Query 001554
Match_columns 1055
No_of_seqs 999 out of 6017
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-72 7.8E-77 719.6 51.2 584 33-977 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-56 3.2E-61 575.1 41.6 273 651-974 312-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.5E-36 7.6E-41 323.0 7.8 382 334-819 80-465 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 2.6E-38 5.5E-43 325.5 -15.1 487 84-756 48-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.4E-34 3.1E-39 310.6 8.2 363 214-583 80-446 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.8E-37 6.1E-42 317.9 -12.9 479 187-780 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.1E-34 2.3E-39 328.7 -5.0 480 266-948 4-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3E-34 6.5E-39 325.1 -4.7 426 229-803 84-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 6.1E-32 1.3E-36 291.6 -4.2 368 104-513 4-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.4E-31 7.4E-36 285.8 -3.9 361 309-778 8-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 5.4E-25 1.2E-29 227.6 -5.3 118 394-513 81-199 (498)
12 KOG4237 Extracellular matrix p 99.9 1.8E-24 3.8E-29 223.8 -3.0 416 454-947 68-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 4.8E-21 1E-25 246.1 26.7 362 79-488 530-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 1.7E-21 3.7E-26 230.9 17.1 93 672-780 283-375 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 3E-21 6.5E-26 228.8 17.9 242 623-956 223-464 (788)
16 PLN03210 Resistant to P. syrin 99.9 2.9E-20 6.3E-25 239.0 27.1 339 206-586 552-903 (1153)
17 PRK15370 E3 ubiquitin-protein 99.8 1.8E-19 4E-24 215.6 11.5 76 672-756 242-317 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 2.9E-23 208.1 13.0 291 551-954 179-474 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-18 3.4E-23 194.2 0.4 135 646-780 22-178 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.3E-18 7.1E-23 191.6 1.0 257 652-952 3-293 (319)
21 PLN03150 hypothetical protein; 99.7 1.5E-16 3.3E-21 190.6 9.9 118 866-983 419-538 (623)
22 KOG0617 Ras suppressor protein 99.6 2.4E-17 5.1E-22 151.6 -3.6 165 694-937 32-196 (264)
23 KOG0617 Ras suppressor protein 99.6 6.4E-17 1.4E-21 148.9 -6.0 167 102-282 28-194 (264)
24 PLN03150 hypothetical protein; 99.5 8.2E-14 1.8E-18 167.2 13.6 128 29-167 366-501 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 7.6E-13 1.7E-17 144.4 -4.5 114 662-780 89-202 (722)
26 KOG0532 Leucine-rich repeat (L 99.1 2.5E-12 5.4E-17 140.5 -3.0 123 650-778 146-271 (722)
27 COG4886 Leucine-rich repeat (L 99.1 9.5E-11 2.1E-15 135.0 7.3 102 675-780 97-199 (394)
28 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.8E-15 133.9 7.1 199 652-933 98-297 (394)
29 KOG1909 Ran GTPase-activating 99.1 6.7E-12 1.5E-16 129.9 -3.4 38 331-368 269-310 (382)
30 KOG1909 Ran GTPase-activating 99.0 1.9E-11 4.2E-16 126.5 -3.2 241 81-344 30-310 (382)
31 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.3E-15 124.3 1.8 218 129-370 118-340 (505)
32 KOG3207 Beta-tubulin folding c 99.0 7.8E-11 1.7E-15 125.3 0.1 209 307-563 120-339 (505)
33 PF14580 LRR_9: Leucine-rich r 98.9 9.3E-10 2E-14 107.9 5.3 111 102-225 14-126 (175)
34 PF14580 LRR_9: Leucine-rich r 98.9 7.9E-10 1.7E-14 108.4 3.9 124 670-799 18-146 (175)
35 KOG1259 Nischarin, modulator o 98.9 1E-09 2.3E-14 110.7 3.9 207 323-540 205-412 (490)
36 PF08263 LRRNT_2: Leucine rich 98.9 1.8E-09 3.9E-14 79.2 4.1 40 34-77 2-43 (43)
37 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.4E-14 110.5 1.4 131 672-809 285-415 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.7E-13 125.0 6.3 200 82-298 524-731 (889)
39 KOG0531 Protein phosphatase 1, 98.7 2.8E-09 6.2E-14 122.8 -0.6 241 650-954 75-322 (414)
40 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.7E-13 82.0 3.2 59 890-948 2-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.4E-13 81.4 3.6 61 865-925 1-61 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.6 1.1E-08 2.4E-13 125.5 2.8 252 81-346 545-808 (889)
43 KOG2120 SCF ubiquitin ligase, 98.6 9.7E-10 2.1E-14 111.1 -5.5 180 108-294 186-373 (419)
44 KOG0531 Protein phosphatase 1, 98.6 4.7E-09 1E-13 121.0 -1.1 151 105-273 70-221 (414)
45 KOG2120 SCF ubiquitin ligase, 98.5 2.7E-09 5.9E-14 107.9 -6.2 212 70-295 127-349 (419)
46 KOG4579 Leucine-rich repeat (L 98.3 3.9E-08 8.5E-13 88.3 -3.9 88 865-956 53-141 (177)
47 COG5238 RNA1 Ran GTPase-activa 98.2 1.7E-07 3.7E-12 93.9 -1.0 214 81-294 30-282 (388)
48 KOG1859 Leucine-rich repeat pr 98.1 1.3E-07 2.8E-12 106.8 -5.2 197 308-515 84-292 (1096)
49 KOG1859 Leucine-rich repeat pr 98.0 1.4E-07 3.1E-12 106.5 -7.3 128 307-441 163-292 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.0 9.9E-07 2.2E-11 88.6 -1.2 40 330-369 212-255 (388)
51 KOG2982 Uncharacterized conser 97.9 2E-06 4.4E-11 87.5 0.2 117 149-270 38-156 (418)
52 KOG2982 Uncharacterized conser 97.9 2.3E-06 4.9E-11 87.2 -0.5 64 453-516 199-263 (418)
53 PF12799 LRR_4: Leucine Rich r 97.8 1.2E-05 2.6E-10 59.0 2.9 36 890-926 2-37 (44)
54 KOG4341 F-box protein containi 97.8 1.7E-06 3.6E-11 92.5 -3.6 183 107-296 138-332 (483)
55 KOG4341 F-box protein containi 97.8 9.1E-07 2E-11 94.4 -5.8 291 72-367 126-437 (483)
56 KOG4579 Leucine-rich repeat (L 97.8 8.4E-07 1.8E-11 79.9 -5.2 134 673-812 29-165 (177)
57 PF12799 LRR_4: Leucine Rich r 97.7 2.2E-05 4.8E-10 57.6 2.9 38 913-951 1-38 (44)
58 KOG3665 ZYG-1-like serine/thre 97.6 1.1E-05 2.4E-10 96.9 -0.3 107 187-295 122-231 (699)
59 PRK15386 type III secretion pr 97.5 0.00034 7.4E-09 77.4 9.8 76 691-779 48-124 (426)
60 KOG3665 ZYG-1-like serine/thre 97.5 4.1E-05 9E-10 92.1 2.8 150 131-289 121-280 (699)
61 PRK15386 type III secretion pr 97.5 0.00044 9.6E-09 76.6 9.4 56 498-560 48-104 (426)
62 KOG1644 U2-associated snRNP A' 97.4 0.00026 5.7E-09 68.8 5.4 105 454-561 43-151 (233)
63 KOG1644 U2-associated snRNP A' 97.1 0.00068 1.5E-08 66.0 5.1 90 451-540 62-153 (233)
64 PF13306 LRR_5: Leucine rich r 96.7 0.0042 9.2E-08 58.6 7.1 83 665-751 29-111 (129)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.4E-08 66.5 2.9 60 106-168 42-103 (260)
66 KOG2123 Uncharacterized conser 96.4 0.00017 3.6E-09 73.3 -4.7 80 154-242 39-123 (388)
67 PF13306 LRR_5: Leucine rich r 96.2 0.012 2.6E-07 55.5 6.6 60 207-268 7-66 (129)
68 KOG1947 Leucine rich repeat pr 96.1 0.00062 1.4E-08 81.0 -3.0 38 186-223 268-306 (482)
69 PF00560 LRR_1: Leucine Rich R 96.1 0.0022 4.8E-08 39.1 0.7 19 891-910 2-20 (22)
70 KOG2739 Leucine-rich acidic nu 96.0 0.0047 1E-07 63.1 3.2 68 687-756 35-104 (260)
71 PF00560 LRR_1: Leucine Rich R 96.0 0.0029 6.2E-08 38.6 0.8 21 914-935 1-21 (22)
72 KOG1947 Leucine rich repeat pr 95.8 0.0012 2.7E-08 78.4 -2.4 94 179-272 206-307 (482)
73 KOG2123 Uncharacterized conser 95.8 0.00037 8.1E-09 70.8 -5.7 82 697-782 21-103 (388)
74 KOG4308 LRR-containing protein 91.6 0.002 4.3E-08 74.5 -11.6 134 213-370 145-304 (478)
75 KOG4308 LRR-containing protein 91.0 0.0037 8E-08 72.3 -10.2 187 109-298 89-304 (478)
76 PF13504 LRR_7: Leucine rich r 90.1 0.18 4E-06 28.4 1.3 16 528-543 2-17 (17)
77 PF13504 LRR_7: Leucine rich r 88.9 0.25 5.4E-06 27.9 1.2 10 915-924 3-12 (17)
78 KOG0473 Leucine-rich repeat pr 88.5 0.018 3.8E-07 57.5 -6.0 83 80-168 41-123 (326)
79 KOG0473 Leucine-rich repeat pr 88.0 0.02 4.4E-07 57.0 -6.0 84 864-950 41-124 (326)
80 PF13516 LRR_6: Leucine Rich r 86.8 0.12 2.7E-06 32.1 -1.0 19 913-931 2-20 (24)
81 smart00369 LRR_TYP Leucine-ric 84.7 0.72 1.6E-05 29.3 1.9 14 913-926 2-15 (26)
82 smart00370 LRR Leucine-rich re 84.7 0.72 1.6E-05 29.3 1.9 14 913-926 2-15 (26)
83 PF13516 LRR_6: Leucine Rich r 80.6 0.29 6.2E-06 30.5 -1.2 20 889-908 2-21 (24)
84 KOG3864 Uncharacterized conser 80.0 0.39 8.4E-06 47.5 -1.1 80 479-559 103-185 (221)
85 smart00369 LRR_TYP Leucine-ric 77.2 2.4 5.2E-05 26.8 2.3 16 236-251 2-17 (26)
86 smart00370 LRR Leucine-rich re 77.2 2.4 5.2E-05 26.8 2.3 16 236-251 2-17 (26)
87 smart00365 LRR_SD22 Leucine-ri 74.8 2.3 5E-05 27.1 1.7 15 912-926 1-15 (26)
88 KOG3864 Uncharacterized conser 74.1 0.64 1.4E-05 46.0 -1.4 31 136-166 105-135 (221)
89 KOG4242 Predicted myosin-I-bin 61.9 20 0.00042 40.6 6.6 36 528-563 414-453 (553)
90 smart00368 LRR_RI Leucine rich 61.6 5.9 0.00013 25.7 1.6 14 913-926 2-15 (28)
91 PF14715 FixP_N: N-terminal do 57.9 16 0.00034 27.8 3.5 21 2-22 17-37 (51)
92 KOG4242 Predicted myosin-I-bin 57.2 43 0.00094 38.0 8.2 20 551-570 215-234 (553)
93 TIGR00864 PCC polycystin catio 55.6 7.7 0.00017 53.4 2.7 33 788-820 14-46 (2740)
94 smart00364 LRR_BAC Leucine-ric 55.5 6.7 0.00015 24.9 1.0 18 527-544 2-19 (26)
95 PF01102 Glycophorin_A: Glycop 53.1 13 0.00029 34.0 3.0 8 1017-1024 70-77 (122)
96 PF05393 Hum_adeno_E3A: Human 38.6 29 0.00062 29.2 2.5 30 1016-1045 35-65 (94)
97 KOG3763 mRNA export factor TAP 38.2 17 0.00036 42.0 1.6 32 187-218 270-307 (585)
98 TIGR00782 ccoP cytochrome c ox 33.3 40 0.00087 36.6 3.5 22 2-23 23-44 (285)
99 PF13260 DUF4051: Protein of u 32.6 56 0.0012 23.9 2.8 16 32-47 28-43 (54)
100 PF15179 Myc_target_1: Myc tar 31.7 48 0.001 32.2 3.2 27 1005-1031 18-44 (197)
101 PF04478 Mid2: Mid2 like cell 30.1 11 0.00024 35.5 -1.2 14 1010-1023 52-65 (154)
102 PF15190 DUF4583: Domain of un 29.9 66 0.0014 29.0 3.5 17 3-19 63-79 (128)
103 PF13908 Shisa: Wnt and FGF in 27.4 59 0.0013 32.4 3.3 6 942-947 9-14 (179)
104 KOG3763 mRNA export factor TAP 26.3 38 0.00082 39.3 1.8 65 525-589 216-283 (585)
105 PRK10132 hypothetical protein; 25.4 42 0.00091 30.2 1.6 18 1009-1026 87-104 (108)
106 PRK10404 hypothetical protein; 24.5 45 0.00097 29.6 1.6 18 1009-1026 81-98 (101)
107 smart00367 LRR_CC Leucine-rich 23.4 56 0.0012 20.6 1.5 12 284-295 2-13 (26)
108 PF01102 Glycophorin_A: Glycop 23.0 74 0.0016 29.3 2.7 16 1010-1026 67-82 (122)
109 COG4575 ElaB Uncharacterized c 20.3 67 0.0015 28.3 1.8 19 1009-1027 84-102 (104)
110 PF06305 DUF1049: Protein of u 20.1 64 0.0014 26.0 1.6 12 1017-1028 29-40 (68)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-72 Score=719.59 Aligned_cols=584 Identities=35% Similarity=0.571 Sum_probs=372.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCcccceeEecCCCCcEEEEEcCCCccccccCCCCCccCCCCCCee
Q 001554 33 LEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHL 112 (1055)
Q Consensus 33 ~~~~~~aLl~~k~~~~~~~~~~~~~~l~~W~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L 112 (1055)
.++|++||++||+++.++. +.+.+|..+.+||.|+||+|+. .++|+.|||+++.++|.+++ .+..+++|++|
T Consensus 27 ~~~~~~~l~~~~~~~~~~~-----~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSINDPL-----KYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCCCCc-----ccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCCCEE
Confidence 5689999999999996433 3678998888999999999986 57999999999999988766 77788888888
Q ss_pred eCCCCCCCCCCCCccCC-CCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCce
Q 001554 113 NLADNSLYSSPFPSGFD-RLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEE 191 (1055)
Q Consensus 113 ~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~ 191 (1055)
+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|++++
T Consensus 99 ~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~-------------------------- 149 (968)
T PLN00113 99 NLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN-------------------------- 149 (968)
T ss_pred ECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcC--------------------------
Confidence 8888887765 665544 777777777777777766663 3344444444444
Q ss_pred eeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCc
Q 001554 192 LYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCG 271 (1055)
Q Consensus 192 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~ 271 (1055)
|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 150 ------------------------------n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 150 ------------------------------NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred ------------------------------CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 34444455555555666666666665555555555556666666666655
Q ss_pred CCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCccc
Q 001554 272 LYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSS 351 (1055)
Q Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 351 (1055)
+.+.+|..++++++|++|+++ +|.+.+.+|..++++++|++|++++|.+.+.+|..
T Consensus 200 l~~~~p~~l~~l~~L~~L~L~------------------------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 200 LVGQIPRELGQMKSLKWIYLG------------------------YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred CcCcCChHHcCcCCccEEECc------------------------CCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 555555555555555555554 33444455555555555555555555555555555
Q ss_pred ccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccccCCCcc
Q 001554 352 FGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIE 431 (1055)
Q Consensus 352 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 431 (1055)
++++++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.+|..+..+++
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l------------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-- 309 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSI------------------------FSLQKLISLDLSDNSLSGEIPELVIQLQN-- 309 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhH------------------------hhccCcCEEECcCCeeccCCChhHcCCCC--
Confidence 5555555555555554443332221 23334444444444433333333222222
Q ss_pred EEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCC
Q 001554 432 SLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSE 511 (1055)
Q Consensus 432 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~ 511 (1055)
|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 310 -----------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------- 347 (968)
T PLN00113 310 -----------------------LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE------------------- 347 (968)
T ss_pred -----------------------CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc-------------------
Confidence 22222222222222222233333333333333322211
Q ss_pred CcceeecCCCCCCcCCccceeecccCcCcccchhhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEeccCcccccc
Q 001554 512 NNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAF 591 (1055)
Q Consensus 512 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ 591 (1055)
+|..+..+++|+.|++++|+++
T Consensus 348 ------------------------------~p~~l~~~~~L~~L~Ls~n~l~---------------------------- 369 (968)
T PLN00113 348 ------------------------------IPKNLGKHNNLTVLDLSTNNLT---------------------------- 369 (968)
T ss_pred ------------------------------CChHHhCCCCCcEEECCCCeeE----------------------------
Confidence 1122223333333333333322
Q ss_pred CCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCC
Q 001554 592 EKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAF 671 (1055)
Q Consensus 592 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~ 671 (1055)
+.+|..++.+.
