BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001554
(1055 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 214/705 (30%), Positives = 319/705 (45%), Gaps = 102/705 (14%)
Query: 339 LSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNS-----FTG 393
LS+ + GS+ S F L ++D SRN+ SG + + S LKF + S F G
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 394 TIPLSYGDQLISLQVLDLRNNSLQG--IIPKSLYTK-QSIESLLLGQNKFHGQLE----- 445
+ S G +L SL+VLDL NS+ G ++ L ++ L + NK G ++
Sbjct: 140 KV--SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 446 --KFQNASS-------------LSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS 490
+F + SS +L+ +D S NKL G +I L +L +SSN+F
Sbjct: 198 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 491 GFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKIT-EFPNFLRNQ 549
G I K L+ L L+ K T E P+FL
Sbjct: 258 GPIPPLPLKSLQYL----------------------------SLAENKFTGEIPDFLSGA 289
Query: 550 TN-LFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPN---LTSTVLAV 605
+ L LDLS N G +P + G L F P L L V
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFF-----GSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 606 LDLHSNMLQGSFPIP----PASIIFLDYSENKFTTXXXXXXXXXXXXAV-FFSLASNNLS 660
LDL N G P AS++ LD S N F+ + L +N +
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 661 GGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECS 720
G IP +L N +L L LS N+L+G+IPS L S + L+ LKL N G +PQ + +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 721 LRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
L TL L N L G +P LS CT+L + + N+L G P W+ L L +L L +N++
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 781 GSIKDTQTANAFALLQIIDISSNNFSGNLPARWF-QSWR-----------------GMKK 822
G+I + + +L+ +D+++N F+G +PA F QS + GMKK
Sbjct: 525 GNIP-AELGDCRSLIW-LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 823 RTKESQESQILKFVYL---ELSNLYYQDSVTLMNKGLSMELAKILTIFTS---IDVSNNQ 876
+ +L+F + +L+ L ++ + ++ + S +D+S N
Sbjct: 583 ECHGA--GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 877 FEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATL 936
G IP+ +G L +LN+ +N+ G IP +G+L+ L LDLS N+L G+IP+ ++ L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 937 NFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKA 981
L+ + LS N L G IP QF TF A F N GLCG+PLP+
Sbjct: 701 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 172 bits (436), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 225/772 (29%), Positives = 341/772 (44%), Gaps = 84/772 (10%)
Query: 39 LLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGIN 98
L E + +SF N L WSS + C++DGVTC R V +D+SS + G +
Sbjct: 7 LYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFS 64
Query: 99 GSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIP--LEISSLK 156
SS NS + SGF SLT L+LS + SG + + S
Sbjct: 65 AVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 123
Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGAD---WGPXXXXXXX 213
L L++S++ L P ++ L +LE L L ISGA+ W
Sbjct: 124 GLKFLNVSSNTLDFPGKVSGG------LKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 177
Query: 214 XXXXXXPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLY 273
+ ++G + +S+ L L++ N+ S+ +P FL + S+LQ+L +S L
Sbjct: 178 KHLAISGN-KISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 274 GRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLA- 332
G I L L++SSN G +P P S L+ + L+E +F+G++PD ++
Sbjct: 234 GDFSRAISTCTELKLLNISSNQ-FVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACD 291
Query: 333 LLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP--SFASSNKVISLKFAHNS 390
L L+LS +F+G++P FG+ + L ++ S NNFSG LP + + L + N
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 391 FTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYT--KQSIESLLLGQNKFHGQL-EKF 447
F+G +P S + SL LDL +N+ G I +L K +++ L L N F G++
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 448 QNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTL 507
N S L + F N L G +P S+ + L L+L N G E+ ++L + TL
Sbjct: 412 SNCSELVSLHLSF--NYLSGTIPSSLGSLSKLRDLKLWLNMLEG----EIPQELMYVKTL 465
Query: 508 ELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKIT-EFPNFLRNQTNLFHLDLSNNRIKGEI 566
E TL L +T E P+ L N TNL + LSNNR+ GEI
Sbjct: 466 E----------------------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 567 PNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP------ 620
P W + + L L LS+N P L LDL++N+ G+ P
Sbjct: 504 PKWIGRLEN--LAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 621 --PASIIF---LDYSENKFTTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSLCN------ 669
A+ I Y +N S N LS P ++ +
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 670 ---AFD----LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLR 722
FD + LD+S N L+G IP + S L +L L +N+ G++P +G+ L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 723 TLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFW--LETLPQLRVL 772
LDLS N L G +P+++S T L +D+ N L+G P ET P + L
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 118/311 (37%), Gaps = 55/311 (17%)
Query: 101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVS 160
S L + L ++L++N L + P RL +L L LS + FSG+IP E+ + L+
Sbjct: 481 SGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 161 LDLSAS---GLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPXXXXXXXXXXX 217
LDL+ + G + +++ K+ N I+G +
Sbjct: 540 LDLNTNLFNGTIPAAMFKQSG--KIAANF------------IAGKRY------VYIKNDG 579
Query: 218 XXPDCHVAGPI-------HSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLC 270
+CH AG + L++L N+ N S+ +L +S
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 271 GLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINN 330
L G +P++I MP L L++ N SG +PD + +
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHND------------------------ISGSIPDEVGD 675
Query: 331 LALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNS 390
L L L+LS G IP + LT L ID S NN SG +P KF +N
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 735
Query: 391 FTGTIPLSYGD 401
PL D
Sbjct: 736 GLCGYPLPRCD 746
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 213/705 (30%), Positives = 316/705 (44%), Gaps = 102/705 (14%)
Query: 339 LSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNS-----FTG 393
LS+ + GS+ S F L ++D SRN+ SG + + S LKF + S F G
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 394 TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQ---SIESLLLGQNKFHGQLE----- 445
+ S G +L SL+VLDL NS+ G ++ L + NK G ++
Sbjct: 143 KV--SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 446 --KFQNASS-------------LSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS 490
+F + SS +L+ +D S NKL G +I L +L +SSN+F
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 491 GFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKIT-EFPNFLRNQ 549
G I K L+ L L+ K T E P+FL
Sbjct: 261 GPIPPLPLKSLQYL----------------------------SLAENKFTGEIPDFLSGA 292
Query: 550 TN-LFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPN---LTSTVLAV 605
+ L LDLS N G +P + G L F P L L V
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFF-----GSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 606 LDLHSNMLQGSFPIP----PASIIFLDYSENKFTTXXXXXXXXXXXXAV-FFSLASNNLS 660
LDL N G P AS++ LD S N F+ + L +N +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 661 GGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECS 720
G IP +L N +L L LS N+L+G+IPS L S + L+ LKL N G +PQ + +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 721 LRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
L TL L N L G +P LS CT+L + + N+L G P W+ L L +L L +N++
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 781 GSIKDTQTANAFALLQIIDISSNNFSGNLPARWF-QSWR-----------------GMKK 822
G+I + + +L+ +D+++N F+G +PA F QS + GMKK
Sbjct: 528 GNIP-AELGDCRSLIW-LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 823 RTKESQESQILKFVYL---ELSNLYYQDSVTLMNKGLSMELAKILTIFTS---IDVSNNQ 876
+ +L+F + +L+ L ++ + ++ + S +D+S N
Sbjct: 586 ECHGA--GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 877 FEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATL 936
G IP+ +G L +LN+ +N+ G IP +G+L+ L LDLS N+L G+IP+ ++ L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 937 NFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKA 981
L+ + LS N L G IP QF TF A F N GLCG+PLP+
Sbjct: 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 172 bits (436), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 225/772 (29%), Positives = 341/772 (44%), Gaps = 84/772 (10%)
Query: 39 LLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGIN 98
