Query 001554
Match_columns 1055
No_of_seqs 643 out of 6017
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 15:52:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001554.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_854-858//hhsearch_pdb/001554hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 790.6 50.6 715 28-986 5-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 608.4 42.4 617 207-976 95-719 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 486.6 53.0 246 651-962 385-634 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 483.7 48.4 234 696-977 382-626 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 449.8 44.1 272 652-985 319-591 (844)
6 4eco_A Uncharacterized protein 1.0 1 1 445.1 20.7 86 31-119 26-117 (636)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 444.5 42.0 214 670-955 349-565 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 442.0 43.9 532 108-819 34-573 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 434.0 42.3 210 670-955 349-563 (606)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 433.4 40.2 146 667-819 422-573 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=790.62 Aligned_cols=715 Identities=33% Similarity=0.461 Sum_probs=442.3
Q ss_pred HCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCC---CCCCCCCC
Q ss_conf 179998887999999770498899998765369998999986521048519999299998599865455---68988764
Q 001554 28 VSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGG---INGSSSLF 104 (1055)
Q Consensus 28 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~l~~W~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~---~~~~~~l~ 104 (1055)
+...+.++|++||++||+++. ||. .+++|+.++|||+|+||+|+ ++||+.|+|++..+.|. +++ ++.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~-~~~-----~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~--~l~ 74 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP-DKN-----LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS--SLL 74 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS-CTT-----SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--HTT
T ss_pred CCCCCCHHHHHHHHHHHHHCC-CCC-----CCCCCCCCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCH--HHH
T ss_conf 656687899999999996678-962-----14687899987688413878--99278987789986775576696--573
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH--HCCCCCCCCEEEECCCCCCCCHHHCCCCHHHH
Q ss_conf 7877884438999999999994577999999884899999888871--00068898689904799998211013228898
Q 001554 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPL--EISSLKMLVSLDLSASGLVAPIQLRRANLEKL 182 (1055)
Q Consensus 105 ~l~~L~~L~Ls~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~ 182 (1055)
++++|+.++++.+.+.. +|..++++++|++|+|++|.+.+.+|. .++++++|++|++++|.+
T Consensus 75 ~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-------------- 138 (768)
T 3rgz_A 75 SLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-------------- 138 (768)
T ss_dssp TCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE--------------
T ss_pred CCCCCCCCCCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC--------------
T ss_conf 16802246786888678--70332457889989898985787078967872788999898968826--------------
Q ss_pred HCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCHH---CCC
Q ss_conf 60799886356788435899973000179987599679985899884222-58999888879899999983011---059
Q 001554 183 VKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSL-SKLQLLTHLNLDGNDLSSEVPDF---LTN 258 (1055)
Q Consensus 183 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~---l~~ 258 (1055)
.+..+..+ .++++|++|++++|.+.+..+.. +.+
T Consensus 139 ------------------------------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 139 ------------------------------------------DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp ------------------------------------------ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred ------------------------------------------CCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCC
T ss_conf ------------------------------------------77479778563889998989798358858715566435
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99996998447869876671237999976998448999888999999999882887468747887961122899988897
Q 001554 259 FSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLE 338 (1055)
Q Consensus 259 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 338 (1055)
+++|++|++++|.+.+..+. ..+++|++|+++ +|.+.+.+|. +..+++|++|+
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls------------------------~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDV--SRCVNLEFLDVS------------------------SNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp CTTCCEEECCSSEEESCCBC--TTCTTCCEEECC------------------------SSCCCSCCCB-CTTCCSCCEEE
T ss_pred CCCCCEEECCCCCCCCCCCC--CCCCCCCEEECC------------------------CCCCCCCCCC-CCCCCCCCEEE
T ss_conf 89889898978803465784--547868989892------------------------8827887711-12699999897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 42786788893100178999889921587788878313447634787265657666675323378886599833862555
Q 001554 339 LSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQG 418 (1055)
Q Consensus 339 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 418 (1055)
+++|.+.+.+|..+..+++|++|++++|.+.+.+|.. ...+|++|++++|.+.+.+|...+..+++|++|++++|.+++
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCC
T ss_conf 9488587816577744888898989888665716724-368789897917855772588888446868899896896778
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCHHH
Q ss_conf 56410036897459991684146974010013666757466568634688985212899-99989766888989553364
Q 001554 419 IIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIK-GLNVLRLSSNKFSGFITLEM 497 (1055)
Q Consensus 419 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~ 497 (1055)
.+|..+..+++|++|++++|.+.+.+|......+++|+.|++++|.+++.+|..+..++ +|+.|++++|.+.+.++...