T Consensus 370 ---------------------------------------------------------------------~~~p~~~~~~~ 380 (968)
T PLN00113 370 ---------------------------------------------------------------------GEIPEGLCSSG 380 (968)
T ss_pred ---------------------------------------------------------------------eeCChhHhCcC
Confidence 22333344444
Q ss_pred CCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECC
Q 001554 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG 751 (1055)
Q Consensus 672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 751 (1055)
+|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..|.+++.|+.|++++|++++.+|..+..+++|+.|+++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 55666666666665555555555555555555555555555555555555555555555555555444444455555555
Q ss_pred CCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhh
Q 001554 752 KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQ 831 (1055)
Q Consensus 752 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~ 831 (1055)
+|+ +.+.+|... ..++|+.||+++|++++.+|..+
T Consensus 461 ~n~------------------------~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~------------------ 495 (968)
T PLN00113 461 RNK------------------------FFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL------------------ 495 (968)
T ss_pred Cce------------------------eeeecCccc---ccccceEEECcCCccCCccChhh------------------
Confidence 554 444444321 23567778888888877777422
Q ss_pred hhhhhhhhccccccccceEEeecCchhHHHhhcccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccC
Q 001554 832 ILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGN 911 (1055)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~ 911 (1055)
..++.|+.|||++|+++|.+|+.++++++|+.|+|++|+++|.+|..|++
T Consensus 496 ------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 496 ------------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred ------------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 13567889999999999999999999999999999999999999999999
Q ss_pred cCCCCeEeCCCCcCcccCcccccCCCCCCeEecCCCcCcccCCCCCCcccccccccccCCCCCCCC
Q 001554 912 LKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFP 977 (1055)
Q Consensus 912 L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~lcg~~ 977 (1055)
+++|+.|||++|+++|.+|..++++++|+.||+++|+++|.||..++|.+|...+|.||+++||.+
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-56 Score=575.14 Aligned_cols=273 Identities=37% Similarity=0.580 Sum_probs=236.2
Q ss_pred EEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCc
Q 001554 651 FFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNH 730 (1055)
Q Consensus 651 ~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 730 (1055)
.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++++|+
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 44444444555556667777888999999999988889888888999999999999999899989888999999999999
Q ss_pred ccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCC
Q 001554 731 LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLP 810 (1055)
Q Consensus 731 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p 810 (1055)
+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.++.. +..+++|+.|++++|++.+.+|
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR--KWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh--hccCCCCcEEECcCceeeeecC
Confidence 99999999999999999999999999999999999999999999999999887643 4578999999999999999888
Q ss_pred hHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEEEccCCcccccCcccccCCCC
Q 001554 811 ARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDA 890 (1055)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~ 890 (1055)
..+ ..+.|+.||+++|+++|.+|..++++++
T Consensus 470 ~~~-------------------------------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 470 DSF-------------------------------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred ccc-------------------------------------------------ccccceEEECcCCccCCccChhhhhhhc
Confidence 421 1356889999999999999999999999
Q ss_pred CCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEecCCCcCcccCCCCC-Cccccccccccc
Q 001554 891 LLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGP-QFATFTAASFEG 969 (1055)
Q Consensus 891 L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~L~g~iP~~~-~~~~~~~~s~~g 969 (1055)
|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|..++.+++|+.||+++|+++|.+|... .+.........+
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999763 233344455567
Q ss_pred CCCCC
Q 001554 970 NAGLC 974 (1055)
Q Consensus 970 n~~lc 974 (1055)
|+..+
T Consensus 581 N~l~~ 585 (968)
T PLN00113 581 NHLHG 585 (968)
T ss_pred Cccee
Confidence 76554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-36 Score=323.00 Aligned_cols=382 Identities=23% Similarity=0.329 Sum_probs=238.9
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccC
Q 001554 334 LEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRN 413 (1055)
Q Consensus 334 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~ 413 (1055)
-+.|++++|++....+..|.++++|+.+++.+|.++ .+|.+.. ....|+.|+|.+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~------------------------~sghl~~L~L~~ 134 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH------------------------ESGHLEKLDLRH 134 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc------------------------cccceeEEeeec
Confidence 356888888888777777888888888888888776 4554432 223455566666
Q ss_pred cccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCcc
Q 001554 414 NSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFI 493 (1055)
Q Consensus 414 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i 493 (1055)
|.++..-.+.+..++.|+.|||+.|.++ .+|.-.+..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++. +
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-L 212 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-L 212 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-c
Confidence 6555555555666666666666666665 3333333444567777777777777777778888888888888888874 7
Q ss_pred chhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCcccc-hhhhCCCCCCEEECcCCCCCCcccccccc
Q 001554 494 TLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWN 572 (1055)
Q Consensus 494 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 572 (1055)
|...|+++++|+.|+|..|.|. .+.+..+..+++|+.|.+..|++..+. ..|..+.++++|+|+.|+++..-..|++.
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred CHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 7788888888888888888876 334445677888888888888888775 46788889999999999988766667665
Q ss_pred cCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecCCCccccCCCcchhccccceeEE
Q 001554 573 VGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFF 652 (1055)
Q Consensus 573 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l 652 (1055)
.. +|+.|++|+|.|..+...
T Consensus 292 Lt--~L~~L~lS~NaI~rih~d---------------------------------------------------------- 311 (873)
T KOG4194|consen 292 LT--SLEQLDLSYNAIQRIHID---------------------------------------------------------- 311 (873)
T ss_pred cc--hhhhhccchhhhheeecc----------------------------------------------------------
Confidence 44 366666666666554332
Q ss_pred EccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCccc
Q 001554 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLA 732 (1055)
Q Consensus 653 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 732 (1055)
++.-+++|++|+|++|+++..-++.|..+..|++|+|++|.++..-...|..+++|++|||++|.++
T Consensus 312 -------------~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 312 -------------SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred -------------hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 2222334444444444444444444444444555555555444444444444455555555555544
Q ss_pred ccCcc---cccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCC
Q 001554 733 GSLPK---SLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNL 809 (1055)
Q Consensus 733 ~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~ 809 (1055)
+.+.+ .|.++++|+.|++.+|++..+...+|.+++.|+.|+|.+|.|...-+ ..+..+ .|+.|.+..-.|-|+|
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~--nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP--NAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc--cccccc-hhhhhhhcccceEEec
Confidence 43332 24445555555555555554444455555555555555555443222 123333 5566666666778899
Q ss_pred ChHHHhhhhh
Q 001554 810 PARWFQSWRG 819 (1055)
Q Consensus 810 p~~~~~~~~~ 819 (1055)
...|+..|-.
T Consensus 456 ql~Wl~qWl~ 465 (873)
T KOG4194|consen 456 QLKWLAQWLY 465 (873)
T ss_pred cHHHHHHHHH
Confidence 9999998843
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-38 Score=325.51 Aligned_cols=487 Identities=26% Similarity=0.360 Sum_probs=283.5
Q ss_pred EEEEcCCCccccccCCCCCccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEe
Q 001554 84 IGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDL 163 (1055)
Q Consensus 84 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~L 163 (1055)
..++++++.+.- +.+ .+.++..|.+|++.+|.+.. +|++++.+..++.|+.++|+++ ++|++++.+.+|+.|+.
T Consensus 48 ~~lils~N~l~~-l~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 48 QKLILSHNDLEV-LRE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred hhhhhccCchhh-ccH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 445555555542 222 45556666666666666554 4566666666666666666655 56666666666666666
Q ss_pred cCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEEC
Q 001554 164 SASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNL 243 (1055)
Q Consensus 164 s~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L 243 (1055)
++|. +... ++.++.+..|..++..+|+++. .|++++.+.+|..|++
T Consensus 122 s~n~-------------------------------~~el--~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 122 SSNE-------------------------------LKEL--PDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDL 167 (565)
T ss_pred cccc-------------------------------eeec--CchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhc
Confidence 5553 3322 4566667777777777777765 6777888888888888
Q ss_pred CCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC
Q 001554 244 DGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGK 323 (1055)
Q Consensus 244 s~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 323 (1055)
.+|++....|..+. ++.|++|+...|-+ +.+|+.++.+.+|+.|++..|.+.. .|.|+++..|+++.++.|.++ .
T Consensus 168 ~~n~l~~l~~~~i~-m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~-~ 242 (565)
T KOG0472|consen 168 EGNKLKALPENHIA-MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIE-M 242 (565)
T ss_pred cccchhhCCHHHHH-HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHH-h
Confidence 88888865555554 88888888888877 6788888888888888888877654 347778888888888788777 4
Q ss_pred Cccccc-CCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccC
Q 001554 324 LPDSIN-NLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQ 402 (1055)
Q Consensus 324 ~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 402 (1055)
+|.... .+.++..||+++|++. +.|..+.-+++|++||+++|.+++. |... ++
T Consensus 243 lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~sL------------------------gn 296 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYSL------------------------GN 296 (565)
T ss_pred hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Cccc------------------------cc
Confidence 555544 7788888888888886 6777777788888888888887743 3333 33
Q ss_pred CCCccEEEccCcccccccccccccCC---CccEEEc--cCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCC
Q 001554 403 LISLQVLDLRNNSLQGIIPKSLYTKQ---SIESLLL--GQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIK 477 (1055)
Q Consensus 403 l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~L--~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 477 (1055)
+ .|+.|-+.+|.+.. +...+-++. -|++|.= ..-.++.. .. +.. ..-+. .. ..........
T Consensus 297 l-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~s--e~--~~e---~~~t~----~~-~~~~~~~~~i 362 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQS--EG--GTE---TAMTL----PS-ESFPDIYAII 362 (565)
T ss_pred c-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCC--cc--ccc---ccCCC----CC-Ccccchhhhh
Confidence 3 44444444444331 111111110 0111100 00000000 00 000 00000 00 0011223344
Q ss_pred CCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCcccchhhhCCCCCCE-EE
Q 001554 478 GLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFH-LD 556 (1055)
Q Consensus 478 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~l~~L~~-L~ 556 (1055)
+.+.|+++.-+++. +|.+.|..-.+ .-....+++.|++.++|..+..+..+.. ++
T Consensus 363 ~tkiL~~s~~qlt~-VPdEVfea~~~-----------------------~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 363 TTKILDVSDKQLTL-VPDEVFEAAKS-----------------------EIVTSVNFSKNQLCELPKRLVELKELVTDLV 418 (565)
T ss_pred hhhhhccccccccc-CCHHHHHHhhh-----------------------cceEEEecccchHhhhhhhhHHHHHHHHHHH
Confidence 56666666666663 56555543211 1134556666666677766655544432 33
Q ss_pred CcCCCCCCcccccccccCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecCCCcccc
Q 001554 557 LSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTT 636 (1055)
Q Consensus 557 Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~ 636 (1055)
+++|.+. -+|..+..
T Consensus 419 lsnn~is-fv~~~l~~---------------------------------------------------------------- 433 (565)
T KOG0472|consen 419 LSNNKIS-FVPLELSQ---------------------------------------------------------------- 433 (565)
T ss_pred hhcCccc-cchHHHHh----------------------------------------------------------------
Confidence 4443332 22222211
Q ss_pred CCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccC
Q 001554 637 NIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIG 716 (1055)
Q Consensus 637 ~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 716 (1055)
++++..|+|++|-+. .+|..++.+..|+.|++|.|+|. .+|.++.....++.+-.++|++....|+.+.
T Consensus 434 ---------l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 434 ---------LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ---------hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 111222222222111 34555566666777777777776 6777777766777777777777766666677
Q ss_pred CCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCc
Q 001554 717 NECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN 756 (1055)
Q Consensus 717 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 756 (1055)
++.+|.+|||.+|.+. .+|..+++|++|++|++++|.+.
T Consensus 503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 7777777777777777 66777777777777777777775
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=310.63 Aligned_cols=363 Identities=25% Similarity=0.298 Sum_probs=276.9
Q ss_pred CcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCCCCCCcEEEccC
Q 001554 214 LRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSS 293 (1055)
Q Consensus 214 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (1055)
-+.|++++|.+...-+..|.++++|+.+++..|.++ .+|...+...+|+.|+|.+|.|...-.+++..++.|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 345666666666655566666666666666666665 4555555555566677776666666666666667777777777
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCC-C
Q 001554 294 NSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGS-L 372 (1055)
Q Consensus 294 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~ 372 (1055)
|.+.....+.|+.-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++... .
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 766666667777777777777777777766666677777777777777777766666677777777777777776533 3
Q ss_pred CcccccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccc
Q 001554 373 PSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASS 452 (1055)
Q Consensus 373 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 452 (1055)
-.+.+..+++.|.+..|.+. .+.+..|..+.++++|+|+.|+++..-..++..+++|+.|++++|.|...-++. +..+
T Consensus 239 ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-Wsft 316 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFT 316 (873)
T ss_pred hhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhc
Confidence 34555557777777777766 444555677899999999999999888889999999999999999987544433 3778
Q ss_pred cCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCC--CCCcCCccc
Q 001554 453 LSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGS--NSNMFPKIG 530 (1055)
Q Consensus 453 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~~~L~ 530 (1055)
++|++|+|++|+++..-+.+|..+..|++|.|++|.++. +....|..+.+|++|||++|.+...+... .+..+++|+
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 899999999999999999999999999999999999984 77889999999999999999998765543 356799999
Q ss_pred eeecccCcCcccc-hhhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEec
Q 001554 531 TLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNL 583 (1055)
Q Consensus 531 ~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~L 583 (1055)
.|++.+|+++.|| ..+.++..|++|||.+|.|...-|+.|... .|++|.+
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m---~Lk~Lv~ 446 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM---ELKELVM 446 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc---hhhhhhh
Confidence 9999999999999 589999999999999999987777776544 3555544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-37 Score=317.86 Aligned_cols=479 Identities=26% Similarity=0.343 Sum_probs=278.4
Q ss_pred CCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEE
Q 001554 187 TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLH 266 (1055)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ 266 (1055)
.-|+.|.++.|.+... .+.+.++..|.+|++.+|++.. .|++++.+..++.|+.++|+++ .+|+.++.+.+|+.|+
T Consensus 45 v~l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhhc--cHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 4566666776666533 3345566666666666666654 5556666666666666666665 4566666666666666
Q ss_pred ccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCC
Q 001554 267 LSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFG 346 (1055)
Q Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 346 (1055)
.++|.+ ..+|++++.+..|+.++.. +|+++ ..|+.+.++.+|..+++.+|++..
T Consensus 121 ~s~n~~-~el~~~i~~~~~l~dl~~~------------------------~N~i~-slp~~~~~~~~l~~l~~~~n~l~~ 174 (565)
T KOG0472|consen 121 CSSNEL-KELPDSIGRLLDLEDLDAT------------------------NNQIS-SLPEDMVNLSKLSKLDLEGNKLKA 174 (565)
T ss_pred ccccce-eecCchHHHHhhhhhhhcc------------------------ccccc-cCchHHHHHHHHHHhhccccchhh
Confidence 666665 3445555555555555555 33444 355666666666667777766663
Q ss_pred CCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCccccccccccccc
Q 001554 347 SIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYT 426 (1055)
Q Consensus 347 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 426 (1055)
..| ..-+++.|++||...|-+.. +|.+ .+.+.+|+.|++..|++. .+| .|..
T Consensus 175 l~~-~~i~m~~L~~ld~~~N~L~t------------------------lP~~-lg~l~~L~~LyL~~Nki~-~lP-ef~g 226 (565)
T KOG0472|consen 175 LPE-NHIAMKRLKHLDCNSNLLET------------------------LPPE-LGGLESLELLYLRRNKIR-FLP-EFPG 226 (565)
T ss_pred CCH-HHHHHHHHHhcccchhhhhc------------------------CChh-hcchhhhHHHHhhhcccc-cCC-CCCc
Confidence 333 33336666666666666553 3333 244555566666666655 334 5556
Q ss_pred CCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCe
Q 001554 427 KQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGT 506 (1055)
Q Consensus 427 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 506 (1055)
|..|++++++.|++. .+|......+.++..||+.+|++. ..|..++-+.+|++||+++|.+++ +| ..++++ .|+.
T Consensus 227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp-~sLgnl-hL~~ 301 (565)
T KOG0472|consen 227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LP-YSLGNL-HLKF 301 (565)
T ss_pred cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CC-cccccc-eeee
Confidence 666666666666554 444444345556666666666665 445666666666666666666664 22 235555 6666
Q ss_pred EECCCCcceeecC----CCCCCcCCccce----eecccC---cCc--ccc----hhhhCCCCCCEEECcCCCCCCccccc
Q 001554 507 LELSENNFSFNVS----GSNSNMFPKIGT----LKLSSC---KIT--EFP----NFLRNQTNLFHLDLSNNRIKGEIPNW 569 (1055)
Q Consensus 507 L~Ls~n~l~~~~~----~~~~~~~~~L~~----L~L~~n---~l~--~ip----~~l~~l~~L~~L~Ls~N~l~~~~p~~ 569 (1055)
|.+.+|.+..... ......+..|+. =.++.- .-+ ..| .......+.+.|+++.-+++ .+|..
T Consensus 302 L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdE 380 (565)
T KOG0472|consen 302 LALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDE 380 (565)
T ss_pred hhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHH
Confidence 6666665532110 000000000110 000000 000 101 12345667888888888887 66766
Q ss_pred ccccCC-CCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecCCCccccCCCcchhccccc
Q 001554 570 TWNVGD-GKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINY 648 (1055)
Q Consensus 570 ~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~ 648 (1055)
.|.... .-....+++.|++..++.. +......
T Consensus 381 Vfea~~~~~Vt~VnfskNqL~elPk~-----------------------------------------------L~~lkel 413 (565)
T KOG0472|consen 381 VFEAAKSEIVTSVNFSKNQLCELPKR-----------------------------------------------LVELKEL 413 (565)
T ss_pred HHHHhhhcceEEEecccchHhhhhhh-----------------------------------------------hHHHHHH
Confidence 655432 1244555555555443321 1111111
Q ss_pred eeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCC
Q 001554 649 AVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQ 728 (1055)
Q Consensus 649 l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 728 (1055)
.+.+.+ .|+..+.+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|+|. .+|.++..+..++.+-.++
T Consensus 414 vT~l~l-snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 414 VTDLVL-SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHh-hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 112222 33334467777888888888888888777 77888888888888888888776 5677776667777777777
Q ss_pred CcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCc
Q 001554 729 NHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780 (1055)
Q Consensus 729 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 780 (1055)
|++....|+.+.++.+|..|||.+|.+. .+|..++++++|+.|++.+|+|.
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8877666666777788888888888776 56667777777777777776665
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-34 Score=328.67 Aligned_cols=480 Identities=29% Similarity=0.384 Sum_probs=290.4
Q ss_pred EccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCC
Q 001554 266 HLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFF 345 (1055)
Q Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 345 (1055)
|.+.+++ ..+|..+..-..++.|++..|-...-+.+...+.-+|+.|++++|++. ..|..+..+..|+.|+++.|.+.
T Consensus 4 d~s~~~l-~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 4 DASDEQL-ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred ccccccC-cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence 3444444 244444444444556666655554444333334444666666677665 56677777788888888888776
Q ss_pred CCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccc
Q 001554 346 GSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLY 425 (1055)
Q Consensus 346 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 425 (1055)
..|.+..++.+|+++.|.+|.+. ..| .. +..+.+|+.|+++.|.+. .+|..+.
T Consensus 82 -~vp~s~~~~~~l~~lnL~~n~l~-~lP-----------------------~~-~~~lknl~~LdlS~N~f~-~~Pl~i~ 134 (1081)
T KOG0618|consen 82 -SVPSSCSNMRNLQYLNLKNNRLQ-SLP-----------------------AS-ISELKNLQYLDLSFNHFG-PIPLVIE 134 (1081)
T ss_pred -hCchhhhhhhcchhheeccchhh-cCc-----------------------hh-HHhhhcccccccchhccC-CCchhHH
Confidence 56677777888888888777765 222 22 356677777788877776 6677777
Q ss_pred cCCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCC
Q 001554 426 TKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLG 505 (1055)
Q Consensus 426 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 505 (1055)
.++.++.+..++|......+. ..++.+++..|.+.+.++..+..++. .|+|++|.+. . ..+..+.+|+
T Consensus 135 ~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~ 202 (1081)
T KOG0618|consen 135 VLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLE 202 (1081)
T ss_pred hhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchh
Confidence 777777777777732211111 12666677777766666666655555 5666666654 1 1223333333
Q ss_pred eEECCCCcceeecCCCCCCcCCccceeecccCcCcccchhhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEeccC
Q 001554 506 TLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSH 585 (1055)
Q Consensus 506 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~ 585 (1055)
.|....|++. .+. -.-++|+.|+.++|.+...
T Consensus 203 ~l~c~rn~ls-------------------------~l~---~~g~~l~~L~a~~n~l~~~-------------------- 234 (1081)
T KOG0618|consen 203 VLHCERNQLS-------------------------ELE---ISGPSLTALYADHNPLTTL-------------------- 234 (1081)
T ss_pred hhhhhhcccc-------------------------eEE---ecCcchheeeeccCcceee--------------------
Confidence 3333333222 111 1123444444444444311
Q ss_pred ccccccCCCCCcccccceeEEEccCCCCCCCCCCC-CCccceeecCCCccccCCCcchhccccceeEEEccCCcCcCCcc
Q 001554 586 NMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP-PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIP 664 (1055)
Q Consensus 586 N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p 664 (1055)
.+.. +.+++++|+++|+ +++ +|
T Consensus 235 -------------------------------~~~p~p~nl~~~dis~n~-------------------------l~~-lp 257 (1081)
T KOG0618|consen 235 -------------------------------DVHPVPLNLQYLDISHNN-------------------------LSN-LP 257 (1081)
T ss_pred -------------------------------ccccccccceeeecchhh-------------------------hhc-ch
Confidence 1111 2233333333333 332 44
Q ss_pred ccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCccc-ccCCC
Q 001554 665 LSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKS-LSKCT 743 (1055)
Q Consensus 665 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~ 743 (1055)
.+++.+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+.. +|.....+++|++|+|..|+|. .+|+. +.-..
