BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001556
(1054 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96SB8|SMC6_HUMAN Structural maintenance of chromosomes protein 6 OS=Homo sapiens
GN=SMC6 PE=1 SV=2
Length = 1091
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 292/1065 (27%), Positives = 542/1065 (50%), Gaps = 70/1065 (6%)
Query: 19 AGTITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA 77
G I + L+NFMCHS L + G VNF+ G NGSGKSA+LTAL + G RA T R +
Sbjct: 45 VGIIESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGS 104
Query: 78 TLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRV 136
+LK F+K G + A + + L+NRG+DAFK ++G+SI+I++ I+ + + + LK G V
Sbjct: 105 SLKGFVKDGQNSADISITLRNRGDDAFKASVYGNSILIQQHISIDGSRSYKLKSATGSVV 164
Query: 137 ASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKF----KATLLQQVNDLLQ 192
++RK+EL+ ++DHFNI V+NP +++Q+ S++FL S N+ DK+ KAT L+Q+ +
Sbjct: 165 STRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQMKEDYS 224
Query: 193 SIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVY 252
I + + + E + +++ E + + +++ + + +L+ LK ++AW+ V
Sbjct: 225 YIMETKERTKEQIHQGEERLTELKRQCVEKEERFQSIAGLSTMKTNLESLKHEMAWAVVN 284
Query: 253 DVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVR- 311
++++QL I+ +DR R K++ + L +K +I +EK SE
Sbjct: 285 EIEKQLNAIRDNIKIGEDRAARLDRKMEEQQVRLNEAE----QKYKDIQDKLEKISEETN 340
Query: 312 -RRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLE-------QQVHDIQEQH 363
R + + + K++ E E++ N S +N K L+ +++ ++++
Sbjct: 341 ARAPECMALKADVVAKKRAYNEAEVLYNRS-----LNEYKALKKDDEQLCKRIEELKKST 395
Query: 364 VRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDY 423
++ + E E + K+ L+ + A + + +E + + K+K E +I E D
Sbjct: 396 DQSLEPERLERQKKISWLKERVKAFQNQENSVNQEIEQFQQAIEKDKEEHGKIKREELDV 455
Query: 424 DKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIE---RHHHKFKSPPIGPIGSHVT 480
+ +++EL+ +T+++ FG + V +LL AI+ R H F P+GP+G+ +
Sbjct: 456 KHALSYNQRQLKELKDSKTDRLKRFGPN-VPALLEAIDDAYRQGH-FTYKPVGPLGACIH 513
Query: 481 LVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCARE---ANYNHLQIIIYDFSRPRL 537
L + + A A+E + LL A+ +H D +L+ + + II+ +F
Sbjct: 514 LRDPE-LALAIESCLKGLLQAYCCHNHADERVLQALMKRFYLPGTSRPPIIVSEFRNEIY 572
Query: 538 SLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRIS-N 596
+ H H PT L+ L+ DN V N L+DM E +L+++ V +AV Q+ N
Sbjct: 573 DVRHRAAYHPDFPTVLTALEIDNAVVANSLIDMRGIETVLLIKNNSVARAVMQSQKPPKN 632
Query: 597 LKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAA-------LHVQE 649
+E +T DG ++F+ G + + R L D +I DLE L++Q+
Sbjct: 633 CREAFTADGDQVFA-GRYYS----SENTRPKFLSRDVDSEISDLENEVENKTAQILNLQQ 687
Query: 650 EAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSA 709
K + +EE L+ Q H + +K + R +S+ ++++ + D
Sbjct: 688 HLSALEKDIKHNEELLKRCQLHYKELKMKI----RKNISEIRELENIEEHQSVDIATLED 743
Query: 710 SAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFE 769
A + S+ + ++E +++++ +E L+ EAE K + +K L E A D
Sbjct: 744 EAQENKSK-MKMVEEHMEQQKENMEHLKSLKIEAENKYDAIKFKINQLSELADPLKDELN 802
Query: 770 AAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVIC 829
A+ E+ ++ + E ++ + D + + +E + + +ELE + +A IC
Sbjct: 803 LADSEVDNQKRGKRHYEEKQKEHLDTLNKKK----RELDMKEKELE----EKMSQARQIC 854
Query: 830 PES-EIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQ 888
PE E+E L ++NRL Q+++ E + + E +R Y+E L
Sbjct: 855 PERIEVEKSASI-------LDKEINRLRQKIQAEHASHGDREEIMRQ-YQEARETYLDLD 906
Query: 889 QTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKT 948
+ ++ ++ E ++ R+ +Q+ L + F+ L ++ GK+N +++ +T
Sbjct: 907 SKVRTLKKFIKLLGEIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNET 966
Query: 949 LSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAIS 1008
LSI V+ P + + + D R LSGGERSFST+CF L+L + E+PFR +DEFDV+MD ++
Sbjct: 967 LSISVQ-PGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVN 1025
Query: 1009 RKISLDTLVDFALAQG-SQWIFITPHDVGLVKQGERIKKQQMAAP 1052
R+I++D ++ A +Q Q+I +TP + + + I+ +M+ P
Sbjct: 1026 RRIAMDLILKMADSQRFRQFILLTPQSMSSLPSSKLIRILRMSDP 1070
>sp|Q924W5|SMC6_MOUSE Structural maintenance of chromosomes protein 6 OS=Mus musculus
GN=Smc6 PE=2 SV=1
Length = 1097
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 302/1082 (27%), Positives = 543/1082 (50%), Gaps = 104/1082 (9%)
Query: 19 AGTITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA 77
G I ++L NFMCHS L + G VNF+ G NGSGKSA+LTAL + G +A T R +
Sbjct: 51 VGIIESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGS 110
Query: 78 TLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRV 136
+LK F+K G + A + + L+NRG+DAF+ ++GDSI++++ I+ + + + LK +G V
Sbjct: 111 SLKGFVKAGQNSADISITLRNRGDDAFRANVYGDSIVVQQHISVDGSRSYKLKSEKGTVV 170
Query: 137 ASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKF----KATLLQQVNDLLQ 192
++RK+EL+ ++DHFNI V+NP +++Q+ S++FL S N+ DK+ KAT L+Q+ +
Sbjct: 171 STRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQMKEDYS 230
Query: 193 SIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVY 252
I + + + E + +++ E + + +N+ + + +L+ LK ++AW+ V
Sbjct: 231 YIMETKERTKEQINQGEERLTELKRQCLEKEERFQNIAGLSTMKTNLEYLKHEMAWAVVN 290
Query: 253 DVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVR- 311
++++QL I+ ++R + K++ + L KK +I +EK SE
Sbjct: 291 EIEKQLNAIRDNIKIGEERAAKLDRKMEEQQVRLNDAE----KKYKDIQDKLEKISEETN 346
Query: 312 -RRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGL----EQQVHDIQEQHVRN 366
R + + + + + + E++ N S +N K L EQ I+E
Sbjct: 347 ARAPECMALKTDVIARTRAFNDAEVLYNRS-----LNEYKALKKDGEQLCKRIEELKKST 401
Query: 367 TQAEESE----------IEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRI 416
Q+ E E ++ K+K LQ + N +E + + K+K E R+
Sbjct: 402 DQSLEPERLERQKRICWLKEKVKALQDQEHTVN-------QEAEQFEQAIEKDKQEHGRV 454
Query: 417 SDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHK--FKSPPIGP 474
E + + +++EL+ +T+++ FG V +LL AI+ + + F PIGP
Sbjct: 455 RKEDIEVRHALNYNQRQLKELKDSKTDRLKRFGP-HVPALLEAIDDAYRRRQFTHKPIGP 513
Query: 475 IGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCARE---ANYNHLQIIIYD 531
+G+ + L + + A A+E + LL A+ +H D +L+ ++ + QII+ +
Sbjct: 514 LGACIHLRDPE-LALAIESCLKGLLQAYCCHNHADERVLQSLMKKFYPPGTSRPQIIVSE 572
Query: 532 FSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFE 591
F + H + PT L+ L+ DN V N L+DM S E +L+++ V +AV
Sbjct: 573 FRDEVYDVRLRAAYHPEFPTVLTALEIDNAVVANSLIDMRSIETVLLIKNNSVARAVMQS 632
Query: 592 QRIS-NLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERA------- 643
Q+ N +E +T DG ++F+ G + + R L D +I DLE
Sbjct: 633 QKPPKNCREAFTADGDQVFA-GRYYS----SESTRPKFLSRDVDSEISDLETEIENKKGH 687
Query: 644 ALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAAD 703
+ +Q+ K + +EE L+ Q H + +K + R +S+ ++++ + D
Sbjct: 688 IITLQQRLSALEKDIKRNEELLKRCQLHYKEIKMKI----RKNISEIRELENIEEHQSVD 743
Query: 704 AGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKE 763
I+ +++E +E +I ++ ++ +M + + +E+LK SL A+
Sbjct: 744 ---------------IATLEDEAEENKIKMQMVEKNMEQQKENMENLK----SLKIEAEN 784
Query: 764 EVDTFEAAEKELMEI------EKNLQTSESE-----KAHYEDVMRTRV-VGAIKEAESQY 811
+ DT + +L E+ E NL SE + K HYED + + K E
Sbjct: 785 KYDTIKLKINQLSELADPLKDELNLADSEVDSQKRGKQHYEDKQKEHLDTLNKKRRELDM 844
Query: 812 RELELLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIE 871
+E EL Q+ +A ICPE IE + L ++NRL Q+++ E + + E
Sbjct: 845 KEKEL--QEKMSQARQICPE-RIEV-----KKSASILDKEINRLRQKIQAEHASHGDR-E 895
Query: 872 DLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHL 931
++ Y+E L + R ++ E + R+ +Q+ L + F+ L
Sbjct: 896 EIMKQYQEARETYLDLDNKVRTLRRFIKLLEEIMTHRYKTYQQFRRCLTLRCKLYFDNLL 955
Query: 932 GKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTE 991
++ GK+N +++ +TLSI V+ P + + ++ D R LSGGERSFST+CF L+L + E
Sbjct: 956 SQRAYCGKMNFDHKNETLSITVQ-PGEGNKASFNDMRALSGGERSFSTVCFILSLWSIAE 1014
Query: 992 APFRAMDEFDVFMDAISRKISLDTLVDFALAQG-SQWIFITPHDVGLVKQGERIKKQQMA 1050
+PFR +DEFDV+MD ++R+I++D ++ A +Q Q+I +TP + + + I+ +M+
Sbjct: 1015 SPFRCLDEFDVYMDMVNRRIAMDMILKMADSQRFRQFILLTPQSMSSLPSSKLIRILRMS 1074
Query: 1051 AP 1052
P
Sbjct: 1075 DP 1076
>sp|Q6P9I7|SMC6_XENLA Structural maintenance of chromosomes protein 6 OS=Xenopus laevis
GN=smc6 PE=2 SV=1
Length = 1128
Score = 363 bits (931), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 292/1085 (26%), Positives = 557/1085 (51%), Gaps = 91/1085 (8%)
Query: 7 SSESGYGPQRSGAGTITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIA 65
+S+SG G G I + L NFMCHS L G VNF+ G NGSGKSA+LTAL +
Sbjct: 76 ASQSGTG----DVGIIESIFLRNFMCHSMLGPFRFGPNVNFVIGNNGSGKSAVLTALIVG 131
Query: 66 FGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTST 125
G +A T R +++K F+K G ++A + + L+NRG+DA+KP++FG+SI +++R+T S
Sbjct: 132 LGGKAAITNRGSSIKGFVKEGQTFAEISITLRNRGQDAYKPDVFGNSITVQQRLTTDGSR 191
Query: 126 TV-LKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKF----K 180
T LK G V+++K+EL ++DHFNI V+NP +++Q+ S+ FL S N+ DK+ K
Sbjct: 192 TYKLKSATGAVVSNKKEELTAILDHFNIQVDNPVSVLTQEMSKHFLQSKNESDKYKFFMK 251
Query: 181 ATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQ 240
AT L+Q+ + I ++ V ++ +E + + + +++ + E+ + L+
Sbjct: 252 ATQLEQMKEDYSYIMETKSRTHDQVENGGERLRDLRQECIQKEERFKSIASLGEMKEKLE 311
Query: 241 RLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEI 300
LK K+AW+ V + ++Q+K +I + R + + KI+ + + + F K+ E+
Sbjct: 312 DLKNKMAWALVTESEKQIKPFIEQISTEEGRTVKYEQKIEECQGKVINAEEKFRAKQEEL 371
Query: 301 AVMVEKT-----------SEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRV 349
+ ++ +V++++ +S L + ++EL+ L R+ + K R+
Sbjct: 372 DKITQEAVALKPQGIGLKEDVQKKRKSYNESEVLYNRHRMELK-RLERDAEQLHK---RI 427
Query: 350 KGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKE 409
+ L++ + E Q E ++I ++K L + N + + + + + K
Sbjct: 428 EELKKSADNDSESEKMARQKEINQIRERMKALHDKDITTNQQIHQFQ-------QAIEKY 480
