Query 001555
Match_columns 1055
No_of_seqs 138 out of 311
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 16:20:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001555.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_854-858//hhsearch_pdb/001555hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhp_A Poly(A) polymerase; tem 1.0 1 1 218.2 29.4 338 33-438 45-401 (530)
2 1q79_A Poly(A) polymerase alph 1.0 1 1 206.8 22.5 336 81-468 95-444 (514)
3 3nyb_A Poly(A) RNA polymerase 1.0 1 1 108.1 22.4 274 6-369 14-299 (323)
4 4e8f_A Poly(A) RNA polymerase 1.0 1 1 100.3 24.5 286 13-388 44-383 (405)
5 4fh3_A Poly(A) RNA polymerase 1.0 1 1 95.4 24.1 275 18-379 21-347 (349)
6 2ikf_A RNA uridylyl transferas 1.0 1 1 87.8 21.6 236 79-366 65-348 (353)
7 3pq1_A Poly(A) RNA polymerase; 1.0 1 1 81.1 25.2 277 10-369 131-438 (464)
8 1px5_A 2'-5'-oligoadenylate sy 1.0 1 1 75.5 20.1 301 16-367 10-331 (349)
9 3hj4_A Minor editosome-associa 1.0 1 1 74.0 20.6 287 9-379 3-378 (384)
10 2b4v_A RNA editing complex pro 1.0 1 1 71.3 16.1 275 79-369 57-440 (468)
No 1
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=1.00 E-value=1 Score=218.24 Aligned_cols=338 Identities=15% Similarity=0.191 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEECCCCC
Q ss_conf 1689999999999870399988889443774111249-940378971884026730030233347996335999627454
Q 001555 33 TKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIG-ADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKEC 111 (1055)
Q Consensus 33 ~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~-~~~~~f~f~~P~~v~vvGS~~l~t~~k~~~~VDl~v~mP~~~ 111 (1055)
...=+.++.+|+.++..-+.. .+ +..+ ++. ..=..-..|.++|||++|+. .|+..||+++.+|+.+
T Consensus 45 ~~~R~~vl~~L~~lv~~w~~~------v~----~~~~~~~~--~~~~~~~~V~~FGSy~lG~~-~p~SDID~~v~~p~~~ 111 (530)
T 2hhp_A 45 TANRVQVLKILQELAQRFVYE------VS----KKKNMSDG--MARDAGGKIFTYGSYRLGVH-GPGSDIDTLVVVPKHV 111 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HH----HHTTCCHH--HHHHTBCEEEEEHHHHHTCC-CTTCCEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HH----HHCCCCHH--HCCCCCCEEEEECCCCCCCC-CCCCCEEEEEECCCCC
T ss_conf 999999999999999999998------87----75078722--20356835999431035888-9998645899437768
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 67434466512466775999999853159998617871268996601599996988889997099996248976664334
Q 001555 112 FHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKL 191 (1055)
Q Consensus 112 fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~~d~~kPil~l~p~~~~~~~~~~~iRi~~~~~~~F~~~rl 191 (1055)
.. +| |+..+++.|++.+.+.++.+. .+++.|||.+.+. +..|.|.++..+ ..+
T Consensus 112 ~~-~d------------ff~~l~~~L~~~~~v~~v~~I---~~A~VPIIK~~~~-------gi~vDL~f~~~~---~~~- 164 (530)
T 2hhp_A 112 TR-ED------------FFTVFDSLLRERKELDEIAPV---PDAFVPIIKIKFS-------GISIDLICARLD---QPQ- 164 (530)
T ss_dssp CH-HH------------HHHHHHHHHHTCTTEEEEEEE---TTSSSCEEEEEET-------TEEEEEEEEECS---SSC-
T ss_pred CH-HH------------HHHHHHHHHHCCCCCCEEEEE---CCCCCCEEEEEEC-------CEEEEEEEECCC---CCC-
T ss_conf 88-99------------999999998548777269995---5886047999989-------972689983156---556-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCH--------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 76568865778899998897652133410374--------899999999821938899999999999974277767-888
Q 001555 192 NLKRNNVRAFNQDGIPRATPKYNSSILEDMFL--------EDNAEYVEKTISRWKELGEALILLKVWARQRSSIYV-HDC 262 (1055)
Q Consensus 192 ~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~--------~~~l~~l~~~~~~~~~f~dA~~LlkvWl~QRg~~~~-~~g 262 (1055)
.|...++ -|.++|.++-. .....++.+...+.++|+++++++|.||+|||++.+ .|+
T Consensus 165 ip~~l~l--------------~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~ 230 (530)
T 2hhp_A 165 VPLSLTL--------------SDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGF 230 (530)
T ss_dssp BCTTCCS--------------CCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTS
T ss_pred CCCCCCC--------------CCHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7733478--------------85355425665553201007899999997567377899999999999975887434367
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC------HHHHHHHHHCCCEEEEC
Q ss_conf 426999999999941035486774999999999998338887873430689999998------46787666149988848
Q 001555 263 LNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVS------KEEKLQYKEAFPVVICD 336 (1055)
Q Consensus 263 f~~f~~s~ll~~L~~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~~------~~~~~~f~~~f~vvf~D 336 (1055)
+||+.|+||++++|| +.+.+|++|+++.++++.+++||. +|+.++...+.... ..+..+.+..++| +.+
T Consensus 231 lgg~~~~~LVa~~lQ---l~P~~s~~~LL~~FF~~y~~~dw~-~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~I-i~P 305 (530)
T 2hhp_A 231 PGGVAWAMLVARICQ---LYPNACSAVILNRFFIILSEWNWP-QPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPV-ITP 305 (530)
T ss_dssp CCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHHCCTT-SCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCE-ECS
T ss_pred CCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE-ECC
T ss_conf 748999999999982---378999899999999998318999-964740367787565555765577777664358-788
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHH
Q ss_conf 998425234799888999999999999964203--878631222322566555648999513886210113468861468
Q 001555 337 PSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECW 414 (1055)
Q Consensus 337 ~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~Ld~~--~~d~F~~lFl~~~~~~~~fD~~~~i~~~~~~~~~~~~~~~~~~~~ 414 (1055)
..+..|++++++.++++.++.|.+.+.++|++. +.+.|..+|+ +.+|..+||+++.|..... ....+...|
T Consensus 306 ~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~-~~~ff~~y~~~l~i~~~~~------g~~~~~~~w 378 (530)
T 2hhp_A 306 AYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFE-KNDFFFRYKFYLEITAYTR------GSDEQHLKW 378 (530)
T ss_dssp SSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC-CCCHHHHCSEEEEEEEEEE------SCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC-CCCHHHHCCEEEEEEEEEC------CCHHHHHHH
T ss_conf 997775676489889999999999999999987537998799748-8886776686999999756------787888564
Q ss_pred HHH-HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999-999999999742035432899
Q 001555 415 RLY-EQKVHSLLNQGLVDRAKSIRV 438 (1055)
Q Consensus 415 ~~~-~~~i~~lL~~aLgdR~~~i~~ 438 (1055)
..+ +.++..++ ..|.. ...|..
