Query 001553
Match_columns 1055
No_of_seqs 374 out of 5418
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 17:28:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001553.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_849-853//hhsearch_pdb/001553hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 362.6 31.8 622 253-1042 74-765 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 335.2 27.8 658 207-1014 50-745 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 320.6 41.0 175 211-403 8-188 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 309.6 39.0 153 206-362 24-184 (680)
5 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 301.2 32.7 146 211-362 15-166 (606)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 295.7 37.3 171 211-399 16-192 (606)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 295.0 33.0 149 233-401 16-168 (606)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 287.1 36.1 154 205-362 30-194 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 271.9 35.8 193 189-399 8-217 (844)
10 2z63_A TOLL-like receptor 4, v 1.0 1 1 267.6 30.8 152 206-361 27-189 (570)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=362.61 Aligned_cols=622 Identities=14% Similarity=0.009 Sum_probs=257.2
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-C-C--CCCCCCCCCEEEEECCCCC-CCCHHH-CCCCCC
Q ss_conf 19998859991189898687000068687599823889999-7-4--4478888889981179896-452221-399987
Q 001553 253 TGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-I-T--IIGKLKNLEILSLIESDIV-EFPEEL-GKLTKL 326 (1055)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-l-~--~i~~L~~L~~L~L~~~~l~-~lp~~i-~~L~~L 326 (1055)
..+++|++++++.+.+..+|..++.+++|++|++++|.+.. + . .++.+.+|++|++++|.+. ..|..+ .++++|
T Consensus 74 ~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred HCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 31680224678688867870332457889989898985787078967872788999898968826774797785638899
Q ss_pred CEEECCCCCCCCCCCHHH---HCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 688410688899748334---27999988999215756652233477664444693338999999799902289999985
Q 001553 327 RLLDLTNCFHLKVIAPNV---IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (1055)
Q Consensus 327 ~~L~l~~~~~l~~~~~~~---l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (1055)
++|++++| .+...++.. ++.+++|++|++++|.+.. ...+..+++|+.|+++++.......
T Consensus 154 ~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~~~~~~l~~L~~L~Ls~n~l~~~~~ 217 (768)
T 3rgz_A 154 EVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISG---------------DVDVSRCVNLEFLDVSSNNFSTGIP 217 (768)
T ss_dssp SEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEES---------------CCBCTTCTTCCEEECCSSCCCSCCC
T ss_pred CEEECCCC-CCCCCCCHHHHHHCCCCCCCEEECCCCCCCC---------------CCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 98989798-3588587155664358988989897880346---------------5784547868989892882788771
Q ss_pred CC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHEEEEECCCCCCHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 22-33566589999738888997101343212344410110000011013303653200100246561799650544692
Q 001553 404 GF-FVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGV 482 (1055)
Q Consensus 404 ~~-~l~~L~~l~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~i~~~~~~~~~~L~~L~L~~~~~~ 482 (1055)
.+ .+.+|+.+.+..... .......+..+++|+.|++.++...
T Consensus 218 ~l~~l~~L~~L~Ls~n~l-------------------------------------~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 218 FLGDCSALQHLDISGNKL-------------------------------------SGDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp BCTTCCSCCEEECCSSCC-------------------------------------CSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred CCCCCCCCCEEECCCCCC-------------------------------------CCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 112699999897948858-------------------------------------7816577744888898989888665
Q ss_pred CHHCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEECCCC
Q ss_conf 01100234235576758984058997054138875577645544510223322533100245770000365546983698
Q 001553 483 KNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCD 562 (1055)
Q Consensus 483 ~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~l~~L~~L~l~~c~ 562 (1055)
. ..+.. .+++|++|++.++.....+. ... ...+++|+.|.+.++.--..+ +...+.+++|+.|.+.+|.