Query: 410 KNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHH--KF 467
K E RI +E + ++ + + +++EL + +T+++ FG + + +LL AI+ +F
Sbjct: 481 KEERARIGNEERNIKQRLEQHKRQLKELHESKTDRLKRFGQN-MPALLAAIDEADKLGRF 539
Query: 468 KSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGC-ARE-ANYNHL 525
+ P+GP+G+ + L + + A AVE + L+ AF +H+D +L+ +RE
Sbjct: 540 RKKPVGPLGACIHLKDQE-LALAVESCLKGLMFAFCCDNHQDERMLQNIMSREYPRGRRP 598
Query: 526 QIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVG 585
QII+ +F + H HPT L+ L+ D+P V N L+DM E ++++ D
Sbjct: 599 QIIVNEFIDHVYDVRQRATFHPDHPTVLTALEIDHPVVTNCLIDMRGIETILIIKGKDEA 658
Query: 586 KAVAFEQRIS--NLKEVYTLDG-----HKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIK 638
+ + ++R N +E +T +G ++ +S S + L L+R + +++++
Sbjct: 659 REI-MQKRAPPRNCREAFTGEGDQVYTNRYYSSDSRRATL-LSRDVEAE--ISHLEKELR 714
Query: 639 DLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKN 698
+ Q+ AQ K +++E L+ Q H N K++ R + + ++V+
Sbjct: 715 NFGSQMATFQQRAQSVDKDIKENEGILR--QYH--NSKKQIQIDLRPLLERISELENVEE 770
Query: 699 SFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLC 758
+ D A + +++ I +++E++ + + L+ + AE E++K S+
Sbjct: 771 QPSIDIATLEGEAEENLNK-IELVKQEVELAKEKMGNLKSFLTTAEINYEEIKKKISSVA 829
Query: 759 ESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMR---TRVVGAIKEAESQYRELE 815
E A E +++L +++ ++ + + HYE+ ++ R+ +E ++ +ELE
Sbjct: 830 EVA-------EPVKEDLHRVDQEVENCKRHRKHYEEKLKEHLDRIQKRKEEVAAKEQELE 882
Query: 816 LLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRM 875
+ +A ICPE IE T L ++NRL +++ E + E ++
Sbjct: 883 V----KISQAKCICPE-RIEV-----SRTARSLDTEINRLREKINSEEVLHGNREEIIKQ 932
Query: 876 LYEEKEHKILRKQQTYQAFREKVRACR-------EALDSRWGKFQRNATLLKRQLTWQFN 928
+E KE YQ KV+ + E + R+ +Q+ L + F+
Sbjct: 933 YHEAKER--------YQDVEGKVKHLKRFIKLLDEIMAQRYKSYQQFRRCLTFRCKIYFD 984
Query: 929 GHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHE 988
L ++ SGKIN +++ +TLSI V+ P + + + + D + LSGGERSFST+CF L+L
Sbjct: 985 SLLSQRAYSGKINFDHKNETLSITVQ-PGEGNKAALSDMKCLSGGERSFSTVCFILSLWS 1043
Query: 989 MTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQG-SQWIFITPHDVGLVKQGERIKKQ 1047
+ E+PFR +DEFDV+MD ++R+IS+D ++ A +Q Q+I +TP ++ + ++
Sbjct: 1044 IAESPFRCLDEFDVYMDMVNRRISMDMMLSMADSQRFRQFILLTPQNMSSLPSTSLVRIL 1103
Query: 1048 QMAAP 1052
+M P
Sbjct: 1104 RMKDP 1108
>sp|Q802R8|SMC6_TAKRU Structural maintenance of chromosomes protein 6 OS=Takifugu rubripes
GN=smc6 PE=2 SV=1
Length = 1090
Score = 342 bits (878), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 292/1080 (27%), Positives = 538/1080 (49%), Gaps = 97/1080 (8%)
Query: 17 SGAGTITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQR 75
S G + + L NFMCH++L G VNFI G+NGSGKSAILT L +A G A+ T R
Sbjct: 50 SDVGIVKSITLNNFMCHANLGPFAFGSNVNFIVGKNGSGKSAILTGLIVALGGNAQATNR 109
Query: 76 AATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGK 134
++LK F+K G S+A+V + L N G+DA+KPE++G +I+I+++IT E T LK G
Sbjct: 110 GSSLKGFVKEGESFAVVSITLNNIGKDAYKPEVYGQAIVIDQKITREGIRTYKLKSQSGH 169
Query: 135 RVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS--GNDKDKF--KATLLQQVNDL 190
++++K++L+ ++D++NI V NP I++Q+ S+ FLHS G +K KF KAT L+Q+ D
Sbjct: 170 IISTKKEDLVTILDYYNIQVNNPVTILTQEMSKYFLHSKGGAEKYKFFMKATQLEQMKDD 229
Query: 191 LQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSW 250
I + + V + +K +++ E + + +++ V E+ L+ LKK++AW+
Sbjct: 230 FVHIKSTKSVTVDKVEQHSECLKDLKRDYLEKEDRYKSLASVNEMYTKLEELKKQMAWAL 289
Query: 251 VYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEV 310
V +V+++ + K+E + + K+D KKK E+A +K S
Sbjct: 290 VGEVEKEFEPMKEKLESDRCATNKFNEKVDE------------WKKKVEVAEGKQKQS-- 335
Query: 311 RRRKDELQQSISLATKEKLELEGELVRNTSYMQK---MVNRVKGL--------EQQVHDI 359
+ +E+ Q +S + E + E+ R + ++ V+R K + Q I
Sbjct: 336 HEQLEEITQQVSELQSKCTEFKTEVQRRNADLKSCEVTVHRHKAILRDLEKDKAQLSSKI 395
Query: 360 QEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIR----- 414
+ + +QA +E +A+++ + +I+AA L + S L +++ + ++ R
Sbjct: 396 NDLSLSISQATGAESQARMERI-AQIEAA---LEDLTHHTSTLGQQIEQYQHSYRHAIEG 451
Query: 415 --RISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHK--FKSP 470
++ E+E K R +++ ++ ++N++ F GD++ +LL AI+ H K FK
Sbjct: 452 QGKMKRELEGLQKSIDANRRQLQSMESSRSNRLQRF-GDQMPALLAAIDEAHKKGQFKHR 510
Query: 471 PIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREA-NYNHLQIII 529
P GP+G ++L + + A ++E + L+ AF ++ D +L+ + + II
Sbjct: 511 PRGPLGYLISLKDPE-LALSIEICLKNLVQAFTCDNYDDERVLKSLMTKVLQHGRRPAII 569
Query: 530 YDFSRPRL-SLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRD-YDVGKA 587
P++ + + H +P+ L L+ ++P V N L+D + E +L+++ + +
Sbjct: 570 TSRFFPKVHDVSVRAVNHPDYPSVLQALEIEDPVVANCLIDQRAIECILLIKNRTEARRV 629
Query: 588 VAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLER----- 642
+ N ++++G ++F+ S + R L +E I+ L+R
Sbjct: 630 MQGRNPPQNCTSAFSVEGDQIFTNRSYTA-----DQTRANFLSKDVEEGIRHLKREMETQ 684
Query: 643 --AALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSF 700
A H+Q++ + K ++++ L+ Q Q+ + E M +L D+KN
Sbjct: 685 KVQAAHIQQQIRSTDKNISENQDLLRRTQTEQK-------TTEVKTMKLQLELTDLKN-- 735
Query: 701 AADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLS--FQSLC 758
P + + E+ N ++E ++ + +++ + EA+ K + KL+ F SL
Sbjct: 736 ---VEEPQSEDLAELKSAFENAEQEYKQHKQLIDT---AAEEADVKKVETKLTPLFTSLS 789
Query: 759 ESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLR 818
+ F ++EL + ++ + + + HYE+ R + +IK E+ E
Sbjct: 790 CNILWVHCLFVLLQEELSKTDQEVMKCKHHEKHYEE-RRNAHLCSIKTLENNVASKEKEL 848
Query: 819 QDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYE 878
Q+S KA ICPE + T L ++ RL ++ + + E +R Y
Sbjct: 849 QESIAKAKEICPEQLVVR------RTARSLDVEITRLKVKIATQREHQGDREEIVRE-YH 901
Query: 879 EKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLT----WQFNGHLGKK 934
E K Q + ++ +D R + T+L+R L+ + F+ L ++
Sbjct: 902 EALESYANKAQQIKNLNNFIKCLDRVMDQRLYAY----TVLRRFLSARCKYYFDSMLAQR 957
Query: 935 GISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPF 994
G +G + +++ +TLSI V+ P + +++ D R LSGGERSFST+CF L+L +TEAPF
Sbjct: 958 GFTGNMTFDHKNETLSISVQ-PGQGNKADLNDMRCLSGGERSFSTVCFVLSLWPITEAPF 1016
Query: 995 RAMDEFDVFMDAISRK-ISLDTLVDFALAQG-SQWIFITPHDVGLVKQGERIKKQQMAAP 1052
R +DEFDV+MD +R+ + + A +Q Q IF+TP + + + RI Q+ P
Sbjct: 1017 RCLDEFDVYMDMANRRNTQRQSGLKMATSQKIRQLIFLTPQSMSSLPECRRIHIVQLNDP 1076
>sp|P53692|SMC6_SCHPO Structural maintenance of chromosomes protein 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smc6 PE=1 SV=1
Length = 1140
Score = 314 bits (804), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 299/1110 (26%), Positives = 529/1110 (47%), Gaps = 180/1110 (16%)
Query: 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
G I + L NFMCH SL+I G +NF+ G NGSGKSAILT L I G +A T RA
Sbjct: 94 VGVIECIHLVNFMCHDSLKINFGPRINFVIGHNGSGKSAILTGLTICLGAKASNTNRAPN 153
Query: 79 LKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRI-TESTSTTVLKDHQGKRVA 137
+K +K G +YA + V + NRG +A++PEI+G SI IER I E +S L+ G ++
Sbjct: 154 MKSLVKQGKNYARISVTISNRGFEAYQPEIYGKSITIERTIRREGSSEYRLRSFNGTVIS 213
Query: 138 SRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKF----KATLLQQVND---- 189
+++ EL + DH + ++NP I++QD +R+FL + + K+K+ K L+Q+ +
Sbjct: 214 TKRDELDNICDHMGLQIDNPMNILTQDTARQFLGNSSPKEKYQLFMKGIQLKQLEENYSL 273
Query: 190 LLQSIYNHLNKGDALVLELEAT----IKPTEKELSELQRKIRNMEHVEEITQDLQRLKKK 245
+ QS+ N N VL + T + E+E L + R E++ + L++ K +
Sbjct: 274 IEQSLINTKN-----VLGNKKTGVSYLAKKEEEYKLLWEQSRETENLHNL---LEQKKGE 325
Query: 246 LAWSWVYDVDRQL----------------KEQTL------------KIEKLKDRIPRCQA 277
+ W+ V +V+++L ++ L KI ++ I R +
Sbjct: 326 MVWAQVVEVEKELLLAEKEFQHAEVKLSEAKENLESIVTNQSDIDGKISSKEEVIGRAKG 385
Query: 278 KIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLAT------KEKLEL 331
+ D+ S E + F ++E+ ++V +K ++Q SI+ A +E+L
Sbjct: 386 ETDTTKSKFEDIVKTFDGYRSEM-------NDVDIQKRDIQNSINAAKSCLDVYREQLNT 438
Query: 332 EGELVRNT--SYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAAN 389
E N S ++K N L++++ D+ EQ V E+E+K +L
Sbjct: 439 ERARENNLGGSQIEKRANESNNLQREIADLSEQIV--------ELESKRNDLH------- 483
Query: 390 ITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFG 449
S + E L+ L+K+ + +ISD+ E ++ L+ Q +KV+AFG
Sbjct: 484 ---SALLEMGGNLTSLLTKKDSIANKISDQSE-----------HLKVLEDVQRDKVSAFG 529
Query: 450 GDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKD 509
+ + LL+ I R +F+ PP GP+G ++T V W +E+ +G ++N FIV H D
Sbjct: 530 KN-MPQLLKLITR-ETRFQHPPKGPMGKYMT-VKEQKWHLIIERILGNVINGFIVRSHHD 586
Query: 510 ALLLRGCAREANYNHLQIII-----YDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVI 564
L+L+ R++N H +++ +D+S P +++PT L +++ D+ V+
Sbjct: 587 QLILKELMRQSNC-HATVVVGKYDPFDYSSGE--------PDSQYPTVLKIIKFDDDEVL 637
Query: 565 NVLVDMGSAERQVLVRDYDVGKAVAFEQR-ISNLKEVYTLD------GHKMFS---RGSV 614
+ L++ E+ +L+ D +A A+ +R I+N+ + Y LD G ++ S +
Sbjct: 638 HTLINHLGIEKMLLIEDRR--EAEAYMKRGIANVTQCYALDPRNRGYGFRIVSTQRSSGI 695
Query: 615 QTILPLNRRLRTGRLCGSYDEK----IKDLER----AALHVQEEAQQCRKRKRDSEERLQ 666
+ P NR R G + E + DL++ A+ + E + K KRD Q
Sbjct: 696 SKVTPWNRPPRIGFSSSTSIEAEKKILDDLKKQYNFASNQLNEAKIEQAKFKRDE----Q 751
Query: 667 DLQQHQQNVKRRCFSAER--NRM-SKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQ 723
L + + +K+R R N + S+EL+ D +++I ++
Sbjct: 752 LLVEKIEGIKKRILLKRREVNSLESQELSVLD--------------------TEKIQTLE 791
Query: 724 EEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQ 783
I E E LE + +A+ + ++ + + + E + + + + L ++ L
Sbjct: 792 RRISETEKELESYAGQLQDAKNEEHRIRDNQRPVIEEIRIYREKIQTETQRLSSLQTELS 851
Query: 784 TSESEKAHYE-DVMRTR-----VVGAIKEAESQYRELELLRQDSCRKASVICPESEIEAL 837
EK + E D+ R R ++E E++ + + D KA+ C ++
Sbjct: 852 RLRDEKRNSEVDIERHRQTVESCTNILREKEAKKVQCAQVVADYTAKANTRCERVPVQLS 911
Query: 838 GGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREK 897