L E + +SF N L WSS + C++DGVTC R V +D+SS + G +
Sbjct: 10 LYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFS 67
Query: 99 GSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIP--LEISSLK 156
SS NS + SGF SLT L+LS + SG + + S
Sbjct: 68 AVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126
Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGAD---WGPXXXXXXX 213
L L++S++ L P ++ L +LE L L ISGA+ W
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGG------LKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 214 XXXXXXPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLY 273
+ ++G + +S+ L L++ N+ S+ +P FL + S+LQ+L +S L
Sbjct: 181 KHLAISGN-KISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 274 GRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLA- 332
G I L L++SSN G +P P S L+ + L+E +F+G++PD ++
Sbjct: 237 GDFSRAISTCTELKLLNISSNQ-FVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACD 294
Query: 333 LLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP--SFASSNKVISLKFAHNS 390
L L+LS +F+G++P FG+ + L ++ S NNFSG LP + + L + N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 391 FTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYT--KQSIESLLLGQNKFHGQL-EKF 447
F+G +P S + SL LDL +N+ G I +L K +++ L L N F G++
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 448 QNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTL 507
N S L + F N L G +P S+ + L L+L N G E+ ++L + TL
Sbjct: 415 SNCSELVSLHLSF--NYLSGTIPSSLGSLSKLRDLKLWLNMLEG----EIPQELMYVKTL 468
Query: 508 ELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKIT-EFPNFLRNQTNLFHLDLSNNRIKGEI 566
E TL L +T E P+ L N TNL + LSNNR+ GEI
Sbjct: 469 E----------------------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 567 PNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP------ 620
P W + + L L LS+N P L LDL++N+ G+ P
Sbjct: 507 PKWIGRLEN--LAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 621 --PASIIF---LDYSENKFTTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSLCN------ 669
A+ I Y +N S N LS P ++ +
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 670 ---AFD----LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLR 722
FD + LD+S N L+G IP + S L +L L +N+ G++P +G+ L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 723 TLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFW--LETLPQLRVL 772
LDLS N L G +P+++S T L +D+ N L+G P ET P + L
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 118/311 (37%), Gaps = 55/311 (17%)
Query: 101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVS 160
S L + L ++L++N L + P RL +L L LS + FSG+IP E+ + L+
Sbjct: 484 SGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 161 LDLSAS---GLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPXXXXXXXXXXX 217
LDL+ + G + +++ K+ N I+G +
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSG--KIAANF------------IAGKRY------VYIKNDG 582
Query: 218 XXPDCHVAGPI-------HSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLC 270
+CH AG + L++L N+ N S+ +L +S
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 271 GLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINN 330
L G +P++I MP L L++ N SG +PD + +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHND------------------------ISGSIPDEVGD 678
Query: 331 LALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNS 390
L L L+LS G IP + LT L ID S NN SG +P KF +N
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738
Query: 391 FTGTIPLSYGD 401
PL D
Sbjct: 739 GLCGYPLPRCD 749
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 132/315 (41%), Gaps = 56/315 (17%)
Query: 669 NAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRN-NEFLGTVPQVIGNECSLRTLDLS 727
N DL L+L + IPS L + L L + N +G +P I L L ++
Sbjct: 53 NNLDLSGLNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 728 QNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQ 787
+++G++P LS+ +L LD N L+G+ P + +LP L + N G+I D+
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 788 TANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQD 847
+ + L + IS N +G +P
Sbjct: 170 GSFS-KLFTSMTISRNRLTGKIPP------------------------------------ 192
Query: 848 SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA 907
T N L+ +D+S N EG+ + G ++++ N+ +
Sbjct: 193 --TFANLNLAF-----------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238
Query: 908 TLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASF 967
+G K L LDL +N++ G +P+ L L FL L +S N L GEIP+G F +++
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
Query: 968 EGNAGLCGFPLPKAC 982
N LCG PLP AC
Sbjct: 299 ANNKCLCGSPLP-AC 312
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 227 PIHSSLSKLQLLTHLNLDG-NDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPS 285
PI SSL+ L L L + G N+L +P + + L YL+++ + G +P+ + + +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 286 LCFLDVSSNSNLTGSLPEFPPS-SQLKVIELSETRFSGKLPDSINNLA-LLEDLELSDCN 343
L LD S N+ L+G+LP S L I R SG +PDS + + L + +S
Sbjct: 127 LVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 344 FFGSIPSSFGNLTELINIDFSRNNFSGSLPS-FASSNKVISLKFAHNSFT---GTIPLSY 399
G IP +F NL L +D SRN G F S + A NS G + LS
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 400 GDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQN 449
+L LDLRNN + G +P+ L + + SL + N G++ + N
Sbjct: 245 -----NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 137/328 (41%), Gaps = 44/328 (13%)
Query: 32 CLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCC--SWDGVTCDP--RTGHVIGLD 87
C K LL+ K+ L +P T L SW TTDCC +W GV CD +T V LD
Sbjct: 3 CNPQDKQALLQIKKDLG-NPTT-----LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLD 56
Query: 88 ISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGH 147
+S + SSL +L L L + + P P +L L +L ++++ SG
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 148 IPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPX 207
IP +S +K LV+LD S + L L + +L NL + G ISGA
Sbjct: 117 IPDFLSQIKTLVTLDFSYNAL-------SGTLPPSISSLPNLVGITFDGNRISGA----- 164
Query: 208 XXXXXXXXXXXXPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHL 267
PD + S SK L T + + N L+ ++P N +L ++ L
Sbjct: 165 -----------IPDS------YGSFSK--LFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 268 SLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDS 327
S L G + + ++ NS L L + S L ++L R G LP
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 328 INNLALLEDLELSDCNFFGSIPSSFGNL 355
+ L L L +S N G IP GNL
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNL 290
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 651 FFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGT 710
+ + N+SG IP L L LD S N L+G++P + S L + N G
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 711 VPQVIGNECSLRT-LDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNG 757
+P G+ L T + +S+N L G +P + + +L +D+ +N L G
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEG 211
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 99/283 (34%), Gaps = 99/283 (34%)
Query: 455 LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXX 514
L + + + G +P+ + QIK L L S N SG +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-------------------- 142
Query: 515 XXXXXXXXXXXXPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVG 574
P I +L NL + NRI G IP+ ++
Sbjct: 143 ------------PSISSLP-----------------NLVGITFDGNRISGAIPD-SYGSF 172
Query: 575 DGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKF 634
+ +S N L K P + LA +DL NML+G AS++F +K
Sbjct: 173 SKLFTSMTISRNRLTG--KIPPTFANLNLAFVDLSRNMLEGD-----ASVLF---GSDKN 222
Query: 635 TTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSS 694
T LA N+L AFDL + LS N
Sbjct: 223 TQK--------------IHLAKNSL----------AFDLGKVGLSKN------------- 245
Query: 695 NILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPK 737
L L LRNN GT+PQ + L +L++S N+L G +P+
Sbjct: 246 --LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 89/232 (38%), Gaps = 39/232 (16%)
Query: 463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXXXXXXXXXX 522
N L G +P +I ++ L+ L ++ SG I + ++ L TL+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALS------- 138
Query: 523 XXXXPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLN 582
GTL S I+ PN L + NRI G IP+ ++ +
Sbjct: 139 -------GTLPPS---ISSLPN-------LVGITFDGNRISGAIPD-SYGSFSKLFTSMT 180
Query: 583 LSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIF-LDYSENKFTTXXXXX 641
+S N L K P + LA +DL NML+G AS++F D + K
Sbjct: 181 ISRNRLTG--KIPPTFANLNLAFVDLSRNMLEGD-----ASVLFGSDKNTQKIHLAKNSL 233
