEEEeccccC
Confidence 2234788888888888755211100 111457888888888743
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=2.2e-05 Score=56.61 Aligned_cols=39 Identities=38% Similarity=0.585 Sum_probs=24.0
Q ss_pred CCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcC
Q 001553 302 NLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIA 341 (1055)
Q Consensus 302 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p 341 (1055)
+|++|++++|+++.+|..+++|++|++|++++| .++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 566666666666666666666666666666666 555554
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.82 E-value=7.4e-07 Score=105.49 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=41.3
Q ss_pred cCccccccccccc-ccccccCCCCccCCcccEEEEecCCccceecccchhhhccccCeEEEeccccc
Q 001553 652 LPNLEALELCEIN-VKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGL 717 (1055)
Q Consensus 652 ~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l 717 (1055)
+++|+.|+++.+. +++.....+...+++|+.|.+.+|..+++.....+...+++|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3455555555553 33332222223467788888777877766666666677788888888887765
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.3e-06 Score=87.69 Aligned_cols=164 Identities=18% Similarity=0.111 Sum_probs=101.0
Q ss_pred ccCcccccccccccccccccCCCCccCCcccEEEEecCCccceecccchhhhccccCeEEEecccccceeccccccCCCC
Q 001553 651 VLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEP 730 (1055)
Q Consensus 651 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 730 (1055)
.+.+|+.|.+.|+.+.+-....+. .-.+|+.|+|+.|..++.-...-++.+|+.|.+|+|+.|........ ..
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt------v~ 280 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT------VA 280 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh------HH
Confidence 356677777777655432211122 34679999999999988766666788999999999999975543321 11
Q ss_pred CccccccccccccccCCc-ccccCCCCCCCCCCCccEEEEccCCCccccccccccccccccccccCCCCCccccccccCC
Q 001553 731 PCFAFRRVTNISLCHLPE-LTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPN 809 (1055)
Q Consensus 731 ~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1055)
....-++|+.|+|++|.. +..--.......||.|.+|++++|..++.- .+..-..++.
T Consensus 281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~---------------------~~~~~~kf~~ 339 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND---------------------CFQEFFKFNY 339 (419)
T ss_pred HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch---------------------HHHHHHhcch
Confidence 112346788999988763 221111112226899999999999777541 2222234788
Q ss_pred cceeeeccccccccccCCCCCCccCCCccEEEEec
Q 001553 810 LEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRD 844 (1055)
Q Consensus 810 L~~L~l~~~~~~~~~~~~~~~~~~l~sL~~L~l~~ 844 (1055)
|++|.++.|.... |+.+-.+...++|..|++.+
T Consensus 340 L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 340 LQHLSLSRCYDII--PETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred heeeehhhhcCCC--hHHeeeeccCcceEEEEecc
Confidence 9999999987652 22222133444555555544
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=1.5e-05 Score=94.94 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=60.3
Q ss_pred CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCC---CcccCCCCCC
Q 001553 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNL 303 (1055)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~---l~~i~~L~~L 303 (1055)
.+|.||+|.+.+-.... .-...++.++++|+.||+|++++..+ .++++|++|++|.+++=.+.. +..+..|++|
T Consensus 146 ~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 56677777766643221 11123445677777777777777766 667777777777766655542 2566667777
Q ss_pred CEEEeeCCCCcccch-------hhcCCCCCcEEecccC
Q 001553 304 EILSLIESDIVEFPE-------ELGKLTKLRLLDLTNC 334 (1055)
Q Consensus 304 ~~L~L~~~~l~~lp~-------~i~~L~~L~~L~l~~~ 334 (1055)
++||+|......-+. .-..|++||.||.|+.
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 777776653322221 1123566666666554
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=2.9e-05 Score=92.56 Aligned_cols=132 Identities=20% Similarity=0.237 Sum_probs=93.9
Q ss_pred CCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCc--CCcccccCcCCcEEEccCCCCCCCcccCCCCCCCEE
Q 001553 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS--LPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL 306 (1055)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L 306 (1055)
.+|+.|++.|... +....|..+...+++||.|.+++-.+.. +-.-..++++|+.||+|+++++.+.++++|+|||+|
T Consensus 122 ~nL~~LdI~G~~~-~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSEL-FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccch-hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 4567777776432 2235667777789999999999977642 334466788999999999999999999999999999
Q ss_pred EeeCCCCcccc--hhhcCCCCCcEEecccCCCCCCcChh------hhCCCCCCCEEEcccCccc
Q 001553 307 SLIESDIVEFP--EELGKLTKLRLLDLTNCFHLKVIAPN------VIASFTRLEELYMSNCFVE 362 (1055)
Q Consensus 307 ~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~------~i~~L~~L~~L~l~~~~~~ 362 (1055)
.+.+=.+..-. ..+.+|++|++||+|....... +.- .-..|++|+.|+.++..+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchh
Confidence 99886555322 4678899999999998743322 210 0123667777776655543
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.64 E-value=1.4e-05 Score=82.82 Aligned_cols=182 Identities=19% Similarity=0.210 Sum_probs=123.0
Q ss_pred CceEEEeecCCCCC--CC---CCC-CCCCccEEEccCCCCCCCC--CcCh--------hhhcCCCCCcEEEccCCCCCcC
Q 001553 208 KCYAISWIDSSGGE--LP---EGL-ECPQLELLLLSSEHSSVDV--NIPQ--------RFFTGMRELKVVDLTNMQLFSL 271 (1055)
Q Consensus 208 ~~~~l~l~~~~~~~--l~---~~~-~~~~Lr~L~l~~~~~~~~~--~l~~--------~~~~~l~~Lr~L~L~~~~i~~l 271 (1055)
+++.+++++|.++. ++ ..+ .+..|+.|.+.+|.....+ .+.. .....-..|||+...+|.+..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 56777777776531 11 112 5778888888888654211 1111 1114567899999999988643
Q ss_pred C-----cccccCcCCcEEEccCCCCCC-----C-cccCCCCCCCEEEeeCCCCc-----ccchhhcCCCCCcEEecccCC
Q 001553 272 P-----SSIDLLVNLQTLCLDYSTLGD-----I-TIIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCF 335 (1055)
Q Consensus 272 p-----~~i~~L~~Lr~L~L~~~~i~~-----l-~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 335 (1055)
+ ..|...+.|+.+.++.|.|.. + ..+..++||++|||+.|-++ .+-..++.+++|+.|++++|
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc- 251 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC- 251 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-
Confidence 3 356777889999999988752 2 67889999999999998665 34556778889999999998
Q ss_pred CCCCcChhhh-----CCCCCCCEEEcccCcccccccccCCcccccccCcccCCCCCCCCEEEeecCCCC
Q 001553 336 HLKVIAPNVI-----ASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (1055)
Q Consensus 336 ~l~~~p~~~i-----~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (1055)
.++.-....+ ...++|++|.+.+|.+... ........+...+.|..|++++|...