+ E+L Q+ R Q +E + + +++ + + R Q QA E
Sbjct: 912 PAELDNEIERLQMQIAEWRNRTGVSVEQAAEDYLNAKEKHDQAKVLVARLTQLLQALEET 971
Query: 898 VRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQ 957
+R E W KF++ TL ++L F +L ++ +GK+ I ++E+ L V P
Sbjct: 972 LRRRNEM----WTKFRKLITLRTKEL---FELYLSQRNFTGKLVIKHQEEFLEPRV-YPA 1023
Query: 958 D---ASSSNVRD-----TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISR 1009
+ A++ N + +GLSGGE+SF+T+C L++ E P R +DEFDVFMDA++R
Sbjct: 1024 NRNLATAHNRHEKSKVSVQGLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFMDAVNR 1083
Query: 1010 KISLDTLVDFAL-AQGSQWIFITPHDVGLV 1038
+S+ +VD A + Q+IFITP D+G +
Sbjct: 1084 LVSIKMMVDSAKDSSDKQFIFITPQDMGQI 1113
>sp|Q12749|SMC6_YEAST Structural maintenance of chromosomes protein 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC6 PE=1 SV=1
Length = 1114
Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 273/1100 (24%), Positives = 524/1100 (47%), Gaps = 135/1100 (12%)
Query: 4 YRFSSESGYGPQ-----RSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAI 58
+R SS+ Q S +G I +V L NFMCH ++ELG +NFI G NGSGKSAI
Sbjct: 59 FRSSSDVATADQDNFLEESPSGYIKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAI 118
Query: 59 LTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERR 118
LTA+ I G +A T R ++LKD I+ GC A + + L N A++ IFG+ II+ER
Sbjct: 119 LTAITIGLGAKASETNRGSSLKDLIREGCYSAKIILHLDNSKYGAYQQGIFGNEIIVERI 178
Query: 119 IT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKD 177
I + ++ L+ GK ++++K+++ ++D+F++ V NP +SQD +R FL + +D
Sbjct: 179 IKRDGPASFSLRSENGKEISNKKKDIQTVVDYFSVPVSNPMCFLSQDAARSFLTASTSQD 238
Query: 178 KF----KATLLQQVN-DLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHV 232
K+ K TLLQ++ +LL + H + + + L LE +K + E + ++ +R +
Sbjct: 239 KYSHFMKGTLLQEITENLLYASAIHDSAQENMALHLE-NLKSLKAEYEDAKKLLRELNQT 297
Query: 233 EEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDC 292
++ + L+ K W +D + T + L++ I Q K+D
Sbjct: 298 SDLNERKMLLQAKSLW-----ID--VAHNTDACKNLENEISGIQQKVD------------ 338
Query: 293 FMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGL 352
E T ++R R++++++ S T + +++ +++ Y+ + + +
Sbjct: 339 ------------EVTEKIRNRQEKIERYTSDGTTIEAQIDAKVI----YVNEKDSEHQNA 382
Query: 353 EQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNE 412
+ + D++ + + ++ ++E ++ + + + ++DA N T++ ++EE L++++ +K++
Sbjct: 383 RELLRDVKSRFEKE-KSNQAEAQSNIDQGRKKVDALNKTIAHLEEE---LTKEMGGDKDQ 438
Query: 413 IRRISDEIEDYDKKCREIR----------------------SEIRELQQHQTNKVT---- 446
+R+ +++E ++K RE+ SE+R + + NK
Sbjct: 439 MRQELEQLEKANEKLREVNNSLVVSLQDVKNEERDIQHERESELRTISRSIQNKKVELQN 498
Query: 447 -AFGGDRVI--------SLLRAIERHHHKFKSPPIGPIGSHVTLVNG-DTWAPAVEQAIG 496
A G D + LLR IE+ ++F++P IGP+GS VT+ G + W ++++AI
Sbjct: 499 IAKGNDTFLMNFDRNMDRLLRTIEQRKNEFETPAIGPLGSLVTIRKGFEKWTRSIQRAIS 558
Query: 497 RLLNAFIVTDHKDALLLRGCAREANY-NHLQIIIY-----DFSRPRLSLPHHMLPHTKHP 550
LNAF+V++ KD L R R +++ I+ Y D+S+ R H +P
Sbjct: 559 SSLNAFVVSNPKDNRLFRDIMRSCGIRSNIPIVTYCLSQFDYSKGR--------AHGNYP 610
Query: 551 TTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRIS-NLKEVYTL----DG 605
T + L+ P + + VD+ ER VL+ D + +A F QR N+ +L G
Sbjct: 611 TIVDALEFSKPEIECLFVDLSRIERIVLIEDKN--EARNFLQRNPVNVNMALSLRDRRSG 668
Query: 606 HKMFSRGSVQTILPLNR-RLRTGRLCGSYDEKIKDLERAALHVQEEAQQCRKRKRDSEER 664
++ + T+ ++ RL+ + + +KDL +++E ++ + + EE+
Sbjct: 669 FQLSGGYRLDTVTYQDKIRLKVNSSSDNGTQYLKDL------IEQETKELQNIRDRYEEK 722
Query: 665 LQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFA--ADAGPPSASAVDEISQEISNI 722
L +++ + + R S + ++K + D G ++ + +QE
Sbjct: 723 LSEVRSRLKEIDGRLKSTKNEMRKTNFRMTELKMNVGKVVDTGILNSKINERKNQE---- 778
Query: 723 QEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNL 782
+ I E E+L + + + + +K + S + E D + ++++ + +
Sbjct: 779 -QAIASYEAAKEELGLKIEQIAQEAQPIKEQYDSTKLALVEAQDELQQLKEDINSRQSKI 837
Query: 783 QTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPESEIEALGGWDG 842
Q + + +YED + + IK+ E L+ Q + A C + IE + D
Sbjct: 838 QKYKDDTIYYEDKKKV-YLENIKKIEVNVAALKEGIQRQIQNACAFCSKERIENVDLPD- 895
Query: 843 STPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACR 902
T E++ +++++++ ++ S E++ L+E+ +K Q+ Y E +
Sbjct: 896 -TQEEIKRELDKVSRMIQKAEKSLGLSQEEVIALFEKCRNKYKEGQKKYMEIDEALNRLH 954
Query: 903 EALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSS 962
+L +R ++ F L + SG ++ + K+L I + D +
Sbjct: 955 NSLKARDQNYKNAEKGTCFDADMDFRASLKVRKFSGNLSFIKDTKSLEIYILTTNDEKAR 1014
Query: 963 NVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLV----D 1018
NV DT LSGGE+SFS + LA + + A+DEFDVFMD ++RKI +V D
Sbjct: 1015 NV-DT--LSGGEKSFSQMALLLATWKPMRSRIIALDEFDVFMDQVNRKIGTTLIVKKLKD 1071
Query: 1019 FALAQGSQWIFITPHDVGLV 1038
A +Q I ITP D+G +
Sbjct: 1072 IA---RTQTIIITPQDIGKI 1088
>sp|Q54I56|SMC6_DICDI Structural maintenance of chromosomes protein 6 OS=Dictyostelium
discoideum GN=smc6 PE=3 SV=1
Length = 1185
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 163/581 (28%), Positives = 309/581 (53%), Gaps = 37/581 (6%)
Query: 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
AG I + LENFMCH +++ VNFI G+NGSGKSA+L AL + G +A T R +
Sbjct: 146 AGIIESITLENFMCHRHFKLDFCSNVNFIAGENGSGKSAVLIALIVCLGAKAGFTNRGSK 205
Query: 79 LKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTV-LKDHQGKRVA 137
L D +K + A++ V+L+N+G++AFKPE +G S+IIERRI+ + S+ +KD+ GK V+
Sbjct: 206 LSDLVKAETNTAVITVKLRNQGQEAFKPEKYGKSVIIERRISRTGSSGYKVKDYNGKTVS 265
Query: 138 SRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFK----ATLLQQVNDLLQS 193
+ ++ +++ FNI ++NP I++QD SR+FL+S +DK+K AT L ++ +
Sbjct: 266 DKFNDVSLILEQFNIQIDNPMSILTQDTSRQFLNSAGPQDKYKSFLMATQLDKMTKDYTT 325
Query: 194 IYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYD 253
I H++K ++ + I+ EK++ E ++ ++++ + + + + K +LAWS+V +
Sbjct: 326 IREHIDKIKDMLSQKVVVIQELEKKVREYNKEYKDLQQMVGLERKISEFKNQLAWSFVVE 385
Query: 254 VDRQLKEQTLKIEKLKDR-----IPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTS 308
+R+ K + ++ + ++R I + I++ + +E + K +I ++
Sbjct: 386 SEREAKRKEKQVAEAEERSFDNDIRKVDETIETYNKSIEDI-------KKDIKEFTDQIK 438
Query: 309 EVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVR--N 366
++K+ + I +E+ +++ ++ N Q+ R Q +++I+E++ + N
Sbjct: 439 IQEQKKETNNREILTIEREEAKIQTQIEANNKKRQQRKQRRHLQLQSINEIKERNAQLAN 498
Query: 367 TQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKK 426
Q++ EI+ K ++ + +++A L + KE+ E L ++ R I+ ++ +++
Sbjct: 499 NQSKLDEIKKKGQQ-KLQLEARKEELIKEKEDLMRDRENLKRDHQNQRTITQQM---NRE 554
Query: 427 CREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDT 486
+R ++ L+ Q + A+G + L IE F PIGPIG + + N ++
Sbjct: 555 YEGLRVQLNNLRSTQKGENQAYGKG-MTDFLHKIEASRRNFSKLPIGPIGLSLKIKN-ES 612
Query: 487 WAPAVEQAIGR-LLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSR-PRLSLPHHML 544
WA A+E AI + L F+V D + L+ H I D+++ P + + +
Sbjct: 613 WAFAIESAISKATLRNFLVFSIPDGITLQKLG------HQFGIKVDYTKIPETTEVYKTV 666
Query: 545 PHTK-HP---TTLSVLQSDNPTVINVLVDMGSAERQVLVRD 581
H + P T L VL S + +IN L+D E+ L D
Sbjct: 667 EHDELDPSLATVLRVLDSPSHFIINFLIDTKKVEQIGLGND 707
>sp|O13710|SMC5_SCHPO Structural maintenance of chromosomes protein 5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smc5 PE=1 SV=3
Length = 1076
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 13/150 (8%)
Query: 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
G+I R++L NF+ + ++ G ++N I G NG+GKS I++A+CI G K RA
Sbjct: 22 GSIVRIKLVNFVTYDYCELFPGPYLNLIIGPNGTGKSTIVSAICIGLGWPPKLLGRAKEA 81
Query: 80 KDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASR 139
++FIK G + A +E+E+K R + +++ I R+I++ S++ R A
Sbjct: 82 REFIKYGKNTATIEIEMKYRDD---------ETVTITRQISQDKSSSF----SINREACA 128
Query: 140 KQELLELIDHFNIDVENPCVIMSQDKSREF 169
+ L+D FN+ + N C + QD+ EF
Sbjct: 129 TSSITSLMDTFNVQLNNLCHFLPQDRVAEF 158
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 12/115 (10%)
Query: 926 QFNGHLGKKGISGKINI----NYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLC 981
+F+ + G +G++ + +Y++ + I V+ ++ + R SGGERS ST+
Sbjct: 919 RFSKGMSGMGYAGEVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQ-SGGERSVSTIM 977
Query: 982 FALALHEMTEAPFRAMDEFDVFMDAISRKIS----LDTLVDFALAQGSQWIFITP 1032
+ L+L + APFR +DE + MD + ++ ++++ D A+ SQ+ +TP
Sbjct: 978 YLLSLQGLAIAPFRIVDEINQGMDPRNERVVHRHIVNSVCDNAV---SQYFLVTP 1029
>sp|Q5ZJY5|SMC5_CHICK Structural maintenance of chromosomes protein 5 OS=Gallus gallus
GN=SMC5 PE=2 SV=1
Length = 1065
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 13 GPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72
G RS G+I R+ +ENF+ + ++ G +N I G NG+GKS+I+ A+C+ +
Sbjct: 23 GKPRSVEGSIVRIYMENFLTYDICEVRPGPNLNMIIGANGTGKSSIVCAICLGLAGKPSF 82
Query: 73 TQRAATLKDFIKTGCSYAMVEVELKNRGEDAFK-PEIFGDSIIIERRITESTSTTVLKDH 131
RA + F+K GC +VE+EL FK PE +III R I T+T+ H
Sbjct: 83 LGRAEKVGLFVKQGCLKGLVEIEL-------FKVPE----NIIITREIQVVTNTSTW--H 129
Query: 132 QGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169
+++ + K + E + NI V+N C + QDK EF
Sbjct: 130 INRKLTTLKT-VEEQVAALNIQVDNLCQFLPQDKVGEF 166
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 971 SGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQG-SQWIF 1029
SGGE+S ST+ + +AL E+ PFR +DE + MD ++ + + V A + SQ+
Sbjct: 956 SGGEKSVSTVLYLMALQELNRCPFRVVDEINQGMDPVNERRVFEMFVKTACKESTSQYFL 1015
Query: 1030 ITP 1032
ITP
Sbjct: 1016 ITP 1018
>sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens
GN=SMC5 PE=1 SV=2
Length = 1101
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 22/161 (13%)
Query: 15 QRSGA---GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAK 71
Q SG G+I R+ +ENF+ + ++ G +N I G NG+GKS+I+ A+C+ +
Sbjct: 43 QSSGPFVEGSIVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPA 102