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHH
T ss_conf 42367755877667789788525737978872488887884847843762309898632277199862787478767666
Q ss_pred HHCCCCCCEEECCCCCCEEECCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 3029999959787981101107998776776454411467675-435554379997799874898879623232224888
Q 001554 498 FKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT-EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG 576 (1055)
Q Consensus 498 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 576 (1055)
.. ..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 389 -~~-----------------------~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~---- 440 (768)
T 3rgz_A 389 -CQ-----------------------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS---- 440 (768)
T ss_dssp -TC-----------------------STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG----
T ss_pred -HH-----------------------CCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHC----
T ss_conf -53-----------------------32477618989778465424877756898798989588466854677744----
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCEEEEECCC
Q ss_conf 74088566764446689998644553019986688788889999975515406788555677830110245403898048
Q 001554 577 KLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLAS 656 (1055)
Q Consensus 577 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~l~~ 656 (1055)
++.++.+++++
T Consensus 441 ---------------------------------------------------------------------l~~L~~L~L~~ 451 (768)
T 3rgz_A 441 ---------------------------------------------------------------------LSKLRDLKLWL 451 (768)
T ss_dssp ---------------------------------------------------------------------CTTCCEEECCS
T ss_pred ---------------------------------------------------------------------CCCCCEEECCC
T ss_conf ---------------------------------------------------------------------99889898978
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 86767766001288999789656897789899431378866688665886864478555788774599578983655696
Q 001554 657 NNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLP 736 (1055)
Q Consensus 657 n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 736 (1055)
|.+.+.+|..+..+++|+.|++++|++++.+|..+.++++|+.|++++|++.+.+|..++.+++|++|++++|++++.+|
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 81547189788287773299901995137588788169989989753995189687688568999989897894337488
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-C---------------------CCCCCCCCCCCCCCC
Q ss_conf 100079999699877981754547002599999679825873-8---------------------654699864365898
Q 001554 737 KSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN-Y---------------------DGSIKDTQTANAFAL 794 (1055)
Q Consensus 737 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-~---------------------~~~~~~~~~~~~l~~ 794 (1055)
..+..+++|+.|++++|++++.+|.++.....+..+.+..+. + .+..+ .....+..
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 609 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS--EQLNRLST 609 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG--GGGGGGGG
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHCCCC
T ss_conf 7770889899898988846882795786042122320134542111134443222233222100135563--23200232
Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCC
Q ss_conf 86996568978557895777513410013554102356656534125432002067741472468876304552999537
Q 001554 795 LQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSN 874 (1055)
Q Consensus 795 L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~ 874 (1055)
+..++++.|.+.|.+| ..+..++.++.||+|+
T Consensus 610 ~~~~~l~~~~~~g~~~------------------------------------------------~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTS------------------------------------------------PTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TCCSCTTSCEEEEECC------------------------------------------------CSCSSSBCCCEEECCS
T ss_pred CCCCCCCCCEECCCCC------------------------------------------------HHHHCCCCCCEEECCC
T ss_conf 1100113310046274------------------------------------------------3340335665797858
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 84643676001498889789787873654468453386888857588870843474103299999947567994733699
Q 001554 875 NQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIP 954 (1055)
Q Consensus 875 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~Lsg~iP 954 (1055)
|+++|.+|.++++++.|+.||||+|+++|.||.+|+++++|+.||||+|+++|.||..+++++.|+.||+|+|+++|+||
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 80155587788414157878486880388789678477789989897880238688677578878978796881556089
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99976641234345688877999989888999
Q 001554 955 RGPQFATFTAASFEGNAGLCGFPLPKACQNAL 986 (1055)
Q Consensus 955 ~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~ 986 (1055)
.++||.+|...+|.|||+|||.|+. .|....