Query: 642 XXXXXXXAVF-----FSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIP 688
+ L +N + G +P L L L++S N+L G IP
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNI--LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN 729
+LQ LDLS N + S L N+ L+ L L +NE LG Q L LDL+
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 730 HLAGSLPKS-LSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNY-DGSIKDTQ 787
L + P+S L+VL++ L+ S L LP LR L L+ N++ DG+I T
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTN 467
Query: 788 TANAFALLQIIDISS 802
L+++ +SS
Sbjct: 468 LLQTVGSLEVLILSS 482
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 147/330 (44%), Gaps = 25/330 (7%)
Query: 172 IQLRRANLEKL-VKNLTNLEELYLGGIDISGADWGPXXXXXXXXXXXXXPDC--HVAGPI 228
IQ +NLE + V NL NLE LYLG IS + + +++
Sbjct: 110 IQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISRED 169
Query: 229 HSSLSKLQLLTHLNLDGNDLSS-EVPDF-LTNFSSLQY-----LHLSLCGLYGRVPEKIF 281
SL + L+ LN +GN++ E+ F T F SL + L + GL + ++
Sbjct: 170 MRSLEQAINLS-LNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLW 228
Query: 282 LMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSD 341
L F D+ + +++ ++ + ++ + L E RFS + L++L+L+
Sbjct: 229 LGT---FEDI-DDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTA 284
Query: 342 CNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSN--KVISLKFAHNSFTGTIPLSY 399
+ G +PS L L + S N+F L +++N + L N + +
Sbjct: 285 THLKG-LPSGMKGLNLLKKLVLSVNHFD-QLCQISAANFPSLTHLYIRGNVKKLHLGVGC 342
Query: 400 GDQLISLQVLDLRNNSLQGIIPKSLYTKQ--SIESLLLGQNKFHG-QLEKFQNASSLSLR 456
++L +LQ LDL +N ++ SL K +++L L N+ G Q + F+ L L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 457 EMDFSQNKLQGLVPESIFQ-IKGLNVLRLS 485
++ F+ +L P+S FQ + L VL L+
Sbjct: 403 DLAFT--RLHINAPQSPFQNLHFLQVLNLT 430
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 73 GVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNS---LYSSPFPSG-- 127
GV C + G++ LD+S + I S L +L LQ LNL+ N L S F
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQ 398
Query: 128 ---FDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVA--PIQLRRANLE 180
D F+ H+N S F L++ +L LD S L+A P+ LR NL+
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCF-LDTSNQHLLAGLPV-LRHLNLK 454
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNI--LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN 729
+LQ LDLS + + S L N+ L+ L L NE LG Q L LD++
Sbjct: 350 NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFT 409
Query: 730 HLAGSLPKS-LSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNY-DGSIKDTQ 787
HL P S L VL++ L+ S L L LR L LQ N++ DGSI T
Sbjct: 410 HLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTN 469
Query: 788 TANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQD 847
L+I+ +SS NL + Q++ G++
Sbjct: 470 LLQMVGSLEILILSS----CNLLSIDQQAFHGLRN------------------------- 500
Query: 848 SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA 907
+D+S+N G+ + L L LNM++NN + P
Sbjct: 501 -------------------VNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPH 540
Query: 908 TLGNLKELGSLDLSHNQL 925
L L + ++LSHN L
Sbjct: 541 LLPALSQQSIINLSHNPL 558
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 117/313 (37%), Gaps = 65/313 (20%)
Query: 728 QNHLAGSLPKSLSKC-TSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDT 786
Q H L S +C T ++ LD+ LNG P +E + L+ LVL +N++D +
Sbjct: 261 QKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQ-- 317
Query: 787 QTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKK--------RTKESQESQILKFVYL 838
A +F L+ + I N +L R + ++K + Q+ +L
Sbjct: 318 INAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHL 377
Query: 839 ELSNLYYQDSVTLMNKGL----SMELAKI----------------LTIFTSIDVSNNQFE 878
+ NL Y + + L ++ +EL + L + +++S+ +
Sbjct: 378 QYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLD 437
Query: 879 GEIPEMLGDFDALLVLNMSNNNFK-GQIPAT--------------------------LGN 911
+L L LN+ N+F+ G I T
Sbjct: 438 TSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG 497
Query: 912 LKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNA 971
L+ + LDLSHN L+G + L+ L L + S N+ + IP P A S +
Sbjct: 498 LRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRI--IP--PHL--LPALSQQSII 551
Query: 972 GLCGFPLPKACQN 984
L PL C N
Sbjct: 552 NLSHNPLDCTCSN 564
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 73 GVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLA--------DNSLYSSPF 124
G C + ++ LD+S S I + L +L+ LQ+LNL+ D + P
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ 400
Query: 125 PSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQ-LRRANLE 180
D F+ H+ +S F L + +L + LD S L+A +Q LR NL+
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCL-LDTSNQHLLAGLQDLRHLNLQ 456
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 618 PIPPASIIFLDYSENKFTTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSLC--NAFDLQV 675
P P+S FL++++N FT L N L ++L N L+
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI-LQRNGLKNFFKVALMTKNMSSLET 407
Query: 676 LDLSDNHLTGSI--PSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAG 733
LD+S N L +C + +IL VL L +N G+V + + + ++ LDL N +
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESIL-VLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM- 463
Query: 734 SLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGS 782
S+PK ++ +L+ L+V NQL + L L+ + L N +D +
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 4/163 (2%)
Query: 327 SINNLALLEDLELSDCNFFGSI-PSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLK 385
+ LALLE L+LSD S+ P++F L L + R P +
Sbjct: 74 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 386 FAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF-HGQL 444
+ ++ +P L +L L L N + + ++ S++ LLL QN+ H
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Query: 445 EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSN 487
F++ L + N L L E++ ++ L LRL+ N
Sbjct: 194 HAFRDLG--RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 6/150 (4%)
Query: 230 SSLSKLQLLTHLNLDGN-DLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCF 288
++ + L LL L+L N L S P L LHL CGL P + +L +
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 289 LDVSSNSNLTGSLPE--FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFG 346
L + N+ +LP+ F L + L R S + L L+ L L
Sbjct: 133 LYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 190
Query: 347 SIPSSFGNLTELINIDFSRNNFSGSLPSFA 376
P +F +L L+ + NN S +LP+ A
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLS-ALPTEA 219
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 4/163 (2%)
Query: 327 SINNLALLEDLELSDCNFFGSI-PSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLK 385
+ LALLE L+LSD S+ P++F L L + R P +
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 386 FAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF-HGQL 444
+ ++ +P L +L L L N + + ++ S++ LLL QN+ H
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 445 EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSN 487
F++ L + N L L E++ ++ L LRL+ N
Sbjct: 195 HAFRDLG--RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 6/150 (4%)
Query: 230 SSLSKLQLLTHLNLDGN-DLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCF 288
++ + L LL L+L N L S P L LHL CGL P + +L +
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 289 LDVSSNSNLTGSLPE--FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFG 346
L + N+ +LP+ F L + L R S + L L+ L L
Sbjct: 134 LYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 347 SIPSSFGNLTELINIDFSRNNFSGSLPSFA 376
P +F +L L+ + NN S +LP+ A
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEA 220
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 107/237 (45%), Gaps = 23/237 (9%)
Query: 283 MPSLCFLDVSSNS-NLTG--SLPEFPPSSQLKVIELSETRFSGKLPDSINNLAL--LEDL 337
+PSL FLD+S N + G S +F +S LK ++LS F+G + S N L L LE L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLS---FNGVITMSSNFLGLEQLEHL 401
Query: 338 ELSDCNFFG-SIPSSFGNLTELINIDFS----RNNFSGSLPSFASSNKVISLKFAHNSFT 392
+ N S S F +L LI +D S R F+G +S + LK A NSF
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS---LEVLKMAGNSFQ 458
Query: 393 GTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASS 452
+L +L LDL L+ + P + + S++ L + N F L+ F
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL 517
Query: 453 LSLREMDFSQNKLQGLVPESIFQI-KGLNVLRLSSNKFSGFIT----LEMFKDLRQL 504
SL+ +D+S N + + + L L L+ N F+ L+ KD RQL
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 574
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
L +L+L N + + +FL L++L L +FL + +L +LD+S