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d---------a~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRD---------AALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHH---------HHHHHHHHHhcchhhHHhcCCccccc
Confidence 5654332111 3478999999999987631 01123344566888999999988763
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=1.2e-06 Score=98.23 Aligned_cols=121 Identities=27% Similarity=0.199 Sum_probs=54.0
Q ss_pred ceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEcc
Q 001553 209 CYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD 287 (1055)
Q Consensus 209 ~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~ 287 (1055)
+..++...|.+..+...+ -++.|+.|+|+.|... ++. .+..+.+|+.|||++|.+..+|.-=-.=.+|+.|+++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~---~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFT---KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh---hhH--HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 334444444443333333 3344555555555433 221 2345555555555555555444311111125555555
Q ss_pred CCCCCCCcccCCCCCCCEEEeeCCCCcccc--hhhcCCCCCcEEecccC
Q 001553 288 YSTLGDITIIGKLKNLEILSLIESDIVEFP--EELGKLTKLRLLDLTNC 334 (1055)
Q Consensus 288 ~~~i~~l~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~ 334 (1055)
+|.++.+.++.+|++|+.||+++|-+.... .-++.|..|+.|.|.||
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 555555555555555555555555332111 12344445555555554
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.27 E-value=2.3e-05 Score=69.84 Aligned_cols=88 Identities=20% Similarity=0.246 Sum_probs=42.9
Q ss_pred CCCCCcEEEccCCCCCcCCcccccCc-CCcEEEccCCCCCCC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEec
Q 001553 254 GMRELKVVDLTNMQLFSLPSSIDLLV-NLQTLCLDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDL 331 (1055)
Q Consensus 254 ~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 331 (1055)
+-.+|...+|++|.++++|+.|.... -+.+|++.+|.++.+ ..+..+..|+.|+++.|.+...|..|..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 33444445555555555554443322 444555555554444 3344555555555555555555555555555555555
Q ss_pred ccCCCCCCcCh
Q 001553 332 TNCFHLKVIAP 342 (1055)
Q Consensus 332 ~~~~~l~~~p~ 342 (1055)
.++ ....+|-
T Consensus 131 ~~n-a~~eid~ 140 (177)
T KOG4579|consen 131 PEN-ARAEIDV 140 (177)
T ss_pred CCC-ccccCcH
Confidence 554 3444443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=2e-05 Score=70.11 Aligned_cols=107 Identities=17% Similarity=0.264 Sum_probs=86.9
Q ss_pred eEEEeecCCCCCCCCCC----CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEE
Q 001553 210 YAISWIDSSGGELPEGL----ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC 285 (1055)
Q Consensus 210 ~~l~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~ 285 (1055)
..++++.+.+..+++.. +...|...++++|.+. ++|+.+-.+++.+..|++++|.|..+|..+..++.||.|+
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk---~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK---KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhh---hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 34455555554444332 5667888899999877 8888887788899999999999999999999999999999
Q ss_pred ccCCCCCCC-cccCCCCCCCEEEeeCCCCcccchh
Q 001553 286 LDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEE 319 (1055)
Q Consensus 286 L~~~~i~~l-~~i~~L~~L~~L~L~~~~l~~lp~~ 319 (1055)
++.|.+... ..|..|++|-+|+..++.+..+|..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 999998865 7788899999999999988888765
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=6.3e-05 Score=75.97 Aligned_cols=87 Identities=21% Similarity=0.304 Sum_probs=51.6
Q ss_pred CCCCCCEEEeeCCCCccc---chhhcCCCCCcEEecccCCCCCCcChhhh-CCCCCCCEEEcccCcccccccccCCcccc
Q 001553 299 KLKNLEILSLIESDIVEF---PEELGKLTKLRLLDLTNCFHLKVIAPNVI-ASFTRLEELYMSNCFVEWKVEDEGSSSKK 374 (1055)
Q Consensus 299 ~L~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~~p~~~i-~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 374 (1055)
...+++.|||.+|.+... -.-+.+|+.|++|+++.| .+...-.. . ..+++|++|.+.+..+.|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~-lp~p~~nl~~lVLNgT~L~w----------- 135 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKS-LPLPLKNLRVLVLNGTGLSW----------- 135 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCcccc-CcccccceEEEEEcCCCCCh-----------
Confidence 345667777777766533 223456777777777777 33221111 1 244677777777777766
Q ss_pred cccCcccCCCCCCCCEEEeecCCCC
Q 001553 375 SKASLDELMPLPRLTTLEIAVENDN 399 (1055)
Q Consensus 375 ~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (1055)
...-..+..++.++.|+++.|+.+
T Consensus 136 -~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 136 -TQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred -hhhhhhhhcchhhhhhhhccchhh
Confidence 233445666777777777766543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.22 E-value=0.00054 Score=65.78 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=26.7
Q ss_pred cCCCCCcEEEccCCCCCcCCccccc-CcCCcEEEccCCCCCCC---cccCCCCCCCEEEeeCCCCc
Q 001553 253 TGMRELKVVDLTNMQLFSLPSSIDL-LVNLQTLCLDYSTLGDI---TIIGKLKNLEILSLIESDIV 314 (1055)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~Lr~L~L~~~~i~~l---~~i~~L~~L~~L~L~~~~l~ 314 (1055)
..+..|..|.+.+|.|..+-..+.. +.+|.+|.+.+|.|..+ ..+..++.|++|.+-+|.++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 4444444555555444443333322 22344444444444332 33344444444444444433