T Consensus 379 ~G~veSr~r~Lv-~~Le~-~~~i~~ 401 (530)
T 2hhp_A 379 SGLVESKVRLLV-MKLEV-LAGIKI 401 (530)
T ss_dssp HHHHHHHHHHHH-HHHHT-STTEEE
T ss_pred CCHHHHHHHHHH-HHHHC-CCCCEE
T ss_conf 232788999999-98610-567516
No 2
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=1.00 E-value=1 Score=206.83 Aligned_cols=336 Identities=14% Similarity=0.140 Sum_probs=225.6
Q ss_pred CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEE
Q ss_conf 40267300302333479963359996274546743446651246677599999985315999861787126899660159
Q 001555 81 KTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVL 160 (1055)
Q Consensus 81 ~~v~vvGS~~l~t~~k~~~~VDl~v~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~~d~~kPil 160 (1055)
..|.++|||++|+. .|+..||+++.+|.++.. +||++ .++..|++.+.+.++... .+++.|||
T Consensus 95 ~~v~~FGS~~lG~~-~p~SDID~~~v~p~~~~~-~dff~------------~l~~~L~~~~~v~~v~~I---~~A~VPII 157 (514)
T 1q79_A 95 GKIFTFGSYRLGVH-TKGADIDALCVAPRHVDR-SDFFT------------SFYDKLKLQEEVKDLRAV---EEAFVPVI 157 (514)
T ss_dssp CEEEEEHHHHHTCC-CTTCCEEEEEEECTTSCH-HHHTT------------HHHHHHHTCTTEEEEEEE---TTSSSCEE
T ss_pred CEEEEEEEECCCCC-CCCCCEEEEEECCCCCCH-HHHHH------------HHHHHHHCCCCCCEEEEE---CCCCCCEE
T ss_conf 35998402225887-998864489944776788-99999------------999998528667469983---57860579
Q ss_pred EEEECCCCCCCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCH
Q ss_conf 9996988889997099996248-976664334765688657788--9999889765213341037489999999982193
Q 001555 161 VVYPAVKSVEAPGFFVRIIPTA-ASLFNIAKLNLKRNNVRAFNQ--DGIPRATPKYNSSILEDMFLEDNAEYVEKTISRW 237 (1055)
Q Consensus 161 ~l~p~~~~~~~~~~~iRi~~~~-~~~F~~~rl~P~rnnvR~~~~--~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~ 237 (1055)
.+... +..|.|.++. +.. ..|..++++...- +-.....+.||..... .++.+...+.
T Consensus 158 K~~~~-------gi~vDL~f~~~~~~-----~~p~~l~l~~~~~L~~ld~~~~~slng~r~~--------d~I~~~vp~~ 217 (514)
T 1q79_A 158 KLCFD-------GIEIDILFARLALQ-----TIPEDLDLRDDSLLKNLDIRAIRSLNGCRVT--------DEILHLVPNI 217 (514)
T ss_dssp EEEET-------TEEEEEEEEECSCS-----SBCTTCCTTCGGGGTTCCHHHHHHHHHHHHH--------HHHHTSSSCH
T ss_pred EEEEC-------CEEEEEEEECCCCC-----CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHH--------HHHHHHCCCC
T ss_conf 99989-------85179997037765-----6752246775365406666665430007899--------9999975674
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 8899999999999974277767-888426999999999941035486774999999999998338887873430689999
Q 001555 238 KELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQI 316 (1055)
Q Consensus 238 ~~f~dA~~LlkvWl~QRg~~~~-~~gf~~f~~s~ll~~L~~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~ 316 (1055)
++|+.+++++|.||+|||++.. .||+||+.|+||++++|| +.+.++..|++..++++.+++||. +|+.++..++.
T Consensus 218 ~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Q---l~P~~s~~~LL~~FF~~y~~~dw~-~pV~l~~~~~~ 293 (514)
T 1q79_A 218 DNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQ---LYPNAIASTLVHKFFLVFSKWEWP-NPVLLKQPEEC 293 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHSCCTT-SCBCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHCCCCC-CCEEECCCCCC
T ss_conf 77899999999999975887434577638999999999997---078998899999999998438999-97573146778
Q ss_pred CCCH----H--HHHHHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 9984----6--787666149988848998425234799888999999999999964203--8786312223225665556
Q 001555 317 GVSK----E--EKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFLTKIDFPAKY 388 (1055)
Q Consensus 317 ~~~~----~--~~~~f~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~Ld~~--~~d~F~~lFl~~~~~~~~f 388 (1055)
.... + ...+-....++ +-+.....|++++++.++++.++.|.+.+.++|++. +...|+.+|. +.+|..+|
T Consensus 294 ~l~~~~w~p~~~~~dr~~~m~I-idP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~-~~~ff~~y 371 (514)
T 1q79_A 294 NLNLPVWDPRVNPSDRYHLMPI-ITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFE-APNFFQKY 371 (514)
T ss_dssp SSCCCCCCTTTCGGGGGCSSCB-BCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC-CCCHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCCEEE-ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-CCCHHHHC
T ss_conf 8777655776687676662238-688987776666579889999999999999999987528998899827-76666652
Q ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCEEEEEE
Q ss_conf 4899951388621011346886146899999999999974203543289970599986433578--77689974599999
Q 001555 389 DYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENG--LAVLDREPLLVGIS 466 (1055)
Q Consensus 389 D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lL~~aLgdR~~~i~~~~~~~~~~w~i~~~--~~~~~~~~i~iGl~ 466 (1055)
++++.|...+.. ..+...|..+...=-+.|...|. |...|.+.++-+. ...-.+. ..........|||.
T Consensus 372 ~~yl~v~~~a~~-------~~~~~~w~G~veSr~r~Lv~~le-~~~~i~~a~~~P~-~f~~~~~~~~~~~~~~~~~iGL~ 442 (514)
T 1q79_A 372 KHYIVLLASAPT-------EKQRLEWVGLVESKIRILVGSLE-KNEFITLAHVNPQ-SFPAPKENPDKEEFRTMWVIGLV 442 (514)
T ss_dssp SEEEEEEEEESS-------HHHHHHHHHHHHTTHHHHHHHHH-TSTTEEEEEECSC-CEECCCSCTTSCCEEEEEEEEEE
T ss_pred CEEEEEEEEECC-------HHHHHHHEEHHHHHHHHHHHHHC-CCCCCEEEECCCC-CCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 208999998799-------78851310204552899987750-4887405304766-65774334667723589999776
Q ss_pred EC
Q ss_conf 46
Q 001555 467 VS 468 (1055)
Q Consensus 467 l~ 468 (1055)
++
T Consensus 443 ~~ 444 (514)
T 1q79_A 443 FK 444 (514)
T ss_dssp EC
T ss_pred EC
T ss_conf 55
No 3
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=108.11 Aligned_cols=274 Identities=16% Similarity=0.222 Sum_probs=185.3
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEE
Q ss_conf 54645740110898640135698701016899999999998703999888894437741112499403789718840267
Q 001555 6 TVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKI 85 (1055)
Q Consensus 6 ~~~~~~~f~LQidELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~v 85 (1055)
+....+.+--+|.++.+.++|.... ...-+.++.++++++.++- |-..|.+
T Consensus 14 ~~~~~~~L~~Ei~~f~~~i~Pt~eE--~~~R~~~~~~l~~~~~~~~---------------------------p~~~v~~ 64 (323)
T 3nyb_A 14 QKEISDWLTFEIKDFVAYISPSREE--IEIRNQTISTIREAVKQLW---------------------------PDADLHV 64 (323)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCCHHH--HHHHHHHHHHHHHHHHTTC---------------------------TTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEE
T ss_conf 5339999999999999986969999--9999999999999999988---------------------------9987999
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf 30030233347996335999627454674344665124667759999998531599986178712689966015999969
Q 001555 86 GGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPA 165 (1055)
Q Consensus 86 vGS~~l~t~~k~~~~VDl~v~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~~d~~kPil~l~p~ 165 (1055)
+||++.|+.. ++-.||+.|..|..... .| -.|..++..|++.+...++..- ..++.||+.+.-.