Query: 72 GTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTT---VL 128
RA + F+K GCS MVE+EL F+ +++I R I + + + +
Sbjct: 103 FMGRADKVGFFVKRGCSRGMVEIEL-------FRA---SGNLVITREIDVAKNQSFWFIN 152
Query: 129 KDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169
K +++ K + NI V N C + QDK EF
Sbjct: 153 KKSTTQKIVEEK------VAALNIQVGNLCQFLPQDKVGEF 187
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 971 SGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQG-SQWIF 1029
SGGERS ST+ + +AL E+ PFR +DE + MD I+ + + +V+ A + SQ+ F
Sbjct: 992 SGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPINERRVFEMVVNTACKENTSQYFF 1051
Query: 1030 ITP 1032
ITP
Sbjct: 1052 ITP 1054
>sp|Q8CG46|SMC5_MOUSE Structural maintenance of chromosomes protein 5 OS=Mus musculus
GN=Smc5 PE=2 SV=1
Length = 1101
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 24/163 (14%)
Query: 14 PQRSGA---GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70
P+ SG G+I R+ +ENF+ + ++ G +N I G NG+GKS+I+ A+C+ +
Sbjct: 42 PRPSGTFVEGSIVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKP 101
Query: 71 KGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKD 130
RA + F+K GCS +VE+EL F+ ++II R I V+K+
Sbjct: 102 AFMGRADKVGFFVKRGCSKGLVEIEL-------FRT---SGNLIITREI------DVIKN 145
Query: 131 HQ----GKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169
K+ ++K + E + NI V N C + QDK EF
Sbjct: 146 QSFWFINKKPVTQKI-VEEQVAALNIQVGNLCQFLPQDKVGEF 187
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 971 SGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQG-SQWIF 1029
SGGERS ST+ + +AL E+ PFR +DE + MD I+ + + +V+ A + SQ+ F
Sbjct: 992 SGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPINERRVFEMVVNTACKENTSQYFF 1051
Query: 1030 ITP 1032
ITP
Sbjct: 1052 ITP 1054
>sp|Q08204|SMC5_YEAST Structural maintenance of chromosomes protein 5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC5 PE=1
SV=1
Length = 1093
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 9/154 (5%)
Query: 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
G+I ++RL++F+ ++ + L +N I G NGSGKS + A+C+ + + R+ +
Sbjct: 40 GSIIKIRLQDFVTYTLTEFNLSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEYIGRSKKV 99
Query: 80 KDFIKTGCSYAMVEVELKNRGE--DAFKPEIFGDSIIIERRITEST--STTVLKDHQGKR 135
+DFIK G + +E+ LKN D + ++I I R IT S S ++ D+Q
Sbjct: 100 EDFIKNGQDVSKIEITLKNSPNVTDIEYIDARDETIKITRIITRSKRRSDYLINDYQVSE 159
Query: 136 VASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169
+ L+ NI ++N C +SQ++ EF
Sbjct: 160 SVVKT-----LVAQLNIQLDNLCQFLSQERVEEF 188
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 155/339 (45%), Gaps = 48/339 (14%)
Query: 714 EISQEISNIQEEIQEKEI----ILEKLQFSMNEAE------AKVEDLKLSFQSLCESAKE 763
++SQ+I +I ++IQ+ + +L K+ SM + + L+ Q++ S +
Sbjct: 739 DVSQKIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMND 798
Query: 764 EVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIK---EAESQYRELELLRQD 820
+ F E +L K+ YED + + V ++ E +S RE+ QD
Sbjct: 799 VIGFFNEREADL-------------KSQYED--KKKFVKEMRDTPEFQSWMREIRSYDQD 843
Query: 821 SCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSES--IEDLRMLYE 878
+ K + + + E E G ++ S + + +++L + +H S ++ +
Sbjct: 844 TKEKLNKVAEKYEEE--GNFNLSFVQDV---LDKLESEIAMVNHDESAVTILDQVTAELR 898
Query: 879 EKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISG 938
E EH + ++ + + + K++ L+ + + +++ +F G +G
Sbjct: 899 ELEHTVPQQSKDLETIKAKLKEDHAVLEPKLDD-------IVSKISARFARLFNNVGSAG 951
Query: 939 KINI----NYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPF 994
+ + +Y E + I VK +A + D+ SGGER+ ST+ + +AL E T APF
Sbjct: 952 AVRLEKPKDYAEWKIEIMVKFRDNAPLKKL-DSHTQSGGERAVSTVLYMIALQEFTSAPF 1010
Query: 995 RAMDEFDVFMDAISRKISLDTLVDFALAQG-SQWIFITP 1032
R +DE + MD+ + +I +V+ A A+ SQ+ ITP
Sbjct: 1011 RVVDEINQGMDSRNERIVHKAMVENACAENTSQYFLITP 1049
>sp|Q9HK21|SMC_THEAC Chromosome partition protein Smc OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=smc PE=3 SV=1
Length = 1140
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 247/1150 (21%), Positives = 452/1150 (39%), Gaps = 239/1150 (20%)
Query: 22 ITRVRLENFMCHSSLQ-IELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLK 80
I R+ NF + I + +N I+G NGSGKS I L G ++ RA L
Sbjct: 5 IERIEAHNFKSFRRKKVINFTKGLNVISGPNGSGKSNIGDMLLFVLGTKSIHAVRADRLS 64
Query: 81 DFIKTG----CSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRV 136
D + G CS V + R +D G S++IERR+ G V
Sbjct: 65 DLVSKGSGNECS-----VSVTFRSDD-------GRSLVIERRLVIEDEPKSYYYVNG--V 110
Query: 137 ASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDK----------DKFKATLLQQ 186
SR E+ E + I+ ++ D + +SG ++ D+F + +++
Sbjct: 111 RSRLSEIDETLASMGINFGTYSFVLQGDINDFISYSGQERRKLIERISGVDQFDSE-IER 169
Query: 187 VNDLLQSIYNHLNKGDALVLELEATIK--PTEKELSE-----LQRKIRNMEHVEEIT-QD 238
V ++++ ++ ++ E ++ TEKE E L+RK R++E+ E + ++
Sbjct: 170 VKADIEAVSRNMEINQTIIDEKRQNLERLRTEKEKKERYDALLKRK-RDVEYTEILNRKN 228
Query: 239 LQRLKKKLAWSWVYDVDR---QLKEQTLKIEKLKD--RIPR--CQAKIDSRHSI-LESLR 290
+K+ + D+ + QL+E+ +EK + RI R +ID S + ++
Sbjct: 229 AMERQKRTIEGQISDLTKEIAQLEERRSDLEKRSEAIRIRREDVAKRIDDLTSGEMNRVK 288
Query: 291 DCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVK 350
+ +IA + E R ++L+++I+ E+ + E+ +++ R +
Sbjct: 289 TDLHSVEVDIAKIRGIIDEKNRNMEKLEETIAKYESERDSTDREIEDLDRQIEEKAKRKR 348
Query: 351 GLEQQVHDIQEQH---VRNTQAE---ESEIEAKLKELQCEIDA--------------ANI 390
LE + D+++++ QAE +E K KE Q +ID N
Sbjct: 349 ALEDRYADLKKRYDDLFSRAQAEAVDAAETRRKSKEYQEKIDGLGREIEELKAAGSQMNA 408
Query: 391 TLSRMKEEDSALSEK-------------LSKEKNE-IRRISDEIEDYDKKCREIRSEIRE 436
L+ + ++ +AL E+ +KE +E + + S + D K +I I +
Sbjct: 409 DLAVLLQKKAALEERKEDLDLKIRTSEWKAKETSEDMGKYSRKYYDLKAKYDQINDRISD 468
Query: 437 LQQHQTNKVTA--FGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVN-GDTWAPAVEQ 493
L+ + K + RV +R ++ + G IG L++ G+ + AVE
Sbjct: 469 LKSEISEKEASAKIASSRVPEYVRNVKMLEESVE----GVIGLVRDLISYGEKYVKAVES 524
Query: 494 AIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKH---P 550
A G LNA +V KD + + C +QI+ + R P LP K P
Sbjct: 525 AGGGRLNAVVV---KDDAVAKEC--------IQIL-----KDRKISPMTFLPLNKMRDPP 568
Query: 551 TTLSVLQ-SDNPTVINVLVDMGSAERQ------------VLVRDYDVGKAVAFEQRISNL 597
V + S +P + +L+D E Q +LV+D D G+ R+ +
Sbjct: 569 AQRDVGKISKDPGYLGILMDFVDFEDQYRSAVYYAIRDTILVQDIDAGR------RLMGI 622
Query: 598 KEVYTLDGHKMFSRGS--------------------------VQTILPLNRRLRTGRLCG 631
+ TLDG GS +Q ++ R R R
Sbjct: 623 FRLVTLDGDIFDPGGSITGGYRNYASDYASALRMQHDLEGMKIQLSSLMDDRSRIKREMD 682
Query: 632 SYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKE- 690
++ + R + +E + +K S E L+ + + R A++ RM E
Sbjct: 683 QAFSEMSEASRRTGEIMKEQEMLKKEAERSREELKQVMDDISSTDRAI--ADKKRMIDEN 740
Query: 691 -----------LAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQ------------ 727
+Q+ N P + ++S EI+ ++ EI
Sbjct: 741 EKVIEQKTLDLHKYQEALNDLYDRIDPEFFKNIGDLSNEINEVRSEIDAVASELNQITSR 800
Query: 728 -----------EKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKE---EVDTFEA--- 770
E ++I KLQ N A+++DL + L E AK+ ++ E
Sbjct: 801 RDILSSERKHLEDQMIDTKLQ--ENSIAAEIDDLNGKKRELEEKAKKYQYALNDLEGRYG 858
Query: 771 --------AEKELMEIEKNLQTSESEKAHYEDVMRT-RVVGAIKEAESQYRELELLRQDS 821
A+K++ E+E + +++ D+M +V I E E EL
Sbjct: 859 NLSAQVREADKQIREMENGINDAKASIDLKNDLMNDLKVKAGILEGNLSSIERELSSYSG 918
Query: 822 CRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKE 881
C EA+ G + +++ + L + QY ++++DL YE+K
Sbjct: 919 C------------EAVIGDLQAMRQEIERAIMDLGEINNAAPQQYEDALKDLDD-YEKKH 965
Query: 882 HKILRK----QQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGIS 937
K++ + ++T EK R F + T + ++ + + G G +
Sbjct: 966 EKLMEEKKALEETTAMLNEKKREV----------FVKTFTDISEKMNYVYGIING--GTA 1013
Query: 938 GKININYEEKTLSIEVKM-PQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRA 996
I I + T S+EV + P+D ++ + + LSGGE+S + L F A+ + +
Sbjct: 1014 KLIMIGSDPLTSSVEVSVTPKDKATVKI---QALSGGEKSVAALSFITAVQILMPSSIYF 1070
Query: 997 MDEFDVFMDA 1006
+DE D+++DA
Sbjct: 1071 LDEVDMYLDA 1080
>sp|Q805A1|SMC5_XENLA Structural maintenance of chromosomes protein 5 OS=Xenopus laevis
GN=smc5 PE=2 SV=1
Length = 1065
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 17/143 (11%)
Query: 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
G+I R+++ENF+ + ++ G ++N I G NG+GKS+I+ A+C+ + RA +
Sbjct: 29 GSIVRIKMENFLTYDQCEVFPGPYLNMIVGANGTGKSSIVCAICLGLAGKTAFIGRADKV 88
Query: 80 KDFIKTGCSYAMVEVEL-KNRGEDAFKPEIFGDSIIIERRITESTSTTVLK-DHQGKRVA 137
++K GC VE+EL K G ++II+R I + + +V +H+ +
Sbjct: 89 GFYVKRGCQKGFVELELYKTSG-----------NVIIKREIQVANNQSVWYINHKSATLK 137
Query: 138 SRKQELLELIDHFNIDVENPCVI 160
+ + E + NI V N C I
Sbjct: 138 T----VEEQVPALNIQVGNLCPI 156
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 971 SGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQG-SQWIF 1029
SGGERS ST+ + +AL E+ PFR +DE + MD ++ + + +V A + SQ+ F
Sbjct: 957 SGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPVNERRVFEMVVKTACKENTSQYFF 1016
Query: 1030 ITP 1032
ITP
Sbjct: 1017 ITP 1019
>sp|O58687|RAD50_PYRHO DNA double-strand break repair Rad50 ATPase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=rad50 PE=3 SV=1
Length = 879
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/379 (22%), Positives = 172/379 (45%), Gaps = 63/379 (16%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I RV ++NF H + +IE +N I GQNG+GKS++L A+ + + R +
Sbjct: 3 IERVIVQNFRSHKNSEIEFKPGINLIIGQNGAGKSSLLDAILVGLYWSKRMRLRGLKKDE 62
Query: 82 FIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQ 141
F +TG A++E+ + ED K ++ D + + + LK G+ +
Sbjct: 63 FTRTGTRGAIIEITFE---EDGTKYKVLRDF---------ARNVSYLKRLDGREWRHVTE 110
Query: 142 ELLELIDHFNIDVENP------CVIMSQDKSREFLHSGNDKDKFKATLLQQVNDLLQSIY 195
+E + F ID P + + Q + L S +DK +L D L+ Y