T Consensus 258 ~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~ 334 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLN 334 (1081)
T ss_pred HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhh
Confidence 66777777777777777775 667766677777777777777763 4555666777777777777777 44443 33222
Q ss_pred -CCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhcc
Q 001554 744 -SLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKK 822 (1055)
Q Consensus 744 -~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~ 822 (1055)
+|+.|+.+.|++....-..=...+.|+.|++.+|.+++..- ..+.++..|++|+|++|++. .+|...+.+
T Consensus 335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyNrL~-~fpas~~~k------ 405 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYNRLN-SFPASKLRK------ 405 (1081)
T ss_pred HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch--hhhccccceeeeeecccccc-cCCHHHHhc------
Confidence 36677777777763332222235677777778887766542 34567777888888888773 456544332
Q ss_pred ccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEEEccCCcccccCcccccCCCCCCEEECCCCccc
Q 001554 823 RTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFK 902 (1055)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~ 902 (1055)
+..|+.|+||+|+|+ .+|+++.++..|++|..-+|++.
T Consensus 406 -----------------------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 406 -----------------------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred -----------------------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 344567788888887 67788888888888888888887
Q ss_pred cccCccccCcCCCCeEeCCCCcCccc-CcccccCCCCCCeEecCCCc
Q 001554 903 GQIPATLGNLKELGSLDLSHNQLSGK-IPEKLATLNFLSVLKLSQNL 948 (1055)
Q Consensus 903 g~iP~~~~~L~~L~~LdLs~N~lsg~-ip~~l~~l~~L~~l~ls~N~ 948 (1055)
..| ++.++++|+.+|+|.|+|+-. +|...-. +.|++|||++|.
T Consensus 444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred -ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 566 778888888888888888743 3433332 678888888875
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3e-34 Score=325.10 Aligned_cols=426 Identities=28% Similarity=0.346 Sum_probs=241.9
Q ss_pred cccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCC
Q 001554 229 HSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSS 308 (1055)
Q Consensus 229 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~ 308 (1055)
|.+.+++.+|++|.|.+|.+. ..|..+..+++|++|+++.|.+ +.+|..+..+..++.++.++|. .... ++...
T Consensus 84 p~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~-~~~~---lg~~~ 157 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNE-KIQR---LGQTS 157 (1081)
T ss_pred chhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcch-hhhh---hcccc
Confidence 344555555555555555544 4555566666666666666666 4556666666666666666551 1111 11111
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEccc
Q 001554 309 QLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAH 388 (1055)
Q Consensus 309 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~ 388 (1055)
++.+++..|.+.+.++..+..++. .|+|++|.+. -..+.++.+|+.+....|++.
T Consensus 158 -ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls------------------- 212 (1081)
T KOG0618|consen 158 -IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS------------------- 212 (1081)
T ss_pred -chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-------------------
Confidence 444444455555555555544444 4555555553 122344444444444444433
Q ss_pred ccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCC
Q 001554 389 NSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGL 468 (1055)
Q Consensus 389 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 468 (1055)
.. -...++|+.|+.++|.++...+. ....+|+.+++++|++++.
T Consensus 213 -----------------------------~l----~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~l 256 (1081)
T KOG0618|consen 213 -----------------------------EL----EISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNL 256 (1081)
T ss_pred -----------------------------eE----EecCcchheeeeccCcceeeccc---cccccceeeecchhhhhcc
Confidence 11 01123444444444444422111 2334677777777777744
Q ss_pred CCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCcccchhhhC
Q 001554 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRN 548 (1055)
Q Consensus 469 ~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~ 548 (1055)
|++++.+.+|+.++..+|+++. ++...+ ...+|+.|.+..|++..+|..+..
T Consensus 257 -p~wi~~~~nle~l~~n~N~l~~-lp~ri~--------------------------~~~~L~~l~~~~nel~yip~~le~ 308 (1081)
T KOG0618|consen 257 -PEWIGACANLEALNANHNRLVA-LPLRIS--------------------------RITSLVSLSAAYNELEYIPPFLEG 308 (1081)
T ss_pred -hHHHHhcccceEecccchhHHh-hHHHHh--------------------------hhhhHHHHHhhhhhhhhCCCcccc
Confidence 4777777778888777777753 443322 234667777777777788887888
Q ss_pred CCCCCEEECcCCCCCCcccccccccCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceee
Q 001554 549 QTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLD 628 (1055)
Q Consensus 549 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ld 628 (1055)
.++|+.|||..|+|. ..|..+......++..++.+.|++.......
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~--------------------------------- 354 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE--------------------------------- 354 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccccccc---------------------------------
Confidence 888888888888886 4554443333333445555555444332111
Q ss_pred cCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCc
Q 001554 629 YSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFL 708 (1055)
Q Consensus 629 ls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 708 (1055)
......++.|.+.+|.++...-+.+.+...|+.|+|++|++......++.++..|++|+||+|+++
T Consensus 355 --------------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 355 --------------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred --------------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 011334455666666666655555666677777777777777333345667777777777777777
Q ss_pred ccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCcc-ccCccccCCCCCcEEEccCCcCccccCCCc
Q 001554 709 GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNG-SFPFWLETLPQLRVLVLQSNNYDGSIKDTQ 787 (1055)
Q Consensus 709 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 787 (1055)
.+|..+.++..|++|...+|++. ..| .+..++.|+.+|+|.|+++. .+|..... ++|++|||++|.-. .-+..
T Consensus 421 -~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l--~~d~~ 494 (1081)
T KOG0618|consen 421 -TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL--VFDHK 494 (1081)
T ss_pred -hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc--ccchh
Confidence 46677777777777777777777 666 67777777777777777763 33333222 67777777777631 11122
Q ss_pred ccccCCCCcEEeccCC
Q 001554 788 TANAFALLQIIDISSN 803 (1055)
Q Consensus 788 ~~~~l~~L~~Ldls~N 803 (1055)
.+..+..+...|++-|
T Consensus 495 ~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 495 TLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhHHhhhhhheecccC
Confidence 3444555555555555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=6.1e-32 Score=291.58 Aligned_cols=368 Identities=23% Similarity=0.349 Sum_probs=294.8
Q ss_pred cCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHHHh
Q 001554 104 FDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLV 183 (1055)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l 183 (1055)
+-++..|-.|+++|.+.|..+|..+..+++++-|.|....+. .+|+.++.|.+|++|.+++|++. .+...+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~--------~vhGEL 74 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI--------SVHGEL 74 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH--------hhhhhh
Confidence 446677888999999987779999999999999999999987 89999999999999999998763 334468
Q ss_pred cCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCc
Q 001554 184 KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQ 263 (1055)
Q Consensus 184 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~ 263 (1055)
..++.|+.+.+..|++....+|..+-.+..|+.|||++|++.. .|..+..-+++-+|+||+|+|..+....|.+++.|-
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 8899999999999999988889999999999999999999876 888999999999999999999976667788999999
Q ss_pred EEEccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCC-CCCcccccCCCCCCEEEccCC
Q 001554 264 YLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFS-GKLPDSINNLALLEDLELSDC 342 (1055)
Q Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n 342 (1055)
+|||++|++ ..+|+.+..+.+|++|+|++|++....+..++.+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|
T Consensus 154 fLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 999999999 578888999999999999999998888889999999999999987643 468999999999999999999
Q ss_pred cCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCccccccccc
Q 001554 343 NFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPK 422 (1055)
Q Consensus 343 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~ 422 (1055)
.+. .+|..+.++++|+.|+|++|+++..--.. +...+|+.|+++.|+++ .+|.
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~-------------------------~~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKITELNMTE-------------------------GEWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCceeeeeccH-------------------------HHHhhhhhhccccchhc-cchH
Confidence 997 88999999999999999999987422211 23345566666666665 5566
Q ss_pred ccccCCCccEEEccCccccC-CcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcC
Q 001554 423 SLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDL 501 (1055)
Q Consensus 423 ~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l 501 (1055)
.+..++.|+.|++.+|+++- -+|..+ +.+.+|+++..++|.+. .+|+.++.|.+|+.|.|+.|++.. +| +.+.-+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGI-GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LP-eaIHlL 361 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGI-GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LP-EAIHLL 361 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccch-hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-ch-hhhhhc
Confidence 66666666666666665542 233333 55556666666666654 566666666666666666666652 22 455666
Q ss_pred CCCCeEECCCCc
Q 001554 502 RQLGTLELSENN 513 (1055)
Q Consensus 502 ~~L~~L~Ls~n~ 513 (1055)
+.|+.||+..|.
T Consensus 362 ~~l~vLDlreNp 373 (1255)
T KOG0444|consen 362 PDLKVLDLRENP 373 (1255)
T ss_pred CCcceeeccCCc
Confidence 666667766663
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.4e-31 Score=285.85 Aligned_cols=361 Identities=25% Similarity=0.406 Sum_probs=205.3
Q ss_pred CCcEEEccCCcCC-CCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcc
Q 001554 309 QLKVIELSETRFS-GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFA 387 (1055)
Q Consensus 309 ~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~ 387 (1055)
-.+-+++++|.++ +..|.....++.++.|.|...++. .+|..++.+.+|++|.+++|++....-.....+.|+.+.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 3445555677777 466777777778888877777775 67777777888888888777776433333333355555555
Q ss_pred cccCcc-ccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCcccc
Q 001554 388 HNSFTG-TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQ 466 (1055)
Q Consensus 388 ~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 466 (1055)
.|++.. .+|... -.+..|+.|||++|++. +.|..+..-.++-.|+|++|+|. .||...+.++..|-.||||+|++.
T Consensus 87 ~N~LKnsGiP~di-F~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDI-FRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred ccccccCCCCchh-cccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 554432 344443 34666666666666666 55666666666666666666665 445444456666666666666665
Q ss_pred CCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCc--ccch
Q 001554 467 GLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT--EFPN 544 (1055)
Q Consensus 467 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~ 544 (1055)
.+|..+..+..|++|+|++|.+.- .....+..+++ |+.|.+++.+-+ .+|.
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmts-------------------------L~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTS-------------------------LSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchh-------------------------hhhhhcccccchhhcCCC
Confidence 344456666666666666665542 22222333334 444444444322 5666
Q ss_pred hhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCcc
Q 001554 545 FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASI 624 (1055)
Q Consensus 545 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l 624 (1055)
.+..+.+|..+|+|.|.+. .+|..++.... |+.|+||+|+|+.+...
T Consensus 217 sld~l~NL~dvDlS~N~Lp-~vPecly~l~~--LrrLNLS~N~iteL~~~------------------------------ 263 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLP-IVPECLYKLRN--LRRLNLSGNKITELNMT------------------------------ 263 (1255)
T ss_pred chhhhhhhhhccccccCCC-cchHHHhhhhh--hheeccCcCceeeeecc------------------------------
Confidence 6666666667777766665 55555544332 55555555554433211
Q ss_pred ceeecCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccC
Q 001554 625 IFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRN 704 (1055)
Q Consensus 625 ~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 704 (1055)
.+.-.+|++|++|.|+++ .+|.+++.++.|+.|.+.+
T Consensus 264 ------------------------------------------~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 264 ------------------------------------------EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred ------------------------------------------HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence 111223455555555555 4555555555555555555
Q ss_pred CcCc-ccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCc
Q 001554 705 NEFL-GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778 (1055)
Q Consensus 705 N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 778 (1055)
|+++ .-+|..++++.+|+.+..++|++. ..|+.+..|..|+.|.|++|++. .+|+++.-++.|++||++.|.
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 5543 124555555555555555555555 55555555666666666666554 455555556666666666554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=5.4e-25 Score=227.62 Aligned_cols=118 Identities=28% Similarity=0.336 Sum_probs=80.5
Q ss_pred ccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccC-ccccCCcchhhcccccCcCeeeccCccccCCCCcc
Q 001554 394 TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQ-NKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPES 472 (1055)
Q Consensus 394 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 472 (1055)
.+|...|..+++|+.|||++|.|+.+-|.+|..++++..|.+.+ |+|+ .+|...+..+..++.|.+.-|++.......
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 66666678888888888888888888888888888877776666 6665 455555566666777777666666666666
Q ss_pred ccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCc
Q 001554 473 IFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513 (1055)
Q Consensus 473 l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~ 513 (1055)
|..++++..|.+.+|.+. .+....|..+.+++.+.+..|.
T Consensus 160 l~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence 666666666666666655 2444455555555555555554
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.8e-24 Score=223.84 Aligned_cols=416 Identities=21% Similarity=0.255 Sum_probs=221.6
Q ss_pred CcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCC-CcceeecCCCCCCcCCcccee
Q 001554 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSE-NNFSFNVSGSNSNMFPKIGTL 532 (1055)
Q Consensus 454 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~L~~L 532 (1055)
.-.+++|..|+|+...|.+|..+++|+.|||++|.|+ .|.++.|+++.+|.+|-+.+ |+|+.. +...+..+..++.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHHHH
Confidence 3455666666666666666666666666666666666 35556666666665555554 555532 22334445555566
Q ss_pred ecccCcCcccc-hhhhCCCCCCEEECcCCCCCCcccc-cccccCCCCceEEeccCccccccCCCCCcccccceeEEEccC
Q 001554 533 KLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPN-WTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHS 610 (1055)
Q Consensus 533 ~L~~n~l~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~ 610 (1055)
.+.-|++..++ +.++.++++..|.+.+|.+. .++. .+.... .++.+.+..
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~---------------------------~i~tlhlA~ 197 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLA---------------------------AIKTLHLAQ 197 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchh---------------------------ccchHhhhc
Confidence 66666666554 56777777777777777765 2222 221111 222223322
Q ss_pred CCCCCCCCCCCCccceeecCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCcc
Q 001554 611 NMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSC 690 (1055)
Q Consensus 611 n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 690 (1055)
|.+...- ++..+ .. ++ -..|..++......-..+.++++...-+..
T Consensus 198 np~icdC-----nL~wl---------------a~--------~~------a~~~ietsgarc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 198 NPFICDC-----NLPWL---------------AD--------DL------AMNPIETSGARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred Ccccccc-----ccchh---------------hh--------HH------hhchhhcccceecchHHHHHHHhcccchhh
Confidence 2221110 00000 00 00 001111222222222233333333222222
Q ss_pred ccCC-CcccEEeccCCcCcccCC-cccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCC
Q 001554 691 LVSS-NILKVLKLRNNEFLGTVP-QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQ 768 (1055)
Q Consensus 691 l~~l-~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 768 (1055)
|... .++..=-.+.+...+.-| ..|..+++|++|+|++|+|+++-+.+|.+...+++|.|..|+|...-...|.++..
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~ 323 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG 323 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence 2111 111111122222333333 34667777777777777777777777777777777777777776666666777777
Q ss_pred CcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhcccccc--chhhhhhhhhhhhccccccc
Q 001554 769 LRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKE--SQESQILKFVYLELSNLYYQ 846 (1055)
Q Consensus 769 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 846 (1055)
|++|+|.+|+|+-..| ..+..+.+|..|.+-.|+|.|+|-..|+..|-.-+..... -+..+.++... +.+..+.
T Consensus 324 L~tL~L~~N~it~~~~--~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~--~~dv~~~ 399 (498)
T KOG4237|consen 324 LKTLSLYDNQITTVAP--GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIP--ISDVAFG 399 (498)
T ss_pred ceeeeecCCeeEEEec--ccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhcccc--chhcccc
Confidence 7777777777765543 3456667788888899999999999999999554331111 11111111000 0000000
Q ss_pred c-------ceEEeecCchhHHHhhcccc-cEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeE
Q 001554 847 D-------SVTLMNKGLSMELAKILTIF-TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSL 918 (1055)
Q Consensus 847 ~-------~~~~~~~~~~~~~~~~l~~l-~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~L 918 (1055)
+ .......+.-. ...+-+ +..--|++.+. .+|+.+. .....|.|.+|+++ .||.+ .++.| .+
T Consensus 400 ~~~c~~~ee~~~~~s~~cP---~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~ 469 (498)
T KOG4237|consen 400 DFRCGGPEELGCLTSSPCP---PPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LL 469 (498)
T ss_pred ccccCCccccCCCCCCCCC---CCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hc
Confidence 0 00000000000 001111 22334555554 4444332 24457888999998 78887 77888 89
Q ss_pred eCCCCcCcccCcccccCCCCCCeEecCCC
Q 001554 919 DLSHNQLSGKIPEKLATLNFLSVLKLSQN 947 (1055)
Q Consensus 919 dLs~N~lsg~ip~~l~~l~~L~~l~ls~N 947 (1055)
|||+|+++-.--..|+++++|.+|-+|||
T Consensus 470 dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 470 DLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccccCceehhhcccccchhhhheeEEecC
Confidence 99999998877788999999999999987
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.8e-21 Score=246.15 Aligned_cols=362 Identities=23% Similarity=0.240 Sum_probs=234.1
Q ss_pred CCCcEEEEEcCCCccccccCCCCCccCCCCCCeeeCCCCCCCC-----CCCCccCCCCC-CCCEEeCCCCCCCCCCChhc
Q 001554 79 RTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYS-----SPFPSGFDRLF-SLTHLNLSYSGFSGHIPLEI 152 (1055)
Q Consensus 79 ~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~lp~~l~~l~-~L~~L~Ls~n~~~~~~p~~l 152 (1055)
.+.+|+++.+.-..+...-....++..+++|++|.+..+.... ..+|+.+..++ +||.|++.++.+. .+|..+
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f 608 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF 608 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence 3467777766544433211112267889999999997654321 13677777764 6999999999886 888777
Q ss_pred ccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccc
Q 001554 153 SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSL 232 (1055)
Q Consensus 153 ~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l 232 (1055)
...+|++|+++++.+.. ++..+..+++|+.|+++++..... .+.++.+++|++|+|++|.....+|..+
T Consensus 609 -~~~~L~~L~L~~s~l~~--------L~~~~~~l~~Lk~L~Ls~~~~l~~--ip~ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 609 -RPENLVKLQMQGSKLEK--------LWDGVHSLTGLRNIDLRGSKNLKE--IPDLSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred -CccCCcEEECcCccccc--------cccccccCCCCCEEECCCCCCcCc--CCccccCCcccEEEecCCCCccccchhh
Confidence 57899999999986532 334467788899999887653222 1246778888888888888777788888
Q ss_pred cCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcE
Q 001554 233 SKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKV 312 (1055)
Q Consensus 233 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 312 (1055)
.++++|+.|++++|.....+|..+ ++++|++|++++|.....+|.. ..+|++|++++|.+.. ++....+++|++
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--lP~~~~l~~L~~ 751 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--FPSNLRLENLDE 751 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--cccccccccccc
Confidence 888888888888876555667655 6788888888888766666643 4578888888776533 233334667777
Q ss_pred EEccCCcCC-------CCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEE
Q 001554 313 IELSETRFS-------GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLK 385 (1055)
Q Consensus 313 L~L~~n~l~-------~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 385 (1055)
|.+.++... ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|......+|++|+
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~ 831 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLD 831 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEE
Confidence 777653321 1111122334677888888877777777778888888888887776555555544444555555
Q ss_pred cccccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCccc
Q 001554 386 FAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKL 465 (1055)
Q Consensus 386 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l 465 (1055)
+++|.....+|.. ..+|++|++++|.++ .+|.++..+ ++|+.|++++|.-
T Consensus 832 Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l-------------------------~~L~~L~L~~C~~ 881 (1153)
T PLN03210 832 LSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKF-------------------------SNLSFLDMNGCNN 881 (1153)
T ss_pred CCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcC-------------------------CCCCEEECCCCCC
Confidence 5555444333321 234555555555544 344444444 4555555555433
Q ss_pred cCCCCccccCCCCCCEEEccCCC
Q 001554 466 QGLVPESIFQIKGLNVLRLSSNK 488 (1055)
Q Consensus 466 ~~~~p~~l~~l~~L~~L~L~~n~ 488 (1055)
-..+|..+..+++|+.+++++|.