T Consensus 261 ~-~~~~~---~l~~L~~L~L~~n~l~~~ip---~~~-~~~~~~L~~L~Ls~n~l~~~~---p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 261 G-PIPPL---PLKSLQYLSLAENKFTGEIP---DFL-SGACDTLTGLDLSGNHFYGAV---PPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp E-SCCCC---CCTTCCEEECCSSEEEESCC---CCS-CTTCTTCSEEECCSSEEEECC---CGGGGGCTTCCEEECCSSE
T ss_pred C-CCCCC---CCCCCCEEECCCCCCCCCCC---HHH-HHHCCCCCEEECCCCCCCCCC---CHHHHCCCCCCEEECCCCC
T ss_conf 7-16724---36878989791785577258---888-844686889989689677842---3677558776677897885
Q ss_pred CCCCCCCHHHHHCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 84334521333117865288643444226765506888864468887431001320456429997654312389889999
Q 001553 563 ELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMP 642 (1055)
Q Consensus 563 ~L~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~ 642 (1055)
-...++. ..+..+++|++|++.+|.-...++.. +..++
T Consensus 330 l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~~---------------l~~l~-------------------------- 367 (768)
T 3rgz_A 330 FSGELPM-DTLLKMRGLKVLDLSFNEFSGELPES---------------LTNLS-------------------------- 367 (768)
T ss_dssp EEEECCH-HHHTTCTTCCEEECCSSEEEECCCTT---------------HHHHT--------------------------
T ss_pred CCCCCCH-HHHHCCCCCCEEECCCCCCCCCCCHH---------------HHHHH--------------------------
T ss_conf 2573797-88724888878848478437623098---------------98632--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEECCCCCCEECCCCHHHHCCCCCEEEEECCCCCCEEC
Q ss_conf 88767743467632112244333222368997-55776658988067752060431022101445837890233343021
Q 001553 643 PSLFNGKVVLPNLEALELCEINVKSIWHNQTP-CCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVII 721 (1055)
Q Consensus 643 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~i~ 721 (1055)
++|+.|++++|.+.......+. ..+++|+.|.+.+|. ++...+ ..+..+++|+.|++++|. +....
T Consensus 368 ----------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~Ls~N~-l~~~~ 434 (768)
T 3rgz_A 368 ----------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGKIP-PTLSNCSELVSLHLSFNY-LSGTI 434 (768)
T ss_dssp ----------TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE-EEEECC-GGGGGCTTCCEEECCSSE-EESCC
T ss_pred ----------CCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCC-CCCCCC-HHHHCCCCCCEEECCCCC-CCCCC
T ss_conf ----------27719986278747876766653324776189897784-654248-777568987989895884-66854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32456789982013554521112378523337987878899954899714887331246665334554322358998753
Q 001553 722 SEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFF 801 (1055)
Q Consensus 722 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1055)
......+++|+.|.+.++.-...++.... .+++|+.|++++|.--..+|..
T Consensus 435 -------p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~-------------------- 485 (768)
T 3rgz_A 435 -------PSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSG-------------------- 485 (768)
T ss_dssp -------CGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGG--------------------
T ss_pred -------CHHHHCCCCCCEEECCCCCCCCCCCHHHC--CCCCCEEEEECCCCCCCCCCHH--------------------
T ss_conf -------67774499889898978815471897882--8777329990199513758878--------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCE-EEECCCCC
Q ss_conf 20222577513310222101012478988765788647998248998653789987048860786013531-46036740
Q 001553 802 SFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYK-ELFSNGGQ 880 (1055)
Q Consensus 802 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~l~~l~~L~~L~l~~c~l~-~~~~~~~~ 880 (1055)
-..+++|+.|++++|......+.. ...+++|+.|++++|.+.......+..+++|+.|++++|.+. .+|.....