T Consensus 65 fGS~~~g~~~-~~SDiDl~v~~~~~~~~-----------~~-~~l~~l~~~L~~~~~~~~v~~I---~~ArVPIIk~~~~ 128 (323)
T 3nyb_A 65 FGSYSTDLYL-PGSDIDCVVTSELGGKE-----------SR-NNLYSLASHLKKKNLATEVEVV---AKARVPIIKFVEP 128 (323)
T ss_dssp ESTTTTTCCC-TTSCEEEEECSSCCGGG-----------HH-HHHHHHHHHHHHTTSCSSCEEE---ESSSCEEEEEEET
T ss_pred ECCCCCCCCC-CCCCCEEEEECCCCCHH-----------HH-HHHHHHHHHHHHCCCCEEEEEE---ECCCCCEEEEEEC
T ss_conf 5763559989-99981499954888716-----------78-9999999998557984279997---5157877999975
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 88889997099996248976664334765688657788999988976521334103748999999998219388999999
Q 001555 166 VKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALI 245 (1055)
Q Consensus 166 ~~~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~ 245 (1055)
. ++..+.|-.. |. ....| ..++.......|.|+..++
T Consensus 129 ~-----~gi~vDIs~~---------------~~-----------~g~~~------------t~li~~~~~~~~~~r~lv~ 165 (323)
T 3nyb_A 129 H-----SGIHIAVSFE---------------RT-----------NGIEA------------AKLIREWLDDTPGLRELVL 165 (323)
T ss_dssp T-----TTEEEEEESS---------------CS-----------STTHH------------HHHHHHHHHSCTTHHHHHH
T ss_pred C-----CCCEEEEEEC---------------CC-----------HHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_conf 7-----7806888843---------------73-----------89999------------9999999775252889999
Q ss_pred HHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHHHHHH-CCCCCCCCEEECCCCCCC
Q ss_conf 99999974277767-88842699999999994103------54867749999999999983-388878734306899999
Q 001555 246 LLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLD------KINNSMKALQILRVVLDFIA-TSKLWNRGLYFPPKGQIG 317 (1055)
Q Consensus 246 LlkvWl~QRg~~~~-~~gf~~f~~s~ll~~L~~~~------~l~~~~SsyQifr~~l~fLa-~~d~~~~~i~~~~~~~~~ 317 (1055)
++|.|+++||++.. .||+++|.|++|+++.+|.. .+.+..+.-+++..++.|.+ ..||.+.+|.+...+...
T Consensus 166 ~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~ 245 (323)
T 3nyb_A 166 IVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVY 245 (323)
T ss_dssp HHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCE
T ss_conf 99999997499976579847799999999999748866766678624599999999999636068997179984498604
Q ss_pred CCHHHHHHH---HHCCCEEEECCCCC-EEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 984678766---61499888489984-25234799888999999999999964203
Q 001555 318 VSKEEKLQY---KEAFPVVICDPSAQ-VNLAFRMTSVGFCELQDEAASTLQCMDKC 369 (1055)
Q Consensus 318 ~~~~~~~~f---~~~f~vvf~D~sg~-~Nl~~~~t~~s~~~L~~eA~~tl~~Ld~~ 369 (1055)
.+...-..+ +..++.++.||... .|+.... ..+..++.|.+.+.++|.+.
T Consensus 246 ~~k~~~~~~~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~A~~~L~~~ 299 (323)
T 3nyb_A 246 FPKSTWSAIQPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAGAFDLLTNR 299 (323)
T ss_dssp EEGGGCGGGCSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHHHHHHHHHH
T ss_pred EEHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 4677601002467775379868998776456464--87999999999999999986
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=1.00 E-value=1 Score=100.34 Aligned_cols=286 Identities=16% Similarity=0.183 Sum_probs=185.9
Q ss_pred CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCC
Q ss_conf 01108986401356987010168999999999987039998888944377411124994037897188402673003023
Q 001555 13 MDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSIN 92 (1055)
Q Consensus 13 f~LQidELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~ 92 (1055)
+--+|.++++.++|.... ...-+.++.+|+.+|.++- |-..|.++||++.|
T Consensus 44 L~~~i~~~~~~i~Pt~eE--~~~R~~v~~~l~~~i~~~~---------------------------p~~~v~~fGS~~~G 94 (405)
T 4e8f_A 44 FTKFCYEVYNEIKISDKE--FKEKRAALDTLRLCLKRIS---------------------------PDAELVAFGSLESG 94 (405)
T ss_dssp HHHHHHHHHHHHBCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------TTCEEEEESHHHHT
T ss_pred HHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEEEECCCC
T ss_conf 999999999980979999--9999999999999999878---------------------------99779998555479
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEE-ECCCCCCC
Q ss_conf 33479963359996274546743446651246677599999985315999861787126899660159999-69888899
Q 001555 93 CVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVY-PAVKSVEA 171 (1055)
Q Consensus 93 t~~k~~~~VDl~v~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~~d~~kPil~l~-p~~~~~~~ 171 (1055)
+..+ +-.||+.|..|... +.. -++..++..|++. ..++. .-..++.||+.+. -.... ..