T Consensus 882 L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 882 LQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCccCcccccccCCCeeecCCCc
Confidence 33455556667777777777764
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=1.7e-21 Score=230.94 Aligned_cols=93 Identities=30% Similarity=0.348 Sum_probs=41.0
Q ss_pred CCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECC
Q 001554 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG 751 (1055)
Q Consensus 672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 751 (1055)
+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|.. ..+|+.|+|+
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecC
Confidence 3445555555554 33331 2345555555555553 2221 123445555555555 23321 1345555555
Q ss_pred CCcCccccCccccCCCCCcEEEccCCcCc
Q 001554 752 KNQLNGSFPFWLETLPQLRVLVLQSNNYD 780 (1055)
Q Consensus 752 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 780 (1055)
+|+|++ +|.. .++|+.|++++|+++
T Consensus 351 ~N~Ls~-LP~l---p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 351 DNQLAS-LPTL---PSELYKLWAYNNRLT 375 (788)
T ss_pred CCccCC-CCCC---Ccccceehhhccccc
Confidence 555552 2321 123444444444444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3e-21 Score=228.82 Aligned_cols=242 Identities=26% Similarity=0.314 Sum_probs=175.2
Q ss_pred ccceeecCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEec
Q 001554 623 SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKL 702 (1055)
Q Consensus 623 ~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 702 (1055)
+++.|++++|+++. +|. ..++|++|++++|+++. +|.. .++|+.|++++|.++ .+|... .+|+.|++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence 34444444444442 222 13455666666666663 3432 357888999999887 555533 46888999
Q ss_pred cCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccc
Q 001554 703 RNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGS 782 (1055)
Q Consensus 703 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 782 (1055)
++|+++. +|.. .++|+.|++++|++++ +|... .+|+.|++++|++++ +|.. ..+|++|+|++|+|++
T Consensus 290 s~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 290 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS- 356 (788)
T ss_pred cCCcccc-cccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccCC-
Confidence 9998884 4542 4678999999999884 45422 467788899998874 5532 2478899999998885
Q ss_pred cCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHh
Q 001554 783 IKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAK 862 (1055)
Q Consensus 783 ~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1055)
+|. ..++|+.|++++|+++. +|.
T Consensus 357 LP~-----lp~~L~~L~Ls~N~L~~-LP~--------------------------------------------------- 379 (788)
T PRK15387 357 LPT-----LPSELYKLWAYNNRLTS-LPA--------------------------------------------------- 379 (788)
T ss_pred CCC-----CCcccceehhhcccccc-Ccc---------------------------------------------------
Confidence 332 13567888888888873 452
Q ss_pred hcccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeE
Q 001554 863 ILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVL 942 (1055)
Q Consensus 863 ~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l 942 (1055)
....|+.||+++|+|++ +|... +.|+.|++|+|+|++ ||... .+|+.|||++|+|+ .+|..+.+++.|+.|
T Consensus 380 l~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 380 LPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred cccccceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 12357889999999995 67543 678999999999994 88653 56788999999998 799999999999999
Q ss_pred ecCCCcCcccCCCC
Q 001554 943 KLSQNLLVGEIPRG 956 (1055)
Q Consensus 943 ~ls~N~L~g~iP~~ 956 (1055)
+|++|+|+|.+|..
T Consensus 451 dLs~N~Ls~~~~~~ 464 (788)
T PRK15387 451 NLEGNPLSERTLQA 464 (788)
T ss_pred ECCCCCCCchHHHH
Confidence 99999999998864
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.9e-20 Score=238.96 Aligned_cols=339 Identities=22% Similarity=0.247 Sum_probs=199.9
Q ss_pred hhhcCCCCCcEEeCCCCcC------CCCCcccccCCC-CCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCc
Q 001554 206 PILSILSNLRILSLPDCHV------AGPIHSSLSKLQ-LLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPE 278 (1055)
Q Consensus 206 ~~l~~l~~L~~L~L~~~~l------~~~~~~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (1055)
..|.+|++|+.|.+..+.. ...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 3455666666666644321 223444454443 4666666666554 344444 3456666666666653 3455
Q ss_pred ccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 001554 279 KIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTEL 358 (1055)
Q Consensus 279 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 358 (1055)
.+..+++|+.|+++++.. .+.+|. ++.+++|+.|++++|.....+|..+.++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~------------------------l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKN------------------------LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ccccCCCCCEEECCCCCC------------------------cCcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 555566666666665432 223332 4444445555554444444444444455555
Q ss_pred CEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCc
Q 001554 359 INIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQN 438 (1055)
Q Consensus 359 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 438 (1055)
+.|++++|...+.+|......+|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|++|.+.++
T Consensus 684 ~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred CEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-ccccccccccccc
Confidence 5555554443334444333334555555555444344321 345666666666654 344433 4566666666553
Q ss_pred cccC------CcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCC
Q 001554 439 KFHG------QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSEN 512 (1055)
Q Consensus 439 ~l~~------~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n 512 (1055)
.... .++.......++|+.|++++|.....+|.+++++++|+.|++++|...+.+|... .+++|+.|++++|
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c 835 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGC 835 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCC
Confidence 3110 1111222345689999999998888899999999999999999987655666443 6889999999998
Q ss_pred cceeecCCCCCCcCCccceeecccCcCcccchhhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEeccCc
Q 001554 513 NFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586 (1055)
Q Consensus 513 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N 586 (1055)
......+ ....+|++|++++|.++.+|.++..+++|+.|++++|+--..+|...... .+|+.+++++|
T Consensus 836 ~~L~~~p----~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L--~~L~~L~l~~C 903 (1153)
T PLN03210 836 SRLRTFP----DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL--KHLETVDFSDC 903 (1153)
T ss_pred Ccccccc----ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc--cCCCeeecCCC
Confidence 5432222 23468999999999999999999999999999999865444555543322 23555555444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=1.8e-19 Score=215.57 Aligned_cols=76 Identities=30% Similarity=0.470 Sum_probs=32.2
Q ss_pred CCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECC
Q 001554 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG 751 (1055)
Q Consensus 672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 751 (1055)
+|+.|++++|++. .+|..+. .+|+.|++++|+++. +|..+. .+|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 3444555555444 3443332 244444444444442 333322 24444444444444 2332221 234444444
Q ss_pred CCcCc
Q 001554 752 KNQLN 756 (1055)
Q Consensus 752 ~N~l~ 756 (1055)
+|+++
T Consensus 313 ~N~Lt 317 (754)
T PRK15370 313 SNSLT 317 (754)
T ss_pred CCccc
Confidence 44444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.4e-18 Score=208.13 Aligned_cols=291 Identities=24% Similarity=0.355 Sum_probs=165.7
Q ss_pred CCCEEECcCCCCCCcccccccccCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecC
Q 001554 551 NLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYS 630 (1055)
Q Consensus 551 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls 630 (1055)
+...|+++++.++ .+|..+. ..++.|++++|+++.++... ..+|+.|++++|.++.
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l----~~nL~~L~Ls~N~Lts--------------- 234 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENL----QGNIKTLYANSNQLTS--------------- 234 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhh----ccCCCEEECCCCcccc---------------
Confidence 5678888888887 4565432 24777888888777654322 1256666666666553
Q ss_pred CCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCccc
Q 001554 631 ENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGT 710 (1055)
Q Consensus 631 ~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 710 (1055)
+|..+. ..++.|++++|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++
T Consensus 235 -------LP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~- 297 (754)
T PRK15370 235 -------IPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT- 297 (754)
T ss_pred -------CChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-
Confidence 222221 23445555555555 3454443 35777777777776 4565543 367777777777764
Q ss_pred CCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccc
Q 001554 711 VPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTAN 790 (1055)
Q Consensus 711 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 790 (1055)
+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|++.. +|...
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--- 365 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--- 365 (754)
T ss_pred Ccccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh---
Confidence 344332 35777777777777 3454432 567777777777764 554443 567777777777652 33211
Q ss_pred cCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEE
Q 001554 791 AFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSI 870 (1055)
Q Consensus 791 ~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 870 (1055)
.+.|+.|++++|+++ .+|.... ..|+.|
T Consensus 366 -p~~L~~LdLs~N~Lt-~LP~~l~--------------------------------------------------~sL~~L 393 (754)
T PRK15370 366 -PPTITTLDVSRNALT-NLPENLP--------------------------------------------------AALQIM 393 (754)
T ss_pred -cCCcCEEECCCCcCC-CCCHhHH--------------------------------------------------HHHHHH
Confidence 246777777777776 3443210 124556
Q ss_pred EccCCcccccCcccc----cCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCccc-CcccccCCCCCCeEecC
Q 001554 871 DVSNNQFEGEIPEML----GDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGK-IPEKLATLNFLSVLKLS 945 (1055)
Q Consensus 871 dLs~N~l~g~ip~~~----~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~-ip~~l~~l~~L~~l~ls 945 (1055)
|+++|+|+ .+|+.+ +.++.+..|+|.+|.|+. ..+.+|+.| ++.+.+.|. |+.+++.++.++....-
T Consensus 394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~~~~~l 465 (754)
T PRK15370 394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVRVTRPL 465 (754)
T ss_pred hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccccccccccchH
Confidence 77777776 444433 334666777777777762 233344444 344555443 34444555555444334
Q ss_pred CCcCcccCC
Q 001554 946 QNLLVGEIP 954 (1055)
Q Consensus 946 ~N~L~g~iP 954 (1055)
++.+.+-+|
T Consensus 466 ~~a~~~Wl~ 474 (754)
T PRK15370 466 HQAVQGWLT 474 (754)
T ss_pred HHHHhccCC
Confidence 444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.6e-18 Score=194.18 Aligned_cols=135 Identities=27% Similarity=0.261 Sum_probs=57.9
Q ss_pred ccceeEEEccCCcCcCC----ccccccCCCCCCEEeccCCCCCC------CCCccccCCCcccEEeccCCcCcccCCccc
Q 001554 646 INYAVFFSLASNNLSGG----IPLSLCNAFDLQVLDLSDNHLTG------SIPSCLVSSNILKVLKLRNNEFLGTVPQVI 715 (1055)
Q Consensus 646 ~~~l~~l~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 715 (1055)
+..++.++++++.++.. ++..+...++++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 33455555555554332 33334444455555555555441 122233344455555555555543333333
Q ss_pred CCCCC---ccEEeCCCCcccc----cCcccccCC-CCCcEEECCCCcCccc----cCccccCCCCCcEEEccCCcCc
Q 001554 716 GNECS---LRTLDLSQNHLAG----SLPKSLSKC-TSLEVLDVGKNQLNGS----FPFWLETLPQLRVLVLQSNNYD 780 (1055)
Q Consensus 716 ~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 780 (1055)
..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 33322 5555555554442 112223333 4445555555544421 2223333444444444444443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=3.3e-18 Score=191.59 Aligned_cols=257 Identities=29% Similarity=0.293 Sum_probs=190.6
Q ss_pred EEccCCcCc-CCccccccCCCCCCEEeccCCCCCCC----CCccccCCCcccEEeccCCcCcc------cCCcccCCCCC
Q 001554 652 FSLASNNLS-GGIPLSLCNAFDLQVLDLSDNHLTGS----IPSCLVSSNILKVLKLRNNEFLG------TVPQVIGNECS 720 (1055)
Q Consensus 652 l~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~ 720 (1055)
|+|..+.++ +..+..+..+.+|+.|+++++.++.. ++..+...+.++.|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455566665 34445556677899999999998642 55666777889999999998872 34456778889
Q ss_pred ccEEeCCCCcccccCcccccCCCC---CcEEECCCCcCcc----ccCccccCC-CCCcEEEccCCcCccccCC--Ccccc
Q 001554 721 LRTLDLSQNHLAGSLPKSLSKCTS---LEVLDVGKNQLNG----SFPFWLETL-PQLRVLVLQSNNYDGSIKD--TQTAN 790 (1055)
Q Consensus 721 L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~~~~--~~~~~ 790 (1055)
|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++.... ...+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 999999999998777777766665 9999999999983 334456677 8999999999999853221 12345
Q ss_pred cCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEE
Q 001554 791 AFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSI 870 (1055)
Q Consensus 791 ~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 870 (1055)
.++.|+.|++++|.+++....... ......+.|+.|
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~--------------------------------------------~~l~~~~~L~~L 198 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALA--------------------------------------------EGLKANCNLEVL 198 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHH--------------------------------------------HHHHhCCCCCEE
Confidence 667899999999998752111110 001123578999
Q ss_pred EccCCccccc----CcccccCCCCCCEEECCCCccccccCccccC-----cCCCCeEeCCCCcCc----ccCcccccCCC
Q 001554 871 DVSNNQFEGE----IPEMLGDFDALLVLNMSNNNFKGQIPATLGN-----LKELGSLDLSHNQLS----GKIPEKLATLN 937 (1055)
Q Consensus 871 dLs~N~l~g~----ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-----L~~L~~LdLs~N~ls----g~ip~~l~~l~ 937 (1055)
++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .+.|++|++++|.++ +.++..+..++
T Consensus 199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 278 (319)
T cd00116 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE 278 (319)
T ss_pred eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence 9999999754 4455677889999999999999754444433 379999999999997 34556677789
Q ss_pred CCCeEecCCCcCccc
Q 001554 938 FLSVLKLSQNLLVGE 952 (1055)
Q Consensus 938 ~L~~l~ls~N~L~g~ 952 (1055)
.|+.+|+++|+++..
T Consensus 279 ~L~~l~l~~N~l~~~ 293 (319)
T cd00116 279 SLLELDLRGNKFGEE 293 (319)
T ss_pred CccEEECCCCCCcHH
Confidence 999999999998754
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.66 E-value=1.5e-16 Score=190.61 Aligned_cols=118 Identities=36% Similarity=0.647 Sum_probs=106.9
Q ss_pred cccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEecC
Q 001554 866 IFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLS 945 (1055)
Q Consensus 866 ~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls 945 (1055)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+|+|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCCC--cccccccccccCCCCCCCCCCCCCC
Q 001554 946 QNLLVGEIPRGPQ--FATFTAASFEGNAGLCGFPLPKACQ 983 (1055)
Q Consensus 946 ~N~L~g~iP~~~~--~~~~~~~s~~gn~~lcg~~~~~~c~ 983 (1055)
+|+++|.+|.... +.......+.||+++||.|..+.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 2233456789999999987666775
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=2.4e-17 Score=151.64 Aligned_cols=165 Identities=32% Similarity=0.584 Sum_probs=114.8
Q ss_pred CCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEE
Q 001554 694 SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLV 773 (1055)
Q Consensus 694 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 773 (1055)
+...+.|.|++|+++ .+|..++.+.+|+.|++.+|+|+ .+|.+++.+++|+.|+++-|++. ..|..|+.+|.|++||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 344555556666655 34555666666666666666666 56666677777777777777765 5666666666666666
Q ss_pred ccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEee
Q 001554 774 LQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMN 853 (1055)
Q Consensus 774 L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1055)
|.+|++... .+|-.+|
T Consensus 109 ltynnl~e~-------------------------~lpgnff--------------------------------------- 124 (264)
T KOG0617|consen 109 LTYNNLNEN-------------------------SLPGNFF--------------------------------------- 124 (264)
T ss_pred ccccccccc-------------------------cCCcchh---------------------------------------
Confidence 666654311 1121111
Q ss_pred cCchhHHHhhcccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccc
Q 001554 854 KGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKL 933 (1055)
Q Consensus 854 ~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l 933 (1055)
.+..++.|+|+.|.|. .+|+++|++++|+.|.+..|.+- +.|.++|.|+.|+.|.+.+|+++ .+|+++
T Consensus 125 ---------~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 125 ---------YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred ---------HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence 1344566778889887 78999999999999999999988 78999999999999999999998 567777
Q ss_pred cCCC
Q 001554 934 ATLN 937 (1055)
Q Consensus 934 ~~l~ 937 (1055)
+++.
T Consensus 193 ~~l~ 196 (264)
T KOG0617|consen 193 ANLD 196 (264)
T ss_pred hhhh
Confidence 7654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=6.4e-17 Score=148.85 Aligned_cols=167 Identities=27% Similarity=0.341 Sum_probs=124.3
Q ss_pred CccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHH
Q 001554 102 SLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEK 181 (1055)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~ 181 (1055)
.++++.+.+.|.||+|.++. +|..|..+.+|++|++++|++. ++|.+++.+++|+.|+++-|++ ..+++
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--------~~lpr 96 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--------NILPR 96 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--------hcCcc
Confidence 56677777778888888766 6777888888888888888876 7788888888888888877654 23455
Q ss_pred HhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCC
Q 001554 182 LVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSS 261 (1055)
Q Consensus 182 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~ 261 (1055)
.++.++.|+.|||.+|++.....|..|-.++.|+.|.|++|.+.- +|..++++++|+.|.+..|.+- .+|..++.++.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 566777777777777777766667777777778888888887754 6777888888888888888776 56777888888
Q ss_pred CcEEEccCCcCCCccCcccCC
Q 001554 262 LQYLHLSLCGLYGRVPEKIFL 282 (1055)
Q Consensus 262 L~~L~L~~n~l~~~~p~~l~~ 282 (1055)
|++|++.+|+++ .+|..+++
T Consensus 175 lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 175 LRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHHhcccceee-ecChhhhh
Confidence 888888888874 45555544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=8.2e-14 Score=167.16 Aligned_cols=128 Identities=28% Similarity=0.539 Sum_probs=98.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCc----ccceeEecC--CCC--cEEEEEcCCCccccccCCC
Q 001554 29 SGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCC----SWDGVTCDP--RTG--HVIGLDISSSFITGGINGS 100 (1055)
Q Consensus 29 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~~l~~W~~~~~~c----~w~gv~C~~--~~~--~v~~L~L~~~~l~g~~~~~ 100 (1055)
...+.++|.+||+++|+++..+. ..+|. +..|| .|.||.|+. .++ +|+.|+|+++.+.|.+|.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~-------~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~- 436 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL-------RFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN- 436 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc-------cCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-
Confidence 44567889999999999985432 13796 44553 799999953 222 588999999999888877
Q ss_pred CCccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCC
Q 001554 101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASG 167 (1055)
Q Consensus 101 ~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~ 167 (1055)
.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|.++|.+|..+++|++|++|+|++|.