Sbjct: 111 TSMESVSSF-IDRIIPYNVFLNAIYVRQGQIDAILESDETRDKIVKEILNL--DKLEKAY 167
Query: 196 NHLNK-----------GDALVLE---LEATIKPTEKELSELQRKIRNMEHVEEITQDLQR 241
++L K + +++ +E I+ EK +E+ +IRN I+ +L R
Sbjct: 168 DNLGKIRKYIKYSIEEKEKFIMKTENIEDLIRTQEKSFTEVLNEIRN------ISSNLPR 221
Query: 242 LKKKL------------AWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESL 289
L+++L ++ + ++ +L E K +L++RI + ++ I+ + + L
Sbjct: 222 LRRELEGIKEEVKTLEATFNSITELKLRLGELNGKKGRLEERIRQLESGIEEKRKKSKEL 281
Query: 290 RDC------FMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQ 343
+ KK+ E ++E E +K+EL++ + + + +L+ E+ R +
Sbjct: 282 EEVVKELPELEKKETEYRRLIEFKDEYLVKKNELEKRLGILSN-RLQ---EVKRKIKDAE 337
Query: 344 KMVNRVKGLEQQVHDIQEQ 362
V R++ +E+++ +IQE+
Sbjct: 338 SKVARIRWIEERLKEIQEK 356
>sp|Q802R9|SMC5_TAKRU Structural maintenance of chromosomes protein 5 OS=Takifugu
rubripes GN=smc5 PE=2 SV=1
Length = 1092
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 10 SGYGPQRSGA-------GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTAL 62
SG+ P GA G+I R+ + NF+ + ++ G +N I G NG+GKS+I+ A+
Sbjct: 27 SGHRP--CGAEVEGRMDGSILRITMRNFLTYDYTEVYPGPNLNMIVGANGTGKSSIVCAI 84
Query: 63 CIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITES 122
C+ + R + ++K GC +E+EL G G+ +I E+
Sbjct: 85 CLGLAGKTAVLGRGDKVGLYVKRGCQKGSIEIELYKHG---------GNLVITREIHVEN 135
Query: 123 TSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169
+ + + GK+ + E E + + I V N C + Q+K EF
Sbjct: 136 NQSHWMIN--GKQRNQKAVE--EEVKNLCIQVSNLCQFLPQEKVGEF 178
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 919 LKRQLTWQFNGHLGKKGISGKINI------NYEEKTLSIEVKMPQDASSSNVRDTRGL-- 970
L Q+ +F +G++++ +Y++ + I VK S++ + +
Sbjct: 928 LVEQINEKFTAFFRSMNCAGEVDLHSEKEEDYDKYGIRIRVKF---HSNTQLHELTPFHQ 984
Query: 971 SGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQ-GSQWIF 1029
SGGERS ST+ + ++L E+ PFR +DE + MD I+ + D +V A + SQ+ F
Sbjct: 985 SGGERSVSTMLYLMSLQELNRCPFRVVDEINQGMDPINERRVFDIVVGTACKERTSQYFF 1044
Query: 1030 ITPHDVGLVKQGERI 1044
ITP + +K E +
Sbjct: 1045 ITPKLLQNLKYAEEM 1059
>sp|Q96YR5|RAD50_SULTO DNA double-strand break repair Rad50 ATPase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rad50 PE=3 SV=2
Length = 879
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I R+ +ENF+ H IE VN I G NG+GKS+I+ A I+F K + A +D
Sbjct: 3 IRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDA--ISFSLFRKSLRDAKKQED 60
Query: 82 FIKTGCSYAMVEVELKNRG 100
IK G A V + L+N+G
Sbjct: 61 LIKRGAGRATVTLYLENKG 79
>sp|O33600|RAD50_SULAC DNA double-strand break repair Rad50 ATPase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=rad50 PE=3 SV=1
Length = 886
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I +RL+NF+ H ++ +N I G NG+GKS+I+ I FG + + ++
Sbjct: 3 IREIRLQNFLSHEDTTVKFEGSINVIIGNNGAGKSSIIDG--ILFGLFKRTNRDIGKNEE 60
Query: 82 FIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQ 141
IK G K G+ + K EI GD+ +I+R + E++ T+ +GK + +Q
Sbjct: 61 LIKKG----------KKSGQVSIKFEINGDTYLIDRNVGETSRDTISLLKEGKIITLARQ 110
>sp|P38989|SMC2_YEAST Structural maintenance of chromosomes protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC2 PE=1
SV=1
Length = 1170
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 27 LENFMCHSSLQIELGEW---VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFI 83
++ F +++ + + +W N ITG NGSGKS IL A+C G + T RA++L+D I
Sbjct: 8 IDGFKSYATRTV-ITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRASSLQDLI 66
Query: 84 ----KTGCSYAMVEVELKNRGEDAFKPEIFGDS--IIIERRIT-ESTSTTVLKDHQGKRV 136
+ G + A V + N + + P F +S I + R++ TS ++ H+ +
Sbjct: 67 YKRGQAGVTKASVTIVFDN-TDKSNSPIGFTNSPQISVTRQVVLGGTSKYLINGHRAPQ- 124
Query: 137 ASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171
Q +L+L +++ NP ++ Q K + L+
Sbjct: 125 ----QSVLQLFQSVQLNINNPNFLIMQGKITKVLN 155
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIF 1029
LSGG+RS L +AL + AP +DE D +D +S ++ L+ +GSQ+I
Sbjct: 1084 LSGGQRSLIALSLIMALLQFRPAPMYILDEVDAALD-LSHTQNIGHLIKTRF-KGSQFIV 1141
Query: 1030 ITPHDVGLVKQGERI 1044
++ + G+ R+
Sbjct: 1142 VSLKE-GMFANANRV 1155
>sp|P41003|SMC2_SCHPO Structural maintenance of chromosomes protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut14 PE=1 SV=2
Length = 1172
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 198/442 (44%), Gaps = 63/442 (14%)
Query: 45 NFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFI----KTGCSYAMVEVELKNRG 100
N ITG NGSGKS IL A+C G T RA L+D I + G + A V + NR
Sbjct: 28 NAITGLNGSGKSNILDAICFVLGITNMSTVRAQNLQDLIYKRGQAGITRASVTIVFNNR- 86
Query: 101 EDAFKPEIFGD--SIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENP 157
+ A P F + + + R+I TS ++ H+ + +Q + L +++ NP
Sbjct: 87 DPASSPIGFENHPQVSVTRQIIMGGTSKYLINGHR-----ALQQNVQNLFQSVQLNINNP 141
Query: 158 CVIMSQDKSREFLHSGNDKDKFKAT-LLQQVNDLL---------QSIYNHLNKGDALVLE 207
++ Q + + L+ KAT +L + + + + + + +A V E
Sbjct: 142 NFLIMQGRITKVLN-------MKATEILSMIEEASGTRMFEERKEKAFRTMQRKEAKVEE 194
Query: 208 LEATIK-PTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIE 266
+ ++ E L++L+ + + + I DL+RL L ++ Y + +LK+E
Sbjct: 195 INTLLREEIEPRLTKLRTEKKTFLEYQHIYNDLERL-SHLCTAYDY------YKLSLKVE 247
Query: 267 KLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATK 326
+L QA +HS + + K E+ ++ EK +++ +DE + +S+++
Sbjct: 248 ELT-----VQA--SQKHSHIAEMESSLQTSKQEVLILKEK---IKKIEDERMRQMSVSSD 297
Query: 327 EKLELEGELVR-NTSYMQKMVN-RVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCE 384
L+ + + V N + + + + LE++ D+Q+ + + E+E L+ +
Sbjct: 298 RTLDSQLQTVNENITRISTSIELKNTALEEEHGDLQQ-----IRGKAKELETLLRGKRKR 352
Query: 385 IDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIE-------DYDKKCREIRSEIREL 437
+D + K+E ++S+ ++ I ++ + Y +K E R + +
Sbjct: 353 LDEVLSVYEKRKDEHQSISKDFKSQEELISSLTTGLSTTEGHETGYSRKLHEARDTLNDF 412
Query: 438 Q-QHQTNKVTAFGGDRVISLLR 458
+ + +TN++ G ++ ISL +
Sbjct: 413 KAEKETNRLKLEGLNKQISLTK 434
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIF 1029
LSGG+RS L ++L + AP +DE D +D +S ++ L+ +GSQ+I
Sbjct: 1086 LSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALD-LSHTQNIGRLIKTKF-KGSQFII 1143
Query: 1030 ITPHDVGLVKQGERI 1044
++ + G+ R+
Sbjct: 1144 VSLKE-GMFTNANRL 1157
>sp|P58302|RAD50_THEVO DNA double-strand break repair Rad50 ATPase OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=rad50 PE=3 SV=1
Length = 895
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I R+RL NF+ HS I +N I GQNG+GKS+I+ A+ A +R +D
Sbjct: 3 IERIRLRNFLSHSDSDIYFDTGINMIIGQNGAGKSSIVDAIRFALFS----DKRTRRTED 58
Query: 82 FIKTGCSYAMVEVELKNRG 100
IK G Y VE+ ++ G
Sbjct: 59 MIKKGERYMEVELYFRSEG 77
>sp|Q9HLR8|RAD50_THEAC DNA double-strand break repair Rad50 ATPase OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=rad50 PE=3 SV=1
Length = 896
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I R+RL NF+ H +I VN I G NG+GKS+I+ A+ A G +R ++D
Sbjct: 3 IDRIRLINFLSHEDSEIFFDTGVNIIVGHNGAGKSSIIDAIRFALF----GDKRTKKIED 58
Query: 82 FIKTGCSYAMVEVELKNRG 100
I+ G VE+E ++ G
Sbjct: 59 MIRKGAKSLEVEMEFRHGG 77
>sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1 OS=Arabidopsis
thaliana GN=SMC1 PE=2 SV=2
Length = 1218
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 16 RSGAGTITRVRLENFMCHSSLQIELGEWVNF--ITGQNGSGKSAILTALCIAFGCRAKGT 73
+S +G I ++ +ENF + Q+ +G + +F I G NGSGKS ++ A+ G R G
Sbjct: 5 QSPSGKILQLEMENFKSYKGHQL-VGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRT-GQ 62
Query: 74 QRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQG 133
R + LKD I YA + + + RG AF ++ +E R T S ++ ++
Sbjct: 63 LRGSQLKDLI-----YAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEY-- 115
Query: 134 KRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKATLLQQVNDLLQS 193
R+ +R L D +N + + +++ K+R FL D + + +++ LL+
Sbjct: 116 -RIDNRVVNL----DEYNGKLRSLGILV---KARNFLVFQGDVESIASKNPKELTGLLEE 167
Query: 194 I 194
I
Sbjct: 168 I 168
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 855 LNQRLKHESHQYSESIEDLRML--YEEKEHKILRKQQTYQAFREKVRACREALDS----R 908
Q+++ ++ + + +LR L YE + K + Q ++A R++ + +A ++ R
Sbjct: 984 FRQKIESKTSEIERTAPNLRALDQYEAIQEKEKQVSQEFEAARKEEKQVADAFNTVKQKR 1043
Query: 909 WGKFQR-------NATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASS 961
+ F N + +QLT LG + +N+ E+ +K +
Sbjct: 1044 YELFMEAFNHIASNIDKIYKQLTKSNTHPLGG---TAYLNLENEDDPFLHGIKYTTMPPT 1100
Query: 962 SNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAIS 1008
RD LSGGE++ + L ++H +PF +DE D +D ++
Sbjct: 1101 KRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLN 1147
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 96/420 (22%), Positives = 188/420 (44%), Gaps = 56/420 (13%)
Query: 36 LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAM 91
+ ++ + V + G NGSGKS I A+ G ++ + R ++D I G +
Sbjct: 18 ISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGKMEDIIFAGSDSRKRLNL 77
Query: 92 VEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFN 151
EV L +D F P F + + + RR+ S + L ++Q R L ++ID F
Sbjct: 78 AEVTLTLDNDDHFLPIDFHE-VSVTRRVYRSGESEFLINNQPCR-------LKDIIDLF- 128
Query: 152 IDV---ENPCVIMSQDKSREFLHS-GNDKD----------KFKATLLQQVNDLLQSIYNH 197
+D + I+SQ K E L S D+ K+K + N L ++ ++
Sbjct: 129 MDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFEEAAGVLKYKTRKKKAENKLFET-QDN 187
Query: 198 LNKGDALVLELEATIKPTEKELS---ELQRKIRNMEHVE--EITQDLQRLKKKLAWSWVY 252
LN+ + ++ ELE ++P + + S + K + +EHVE D++ L K WS +
Sbjct: 188 LNRVEDILHELEGQVEPLKIQASIAKDYLEKKKELEHVEIALTAYDIEELHGK--WSTLK 245
Query: 253 DVDRQLKEQTL-----------KIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIA 301
+ + KE+ L KIE +D+I +D +L + K +
Sbjct: 246 EKVQMAKEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKE 305
Query: 302 VMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQE 361