T Consensus 486 --l~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 486 --LSNCTNLNWISLSNNRLTGEIPKW---IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp --GGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred --HHCCCCCCEEECCCCCCCCCCCHH---HHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf --816998998975399518968768---856899998989789433748877708898998989888468827957860
Q ss_pred CCCCCEEECCCC-----------------------------------CCC-------CCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 111056973555-----------------------------------355-------31124776557533465378987
Q 001553 881 VHLIKKLELICL-----------------------------------NDL-------EYLWIPNSKMGDSILQNLEILKV 918 (1055)
Q Consensus 881 l~~L~~L~l~~c-----------------------------------~~L-------~~l~~~~~~~~~~~l~~L~~L~i 918 (1055)
...+..+.+... ... ..+....|. .+..+++|+.|++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~-~~~~l~~L~~LdL 639 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP-TFDNNGSMMFLDM 639 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC-SCSSSBCCCEEEC
T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCH-HHHCCCCCCEEEC
T ss_conf 421223201345421111344432222332221001355632320023211001133100462743-3403356657978
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 05878623556011137345657889234363042223564001446101144253322436553301388832249997
Q 001553 919 DSCQKLMNLVTPSGAKSLVRLESLTIYGCSAMTQVVISEGDAAAAKEEIVFIKLKSLDLHHLDSLTSFSSGNYTFRFPSL 998 (1055)
Q Consensus 919 ~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL 998 (1055)
+++.--..+ |..++.+++|+.|+++++.--..++..... +++|+.|+++++.--..+|.... .+++|
T Consensus 640 s~N~l~g~i--p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~---------L~~L~~LdLs~N~l~g~ip~~l~--~l~~L 706 (768)
T 3rgz_A 640 SYNMLSGYI--PKEIGSMPYLFILNLGHNDISGSIPDEVGD---------LRGLNILDLSSNKLDGRIPQAMS--ALTML 706 (768)
T ss_dssp CSSCCBSCC--CGGGGGCTTCCEEECCSSCCCSCCCGGGGG---------CTTCCEEECCSSCCEECCCGGGG--GCCCC
T ss_pred CCCCCCCCC--CHHHHCCCCCCEEECCCCCCCCCCCHHHHC---------CCCCCEEECCCCCCCCCCCHHHH--CCCCC
T ss_conf 588015558--778841415787848688038878967847---------77899898978802386886775--78878
Q ss_pred CEEEECCCCCCCCCCCCCC----------------CCCCEEEEEECCCCEEECCCCHHHH
Q ss_conf 7799826898742376754----------------5765179970388331037745689
Q 001553 999 EYLCVIGCPKMKIFTAGDL----------------RTLTESVCYGYGHGEWRSDSNINKI 1042 (1055)
Q Consensus 999 ~~L~i~~C~~l~~lp~~~~----------------~~~L~~l~~~~~~~~~~~~~~~~~~ 1042 (1055)
+.|++++|+--..+|.+++ ..||. .|-...+++|++++|+++.
T Consensus 707 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp SEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-------------
T ss_pred CEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf 9787968815560899601024897775698321088776-7888766888988876566
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=335.22 Aligned_cols=658 Identities=15% Similarity=0.059 Sum_probs=337.8
Q ss_pred CCCEEEEEECCCCCC----CCCCC-CCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCC--CCCCC
Q ss_conf 870089921589998----89989-9998539993289997887768154419998859991189898-6870--00068
Q 001553 207 KKCYAISWIDSSGGE----LPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPS--SIDLL 278 (1055)
Q Consensus 207 ~~~~~l~l~~~~~~~----l~~~~-~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~L 278 (1055)
.+++.+++....+.. +++.+ .+++|+.+.+..+... .++.. |..+++|++|++++|.+. .+|. .++.+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~---~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 125 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN---GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE---ECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC---CCCHH-HCCCCCCCEEECCCCCCCCCCCCHHHHHCC
T ss_conf 92789877899867755766965731680224678688867---87033-245788998989898578707896787278
Q ss_pred CCCCEEECCCCCCCC-C-CC-CCCCCCCCEEEEECCCCCCC-CHH---HCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
Q ss_conf 687599823889999-7-44-47888888998117989645-222---13999876884106888997483342799998
Q 001553 279 VNLQTLCLDYSTLGD-I-TI-IGKLKNLEILSLIESDIVEF-PEE---LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL 351 (1055)
Q Consensus 279 ~~Lr~L~L~~~~l~~-l-~~-i~~L~~L~~L~L~~~~l~~l-p~~---i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L 351 (1055)
.+|++|++++|.+.. + .. +.++.+|++|++++|.+... |.. +.++++|++|++++| .+....+ ++.+++|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L 202 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVD--VSRCVNL 202 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS-EEESCCB--CTTCTTC
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCC-CCCCCCC--CCCCCCC
T ss_conf 899989896882677479778563889998989798358858715566435898898989788-0346578--4547868
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-CCCC-CCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 89992157566522334776644446933389999997999022899999-8522-335665899997388889971013
Q 001553 352 EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL-PEGF-FVRELERFKILIGDRSFEPPVILS 429 (1055)
Q Consensus 352 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~l~~L~~l~i~~~~~~~~~~~~l~ 429 (1055)
++|++++|.+.. ..+ .++++++|+.|+++++..... +..+ .+.+|+.+.+......