Sbjct: 375 LKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 297 LTGSLPEFPPSSQLKVIELSETRFSGK-LPDSINNLALLEDLELSDCNFFGSIPSSFGNL 355
F S L+V++++ F LPD L L L+LS C P++F +L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 356 TELINIDFSRNNF 368
+ L ++ S NNF
Sbjct: 494 SSLQVLNMSHNNF 506
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 868 TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG 927
T +D+S Q E P +L VLNMS+NNF L L LD S N +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Query: 928 KIPEKLATL-NFLSVLKLSQN 947
++L + L+ L L+QN
Sbjct: 533 SKKQELQHFPSSLAFLNLTQN 553
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 10/167 (5%)
Query: 235 LQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP-EKIFL-MPSLCFLDVS 292
L+ L HL+ ++L ++ +F S ++L + + RV IF + SL L ++
Sbjct: 395 LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 293 SNSNLTGSLPE-FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSS 351
NS LP+ F L ++LS+ + P + N+L+ L+ L +S NFF
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 352 FGNLTELINIDFSRNNFSGS----LPSFASSNKVISLKFAHNSFTGT 394
+ L L +D+S N+ S L F SS ++L N F T
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL--TQNDFACT 558
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 106/237 (44%), Gaps = 23/237 (9%)
Query: 283 MPSLCFLDVSSNS-NLTG--SLPEFPPSSQLKVIELSETRFSGKLPDSINNLAL--LEDL 337
+PSL FLD+S N + G S +F S LK ++LS F+G + S N L L LE L
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLS---FNGVITMSSNFLGLEQLEHL 425
Query: 338 ELSDCNFFG-SIPSSFGNLTELINIDFS----RNNFSGSLPSFASSNKVISLKFAHNSFT 392
+ N S S F +L LI +D S R F+G +S + LK A NSF
Sbjct: 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS---LEVLKMAGNSFQ 482
Query: 393 GTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASS 452
+L +L LDL L+ + P + + S++ L + N F L+ F
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL 541
Query: 453 LSLREMDFSQNKLQGLVPESIFQI-KGLNVLRLSSNKFSGFIT----LEMFKDLRQL 504
SL+ +D+S N + + + L L L+ N F+ L+ KD RQL
Sbjct: 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 598
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
L +L+L N + + +FL L++L L +FL + +L +LD+S
Sbjct: 399 LKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 297 LTGSLPEFPPSSQLKVIELSETRFSGK-LPDSINNLALLEDLELSDCNFFGSIPSSFGNL 355
F S L+V++++ F LPD L L L+LS C P++F +L
Sbjct: 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517
Query: 356 TELINIDFSRNNF 368
+ L ++ S NNF
Sbjct: 518 SSLQVLNMSHNNF 530
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 868 TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG 927
T +D+S Q E P +L VLNMS+NNF L L LD S N +
Sbjct: 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556
Query: 928 KIPEKLATL-NFLSVLKLSQN 947
++L + L+ L L+QN
Sbjct: 557 SKKQELQHFPSSLAFLNLTQN 577
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 10/167 (5%)
Query: 235 LQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP-EKIFL-MPSLCFLDVS 292
L+ L HL+ ++L ++ +F S ++L + + RV IF + SL L ++
Sbjct: 419 LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 477
Query: 293 SNSNLTGSLPE-FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSS 351
NS LP+ F L ++LS+ + P + N+L+ L+ L +S NFF
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Query: 352 FGNLTELINIDFSRNNFSGS----LPSFASSNKVISLKFAHNSFTGT 394
+ L L +D+S N+ S L F SS ++L N F T
Sbjct: 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL--TQNDFACT 582
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 402 QLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLRE---M 458
+L L L+L+ N L GI P + I+ L LG+NK +++ N L L + +
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK----IKEISNKMFLGLHQLKTL 107
Query: 459 DFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKD 500
+ N++ ++P S + L L L+SN F+ L F +
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 27/160 (16%)
Query: 284 PSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCN 343
P++C + ++ L E P L EL LL D EL
Sbjct: 3 PAMCHCEGTTVDCTGRGLKEIPRDIPLHTTEL-----------------LLNDNEL---- 41
Query: 344 FFGSIPSS--FGNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGTIPLSYG 400
G I S FG L L+ ++ RN +G P +F ++ + L+ N I
Sbjct: 42 --GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMF 98
Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF 440
L L+ L+L +N + ++P S S+ SL L N F
Sbjct: 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 701 KLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFP 760
++ ++ G +P ++ L+L +N L G P + + ++ L +G+N++
Sbjct: 43 RISSDGLFGRLPHLV-------KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 761 FWLETLPQLRVLVLQSNNYDGSIKDTQTANAFAL--LQIIDISSNNFSGNLPARWFQSW 817
L QL+ L L YD I + L L ++++SN F+ N WF W
Sbjct: 96 KMFLGLHQLKTLNL----YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW 150
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 24/127 (18%)
Query: 79 RTGHVIGLDISSSFITG----GINGSSSLFDLQ------------------RLQHLNLAD 116
R H++ L++ + +TG G+S + +LQ +L+ LNL D
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 117 NSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLE-ISSLKMLVSLDLSASGLVAPIQLR 175
N + S P F+ L SLT LNL+ + F+ + L + SL+ A+ AP ++R
Sbjct: 112 NQI-SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVR 170
Query: 176 RANLEKL 182
++ L
Sbjct: 171 DVQIKDL 177
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 343 NFFGSIPS-SFGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSY 399
N S+PS +F LT+L + + N +LP+ F + +L N +P+
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGV 104
Query: 400 GDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMD 459
DQL++L L L N L+ + P+ + + L LG N+ L K SL+E+
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELR 163
Query: 460 FSQNKLQGLVPESIF-QIKGLNVLRLSSNKFS-----GFITLEMFKDLR 502
N+L+ VPE F ++ L L+L +N+ F +LE K L+
Sbjct: 164 LYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 44/110 (40%)
Query: 671 FDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNH 730
+L L L N L P S L L L NE V SL+ L L N
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168
Query: 731 LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
L + K T L+ L + NQL ++L +L++L LQ N +D
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGT-VPQVIGNECSLRTLDLSQNH 730
+L LD+S H + + L+VLK+ N F +P + +L LDLSQ
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 731 LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGS 782
L P + + +SL+VL++ NQL + L L+ + L +N +D S
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 849 VTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPAT 908
V NKGL + I T + + NQF +P+ L ++ L ++++SNN +
Sbjct: 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 909 LGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
N+ +L +L LS+N+L P L L +L L N + +P G
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEG 120
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Query: 700 LKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSF 759
L L N+F VP+ + N L +DLS N ++ +S S T L L + N+L
Sbjct: 36 LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 760 PFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRG 819
P + L LR+L L N D S+ N + L + I +N + +W W
Sbjct: 95 PRTFDGLKSLRLLSLHGN--DISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDW-- 150
Query: 820 MKKRTKE 826
+K KE
Sbjct: 151 VKSEYKE 157
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 867 FTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLS 926
T ID+SNN+ + + LL L +S N + P T LK L L L N +S
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 927 GKIPEKLATLNFLSVLKLSQNLLVGEIP 954
+PE N LS L +L +G P
Sbjct: 116 -VVPE--GAFNDLSAL---SHLAIGANP 137
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 112/453 (24%), Positives = 167/453 (36%), Gaps = 84/453 (18%)
Query: 351 SFGNLTELINIDFSRNN-----------FSGSLPSFASSNKVISLKFAHNSFTGTIPLSY 399
SFG L L +IDFS N G SF S A NS + + +
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS--------LAANSLYSRVSVDW 194
Query: 400 GDQL-----ISLQVLDLRNN----SLQGIIPKSLYTKQSIESLLLGQN------KFHGQL 444
G + + L++LD+ N + G ++ Q+ SL+L + FH
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF-SLILAHHIMGAGFGFHNIK 253
Query: 445 EKFQNA----SSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKD 500
+ QN + S+R +D S + L +K L VL L+ NK + I E F
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYG 312
Query: 501 LRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKITEFPNFLRNQTNLF-----HL 555
L L L L PK+ + L I +++QT F L
Sbjct: 313 LDNLQVLNL-SYNLLGELYSSNFYGLPKVAYIDLQKNHIA----IIQDQTFKFLEKLQTL 367
Query: 556 DLSNNRIKG-----EIPNWTWNVGDGKLVHL---NLSHNMLEAFEKPGPNLTSTVLAVLD 607