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.0007 Score=65.01 Aligned_cols=104 Identities=28% Similarity=0.341 Sum_probs=58.1
Q ss_pred CCcEEEccCCCCCCCcccCCCCCCCEEEeeCCCCcccchhhcC-CCCCcEEecccCCCCCCcCh-hhhCCCCCCCEEEcc
Q 001553 280 NLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGK-LTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMS 357 (1055)
Q Consensus 280 ~Lr~L~L~~~~i~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~-L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~ 357 (1055)
+.-.+||++|.+..+..|-.+.+|.+|.+.+|+|+.+-..+.. +++|+.|.+.+| .+..+.. .-+..++.|+.|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 4556666666666666666666666666666666666555544 345666666666 4433311 114556666666666
Q ss_pred cCcccccccccCCcccccccCcccCCCCCCCCEEEee
Q 001553 358 NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIA 394 (1055)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 394 (1055)
+|.+.. +.....--+..+++|+.|+..
T Consensus 122 ~Npv~~----------k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVEH----------KKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchhc----------ccCceeEEEEecCcceEeehh
Confidence 665432 112223335566667766655
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.97 E-value=0.00026 Score=73.60 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=49.2
Q ss_pred hcCCCCCcEEEccCCCCCc-----CCcccccCcCCcEEEccCCCCCC-----C-cccCCCCCCCEEEeeCCCCc-----c
Q 001553 252 FTGMRELKVVDLTNMQLFS-----LPSSIDLLVNLQTLCLDYSTLGD-----I-TIIGKLKNLEILSLIESDIV-----E 315 (1055)
Q Consensus 252 ~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~~-----l-~~i~~L~~L~~L~L~~~~l~-----~ 315 (1055)
|+..+.|..+.++.|.|.. +-..+..++||++|||++|.++. + ..+..+++|+.|++++|.+. .
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 4444555555555554431 22344455555555555555431 2 33444455555555555433 1
Q ss_pred cchhh-cCCCCCcEEecccCCCCCCcC----hhhhCCCCCCCEEEcccCcc
Q 001553 316 FPEEL-GKLTKLRLLDLTNCFHLKVIA----PNVIASFTRLEELYMSNCFV 361 (1055)
Q Consensus 316 lp~~i-~~L~~L~~L~l~~~~~l~~~p----~~~i~~L~~L~~L~l~~~~~ 361 (1055)
+-..+ ...++|++|.+.+| .++.-. ...++..+.|..|++++|.+
T Consensus 261 ~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 22222 12455555555555 222110 01134455555555555554
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.93 E-value=0.00016 Score=72.21 Aligned_cols=92 Identities=28% Similarity=0.287 Sum_probs=58.2
Q ss_pred CCCCCcEEEccCCCCCc-----CCcccccCcCCcEEEccCCCCC-----------CC-cccCCCCCCCEEEeeCCCCc-c
Q 001553 254 GMRELKVVDLTNMQLFS-----LPSSIDLLVNLQTLCLDYSTLG-----------DI-TIIGKLKNLEILSLIESDIV-E 315 (1055)
Q Consensus 254 ~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~-----------~l-~~i~~L~~L~~L~L~~~~l~-~ 315 (1055)
-+..+..++||+|.|.. +...|.+-++|+..+++.-... .+ +.+-++++|+..+|+.|-+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46667777777777652 4445566667777777653211 12 55677788888888887443 2
Q ss_pred cc----hhhcCCCCCcEEecccCCCCCCcChhhhC
Q 001553 316 FP----EELGKLTKLRLLDLTNCFHLKVIAPNVIA 346 (1055)
Q Consensus 316 lp----~~i~~L~~L~~L~l~~~~~l~~~p~~~i~ 346 (1055)
.| +.|++-+.|.||.+++| +++.+..+-||
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rig 141 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIG 141 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCccchhHHH
Confidence 22 34677788888888888 67666544344
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00075 Score=68.48 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=62.2
Q ss_pred EEEeecCCCCCCCCCC----CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCccc-ccCcCCcEEE
Q 001553 211 AISWIDSSGGELPEGL----ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLC 285 (1055)
Q Consensus 211 ~l~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~Lr~L~ 285 (1055)
-+.+.++.+....... .++.++.+++.+|.++-...| ..++.++++|++|+++.|.+...-++. ..+.+|++|-
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHH-HHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 3444455554444332 567778888888765522122 245577888888888888655321222 3456788888
Q ss_pred ccCCCCC--CC-cccCCCCCCCEEEeeCCCCc
Q 001553 286 LDYSTLG--DI-TIIGKLKNLEILSLIESDIV 314 (1055)
Q Consensus 286 L~~~~i~--~l-~~i~~L~~L~~L~L~~~~l~ 314 (1055)
|.++.+. .. ..+..++.++.|.++.|+++
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 8887754 33 55666777777777766443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.90 E-value=0.004 Score=62.79 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=27.0
Q ss_pred CCCCCcEEEccCCCC--C-cCCcccccCcCCcEEEccCCCCCCC---cccCCCCCCCEEEeeCCCCc
Q 001553 254 GMRELKVVDLTNMQL--F-SLPSSIDLLVNLQTLCLDYSTLGDI---TIIGKLKNLEILSLIESDIV 314 (1055)
Q Consensus 254 ~l~~Lr~L~L~~~~i--~-~lp~~i~~L~~Lr~L~L~~~~i~~l---~~i~~L~~L~~L~L~~~~l~ 314 (1055)
.+.+|+.|.++.|+. . .++-..-++++|++|++++|+|+.+ ....++.+|..|++..|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 344555555555522 1 2333333335555555555554432 33344444445555554333
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.00057 Score=68.65 Aligned_cols=99 Identities=20% Similarity=0.194 Sum_probs=54.9
Q ss_pred CCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCCcccCCCCCCCEEEeeCCCCcccc--hhhcCCCCCcEEeccc
Q 001553 256 RELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFP--EELGKLTKLRLLDLTN 333 (1055)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~ 333 (1055)
.+.+.|++-++.+..+ .-..+++.|++|.|+-|.|+.+..+..+++|+.|+|+.|.|..+- ..+.++++||+|-|..