T Consensus 203 ~~L~Ls~n~l~~-------------~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-------- 260 (768)
T 3rgz_A 203 EFLDVSSNNFST-------------GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV-------- 260 (768)
T ss_dssp CEEECCSSCCCS-------------CCC-BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE--------
T ss_pred CEEECCCCCCCC-------------CCC-CCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC--------
T ss_conf 989892882788-------------771-1126999998979488587816577744888898989888665--------
Q ss_pred CCCCCCCCCCHHHCCHHHHHEEEEECCCCCCHHHCCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCCCCEEEECCCCCCE
Q ss_conf 43212344410110000011013303653200100246561799650544692011002342355767589840589970
Q 001553 430 KDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLL 509 (1055)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~i~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~ 509 (1055)
..+ +...+++|+.|++.++.-.......+. ..+++|++|+++++....
T Consensus 261 ----------------------------~~~---~~~~l~~L~~L~L~~n~l~~~ip~~~~-~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 261 ----------------------------GPI---PPLPLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp ----------------------------ESC---CCCCCTTCCEEECCSSEEEESCCCCSC-TTCTTCSEEECCSSEEEE
T ss_pred ----------------------------CCC---CCCCCCCCCEEECCCCCCCCCCCHHHH-HHCCCCCEEECCCCCCCC
T ss_conf ----------------------------716---724368789897917855772588888-446868899896896778
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEECCCCCCCCCCCHHHHHCCC-CCCEEEECCCC
Q ss_conf 54138875577645544510223322533100245770000365546983698843345213331178-65288643444
Q 001553 510 FIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLP-SLQRIAVIKCN 588 (1055)
Q Consensus 510 ~i~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~-~L~~L~i~~c~ 588 (1055)
.+ ......+++|+.|.+.++.-...++.. ....+++|+.|.+.+|.-...+|. .+..++ +|+.|+++++.
T Consensus 309 ~~-----p~~~~~l~~L~~L~L~~n~l~~~ip~~--~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 309 AV-----PPFFGSCSLLESLALSSNNFSGELPMD--TLLKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp CC-----CGGGGGCTTCCEEECCSSEEEEECCHH--HHTTCTTCCEEECCSSEEEECCCT--THHHHTTTCSEEECCSSE
T ss_pred CC-----CHHHHCCCCCCEEECCCCCCCCCCCHH--HHHCCCCCCEEECCCCCCCCCCCH--HHHHHHCCCCEEECCCCC
T ss_conf 42-----367755877667789788525737978--872488887884847843762309--898632277199862787
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22676550688886446888743100132045642999765431238988999988767743467632112244333222
Q 001553 589 KMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSI 668 (1055)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 668 (1055)
-...++... ....+++|+.|.+.++.-...++ ..+..+++|+.|++++|.+...
T Consensus 380 l~~~~~~~~-------------~~~~~~~L~~L~L~~n~l~~~~p-------------~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 380 FSGPILPNL-------------CQNPKNTLQELYLQNNGFTGKIP-------------PTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCTTT-------------TCSTTCCCCEEECCSSEEEEECC-------------GGGGGCTTCCEEECCSSEEESC
T ss_pred CCCCCCHHH-------------HHCCCCCCCEEECCCCCCCCCCC-------------HHHHCCCCCCEEECCCCCCCCC
T ss_conf 478767666-------------53324776189897784654248-------------7775689879898958846685
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCEECCCCHHHHCCCCCEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36899755776658988067752060431022101445837890233343021324567899820135545211123785
Q 001553 669 WHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPE 748 (1055)
Q Consensus 669 ~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 748 (1055)
....+ ..+++|+.|.+.+|. +....+ ..+..+++|+.|++++|.-...++ .....+++|+.|++.++.-
T Consensus 434 ~p~~l-~~l~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 434 IPSSL-GSLSKLRDLKLWLNM-LEGEIP-QELMYVKTLETLILDFNDLTGEIP--------SGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp CCGGG-GGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCC
T ss_pred CCHHH-HCCCCCCEEECCCCC-CCCCCC-HHHCCCCCCEEEEECCCCCCCCCC--------HHHHCCCCCCEEECCCCCC
T ss_conf 46777-449988989897881-547189-788287773299901995137588--------7881699899897539951
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 23337987878899954899714887331246665334554322358998753202225775133102221010124789
