Query 001556
Match_columns 1054
No_of_seqs 433 out of 2764
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 03:44:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0250 DNA repair protein RAD 100.0 1E-100 3E-105 825.4 113.1 1032 12-1054 32-1074(1074)
2 COG1196 Smc Chromosome segrega 100.0 1.7E-81 3.8E-86 757.2 105.6 990 20-1051 1-1146(1163)
3 KOG0979 Structural maintenance 100.0 6.9E-74 1.5E-78 608.3 94.0 972 15-1049 15-1042(1072)
4 KOG0996 Structural maintenance 100.0 1.1E-69 2.3E-74 583.5 100.2 1004 15-1050 79-1274(1293)
5 KOG0933 Structural maintenance 100.0 7.5E-70 1.6E-74 573.9 91.1 988 20-1052 1-1162(1174)
6 KOG0018 Structural maintenance 100.0 6.7E-68 1.5E-72 565.8 95.4 976 19-1049 1-1127(1141)
7 KOG0964 Structural maintenance 100.0 5.1E-66 1.1E-70 541.9 97.3 976 20-1039 1-1164(1200)
8 TIGR02169 SMC_prok_A chromosom 100.0 2E-65 4.4E-70 645.5 109.5 982 21-1047 1-1150(1164)
9 TIGR02168 SMC_prok_B chromosom 100.0 1.1E-56 2.3E-61 569.7 114.9 990 21-1047 1-1165(1179)
10 PRK02224 chromosome segregatio 100.0 1E-47 2.2E-52 461.7 99.1 142 20-176 1-150 (880)
11 PRK03918 chromosome segregatio 100.0 1.3E-44 2.8E-49 436.9 101.3 141 20-172 1-143 (880)
12 PRK01156 chromosome segregatio 100.0 4E-42 8.6E-47 412.1 101.4 142 20-176 1-150 (895)
13 COG0419 SbcC ATPase involved i 100.0 5.5E-42 1.2E-46 406.1 96.1 146 20-176 1-155 (908)
14 TIGR00606 rad50 rad50. This fa 100.0 6.4E-36 1.4E-40 367.0 97.5 139 21-171 2-166 (1311)
15 PRK10246 exonuclease subunit S 100.0 1.1E-33 2.4E-38 336.9 105.0 147 20-176 1-168 (1047)
16 PRK04863 mukB cell division pr 100.0 1.6E-33 3.5E-38 334.8 105.2 107 940-1048 1337-1451(1486)
17 TIGR00618 sbcc exonuclease Sbc 100.0 1.4E-32 3E-37 331.6 99.9 147 20-176 1-164 (1042)
18 COG4717 Uncharacterized conser 100.0 1.7E-29 3.6E-34 265.9 82.5 169 867-1049 810-984 (984)
19 TIGR02680 conserved hypothetic 100.0 7.7E-26 1.7E-30 275.0 101.1 84 966-1053 1244-1335(1353)
20 PF13514 AAA_27: AAA domain 100.0 2.5E-27 5.4E-32 287.5 88.0 127 915-1049 977-1111(1111)
21 KOG0962 DNA repair protein RAD 100.0 3E-26 6.4E-31 257.0 84.0 145 19-175 1-169 (1294)
22 TIGR03185 DNA_S_dndD DNA sulfu 100.0 1.4E-26 3E-31 264.1 66.6 147 20-173 1-165 (650)
23 COG4913 Uncharacterized protei 100.0 3.7E-23 8E-28 212.6 83.0 93 19-120 14-134 (1104)
24 PRK10869 recombination and rep 100.0 1.5E-27 3.3E-32 262.0 46.6 176 869-1049 318-508 (553)
25 COG0497 RecN ATPase involved i 100.0 2.9E-25 6.3E-30 231.3 47.2 147 901-1051 354-511 (557)
26 PHA02562 46 endonuclease subun 100.0 2.1E-25 4.5E-30 255.6 42.5 142 19-176 1-151 (562)
27 PF02463 SMC_N: RecF/RecN/SMC 99.9 2.1E-26 4.5E-31 227.6 18.8 126 21-154 1-134 (220)
28 PF12128 DUF3584: Protein of u 99.9 2.4E-16 5.1E-21 192.3 99.3 62 970-1036 1121-1187(1201)
29 COG3096 MukB Uncharacterized p 99.9 1.4E-15 3.1E-20 157.7 80.4 119 915-1039 1300-1442(1480)
30 TIGR00634 recN DNA repair prot 99.9 1.3E-21 2.8E-26 219.0 37.4 188 21-230 1-202 (563)
31 COG1196 Smc Chromosome segrega 99.9 7E-14 1.5E-18 171.0 85.3 169 195-363 171-339 (1163)