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3444455555555443 123345555566666666655555666666666666666555443 3456777777777766
Q ss_pred CCCCCCcCh----hhhCCCCCCCEEE
Q 001553 334 CFHLKVIAP----NVIASFTRLEELY 355 (1055)
Q Consensus 334 ~~~l~~~p~----~~i~~L~~L~~L~ 355 (1055)
|.-.+.-+. .++.-|++|++|+
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 644433332 2345567777765
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.48 E-value=0.007 Score=61.12 Aligned_cols=89 Identities=21% Similarity=0.202 Sum_probs=66.2
Q ss_pred ccCCceEEEeecCCCCCCCCCCCCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCC--cccccCcCCc
Q 001553 205 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP--SSIDLLVNLQ 282 (1055)
Q Consensus 205 ~~~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~Lr 282 (1055)
....+.++++.+..+..+.....+++|+.|.++.|+.+....++.-+ .++.+|++|++++|+|..+- ..+.++.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34456677777777777777778999999999999555444555444 66799999999999987421 2356788899
Q ss_pred EEEccCCCCCCC
Q 001553 283 TLCLDYSTLGDI 294 (1055)
Q Consensus 283 ~L~L~~~~i~~l 294 (1055)
.|++..|....+
T Consensus 120 ~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 120 SLDLFNCSVTNL 131 (260)
T ss_pred hhhcccCCcccc
Confidence 999999876543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.04 E-value=0.0092 Score=35.66 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=12.1
Q ss_pred CCCEEEeeCCCCcccchhhcC
Q 001553 302 NLEILSLIESDIVEFPEELGK 322 (1055)
Q Consensus 302 ~L~~L~L~~~~l~~lp~~i~~ 322 (1055)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.0011 Score=66.54 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=61.1
Q ss_pred cCcCCcEEEccCCCCCCCcccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEecccCCCCCCcCh-hhhCCCCCCCEEE
Q 001553 277 LLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELY 355 (1055)
Q Consensus 277 ~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~ 355 (1055)
.|.+.+.|+.-+|.+..+.-+.+|..|++|.|+-|+|+.+ ..+..+++|+.|+|..| .+..+.. ..+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 3556777888888888888888888888888888888877 34777888888888887 5665543 1245677777777
Q ss_pred cccCcc
Q 001553 356 MSNCFV 361 (1055)
Q Consensus 356 l~~~~~ 361 (1055)
|..|..
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 766654
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.71 E-value=0.085 Score=49.13 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=14.7
Q ss_pred CcChhhhcCCCCCcEEEccCCCCCcCCc-ccccCcCCcEEEcc
Q 001553 246 NIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLD 287 (1055)
Q Consensus 246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~ 287 (1055)
.++...|..+..|+.+.+..+ +..++. .|.....|+.+.+.
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444444444444444442 333322 23343344444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.65 E-value=0.011 Score=35.35 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCcEEEccCCCCCcCCccccc
Q 001553 257 ELKVVDLTNMQLFSLPSSIDL 277 (1055)
Q Consensus 257 ~Lr~L~L~~~~i~~lp~~i~~ 277 (1055)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777776654
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.43 E-value=0.035 Score=56.01 Aligned_cols=141 Identities=19% Similarity=0.211 Sum_probs=92.2
Q ss_pred ccccCcCCcEEEccCCCCC-----CC-cccCCCCCCCEEEeeCCCC---c-ccch-------hhcCCCCCcEEecccCCC
Q 001553 274 SIDLLVNLQTLCLDYSTLG-----DI-TIIGKLKNLEILSLIESDI---V-EFPE-------ELGKLTKLRLLDLTNCFH 336 (1055)
Q Consensus 274 ~i~~L~~Lr~L~L~~~~i~-----~l-~~i~~L~~L~~L~L~~~~l---~-~lp~-------~i~~L~~L~~L~l~~~~~ 336 (1055)
.+..+..+..++||+|.|. .+ ..|.+-.+|++.+++.-.. . .+|+ .+-++++|+..++|+|..