T Consensus 722 ~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 722 EMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCHHHCCCCHHHHCCCCHHCCCCCC-CCCCCC
T ss_conf 9601024897775698321088776-788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=608.42 Aligned_cols=617 Identities=30% Similarity=0.420 Sum_probs=406.5
Q ss_pred HHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCHHC-CCCCCCCEEECCCCCCCCCCCCC---C
Q ss_conf 001799875996799858998842--22589998888798999999830110-59999969984478698766712---3
Q 001554 207 ILSILSNLRILSLPDCHVAGPIHS--SLSKLQLLTHLNLDGNDLSSEVPDFL-TNFSSLQYLHLSLCGLYGRVPEK---I 280 (1055)
Q Consensus 207 ~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~---l 280 (1055)
.+..+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+.. +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred HHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHH
T ss_conf 32457889989898985787078967872788999898968826774797785638899989897983588587155664
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 79999769984489998889999999998828874687478879611228999888974278678889310017899988
Q 001554 281 FLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELIN 360 (1055)
Q Consensus 281 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 360 (1055)
.++++|++|+++ +|.+.+..+ +..+++|++|++++|.+.+.+|. ++++++|++
T Consensus 175 ~~l~~L~~L~Ls------------------------~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 175 DGCGELKHLAIS------------------------GNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227 (768)
T ss_dssp TCCTTCCEEECC------------------------SSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred CCCCCCCEEECC------------------------CCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCE
T ss_conf 358988989897------------------------880346578--45478689898928827887711-126999998
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 99215877888783134476347872656576666753233788865998338625555641003689745999168414
Q 001554 361 IDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF 440 (1055)
Q Consensus 361 L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 440 (1055)
|++++|.+++.+|.. +..+++|++|++++|.+.+.+|.. .+++|++|++++|.+
T Consensus 228 L~Ls~n~l~~~~~~~------------------------l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 228 LDISGNKLSGDFSRA------------------------ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281 (768)
T ss_dssp EECCSSCCCSCHHHH------------------------TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEE
T ss_pred EECCCCCCCCCCCHH------------------------HHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCC
T ss_conf 979488587816577------------------------744888898989888665716724--368789897917855
Q ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCEEECCC
Q ss_conf 69740100136667574665686346889852128999998976688898955336430299999597879811011079
Q 001554 441 HGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG 520 (1055)
Q Consensus 441 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 520 (1055)
.+.+|......+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.++...+..+++|+.|++++|.+.+
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~---- 357 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG---- 357 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE----
T ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC----
T ss_conf 7725888884468688998968967784236775587766778978852573797887248888788484784376----
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 987767764544114676754355543799-9779987489887962323222488874088566764446689998644
Q 001554 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQT-NLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLT 599 (1055)
Q Consensus 521 ~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 599 (1055)
.+|..+..++ +|+.|++++|.+.+.+|..+....
T Consensus 358 --------------------~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~------------------------- 392 (768)
T 3rgz_A 358 --------------------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP------------------------- 392 (768)
T ss_dssp --------------------CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST-------------------------
T ss_pred --------------------CCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCC-------------------------
T ss_conf --------------------23098986322771998627874787676665332-------------------------
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 55301998668878888999997551540678855567783011024540389804886767766001288999789656
Q 001554 600 STVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLS 679 (1055)
Q Consensus 600 ~~~L~~l~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~l~~l~~L~~L~Ls 679 (1055)
++.++.+++++|.+++.+|..++.+++|+.|+++
T Consensus 393 ----------------------------------------------~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 393 ----------------------------------------------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp ----------------------------------------------TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred ----------------------------------------------CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf ----------------------------------------------4776189897784654248777568987989895
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 89778989943137886668866588686447855578877459957898365569610007999969987798175454
Q 001554 680 DNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSF 759 (1055)
Q Consensus 680 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 759 (1055)
+|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.++++|+.|++++|++++.+
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 88466854677744998898989788154718978828777329990199513758878816998998975399518968
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 70025999996798258738654699864365898869965689785578957775134100135541023566565341
Q 001554 760 PFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLE 839 (1055)
Q Consensus 760 p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 839 (1055)
|.+++.+++|++|++++|++.+.+|.. +..++.|+.+|+++|+++|.+|..++.....+...........+.... .