T Consensus 437 -~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 437 -DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred -HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 788888888888888888776 77778888888888888888887788777777777777777654
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=7.6e-13 Score=144.40 Aligned_cols=114 Identities=31% Similarity=0.468 Sum_probs=71.9
Q ss_pred CccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccC
Q 001554 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSK 741 (1055)
Q Consensus 662 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 741 (1055)
.+|..++.+..|+.+.++.|.+. .+|.+++++..|++|||+.|+++ ..|..++.++ |+.|-+++|+++ .+|+.++.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~ 164 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL 164 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc
Confidence 35555555566666666666666 66666666666677777777666 4455555543 666666666666 56666666
Q ss_pred CCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCc
Q 001554 742 CTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780 (1055)
Q Consensus 742 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 780 (1055)
...|..||.+.|.+. .+|..++.+.+|+.|.++.|++.
T Consensus 165 ~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence 666666666666665 45555666666666666666543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=2.5e-12 Score=140.47 Aligned_cols=123 Identities=28% Similarity=0.376 Sum_probs=88.4
Q ss_pred eEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCC
Q 001554 650 VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN 729 (1055)
Q Consensus 650 ~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 729 (1055)
+.+.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|++..|++.. +|+.++. -.|..||++.|
T Consensus 146 kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScN 221 (722)
T KOG0532|consen 146 KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCN 221 (722)
T ss_pred eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccC
Confidence 35555555554 45666777777888888888887 778888888888888888888774 5555663 35788888888
Q ss_pred cccccCcccccCCCCCcEEECCCCcCccccCccc---cCCCCCcEEEccCCc
Q 001554 730 HLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWL---ETLPQLRVLVLQSNN 778 (1055)
Q Consensus 730 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~ 778 (1055)
+++ .+|..|.+++.|++|-|.+|.+. ..|..+ +...-.++|+.+-++
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 888 78888888888888888888886 444443 234445677777664
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=9.5e-11 Score=135.04 Aligned_cols=102 Identities=36% Similarity=0.483 Sum_probs=56.0
Q ss_pred EEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCC-CccEEeCCCCcccccCcccccCCCCCcEEECCCC
Q 001554 675 VLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNEC-SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKN 753 (1055)
Q Consensus 675 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 753 (1055)
.++++.|.+... +..+...+.++.|++.+|+++. +|....... +|+.|++++|++. .+|..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 455555555322 2223333556666666666663 333344442 6666666666666 45455666666666666666
Q ss_pred cCccccCccccCCCCCcEEEccCCcCc
Q 001554 754 QLNGSFPFWLETLPQLRVLVLQSNNYD 780 (1055)
Q Consensus 754 ~l~~~~p~~l~~l~~L~~L~L~~N~l~ 780 (1055)
+++ .+|...+.++.|+.|++++|++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc
Confidence 665 33433335555666666666554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.3e-10 Score=133.92 Aligned_cols=199 Identities=35% Similarity=0.512 Sum_probs=136.0
Q ss_pred EEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCC-cccEEeccCCcCcccCCcccCCCCCccEEeCCCCc
Q 001554 652 FSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSN-ILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNH 730 (1055)
Q Consensus 652 l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 730 (1055)
+.+..|.+...+. .+...+.++.|++.+|+++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus 98 l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4444454432222 2334467899999999999 7777777774 8999999999988 455678899999999999999
Q ss_pred ccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCC
Q 001554 731 LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLP 810 (1055)
Q Consensus 731 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p 810 (1055)
++ .+|...+..+.|+.|++++|++. .+|........|++|.+++|++...+. ...
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~-------------------- 229 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS---SLS-------------------- 229 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch---hhh--------------------
Confidence 99 67766668899999999999998 556555555557777777664211110 001
Q ss_pred hHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEEEccCCcccccCcccccCCCC
Q 001554 811 ARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDA 890 (1055)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~ 890 (1055)
.+..+..+.+++|++. .+|..++.+..
T Consensus 230 ----------------------------------------------------~~~~l~~l~l~~n~~~-~~~~~~~~l~~ 256 (394)
T COG4886 230 ----------------------------------------------------NLKNLSGLELSNNKLE-DLPESIGNLSN 256 (394)
T ss_pred ----------------------------------------------------hcccccccccCCceee-eccchhccccc
Confidence 2233444456666665 33566677777
Q ss_pred CCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccc
Q 001554 891 LLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKL 933 (1055)
Q Consensus 891 L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l 933 (1055)
++.|++++|+++ .++. ++.+.+++.||+++|.++...|...
T Consensus 257 l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 257 LETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 777777777777 4444 7777777777777777776665543
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=6.7e-12 Score=129.89 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCCCCEEEccCCcCCC----CCcccccCCCCCCEEEeecCCC
Q 001554 331 LALLEDLELSDCNFFG----SIPSSFGNLTELINIDFSRNNF 368 (1055)
Q Consensus 331 l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l 368 (1055)
.++|++|.+.+|.++. .+...+...+.|+.|+|++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5667777777776653 1222344567777777777777
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=1.9e-11 Score=126.54 Aligned_cols=241 Identities=20% Similarity=0.217 Sum_probs=122.9
Q ss_pred CcEEEEEcCCCccccc----cCCCCCccCCCCCCeeeCCCCCCCCC---CCCc-------cCCCCCCCCEEeCCCCCCCC
Q 001554 81 GHVIGLDISSSFITGG----INGSSSLFDLQRLQHLNLADNSLYSS---PFPS-------GFDRLFSLTHLNLSYSGFSG 146 (1055)
Q Consensus 81 ~~v~~L~L~~~~l~g~----~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~-------~l~~l~~L~~L~Ls~n~~~~ 146 (1055)
..+++|+|+|+.+.-. +.. .+.+.+.|+..++|+-- ++. .+|+ .+-.+++|++||||+|.|..
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~--~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAK--VLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHH--HHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 4577888888876422 222 45566677777777532 121 1332 33445577777777776654
Q ss_pred CCChh----cccCCCCcEEEecCCCCCCchhhccc------cHHHHhcCCCCCceeeCCCcccCCCC---CchhhcCCCC
Q 001554 147 HIPLE----ISSLKMLVSLDLSASGLVAPIQLRRA------NLEKLVKNLTNLEELYLGGIDISGAD---WGPILSILSN 213 (1055)
Q Consensus 147 ~~p~~----l~~L~~L~~L~Ls~n~~~~~~~~~~~------~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~ 213 (1055)
..+.. |.++..|++|.|.+|.+...-..... ........-+.|+.+...+|++.... +...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 44432 34566666666666655321000000 01122344455666666666554322 3334445555
Q ss_pred CcEEeCCCCcCCCC----CcccccCCCCCCEEECCCCCCCCCc----chhccCCCCCcEEEccCCcCCCccCcccCCCCC
Q 001554 214 LRILSLPDCHVAGP----IHSSLSKLQLLTHLNLDGNDLSSEV----PDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPS 285 (1055)
Q Consensus 214 L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (1055)
|+.+.+..|.+... +..++..+++|++|||..|.++... ...+..+++|++|++++|.+...-..++..
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~--- 263 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD--- 263 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH---
Confidence 66666665554422 1234455566666666666554321 223444555555555555554332222110
Q ss_pred CcEEEccCCCCCCCCCCCCC-CCCCCcEEEccCCcCCC----CCcccccCCCCCCEEEccCCcC
Q 001554 286 LCFLDVSSNSNLTGSLPEFP-PSSQLKVIELSETRFSG----KLPDSINNLALLEDLELSDCNF 344 (1055)
Q Consensus 286 L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l 344 (1055)
.+. ..+.|+.|.+.+|.++. .+...+...+.|+.|+|++|.+
T Consensus 264 -----------------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 -----------------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -----------------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 011 13455555555666642 2233455678888888888888
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.1e-10 Score=124.25 Aligned_cols=218 Identities=22% Similarity=0.188 Sum_probs=125.2
Q ss_pred CCCCCCCEEeCCCCCCCCCCC--hhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCch
Q 001554 129 DRLFSLTHLNLSYSGFSGHIP--LEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGP 206 (1055)
Q Consensus 129 ~~l~~L~~L~Ls~n~~~~~~p--~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 206 (1055)
.++++||...|.++... ..+ .....|++++.||||.|-+.+ -..+......+++|+.|+++.|++.......
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~n-----w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHN-----WFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHh-----HHHHHHHHHhcccchhcccccccccCCcccc
Confidence 45778888888888765 333 355678888888888875432 1234455677888888888888776443222
Q ss_pred hhcCCCCCcEEeCCCCcCCCC-CcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCcc-CcccCCCC
Q 001554 207 ILSILSNLRILSLPDCHVAGP-IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRV-PEKIFLMP 284 (1055)
Q Consensus 207 ~l~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~ 284 (1055)
.-..+++|+.|.|+.|.++.. +-..+..+|+|+.|+|.+|...........-+..|++|+|++|++-..- -...+.++
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 334567777777777777642 2223445677777777777432222233334556666777666653221 12345566
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCC-CcccccCCCCCCEEEe
Q 001554 285 SLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGS-IPSSFGNLTELINIDF 363 (1055)
Q Consensus 285 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L 363 (1055)
.|+.|+++.+.+.+...++. ..-+-...+++|++|++..|++... --..+..+++|+.|.+
T Consensus 272 ~L~~Lnls~tgi~si~~~d~------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDV------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred chhhhhccccCcchhcCCCc------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 66666666444333222211 0001134567777777777777421 1123445566777777
Q ss_pred ecCCCCC
Q 001554 364 SRNNFSG 370 (1055)
Q Consensus 364 s~n~l~~ 370 (1055)
..|.++.
T Consensus 334 ~~n~ln~ 340 (505)
T KOG3207|consen 334 TLNYLNK 340 (505)
T ss_pred ccccccc
Confidence 7777653
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.8e-11 Score=125.31 Aligned_cols=209 Identities=27% Similarity=0.290 Sum_probs=98.2
Q ss_pred CCCCcEEEccCCcCCCCCc-ccccCCCCCCEEEccCCcCCCCCc--ccccCCCCCCEEEeecCCCCCCCCcccccCcccE
Q 001554 307 SSQLKVIELSETRFSGKLP-DSINNLALLEDLELSDCNFFGSIP--SSFGNLTELINIDFSRNNFSGSLPSFASSNKVIS 383 (1055)
Q Consensus 307 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 383 (1055)
+.+|+++.|.++......- .....|++++.|||+.|-+....+ .-...+++|+.|+++.|++........
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~------- 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT------- 192 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-------
Confidence 4555556665555442111 234455556666666555442211 223345555555555555542111110
Q ss_pred EEcccccCccccCcccccCCCCccEEEccCcccccc-cccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccC
Q 001554 384 LKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGI-IPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQ 462 (1055)
Q Consensus 384 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 462 (1055)
-..++.|+.|.++.|.++-. +-..+..+|+|+.|++..|... .+.......+..|++|||++
T Consensus 193 ----------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 193 ----------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSN 255 (505)
T ss_pred ----------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccC
Confidence 12344555566666655422 1222334455555555555311 11111112333444444444
Q ss_pred ccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCC-----CCcCCccceeecccC
Q 001554 463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSN-----SNMFPKIGTLKLSSC 537 (1055)
Q Consensus 463 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~~~~L~~L~L~~n 537 (1055)
|++ ...-.......++.|+.|+++.+.+........ ...+|+|++|++..|
T Consensus 256 N~l------------------------i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 256 NNL------------------------IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred Ccc------------------------cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 444 332222223334444444444444332221111 345778888888888
Q ss_pred cCcccc--hhhhCCCCCCEEECcCCCCC
Q 001554 538 KITEFP--NFLRNQTNLFHLDLSNNRIK 563 (1055)
Q Consensus 538 ~l~~ip--~~l~~l~~L~~L~Ls~N~l~ 563 (1055)
++.+++ ..+..+++|+.|.+..|.++
T Consensus 312 ~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 312 NIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccccchhhccchhhhhhccccccc
Confidence 877665 34666777777777777765
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=9.3e-10 Score=107.87 Aligned_cols=111 Identities=32% Similarity=0.403 Sum_probs=33.5
Q ss_pred CccCCCCCCeeeCCCCCCCCCCCCccCC-CCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHH
Q 001554 102 SLFDLQRLQHLNLADNSLYSSPFPSGFD-RLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLE 180 (1055)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~ 180 (1055)
.+.+..++++|+|++|.+... +.++ .+.+|++|+|++|.++ .++ .+..+++|++|++++|.+.. +.
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~--------i~ 80 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS--------IS 80 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S---------C
T ss_pred ccccccccccccccccccccc---cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc--------cc
Confidence 455566788888888887653 3555 5778888888888886 443 47778888888888887643 11
Q ss_pred HHh-cCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCC
Q 001554 181 KLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVA 225 (1055)
Q Consensus 181 ~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~ 225 (1055)
..+ ..+++|++|++++|++........++.+++|++|+|.+|.+.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 112 356777777777777766554445555555555555555443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=7.9e-10 Score=108.38 Aligned_cols=124 Identities=28% Similarity=0.377 Sum_probs=37.2
Q ss_pred CCCCCEEeccCCCCCCCCCcccc-CCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccc-cCCCCCcE
Q 001554 670 AFDLQVLDLSDNHLTGSIPSCLV-SSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSL-SKCTSLEV 747 (1055)
Q Consensus 670 l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~ 747 (1055)
...+++|+|++|.++. +. .++ .+.+|+.|+|++|.|+.. +.+..++.|++|++++|+|+. +++.+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 3456777777777762 32 343 456677777777777643 245666777777777777773 33333 35677777
Q ss_pred EECCCCcCccccC-ccccCCCCCcEEEccCCcCccccCCC--cccccCCCCcEEe
Q 001554 748 LDVGKNQLNGSFP-FWLETLPQLRVLVLQSNNYDGSIKDT--QTANAFALLQIID 799 (1055)
Q Consensus 748 L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~Ld 799 (1055)
|++++|+|...-. ..+..+++|++|+|.+|++... +.. ..+..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 7777777654211 3345566666666666666432 110 1234455555555
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=1e-09 Score=110.68 Aligned_cols=207 Identities=22% Similarity=0.250 Sum_probs=95.2
Q ss_pred CCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEccccc-CccccCccccc
Q 001554 323 KLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNS-FTGTIPLSYGD 401 (1055)
Q Consensus 323 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~ 401 (1055)
.+|-.+.-+++|..+.++.|.-.. +...-..-|.|+++.+.+.-++ ..|.......+.......-. ..|..-.. ..
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~-~d 281 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVS-AD 281 (490)
T ss_pred ccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEe-cc
Confidence 344445566777777777765331 1111122356667766554433 22222211111111111100 11111111 12
Q ss_pred CCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCE
Q 001554 402 QLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNV 481 (1055)
Q Consensus 402 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 481 (1055)
....|+++|+++|.++ .+..+..-.|.++.|++++|.+.. +... ..+++|+.||+++|.++.. ..+-..+-+++.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~nL--a~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQNL--AELPQLQLLDLSGNLLAEC-VGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-ehhh--hhcccceEeecccchhHhh-hhhHhhhcCEee
Confidence 3445667777777666 445555556666666666666652 2221 4455666666666655522 222334455556
Q ss_pred EEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCc
Q 001554 482 LRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT 540 (1055)
Q Consensus 482 L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 540 (1055)
|.|+.|.+.. ...+..+.+|..||+++|+|.........+.+|.|+++.+.+|.+.
T Consensus 357 L~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6666665542 2334445555555555555543322222333344444444444333
No 36
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.88 E-value=1.8e-09 Score=79.19 Aligned_cols=40 Identities=48% Similarity=0.984 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccCCCCCC--CCCcccceeEec
Q 001554 34 EDQKLLLLEFKRGLSFDPQTDSTNKLLSWSST--TDCCSWDGVTCD 77 (1055)
Q Consensus 34 ~~~~~aLl~~k~~~~~~~~~~~~~~l~~W~~~--~~~c~w~gv~C~ 77 (1055)
++|++||++||+++..++. ..+.+|+.. .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~----~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS----GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-----CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC----cccccCCCcCCCCCeeeccEEeC
Confidence 6899999999999986553 389999876 799999999996
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=1.1e-09 Score=110.49 Aligned_cols=131 Identities=26% Similarity=0.305 Sum_probs=71.2
Q ss_pred CCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECC
Q 001554 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG 751 (1055)
Q Consensus 672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 751 (1055)
.|+++|||+|.++ .+..+..-.+.++.|++++|.+... ..++.+++|+.|||++|.++ .+..+-..+-+.+.|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 3555666666555 4444454555566666666665532 22555566666666666665 333333445556666666
Q ss_pred CCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCC
Q 001554 752 KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNL 809 (1055)
Q Consensus 752 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~ 809 (1055)
.|.|... ..++++-+|..||+++|+|.. +.....++.+|-|+++.|.+|++.+..
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCccccc
Confidence 6655421 224455555666666666542 222334566666666667777666543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=1.3e-08 Score=125.03 Aligned_cols=200 Identities=24% Similarity=0.209 Sum_probs=104.6
Q ss_pred cEEEEEcCCCccccccCCCCCccCCCCCCeeeCCCCC--CCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCc
Q 001554 82 HVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNS--LYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV 159 (1055)
Q Consensus 82 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~ 159 (1055)
.|+.+.+.++.+.-. + .-...+.|++|=+..|. +... -+++|..++.|++|||++|.-.+.+|.+|++|.+||
T Consensus 524 ~~rr~s~~~~~~~~~-~---~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI-A---GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred heeEEEEeccchhhc-c---CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 455555555544311 1 11233357777666664 3221 224466777777777777655567777777777777
Q ss_pred EEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCC--CCCcccccCCCC
Q 001554 160 SLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVA--GPIHSSLSKLQL 237 (1055)
Q Consensus 160 ~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~--~~~~~~l~~l~~ 237 (1055)
+|+++.+.+ ..+|..+++++.|.+|++..+...... +.....+++|++|.+..-... ...-..+.++.+
T Consensus 599 yL~L~~t~I--------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 599 YLDLSDTGI--------SHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred cccccCCCc--------cccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 777777543 345666777777777777665433222 444555777777777655422 112233445555
Q ss_pred CCEEECCCCCCCCCcchhccCCCCCc----EEEccCCcCCCccCcccCCCCCCcEEEccCCCCCC
Q 001554 238 LTHLNLDGNDLSSEVPDFLTNFSSLQ----YLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLT 298 (1055)
Q Consensus 238 L~~L~Ls~n~~~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~ 298 (1055)
|+.+....... .+-..+..+..|+ .+.+.++.. ...+..+..+.+|+.|.+.++....
T Consensus 670 L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 670 LENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhhheeecchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCch
Confidence 55555433222 1111122222222 222222222 2334455667777777777665543
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2.8e-09 Score=122.79 Aligned_cols=241 Identities=25% Similarity=0.250 Sum_probs=135.6
Q ss_pred eEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCC
Q 001554 650 VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN 729 (1055)
Q Consensus 650 ~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 729 (1055)
+.+.+..|.+.. +-..++.+.+|+.|++.+|++.+ +...+..+.+|++|++++|.|+... .+..++.|+.|++++|
T Consensus 75 ~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 75 KELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGN 150 (414)
T ss_pred Hhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccC
Confidence 344444444443 22234556667777777777663 3332555666667777777666542 2445555666666666
Q ss_pred cccccCcccccCCCCCcEEECCCCcCccccC-ccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccC
Q 001554 730 HLAGSLPKSLSKCTSLEVLDVGKNQLNGSFP-FWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGN 808 (1055)
Q Consensus 730 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ 808 (1055)
.|+. + ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+...- ....+..+..+++..|.++..