Q 001553 749 LTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDF 828 (1055)
Q Consensus 749 l~~~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 828 (1055)
...++.... .+++|+.|++++|.-...+|.. -..+++|+.|++++|......|..+
T Consensus 503 ~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~----------------------l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 503 TGEIPKWIG--RLENLAILKLSNNSFSGNIPAE----------------------LGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGG--GCTTCCEEECCSSCCEEECCGG----------------------GGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CCCCCHHHH--CCCCCCEEECCCCCCCCCCCHH----------------------HCCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 896876885--6899998989789433748877----------------------7088989989898884688279578
Q ss_pred CCCCCC------CCCCEEEEECCCC-------------CCCCHHHHHHHCCCCEEEEECCCCEEE-ECCCCCCCCCCEEE
Q ss_conf 887657------8864799824899-------------865378998704886078601353146-03674011105697
Q 001553 829 PQDHLF------GSLKDLEVRDDDS-------------ASVPIGLLEKFHGLENLNLSFCSYKEL-FSNGGQVHLIKKLE 888 (1055)
Q Consensus 829 ~~~~~~------~~L~~L~i~~~~~-------------~~~~~~~l~~l~~L~~L~l~~c~l~~~-~~~~~~l~~L~~L~ 888 (1055)
...... ...+...+.+... .......+..++.++.+++..+.+... +...+.+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred HCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEE
T ss_conf 60421223201345421111344432222332221001355632320023211001133100462743340335665797
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCEE
Q ss_conf 35553553112477655753346537898705878623556011137345657889234363042223564001446101
Q 001553 889 LICLNDLEYLWIPNSKMGDSILQNLEILKVDSCQKLMNLVTPSGAKSLVRLESLTIYGCSAMTQVVISEGDAAAAKEEIV 968 (1055)
Q Consensus 889 l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 968 (1055)
++++.--..+ |. .+..+++|+.|+++++.--..+ |..+..+++|+.|+++++.--..++.....
T Consensus 639 Ls~N~l~g~i----p~-~l~~l~~L~~L~Ls~N~l~g~i--p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--------- 702 (768)
T 3rgz_A 639 MSYNMLSGYI----PK-EIGSMPYLFILNLGHNDISGSI--PDEVGDLRGLNILDLSSNKLDGRIPQAMSA--------- 702 (768)
T ss_dssp CCSSCCBSCC----CG-GGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCEECCCGGGGG---------
T ss_pred CCCCCCCCCC----CH-HHHCCCCCCEEECCCCCCCCCC--CHHHHCCCCCCEEECCCCCCCCCCCHHHHC---------
T ss_conf 8588015558----77-8841415787848688038878--967847778998989788023868867757---------
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 1442533224365533013888322499977799826898742376
Q 001553 969 FIKLKSLDLHHLDSLTSFSSGNYTFRFPSLEYLCVIGCPKMKIFTA 1014 (1055)
Q Consensus 969 l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~l~~lp~ 1014 (1055)
+++|+.|++++++--..+|.+.. +.++....+.|+|.+...|.
T Consensus 703 l~~L~~L~ls~N~l~g~iP~~~~---~~~~~~~~~~gN~~Lcg~~l 745 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPEMGQ---FETFPPAKFLNNPGLCGYPL 745 (768)
T ss_dssp CCCCSEEECCSSEEEEECCSSSS---GGGSCGGGGCSCTEEESTTS
T ss_pred CCCCCEEECCCCCCCCCCCCCHH---HCCCCHHHHCCCCHHCCCCC
T ss_conf 88789787968815560899601---02489777569832108877
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=320.63 Aligned_cols=175 Identities=21% Similarity=0.266 Sum_probs=128.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 8992158999889989999853999328999788776815441999885999118989868-700006868759982388
Q 001553 211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS 289 (1055)
Q Consensus 211 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~ 289 (1055)
.++.....+..+|.... +++++|++.++.+. .++...|.++++|++|+++++.+..+ |..|.++++|++|++++|
T Consensus 8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP-TNITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp EEECCSSCCSSCCSCSC-TTCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EEECCCCCCCCCCCCCC-CCCCEEECCCCCCC---CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 44877798052641248-88768889899778---759788717876758878899648569778740667688889998
Q ss_pred CCCCC--CCCCCCCCCCEEEEECCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99997--44478888889981179896452-2213999876884106888997483342799998899921575665223
Q 001553 290 TLGDI--TIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE 366 (1055)
Q Consensus 290 ~l~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 366 (1055)
.+..+ ..|+.+.+|++|++++|.+..+| ..++++++|++|++++| .+...++..++.+++|++|++++|.+..