DL +N + IP+ + KLV L NL+ N++ E NL
Sbjct: 368 DLRDNALTTIHFIPSIPDIF--LSGNKLVTLPKINLTANLIHLSENRLENL--------- 416
Query: 608 LHSNMLQGSFPIPPASIIFLDYSENKFTTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSL 667
++L +P I+ L+ +N+F++ L N L L
Sbjct: 417 ---DILYFLLRVPHLQILILN--QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 668 C-NAFD----LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLR 722
C + F+ LQVL L+ N+L P L+ L L +N TV +L
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLE 529
Query: 723 TLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL 755
LD+S+N L P SL VLD+ N+
Sbjct: 530 ILDISRNQLLAPNPDVF---VSLSVLDITHNKF 559
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 663 IPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLR 722
+P + N +L+VLDLS N LT S+P+ L S LK +N + T+P GN C+L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQ 319
Query: 723 TLDLSQNHLAGSLPKSLSK 741
L + N L K L++
Sbjct: 320 FLGVEGNPLEKQFLKILTE 338
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 866 IFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQL 925
++ ++D+SN Q I + +D L L ++ N+ ++PA + NL L LDLSHN+L
Sbjct: 225 LWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282
Query: 926 SGKIPEKLATLNFLSVLKLSQNLLV 950
+ +P +L + L N++
Sbjct: 283 TS-LPAELGSCFQLKYFYFFDNMVT 306
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 64 STTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSP 123
S + CCS+ D T + LD+S G I S++ L+ LQHL+ ++L
Sbjct: 363 SFSGCCSYS----DLGTNSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415
Query: 124 FPSGFDRLFSLTHLNLSYSG----FSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANL 179
S F L L +L++SY+ F G I L ++SL L +A + L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLK---------MAGNSFKDNTL 465
Query: 180 EKLVKNLTNLEELYLGGIDISGADWG 205
+ N TNL L L + WG
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWG 491
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 256 LTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIEL 315
+NFS LQ+L LS C + + + L L ++ N + S F + L+ +
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 316 SETRFSGKLPDSINNLALLEDLELSDCNFFGS--IPSSFGNLTELINIDFSRN 366
ET+ + I L L+ L ++ NF S +P+ F NLT L+++D S N
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 529 IGTLKLS--SCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG--KLVHLNLS 584
+ TLK++ S K N N TNL LDLS K ++ +W V D +L LN+S
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS----KCQLEQISWGVFDTLHRLQLLNMS 505
Query: 585 HNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP---PASIIFLDYSEN 632
HN L + N + L+ LD N ++ S I P S+ F + + N
Sbjct: 506 HNNLLFLDSSHYNQLYS-LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSY 141
L+ LN+A N ++S P+ F L +L H++LSY
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 64 STTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSP 123
S + CCS+ D T + LD+S G I S++ L+ LQHL+ ++L
Sbjct: 358 SFSGCCSYS----DLGTNSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVT 410
Query: 124 FPSGFDRLFSLTHLNLSYSG----FSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANL 179
S F L L +L++SY+ F G I L ++SL L +A + L
Sbjct: 411 EFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLK---------MAGNSFKDNTL 460
Query: 180 EKLVKNLTNLEELYLGGIDISGADWG 205
+ N TNL L L + WG
Sbjct: 461 SNVFANTTNLTFLDLSKCQLEQISWG 486
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 256 LTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIEL 315
+NFS LQ+L LS C + + + L L ++ N + S F + L+ +
Sbjct: 47 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 106
Query: 316 SETRFSGKLPDSINNLALLEDLELSDCNFFGS--IPSSFGNLTELINIDFSRN 366
ET+ + I L L+ L ++ NF S +P+ F NLT L+++D S N
Sbjct: 107 VETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 529 IGTLKLS--SCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG--KLVHLNLS 584
+ TLK++ S K N N TNL LDLS K ++ +W V D +L LN+S
Sbjct: 445 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS----KCQLEQISWGVFDTLHRLQLLNMS 500
Query: 585 HNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP---PASIIFLDYSEN 632
HN L + N + L+ LD N ++ S I P S+ F + + N
Sbjct: 501 HNNLLFLDSSHYNQLYS-LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 550
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSY 141
L+ LN+A N ++S P+ F L +L H++LSY
Sbjct: 125 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 157
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 107/266 (40%), Gaps = 27/266 (10%)
Query: 355 LTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNN 414
L L I+FS N + P + K++ + +N PL+ L +L L L NN
Sbjct: 62 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLFNN 117
Query: 415 SLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGLVPESI 473
+ I P L ++ L L N + S L SL++++FS N++ L P +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLNFSSNQVTDLKP--L 169
Query: 474 FQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLK 533
+ L L +SSNK S L +L L + L
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESL------IATNNQISDITPLGILTNLDELS 223
Query: 534 LSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEK 593
L+ ++ + L + TNL LDL+NN+I P G KL L L N +
Sbjct: 224 LNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS- 277
Query: 594 PGPNLTSTVLAVLDLHSNMLQGSFPI 619
P LT+ L L+L+ N L+ PI
Sbjct: 278 PLAGLTA--LTNLELNENQLEDISPI 301
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 860 LAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919
LAK LT S+ +NNQ P LG L L+++ N K TL +L L LD
Sbjct: 191 LAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 245
Query: 920 LSHNQLSGKIPEKLATLNFLSVLKLSQN 947
L++NQ+S P L+ L L+ LKL N
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGAN 271
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 19/210 (9%)
Query: 307 SSQLKVIELSETRFSGKLPDSINNLAL--LEDLELSDCNFFG-SIPSSFGNLTELINIDF 363
++ LK ++LS F+G + S N L L LE L+ N S S F +L LI +D
Sbjct: 77 TTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 364 S----RNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGI 419
S R F+G +S + LK A NSF +L +L LDL L+ +
Sbjct: 134 SHTHTRVAFNGIFNGLSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 420 IPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQI-KG 478
P + + S++ L + N F L+ F SL+ +D+S N + + +
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249
Query: 479 LNVLRLSSNKFSGFIT----LEMFKDLRQL 504
L L L+ N F+ L+ KD RQL
Sbjct: 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQL 279
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 31/169 (18%)
Query: 229 HSSLSKLQLLTHLNLDGNDLS----SEVPDFLTNFSSLQYLHLSLCGLY----------- 273
H KL LT L+L N LS DF T +SL+YL LS G+
Sbjct: 45 HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT--TSLKYLDLSFNGVITMSSNFLGLEQ 102
Query: 274 -----------GRVPE-KIFL-MPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRF 320
++ E +FL + +L +LD+S F S L+V++++ F
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 321 SGK-LPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNF 368
LPD L L L+LS C P++F +L+ L ++ S NNF
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEF--LGTVPQVIGNECSLRTLDLSQN 729
+L LDLS L P+ S + L+VL + +N F L T P N SL+ LD S N
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYSLN 233
Query: 730 HLAGSLPKSLSKC-TSLEVLDVGKNQL-----NGSFPFWLETLPQLRVLV 773
H+ S + L +SL L++ +N + SF W++ QL V V
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 283
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 90/212 (42%), Gaps = 28/212 (13%)
Query: 763 LETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDIS-------SNNFSG--NLPARW 813
+ L QL L L SN +Q+ L+ +D+S S+NF G L
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107
Query: 814 FQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLS-MELAKIL-------- 864
FQ +K+ ++ S + +YL++S+ + + + + GLS +E+ K+
Sbjct: 108 FQ-HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166
Query: 865 --TIFTSI------DVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELG 916
IFT + D+S Q E P +L VLNMS+NNF L L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 917 SLDLSHNQLSGKIPEKLATL-NFLSVLKLSQN 947
LD S N + ++L + L+ L L+QN
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 235 LQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP-EKIFL-MPSLCFLDVS 292
L+ L HL+ ++L ++ +F S ++L + + RV IF + SL L ++
Sbjct: 100 LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 293 SNSNLTGSLPE-FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSS 351
NS LP+ F L ++LS+ + P + N+L+ L+ L +S NFF
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Query: 352 FGNLTELINIDFSRNNFSGS----LPSFASSNKVISLKFAHNSFTGTI 395