T Consensus 95 ~~~~-~SDiDl~v~~~~~~-~~~------------~~l~~l~~~L~~~--~~~v~---~i~~ArVPIIK~~~d~~~g-~~ 154 (405)
T 4e8f_A 95 LALK-NSDMDLCVLMDSRV-QSD------------TIALQFYEELIAE--GFEGK---FLQRARIPIIKLTSDTKNG-FG 154 (405)
T ss_dssp CCBS-SCCEEEEEECCC----CT------------THHHHHHHHHHHT--TEEEE---EEEETTEEEEEEEEESSSS-CC
T ss_pred CCCC-CCCEEEEEEECCCC-CHH------------HHHHHHHHHHHHC--CCEEE---EECCCCCCEEEEEECCCCC-CC
T ss_conf 9899-99978999726899-999------------9999999999860--77448---8625778679999614777-66
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 97099996248976664334765688657788999988976521334103748999999998219388999999999999
Q 001555 172 PGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWA 251 (1055)
Q Consensus 172 ~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~LlkvWl 251 (1055)
.++.+.|-. ||. ...+|+ .++....+..|.|+..++++|.||
T Consensus 155 ~gi~~DIs~---------------~n~-----------~g~~~t------------~ll~~y~~~~p~~r~Lv~~lK~wa 196 (405)
T 4e8f_A 155 ASFQCDIGF---------------NNR-----------LAIHNT------------LLLSSYTKLDARLKPMVLLVKHWA 196 (405)
T ss_dssp TTCCEEEEE---------------SCH-----------HHHHHH------------HHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred CCEEEEEEE---------------CCC-----------CHHHHH------------HHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 864898762---------------454-----------157779------------999999861878899999999999
Q ss_pred HHCCCCCC-CCCCHHHHHHHHHHHHH-HCCC--C--------------------------------CCCCCHHHHHHHHH
Q ss_conf 74277767-88842699999999994-1035--4--------------------------------86774999999999
Q 001555 252 RQRSSIYV-HDCLNGYLISILLSYLV-SLDK--I--------------------------------NNSMKALQILRVVL 295 (1055)
Q Consensus 252 ~QRg~~~~-~~gf~~f~~s~ll~~L~-~~~~--l--------------------------------~~~~SsyQifr~~l 295 (1055)
++||++.. .||+++|.|++|+++.+ |... + ....|--+++..++
T Consensus 197 k~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF 276 (405)
T 4e8f_A 197 KRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFF 276 (405)
T ss_dssp HHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 97489867579857699999999999723588757704323666665517754010104243226666356999999999
Q ss_pred HHHH-CCCCCCCCEEECCCCCCCCCHHHHHHH--------------HHCCCEEEECCCC-CEEECCCCCHHHHHHHHHHH
Q ss_conf 9983-388878734306899999984678766--------------6149988848998-42523479988899999999
Q 001555 296 DFIA-TSKLWNRGLYFPPKGQIGVSKEEKLQY--------------KEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEA 359 (1055)
Q Consensus 296 ~fLa-~~d~~~~~i~~~~~~~~~~~~~~~~~f--------------~~~f~vvf~D~sg-~~Nl~~~~t~~s~~~L~~eA 359 (1055)
.|-+ ..||.+.+|.+...+ .-++.+. ..| ...+....-||-- ..|+...++...+..++.|.
T Consensus 277 ~yY~~~Fd~~~~vIsir~~g-~~~~K~~-k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF 354 (405)
T 4e8f_A 277 RFYAYKFEPREKVVTFRRPD-GYLTKQE-KGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEF 354 (405)
T ss_dssp HHHHHTCCTTTBEECSSSTT-CCCBHHH-HTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCEEEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99720268998479981688-6333200-155653344554222356776279978887565555677889999999999
Q ss_pred HHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 9999964203-8786312223225665556
Q 001555 360 ASTLQCMDKC-GDGGFEETFLTKIDFPAKY 388 (1055)
Q Consensus 360 ~~tl~~Ld~~-~~d~F~~lFl~~~~~~~~f 388 (1055)
+.+..+|.+. ..+.|+.+|- +.+++.++
T Consensus 355 ~rA~~iL~~~~~~~~w~~Lf~-~~~~~~~~ 383 (405)
T 4e8f_A 355 MAASRLLNSRSYPIPYDSLFE-EAPIPPRR 383 (405)
T ss_dssp HHHHHHHTCSSSSCCGGGGGS-CCCCC---
T ss_pred HHHHHHHHHHCCCCCHHHHHC-CCCCCCCC
T ss_conf 999999852035898999828-67776212
No 5
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=1.00 E-value=1 Score=95.42 Aligned_cols=275 Identities=16% Similarity=0.156 Sum_probs=164.2
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC
Q ss_conf 98640135698701016899999999998703999888894437741112499403789718840267300302333479
Q 001555 18 EELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKP 97 (1055)
Q Consensus 18 dELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~~k~ 97 (1055)
.|+.++++|.... .+.-+.++.+|+.+|.++= |-..|.+.||++.|+..+
T Consensus 21 ~~l~~~~~pt~~e--~~~R~~~~~~l~~~i~~~~---------------------------p~~~v~~fGS~~~g~~~~- 70 (349)
T 4fh3_A 21 YEVYNEIKISDKE--FKEKRAALDTLRLCLKRIS---------------------------PDAELVAFGSLESGLALK- 70 (349)
T ss_dssp HHHHHHHBCCHHH--HHHHHHHHHHHHHHHHTTC---------------------------TTCEEEEESHHHHTCCBS-
T ss_pred HHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEEEECCCCCCCC-
T ss_conf 9999970989999--9999999999999999988---------------------------998999971144789997-
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCEEEE
Q ss_conf 96335999627454674344665124667759999998531599986178712689966015999969888899970999
Q 001555 98 AVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVR 177 (1055)
Q Consensus 98 ~~~VDl~v~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~~d~~kPil~l~p~~~~~~~~~~~iR 177 (1055)
+-.||+.|..|...- +..+...+...+.+.. .++.. -..++.||+...-.......++..+.
T Consensus 71 ~SDiDl~v~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~---i~~ArVPiik~~~~~~~~~~~~~~~D 132 (349)
T 4fh3_A 71 NSDMDLCVLMDSRVQ-------------SDTIALQFYEELIAEG--FEGKF---LQRARIPIIKLTSDTKNGFGASFQCD 132 (349)
T ss_dssp SCCEEEEEECCTTSC-------------HHHHHHHHHHHHHHTT--EEEEE---EEETTEEEEEEEEESSSSSCTTCCEE
T ss_pred CCCEEEEEECCCCCC-------------HHHHHHHHHHHHHHHC--CCCEE---EEEEEEEEEEEEECCCCCCCCCCEEE
T ss_conf 989779996588878-------------5899999999987501--46557---55404335999841456643562454
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 96248976664334765688657788999988976521334103748999999998219388999999999999742777
Q 001555 178 IIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSI 257 (1055)
Q Consensus 178 i~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~LlkvWl~QRg~~ 257 (1055)
|-. ||. ...+ ...++.......|.|+..++++|.||++||++
T Consensus 133 is~---------------~~~-----------~g~~------------~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~ 174 (349)
T 4fh3_A 133 IGF---------------NNR-----------LAIH------------NTLLLSSYTKLDARLKPMVLLVKHWAKRKQIN 174 (349)
T ss_dssp EEE---------------SCH-----------HHHH------------HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCC
T ss_pred CCC---------------CCC-----------HHHH------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 676---------------762-----------6888------------99999998620877889999999999984999
Q ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCC-----------------------------------CCCCHHHHHHHHHHHHH-C
Q ss_conf 67-88842699999999994103548-----------------------------------67749999999999983-3
Q 001555 258 YV-HDCLNGYLISILLSYLVSLDKIN-----------------------------------NSMKALQILRVVLDFIA-T 300 (1055)
Q Consensus 258 ~~-~~gf~~f~~s~ll~~L~~~~~l~-----------------------------------~~~SsyQifr~~l~fLa-~ 300 (1055)
.. .||+++|.|++|+++-+|..... ...|.-+++..++.|-+ .