T Consensus 151 ~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 151 LISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred cchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc----chHHHHHHHHhhcccccceec
Confidence 6662 2 223445666666666666664433 2 355566666666666553211 112222233334444444311
Q ss_pred CChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcc--cccEEEccCCcccccCccccc
Q 001554 809 LPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILT--IFTSIDVSNNQFEGEIPEMLG 886 (1055)
Q Consensus 809 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~LdLs~N~l~g~ip~~~~ 886 (1055)
-+. . .+. +++.+++++|++. .+++.+.
T Consensus 224 ~~l---------------------------------------------~-----~~~~~~L~~l~l~~n~i~-~~~~~~~ 252 (414)
T KOG0531|consen 224 EGL---------------------------------------------N-----ELVMLHLRELYLSGNRIS-RSPEGLE 252 (414)
T ss_pred cCc---------------------------------------------c-----cchhHHHHHHhcccCccc-ccccccc
Confidence 110 0 011 2567788888887 4546677
Q ss_pred CCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCccc--Cccc--ccCCCCCCeEecCCCcCcccCC
Q 001554 887 DFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGK--IPEK--LATLNFLSVLKLSQNLLVGEIP 954 (1055)
Q Consensus 887 ~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~--ip~~--l~~l~~L~~l~ls~N~L~g~iP 954 (1055)
.+..+..|+++.|++...- .+.....+..+.++.|.+... +... .+....+....+.+|......+
T Consensus 253 ~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 253 NLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 7788888888888887432 245566777778888877632 2222 5667778888888887776665
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.2e-08 Score=82.01 Aligned_cols=59 Identities=37% Similarity=0.512 Sum_probs=30.2
Q ss_pred CCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEecCCCc
Q 001554 890 ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNL 948 (1055)
Q Consensus 890 ~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~ 948 (1055)
+|+.|++++|+|+..-+..|.++++|++||+++|+++...|..|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555553333445555555555555555554444455555555555555554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=1.6e-08 Score=81.42 Aligned_cols=61 Identities=36% Similarity=0.537 Sum_probs=56.4
Q ss_pred ccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcC
Q 001554 865 TIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQL 925 (1055)
Q Consensus 865 ~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~l 925 (1055)
+.|+.|++++|+++...+..|..+++|+.|++++|++++..|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3578999999999977678899999999999999999988888999999999999999986
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.64 E-value=1.1e-08 Score=125.47 Aligned_cols=252 Identities=24% Similarity=0.273 Sum_probs=144.7
Q ss_pred CcEEEEEcCCCcc-ccccCCCCCccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCc
Q 001554 81 GHVIGLDISSSFI-TGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV 159 (1055)
Q Consensus 81 ~~v~~L~L~~~~l-~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~ 159 (1055)
..++.|-+.++.- -..++. ..+..++.|++|||++|.--+. +|++|+.|-+||||+|+++.+. .+|..+++|+.|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 3577777777641 112322 1366799999999999765555 9999999999999999999998 9999999999999
Q ss_pred EEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccC-CCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCC
Q 001554 160 SLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDIS-GADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLL 238 (1055)
Q Consensus 160 ~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 238 (1055)
+|++..+... ...+.....+.+||+|.+...... +......+..+.+|+.+....... .+-..+..++.|
T Consensus 622 ~Lnl~~~~~l-------~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L 692 (889)
T KOG4658|consen 622 YLNLEVTGRL-------ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRL 692 (889)
T ss_pred eecccccccc-------ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHH
Confidence 9999986421 122445677999999998766422 222234455666666666644433 111122223322
Q ss_pred C----EEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCC------CCCCcEEEccCCCCCCCCCCCCCCCC
Q 001554 239 T----HLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL------MPSLCFLDVSSNSNLTGSLPEFPPSS 308 (1055)
Q Consensus 239 ~----~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~~~~~~~~~~~~l~ 308 (1055)
. .+.+.++... ..+..+..+.+|+.|.+.+|.+.......... ++++..+.+..+.... ........+
T Consensus 693 ~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~ 770 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAP 770 (889)
T ss_pred HHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-ccchhhccC
Confidence 2 2222222222 33445666777777777777764322211111 1122222222221111 011112356
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCC
Q 001554 309 QLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFG 346 (1055)
Q Consensus 309 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 346 (1055)
+|+.|.+..+.....+.+....+..++.+.+..+.+.+
T Consensus 771 ~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 771 HLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred cccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 66666666665554444444444455544555554443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.7e-10 Score=111.09 Aligned_cols=180 Identities=26% Similarity=0.292 Sum_probs=113.8
Q ss_pred CCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCC
Q 001554 108 RLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLT 187 (1055)
Q Consensus 108 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~ 187 (1055)
.|++||||...++...+-.-+..+.+|+.|.|.++.+.+.+-..|.+=.+|+.|+++.+. .++.....-.+.+|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-----G~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-----GFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-----ccchhHHHHHHHhhh
Confidence 478888888777654344456677888888888888877777778888888888888753 223344555677888
Q ss_pred CCceeeCCCcccCCCCCchhhc-CCCCCcEEeCCCCcCCC---CCcccccCCCCCCEEECCCCC-CCCCcchhccCCCCC
Q 001554 188 NLEELYLGGIDISGADWGPILS-ILSNLRILSLPDCHVAG---PIHSSLSKLQLLTHLNLDGND-LSSEVPDFLTNFSSL 262 (1055)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~~l~~L 262 (1055)
.|.+|+++|+.++.......+. --++|+.|+|+++.-.- .+..-...+++|.+|||+.|. ++......|.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 8888888888776544333332 23567777777764221 122223467777777777654 333333456667777
Q ss_pred cEEEccCCcCCCccCcc---cCCCCCCcEEEccCC
Q 001554 263 QYLHLSLCGLYGRVPEK---IFLMPSLCFLDVSSN 294 (1055)
Q Consensus 263 ~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n 294 (1055)
++|.++.|.. .+|.. +...|.|.+||+.++
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 7777777753 44443 344566666666544
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=4.7e-09 Score=120.97 Aligned_cols=151 Identities=30% Similarity=0.296 Sum_probs=93.8
Q ss_pred CCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHHHhc
Q 001554 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVK 184 (1055)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~ 184 (1055)
.+..++.+++..|.+.. +-..++.+++|.+|++.+|.+. .+...+..+++|++|++++|.|+..- .+.
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~---------~l~ 137 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE---------GLS 137 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc---------chh
Confidence 45666677777777655 2344677788888888888776 44433677788888888887764421 244
Q ss_pred CCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCc-ccccCCCCCCEEECCCCCCCCCcchhccCCCCCc
Q 001554 185 NLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIH-SSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQ 263 (1055)
Q Consensus 185 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~ 263 (1055)
.++.|+.|++++|.++... .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+.
T Consensus 138 ~l~~L~~L~l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~ 211 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLISDIS---GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLV 211 (414)
T ss_pred hccchhhheeccCcchhcc---CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHH
Confidence 5556777777777776543 33446677777777776665333 2 45666777777777766532 2233334444
Q ss_pred EEEccCCcCC
Q 001554 264 YLHLSLCGLY 273 (1055)
Q Consensus 264 ~L~L~~n~l~ 273 (1055)
.+++..|.++
T Consensus 212 ~~~l~~n~i~ 221 (414)
T KOG0531|consen 212 LLSLLDNKIS 221 (414)
T ss_pred Hhhcccccce
Confidence 4466666554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.7e-09 Score=107.90 Aligned_cols=212 Identities=22% Similarity=0.191 Sum_probs=117.8
Q ss_pred ccceeEecCCCCcEEEEEcCCCccccccCCCCCccCCC--CCCeeeCCCCCCCCCCCCccCCCC-CCCCEEeCCCCCCCC
Q 001554 70 SWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQ--RLQHLNLADNSLYSSPFPSGFDRL-FSLTHLNLSYSGFSG 146 (1055)
Q Consensus 70 ~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~--~L~~L~Ls~n~~~~~~lp~~l~~l-~~L~~L~Ls~n~~~~ 146 (1055)
+|.|+.-+. .--+.+|+.+..+... .++.+. ...++.+.........+.+.+.-+ +.|++||||+..++.
T Consensus 127 Rfyr~~~de--~lW~~lDl~~r~i~p~-----~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~ 199 (419)
T KOG2120|consen 127 RFYRLASDE--SLWQTLDLTGRNIHPD-----VLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITV 199 (419)
T ss_pred HHhhccccc--cceeeeccCCCccChh-----HHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeH
Confidence 566655543 3467888888776521 333332 344444443322222122222222 358888888877652
Q ss_pred C-CChhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCc-ccCCCCCchhhcCCCCCcEEeCCCCcC
Q 001554 147 H-IPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGI-DISGADWGPILSILSNLRILSLPDCHV 224 (1055)
Q Consensus 147 ~-~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~L~~~~l 224 (1055)
. +-.-+..|.+|+.|.+.++.+.+ .+...+++-.+|+.|+++.+ .++.....-.+..++.|..|+|++|.+
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~LdD-------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLRLDD-------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHHHHHHHhhhhccccccccCc-------HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 2 22335677788888777766533 34556777778888887765 344444444567777888888888876
Q ss_pred CCCCcccc-cC-CCCCCEEECCCCCC---CCCcchhccCCCCCcEEEccCCc-CCCccCcccCCCCCCcEEEccCCC
Q 001554 225 AGPIHSSL-SK-LQLLTHLNLDGNDL---SSEVPDFLTNFSSLQYLHLSLCG-LYGRVPEKIFLMPSLCFLDVSSNS 295 (1055)
Q Consensus 225 ~~~~~~~l-~~-l~~L~~L~Ls~n~~---~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (1055)
..+....+ .. -++|+.|+|+++.- ...+..-...+++|.+|||++|. ++......+.+++.|++|.++.|.
T Consensus 273 ~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 273 FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 65432221 11 24666677766531 11222233456667777776663 233333445566666666666553
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=3.9e-08 Score=88.30 Aligned_cols=88 Identities=31% Similarity=0.452 Sum_probs=60.6
Q ss_pred ccccEEEccCCcccccCcccccC-CCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEe
Q 001554 865 TIFTSIDVSNNQFEGEIPEMLGD-FDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLK 943 (1055)
Q Consensus 865 ~~l~~LdLs~N~l~g~ip~~~~~-l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ 943 (1055)
..++.++||+|.|. ..|+.|.. .+.++.|||++|.|+ .+|.+++.++.|+.|+++.|.|.- .|..+..|.+|..||
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhc
Confidence 34566777777777 45555444 346777788888887 677778888888888888887773 456666677777777
Q ss_pred cCCCcCcccCCCC
Q 001554 944 LSQNLLVGEIPRG 956 (1055)
Q Consensus 944 ls~N~L~g~iP~~ 956 (1055)
.-.|.+. +||..
T Consensus 130 s~~na~~-eid~d 141 (177)
T KOG4579|consen 130 SPENARA-EIDVD 141 (177)
T ss_pred CCCCccc-cCcHH
Confidence 7777653 56644
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=1.7e-07 Score=93.91 Aligned_cols=214 Identities=21% Similarity=0.245 Sum_probs=130.3
Q ss_pred CcEEEEEcCCCccccccCC--CCCccCCCCCCeeeCCCCCCCCC--CCC-------ccCCCCCCCCEEeCCCCCCCCCCC
Q 001554 81 GHVIGLDISSSFITGGING--SSSLFDLQRLQHLNLADNSLYSS--PFP-------SGFDRLFSLTHLNLSYSGFSGHIP 149 (1055)
Q Consensus 81 ~~v~~L~L~~~~l~g~~~~--~~~l~~l~~L~~L~Ls~n~~~~~--~lp-------~~l~~l~~L~~L~Ls~n~~~~~~p 149 (1055)
..++.+|||||.+..+-.. ...|.+-++|++.++|.-..... .++ ..+-+|++|+..+||+|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4688899999987543211 01456678888888886432211 122 356678889999999998877666
Q ss_pred hh----cccCCCCcEEEecCCCCCCchhhccc------cHHHHhcCCCCCceeeCCCcccCCCC---CchhhcCCCCCcE
Q 001554 150 LE----ISSLKMLVSLDLSASGLVAPIQLRRA------NLEKLVKNLTNLEELYLGGIDISGAD---WGPILSILSNLRI 216 (1055)
Q Consensus 150 ~~----l~~L~~L~~L~Ls~n~~~~~~~~~~~------~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~ 216 (1055)
.. |++-+.|++|.+++|.+...-..... ...+..++.+.|+......|++.... |...+..-.+|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 54 45667888888888876432111111 11233456778888888888766332 2333333467888
Q ss_pred EeCCCCcCCCC-----CcccccCCCCCCEEECCCCCCCCCc----chhccCCCCCcEEEccCCcCCCccCcccC------
Q 001554 217 LSLPDCHVAGP-----IHSSLSKLQLLTHLNLDGNDLSSEV----PDFLTNFSSLQYLHLSLCGLYGRVPEKIF------ 281 (1055)
Q Consensus 217 L~L~~~~l~~~-----~~~~l~~l~~L~~L~Ls~n~~~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~------ 281 (1055)
+.+..|.+... +...+..+.+|+.|||..|.++-.. ...+...+.|++|.+.+|-++..-..++.
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~ 269 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK 269 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence 88888776543 1123456678888888888776432 23445566778888888776544332221
Q ss_pred CCCCCcEEEccCC
Q 001554 282 LMPSLCFLDVSSN 294 (1055)
Q Consensus 282 ~l~~L~~L~Ls~n 294 (1055)
..++|..|...+|
T Consensus 270 ~~p~l~~L~~~Yn 282 (388)
T COG5238 270 FVPNLMPLPGDYN 282 (388)
T ss_pred cCCCccccccchh
Confidence 1355555555544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.3e-07 Score=106.81 Aligned_cols=197 Identities=24% Similarity=0.280 Sum_probs=121.9
Q ss_pred CCCcEEEccCCcCCCCC-cccccCCCCCCEEEccCCcCCCCCcccccCC-CCCCEEEeecCCC----------CCCCCcc
Q 001554 308 SQLKVIELSETRFSGKL-PDSINNLALLEDLELSDCNFFGSIPSSFGNL-TELINIDFSRNNF----------SGSLPSF 375 (1055)
Q Consensus 308 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l----------~~~~~~~ 375 (1055)
++++.|.+-.-.-.+.. |-.+..+.+|++|.+.+|.+... ..+..+ ..|++|-- .|.+ .|.+...
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc
Confidence 44444444333222222 55677888999999999987631 111111 12333321 1211 1222222
Q ss_pred cccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCc
Q 001554 376 ASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSL 455 (1055)
Q Consensus 376 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L 455 (1055)
..-..|.+.++++|.+.- +.. .+.-++.|+.|+|++|+++.. +.+..++.|+.|||++|.+. .+|.+....+ .|
T Consensus 161 ~~Wn~L~~a~fsyN~L~~-mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVL-MDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KL 234 (1096)
T ss_pred hhhhhHhhhhcchhhHHh-HHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hh
Confidence 222367777777777652 222 234567788888888888754 37778888888888888877 4555543333 38
Q ss_pred CeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcce
Q 001554 456 REMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFS 515 (1055)
Q Consensus 456 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~ 515 (1055)
+.|.+++|.++.. ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+.
T Consensus 235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888888887754 456778888888888887777666666677777777777777664
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.00 E-value=1.4e-07 Score=106.51 Aligned_cols=128 Identities=27% Similarity=0.297 Sum_probs=89.9
Q ss_pred CCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCccc-ccCcccEEE
Q 001554 307 SSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFA-SSNKVISLK 385 (1055)
Q Consensus 307 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~ 385 (1055)
.-.|...+.++|.+. .+..++.-++.|+.|+|++|+++... .+..+++|++|||++|.+. .+|.+- ..+.|..|.
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence 345666777788876 45567788899999999999997543 7888999999999999987 344432 233688888
Q ss_pred cccccCccccCcccccCCCCccEEEccCccccccc-ccccccCCCccEEEccCcccc
Q 001554 386 FAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGII-PKSLYTKQSIESLLLGQNKFH 441 (1055)
Q Consensus 386 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 441 (1055)
+++|.++.-.. +.++.+|+.||+++|-+.+-- -..+..+..|+.|+|.+|.+.
T Consensus 239 lrnN~l~tL~g---ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTLRG---IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhhhh---HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88887663221 356777888888888776431 123445666777777777764
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=9.9e-07 Score=88.56 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=18.6
Q ss_pred CCCCCCEEEccCCcCCCCC----cccccCCCCCCEEEeecCCCC
Q 001554 330 NLALLEDLELSDCNFFGSI----PSSFGNLTELINIDFSRNNFS 369 (1055)
Q Consensus 330 ~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~ 369 (1055)
.+.+|+.|||.+|-++..- ..++...+.|+.|.+..|-++
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 3455555555555554211 122333344555555555444
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=2e-06 Score=87.54 Aligned_cols=117 Identities=30% Similarity=0.283 Sum_probs=57.1
Q ss_pred ChhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCC-CchhhcCCCCCcEEeCCCCcCCCC
Q 001554 149 PLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGAD-WGPILSILSNLRILSLPDCHVAGP 227 (1055)
Q Consensus 149 p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~l~~l~~L~~L~L~~~~l~~~ 227 (1055)
+-.+..+..++.|-+.++.|.+ .......-..++.+++|||.+|.|++-. ....+.++|+|++|+|+.|.+...