V+ E+ + +++L+++I +++ L+ EL + + + + VK L QV + Q+
Sbjct: 306 VLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQ 365
Query: 362 Q---HVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISD 418
H N +E K+++L+ + + + ++ E L +++S+ ++R++D
Sbjct: 366 ALSLHNEN-------VEEKIEQLKSDYFELLNSQASIRNELQLLDDQMSQSAVTLQRLAD 418
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair Rad50 ATPase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=rad50 PE=3 SV=1
Length = 876
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I RV++EN HSS +IE E +N + G NG+GK+ +L A+ +A R +
Sbjct: 2 IERVKIENLRSHSSTEIEFREGINVLVGPNGAGKTTVLEAITLALFPRT-----FRSYDH 56
Query: 82 FIKTGCSYAMVEV 94
I+ G A+VEV
Sbjct: 57 MIREGERRAVVEV 69
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 970 LSGGERSFSTLCFALALHEMTE--APFRAMDEFDVFMDAISRKISLDTLVDFALAQG--S 1025
+SGGE+ L LAL + APF +DE V +DA R+ L + L +G
Sbjct: 782 MSGGEKIIIGLALRLALAMVGSSFAPFIMLDEPTVHLDAEHRERLAQALRELDLGKGRVR 841
Query: 1026 QWIFITPHD 1034
Q I +T HD
Sbjct: 842 QAIVVT-HD 849
>sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of chromosomes protein 4 OS=Homo sapiens
GN=SMC4 PE=1 SV=2
Length = 1288
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 152/364 (41%), Gaps = 70/364 (19%)
Query: 712 VDEISQEISNIQEEIQEKEIILEKLQFS-------MNEAEAKVEDLKLSFQSLCESAKEE 764
+DE + I+ Q I+ + L+K Q S + + E +V+DL +SL + A E
Sbjct: 913 LDECASAITKAQVAIKTADRNLQKAQDSVLRTEKEIKDTEKEVDDLTAELKSLEDKAAEV 972
Query: 765 VDTFEAAEKELMEIEKN----LQ----TSESEKAHYEDVMRTR-----VVGAIKEAESQY 811
V AAE+ L EI+K LQ E+E A +D + + + G I E S+
Sbjct: 973 VKNTNAAEESLPEIQKEHRNLLQELKVIQENEHALQKDALSIKLKLEQIDGHIAEHNSKI 1032
Query: 812 R---------ELELLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHE 862
+ L + + + SV+ PE ++EA+ P+ ++ Q+ L R HE
Sbjct: 1033 KYWHKEISKISLHPIEDNPIEEISVLSPE-DLEAI-----KNPDSITNQIALLEARC-HE 1085
Query: 863 SHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQ 922
+I + Y++KE L++ + + R+A + L++Q
Sbjct: 1086 MKPNLGAIAE----YKKKEELYLQRVAELDKITYERDSFRQAYED-----------LRKQ 1130
Query: 923 LTWQFNGHLGKKGISGKININYEEKTLS----IEVKMPQDASSSNV-----------RDT 967
+F G I+ K+ NY+ TL +E+ D S + +
Sbjct: 1131 RLNEFMA--GFYIITNKLKENYQMLTLGGDAELELVDSLDPFSEGIMFSVRPPKKSWKKI 1188
Query: 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQW 1027
LSGGE++ S+L ALH P MDE D +D + +S+ + + +Q+
Sbjct: 1189 FNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF--KNVSIVAFYIYEQTKNAQF 1246
Query: 1028 IFIT 1031
I I+
Sbjct: 1247 IIIS 1250
>sp|O29230|RAD50_ARCFU DNA double-strand break repair Rad50 ATPase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rad50 PE=3 SV=1
Length = 886
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 25 VRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK 84
++++NF HS +IE +N I G+NG+GKS+IL A+ +AF T R D ++
Sbjct: 7 LQIKNFRSHSDSKIEFDTGINLIAGRNGAGKSSILEAILVAFYGLKPATLRK---NDLVR 63
Query: 85 TGCSYAMVEVELKNRGED-AFKPEIFGDSIIIERRITESTST 125
S + + G+D + G+SI+ + I E S
Sbjct: 64 VNSSGYSLSLTFSLNGDDYTISRKSNGESILTGKEIVEGDSN 105
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 207 ELEATIKPTEKELSELQRKIR--NMEHVEEITQDLQRLKKKL-AWSWVYDVDRQLKEQTL 263
E+E +K E E EL RKIR E +EE+ +++Q L+ W + D + +L+ +
Sbjct: 559 EIEEALKNVESERGELHRKIREEGFESLEELEREVQSLRPFYNKWLELKDAESRLESELK 618
Query: 264 KIEKLKDRIPRCQAKIDSRHSILESLR 290
+ EKL+D I AK++ + E +R
Sbjct: 619 RREKLEDEISEAIAKLEEANGKAEEIR 645
>sp|Q09591|MIX1_CAEEL Mitotic chromosome and X-chromosome-associated protein mix-1
OS=Caenorhabditis elegans GN=mix-1 PE=1 SV=2
Length = 1244
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 22 ITRVRLENFMC---HSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
I + L+ F H+ + ++ N ITG NGSGKS IL ++C G RA +
Sbjct: 3 IKSIHLDGFKSYQKHTDI-LDFSPTFNAITGYNGSGKSNILDSICFIMGINKLDNIRAKS 61
Query: 79 LKDFIKTGCSYAMVEVELKNRGEDAFKPEIFG----DSIIIERRIT-ESTSTTVLKDHQG 133
+ + I G + A+V+V N + + FG D I+++R IT ++T +
Sbjct: 62 MHELISHGGTKAIVQVRFDNTDK---RCSPFGMEHLDEIVVQRIITAQATGKGCATSYTL 118
Query: 134 KRVASRKQELLELIDHFNIDVENPCVIMSQ 163
A+ ++ + ++V NP ++ Q
Sbjct: 119 NGHAATNGKMQDFFRGVGLNVNNPHFLIMQ 148
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMD 1005
LSGG+RS L LA+ + AP +DE D +D
Sbjct: 1100 LSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALD 1135
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair Rad50 ATPase OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=rad50 PE=3 SV=1
Length = 864
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 181/433 (41%), Gaps = 99/433 (22%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA-FGCRAKGTQRAATLK 80
I ++ L NF+ H +I+ +N I GQNG+GKS+I+ + + F ++G
Sbjct: 3 IDKITLTNFLSHEHSEIQFMGEINVIVGQNGAGKSSIIDGIVFSLFRTHSRGNN-----D 57
Query: 81 DFIKTGCSYAMVEVELKNRGEDAFKPEIFGD-------------------SIIIERRITE 121
+ I+ G + V + L N + K EI D + ++ I +
Sbjct: 58 NLIRKGSNRGSVTLYLSNEKD---KIEIIRDIRSTTEDRLIRNQFPIARSATVVSNEIEK 114
Query: 122 --------STSTTVLKDHQGKRVASRKQEL------LELIDHFNIDVENPCVIMS---QD 164
+ ST +++ + ++ QE+ LELI+ ID P V ++
Sbjct: 115 ILGIDKDIALSTIIVRQGELDKILENFQEIMGKILKLELIEKL-IDSRGPIVEFRKNLEN 173
Query: 165 KSREFLHSGNDKDKFKAT-----------------LLQQVNDLLQSI------YNHLNKG 201
K RE D + FK T L ++ +L + I ++ K
Sbjct: 174 KLRELDRIEQDYNNFKKTVEEKRARVLELKKDKEKLEDEIKNLEKRIKDIKDQFDEYEKK 233
Query: 202 DALVLELEATIKPTEKELSELQRKI-------RNMEHVEEITQDLQRLKK-KLAWSWVYD 253
L+L T+K E EL+EL R I NM+ +E+ +L+ L+ KL +
Sbjct: 234 RNQYLKLTTTLKIKEGELNELNRSIEELRKQTENMDQLEKEINELENLRNIKLKFEKYEV 293
Query: 254 VDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRR 313
+ + E + + L+ I + I ++K E+ K E+ R+
Sbjct: 294 LAKSHTEMSANVINLEKEIEEYEKAI---------------RRKEELEPKYLKYKELERK 338
Query: 314 KDEL----QQSISLAT--KEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNT 367
+EL QQ + L + KL L+ L ++ S + +++V LEQ+V + +++ + N
Sbjct: 339 LEELQPKYQQYLKLKSDLDSKLNLKERLEKDASELSNDIDKVNSLEQKVEETRKKQL-NL 397
Query: 368 QAEESEIEAKLKE 380
+A+ +++E+ + E
Sbjct: 398 RAQLAKVESLISE 410
>sp|D4GUK1|RAD50_HALVD DNA double-strand break repair Rad50 ATPase OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=rad50 PE=1 SV=1
Length = 893
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA-FGCRAKGTQRAATLK 80
TR+ + NF + +++L + V I G NGSGKS++L A A +G +A A TL+
Sbjct: 3 FTRIAIRNFKPYEDAELDLRDGVTVIHGVNGSGKSSLLEACFFALYGSKAL----AGTLE 58
Query: 81 DFIKTGCSYAMVEVELKNRG 100
D + TG A + +E + G
Sbjct: 59 DVVTTGADDAEITLEFVHDG 78
>sp|P58301|RAD50_PYRFU DNA double-strand break repair Rad50 ATPase OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /
Vc1) GN=rad50 PE=1 SV=1
Length = 882
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA--FGCRAKGTQRAATL 79
+ RV ++NF HS +E E +N I GQNGSGKS++L A+ + + R K ++
Sbjct: 3 LERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKD--- 59
Query: 80 KDFIKTGC 87
+F K G
Sbjct: 60 -EFTKVGA 66
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 935 GISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPF 994
G S ++ + E S +++ + +V+ +SGGE++ + L F A+ + APF
Sbjct: 1034 GGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPF 1093
Query: 995 RAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035
DE D +D + K D + + ++ SQ+I IT DV
Sbjct: 1094 YLFDEIDAHLDDANVKRVADLIKES--SKESQFIVITLRDV 1132
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 22 ITRVRLENFMCHSS--LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
I ++ L+ F + + + I + I G NGSGKS I A+ G + RA+ +
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63
Query: 80 KDFIKTG------CSYAMVEVELKNRGEDAFKPEIFGDSIIIERRI 119
D I G YA V + N ED P I D ++I RR+
Sbjct: 64 SDLIFAGSKNEPPAKYAEVAIYFNN--EDRGFP-IDEDEVVIRRRV 106
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 137/310 (44%), Gaps = 69/310 (22%)
Query: 217 KELSELQRKI----RNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRI 272
K++ E+ KI RN+E +E +D QR +LA + +L++ +IEK K I
Sbjct: 298 KKIGEVTSKIELTKRNIEVAKEELEDAQR---RLAKT-----KEELRKVLSEIEKSKGAI 349
Query: 273 PRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEV-------RRRKDELQQSISLAT 325
R + + D+ L + KK+ E V+V K E+ R D + + + T
Sbjct: 350 TRWKKRRDA-------LINEIKKKEEERNVLVVKLGEIDKTFGAAREEFDSVVKELEETT 402
Query: 326 KEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQ------HVRNTQAEESEIEAKLK 379
++ E+EG + R +K+ +R+ L ++ I+E+ V + +AE SEIE KL
Sbjct: 403 RKMYEIEGNIRRLQEEKEKLHSRILFLRAKLPGIKEKINEFKAVVEDKRAEISEIEGKLS 462
Query: 380 ELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKK--CREIRSEIREL 437
+Q + R+K E +++ + NE+ ++S E+E +++ E + E+R
Sbjct: 463 TIQAK---------RIKVE-----KEIEAKSNELEKVSKELESSERELIAAEAQREVRGN 508
Query: 438 QQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGR 497
+ + K + GG I + + V + +A A+E A+G
Sbjct: 509 RAAEELKRSGIGG---------------------IYGTLAELIKVKDEAYALAIEVALGN 547
Query: 498 LLNAFIVTDH 507
+ +V D
Sbjct: 548 RADNVVVEDE 557
>sp|Q5N0D2|SMC_SYNP6 Chromosome partition protein Smc OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=smc PE=3 SV=2
Length = 1195
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 938 GKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAM 997
G + ++ E S + + VR +SGGE+S + L F AL +PF A+
Sbjct: 1073 GSLQLDNPEDPFSSGLNLIAHPKGKPVRRLASMSGGEKSLTALSFIFALQRYRPSPFYAL 1132
Query: 998 DEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043
DE D F+D + + V AQ +Q+I ++ H +++ ER
Sbjct: 1133 DEVDSFLDGAN--VERLARVIRQQAQAAQFIVVS-HRRPMIEAAER 1175
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 27 LENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTG 86
++F +SL + L E+ +TG NGSGKS IL AL A G + RA L D + +
Sbjct: 12 FKSFGGTTSLPL-LPEF-TVVTGPNGSGKSNILDALLFALGLSSSKGMRADRLPDLVNS- 68
Query: 87 CSYA 90
+YA
Sbjct: 69 -TYA 71