T Consensus 175 ~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~ 254 (349)
T 4fh3_A 175 SPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYK 254 (349)
T ss_dssp CGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 86789877299999999999734678768066644545663135763554420333255447543899999999986420
Q ss_pred CCCCCCCEEECCCCCCCCCHH-------------HHHHHHHCCCEEEECCCC-CEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 888787343068999999846-------------787666149988848998-425234799888999999999999964
Q 001555 301 SKLWNRGLYFPPKGQIGVSKE-------------EKLQYKEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEAASTLQCM 366 (1055)
Q Consensus 301 ~d~~~~~i~~~~~~~~~~~~~-------------~~~~f~~~f~vvf~D~sg-~~Nl~~~~t~~s~~~L~~eA~~tl~~L 366 (1055)
.||.+.++.....+ .-.+.. ........++....||-- ..|+...++..++..++.|-+.+.++|
T Consensus 255 Fd~~~~vIsi~~~~-~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L 333 (349)
T 4fh3_A 255 FEPREKVVTFRRPD-GYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLL 333 (349)
T ss_dssp CCTTTBCBCSSSTT-CCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCC-CCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 58778469843898-86556774344444456753345778835999899989873799989899999999999999997
Q ss_pred HHCC-CCCCCCCCC
Q ss_conf 2038-786312223
Q 001555 367 DKCG-DGGFEETFL 379 (1055)
Q Consensus 367 d~~~-~d~F~~lFl 379 (1055)
.+.. ...|+.+|-
T Consensus 334 ~~~~~~~~~~~lfe 347 (349)
T 4fh3_A 334 NSRSYPIPYDSLFE 347 (349)
T ss_dssp HCCSSSCCGGGGGS
T ss_pred HCCCCCCCHHHHHH
T ss_conf 27456988788702
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=1.00 E-value=1 Score=87.77 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=155.3
Q ss_pred CCCEEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-HH--HHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 884026730030-2333479963359996274546743446651-24--6677599999985315999861787126899
Q 001555 79 KPKTFKIGGSYS-INCVVKPAVNVDLFVGLPKECFHEKDYLNHR-YH--AKRCLYLCVIKKHLKSSPSFDKVEWSAMQNE 154 (1055)
Q Consensus 79 ~P~~v~vvGS~~-l~t~~k~~~~VDl~v~mP~~~fq~KDylN~R-Y~--~KRA~YLa~iA~~L~~~~~~~~v~~~~~~~d 154 (1055)
+-..|.+.||++ .|... ++-.||+.|..|...-..| ..+.+ .. ..+.-.|..++..|++.+...++.. -.+
T Consensus 65 p~~~v~~FGS~~vtGl~l-p~SDIDl~v~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~---i~~ 139 (353)
T 2ikf_A 65 PLMRLYTFGSTVVYGVHE-KGSDVDFVVLNKTDVEDGK-GGDAATQVAKGLQADILAKLARVIRQKHLSWNVEE---VRR 139 (353)
T ss_dssp TTCEEEEESHHHHHSSCC-TTCCEEEEEECHHHHHSTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEE---ECS
T ss_pred CCCEEEEECCCCCCCCCC-CCCCEEEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE---ECC
T ss_conf 990899823764168899-8766238986255556664-43302445556699999999999983688874699---424
Q ss_pred CCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 66015999969888899970999962489766643347656886577889999889765213341037489999999982
Q 001555 155 ARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTI 234 (1055)
Q Consensus 155 ~~kPil~l~p~~~~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~ 234 (1055)
++.||+.+... ++..+.|-. ||. ...+|+ .++....
T Consensus 140 ArVPIiK~~~~------~~i~~Dis~---------------~n~-----------~g~~~t------------~ll~~~~ 175 (353)
T 2ikf_A 140 TRVPVVRVKGG------GAVDFDITA---------------YRR-----------NGVRNS------------ALLRAYF 175 (353)
T ss_dssp SSSCEEEEECS------SSCEEEEEE---------------SCC-----------HHHHHH------------HHHHHHH
T ss_pred CCEEEEEEECC------CCCEEEEEE---------------CCC-----------CHHHHH------------HHHHHHH
T ss_conf 66369999858------971799882---------------585-----------389999------------9999999
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCC-C-CCCHHHHHHHHHHHHHHCCC----CC-----------------------CCC
Q ss_conf 1938899999999999974277767-8-88426999999999941035----48-----------------------677
Q 001555 235 SRWKELGEALILLKVWARQRSSIYV-H-DCLNGYLISILLSYLVSLDK----IN-----------------------NSM 285 (1055)
Q Consensus 235 ~~~~~f~dA~~LlkvWl~QRg~~~~-~-~gf~~f~~s~ll~~L~~~~~----l~-----------------------~~~ 285 (1055)
...|.|+..++++|.|+++||++.. . ||+++|.|++|+++.+|..+ +. ...
T Consensus 176 ~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2ikf_A 176 EQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGL 255 (353)
T ss_dssp HHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf 86922999999999999986999877799834999999999999726889976811167655157776776566777845
Q ss_pred CHHHHHHHHHHHHH-CCCCCCCCEEECCCCCCCCCHHHHHHH-------------HHCCCEEEECCCC-CEEECCCCCHH
Q ss_conf 49999999999983-388878734306899999984678766-------------6149988848998-42523479988
Q 001555 286 KALQILRVVLDFIA-TSKLWNRGLYFPPKGQIGVSKEEKLQY-------------KEAFPVVICDPSA-QVNLAFRMTSV 350 (1055)
Q Consensus 286 SsyQifr~~l~fLa-~~d~~~~~i~~~~~~~~~~~~~~~~~f-------------~~~f~vvf~D~sg-~~Nl~~~~t~~ 350 (1055)
+--+++..++.|-+ ..||.+.+|.+...+ ..+.. ...+ ...+.....||-- ..|+...++..
T Consensus 256 slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~--~~~k~-~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~ 332 (353)
T 2ikf_A 256 ELGTQVLDFLHFFLHEFDSDKQVISLNRPG--ITTKE-ELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPL 332 (353)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTEEECSSSSS--CEEHH-HHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCEEEECCCCC--CEECH-HHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf 599999999999632057674289767996--02404-304453323111135777766389989999998656798989
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999964
Q 001555 351 GFCELQDEAASTLQCM 366 (1055)
Q Consensus 351 s~~~L~~eA~~tl~~L 366 (1055)
.++.++.|-+.+.+.+
T Consensus 333 ~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 333 KRDFLRRHLEKARDTA 348 (353)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 7
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=81.14 Aligned_cols=277 Identities=16% Similarity=0.193 Sum_probs=159.1
Q ss_pred CCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEE
Q ss_conf 57401108986401356987010168999999999987039998888944377411124994037897188402673003
Q 001555 10 TDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSY 89 (1055)
Q Consensus 10 ~~~f~LQidELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~ 89 (1055)
..++-.||.++.+.++|.... ...=..++.++++++..+ | |-..|.+.||+
T Consensus 131 a~sl~~EI~~f~~~i~PT~eE--~~~R~~vv~~le~ii~~~--------------------------f-P~a~V~~FGS~ 181 (464)
T 3pq1_A 131 AESIDDQLNTLLKEFQLTEEN--TKLRYLTCSLIEDMAAAY--------------------------F-PDCIVRPFGSS 181 (464)
T ss_dssp SSSHHHHHHHHHHHHBCCHHH--HHHHHHHHHHHHHHHTTT--------------------------S-TTCEEEEEGGG
T ss_pred CCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHH--------------------------C-CCCEEEEECCC
T ss_conf 421789999999986999999--999999999999999987--------------------------8-99879996877
Q ss_pred CCCCCCCCCCCEEEEEECCCCC--------------CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCEEEECCCCC
Q ss_conf 0233347996335999627454--------------67434466512466775999999853159-99861787126899
Q 001555 90 SINCVVKPAVNVDLFVGLPKEC--------------FHEKDYLNHRYHAKRCLYLCVIKKHLKSS-PSFDKVEWSAMQNE 154 (1055)
Q Consensus 90 ~l~t~~k~~~~VDl~v~mP~~~--------------fq~KDylN~RY~~KRA~YLa~iA~~L~~~-~~~~~v~~~~~~~d 154 (1055)
+.|... ++-.+||.|..|..- +|-|.--+.|+-..+ .|..++..|++. +.+.++. .-..