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3445778999999999986 34 6688889999999887421 1 3333 467889999999999943
Q ss_pred CCCcCh---hhhCCCCCCCEEEcccCcccccccccCCcccc---cccCcccCCCCCCCCEEEeecCCCCCCCccc-----
Q 001553 337 LKVIAP---NVIASFTRLEELYMSNCFVEWKVEDEGSSSKK---SKASLDELMPLPRLTTLEIAVENDNALPEGF----- 405 (1055)
Q Consensus 337 l~~~p~---~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----- 405 (1055)
-...|+ +.|++-+.|.||.+++|.+-. ..|.-..+ .-+......+.+.|+...+..|...+.+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp---~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGP---IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCc---cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 334443 346788999999999986541 11100000 0011223456678999888888877776543
Q ss_pred -ccccccEEEEEE
Q 001553 406 -FVRELERFKILI 417 (1055)
Q Consensus 406 -~l~~L~~l~l~~ 417 (1055)
+-.+|+.+++..
T Consensus 182 ~sh~~lk~vki~q 194 (388)
T COG5238 182 ESHENLKEVKIQQ 194 (388)
T ss_pred HhhcCceeEEeee
Confidence 335566666543
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.27 E-value=0.098 Score=48.69 Aligned_cols=107 Identities=15% Similarity=0.308 Sum_probs=65.0
Q ss_pred CcChhhhcCCCCCcEEEccCCCCCcCC-cccccCcCCcEEEccCCCCCCC--cccCCCCCCCEEEeeCCCCcccch-hhc
Q 001553 246 NIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFPE-ELG 321 (1055)
Q Consensus 246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~ 321 (1055)
.+++..|..+.+|+.+.+.. .+..++ ..|....+|+.+.+.++ +..+ ..|.++.+|+.+.+.. .+..++. .+.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 46677889999999999875 566665 45777778999998875 6666 5688887899999866 5555554 456
Q ss_pred CCCCCcEEecccCCCCCCcChhhhCCCCCCCEEEccc
Q 001553 322 KLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358 (1055)
Q Consensus 322 ~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 358 (1055)
..++|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 6888888888653 566766667776 888887654
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.023 Score=55.10 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=48.4
Q ss_pred ccccccccccccccccccccccccCCchhccccceeEEccCCCcccccchhhhhcCCcccEEeeccccch
Q 001553 521 DAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKM 590 (1055)
Q Consensus 521 ~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 590 (1055)
..+++++.|.+.+|..+.+|+...... ..++|+.|+|++|+.+++-.. ..+..+++|+.|.+.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhh
Confidence 446677788888888888877654333 678888888888888877532 34566778888887776544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=0.017 Score=56.01 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=63.7
Q ss_pred cccCEEEEccCCCcccccchhhhcCcccccEEEEeccccceeeccccccccccccceeccccceeecccccccccccCCC
Q 001553 911 QNLEILKVDSCQKLMNLVTPSGAKSLVRLESLTIYGCSAMTQVVISEGDAAAAKEEIVFIKLKSLDLHHLDSLTSFSSGN 990 (1055)
Q Consensus 911 ~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~ 990 (1055)
..++.++.++|.-...- -.-+..+++++.|.+.+|..+....-+- .....++||.|+|++||.+++....-
T Consensus 101 ~~IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck~~dD~~L~~-------l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCKYFDDWCLER-------LGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred ceEEEEecCCchHHHHH--HHHHhccchhhhheeccccchhhHHHHH-------hcccccchheeeccCCCeechhHHHH
Confidence 34677777776533222 3445788899999999998775544322 22357899999999999998875332
Q ss_pred ccccCCCCCEEEEccCCCCccc
Q 001553 991 YTFRFPSLEYLCVIGCPKMKIF 1012 (1055)
Q Consensus 991 ~~~~l~sL~~L~i~~Cp~l~~l 1012 (1055)
...+++|+.|.|++-|.+..+
T Consensus 172 -L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 172 -LLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred -HHHhhhhHHHHhcCchhhhch
Confidence 236889999988888877643
No 76
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.27 E-value=1.3 Score=56.93 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=94.9
Q ss_pred eEecC----CCCHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhCCCchhHHHHHHHHcCCCChHHHHHHHHHhcCCCCC
Q 001553 6 NFSIE----ILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTEN 81 (1055)
Q Consensus 6 ~~~l~----~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLa~~~ig~~L~~~~~~~~W~~~l~~~~~~~~~ 81 (1055)
..+++ +|+.+|+-++|....|....+ +...+|.+.|+|.|+++..++..++...... ......+. .
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~----~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~----~ 245 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPIEA----AESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLA----G 245 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCCCH----HHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhc----C
Confidence 34556 899999999999877643322 3456899999999999999998876542110 11111111 0
Q ss_pred CcccchHHHHHHHHH-HHhcCCchhHHHHHHhhcCCCCCcchHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccc
Q 001553 82 NFHRELGKAYTAIKL-SYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLL 160 (1055)
Q Consensus 82 ~~~~~~~~i~~~L~~-Sy~~L~~~~lk~cfly~~~fp~~~i~~~li~~wia~g~i~~~~~e~~~~~~~~~~~~L~~~sl~ 160 (1055)
.+ ...+...+.- -++.||.+ .+..++..|+++... ..+... +.+..+ + .+.+++|.+++++
T Consensus 246 ~~---~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~--~~l~~~-----l~~~~~---~----~~~L~~l~~~~l~ 307 (903)
T PRK04841 246 IN---ASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMN--DALIVR-----VTGEEN---G----QMRLEELERQGLF 307 (903)
T ss_pred CC---chhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCC--HHHHHH-----HcCCCc---H----HHHHHHHHHCCCe
Confidence 00 1124443333 37899998 899999999997432 233221 111111 1 2348899999986
Q ss_pred c-cCC-CcCeEehhHHHHHHHHHHH
Q 001553 161 L-EGY-SCREFSMHDVVHDVAILIA 183 (1055)
Q Consensus 161 ~-~~~-~~~~~~mHdl~~dla~~~~ 183 (1055)
. +.+ ....|+.|++++++.....