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 159 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQA--- 159 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCC---
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC-CCCCCCCHHHCCCCCCCEEECCCCCCCC---
T ss_conf 567568545303888898989899668539667415678888989899-5246672111245567779745884365---
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCEEEEECCCCCCCCC
Q ss_conf 3477664444693338--999999799902289999985
Q 001553 367 DEGSSSKKSKASLDEL--MPLPRLTTLEIAVENDNALPE 403 (1055)
Q Consensus 367 ~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~ 403 (1055)
.....+ ..+++|+.|+++++....++.
T Consensus 160 ----------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 160 ----------LKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp ----------BCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ----------CCHHHHHCCCCCCCCEEECCCCCCCCCCH
T ss_conf ----------29788624466632179888982565581
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=309.62 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=68.9
Q ss_pred CCCCEEEEEECCCCCCCCCC-C-CCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCC
Q ss_conf 48700899215899988998-9-99985399932899978877681544199988599911898986870-000686875
Q 001553 206 LKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQ 282 (1055)
Q Consensus 206 ~~~~~~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr 282 (1055)
+.+++++.+.++.+..++.. + .+++|++|++.++... .++...|.++++|++|++++|.+..+|. .|..+.+|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC---CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 888768889899778759788717876758878899648---56977874066768888999856756854530388889
Q ss_pred EEECCCCCCCCC--CCCCCCCCCCEEEEECCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCHHHHC--CCCCCCEEECC
Q ss_conf 998238899997--4447888888998117989645-222139998768841068889974833427--99998899921
Q 001553 283 TLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIA--SFTRLEELYMS 357 (1055)
Q Consensus 283 ~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~--~L~~L~~L~l~ 357 (1055)
+|++++|.+..+ ..|+++.+|++|++++|.+... |..++++++|++|++++| .+..+++..++ .+++|++|+++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCC-CCCCCCHHHHHCCCCCCCCEEECC
T ss_conf 8989899668539667415678888989899524667211124556777974588-436529788624466632179888
Q ss_pred CCCCC
Q ss_conf 57566
Q 001553 358 NCFVE 362 (1055)
Q Consensus 358 ~~~~~ 362 (1055)
+|.+.
T Consensus 180 ~n~l~ 184 (680)
T 1ziw_A 180 SNQIK 184 (680)
T ss_dssp TCCCC
T ss_pred CCCCC
T ss_conf 98256
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=301.24 Aligned_cols=146 Identities=17% Similarity=0.284 Sum_probs=91.8
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 8992158999889989999853999328999788776815441999885999118989868-700006868759982388
Q 001553 211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS 289 (1055)
Q Consensus 211 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~ 289 (1055)
.+...+..+..+|..+. +++++|++.++... .++...|.++++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK---ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSSCCTTSC-TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEECCCCCCCCCCCCCC-CCCCEEECCCCCCC---EECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCC
T ss_conf 05746888451898888-87678878889757---737545557766748868877366439777306010688678798
Q ss_pred CCCCC--CCCCCCCCCCEEEEECCCCCCCC-HHHCCCCCCCEEECCCCCCCCC--CCHHHHCCCCCCCEEECCCCCCC
Q ss_conf 99997--44478888889981179896452-2213999876884106888997--48334279999889992157566
Q 001553 290 TLGDI--TIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVE 362 (1055)
Q Consensus 290 ~l~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~ 362 (1055)
.+..+ ..|+++.+|++|++++|.+..+| ..++++++|++|++++| .+.. +|.. ++++++|++|++++|.+.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEECHHH-HHHCCCCCEEECCCCCCE
T ss_conf 563048522078653788870377555445113489887798968788-5232530686-732677778876688531
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=295.75 Aligned_cols=171 Identities=22% Similarity=0.213 Sum_probs=98.2
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 8992158999889989999853999328999788776815441999885999118989868-700006868759982388
Q 001553 211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS 289 (1055)
Q Consensus 211 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~ 289 (1055)
.+...+..+..+|..+ .+.++.|++.+|.+. .++...|.++++|++|++++|.+..+ |..|..+.+|++|++++|
T Consensus 16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL-PNSTECLEFSFNVLP---TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCSSCCTTS-CTTCCEEECTTCCCS---EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCCCCCCCCC-CCCCCEEECCCCCCC---CCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCC
T ss_conf 3777779806286778-986758981587347---179667256766528978898355248511368433676448898
Q ss_pred CCCCC--CCCCCCCCCCEEEEECCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99997--4447888888998117989645-22213999876884106888997483342799998899921575665223
Q 001553 290 TLGDI--TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE 366 (1055)
Q Consensus 290 ~l~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 366 (1055)
.+..+ ..|+.+.+|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 167 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHY--- 167 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCE---
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCC---
T ss_conf 565458655234421537652126766578101223782238988798-3411476545687656877765684455---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--EEEEECCCCC
Q ss_conf 34776644446933389999997--9990228999
Q 001553 367 DEGSSSKKSKASLDELMPLPRLT--TLEIAVENDN 399 (1055)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~ 399 (1055)
..+..++.+++|+ .|++.++...