T Consensus 182 ~tGL~l-p~SDIDlvl~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~--iL~~la~~L~~~~~~~~~v~---~I~~ 255 (464)
T 3pq1_A 182 VNTFGK-LGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQK--ILSVLGECLDHFGPGCVGVQ---KILN 255 (464)
T ss_dssp TSSCCB-TTCCEEEEEECC-----CCSCEECC---EECCCCCSCHHHHHHH--HHHHHHHHHHHSSTTEEEEE---EECS
T ss_pred CCCCCC-CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHCCCCCCEEE---EECC
T ss_conf 248889-99995799964775555432356631345541244356778999--99999999984389973268---8537
Q ss_pred CCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 66015999969888899970999962489766643347656886577889999889765213341037489999999982
Q 001555 155 ARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTI 234 (1055)
Q Consensus 155 ~~kPil~l~p~~~~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~ 234 (1055)
++.||+...-.. ++..+.|-. || ....+|+. ++....
T Consensus 256 ARVPIIKf~~~~-----tgi~~DIS~---------------nn-----------~~gi~ns~------------ll~~y~ 292 (464)
T 3pq1_A 256 ARCPLVRFSHQA-----SGFQCALTT---------------NN-----------RIALTSSE------------LLYIYG 292 (464)
T ss_dssp SSSCEEEEEETT-----TCCEEEEEC---------------SC-----------TTHHHHHH------------HHHHHH
T ss_pred CCCCEEEEEECC-----CCEEEEEEC---------------CC-----------CCHHHHHH------------HHHHHH
T ss_conf 898779999857-----883899846---------------88-----------72899999------------999998
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCC-CCC-CHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHH--HHHHHCCC--CCCC
Q ss_conf 1938899999999999974277767-888-426999999999941035--48677499999999--99983388--8787
Q 001555 235 SRWKELGEALILLKVWARQRSSIYV-HDC-LNGYLISILLSYLVSLDK--INNSMKALQILRVV--LDFIATSK--LWNR 306 (1055)
Q Consensus 235 ~~~~~f~dA~~LlkvWl~QRg~~~~-~~g-f~~f~~s~ll~~L~~~~~--l~~~~SsyQifr~~--l~fLa~~d--~~~~ 306 (1055)
+..|.++.-++++|.|+++||++.. .|| +++|.|.+|+.+.+|... +-+.....+-+... -..+..++ +...
T Consensus 293 ~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~d 372 (464)
T 3pq1_A 293 ALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRD 372 (464)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC---------------
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCC
T ss_conf 74821889999999999980998656699767399999999999715998489767823213755441224645664341
Q ss_pred --CEEECCCCCCCCCH-HHHHHHHHCCCEEEECCC-----CCEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf --34306899999984-678766614998884899-----8425234799888999999999999964203
Q 001555 307 --GLYFPPKGQIGVSK-EEKLQYKEAFPVVICDPS-----AQVNLAFRMTSVGFCELQDEAASTLQCMDKC 369 (1055)
Q Consensus 307 --~i~~~~~~~~~~~~-~~~~~f~~~f~vvf~D~s-----g~~Nl~~~~t~~s~~~L~~eA~~tl~~Ld~~ 369 (1055)
.+. ...+ ..+. +.+..|.+.|.. +|-. -.+|+..+++....+.++.+++.|.-+|...
T Consensus 373 l~~l~--~~~N-~~slgeLL~gFF~yYa~--FDf~~~vIsI~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~ 438 (464)
T 3pq1_A 373 LSRIK--PSQN-TETLELLLKEFFEYFGN--FAXXXXXXXXXXXXXXXVSQSQLQKFVDLARESAWILQQE 438 (464)
T ss_dssp --------CCC-CCCHHHHHHHHHHHGGG--CCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCC--CCCC-CCCHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76637--8888-57799999999999984--8874333211211124448999999999999999997401
No 8
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=1.00 E-value=1 Score=75.46 Aligned_cols=301 Identities=17% Similarity=0.184 Sum_probs=175.3
Q ss_pred CHHHHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCC
Q ss_conf 089864-0135698701016899999999998703999888894437741112499403789718840267300302333
Q 001555 16 KVEELL-KEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCV 94 (1055)
Q Consensus 16 QidELL-~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~ 94 (1055)
|+++.+ ..++|+... ...+......+.+.|.+.--.+. . .... -..+-.+|||+-+|+
T Consensus 10 ~l~~fi~~~l~p~~~~--~~~i~~~~~~I~~~L~~~~~~~~----~----------~~~~-----v~~v~~~GSyargT~ 68 (349)
T 1px5_A 10 DLDKFIEDHLLPNTXF--RTQVKEAIDIVXRFLKERCFQGT----A----------DPVR-----VSKVVKGGSSGKGTT 68 (349)
T ss_dssp GHHHHHHHHTSCCHHH--HHHHHHHHHHHHHHHHHHTTCC-----------------CCE-----EEEEEEEEEC-----
T ss_pred HHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHCCCC----C----------CCCC-----EEEEEEECCCCCCCC
T ss_conf 9999999546998788--99999999999999976302455----6----------7752-----478997167378843
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCEEEECCCCCCCEE-EEEEEECCCCCCC
Q ss_conf 4799633599962745467434466512466775999999853159--998617871268996601-5999969888899
Q 001555 95 VKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSS--PSFDKVEWSAMQNEARKP-VLVVYPAVKSVEA 171 (1055)
Q Consensus 95 ~k~~~~VDl~v~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~--~~~~~v~~~~~~~d~~kP-il~l~p~~~~~~~ 171 (1055)
+++...|||+|.+|.. -...|.+ ..+.-++..|-+.|.+. ....++.++........| .+.+.-.... ..