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHH
Confidence 4 332 3457999999999987665
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.98 E-value=0.1 Score=28.79 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=5.6
Q ss_pred CCCEEEeeCCCCcccc
Q 001553 302 NLEILSLIESDIVEFP 317 (1055)
Q Consensus 302 ~L~~L~L~~~~l~~lp 317 (1055)
+|++|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.05 E-value=0.14 Score=28.26 Aligned_cols=16 Identities=50% Similarity=0.798 Sum_probs=7.0
Q ss_pred CCcEEEccCCCCCcCC
Q 001553 257 ELKVVDLTNMQLFSLP 272 (1055)
Q Consensus 257 ~Lr~L~L~~~~i~~lp 272 (1055)
+||+|++++|.+.++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655544
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.96 E-value=0.0054 Score=60.16 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=60.4
Q ss_pred cCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCCCCCEEEeeCCCCcccchhhcCCCCCcEEec
Q 001553 253 TGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDL 331 (1055)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 331 (1055)
..++...+||++.|.+..+-..|+.++.|..|+++.+.+..+ .+++.+..++.+++..|....+|.+++++++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 556777777777777776666777777777777777777766 6677777777777777777777777777777777777
Q ss_pred ccC
Q 001553 332 TNC 334 (1055)
Q Consensus 332 ~~~ 334 (1055)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 666
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.66 E-value=0.012 Score=57.88 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=52.9
Q ss_pred CCCCccEEEccCCCCCCCCCcChhhhcCCCCCcEEEccCCCCCcCCcccccCcCCcEEEccCCCCCCC-cccCCCCCCCE
Q 001553 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEI 305 (1055)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~ 305 (1055)
.++..+.|+++.|... .+-.. |+.+..|..||++.|.+..+|+.++.+..++.+++..|..+.. .++++++++++
T Consensus 40 ~~kr~tvld~~s~r~v---n~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV---NLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHH---hhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 4566666776666433 33322 3556666667777777777777777777777777766666654 66777777777
Q ss_pred EEeeCCCC
Q 001553 306 LSLIESDI 313 (1055)
Q Consensus 306 L~L~~~~l 313 (1055)
+++.++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 77766643
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.78 E-value=0.65 Score=28.95 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=9.4
Q ss_pred CCCCEEEeeCCCCcccchh
Q 001553 301 KNLEILSLIESDIVEFPEE 319 (1055)
Q Consensus 301 ~~L~~L~L~~~~l~~lp~~ 319 (1055)
.+|++|++++|.++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.78 E-value=0.65 Score=28.95 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=9.4
Q ss_pred CCCCEEEeeCCCCcccchh
Q 001553 301 KNLEILSLIESDIVEFPEE 319 (1055)
Q Consensus 301 ~~L~~L~L~~~~l~~lp~~ 319 (1055)
.+|++|++++|.++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.02 E-value=1.1 Score=27.85 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=17.8
Q ss_pred CCCCcEEecccCCCCCCcChhhh
Q 001553 323 LTKLRLLDLTNCFHLKVIAPNVI 345 (1055)
Q Consensus 323 L~~L~~L~l~~~~~l~~~p~~~i 345 (1055)
|++|++|++++| .+..+|.+.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 567899999998 8888887744
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.02 E-value=1.1 Score=27.85 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=17.8
Q ss_pred CCCCcEEecccCCCCCCcChhhh
Q 001553 323 LTKLRLLDLTNCFHLKVIAPNVI 345 (1055)
Q Consensus 323 L~~L~~L~l~~~~~l~~~p~~~i 345 (1055)
|++|++|++++| .+..+|.+.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 567899999998 8888887744
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.47 E-value=1.1 Score=27.94 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=13.2
Q ss_pred CCCCCEEEEccCCCCc
Q 001553 995 FPSLEYLCVIGCPKMK 1010 (1055)
Q Consensus 995 l~sL~~L~i~~Cp~l~ 1010 (1055)
+|+|++|++++|++|.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4788888888888885
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.89 E-value=1.5 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=12.9
Q ss_pred CCcccEEEEecCCcccee
Q 001553 677 FQRLTRLIVWGCQKLKFM 694 (1055)
Q Consensus 677 ~~~L~~L~i~~C~~L~~l 694 (1055)
+++|++|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467778888888777654
No 87
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=71.21 E-value=13 Score=41.00 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=59.7
Q ss_pred cceEecCCCCHHHHHHHHHHHhCC--CCCChhHHHHHHHHHHHhCCCchhHHHHHHHHcCCCChHHHHHHHHHhcCCCCC
Q 001553 4 EANFSIEILNEEEAWRLFEVKLGN--DDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTEN 81 (1055)
Q Consensus 4 ~~~~~l~~L~~~~s~~Lf~~~a~~--~~~~~~l~~~~~~i~~~c~GlPLa~~~ig~~L~~~~~~~~W~~~l~~~~~~~~~ 81 (1055)
+..++++++++++..+++.+.++. ....+ +....|++.|+|.|-.+..+...+ ..|..+.+. ..
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~-----~~ 237 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD-----GV 237 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC-----CC
Confidence 346899999999999999999842 22233 467899999999996555444432 123221100 01
Q ss_pred CcccchHHHHHHHHHHHhcCCchhHHHHHH-hhcCCCCCc
Q 001553 82 NFHRELGKAYTAIKLSYDALKGEQLKKIFQ-LCSLMPKSF 120 (1055)
Q Consensus 82 ~~~~~~~~i~~~L~~Sy~~L~~~~lk~cfl-y~~~fp~~~ 120 (1055)
............+...|..|+..+ +.-+. ....|++..