+ L L +D+S N+ S L F SS + L N F T
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSS--LAFLNLTQNDFACTC 264
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 106/266 (39%), Gaps = 27/266 (10%)
Query: 355 LTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNN 414
L L I+FS N + P + K++ + +N PL+ L +L L L NN
Sbjct: 62 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLFNN 117
Query: 415 SLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGLVPESI 473
+ I P L ++ L L N + S L SL+++ FS N++ L P +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFSSNQVTDLKP--L 169
Query: 474 FQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLK 533
+ L L +SSNK S L +L L + L
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESL------IATNNQISDITPLGILTNLDELS 223
Query: 534 LSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEK 593
L+ ++ + L + TNL LDL+NN+I P G KL L L N +
Sbjct: 224 LNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS- 277
Query: 594 PGPNLTSTVLAVLDLHSNMLQGSFPI 619
P LT+ L L+L+ N L+ PI
Sbjct: 278 PLAGLTA--LTNLELNENQLEDISPI 301
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 860 LAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919
LAK LT S+ +NNQ P LG L L+++ N K TL +L L LD
Sbjct: 191 LAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 245
Query: 920 LSHNQLSGKIPEKLATLNFLSVLKLSQN 947
L++NQ+S P L+ L L+ LKL N
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGAN 271
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 106/266 (39%), Gaps = 27/266 (10%)
Query: 355 LTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNN 414
L L I+FS N + P + K++ + +N PL+ L +L L L NN
Sbjct: 62 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLFNN 117
Query: 415 SLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGLVPESI 473
+ I P L ++ L L N + S L SL+++ FS N++ L P +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFSSNQVTDLKP--L 169
Query: 474 FQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLK 533
+ L L +SSNK S L +L L + L
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESL------IATNNQISDITPLGILTNLDELS 223
Query: 534 LSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEK 593
L+ ++ + L + TNL LDL+NN+I P G KL L L N +
Sbjct: 224 LNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS- 277
Query: 594 PGPNLTSTVLAVLDLHSNMLQGSFPI 619
P LT+ L L+L+ N L+ PI
Sbjct: 278 PLAGLTA--LTNLELNENQLEDISPI 301
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 860 LAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919
LAK LT S+ +NNQ P LG L L+++ N K TL +L L LD
Sbjct: 191 LAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 245
Query: 920 LSHNQLSGKIPEKLATLNFLSVLKLSQN 947
L++NQ+S P L+ L L+ LKL N
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGAN 271
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 17/189 (8%)
Query: 408 VLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQG 467
+LDL+NN + + Q + +L+L NK EK + L+++ S+N L
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKNHLVE 116
Query: 468 L---VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXX 524
+ +P S+ + LR+ N+ + +F LR + +E+
Sbjct: 117 IPPNLPSSLVE------LRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 525 XXPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKG-EIPNWTWNVGDGKLVHLNL 583
K+ L++S K+T P L N HLD +N+I+ E+ + + KL L L
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLD--HNKIQAIELEDL---LRYSKLYRLGL 224
Query: 584 SHNMLEAFE 592
HN + E
Sbjct: 225 GHNQIRMIE 233
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 119/310 (38%), Gaps = 52/310 (16%)
Query: 311 KVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSG 370
+V L R K D + L L + S+ P NLT+L++I + N +
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 99
Query: 371 SLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSI 430
P A+ + L +N T PL L +L L+L +N++ I S T
Sbjct: 100 ITP-LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISDISALSGLTS--- 152
Query: 431 ESLLLGQNKFHGQLEKFQNASSLS-LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKF 489
L Q F Q+ + ++L+ L +D S NK+ + + ++ L L ++N+
Sbjct: 153 ----LQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 206
Query: 490 SGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKITEFPNFLRNQ 549
S L + +L +L IGTL +
Sbjct: 207 SDITPLGILTNLDELS---------------LNGNQLKDIGTLA--------------SL 237
Query: 550 TNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLH 609
TNL LDL+NN+I P G KL L L N + P LT+ L L+L+
Sbjct: 238 TNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS-PLAGLTA--LTNLELN 290
Query: 610 SNMLQGSFPI 619
N L+ PI
Sbjct: 291 ENQLEDISPI 300
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 860 LAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919
LAK LT S+ +NNQ P LG L L+++ N K TL +L L LD
Sbjct: 190 LAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 244
Query: 920 LSHNQLSGKIPEKLATLNFLSVLKLSQN 947
L++NQ+S P L+ L L+ LKL N
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGAN 270
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 119/310 (38%), Gaps = 52/310 (16%)
Query: 311 KVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSG 370
+V L R K D + L L + S+ P NLT+L++I + N +
Sbjct: 46 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 103
Query: 371 SLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSI 430
P A+ + L +N T PL L +L L+L +N++ I S T
Sbjct: 104 ITP-LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISDISALSGLTS--- 156
Query: 431 ESLLLGQNKFHGQLEKFQNASSLS-LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKF 489
L Q F Q+ + ++L+ L +D S NK+ + + ++ L L ++N+
Sbjct: 157 ----LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 210
Query: 490 SGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKITEFPNFLRNQ 549
S L + +L +L IGTL +
Sbjct: 211 SDITPLGILTNLDELS---------------LNGNQLKDIGTLA--------------SL 241
Query: 550 TNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLH 609
TNL LDL+NN+I P G KL L L N + P LT+ L L+L+
Sbjct: 242 TNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS-PLAGLTA--LTNLELN 294
Query: 610 SNMLQGSFPI 619
N L+ PI
Sbjct: 295 ENQLEDISPI 304
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 860 LAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919
LAK LT S+ +NNQ P LG L L+++ N K TL +L L LD
Sbjct: 194 LAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 248
Query: 920 LSHNQLSGKIPEKLATLNFLSVLKLSQN 947
L++NQ+S P L+ L L+ LKL N
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGAN 274
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 119/310 (38%), Gaps = 52/310 (16%)
Query: 311 KVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSG 370
+V L R K D + L L + S+ P NLT+L++I + N +
Sbjct: 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104
Query: 371 SLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSI 430
P A+ + L +N T PL L +L L+L +N++ I S T
Sbjct: 105 ITP-LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISDISALSGLTS--- 157
Query: 431 ESLLLGQNKFHGQLEKFQNASSLS-LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKF 489
L Q F Q+ + ++L+ L +D S NK+ + + ++ L L ++N+
Sbjct: 158 ----LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211
Query: 490 SGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKITEFPNFLRNQ 549
S L + +L +L IGTL +
Sbjct: 212 SDITPLGILTNLDELS---------------LNGNQLKDIGTLA--------------SL 242
Query: 550 TNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLH 609
TNL LDL+NN+I P G KL L L N + P LT+ L L+L+
Sbjct: 243 TNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS-PLAGLTA--LTNLELN 295
Query: 610 SNMLQGSFPI 619
N L+ PI
Sbjct: 296 ENQLEDISPI 305
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 860 LAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919
LAK LT S+ +NNQ P LG L L+++ N K TL +L L LD
Sbjct: 195 LAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 249
Query: 920 LSHNQLSGKIPEKLATLNFLSVLKLSQN 947
L++NQ+S P L+ L L+ LKL N
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGAN 275
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 119/310 (38%), Gaps = 52/310 (16%)
Query: 311 KVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSG 370
+V L R K D + L L + S+ P NLT+L++I + N +
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 99
Query: 371 SLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSI 430
P A+ + L +N T PL L +L L+L +N++ I S T
Sbjct: 100 ITP-LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISDISALSGLTS--- 152
Query: 431 ESLLLGQNKFHGQLEKFQNASSLS-LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKF 489