>sp|P62134|RAD50_METMP DNA double-strand break repair Rad50 ATPase OS=Methanococcus
maripaludis (strain S2 / LL) GN=rad50 PE=3 SV=1
Length = 993
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA-FGCRAKGTQRAATLK 80
I +++ENF H + I + + I GQNGSGKS+I A+ A F R + ++
Sbjct: 3 IKNIKMENFRSHRNTSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFR----IE 58
Query: 81 DFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERR 118
+ ++ G + VE+E E+ G++ +++R+
Sbjct: 59 NLMQQGAASFSVELEF----------EMMGNTYLVKRK 86
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 22 ITRVRLENFMCHSSL--QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
I ++ +E F + + +I LGE + G NG+GKS I A+ A G + RA L
Sbjct: 7 IEKIVVEGFKSYGTKRKEIPLGEGFIAVVGPNGAGKSNIGDAISFALGLSSAKALRAKNL 66
Query: 80 KDFI--KTG--CSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT 120
I K G +A VEV KN G AF E + ++I R+++
Sbjct: 67 SYLIFSKNGQKADHAYVEVHFKNLG--AFPVE--DEEVVISRKVS 107
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 41/209 (19%)
Query: 833 EIEALGGWDGSTPEQLSAQVNRLN------QRLKHESHQYSESIEDLRMLYEEKEHKILR 886
EI+ LG + E + ++ R N Q+LK ES ++ L EE E+K
Sbjct: 948 EIQKLGSVNFRAEEDYAEELKRFNDYKEKQQKLKEESKA-------IKKLIEETENK--- 997
Query: 887 KQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEE 946
K + EA + Q N +L KR ++ G GK ++ ++ E
Sbjct: 998 ----------KRKVFLEAFN------QINKSL-KRIFSFLSPG--GK----AQMFLDNPE 1034
Query: 947 KTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDA 1006
S V++ +V+ +SGGE++ + L AL E +PF DE D +D
Sbjct: 1035 DPFSGGVQLTVKPRGKDVQYLEAMSGGEKTLAALSLIFALQEYKPSPFYYFDEVDAHLDE 1094
Query: 1007 ISRKISLDTLVDFALAQGSQWIFITPHDV 1035
++ K + L+ ++ +Q+I +T +V
Sbjct: 1095 VNAK-KVGELIR-EKSKEAQFIVVTLREV 1121
>sp|Q9ERA5|SMC4_MICAR Structural maintenance of chromosomes protein 4 (Fragment)
OS=Microtus arvalis GN=SMC4 PE=2 SV=1
Length = 1243
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 138/329 (41%), Gaps = 63/329 (19%)
Query: 740 MNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKN----LQ----TSESEKAH 791
+ + E + DLK +++ + A+E + AAE+ L EI+K LQ E+E A
Sbjct: 903 IKDTEKETNDLKAELKAIEDKAEEVIKKTNAAEESLPEIQKEHRNLLQELKVIQENEHAL 962
Query: 792 YEDVMRTR-----VVGAIKEAESQYR---------ELELLRQDSCRKASVICPESEIEAL 837
+D + + + G I E S+ + +L + + SV+ PE ++EA+
Sbjct: 963 QKDALSIKLKLEQIDGHIAEHNSKIKYWQKEISKIKLHPIEDNPVETVSVLSPE-DLEAI 1021
Query: 838 GGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREK 897
P+ ++ Q+ L + HE +I + Y++KE L++
Sbjct: 1022 -----KNPDSITNQIAILEAQC-HEMKPNLGAIAE----YKKKEELYLQRV--------- 1062
Query: 898 VRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLS----IEV 953
A + + S F++ L++Q +F G I+ K+ NY+ TL +E+
Sbjct: 1063 --AELDKITSERDNFRQAYEDLRKQRLNEFMA--GFYIITNKLKENYQMLTLGGDAELEL 1118
Query: 954 KMPQDASSSNV-----------RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDV 1002
D S + + LSGGE++ S+L ALH P MDE D
Sbjct: 1119 VDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDA 1178
Query: 1003 FMDAISRKISLDTLVDFALAQGSQWIFIT 1031
+D + +S+ + + +Q+I I+
Sbjct: 1179 ALDF--KNVSIVAFYIYEQTKNAQFIIIS 1205
>sp|B9E1H0|SMC_CLOK1 Chromosome partition protein Smc OS=Clostridium kluyveri (strain NBRC
12016) GN=smc PE=3 SV=1
Length = 1185
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/411 (22%), Positives = 168/411 (40%), Gaps = 79/411 (19%)
Query: 645 LHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAER--NRMSKELAFQDVKNSFAA 702
L ++EE ++ R R D +E L L+ + + S+ER +R+ +E+ D+KN
Sbjct: 800 LKMEEELKEGRNRITDLKEGLTSLKVKRAQISENILSSERELSRLDQEIKSMDIKN---- 855
Query: 703 DAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAK 762
+I EEI+ E I+ K + +M E +V+DLK + L ES
Sbjct: 856 -----------------RSIVEEIKLSEKIIHKNELNMYSNEKEVKDLKQYMEKLQES-- 896
Query: 763 EEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSC 822
E + + +E+++ + S E V ++ KE +LEL + +S
Sbjct: 897 -----IEKSHVKTIELKQKINVSN------EKVDNLTLIINKKETSFHKIQLELTKLNSQ 945
Query: 823 R---------KASVICP-----ESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSE 868
+ ++ C + +IE L + S L + +++L +Y
Sbjct: 946 KDNIYSRLKEDMNITCDGDIEYDVQIENLEEYK-SKIVHLKSSISKLGVVNLGAIEEYKN 1004
Query: 869 SIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFN 928
+ + L +KE I KQ+ ++ + A E + G F+ N LK+ F
Sbjct: 1005 LQKKITFLSSQKEDLIKSKQE----LKKVIDAMTEKMK---GVFKENFVKLKKNFNDTFR 1057
Query: 929 GHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHE 988
L K G + + +E T +I++ + +++ +SGGE+ S + A+ +
Sbjct: 1058 -ELFKGGSADLVLTKGDELTGNIDITVQ--PPGKKLQNINLMSGGEKGLSAIALLFAMLK 1114
Query: 989 MTEAPFRAMDEFDVFMDAIS--------RKISLDTLVDFALAQGSQWIFIT 1031
+ PF +DE + +D + RK S DT Q+I IT
Sbjct: 1115 IKPTPFCILDEIEASLDDANVLRYAEFLRKFSRDT----------QFIVIT 1155
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc PE=3
SV=1
Length = 1199
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 932 GKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTE 991
G+ G +GK+++ EE S + + + +++ +SGGE+S + L F A+ +
Sbjct: 1073 GEIGGNGKLSLENEEDPFSGGLLIDASPMNKQLQNLDVMSGGEKSLTALAFLFAIQRLNP 1132
Query: 992 APFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFIT 1031
+PF +DE D +D + + D + + ++ SQ+I I+
Sbjct: 1133 SPFYVLDEVDAALDTKNASLIGDMISN--ASKESQFIVIS 1170
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 100/478 (20%), Positives = 213/478 (44%), Gaps = 80/478 (16%)
Query: 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLK 80
+I+ + L+NF + ++++ + I G NGSGKS + +C G + + RA
Sbjct: 3 SISEIHLKNFKSFKNTKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFN 62
Query: 81 DFIK--TG--CSYAMVEVELKNRGED----------AFKPEIFGDSII------IERRIT 120
I G YA V + N + K ++ GD+ +E++ T
Sbjct: 63 QLITYHNGKRADYAEVTLFFDNINREIPIDSDKVGICRKVKLNGDNNYYVVWYEVEKQNT 122
Query: 121 E-STSTTVLKDHQGKRVASR----KQELLELIDHFNIDVENPCVIMSQDKSREFLHSGND 175
+ +T ++ K + +V R K E+L+L+ ++ + P +I+ D R S N+
Sbjct: 123 KINTESSQKKTSKASKVEKRRRMKKNEVLDLLSKISLIADGPNIILQGDLLRIIDTSPNE 182
Query: 176 KDKFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME-HVEE 234
+ K +L +V + V E + + +KELS+ + I ++ + E
Sbjct: 183 RRK----ILDEV---------------SGVAEFDEKSEKAKKELSQAREYIEKIDIRINE 223
Query: 235 ITQDLQRLKKKLAWSWVYDV-DRQLKE-----QTLKIEKLKDRIPRCQAKIDSRHSILES 288
+ +L++LKK+ + Y V +++LK + K+E LK + + +I++ L+
Sbjct: 224 VRANLEKLKKEKEDAEKYTVYNKKLKVTKYILTSKKVEFLKMVLDETKDEIEA----LKE 279
Query: 289 LRDCFMKK----KAEIAVMVEKTSEVRRRKD--------ELQQSISLATKEKLELEGELV 336
++C+++ +EI + K +E+ + EL +SI ELE L
Sbjct: 280 TKNCYIQDISNIDSEIIGLKVKINELVNELNEKGSEEVMELHKSIK-------ELEVNLN 332
Query: 337 RNTSYMQKMVNRVKGL----EQQVHDIQE--QHVRNTQAEESEIEAKLKELQCEIDAANI 390
+ + ++ ++ +K E + +D+ E + + N + + + EA+ K L EI+ N
Sbjct: 333 NDKNALENAIDDLKHTLKMEESKNNDLNETKEKINNIRIDTLKKEAEAKVLIKEIEKLNE 392
Query: 391 TLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAF 448
++++ ++ KN+ ++S+ I D K+ +++E+ +L+ N+ +
Sbjct: 393 ERQNLEKKVEQSESQVKALKNQESKLSERINDTQKELYGLKNELNQLENTLNNRTFDY 450
>sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens
GN=SMC2 PE=1 SV=2
Length = 1197
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 99/435 (22%), Positives = 176/435 (40%), Gaps = 69/435 (15%)
Query: 45 NFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFI----KTGCSYAMVEVELKN-- 98
N ITG NGSGKS IL ++C G RA+ L+D + + G + A V + N
Sbjct: 28 NAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAGITKASVSITFDNSD 87
Query: 99 RGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPC 158
+ + E+ D I + R++ L + V + + +L ++V NP
Sbjct: 88 KKQSPLGFEVH-DEITVTRQVVIGGRNKYLING----VNANNTRVQDLFCSVGLNVNNPH 142
Query: 159 VIMSQDKSREFLH-------------SGNDKDKFKATLLQQVNDLLQSIYNHLNKGDALV 205
++ Q + + L+ +G ++K Q+ + K +A +
Sbjct: 143 FLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKT----------IEKKEAKL 192
Query: 206 LE----LEATIKPTEKELS-------ELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDV 254
E LE I PT ++L E Q+ +R +EH+ + Q L LA
Sbjct: 193 KEIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFL---LAEDTKVRS 249
Query: 255 DRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKT-SEVRRR 313
+LKE K+ KL++ + KI + + +E L K+ I +E +E +R
Sbjct: 250 AEELKEMQDKVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRSLEDALAEAQRV 309
Query: 314 KDELQQSISLATK-------EKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRN 366
+ Q + L K ++ ELE +V ++ + VK + +H +QE ++
Sbjct: 310 NTKSQSAFDLKKKNLACEESKRKELEKNMVEDSKTLAAKEKEVKKITDGLHALQEASNKD 369
Query: 367 TQAEESEIEAKLKELQCEIDAANITLSRMKEEDSA---LSEKLSKEKNEIRRISDEIEDY 423
+A L Q +A + LS ED A L+ ++ KN+I + E +
Sbjct: 370 AEA--------LAAAQQHFNAVSAGLSS--NEDGAEATLAGQMMACKNDISKAQTEAKQA 419
Query: 424 DKKCREIRSEIRELQ 438
K + + E++ Q
Sbjct: 420 QMKLKHAQQELKNKQ 434
>sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1
SV=1
Length = 1225
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 102/449 (22%), Positives = 186/449 (41%), Gaps = 63/449 (14%)
Query: 20 GTITRVRLENFMCHSSL-QIELGEWVNF--ITGQNGSGKSAILTALCIAFGCRAKGTQRA 76
G + + L NF + + ++ GE NF I G NGSGKS ++ A+ G R+ R+
Sbjct: 2 GRLVGLELSNFKSYRGVTKVGFGES-NFTSIIGPNGSGKSNMMDAISFVLGVRSNHL-RS 59
Query: 77 ATLKDFIKTGCSYAMVEVELKNRGEDAFKPE-----IF---GDSIIIERRITESTSTTVL 128
LKD I G + N G + P+ F G+ ++ RI T
Sbjct: 60 NILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSY 119
Query: 129 KDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKATLLQQVN 188
K GK V+ + ++I +EN +++ K++ FL D ++ A +++
Sbjct: 120 K-IDGKTVSYK---------DYSIFLENENILI---KAKNFLVFQGDVEQIAAQSPVELS 166
Query: 189 DLLQSIYNHLNKGDALVLELEA----------TIKPTEKELSELQRKIRNMEHVEEITQD 238
+ + + + E +IK + EL+ + EE +
Sbjct: 167 RMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKEGINKNEEYRKQ 226
Query: 239 LQR---LKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMK 295