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 582 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND--G 582 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGG--GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC--S
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHH--HCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCC--C
T ss_conf 768856899998989789433748877--708898998989888468827957860421223201345421111344--4
Q ss_pred CCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 25432002067741472468876304552999537846436760014988897897878736544684533868888575
Q 001554 840 LSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919 (1055)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~Ld 919 (1055)
...............+........+..+..++++.|.++|.+|..++.++.|+.||||+|+++|.||.++++++.|+.||
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 32222332221001355632320023211001133100462743340335665797858801555877884141578784
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 88870843474103299999947567994733699999-7664123434568887799
Q 001554 920 LSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGP-QFATFTAASFEGNAGLCGF 976 (1055)
Q Consensus 920 Ls~N~lsg~ip~~l~~l~~L~~l~ls~N~Lsg~iP~~~-~~~~~~~~~~~gn~~lcg~ 976 (1055)
|++|+++|.||..+++++.|+.||+|+|+++|.||... .+..+......+| .+.|.
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N-~l~g~ 719 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGP 719 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS-EEEEE
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC-CCCCC
T ss_conf 8688038878967847778998989788023868867757887897879688-15560
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=486.56 Aligned_cols=246 Identities=21% Similarity=0.227 Sum_probs=146.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 89804886767766001288999789656897789899-43137886668866588686447855578877459957898
Q 001554 651 FFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIP-SCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN 729 (1055)
Q Consensus 651 ~l~l~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 729 (1055)
.+++++|++++..|..+..+++|+.|++++|.+++.+| ..+.++++|+.|++++|++.+..+..|..+++|+.|++++|
T Consensus 385 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCC
T ss_conf 68899997776775442077888888677875754357553257546127844899754227645500754310110146
Q ss_pred CCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 365--569610007999969987798175454700259999967982587386546998643658988699656897855
Q 001554 730 HLA--GSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSG 807 (1055)
Q Consensus 730 ~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g 807 (1055)
.+. +..|..+..+++|+.|++++|++++..+.++..+++ |+.|++++|++++
T Consensus 465 ~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~--------------------------L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK--------------------------LEILDLQHNNLAR 518 (680)
T ss_dssp CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT--------------------------CCEEECCSSCCGG
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCC--------------------------CCEEECCCCCCCC
T ss_conf 44225667764555787899989999877679446345534--------------------------6888588997300
Q ss_pred CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 78957775134100135541023566565341254320020677414724688763045529995378464367600149
Q 001554 808 NLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGD 887 (1055)
Q Consensus 808 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~ 887 (1055)
..+... .. .....+..++.++.||+++|+++...+..+..
T Consensus 519 ~~~~~~----~~------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 519 LWKHAN----PG------------------------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp GGSTTS----TT------------------------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCHHHC----CC------------------------------------CCCHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 000004----67------------------------------------74142337998888889999788779777346
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 88897897878736544684533868888575888708434741032-9999994756799473369999976641
Q 001554 888 FDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLA-TLNFLSVLKLSQNLLVGEIPRGPQFATF 962 (1055)
Q Consensus 888 l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~-~l~~L~~l~ls~N~Lsg~iP~~~~~~~~ 962 (1055)
+++|+.|||++|++++..+..|.++++|+.|+|++|++++.+|..+. .++.|+.+++++|++.+..+.-..|..+
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 6675223899997776797683789888889899996870596683011466577983189702577668999999
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=483.66 Aligned_cols=234 Identities=20% Similarity=0.203 Sum_probs=121.5
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 66688665886864478555788774599578983655696-10007999969987798175454700259999967982
Q 001554 696 ILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLP-KSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVL 774 (1055)
Q Consensus 696 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 774 (1055)
.|+.|++++|++.+..|..|..+++|+.|++++|.+++.+| ..+.++++|+.|++++|++.+..+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHH
T ss_conf 67668899997776775442077888888677875754357553257546127844899754227645500754310110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 58738654699864365898869965689785578957775134100135541023566565341254320020677414
Q 001554 775 QSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNK 854 (1055)
Q Consensus 775 ~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (1055)
++|.+.+.-..+..+..++.|+.|++++|++++..+ ..+