L Q F Q+ + ++L+ L +D S NK+ + + ++ L L ++N+
Sbjct: 153 ----LQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 206
Query: 490 SGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKITEFPNFLRNQ 549
S L + +L +L IGTL +
Sbjct: 207 SDITPLGILTNLDELS---------------LNGNQLKDIGTLA--------------SL 237
Query: 550 TNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLH 609
TNL LDL+NN+I P G KL L L N + P LT+ L L+L+
Sbjct: 238 TNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS-PLAGLTA--LTNLELN 290
Query: 610 SNMLQGSFPI 619
N L+ PI
Sbjct: 291 ENQLEDISPI 300
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 860 LAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919
LAK LT S+ +NNQ P LG L L+++ N K TL +L L LD
Sbjct: 190 LAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 244
Query: 920 LSHNQLSGKIPEKLATLNFLSVLKLSQN 947
L++NQ+S P L+ L L+ LKL N
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGAN 270
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 580 HLNLSHNMLEAFEKPGPNLTS-TVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTT 636
HL+ + ++A+++P +L S LA +D N FP PPA I +D S N T
Sbjct: 135 HLDHTGKRVDAYDRPELSLGSYEFLATVDYCKN---NKFPSPPAFIFMIDVSYNAIRT 189
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 863 ILTIFTSIDVSNNQFEG-EIPEML--GDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919
I IF+++++ N G + ML L L+ SNN + G+L EL +L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 920 LSHNQLS--GKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
L NQL KI E + L L +SQN + + +G
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 24/121 (19%)
Query: 673 LQVLDLSDNHL-----------TGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSL 721
LQ LD+S N + T S+ S +SSNIL + F P++
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL-----TDTIFRCLPPRI------- 423
Query: 722 RTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDG 781
+ LDL N + S+PK + K +L+ L+V NQL + L L+ + L +N +D
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482
Query: 782 S 782
S
Sbjct: 483 S 483
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 684 TGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCT 743
S C VS + L+ L VP + ++ L+L+ N L + ++ +
Sbjct: 6 ASSTTKCTVSHEVADCSHLK----LTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYS 59
Query: 744 SLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSN 777
L LDVG N ++ P + LP L+VL LQ N
Sbjct: 60 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 93
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 893 VLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
VLN+++N + A +L SLD+ N +S PE L L VL L N L
Sbjct: 39 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 684 TGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCT 743
S C VS + L+ L VP + ++ L+L+ N L + ++ +
Sbjct: 1 ASSTTKCTVSHEVADCSHLK----LTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYS 54
Query: 744 SLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSN 777
L LDVG N ++ P + LP L+VL LQ N
Sbjct: 55 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 88
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 893 VLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
VLN+++N + A +L SLD+ N +S PE L L VL L N L
Sbjct: 34 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 394 TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTK-QSIESLLLGQNKFH----GQLEKFQ 448
++P D+L +L+ L L N LQ + P ++ K ++ L L N+ G +K
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157
Query: 449 NASSLSLREMDFSQNKLQGLVPESIF-QIKGLNVLRLSSNKF 489
N L E+D S N+LQ L PE +F ++ L LRL N+
Sbjct: 158 N-----LTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQL 193
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 230 SSLSKLQLLTHLNLDGNDLSS---EVPDFLTNFSSLQYLHLSLCGLYGRVPEKIF-LMPS 285
S+L +L LT+L L GN L S V D LTN L + L L P+ +F + +
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL----PDGVFDKLTN 134
Query: 286 LCFLDVSSNSNLTGSLPE--FPPSSQLKVIELSETRFSGKLPDSI-NNLALLEDLELSDC 342
L +L+++ N SLP+ F + L ++LS + LP+ + + L L+DL L
Sbjct: 135 LTYLNLAHNQ--LQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQ- 190
Query: 343 NFFGSIPSS-FGNLTELINIDFSRNNFSGSLP 373
N S+P F LT L I N + + P
Sbjct: 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 103 LFD-LQRLQHLNLADNSLYSSPFPSG-FDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVS 160
+FD L L+ L L +N L S P G FD+L +LT+LNL+++ L L
Sbjct: 104 VFDKLTNLKELVLVENQLQS--LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161
Query: 161 LDLSASGL 168
LDLS + L
Sbjct: 162 LDLSYNQL 169
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 381 VISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF 440
+ ++ N+ IP L+ +DL NN + + P + +S+ SL+L NK
Sbjct: 34 ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 441 HGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKD 500
+L K SL+ + + NK+ L ++ + LN+L L NK I F
Sbjct: 93 -TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSP 150
Query: 501 LRQLGTLEL 509
LR + T+ L
Sbjct: 151 LRAIQTMHL 159
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 880 EIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFL 939
EIP L + + + + N K P K+L +DLS+NQ+S P+ L L
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 940 SVLKLSQNLLVGEIPR 955
+ L L N + E+P+
Sbjct: 83 NSLVLYGNKIT-ELPK 97
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 381 VISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF 440
+ ++ N+ IP L+ +DL NN + + P + +S+ SL+L NK
Sbjct: 34 ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 441 HGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKD 500
+L K SL+ + + NK+ L ++ + LN+L L NK I F
Sbjct: 93 -TELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSP 150
Query: 501 LRQLGTLEL 509
LR + T+ L
Sbjct: 151 LRAIQTMHL 159
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 880 EIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFL 939
EIP L + + + + N K P K+L +DLS+NQ+S P+ L L
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 940 SVLKLSQNLLVGEIPR 955
+ L L N + E+P+
Sbjct: 83 NSLVLYGNKIT-ELPK 97
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 690 CLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLD 749
C VS + L+ L VP + ++ L+L+ N L + ++ + L LD
Sbjct: 2 CTVSHEVADCSHLK----LTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55
Query: 750 VGKNQLNGSFPFWLETLPQLRVLVLQSN 777
VG N ++ P + LP L+VL LQ N
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHN 83
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 893 VLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
VLN+++N + A +L SLD+ N +S PE L L VL L N L
Sbjct: 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 2/185 (1%)
Query: 304 FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSI-PSSFGNLTELINID 362
F L ++ L +G + L LLE L+LSD + P++F L L +
Sbjct: 51 FQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLH 110
Query: 363 FSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPK 422
R P + + ++ +P + L +L L L N + +
Sbjct: 111 LDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEH 170
Query: 423 SLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVL 482
+ S++ LLL QN ++ L + N L L E + ++ L L
Sbjct: 171 AFRGLHSLDRLLLHQNHV-ARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYL 229
Query: 483 RLSSN 487
RL+ N
Sbjct: 230 RLNDN 234
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 455 LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLEL 509
LR+++FS NK+ + + G+N + L+SN+ + +MFK L L TL L
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLML 112
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 102/265 (38%), Gaps = 31/265 (11%)
Query: 300 SLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELI 359
++PE P+ + ++++L + R D + LE+LEL++ P +F NL L
Sbjct: 25 AVPEGIPT-ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 360 NIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGI 419
+ N IPL L +L LD+ N + +
Sbjct: 84 TLGLRSNRLK------------------------LIPLGVFTGLSNLTKLDISENKIVIL 119
Query: 420 IPKSLYTKQSIESLLLGQNKF-HGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKG 478
+ +++SL +G N + F +SL ++ + L + E++ + G
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE--QLTLEKCNLTSIPTEALSHLHG 177
Query: 479 LNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCK 538
L VLRL + I FK L +L LE+ + +L ++ C
Sbjct: 178 LIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCN 235
Query: 539 ITEFPNF-LRNQTNLFHLDLSNNRI 562
+T P +R+ L L+LS N I
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPI 260
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 115/294 (39%), Gaps = 80/294 (27%)