L + L+K A +Y +++Q +E T K+ L I + KI++ L+ + F+K
Sbjct: 227 LDKKNELQKFQALWQLYHLEQQKEELTDKLSALNSEISSLKGKINNEMKSLQRSKSSFVK 286
Query: 296 KKAEIAVMVEKTSEVRRRKDEL----------QQS----ISLATKEKLELEGELVRNTSY 341
+ A I+ K + + K++L QQ+ IS K L+ +L R +Y
Sbjct: 287 ESAVISKQKSKLDYIFKDKEKLVSDLRLIKVPQQAAGKRISHIEKRIESLQKDLQRQKTY 346
Query: 342 MQKMVNRVKGLEQQVHDIQE---QHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEE 398
+++ ++K + + +E Q RN + E LK C + + E
Sbjct: 347 VERFETQLKVVTRSKEAFEEEIKQSARNYDKFKLN-ENDLKTYNC------LHEKYLTEG 399
Query: 399 DSALSEKLSKEKNEIRRISDEIEDYDKKC 427
S L EK++ N+ R I +E+E ++K+
Sbjct: 400 GSILEEKIAVLNNDKREIQEELERFNKRA 428
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 921 RQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTL 980
R+LT N ++ G + + I E++ + +K +D LSGGE++ + L
Sbjct: 1080 RELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAAL 1139
Query: 981 CFALALHEMTEAPFRAMDEFDVFMD 1005
A++ +PF +DE D +D
Sbjct: 1140 ALLFAINSYQPSPFFVLDEVDAALD 1164
>sp|Q8CG47|SMC4_MOUSE Structural maintenance of chromosomes protein 4 OS=Mus musculus
GN=Smc4 PE=1 SV=1
Length = 1286
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 153/363 (42%), Gaps = 68/363 (18%)
Query: 712 VDEISQEISNIQEEIQEKEIILEKLQFS-------MNEAEAKVEDLKLSFQSLCESAKEE 764
+DE + I+ Q I+ + L+K Q S + + E ++ DLK +++ + A+E
Sbjct: 911 LDECASAITKAQVAIKTADRNLKKAQDSVCRTEKEIKDTEKEINDLKTELKNIEDKAEEV 970
Query: 765 VDTFEAAEKELMEIEKN----LQ----TSESEKAHYEDVMRTR-----VVGAIKEAES-- 809
++ + AE L EI+K LQ E+E A +D + + + G I E S
Sbjct: 971 INNTKTAETSLPEIQKEHRNLLQELKVIQENEHALQKDALSIKLKLEQIDGHISEHNSKI 1030
Query: 810 QYRELELLR------QDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHES 863
+Y + E+ + +D+ + + + E+EA+ PE ++ ++ L
Sbjct: 1031 KYWQKEISKIKLHPVEDNPVETVAVLSQEELEAI-----KNPESITNEIALLEA------ 1079
Query: 864 HQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQL 923
Q E +L + E K+ + L Q+ A + + S F++ L++Q
Sbjct: 1080 -QCREMKPNLGAIAEYKKKEDLYLQRV---------AELDKITSERDNFRQAYEDLRKQR 1129
Query: 924 TWQFNGHLGKKGISGKININYEEKTLS----IEVKMPQDASSSNV-----------RDTR 968
+F G I+ K+ NY+ TL +E+ D S + +
Sbjct: 1130 LNEFMA--GFYVITNKLKENYQMLTLGGDAELELVDSLDPFSEGIMFSVRPPKKSWKKIF 1187
Query: 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWI 1028
LSGGE++ S+L ALH P MDE D +D + +S+ + + +Q+I
Sbjct: 1188 NLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF--KNVSIVAFYIYEQTKNAQFI 1245
Query: 1029 FIT 1031
I+
Sbjct: 1246 IIS 1248
>sp|Q8I1U7|SMC3_PLAF7 Structural maintenance of chromosomes protein 3 homolog OS=Plasmodium
falciparum (isolate 3D7) GN=PFD0685c PE=3 SV=1
Length = 1193
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 944 YEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVF 1003
Y +K I + + + + LSGGERS +C L L+++ F DE D
Sbjct: 1061 YIDKITGISINITSNDDEKMTYTIQELSGGERSIVAICLFLCLNKIDNFSFFFFDEIDAA 1120
Query: 1004 MDAISRKISLDTLVDFALAQGSQWIFIT 1031
+D I R +L L+ +G+Q+I T
Sbjct: 1121 LDTIHRD-NLSLLLKELAHRGTQFIITT 1147
>sp|Q90988|SMC2_CHICK Structural maintenance of chromosomes protein 2 OS=Gallus gallus
GN=SMC2 PE=2 SV=1
Length = 1189
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 22 ITRVRLENFMCHSSLQIELGEW---VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
I + LE F ++ + E+ ++ N ITG NGSGKS IL ++C G RA++
Sbjct: 3 IKSIVLEGFKSYAQ-RTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASS 61
Query: 79 LKDFI----KTGCSYAMVEVELKNRGEDAFKPEIF--GDSIIIERRITESTSTTVLKDHQ 132
L+D + + G + A V + N + P F D I I R++ L +
Sbjct: 62 LQDLVYKNGQAGVNKATVSITFDN-SDKKNSPLGFENNDEITITRQVIVGGRNKYLIN-- 118
Query: 133 GKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171
G ++ + + +L ++V NP ++ Q + + L+
Sbjct: 119 GMNASNNR--VQDLFGSVGLNVNNPHFLIMQGQITKVLN 155
>sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair Rad50 ATPase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rad50 PE=3 SV=1
Length = 880
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKD 81
I V++ NF H + + +N I GQNGSGKS++L A+ + K R +
Sbjct: 3 IEEVKVYNFRSHEETVVRFRKGINLIIGQNGSGKSSLLDAILVGLYWSKKLRLRGLKKDE 62
Query: 82 FIKTGCSYAM-VEVELKN 98
F + G +E++ +N
Sbjct: 63 FRRIGGKGGTRIEIKFEN 80
>sp|P73340|SMC_SYNY3 Chromosome partition protein Smc OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=smc PE=3 SV=1
Length = 1200
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 964 VRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDA 1006
VR +SGGE+S + L F AL +PF DE D+F+D
Sbjct: 1105 VRRLSSMSGGEKSLTALSFIFALQRYRPSPFYGFDEVDMFLDG 1147
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 102/480 (21%), Positives = 202/480 (42%), Gaps = 96/480 (20%)
Query: 22 ITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLK 80
+ R+ L +F + I ++G NGSGKS IL AL G RA L
Sbjct: 4 VKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAERLP 63
Query: 81 DFIKT------GCSYAMVEVELK-NRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQ 132
D + G S A V V + + GE+ +P + +I+ E T T LK +
Sbjct: 64 DLVNNTFKGNRGSSEASVSVTFELHDGENLSEPGANHNGNGNGAKISKEWTVTRRLKVTK 123
Query: 133 GKRVASRK---------QELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKATL 183
G +S EL E ++ I E +++ D +R + + N K++
Sbjct: 124 GGNYSSNYYINGETATVTELHEQLNELRIYPEGYNIVLQGDVTR--IITMNSKER----- 176
Query: 184 LQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQ-RKIRNMEHVEEITQDLQRL 242
+ I + L A V E + I T++ L+E+Q R+ R E+ + L+RL
Sbjct: 177 --------REIIDEL----AGVAEFDRKIVKTKETLTEVQDREERCQIIATELERTLERL 224
Query: 243 -----------------KKKLAWSWVYD---VDRQLKEQTLKIEKLKDRIPRCQAKIDSR 282
++K W+ V V++Q ++ ++E+ +++ + Q +D R
Sbjct: 225 AADRQKAEKYQALRQQVQEKQGWAKVIQYKAVEQQRQKLWGQLERDREQSQQIQQALDQR 284
Query: 283 HSILESLRDCFMKKKAEIAVMVE--------KTSEVRRRKDELQQSISLATKEKLELEGE 334
+++ + K A++ + E + + + ++D+LQQ + +G+
Sbjct: 285 SQAIQTQQTELEKLNAQVKALGEEEQLAVAAQLATQKAQRDQLQQRYN---------DGD 335
Query: 335 LVRNTSYMQKMVNRVKG-----LEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAAN 389
R + Q+ V +++ +Q +H QE+ NTQ L +L+ + +
Sbjct: 336 --RQITNHQQQVGQIQAEISQSQQQFLHIQQEKSFHNTQT--------LPQLEAAVQTSQ 385
Query: 390 ITLSRMKEEDSAL---SEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVT 446
L +++ + A+ SE +E+ ++ R ++++D + RS++ +L++ Q +T
Sbjct: 386 QQLEQLRHQAQAIASASEAWVQEQTQLSRTVNQLQD---ELIPQRSQLAQLEERQQQLLT 442
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1 SV=1
Length = 1418
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 955 MPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLD 1014
MP S N+ + LSGGE++ S+L ALH+ P MDE D +D R +S+
Sbjct: 1311 MPPKKSWRNITN---LSGGEKTLSSLALVFALHKYKPTPLYVMDEIDAALDF--RNVSIV 1365
Query: 1015 TLVDFALAQGSQWIFITPHD---------VGLVKQGERIK 1045
+ +Q+I I+ + VG+ K+ R K
Sbjct: 1366 ANYIKERTKNAQFIVISLRNNMFELAQQLVGVYKRDNRTK 1405
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 22 ITRVRLENFMCHSSLQIELGEW---VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT 78
I + LENF ++ Q+ +G + + + G NGSGKS ++ ++ FG RA R
Sbjct: 156 INELVLENFKSYAGKQV-VGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRA-NKMRQDR 213
Query: 79 LKDFI 83
L D I
Sbjct: 214 LSDLI 218
>sp|Q9SN90|SMC22_ARATH Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis
thaliana GN=SMC2-2 PE=2 SV=1
Length = 1171
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 22 ITRVRLENFMCHSSLQIELG--EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
I + LE F +++ + G N ITG NGSGKS IL ++C G RAA L
Sbjct: 3 IKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
Query: 80 KDFI----KTGCSYAMVEVELKN 98
++ + + G + A V V N
Sbjct: 63 QELVYKQGQAGITRATVSVTFDN 85
>sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis
thaliana GN=SMC2-1 PE=2 SV=2
Length = 1175
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 22 ITRVRLENFMCHSSLQIELG--EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL 79
I + LE F +++ + G N ITG NGSGKS IL ++C G RAA L
Sbjct: 3 IKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
Query: 80 KDFI----KTGCSYAMVEVELKN 98
++ + + G + A V V N
Sbjct: 63 QELVYKQGQAGITKATVSVTFDN 85
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWI 1028
LSGGE++ S+L ALH P MDE D +D + +S+ + + +Q+I
Sbjct: 1184 NLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF--KNVSIVAFYIYEQTKNAQFI 1241
Query: 1029 FIT 1031
I+
Sbjct: 1242 IIS 1244
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 22 ITRVRLENFMCHSSLQIELGEW---VNFITGQNGSGKSAILTALCIAFGCRAK 71
IT + +NF ++ +I LG + + I G NGSGKS ++ ++ FG RA+
Sbjct: 78 ITHIVNQNFKSYAGERI-LGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQ 129
>sp|O97594|SMC3_BOVIN Structural maintenance of chromosomes protein 3 OS=Bos taurus GN=SMC3
PE=1 SV=1
Length = 1218
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 932 GKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTE 991
G++G + ++ ++ + +++ +R+ + LSGG++S L A+ +
Sbjct: 1078 GERGSGPQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDP 1137
Query: 992 APFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFIT 1031
APF DE D +DA RK D +++ A+ +Q+I T
Sbjct: 1138 APFYLFDEIDQALDAQHRKAVSDMIMELAVH--AQFITTT 1175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,270,516
Number of Sequences: 539616
Number of extensions: 14938717
Number of successful extensions: 99480
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 2834
Number of HSP's that attempted gapping in prelim test: 76935
Number of HSP's gapped (non-prelim): 17345
length of query: 1054
length of database: 191,569,459
effective HSP length: 128
effective length of query: 926
effective length of database: 122,498,611
effective search space: 113433713786
effective search space used: 113433713786
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)