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~-~~~---------------------------------------- 500 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DML---------------------------------------- 500 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT-TTT----------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH-HHH----------------------------------------
T ss_conf 146442256677645557878999899998776794-463----------------------------------------
Q ss_pred CCHHHHHHHCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 7246887630455299953784643676--------00149888978978787365446845338688885758887084
Q 001554 855 GLSMELAKILTIFTSIDVSNNQFEGEIP--------EMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLS 926 (1055)
Q Consensus 855 ~~~~~~~~~~~~l~~LdLs~N~l~g~ip--------~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ls 926 (1055)
..++.++.||+++|++++..+ ..++.++.|+.|+|++|+++...+..|+++++|+.|||++|+++
T Consensus 501 -------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 501 -------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp -------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------CCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf -------4553468885889973000000046774142337998888889999788779777346667522389999777
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC
Q ss_conf 3474103299999947567994733699999--76641234345688877999
Q 001554 927 GKIPEKLATLNFLSVLKLSQNLLVGEIPRGP--QFATFTAASFEGNAGLCGFP 977 (1055)
Q Consensus 927 g~ip~~l~~l~~L~~l~ls~N~Lsg~iP~~~--~~~~~~~~~~~gn~~lcg~~ 977 (1055)
+..+..+..++.|+.+++++|++++..|... .+..+......|||+.|.++
T Consensus 574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 67976837898888898999968705966830114665779831897025776
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=449.84 Aligned_cols=272 Identities=22% Similarity=0.278 Sum_probs=167.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 98048867677660012889997896568977898994313788666886658868644785557887745995789836
Q 001554 652 FSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731 (1055)
Q Consensus 652 l~l~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 731 (1055)
+++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+. ..+++|+.|++++|++
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKL 393 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCC
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCC
T ss_conf 98989978851878846899999898989987762866613788899988989977861-----6889823200589972
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 55696100079999699877981754547-00259999967982587386546998643658988699656897855789
Q 001554 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFP-FWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLP 810 (1055)
Q Consensus 732 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p 810 (1055)
+ .+|.. ..+++.|++++|++.+... ..+..+++|+.|++++|++.+..+. .....++.|+.|++++|.+.+..+
T Consensus 394 ~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 394 V-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-QTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp C-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS-SSSCSCTTCCBCEEESCCCSSSCC
T ss_pred C-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3-14554---554312214567534575566651277666666778712555543-335668731002477773644101
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 57775134100135541023566565341254320020677414724688763045529995378464367600149888
Q 001554 811 ARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDA 890 (1055)
Q Consensus 811 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~ 890 (1055)
.... ...+..++.++.|||++|++++.+|..+..+++
T Consensus 469 ~~~~-------------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 469 TELC-------------------------------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp SCCC-------------------------------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CCCC-------------------------------------------HHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHH
T ss_conf 3553-------------------------------------------555447553657778898565539557045012
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97897878736544684533868888575888708434741032999999475679947336999997664123434568
Q 001554 891 LLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGN 970 (1055)
Q Consensus 891 L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~Lsg~iP~~~~~~~~~~~~~~gn 970 (1055)
|+.|+|++|++++..|..+. ++|+.|||++|++++.+|..+. .|+.+++++|.+.+..+. ..|......++
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~ 576 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFINWLNHTN 576 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHHHHHHTT
T ss_pred HHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCC----HHHHHHHHHCC
T ss_conf 21569999978745710110--0455888988847888966837---768899319970253661----89999997368
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 887799998988899
Q 001554 971 AGLCGFPLPKACQNA 985 (1055)
Q Consensus 971 ~~lcg~~~~~~c~~~ 985 (1055)
..+||.|....|..+
T Consensus 577 ~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 577 VTIAGPPADIYCVYP 591 (844)
T ss_dssp TTTCCCGGGCCCSSC
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 530266002755780
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=445.10 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCC---CCCCCCCCCCCCCCCCC---CEEEECCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 998887999999770498899998---76536999899998652---104851999929999859986545568988764
Q 001554 31 RCLEDQKLLLLEFKRGLSFDPQTD---STNKLLSWSSTTDCCSW---DGVTCDPRTGHVIGLDISSSFITGGINGSSSLF 104 (1055)
Q Consensus 31 ~~~~~~~~~ll~~k~~~~~~~~~~---~~~~l~~W~~~~~~c~w---~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~ 104 (1055)