Query: 673 LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLA 732
LQ LDL+ HL+ +PS LV + LK L L N+F N SL L + N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN--- 335
Query: 733 GSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA- 791
+ L++G LE L LR L D S D +T++
Sbjct: 336 ------------TKRLELGTG--------CLENLENLREL-------DLSHDDIETSDCC 368
Query: 792 -FALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVT 850
L + + S N S N P + +T+ +E L+ + L + L +D+ +
Sbjct: 369 NLQLRNLSHLQSLNLSYNEP---------LSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 851 LMNKGLSMELAKILTIFTSI-DVSNNQFEGEIPEMLGDFDALLVLNMSNNNF-KGQIPAT 908
++ L K+L + S+ D+S+ Q +P AL LN+ N+F KG I T
Sbjct: 420 PFQ---NLHLLKVLNLSHSLLDISSEQLFDGLP-------ALQHLNLQGNHFPKGNIQKT 469
Query: 909 --------------------------LGNLKELGSLDLSHNQLSGKIPEKLATL 936
+LK + +DLSHN+L+ E L+ L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
D +L LS+N L + L+ L L L E T QV G L TLDLS N L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL 89
Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPF-WLETLPQLRVLVLQSN 777
SLP +L VLDV N+L S P L L +L+ L L+ N
Sbjct: 90 Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
D +L LS+N L + L+ L L L E T QV G L TLDLS N L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL 89
Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPF-WLETLPQLRVLVLQSN 777
SLP +L VLDV N+L S P L L +L+ L L+ N
Sbjct: 90 Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
D +L LS+N L + L+ L L L E T QV G L TLDLS N L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL 89
Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPF-WLETLPQLRVLVLQSN 777
SLP +L VLDV N+L S P L L +L+ L L+ N
Sbjct: 90 Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 221 DCHVAGPIHSSLSKLQLLTHLNLDGN---DLSSEVP-DFLTNFSSLQYLHLSLCGLYGRV 276
D V+G + K LTHLNL GN DLS+ P L N SL + + L
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132
Query: 277 PEKIFLMPSLCFLD 290
L+P L +LD
Sbjct: 133 ENVFKLLPQLTYLD 146
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
+L+ LDLS NHL L+VL L NN + + L+ L LSQN +
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 732 AG---SLPKSLSKCTSLEVLDVGKNQL 755
+ L K +K L +LD+ N+L
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 10/180 (5%)
Query: 289 LDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSI 348
LD+S+N S + L+ + L+ + DS ++L LE L+LS N+ ++
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNL 89
Query: 349 PSS-FGNLTELINIDFSRNNFS--GSLPSFASSNKVISLKFAH-NSFTGTIPLSYGDQLI 404
SS F L+ L ++ N + G F+ K+ L+ + ++FT + L
Sbjct: 90 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LT 148
Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASS----LSLREMDF 460
L+ L++ + LQ PKSL + Q++ L+L + LE F + +S L LR+ D
Sbjct: 149 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 208
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
D +L LS+N L + L+ L L L E T QV G L TLDLS N L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCEL--TKLQVDGTLPVLGTLDLSHNQL 89
Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPF-WLETLPQLRVLVLQSN 777
SLP +L VLDV N+L S P L L +L+ L L+ N
Sbjct: 90 Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
D +L LS+N L + L+ L L L E T QV G L TLDLS N L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCEL--TKLQVDGTLPVLGTLDLSHNQL 89
Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPF-WLETLPQLRVLVLQSN 777
SLP +L VLDV N+L S P L L +L+ L L+ N
Sbjct: 90 Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 63/250 (25%)
Query: 258 NFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTG--------SLPEFPPSSQ 309
N L + + C ++P + +P ++V+ N ++G +L + P +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 310 LKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFS 369
+++I + NNL + +S +L ++ N
Sbjct: 307 IQIIYIG-----------YNNLKTF------------PVETSLQKXKKLGXLECLYNQLE 343
Query: 370 GSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQS 429
G LP+F S K+ SL A+N T IP ++ +T+Q
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQIT-EIPANFCG-----------------------FTEQ- 378
Query: 430 IESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKL-----QGLVPESIFQIKGLNV--L 482
+E+L NK F S +DFS N++ + P KG+NV +
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 483 RLSSNKFSGF 492
LS+N+ S F
Sbjct: 439 NLSNNQISKF 448
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 889 DALLVLNMSNNNFKG-QIPATLGNLKELGSLDLSHNQLSGKIPE-----KLATLNF 938
+ + ++ + NN K + +L K+LG L+ +NQL GK+P KLA+LN
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNL 360
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 343 NFFGSIP-SSFGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSY 399
N S+P F +LT+L + N SLPS F K+ L+ N +IP
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGA 150
Query: 400 GDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF 440
D+L +LQ L L N LQ + + ++++ L N+F
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 68 CCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSG 127
C + G TC+ V S + GI + DLQ L+D +
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDAT--------- 54
Query: 128 FDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLE-KLVKNL 186
F L LT LNL Y+ ++ +L V DL+ G + + A+L + +L
Sbjct: 55 FRGLTKLTWLNLDYN--------QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106
Query: 187 TNLEELYLGG 196
T L++LYLGG
Sbjct: 107 TQLDKLYLGG 116
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
D +L LS+N L + L+ L L L E T QV G L TLDLS N L
Sbjct: 33 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCEL--TKLQVDGTLPVLGTLDLSHNQL 90
Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPF-WLETLPQLRVLVLQSN 777
SLP +L VLDV N+L S P L L +L+ L L+ N
Sbjct: 91 Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 135
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 119
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 343 NFFGSIP-SSFGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSY 399
N S+P F +LT+L + N SLPS F K+ L+ N +IP
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGA 150
Query: 400 GDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF 440
D+L +LQ L L N LQ + + ++++ L N+F
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 68 CCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSG 127
C + G TC+ V S + GI + DLQ L+D +
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDAT--------- 54
Query: 128 FDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLE-KLVKNL 186
F L LT LNL Y+ ++ +L V DL+ G + + A+L + +L
Sbjct: 55 FRGLTKLTWLNLDYN--------QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106
Query: 187 TNLEELYLGG 196
T L++LYLGG
Sbjct: 107 TQLDKLYLGG 116
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
G L LG+LDLSHNQL +P TL L+VL +S N L +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 10/180 (5%)
Query: 289 LDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSI 348
LD+S+N S + L+ + L+ + DS ++L LE L+LS N+ ++
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNL 115
Query: 349 PSS-FGNLTELINIDFSRNNFS--GSLPSFASSNKVISLKFAH-NSFTGTIPLSYGDQLI 404
SS F L+ L ++ N + G F+ K+ L+ + ++FT + L
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LT 174
Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASS----LSLREMDF 460
L+ L++ + LQ PKSL + Q++ L+L + LE F + +S L LR+ D
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 103 LFD-LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHL 137
+FD L +L+ L+L DN L S P FDRL SLTH+
Sbjct: 176 VFDKLTQLKQLSLNDNQLKSVP-DGVFDRLTSLTHI 210
>pdb|3R50|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|E Chain E, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
Length = 160
Score = 29.6 bits (65), Expect = 9.3, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 299 GSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTEL 358
G F P L I LS FSG ++N +++ +D G + TE
Sbjct: 27 GQFWSFRPVRPLNKIVLS---FSGSPDQTLNLISITFSSNPTDIITVGGVGPEPLTYTET 83
Query: 359 INIDFSRNNFSGSLPSFASSNKVISLKFAHN 389
+NID SG + ++ N + S+KF N
Sbjct: 84 VNIDGDIIEISGMIANYKGYNVIRSIKFTTN 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,948,203
Number of Sequences: 62578
Number of extensions: 1183122
Number of successful extensions: 3589
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2502
Number of HSP's gapped (non-prelim): 591
length of query: 1055
length of database: 14,973,337
effective HSP length: 109
effective length of query: 946
effective length of database: 8,152,335
effective search space: 7712108910
effective search space used: 7712108910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)