T Consensus 69 lrg~sDiDlvV~l~~~-~~~~~~~-----~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~-~~ 141 (349)
T 1px5_A 69 LRGRSDADLVVFLTKL-TSFEDQL-----RRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQ-LQ 141 (349)
T ss_dssp ---CEEEEEEEEEESC-SCTTHHH-----HTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETT-TT
T ss_pred CCCCCCEEEEEEECCC-CCHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCC-CC
T ss_conf 6898744599997898-7666677-----569999999999999864310226641572034567854899997367-67
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-----------CCCHHHHHHHHHHHHHCHHHH
Q ss_conf 970999962489766643347656886577889999889765213341-----------037489999999982193889
Q 001555 172 PGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILE-----------DMFLEDNAEYVEKTISRWKEL 240 (1055)
Q Consensus 172 ~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~-----------D~~~~~~l~~l~~~~~~~~~f 240 (1055)
.++.+.|.||....- .+.+ +..+....|...|-. .+....|.+++.+ ....+
T Consensus 142 ~~~~vDVvPa~~~l~---~~~~-----------~~~~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~ 204 (349)
T 1px5_A 142 QEVEFDVLPAFDALG---QWTP-----------GYKPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKL 204 (349)
T ss_dssp EEEEEEEEEEECSSC---SCCT-----------TSCCCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHH
T ss_pred CCEEEEEEEEHHHHC---CCCC-----------CCCCCHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHH---CCHHH
T ss_conf 746999997134313---0014-----------668983778988760466566761202077999999985---84988
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCH
Q ss_conf 99999999999742777678884269999999999410354867749999999999983388878734306899999984
Q 001555 241 GEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSK 320 (1055)
Q Consensus 241 ~dA~~LlkvWl~QRg~~~~~~gf~~f~~s~ll~~L~~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~~~ 320 (1055)
++-|+|+|-|.++-+...+..++.+|.+-+|++|....+.-...++-+|-|+.+|++|+... .-.++....- +...
T Consensus 205 k~lIRLlK~W~~~~~~~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~--~~~i~w~~~y--~~~~ 280 (349)
T 1px5_A 205 KSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQ--KLCIFWEAYY--DFTN 280 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGG--GCEECCCSSC--CSSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEECCC--CCCC
T ss_conf 89999999999984330368989818999999999871798557878999999999997277--3540654344--6652
Q ss_pred HHHHHH-----HHCCCEEEECCCC-CEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 678766-----6149988848998-4252347998889999999999999642
Q 001555 321 EEKLQY-----KEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEAASTLQCMD 367 (1055)
Q Consensus 321 ~~~~~f-----~~~f~vvf~D~sg-~~Nl~~~~t~~s~~~L~~eA~~tl~~Ld 367 (1055)
+....| ...-|++ +||.- +-|+.+. +...++++.++|+..|+..-
T Consensus 281 ~~~~~fl~~~l~~~~p~I-~DP~dp~~NVa~~-~~~~~~~~~~~A~~~l~~~~ 331 (349)
T 1px5_A 281 PVVGRCMLQQLKKPRPVI-LDPADPTGNVGGG-DTHSWQRLAQEARVWLGYPC 331 (349)
T ss_dssp HHHHHHHHHHHTSSSCEE-BCTTCTTCBTTCS-CHHHHHHHHHHHHHHTTSGG
T ss_pred HHHHHHHHHHHCCCCCEE-ECCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCHH
T ss_conf 667765355415799746-6999987762678-56529999999999995654
No 9
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=1.00 E-value=1 Score=74.05 Aligned_cols=287 Identities=13% Similarity=0.119 Sum_probs=169.5
Q ss_pred CCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 45740110898640135698701016899999999998703999888894437741112499403789718840267300
Q 001555 9 LTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGS 88 (1055)
Q Consensus 9 ~~~~f~LQidELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS 88 (1055)
.+..|--+|.++.+.++|.... ...-+.++.+++++|.++= |-..|.+.||
T Consensus 3 ~~~~lt~EI~dFy~~i~PT~eE--~~~R~~vv~~l~~ii~~~~---------------------------p~~~v~~FGS 53 (384)
T 3hj4_A 3 AKREFIRGMMAHYRASLPPPEH--SVVIHELQKRVLDIGMLAV---------------------------NKAHVELFGS 53 (384)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTH--HHHHHHHHHHHHHHHHHHS---------------------------TTCEEEEESH
T ss_pred CHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEEEE
T ss_conf 2667899999999973999899--9999999999999999878---------------------------9967999514
Q ss_pred ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH-HHH---HHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEE
Q ss_conf 30233347996335999627454674344665124667-759---99999853159998617871268996601599996
Q 001555 89 YSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKR-CLY---LCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYP 164 (1055)
Q Consensus 89 ~~l~t~~k~~~~VDl~v~mP~~~fq~KDylN~RY~~KR-A~Y---La~iA~~L~~~~~~~~v~~~~~~~d~~kPil~l~p 164 (1055)
+..|... ++-.+|+.|..|..- +++.. ..++ +.+ ++.++..+... .+..+.. -.++.||+...-
T Consensus 54 ~~tgl~l-p~SDiDlvI~~~~~~----~~~~~--~~~~~~~~~lrll~L~k~~~~~-~ie~V~i----i~ARVPIIKf~d 121 (384)
T 3hj4_A 54 HVSGFCT-PHSDADISLTYRNFS----PWLQG--MERVDEQNNKRMTRFGKEASAM-GMEDVRY----IRARIPVVQFTD 121 (384)
T ss_dssp HHHSCCC-TTCCEEEEEECTTCC----GGGTT--CHHHHHHHHHHHHHHHHHHHHH-TCEEEEE----ECSSSCEEEEEC
T ss_pred CCCCCCC-CCCCEEEEEECCCCC----CCCCC--CCHHHHHHHHHHHHHHHHCCCC-CEEEEEE----CCCCCCEEEEEE
T ss_conf 5578989-999856999637876----42232--1105678899999997304337-7058733----486457799998
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHH-HHHH
Q ss_conf 988889997099996248976664334765688657788999988976521334103748999999998219388-9999
Q 001555 165 AVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE-LGEA 243 (1055)
Q Consensus 165 ~~~~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~-f~dA 243 (1055)
. .++..+.|-. || ....+|+ +++....+..|. ++.-
T Consensus 122 ~-----~tgi~~DIS~---------------nn-----------~~gi~ns------------~ll~~y~~~~p~rlr~L 158 (384)
T 3hj4_A 122 G-----VTGIHCDVSI---------------GN-----------IGGVENS------------KILCAIRQVFPDFYGAY 158 (384)
T ss_dssp T-----TTCCEEEEEE---------------CC-----------HHHHHHH------------HHHHHHHHTSHHHHHHH
T ss_pred C-----CCCEEEEEEE---------------CC-----------CCHHHHH------------HHHHHHHHCCCHHHHHH
T ss_conf 6-----8890798996---------------26-----------5048999------------99999874286989999
Q ss_pred HHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCC-----------------------------------H
Q ss_conf 9999999974277767-888426999999999941035486774-----------------------------------9
Q 001555 244 LILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMK-----------------------------------A 287 (1055)
Q Consensus 244 ~~LlkvWl~QRg~~~~-~~gf~~f~~s~ll~~L~~~~~l~~~~S-----------------------------------s 287 (1055)
++++|.|+++||++.. .||+++|.|.+|+++-+|...+-+... +
T Consensus 159 vllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~s 238 (384)
T 3hj4_A 159 IHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEK 238 (384)
T ss_dssp HHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999999983899766899408999999999994389898646532248854356607666540378876767888155
Q ss_pred -----HHHHHHHHHHHHCCCCCCCCEEECCCCCC----------------------------------CCCHHHH-----
Q ss_conf -----99999999998338887873430689999----------------------------------9984678-----
Q 001555 288 -----LQILRVVLDFIATSKLWNRGLYFPPKGQI----------------------------------GVSKEEK----- 323 (1055)
Q Consensus 288 -----yQifr~~l~fLa~~d~~~~~i~~~~~~~~----------------------------------~~~~~~~----- 323 (1055)
+|++..++.|-+.-||.+..|.+...+.. ..+....