T Consensus 168 ----------~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 168 ----------LSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp ----------ECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ----------CCHHHHHHHCCCCEEEEECCCCCCC
T ss_conf ----------4965633221564038966798147
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=294.98 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=72.4
Q ss_pred EEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCEEEEE
Q ss_conf 999328999788776815441999885999118989868-70000686875998238899997--444788888899811
Q 001553 233 LLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLI 309 (1055)
Q Consensus 233 ~L~l~~~~~~~~~~i~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 309 (1055)
+++..+.... .+|..+ ...+++|+++++.++.+ |..|..+++|++|++++|.+..+ ..|+++.+|++|+++
T Consensus 16 ~~~c~~~~l~---~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 16 TYNCENLGLN---EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp EEECTTSCCS---SCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred EEECCCCCCC---CCCCCC---CCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECC
T ss_conf 3777779806---286778---9867589815873471796672567665289788983552485113684336764488
Q ss_pred CCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7989645-222139998768841068889974833427999988999215756652233477664444693338999999
Q 001553 310 ESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRL 388 (1055)
Q Consensus 310 ~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (1055)
+|.+..+ |..++.+++|++|++++| .+..+++..++.+++|++|++++|.+.. .....+..+++|
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~~~~l~~L 155 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISS-------------IKLPKGFPTEKL 155 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCC-------------CCCCTTCCCTTC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCCCHHCCCCCCCEEECCCCCCCC-------------CCCCCCCCCCCC
T ss_conf 98565458655234421537652126-7665781012237822389887983411-------------476545687656
Q ss_pred CEEEEECCCCCCC
Q ss_conf 7999022899999
Q 001553 389 TTLEIAVENDNAL 401 (1055)
Q Consensus 389 ~~L~l~~~~~~~~ 401 (1055)
+.|+++++....+
T Consensus 156 ~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 156 KVLDFQNNAIHYL 168 (606)
T ss_dssp CEEECCSSCCCEE
T ss_pred CEEECCCCCCCCC
T ss_conf 8777656844554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=287.09 Aligned_cols=154 Identities=23% Similarity=0.215 Sum_probs=75.5
Q ss_pred CCCCCEEEEEECCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCC
Q ss_conf 1487008992158999889989--999853999328999788776815441999885999118989868-7000068687
Q 001553 205 ALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNL 281 (1055)
Q Consensus 205 ~~~~~~~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L 281 (1055)
.+.+++.+.+.++.+..++... ++++|++|++.+|.+. .+++..|.++++|++|++++|.+..+ |..|+.+.+|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC---CCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCC
T ss_conf 8887678878889757737545557766748868877366---4397773060106886787985630485220786537
Q ss_pred CEEECCCCCCCCC--CCCCCCCCCCEEEEECCCCC--CCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCC----E
Q ss_conf 5998238899997--44478888889981179896--45222139998768841068889974833427999988----9
Q 001553 282 QTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLE----E 353 (1055)
Q Consensus 282 r~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~----~ 353 (1055)
++|++++|.+..+ ..++++.+|++|++++|.+. .+|..++++++|++|++++| .+..+++..++.+++|+ .
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCE
T ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCC-CCEECCHHHHHHHHCCCCCCCE
T ss_conf 888703775554451134898877989687885232530686732677778876688-5310573341212034200243
Q ss_pred EECCCCCCC
Q ss_conf 992157566
Q 001553 354 LYMSNCFVE 362 (1055)
Q Consensus 354 L~l~~~~~~ 362 (1055)
|++++|.+.