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~ 276 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGGP 276 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCCc
Confidence 111222334555566677777663 44443 555666433
No 88
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=70.63 E-value=17 Score=38.64 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=42.5
Q ss_pred ceEecCCCCHHHHHHHHHHHh---CCCCCChhHHHHHHHHHHHhCCCchhHHHHHHHH
Q 001553 5 ANFSIEILNEEEAWRLFEVKL---GNDDLIPRMKSTATHIVKECGGLPIAIEPIAKAL 59 (1055)
Q Consensus 5 ~~~~l~~L~~~~s~~Lf~~~a---~~~~~~~~l~~~~~~i~~~c~GlPLa~~~ig~~L 59 (1055)
..+++++++.+|..+++...+ |......=-.+..+.|++.++|.|..|..++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 467899999999999998877 3211111123688899999999999999988876
No 89
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=67.53 E-value=42 Score=36.57 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=38.7
Q ss_pred cceEecCCCCHHHHHHHHHHHhC--CCCCChhHHHHHHHHHHHhCCCchhHHHHHH
Q 001553 4 EANFSIEILNEEEAWRLFEVKLG--NDDLIPRMKSTATHIVKECGGLPIAIEPIAK 57 (1055)
Q Consensus 4 ~~~~~l~~L~~~~s~~Lf~~~a~--~~~~~~~l~~~~~~i~~~c~GlPLa~~~ig~ 57 (1055)
...+++++++++|..+++.+.++ ....++ +....|++.|+|.|-.+..++.
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~---~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEIEP---EAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCcCH---HHHHHHHHHhCCCcchHHHHHH
Confidence 34679999999999999999984 222233 4567899999999977655554
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.89 E-value=6.8 Score=24.52 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=5.9
Q ss_pred CCcEEEccCCCCC
Q 001553 280 NLQTLCLDYSTLG 292 (1055)
Q Consensus 280 ~Lr~L~L~~~~i~ 292 (1055)
+|+.|++++|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444444444443
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=54.28 E-value=8.5 Score=24.01 Aligned_cols=17 Identities=47% Similarity=0.645 Sum_probs=12.5
Q ss_pred CCcEEEccCCCCCcCCc
Q 001553 257 ELKVVDLTNMQLFSLPS 273 (1055)
Q Consensus 257 ~Lr~L~L~~~~i~~lp~ 273 (1055)
+|++|++++|.+..+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777775
No 92
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=40.14 E-value=13 Score=22.49 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=5.0
Q ss_pred CCCCEEEeeCCCC
Q 001553 301 KNLEILSLIESDI 313 (1055)
Q Consensus 301 ~~L~~L~L~~~~l 313 (1055)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3444445444443
No 93
>PF14516 AAA_35: AAA-like domain
Probab=39.25 E-value=1.2e+02 Score=33.49 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=44.1
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhCCCchhHHHHHHHHcCC
Q 001553 2 GSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNK 62 (1055)
Q Consensus 2 ~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLa~~~ig~~L~~~ 62 (1055)
+++..++|++++.+|..+|..++-.+. .+ ...++|....+|.|--+..++..+..+
T Consensus 191 NIg~~i~L~~Ft~~ev~~L~~~~~~~~--~~---~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 191 NIGQPIELPDFTPEEVQELAQRYGLEF--SQ---EQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccccceeCCCCCHHHHHHHHHhhhccC--CH---HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 355688999999999999998765331 11 127889999999999999999999764
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=34.89 E-value=30 Score=21.95 Aligned_cols=13 Identities=38% Similarity=0.485 Sum_probs=7.4
Q ss_pred CCcEEEccCCCCC
Q 001553 257 ELKVVDLTNMQLF 269 (1055)
Q Consensus 257 ~Lr~L~L~~~~i~ 269 (1055)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666553
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=28.68 E-value=1.7 Score=50.22 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=8.3
Q ss_pred CCCCCcEEEccCCCC
Q 001553 254 GMRELKVVDLTNMQL 268 (1055)
Q Consensus 254 ~l~~Lr~L~L~~~~i 268 (1055)
...+++.++++.|.+
T Consensus 170 ~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 170 KNEHLTELDLSLNGL 184 (478)
T ss_pred cccchhHHHHHhccc
Confidence 355555555555554
No 96
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=24.98 E-value=1e+02 Score=37.60 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhCCCchhHHHHHHHHcCCCChHHHHHHHHHhcCCCCCCcccchHHHH
Q 001553 12 LNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAY 91 (1055)
Q Consensus 12 L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLa~~~ig~~L~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~i~ 91 (1055)
++.+|+-++|....|..-+..+ .+.+.+...|=+-|+..++=.++...+.+.--. .+. -..+...+
T Consensus 194 f~~eE~~~fl~~~~~l~Ld~~~----~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~---~Ls-----G~~~~l~d-- 259 (894)
T COG2909 194 FDTEEAAAFLNDRGSLPLDAAD----LKALYDRTEGWAAALQLIALALRNNTSAEQSLR---GLS-----GAASHLSD-- 259 (894)
T ss_pred CChHHHHHHHHHcCCCCCChHH----HHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh---hcc-----chHHHHHH--