T Consensus 38 ~~~v~s~ra~ellvln~~~id~-----~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGSIIDN-----EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred eeeeccccchhhheecCCCCCc-----chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 3334444445555555544422 1122233345667777777777776422 133445667777777777666654
Q ss_pred CcccccCCCCCCEEECCCCCCCCCc-chhccCCCCCcEEEccCC
Q 001554 228 IHSSLSKLQLLTHLNLDGNDLSSEV-PDFLTNFSSLQYLHLSLC 270 (1055)
Q Consensus 228 ~~~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n 270 (1055)
|...-..+.+|++|-|.+..+.-.- -..+..++.+++|+++.|
T Consensus 113 I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 113 IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 3221134445555555554443211 122333444445544444
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=2.3e-06 Score=87.20 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=33.6
Q ss_pred cCcCeeeccCccccCCC-CccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCccee
Q 001554 453 LSLREMDFSQNKLQGLV-PESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSF 516 (1055)
Q Consensus 453 ~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 516 (1055)
+++..+.+..|.+.... -+....++.+..|.|+.+++......+.+.++++|..|.++++.+.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 44555555555443221 12333445555666666666555455555666666666666665553
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.2e-05 Score=58.99 Aligned_cols=36 Identities=42% Similarity=0.653 Sum_probs=18.7
Q ss_pred CCCEEECCCCccccccCccccCcCCCCeEeCCCCcCc
Q 001554 890 ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLS 926 (1055)
Q Consensus 890 ~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~ls 926 (1055)
+|++|++++|+|+ .+|..|++|++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34545555555555555555555
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.78 E-value=1.7e-06 Score=92.47 Aligned_cols=183 Identities=20% Similarity=0.167 Sum_probs=103.2
Q ss_pred CCCCeeeCCCCCCCCC-CCCccCCCCCCCCEEeCCCCC-CCCCCChhcc-cCCCCcEEEecCCCCCCchhhccccHHHHh
Q 001554 107 QRLQHLNLADNSLYSS-PFPSGFDRLFSLTHLNLSYSG-FSGHIPLEIS-SLKMLVSLDLSASGLVAPIQLRRANLEKLV 183 (1055)
Q Consensus 107 ~~L~~L~Ls~n~~~~~-~lp~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~-~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l 183 (1055)
..|+.|.++++.-.+. ++-..-.+++++++|++.++. +++..-.+++ .|++|++|++-.+. .++...+....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-----~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-----SITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-----hhHHHHHHHHH
Confidence 3677777877754332 233445678888888888874 3333333343 58888888887742 23334455567
Q ss_pred cCCCCCceeeCCCcc-cCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccc----cCCCCCCEEECCCCCC-CCCcchhc-
Q 001554 184 KNLTNLEELYLGGID-ISGADWGPILSILSNLRILSLPDCHVAGPIHSSL----SKLQLLTHLNLDGNDL-SSEVPDFL- 256 (1055)
Q Consensus 184 ~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l----~~l~~L~~L~Ls~n~~-~~~~p~~l- 256 (1055)
.++++|++|+++|+. +++........+++.++.+.+++|.-.+. +.+ ..+..+..+++..+.. +...-..+
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 788889999888873 55555455556777777777776632221 111 2334455555555432 22111111
Q ss_pred cCCCCCcEEEccCCcCCCc-cCccc-CCCCCCcEEEccCCCC
Q 001554 257 TNFSSLQYLHLSLCGLYGR-VPEKI-FLMPSLCFLDVSSNSN 296 (1055)
Q Consensus 257 ~~l~~L~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~Ls~n~~ 296 (1055)
..+..|++|+.+++.-.+. .-.++ .++.+|+.|-++.++.
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence 2355677777766644221 11222 3466777777776653
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.77 E-value=9.1e-07 Score=94.45 Aligned_cols=291 Identities=20% Similarity=0.156 Sum_probs=173.3
Q ss_pred ceeEecC---CCCcEEEEEcCCCccccccCCCCCccCCCCCCeeeCCCCCC-CCCCCCccCCCCCCCCEEeCCCC-CCCC
Q 001554 72 DGVTCDP---RTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSL-YSSPFPSGFDRLFSLTHLNLSYS-GFSG 146 (1055)
Q Consensus 72 ~gv~C~~---~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~-~~~~lp~~l~~l~~L~~L~Ls~n-~~~~ 146 (1055)
.||.|.. -.|++++|.|.|..=.|.-+.-....++++++.|++.++.- +...+-+.-..+++|++|+|..| .++.
T Consensus 126 g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 126 GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred CcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 4566642 23788888888865433222111345788999999988853 22211122347899999999995 4554
Q ss_pred CCChhc-ccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCC-CchhhcCCCCCcEEeCCCCcC
Q 001554 147 HIPLEI-SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGAD-WGPILSILSNLRILSLPDCHV 224 (1055)
Q Consensus 147 ~~p~~l-~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~l~~l~~L~~L~L~~~~l 224 (1055)
.....+ ..+++|++|+++++.- +...++.....+++.++.+.+.|+.=.+.. +...-+.+..+.++++..|..
T Consensus 206 ~~Lk~la~gC~kL~~lNlSwc~q-----i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 206 VSLKYLAEGCRKLKYLNLSWCPQ-----ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred HHHHHHHHhhhhHHHhhhccCch-----hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 444434 4699999999999742 233556677888888888887775322211 111124456677777777753
Q ss_pred CCCCc--ccccCCCCCCEEECCCCCCCCCcc-hhc-cCCCCCcEEEccCCcC-CCccCccc-CCCCCCcEEEccCCCCCC
Q 001554 225 AGPIH--SSLSKLQLLTHLNLDGNDLSSEVP-DFL-TNFSSLQYLHLSLCGL-YGRVPEKI-FLMPSLCFLDVSSNSNLT 298 (1055)
Q Consensus 225 ~~~~~--~~l~~l~~L~~L~Ls~n~~~~~~p-~~l-~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~~~~ 298 (1055)
..... ..-..+..|+.|+.+++...+..+ ..+ .+..+|+.|-++.|+- +..-...+ .+++.|+.+++..+....
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 33211 112357888999998876533222 223 3578999999998863 32222223 247888888888776544
Q ss_pred CC-CCCCC-CCCCCcEEEccCCcCCCCC-----cccccCCCCCCEEEccCCcCC-CCCcccccCCCCCCEEEeecCC
Q 001554 299 GS-LPEFP-PSSQLKVIELSETRFSGKL-----PDSINNLALLEDLELSDCNFF-GSIPSSFGNLTELINIDFSRNN 367 (1055)
Q Consensus 299 ~~-~~~~~-~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~ 367 (1055)
.. +..+. .++.|+.+.++.+...... ...-..+..|+.+.|+++... ...-..+..+++|+.+++..++
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 33 22232 3677777777766443211 112234566777777777643 2223345566677777666654
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=8.4e-07 Score=79.93 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=76.2
Q ss_pred CCEEeccCCCCCCCCCccc---cCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEE
Q 001554 673 LQVLDLSDNHLTGSIPSCL---VSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLD 749 (1055)
Q Consensus 673 L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 749 (1055)
+..++|+.|.+- .++... .....|+..+|++|.+....+..-...+..+.|+|++|.|+ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 445555555553 333322 22234555666666666433333334456677777777777 5666677777777777
Q ss_pred CCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChH
Q 001554 750 VGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPAR 812 (1055)
Q Consensus 750 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~ 812 (1055)
++.|.+. ..|..+..+.++-.|+..+|.+. .++.. +-.-+..-..++.++++.+.++..
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d--l~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD--LFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH--HhccccHHHHHhcCCcccccCccc
Confidence 7777775 45555656677777777776653 22211 111222334566888888888743
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2.2e-05 Score=57.63 Aligned_cols=38 Identities=42% Similarity=0.622 Sum_probs=32.9
Q ss_pred CCCCeEeCCCCcCcccCcccccCCCCCCeEecCCCcCcc
Q 001554 913 KELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVG 951 (1055)
Q Consensus 913 ~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~L~g 951 (1055)
++|++|++++|+|+ .+|..+++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 578889999999999999999873
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=1.1e-05 Score=96.86 Aligned_cols=107 Identities=20% Similarity=0.338 Sum_probs=72.9
Q ss_pred CCCceeeCCCcccCCCCCchhhc-CCCCCcEEeCCCCcCCCC-CcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcE
Q 001554 187 TNLEELYLGGIDISGADWGPILS-ILSNLRILSLPDCHVAGP-IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264 (1055)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 264 (1055)
.+|++|+++|...-...|+..++ .+|+|++|.+.+-.+... .-....++++|..||+|+.+++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56777777776666666776664 468888888877665442 223345778888888888877754 56777888888
Q ss_pred EEccCCcCCC-ccCcccCCCCCCcEEEccCCC
Q 001554 265 LHLSLCGLYG-RVPEKIFLMPSLCFLDVSSNS 295 (1055)
Q Consensus 265 L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~ 295 (1055)
|.+.+-.+.. ..-..++++++|++||+|...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 8877766643 223456778888888888553
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00034 Score=77.41 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=46.8
Q ss_pred ccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCC-cCccccCccccCCCCC
Q 001554 691 LVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKN-QLNGSFPFWLETLPQL 769 (1055)
Q Consensus 691 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L 769 (1055)
+..+..++.|++++|.++. +|. + -.+|++|+++++.--..+|+.+. .+|+.|++++| .+. .+|. .|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 3445778888888887764 452 2 23688888887443346666553 57888888877 443 3442 35
Q ss_pred cEEEccCCcC
Q 001554 770 RVLVLQSNNY 779 (1055)
Q Consensus 770 ~~L~L~~N~l 779 (1055)
+.|+++.|..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 5566655443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=4.1e-05 Score=92.08 Aligned_cols=150 Identities=24% Similarity=0.310 Sum_probs=103.1
Q ss_pred CCCCCEEeCCCCCC-CCCCChhcc-cCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhh
Q 001554 131 LFSLTHLNLSYSGF-SGHIPLEIS-SLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPIL 208 (1055)
Q Consensus 131 l~~L~~L~Ls~n~~-~~~~p~~l~-~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 208 (1055)
-.+|++||+++... ...=|..++ .|+.|+.|.+++-.+ ....+.+...++++|..||+++.+++.. ..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~------~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GI 191 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF------DNDDFSQLCASFPNLRSLDISGTNISNL---SGI 191 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee------cchhHHHHhhccCccceeecCCCCccCc---HHH
Confidence 36788888888543 333344555 478899998887433 2344667788889999999999888765 578
Q ss_pred cCCCCCcEEeCCCCcCCC-CCcccccCCCCCCEEECCCCCCCCCc--c----hhccCCCCCcEEEccCCcCCCccCcccC
Q 001554 209 SILSNLRILSLPDCHVAG-PIHSSLSKLQLLTHLNLDGNDLSSEV--P----DFLTNFSSLQYLHLSLCGLYGRVPEKIF 281 (1055)
Q Consensus 209 ~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 281 (1055)
+++++|++|.+.+=.+.. ..-..+.+|++|++||+|........ . +.-..+++|+.||.++..+.+.+-+.+-
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 889999999888777664 23345788999999999976644321 1 1123488999999998888766544432
Q ss_pred -CCCCCcEE
Q 001554 282 -LMPSLCFL 289 (1055)
Q Consensus 282 -~l~~L~~L 289 (1055)
.-++|+.+
T Consensus 272 ~sH~~L~~i 280 (699)
T KOG3665|consen 272 NSHPNLQQI 280 (699)
T ss_pred HhCccHhhh
Confidence 23444433
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00044 Score=76.56 Aligned_cols=56 Identities=14% Similarity=0.314 Sum_probs=28.7
Q ss_pred hhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccC-cCcccchhhhCCCCCCEEECcCC
Q 001554 498 FKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSC-KITEFPNFLRNQTNLFHLDLSNN 560 (1055)
Q Consensus 498 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~ip~~l~~l~~L~~L~Ls~N 560 (1055)
+..+.+++.|++++|.++... ...++|++|.+++| .++.+|..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 344566666666666555332 12234666666554 444555433 134555555555
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00026 Score=68.83 Aligned_cols=105 Identities=23% Similarity=0.270 Sum_probs=56.8
Q ss_pred CcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceee
Q 001554 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLK 533 (1055)
Q Consensus 454 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ 533 (1055)
+...+|+++|.+... ..|.+++.|.+|.+.+|+|+. |....-.-+++|+.|.+.+|.+....+......+|+|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 344555555555432 234555566666666666653 33344444555666666666555444444444556666666
Q ss_pred cccCcCcccch----hhhCCCCCCEEECcCCC
Q 001554 534 LSSCKITEFPN----FLRNQTNLFHLDLSNNR 561 (1055)
Q Consensus 534 L~~n~l~~ip~----~l~~l~~L~~L~Ls~N~ 561 (1055)
+-+|.++.-.. .+..+++|+.||.+.-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 66665554432 24566777777766543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.10 E-value=0.00068 Score=66.02 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred cccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCC--CCCCcCCc
Q 001554 451 SSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG--SNSNMFPK 528 (1055)
Q Consensus 451 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~ 528 (1055)
.++.|.+|.+.+|+|+..-|.--..+++|+.|.|.+|++......+.+..|++|++|.+-+|.++....- .....+|+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 3344555555555555444433334555666666666665444445566667777777777666532221 12345788
Q ss_pred cceeecccCcCc
Q 001554 529 IGTLKLSSCKIT 540 (1055)
Q Consensus 529 L~~L~L~~n~l~ 540 (1055)
|+.||++.-...
T Consensus 142 l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 142 LRTLDFQKVTRK 153 (233)
T ss_pred ceEeehhhhhHH
Confidence 888887765443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.70 E-value=0.0042 Score=58.62 Aligned_cols=83 Identities=18% Similarity=0.336 Sum_probs=29.1
Q ss_pred ccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCC
Q 001554 665 LSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTS 744 (1055)
Q Consensus 665 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 744 (1055)
..|..+++|+.+++.++ +...-..+|.++.+++.+.+.+ .+.......|..+++|+.+++..+ +...-...|.++ .
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 33444444555554443 3323333444444444444433 222223334444444444444433 332223334443 4
Q ss_pred CcEEECC
Q 001554 745 LEVLDVG 751 (1055)
Q Consensus 745 L~~L~Ls 751 (1055)
|+.+.+.
T Consensus 105 l~~i~~~ 111 (129)
T PF13306_consen 105 LKEINIP 111 (129)
T ss_dssp --EEE-T
T ss_pred ceEEEEC
Confidence 4444444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.53 E-value=0.0016 Score=66.50 Aligned_cols=60 Identities=25% Similarity=0.322 Sum_probs=29.4
Q ss_pred CCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCC--CCCCCCChhcccCCCCcEEEecCCCC
Q 001554 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYS--GFSGHIPLEISSLKMLVSLDLSASGL 168 (1055)
Q Consensus 106 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~L~~L~~L~Ls~n~~ 168 (1055)
+..|+.|++.+..++.. ..+-.|++|++|.+|.| .+.+.++.....+++|++|+++.|++
T Consensus 42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33444444444443322 23445556666666666 44444444444455555555555544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.00017 Score=73.31 Aligned_cols=80 Identities=29% Similarity=0.292 Sum_probs=44.5
Q ss_pred cCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcc---
Q 001554 154 SLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHS--- 230 (1055)
Q Consensus 154 ~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~--- 230 (1055)
+++.|++|.||-|+|.. .+-+..|++|++|+|..|.|.+......+.++++|+.|.|..|.-.+.-+.
T Consensus 39 kMp~lEVLsLSvNkIss---------L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS---------LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred hcccceeEEeecccccc---------chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 45555555555554422 122556677777777777776665555566666666666666655443321
Q ss_pred --cccCCCCCCEEE
Q 001554 231 --SLSKLQLLTHLN 242 (1055)
Q Consensus 231 --~l~~l~~L~~L~ 242 (1055)
.+.-|++|+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 233445555543
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.16 E-value=0.012 Score=55.53 Aligned_cols=60 Identities=22% Similarity=0.291 Sum_probs=22.5
Q ss_pred hhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEcc
Q 001554 207 ILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS 268 (1055)
Q Consensus 207 ~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~ 268 (1055)
.+.++++|+.+.+.. .+...-..+|.++++|+.+.+..+ +.......|..+++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344555555555543 233322334455555555555443 333333344444445555553
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.00062 Score=80.97 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCCCceeeCCCcc-cCCCCCchhhcCCCCCcEEeCCCCc
Q 001554 186 LTNLEELYLGGID-ISGADWGPILSILSNLRILSLPDCH 223 (1055)
Q Consensus 186 l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~~~ 223 (1055)
|++|++|.+.++. +++..+......+++|++|++++|.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4444444444333 3333333333344444444444443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.08 E-value=0.0022 Score=39.06 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=8.4
Q ss_pred CCEEECCCCccccccCcccc
Q 001554 891 LLVLNMSNNNFKGQIPATLG 910 (1055)
Q Consensus 891 L~~L~Ls~N~l~g~iP~~~~ 910 (1055)
|+.||||+|+|+ .||++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344444444444 4444433
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0047 Score=63.13 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=37.2
Q ss_pred CCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCC--cccccCcccccCCCCCcEEECCCCcCc
Q 001554 687 IPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN--HLAGSLPKSLSKCTSLEVLDVGKNQLN 756 (1055)
Q Consensus 687 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 756 (1055)
+.........|+.|.+.+..++.. ..|..+++|++|.++.| ++++.++.....+++|++|++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 555555555666666666655432 33445556666666666 445444444444555555555555554
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.96 E-value=0.0029 Score=38.59 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=13.4
Q ss_pred CCCeEeCCCCcCcccCcccccC
Q 001554 914 ELGSLDLSHNQLSGKIPEKLAT 935 (1055)
Q Consensus 914 ~L~~LdLs~N~lsg~ip~~l~~ 935 (1055)
+|+.||||+|+|+ .||++|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566777777666 66666554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.83 E-value=0.0012 Score=78.45 Aligned_cols=94 Identities=32% Similarity=0.323 Sum_probs=41.6
Q ss_pred HHHHhcCCCCCceeeCCCc-cc-C--CCCCchhhcCCCCCcEEeCCCCc-CCCCCccccc-CCCCCCEEECCCCC-CCCC
Q 001554 179 LEKLVKNLTNLEELYLGGI-DI-S--GADWGPILSILSNLRILSLPDCH-VAGPIHSSLS-KLQLLTHLNLDGND-LSSE 251 (1055)
Q Consensus 179 ~~~~l~~l~~L~~L~L~~n-~l-~--~~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~Ls~n~-~~~~ 251 (1055)
+......+++|++|+++++ .. . ..........+++|+.|+++++. ++...-..+. .+++|++|.+.++. ++..
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 3344555555555555542 11 1 10111223444555666665555 3332222222 25566666655444 3322
Q ss_pred cc-hhccCCCCCcEEEccCCcC
Q 001554 252 VP-DFLTNFSSLQYLHLSLCGL 272 (1055)
Q Consensus 252 ~p-~~l~~l~~L~~L~L~~n~l 272 (1055)
.- .....++.|++|++++|..
T Consensus 286 gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHHHHhcCcccEEeeecCcc
Confidence 11 1223355666666666654
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.00037 Score=70.83 Aligned_cols=82 Identities=29% Similarity=0.361 Sum_probs=38.5
Q ss_pred ccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccC-ccccCCCCCcEEEcc
Q 001554 697 LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFP-FWLETLPQLRVLVLQ 775 (1055)
Q Consensus 697 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~ 775 (1055)
.+.|++.++.++++ ....+++.|+.|.|+-|+|+..-| +..|+.|++|+|..|.|...-. ..+.++|+|++|.|.
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 33444444444432 222344555555555555553222 4455555555555555542211 124455555555555
Q ss_pred CCcCccc
Q 001554 776 SNNYDGS 782 (1055)
Q Consensus 776 ~N~l~~~ 782 (1055)
.|...|.
T Consensus 97 ENPCc~~ 103 (388)
T KOG2123|consen 97 ENPCCGE 103 (388)
T ss_pred cCCcccc
Confidence 5555443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.55 E-value=0.002 Score=74.46 Aligned_cols=134 Identities=26% Similarity=0.313 Sum_probs=66.8
Q ss_pred CCcEEeCCCCcCCCC----CcccccCCCCCCEEECCCCCCCC----Ccchhcc----CCCCCcEEEccCCcCCCcc----
Q 001554 213 NLRILSLPDCHVAGP----IHSSLSKLQLLTHLNLDGNDLSS----EVPDFLT----NFSSLQYLHLSLCGLYGRV---- 276 (1055)
Q Consensus 213 ~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~----~~p~~l~----~l~~L~~L~L~~n~l~~~~---- 276 (1055)
.+++|++..|.++.. +.+.+.....++.+|++.|.+.. .++..+. ...++++|++++|.++...