T Consensus 239 LgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 318 (384)
T 3hj4_A 239 LGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQ 318 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99887779999999862448888779951776665531011121231004035402466540356678889875334567
Q ss_pred ---HHHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCC
Q ss_conf ---766614998884899842523479988899999999999996420-38786312223
Q 001555 324 ---LQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDK-CGDGGFEETFL 379 (1055)
Q Consensus 324 ---~~f~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~Ld~-~~~d~F~~lFl 379 (1055)
.+-...++.+.=|--.++|..-+++.+....+|.|-+++-.++-+ ...-.|+++|-
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (384)
T 3hj4_A 319 NETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESELKFDEVFR 378 (384)
T ss_dssp HHHHTSCSSSSCCBBCTTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTGGGCCHHHHTC
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 521005666625522000112301031764005999999999999856313646999851
No 10
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=1.00 E-value=1 Score=71.27 Aligned_cols=275 Identities=13% Similarity=0.112 Sum_probs=153.6
Q ss_pred CCCEEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--C-CCCCEEEECCCCC
Q ss_conf 884026730030-23334799633599962745467434466512466775999999853159--9-9861787126899
Q 001555 79 KPKTFKIGGSYS-INCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSS--P-SFDKVEWSAMQNE 154 (1055)
Q Consensus 79 ~P~~v~vvGS~~-l~t~~k~~~~VDl~v~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~--~-~~~~v~~~~~~~d 154 (1055)
+-..|.+.||+. .|. .-|+-.||+.+.++...+.+ .+-+..+-.|++.|++. + .+.+++ .-..
T Consensus 57 p~a~v~~FGS~v~~Gl-~lp~SDiDl~~~~~~~~~~~---------~~~~~~~~~l~~~L~~~~~~~~~~~v~---~I~~ 123 (468)
T 2b4v_A 57 PDAKVYCCGSMVTYGQ-MERGSDLDLACMFDDPYPSH---------EVQAKRTDKLRTVIKRYVPHYLRNNLL---GLTE 123 (468)
T ss_dssp TTCEEEEETHHHHHSS-CBTTCCEEEEEECSSSSCCH---------HHHHHHHHHHHHHHHTTSCHHHHTTEE---EECS
T ss_pred CCCEEEEEECCHHCCC-CCCCCCEEEEEECCCCCCCC---------HHHHHHHHHHHHHHHHHCCCCCCCEEE---ECCC
T ss_conf 9948998417310278-99998636898348877661---------135778999999999722466521058---6157
Q ss_pred CCEEEEEEEECCCC----------C-------------------------------------------CCCCEEEEEEEC
Q ss_conf 66015999969888----------8-------------------------------------------999709999624
Q 001555 155 ARKPVLVVYPAVKS----------V-------------------------------------------EAPGFFVRIIPT 181 (1055)
Q Consensus 155 ~~kPil~l~p~~~~----------~-------------------------------------------~~~~~~iRi~~~ 181 (1055)
++.||+.+.-...+ . ...+|.|-+-..
T Consensus 124 ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~ 203 (468)
T 2b4v_A 124 ARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCT 203 (468)
T ss_dssp SSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEES
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 87436999954665321111233333323221000001111111221000001100211222212234565543013215
Q ss_pred C-CCCCCCCCCCCCCCC----CCCCCC-CCCCCCCCCCCHHHHHCCC----HHHHHHHHHHHHHCHHH-HHHHHHHHHHH
Q ss_conf 8-976664334765688----657788-9999889765213341037----48999999998219388-99999999999
Q 001555 182 A-ASLFNIAKLNLKRNN----VRAFNQ-DGIPRATPKYNSSILEDMF----LEDNAEYVEKTISRWKE-LGEALILLKVW 250 (1055)
Q Consensus 182 ~-~~~F~~~rl~P~rnn----vR~~~~-~~~~~pTP~YNssil~D~~----~~~~l~~l~~~~~~~~~-f~dA~~LlkvW 250 (1055)
- .+.....+..|+.|- .|.... ..-..-=+.--+.|-.|.. -..+.+++....+..|. ++..++++|.|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DISfn~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~W 283 (468)
T 2b4v_A 204 SKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDISFVGYGVKNSYLIRHYLHNGPVAARHTAMAVKAW 283 (468)
T ss_dssp SHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSCEEEESCSHHHHHHHHHHHHHHHSCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 64102221001343210122322221223322224654566279974464699999999999843839899999999999
Q ss_pred HHHCCCCCC-CCCCHHHHHHHHHHHHHHCCC---------------CCC-----------CCCHHHHHHHHHHHHH-CCC
Q ss_conf 974277767-888426999999999941035---------------486-----------7749999999999983-388
Q 001555 251 ARQRSSIYV-HDCLNGYLISILLSYLVSLDK---------------INN-----------SMKALQILRVVLDFIA-TSK 302 (1055)
Q Consensus 251 l~QRg~~~~-~~gf~~f~~s~ll~~L~~~~~---------------l~~-----------~~SsyQifr~~l~fLa-~~d 302 (1055)
+++||++.. .||+++|.|.+|+.+-+|..+ +.. ..+--+++..++.|-+ ..|
T Consensus 284 ak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd 363 (468)
T 2b4v_A 284 GKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFD 363 (468)
T ss_dssp HHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99869997467980289999999999986276777785346646556666677851246856799999999999703068
Q ss_pred CCCCCEEECCCCCCCCCHHHHHHHH--------HCCCEEEECCCC-----CEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8787343068999999846787666--------149988848998-----425234799888999999999999964203
Q 001555 303 LWNRGLYFPPKGQIGVSKEEKLQYK--------EAFPVVICDPSA-----QVNLAFRMTSVGFCELQDEAASTLQCMDKC 369 (1055)
Q Consensus 303 ~~~~~i~~~~~~~~~~~~~~~~~f~--------~~f~vvf~D~sg-----~~Nl~~~~t~~s~~~L~~eA~~tl~~Ld~~ 369 (1055)
|.+.+|.+... ...+... ..|. ..++...-||-- ..|+...++...++.++.|.+.+..+|...
T Consensus 364 ~~~~vISir~g--~~~~K~~-~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~ 440 (468)
T 2b4v_A 364 YEREVVSLNRN--RRSYRSD-IGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERF 440 (468)
T ss_dssp TTTEEBCSSSS--SCEEHHH-HTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEECCC--CCEECCC-CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89857984489--5035410-14565445567775438998999887778846698889899999999999999999863
Done!