+...+|+.||.+|+.++..+.+.. ..+...+|+.+.+||.| +||+|+.. +||+.|+|+++++.|.+++ +++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~ 102 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIG 102 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGG
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCEEEEEECCCCCCCCCCH--HHH
T ss_conf 6677889999999997589974547767765788777998000147798487678-9788998427665772885--785
Q ss_pred CCCCCCEEECCCCCC
Q ss_conf 787788443899999
Q 001554 105 DLQRLQHLNLADNSL 119 (1055)
Q Consensus 105 ~l~~L~~L~Ls~n~l 119 (1055)
++++|++|||++|.+
T Consensus 103 ~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 103 QLTELEVLALGSHGE 117 (636)
T ss_dssp GCTTCCEEESCCGGG
T ss_pred CCCCCEEEECCCCCC
T ss_conf 684511898768851
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=444.51 Aligned_cols=214 Identities=22% Similarity=0.232 Sum_probs=135.4
Q ss_pred CCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 899978965689778989--94313788666886658868644785557887745995789836556961-000799996
Q 001554 670 AFDLQVLDLSDNHLTGSI--PSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPK-SLSKCTSLE 746 (1055)
Q Consensus 670 l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~ 746 (1055)
+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+. .+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCC
T ss_conf 67589887889966645675221056788898989899677578887347745776878888677756521241765588
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99877981754547002599999679825873865469986436589886996568978557895777513410013554
Q 001554 747 VLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKE 826 (1055)
Q Consensus 747 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~ 826 (1055)
.|++++|.+.+..|..+..+++|+.|++++|++.+.. ++..
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------------------~~~~-------------- 469 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN-------------------------IQKT-------------- 469 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE-------------------------ECSS--------------
T ss_pred EEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC-------------------------CCCC--------------
T ss_conf 8989898557768778737887888989899888543-------------------------4543--------------
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 10235665653412543200206774147246887630455299953784643676001498889789787873654468
Q 001554 827 SQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIP 906 (1055)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 906 (1055)
.....++.++.|++++|++++.+|..++.++.|+.|+|++|++++.+|
T Consensus 470 --------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 470 --------------------------------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp --------------------------------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred --------------------------------HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf --------------------------------124048876688799996670686463265678889898980686896
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 4533868888575888708434741032999999475679947336999
Q 001554 907 ATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPR 955 (1055)
Q Consensus 907 ~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~Lsg~iP~ 955 (1055)
..+.+++.| .||+++|++++.+|..+..++.|+.+++++|++.+..+.
T Consensus 518 ~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred HHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 684756651-898768941426876625677878896779986166775
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=441.96 Aligned_cols=532 Identities=19% Similarity=0.160 Sum_probs=281.0
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCHHHCCCCHHHHHCCCC
Q ss_conf 78844389999999999945779999998848999998888710006889868990479999821101322889860799
Q 001554 108 RLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLT 187 (1055)
Q Consensus 108 ~L~~L~Ls~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~ 187 (1055)
.+++||+++|.+.+. .|..++++++|++|++++|.+.+..|..++++++|++|++++|.+...
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------- 96 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM---------------- 96 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE----------------
T ss_pred CCCEEECCCCCCCCC-CHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCC----------------
T ss_conf 675898158734717-966725676652897889835524851136843367644889856545----------------
Q ss_pred CCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEC
Q ss_conf 88635678843589997300017998759967998589988422258999888879899999983011059999969984
Q 001554 188 NLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHL 267 (1055)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 267 (1055)
. +..++.+++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++
T Consensus 97 ---------------~-~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 97 ---------------A-ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp ---------------C-TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred ---------------C-HHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf ---------------8-655234421537652126766578101223782238988798341147654568765687776
Q ss_pred CCCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 47869876671237999976--9984489998889999999998828874687478879611228999888974278678
Q 001554 268 SLCGLYGRVPEKIFLMPSLC--FLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFF 345 (1055)
Q Consensus 268 s~n~l~~~~p~~l~~l~~L~--~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 345 (1055)
++|.+.+..+..+..+++|+ .|+++ +|.+.+..+..+. ...|+.|++++|.