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 344455555555442 33445556666666666666531 1122222 3456666666666654211
Q ss_pred CcccCCCCC-CcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC----CcccccCC-CCCCEEEccCCcCCCCC--
Q 001554 277 PEKIFLMPS-LCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGK----LPDSINNL-ALLEDLELSDCNFFGSI-- 348 (1055)
Q Consensus 277 p~~l~~l~~-L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~l~~~~-- 348 (1055)
...+...+. ++.|++. .|.+.+. ....+..+ ..+++++++.|.++..-
T Consensus 225 ~~~l~~~~~~~~el~l~------------------------~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLA------------------------SNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred HHHHhccchhhHHHHHH------------------------hcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence 111222233 3344444 4444322 12223334 56677777777766433
Q ss_pred --cccccCCCCCCEEEeecCCCCC
Q 001554 349 --PSSFGNLTELINIDFSRNNFSG 370 (1055)
Q Consensus 349 --p~~l~~l~~L~~L~Ls~n~l~~ 370 (1055)
...+..++.++++.+++|.+..
T Consensus 281 ~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 281 DLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhhhHHHHHhhcccCcccc
Confidence 2334456677777777777653
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.97 E-value=0.0037 Score=72.29 Aligned_cols=187 Identities=25% Similarity=0.259 Sum_probs=86.6
Q ss_pred CCeeeCCCCCCCCCC---CCccCCCCCCCCEEeCCCCCCCCCCChhcc----cC-CCCcEEEecCCCCCCchhhccccHH
Q 001554 109 LQHLNLADNSLYSSP---FPSGFDRLFSLTHLNLSYSGFSGHIPLEIS----SL-KMLVSLDLSASGLVAPIQLRRANLE 180 (1055)
Q Consensus 109 L~~L~Ls~n~~~~~~---lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~----~L-~~L~~L~Ls~n~~~~~~~~~~~~~~ 180 (1055)
++.|+|.+|.+.... +-..+.....|..|++++|.+.+.--..+. .. ..|++|++..|.++. .....+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~---~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS---EGAAPLA 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc---cchHHHH
Confidence 444555555443321 112334445555555555555422221111 11 234445554443322 1112233
Q ss_pred HHhcCCCCCceeeCCCcccCCCC---Cchhhc----CCCCCcEEeCCCCcCCCC----CcccccCCCC-CCEEECCCCCC
Q 001554 181 KLVKNLTNLEELYLGGIDISGAD---WGPILS----ILSNLRILSLPDCHVAGP----IHSSLSKLQL-LTHLNLDGNDL 248 (1055)
Q Consensus 181 ~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~----~l~~L~~L~L~~~~l~~~----~~~~l~~l~~-L~~L~Ls~n~~ 248 (1055)
+.+.....+++++++.|.+.... .+..+. ...++++|.+.+|.++.. +...+...+. +..|++..|.+
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 34444555555555555443111 111222 345566666666655531 1122344444 55567776665
Q ss_pred CCCc----chhccCC-CCCcEEEccCCcCCCcc----CcccCCCCCCcEEEccCCCCCC
Q 001554 249 SSEV----PDFLTNF-SSLQYLHLSLCGLYGRV----PEKIFLMPSLCFLDVSSNSNLT 298 (1055)
Q Consensus 249 ~~~~----p~~l~~l-~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~~~~ 298 (1055)
.... ...+..+ ..+++++++.|.++..- ...+..++.++.+.++.|++..
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 5331 2223334 45677777777775443 3334456677777777776543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.07 E-value=0.18 Score=28.39 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=5.9
Q ss_pred ccceeecccCcCcccc
Q 001554 528 KIGTLKLSSCKITEFP 543 (1055)
Q Consensus 528 ~L~~L~L~~n~l~~ip 543 (1055)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555544443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.90 E-value=0.25 Score=27.87 Aligned_cols=10 Identities=60% Similarity=0.863 Sum_probs=3.1
Q ss_pred CCeEeCCCCc
Q 001554 915 LGSLDLSHNQ 924 (1055)
Q Consensus 915 L~~LdLs~N~ 924 (1055)
|+.|||++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.51 E-value=0.018 Score=57.47 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=69.7
Q ss_pred CCcEEEEEcCCCccccccCCCCCccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCc
Q 001554 80 TGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV 159 (1055)
Q Consensus 80 ~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~ 159 (1055)
..||+.||++.+.+... .. .+..++.|..||++.|.+.- +|+.++.+..++++++..|..+ ..|.+.+++++++
T Consensus 41 ~kr~tvld~~s~r~vn~-~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-GK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred cceeeeehhhhhHHHhh-cc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 46899999999887522 22 56678899999999988865 7899999999999999999887 8899999999999
Q ss_pred EEEecCCCC
Q 001554 160 SLDLSASGL 168 (1055)
Q Consensus 160 ~L~Ls~n~~ 168 (1055)
++++-.+.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 999988754
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.97 E-value=0.02 Score=57.05 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=69.4
Q ss_pred cccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEe
Q 001554 864 LTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLK 943 (1055)
Q Consensus 864 l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ 943 (1055)
....+.||+|.|++. ..-..+..++.++.||+|.|++. -.|..++.+..+..+++..|.++ ..|.++..++.+..++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 345678999999887 34456677788889999999988 78889999999999999888887 6788899999999998
Q ss_pred cCCCcCc
Q 001554 944 LSQNLLV 950 (1055)
Q Consensus 944 ls~N~L~ 950 (1055)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888754
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.77 E-value=0.12 Score=32.14 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=8.9
Q ss_pred CCCCeEeCCCCcCcccCcc
Q 001554 913 KELGSLDLSHNQLSGKIPE 931 (1055)
Q Consensus 913 ~~L~~LdLs~N~lsg~ip~ 931 (1055)
++|++|||++|+|++..+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4555555555555554433
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.71 E-value=0.72 Score=29.27 Aligned_cols=14 Identities=64% Similarity=0.769 Sum_probs=7.5
Q ss_pred CCCCeEeCCCCcCc
Q 001554 913 KELGSLDLSHNQLS 926 (1055)
Q Consensus 913 ~~L~~LdLs~N~ls 926 (1055)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.71 E-value=0.72 Score=29.27 Aligned_cols=14 Identities=64% Similarity=0.769 Sum_probs=7.5
Q ss_pred CCCCeEeCCCCcCc
Q 001554 913 KELGSLDLSHNQLS 926 (1055)
Q Consensus 913 ~~L~~LdLs~N~ls 926 (1055)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.55 E-value=0.29 Score=30.47 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=10.1
Q ss_pred CCCCEEECCCCccccccCcc
Q 001554 889 DALLVLNMSNNNFKGQIPAT 908 (1055)
Q Consensus 889 ~~L~~L~Ls~N~l~g~iP~~ 908 (1055)
++|+.|||++|+|++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666666544433
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.99 E-value=0.39 Score=47.50 Aligned_cols=80 Identities=25% Similarity=0.347 Sum_probs=43.7
Q ss_pred CCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceee-cCCCCCCcCCccceeecccC-cCcccc-hhhhCCCCCCEE
Q 001554 479 LNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFN-VSGSNSNMFPKIGTLKLSSC-KITEFP-NFLRNQTNLFHL 555 (1055)
Q Consensus 479 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~L~~n-~l~~ip-~~l~~l~~L~~L 555 (1055)
++.+|-++..|.. .-.+.+.++++++.|.+.+|+-.+. .-.......++|+.|++++| .|++.- ..+..+++|+.|
T Consensus 103 IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHH-HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3444444444432 2223444455555555555532211 11111235678888888888 677543 567788888888
Q ss_pred ECcC
Q 001554 556 DLSN 559 (1055)
Q Consensus 556 ~Ls~ 559 (1055)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7765
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.22 E-value=2.4 Score=26.84 Aligned_cols=16 Identities=44% Similarity=0.468 Sum_probs=9.3
Q ss_pred CCCCEEECCCCCCCCC
Q 001554 236 QLLTHLNLDGNDLSSE 251 (1055)
Q Consensus 236 ~~L~~L~Ls~n~~~~~ 251 (1055)
++|++|+|++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666544
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.22 E-value=2.4 Score=26.84 Aligned_cols=16 Identities=44% Similarity=0.468 Sum_probs=9.3
Q ss_pred CCCCEEECCCCCCCCC
Q 001554 236 QLLTHLNLDGNDLSSE 251 (1055)
Q Consensus 236 ~~L~~L~Ls~n~~~~~ 251 (1055)
++|++|+|++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666544
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.79 E-value=2.3 Score=27.06 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=10.6
Q ss_pred cCCCCeEeCCCCcCc
Q 001554 912 LKELGSLDLSHNQLS 926 (1055)
Q Consensus 912 L~~L~~LdLs~N~ls 926 (1055)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 456777777777774
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.06 E-value=0.64 Score=46.04 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=12.3
Q ss_pred EEeCCCCCCCCCCChhcccCCCCcEEEecCC
Q 001554 136 HLNLSYSGFSGHIPLEISSLKMLVSLDLSAS 166 (1055)
Q Consensus 136 ~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n 166 (1055)
.+|-+++.+..+--..+.+++.++.|.+.++
T Consensus 105 aVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 105 AVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3444444333333333344444444444433
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.86 E-value=20 Score=40.58 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=22.0
Q ss_pred ccceeecccCcCcccc----hhhhCCCCCCEEECcCCCCC
Q 001554 528 KIGTLKLSSCKITEFP----NFLRNQTNLFHLDLSNNRIK 563 (1055)
Q Consensus 528 ~L~~L~L~~n~l~~ip----~~l~~l~~L~~L~Ls~N~l~ 563 (1055)
-+..+.++.|.+..-+ ..+..-+.+..||+++|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 3556666666665322 23455567778888887664
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.62 E-value=5.9 Score=25.69 Aligned_cols=14 Identities=50% Similarity=0.681 Sum_probs=9.4
Q ss_pred CCCCeEeCCCCcCc
Q 001554 913 KELGSLDLSHNQLS 926 (1055)
Q Consensus 913 ~~L~~LdLs~N~ls 926 (1055)
+.|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777764
No 91
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=57.94 E-value=16 Score=27.75 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=16.0
Q ss_pred CCCCchhHHHHHHHHHHHHHH
Q 001554 2 GNPLPFWSWKIWFSSFFFGFS 22 (1055)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (1055)
-||||.||-..|+.++++.+.
T Consensus 17 dnplP~ww~~~f~~tivfa~~ 37 (51)
T PF14715_consen 17 DNPLPRWWLWLFYGTIVFAVG 37 (51)
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 489999998888777666443
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.21 E-value=43 Score=37.98 Aligned_cols=20 Identities=45% Similarity=0.425 Sum_probs=12.2
Q ss_pred CCCEEECcCCCCCCcccccc
Q 001554 551 NLFHLDLSNNRIKGEIPNWT 570 (1055)
Q Consensus 551 ~L~~L~Ls~N~l~~~~p~~~ 570 (1055)
.+.++|++.|.....+|...
T Consensus 215 ~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred cccccccccCCCCccchhHH
Confidence 45666666666666666543
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=55.61 E-value=7.7 Score=53.39 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=26.6
Q ss_pred ccccCCCCcEEeccCCCCccCCChHHHhhhhhh
Q 001554 788 TANAFALLQIIDISSNNFSGNLPARWFQSWRGM 820 (1055)
Q Consensus 788 ~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~ 820 (1055)
.+..+++|+.|+|++|+|.|+|...||..|-..
T Consensus 14 ~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~ 46 (2740)
T TIGR00864 14 ICANLCNLSEIDLSGNPFECDCGLARLPRWAEE 46 (2740)
T ss_pred HhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence 345567788888999999999999999888543
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=55.48 E-value=6.7 Score=24.93 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=11.6
Q ss_pred CccceeecccCcCcccch
Q 001554 527 PKIGTLKLSSCKITEFPN 544 (1055)
Q Consensus 527 ~~L~~L~L~~n~l~~ip~ 544 (1055)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356666666666666665
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=53.14 E-value=13 Score=33.98 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=3.2
Q ss_pred hhhhhhHH
Q 001554 1017 GTGMVIGI 1024 (1055)
Q Consensus 1017 ~~~~~~~~ 1024 (1055)
.+|+++|+
T Consensus 70 i~gv~aGv 77 (122)
T PF01102_consen 70 IFGVMAGV 77 (122)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33444433
No 96
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=38.63 E-value=29 Score=29.17 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=13.0
Q ss_pred hhhhhhhHHHHHHHHHHH-HHhhcccccccc
Q 001554 1016 DGTGMVIGITLGVVVSNE-IIKKKGKVHRSI 1045 (1055)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 1045 (1055)
+.+.+++|+.+..+..+. ..++++|.+|.+
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRSRRPI 65 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 344455555343333333 334444444444
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.25 E-value=17 Score=41.99 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=16.5
Q ss_pred CCCceeeCCCcccCCCCC------chhhcCCCCCcEEe
Q 001554 187 TNLEELYLGGIDISGADW------GPILSILSNLRILS 218 (1055)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~------~~~l~~l~~L~~L~ 218 (1055)
..|++|-+.||.+..... ...-..+|+|..||
T Consensus 270 l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred CCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 346677777776553221 11113566666665
No 98
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=33.34 E-value=40 Score=36.56 Aligned_cols=22 Identities=32% Similarity=0.848 Sum_probs=17.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHH
Q 001554 2 GNPLPFWSWKIWFSSFFFGFSL 23 (1055)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (1055)
-||||-||.+.|+.+++|.+.-
T Consensus 23 ~n~~P~ww~~~f~~~i~~~~~y 44 (285)
T TIGR00782 23 DNPLPRWWLWTFYATIVWGFGY 44 (285)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999998887775433
No 99
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=32.63 E-value=56 Score=23.88 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHhcC
Q 001554 32 CLEDQKLLLLEFKRGL 47 (1055)
Q Consensus 32 ~~~~~~~aLl~~k~~~ 47 (1055)
...+||+|||+-+.-+
T Consensus 28 afrqdrdallear~kl 43 (54)
T PF13260_consen 28 AFRQDRDALLEARNKL 43 (54)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 3458999999998766
No 100
>PF15179 Myc_target_1: Myc target protein 1
Probab=31.74 E-value=48 Score=32.23 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=14.1
Q ss_pred cceeehhhhhhhhhhhhhHHHHHHHHH
Q 001554 1005 WEFFWIGFGFGDGTGMVIGITLGVVVS 1031 (1055)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1055)
|.-+.+++.+.+.+|+++|+++.....
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~~Llt 44 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIWALLT 44 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433344555555556666666544443
No 101
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=30.14 E-value=11 Score=35.54 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=6.3
Q ss_pred hhhhhhhhhhhhhH
Q 001554 1010 IGFGFGDGTGMVIG 1023 (1055)
Q Consensus 1010 ~~~~~~~~~~~~~~ 1023 (1055)
+|+++|+|..++++
T Consensus 52 IGvVVGVGg~ill~ 65 (154)
T PF04478_consen 52 IGVVVGVGGPILLG 65 (154)
T ss_pred EEEEecccHHHHHH
Confidence 44444444444444
No 102
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=29.92 E-value=66 Score=29.00 Aligned_cols=17 Identities=35% Similarity=0.974 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHHHHHH
Q 001554 3 NPLPFWSWKIWFSSFFF 19 (1055)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (1055)
-++|||-|...+..+.+
T Consensus 63 ~slPfW~wa~ifllPYL 79 (128)
T PF15190_consen 63 LSLPFWMWALIFLLPYL 79 (128)
T ss_pred ccCcHHHHHHHHHHHHH
Confidence 37999999888777665
No 103
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=27.45 E-value=59 Score=32.43 Aligned_cols=6 Identities=0% Similarity=0.036 Sum_probs=2.4
Q ss_pred EecCCC
Q 001554 942 LKLSQN 947 (1055)
Q Consensus 942 l~ls~N 947 (1055)
.|+.++
T Consensus 9 ~d~~g~ 14 (179)
T PF13908_consen 9 YDVMGQ 14 (179)
T ss_pred ecCCCC
Confidence 344433
No 104
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.29 E-value=38 Score=39.28 Aligned_cols=65 Identities=28% Similarity=0.215 Sum_probs=35.2
Q ss_pred cCCccceeecccCcCcccc---hhhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEeccCcccc
Q 001554 525 MFPKIGTLKLSSCKITEFP---NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLE 589 (1055)
Q Consensus 525 ~~~~L~~L~L~~n~l~~ip---~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~ 589 (1055)
.+|.+..+.+++|++..+. ..-...++|+.|+|++|...-.-..+++..+...|++|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 4556666666666655443 3335567788888888833222223333333334555555555553
No 105
>PRK10132 hypothetical protein; Provisional
Probab=25.37 E-value=42 Score=30.16 Aligned_cols=18 Identities=33% Similarity=0.748 Sum_probs=13.2
Q ss_pred ehhhhhhhhhhhhhHHHH
Q 001554 1009 WIGFGFGDGTGMVIGITL 1026 (1055)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~ 1026 (1055)
|.++|++.|+|+++|+++
T Consensus 87 w~svgiaagvG~llG~Ll 104 (108)
T PRK10132 87 WCSVGTAAAVGIFIGALL 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777777888887764
No 106
>PRK10404 hypothetical protein; Provisional
Probab=24.53 E-value=45 Score=29.61 Aligned_cols=18 Identities=44% Similarity=1.130 Sum_probs=12.8
Q ss_pred ehhhhhhhhhhhhhHHHH
Q 001554 1009 WIGFGFGDGTGMVIGITL 1026 (1055)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~ 1026 (1055)
|-++|++.|+|+++|+++
T Consensus 81 w~avGiaagvGlllG~Ll 98 (101)
T PRK10404 81 WQGIGVGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777788877764
No 107
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=23.37 E-value=56 Score=20.55 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=6.4
Q ss_pred CCCcEEEccCCC
Q 001554 284 PSLCFLDVSSNS 295 (1055)
Q Consensus 284 ~~L~~L~Ls~n~ 295 (1055)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 108
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.05 E-value=74 Score=29.29 Aligned_cols=16 Identities=50% Similarity=0.837 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhhhHHHH
Q 001554 1010 IGFGFGDGTGMVIGITL 1026 (1055)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~ 1026 (1055)
.++.+|+.+|++ |+++
T Consensus 67 ~~Ii~gv~aGvI-g~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVI-GIIL 82 (122)
T ss_dssp HHHHHHHHHHHH-HHHH
T ss_pred eehhHHHHHHHH-HHHH
Confidence 345555555553 4443
No 109
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.34 E-value=67 Score=28.28 Aligned_cols=19 Identities=32% Similarity=0.928 Sum_probs=14.1
Q ss_pred ehhhhhhhhhhhhhHHHHH
Q 001554 1009 WIGFGFGDGTGMVIGITLG 1027 (1055)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~ 1027 (1055)
|-+||++.++|+++|+++.
T Consensus 84 Wq~VGvaAaVGlllGlLls 102 (104)
T COG4575 84 WQGVGVAAAVGLLLGLLLS 102 (104)
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 5677877788888887653
No 110
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.14 E-value=64 Score=26.01 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=5.2
Q ss_pred hhhhhhHHHHHH
Q 001554 1017 GTGMVIGITLGV 1028 (1055)
Q Consensus 1017 ~~~~~~~~~~~~ 1028 (1055)
++|+++|.++.+
T Consensus 29 ~~G~llg~l~~~ 40 (68)
T PF06305_consen 29 LLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
Done!