Confidence 7889999999877654333333 345666777777777777766663333331111 110 00011111
Q ss_pred HHHHHHHhcCCchhHHHHHHhhcCCCCCcchHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccccc--CCCcCeE
Q 001553 92 TAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLE--GYSCREF 169 (1055)
Q Consensus 92 ~~L~~Sy~~L~~~~lk~cfly~~~fp~~~i~~~li~~wia~g~i~~~~~e~~~~~~~~~~~~L~~~sl~~~--~~~~~~~ 169 (1055)
-...==.+.||.+ +|...+-||+++.. ..+|+.-.-+ ++.+-.++++|-+++++.. .+..+.|
T Consensus 260 YL~eeVld~Lp~~-l~~FLl~~svl~~f--~~eL~~~Ltg------------~~ng~amLe~L~~~gLFl~~Ldd~~~Wf 324 (894)
T COG2909 260 YLVEEVLDRLPPE-LRDFLLQTSVLSRF--NDELCNALTG------------EENGQAMLEELERRGLFLQRLDDEGQWF 324 (894)
T ss_pred HHHHHHHhcCCHH-HHHHHHHHHhHHHh--hHHHHHHHhc------------CCcHHHHHHHHHhCCCceeeecCCCcee
Confidence 0111124789998 89999999988642 1233322211 1112235899999998842 2567899
Q ss_pred ehhHHHHHHHHHHH
Q 001553 170 SMHDVVHDVAILIA 183 (1055)
Q Consensus 170 ~mHdl~~dla~~~~ 183 (1055)
+.|.++.||-..--
T Consensus 325 ryH~LFaeFL~~r~ 338 (894)
T COG2909 325 RYHHLFAEFLRQRL 338 (894)
T ss_pred ehhHHHHHHHHhhh
Confidence 99999999865433
No 97
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=23.29 E-value=5.5e+02 Score=28.95 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=57.0
Q ss_pred ceEecCCCCHHHHHHHHHHHh--C--CCC-CChhHHHHHHHHHHHhCCCchhHHHHHHHH--c---CC--CChHHHHHHH
Q 001553 5 ANFSIEILNEEEAWRLFEVKL--G--NDD-LIPRMKSTATHIVKECGGLPIAIEPIAKAL--R---NK--TESECWKNAL 72 (1055)
Q Consensus 5 ~~~~l~~L~~~~s~~Lf~~~a--~--~~~-~~~~l~~~~~~i~~~c~GlPLa~~~ig~~L--~---~~--~~~~~W~~~l 72 (1055)
..+.+++++.++..+.+..++ + ... .++-++.+++..+...|..+.|+.++-.+. + ++ -+.++++.++
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~ 279 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAY 279 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 356899999999999999987 2 222 333344555545444666888887765432 1 11 2566666666
Q ss_pred HHhcCCCCCCcccchHHHHHHHHHHHhcCCchhHHHHHHh
Q 001553 73 HELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQL 112 (1055)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~lk~cfly 112 (1055)
+... .....-.+..||.+ ++.|++
T Consensus 280 ~~~~--------------~~~~~~~~~~L~~~--~k~~L~ 303 (394)
T PRK00411 280 EKSE--------------IVHLSEVLRTLPLH--EKLLLR 303 (394)
T ss_pred HHHH--------------HHHHHHHHhcCCHH--HHHHHH
Confidence 5542 12334568899987 555554
No 98
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=22.40 E-value=5.7 Score=45.94 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=84.4
Q ss_pred CCCcEEEccCCCCC-----cCCcccccCcCCcEEEccCCCCCC-----C-cc----cCCCCCCCEEEeeCCCCcc-----
Q 001553 256 RELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD-----I-TI----IGKLKNLEILSLIESDIVE----- 315 (1055)
Q Consensus 256 ~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----l-~~----i~~L~~L~~L~L~~~~l~~----- 315 (1055)
..|++|++..+.+. .+.+.+....+++.++++.|.+.. + .. +....++++|++.+|.++.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 45666777766654 355667777888888888887531 1 22 3457788888888886651
Q ss_pred cchhhcCCCC-CcEEecccCCCCCCc-----ChhhhCCC-CCCCEEEcccCcccccccccCCcccccccCcccCCCCCCC
Q 001553 316 FPEELGKLTK-LRLLDLTNCFHLKVI-----APNVIASF-TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRL 388 (1055)
Q Consensus 316 lp~~i~~L~~-L~~L~l~~~~~l~~~-----p~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (1055)
+-..+....+ ++.|++..| .+... .+. +..+ ..++++++..|++.. .........+...+++
T Consensus 224 l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~---------~~~~~L~~~l~~~~~l 292 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASN-KLGDVGVEKLLPC-LSVLSETLRVLDLSRNSITE---------KGVRDLAEVLVSCRQL 292 (478)
T ss_pred HHHHHhccchhhHHHHHHhc-CcchHHHHHHHHH-hcccchhhhhhhhhcCCccc---------cchHHHHHHHhhhHHH
Confidence 2233455555 666888877 44433 122 4445 667888888887763 1112334556667788
Q ss_pred CEEEeecCCCCCC
Q 001553 389 TTLEIAVENDNAL 401 (1055)
Q Consensus 389 ~~L~l~~~~~~~~ 401 (1055)
+.|.++.|.....
T Consensus 293 ~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 293 EELSLSNNPLTDY 305 (478)
T ss_pred HHhhcccCccccH
Confidence 8888887775543
No 99
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=22.07 E-value=1.7e+02 Score=25.22 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=30.7
Q ss_pred CCCCCcchHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhcccccCC
Q 001553 115 LMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGY 164 (1055)
Q Consensus 115 ~fp~~~i~~~li~~wia~g~i~~~~~e~~~~~~~~~~~~L~~~sl~~~~~ 164 (1055)
.||...+..++|.+.+..|-+. +.++|-. +-+.|++.+++..+.
T Consensus 33 ~y~~cFvGsElVdWLi~~g~~~--tR~eAv~----~gq~Ll~~gii~HV~ 76 (93)
T cd04440 33 TYKSVVPASKLVDWLLAQGDCR--TREEAVI----LGVGLCNNGFMHHVL 76 (93)
T ss_pred EcccccchhHHHHHHHHcCCCC--CHHHHHH----HHHHHHhCCCEEecC
Confidence 3444445579999989988655 3455544 368899999998773
Done!