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~l~L~l~------------------------~n~l~~~~~~~~~-~~~L~~L~l~~~~-- 213 (606)
T 3t6q_A 161 QNNAIHYLSKEDMSSLQQATNLSLNLN------------------------GNDIAGIEPGAFD-SAVFQSLNFGGTQ-- 213 (606)
T ss_dssp CSSCCCEECHHHHHTTTTCCSEEEECT------------------------TCCCCEECTTTTT-TCEEEEEECTTCS--
T ss_pred CCCCCCCCCHHHHHHHCCCCEEEEECC------------------------CCCCCCCCHHHHH-HCCCCCCCCCCCH--
T ss_conf 568445549656332215640389667------------------------9814754866730-0100135567726--
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCC
Q ss_conf 88931001789998899215877888783134476347872656576666753233788--8659983386255556410
Q 001554 346 GSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLI--SLQVLDLRNNSLQGIIPKS 423 (1055)
Q Consensus 346 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~ 423 (1055)
..+..+..+..+....+....+...... .++...+..+. .++.+++++|.+.+..+..
T Consensus 214 -~~~~~~~~l~~~~l~~l~~~~~~~~~~~-------------------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 214 -NLLVIFKGLKNSTIQSLWLGTFEDMDDE-------------------DISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp -CHHHHHHHTTTCEEEEEECCCCTTSCCC-------------------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred -HHHHHHHHCCCCCHHHEECHHHCCCCCC-------------------CCCHHHHCHHHCCCEEEEEEECCCCCCCCHHH
T ss_conf -6777765133564422002011026412-------------------26866743032075059994457658557777
Q ss_pred CCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC
Q ss_conf 03689745999168414697401001366675746656863468898521289999989766888989553364302999
Q 001554 424 LYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQ 503 (1055)
Q Consensus 424 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 503 (1055)
+..+++|++|++++|.+. .+|... ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++...+..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HCCCCCCCEEECCCCCCC-CCCHHH-CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 445667888956288267-778214-165468889771687686760233015768988898997444346245506675
Q ss_pred CCEEECCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 99597879811011079987767764544114676754355543799977998748988796232322248887408856
Q 001554 504 LGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNL 583 (1055)
Q Consensus 504 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L 583 (1055)
|+.|++++|.+..... .+..+..+++|++|++++|++.+..|..+...
T Consensus 352 L~~L~l~~n~l~~~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---------- 399 (606)
T 3t6q_A 352 LRELDLSHDDIETSDC----------------------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC---------- 399 (606)
T ss_dssp CCEEECCSSCCCEEEE----------------------STTTTTTCTTCCEEECCSCSCEEECTTTTTTC----------
T ss_pred CCEEECCCCCCCCCCC----------------------CCHHCCCCCCCCEEECCCCCCCCCCHHHHCCC----------
T ss_conf 8988788996664567----------------------52210567888989898996775788873477----------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 67644466899986445530199866887888899999755154067885556778301102454038980488676776
Q 001554 584 SHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGI 663 (1055)
Q Consensus 584 s~n~l~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~g~~ 663 (1055)
+.++.+++++|.+.+..
T Consensus 400 ---------------------------------------------------------------~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 400 ---------------------------------------------------------------PQLELLDLAFTRLKVKD 416 (606)
T ss_dssp ---------------------------------------------------------------TTCSEEECTTCCEECCT
T ss_pred ---------------------------------------------------------------CCCCEEECCCCCCCCCC
T ss_conf ---------------------------------------------------------------45776878888677756
Q ss_pred CC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 60-012889997896568977898994313788666886658868644---78555788774599578983655696100
Q 001554 664 PL-SLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGT---VPQVIGNECSLRTLDLSQNHLAGSLPKSL 739 (1055)
Q Consensus 664 p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 739 (1055)
+. .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+. .+..+..+++|++|++++|++++..|..+
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 52124176558889898985577687787378878889898998885434543124048876688799996670686463
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 07999969987798175454700259999967982587386546998643658988699656897855789577751341
Q 001554 740 SKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRG 819 (1055)
Q Consensus 740 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~ 819 (1055)
..+++|+.|++++|++++..|.++..++.| .|++++|++.+..|. .+..++.|+.+++++|++.|.|+..|+..|-.