T Consensus 186 L~l~~n~l~ 194 (606)
T 3vq2_A 186 LDMSLNPID 194 (606)
T ss_dssp EECTTCCCC
T ss_pred EECCCCCCC
T ss_conf 004689753
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=271.90 Aligned_cols=193 Identities=19% Similarity=0.236 Sum_probs=141.3
Q ss_pred EEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC-C-CCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCC
Q ss_conf 8998369878999800148700899215899988998-9-9998539993289997887768154419998859991189
Q 001553 189 EFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNM 266 (1055)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~Lr~L~L~~~ 266 (1055)
+....+.+....|. .+.+++++.+.++.+..+.+. + .+++|++|++.+|.... .++...|.++++|++|++++|
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTC
T ss_pred EEECCCCCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCC--CCCHHHHCCCCCCCEEECCCC
T ss_conf 89823799777898--99986888887786783296677662137088678997744--419778537877888879899
Q ss_pred CCCCC-CCCCCCCCCCCEEECCCCCCCC--CCC--CCCCCCCCEEEEECCCCCCC--CHHHCCCCCCCEEECCCCCCCCC
Q ss_conf 89868-7000068687599823889999--744--47888888998117989645--22213999876884106888997
Q 001553 267 QLFSL-PSSIDLLVNLQTLCLDYSTLGD--ITI--IGKLKNLEILSLIESDIVEF--PEELGKLTKLRLLDLTNCFHLKV 339 (1055)
Q Consensus 267 ~i~~l-p~~i~~L~~Lr~L~L~~~~l~~--l~~--i~~L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~ 339 (1055)
.+..+ |..|..+.+|++|++++|.+.. +.. ++.+.+|++|++++|.+..+ +..++++++|++|++++| .+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCC
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCC-CCCE
T ss_conf 585319767157866587017678897340467645566799988898786423256655763889898989898-4776
Q ss_pred CCHHHHCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCEEEEECCCCC
Q ss_conf 483342799--99889992157566522334776644446933389999------9979990228999
Q 001553 340 IAPNVIASF--TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP------RLTTLEIAVENDN 399 (1055)
Q Consensus 340 ~~~~~l~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~ 399 (1055)
+.+..++.+ ++|+.|++++|.+.. ..+..++.+. .|+.|+++++...
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~-------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYS-------------RVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCC-------------CCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred ECHHHCCCCCCCCCCEEECCCCCCCC-------------CCCCCHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf 67887535567750357897886665-------------54553322377223574007965788686
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=267.59 Aligned_cols=152 Identities=23% Similarity=0.234 Sum_probs=68.0
Q ss_pred CCCCEEEEEECCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCC
Q ss_conf 48700899215899988998--99998539993289997887768154419998859991189898687-0000686875
Q 001553 206 LKKCYAISWIDSSGGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQ 282 (1055)
Q Consensus 206 ~~~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr 282 (1055)
+..++++++.++.+..++.. ..+++|++|++.+|.+. .++...|.++++|++|++++|.+..+| ..|..+.+|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCEEEECCCCCCC---CCCCCCCCCCHHCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 655648976588547328657427888629989899577---14821014802188876769957744975615750133
Q ss_pred EEECCCCCCCCC--CCCCCCCCCCEEEEECCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC----CEE
Q ss_conf 998238899997--444788888899811798964--522213999876884106888997483342799998----899
Q 001553 283 TLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL----EEL 354 (1055)
Q Consensus 283 ~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L----~~L 354 (1055)
+|+++++.+..+ ..++.+.+|++|++++|.+.. +|..++++++|++|++++| .+..+++..++.+++| +.+
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCHHHHCCCCCCCEEECCCC-CCCEECHHHCCCHHCCCHHHHHC
T ss_conf 23165466234787665445555577567874220037044424688787867687-01324678805631044143312
Q ss_pred ECCCCCC
Q ss_conf 9215756
Q 001553 355 YMSNCFV 361 (1055)
Q Consensus 355 ~l~~~~~ 361 (1055)
++++|.+
T Consensus 183 ~l~~n~l 189 (570)
T 2z63_A 183 DLSLNPM 189 (570)
T ss_dssp ECTTCCC
T ss_pred CCCCCCC
T ss_conf 3578975
Done!