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~ 573 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS--LLPILSQQRTINLRQNPLDCTCSNIYFLEWYK 573 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG--GHHHHHTSSEEECTTCCEECSGGGHHHHHHHH
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHH--HCCCCCCCCEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 265678889898980686896684756651-898768941426876--62567787889677998616677578999997
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=434.04 Aligned_cols=210 Identities=23% Similarity=0.211 Sum_probs=113.3
Q ss_pred CCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 89997896568977898--99431378866688665886864478555788774599578983655696-1000799996
Q 001554 670 AFDLQVLDLSDNHLTGS--IPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLP-KSLSKCTSLE 746 (1055)
Q Consensus 670 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~ 746 (1055)
+++|+.|++++|.+++. ++..+..++.|+.|++++|.+.+ +|..+..+++|+.|++++|++.+..| ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
T ss_conf 898887977587368775201221467755486788995300-0554068888896589887058753764564621378
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 998779817545470025999996798258738654-6998643658988699656897855789577751341001355
Q 001554 747 VLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGS-IKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTK 825 (1055)
Q Consensus 747 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~-~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~ 825 (1055)
.|++++|.+.+..|..+..+++|+.|++++|.+.+. +|.. +.
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~----------------------------------- 470 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--FA----------------------------------- 470 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC--CT-----------------------------------
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHH--HC-----------------------------------
T ss_conf 89896897874335553477878989898983798546776--04-----------------------------------
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 41023566565341254320020677414724688763045529995378464367600149888978978787365446
Q 001554 826 ESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQI 905 (1055)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 905 (1055)
.++.++.||+++|++++.+|..++.+++|+.|+|++|++++.+
T Consensus 471 -------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 471 -------------------------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp -------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred -------------------------------------CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf -------------------------------------5788998989888577648656154646898989899578748
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCC
Q ss_conf 84533868888575888708434741032999-999475679947336999
Q 001554 906 PATLGNLKELGSLDLSHNQLSGKIPEKLATLN-FLSVLKLSQNLLVGEIPR 955 (1055)
Q Consensus 906 p~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~-~L~~l~ls~N~Lsg~iP~ 955 (1055)
|..++++++|+.|||++|+++ .+|..+..++ .|+.+++++|++.+..|.
T Consensus 514 ~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp GGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred HHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 777068876898889898376-66876752102174887628986647764
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=433.43 Aligned_cols=146 Identities=25% Similarity=0.256 Sum_probs=105.9
Q ss_pred CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC-----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 12889997896568977898994-3137886668866588686-----44785557887745995789836556961000
Q 001554 667 LCNAFDLQVLDLSDNHLTGSIPS-CLVSSNILKVLKLRNNEFL-----GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLS 740 (1055)
Q Consensus 667 l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 740 (1055)
+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+. +..+..|.++++|+.|++++|.+++..|..+.
T Consensus 422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 501 (844)
T 3j0a_A 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501 (844)
T ss_dssp HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 51277666666778712555543335668731002477773644101355355544755365777889856553955704
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 7999969987798175454700259999967982587386546998643658988699656897855789577751341
Q 001554 741 KCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRG 819 (1055)
Q Consensus 741 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~ 819 (1055)
++++|+.|+|++|++++..+..+. ++|+.|++++|++.+..|.. +..|+.+++++|++.|.|+..||..|..
T Consensus 502 ~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-----~~~L~~l~l~~Np~~C~c~~~~f~~~~~ 573 (844)
T 3j0a_A 502 HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-----FVSLSVLDITHNKFICECELSTFINWLN 573 (844)
T ss_dssp SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-----CSSCCEEEEEEECCCCSSSCCSHHHHHH
T ss_pred CHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH-----HCCCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 501221569999978745710110--04558889888478889668-----3776889931997025366189999997
Done!