32 KOG0250 DNA repair protein RAD 99.9 3.4E-15 7.5E-20 164.7 63.5 248 185-433 217-465 (1074)
33 TIGR02168 SMC_prok_B chromosom 99.8 9E-14 1.9E-18 177.6 80.2 161 198-358 167-327 (1179)
34 TIGR02169 SMC_prok_A chromosom 99.8 2.8E-13 6.1E-18 172.2 80.4 77 843-923 958-1038(1164)
35 cd03273 ABC_SMC2_euk Eukaryoti 99.8 9.1E-19 2E-23 175.9 16.2 149 20-173 1-157 (251)
36 cd03275 ABC_SMC1_euk Eukaryoti 99.8 3.3E-18 7.3E-23 170.9 14.7 139 22-175 1-146 (247)
37 TIGR00634 recN DNA repair prot 99.8 1.2E-15 2.7E-20 171.1 36.2 198 842-1048 300-517 (563)
38 PRK14079 recF recombination pr 99.8 6.8E-17 1.5E-21 168.5 23.7 124 20-171 1-124 (349)
39 KOG0996 Structural maintenance 99.8 5.8E-11 1.2E-15 131.7 69.9 98 605-702 738-845 (1293)
40 PRK02224 chromosome segregatio 99.8 4.5E-11 9.8E-16 145.1 77.3 127 916-1050 736-870 (880)
41 PRK00064 recF recombination pr 99.8 1.4E-16 3.1E-21 167.2 23.8 101 20-136 1-102 (361)
42 cd03242 ABC_RecF RecF is a rec 99.7 8.8E-17 1.9E-21 162.7 17.9 100 22-137 1-101 (270)
43 PHA02562 46 endonuclease subun 99.7 1.8E-14 3.8E-19 165.6 38.7 123 916-1048 422-551 (562)
44 KOG0933 Structural maintenance 99.7 6.6E-10 1.4E-14 121.2 67.2 236 684-933 808-1057(1174)
45 cd03241 ABC_RecN RecN ATPase i 99.7 9.6E-17 2.1E-21 163.0 13.0 113 22-147 1-120 (276)
46 cd03277 ABC_SMC5_euk Eukaryoti 99.7 1E-16 2.2E-21 154.3 11.8 80 20-99 1-80 (213)
47 KOG0161 Myosin class II heavy 99.7 1.2E-09 2.5E-14 132.5 72.5 160 633-796 1299-1458(1930)
48 PF13555 AAA_29: P-loop contai 99.7 6.2E-17 1.3E-21 115.0 6.2 49 22-70 1-51 (62)
49 KOG0161 Myosin class II heavy 99.7 3.1E-09 6.7E-14 128.9 73.2 105 634-743 1244-1348(1930)
50 TIGR00611 recf recF protein. A 99.7 2.6E-14 5.7E-19 149.4 24.8 77 20-99 1-77 (365)
51 COG1195 RecF Recombinational D 99.7 8.6E-15 1.9E-19 146.4 20.0 134 20-179 1-135 (363)
52 KOG0964 Structural maintenance 99.7 1.2E-08 2.7E-13 111.0 68.5 129 195-323 169-297 (1200)
53 cd03272 ABC_SMC3_euk Eukaryoti 99.6 2E-15 4.3E-20 152.1 14.0 142 22-172 1-148 (243)
54 cd03239 ABC_SMC_head The struc 99.6 5E-16 1.1E-20 144.7 8.2 78 22-99 1-82 (178)
55 cd03276 ABC_SMC6_euk Eukaryoti 99.6 3E-15 6.5E-20 142.7 9.6 79 22-100 1-79 (198)
56 KOG0018 Structural maintenance 99.5 4.7E-08 1E-12 108.4 56.6 88 236-323 200-287 (1141)
57 KOG0979 Structural maintenance 99.5 8.5E-09 1.8E-13 113.4 50.1 179 181-359 180-358 (1072)
58 cd03279 ABC_sbcCD SbcCD and ot 99.5 6.5E-14 1.4E-18 136.6 10.0 90 20-119 1-95 (213)
59 PRK03918 chromosome segregatio 99.5 1.5E-06 3.2E-11 106.5 77.1 88 963-1052 782-871 (880)
60 PF13476 AAA_23: AAA domain; P 99.5 1E-13 2.2E-18 136.6 9.2 49 24-72 1-49 (202)
61 cd03240 ABC_Rad50 The catalyti 99.5 2.3E-13 4.9E-18 130.8 11.2 90 22-120 1-92 (204)
62 PRK04863 mukB cell division pr 99.4 5.9E-06 1.3E-10 101.3 68.4 53 18-70 3-55 (1486)
63 PF12128 DUF3584: Protein of u 99.4 8.6E-06 1.9E-10 100.9 70.5 40 37-77 13-52 (1201)
64 TIGR00606 rad50 rad50. This fa 99.3 1.7E-05 3.7E-10 99.7 73.4 72 964-1035 1194-1271(1311)
65 cd03278 ABC_SMC_barmotin Barmo 99.3 5.5E-12 1.2E-16 120.3 8.5 78 22-99 1-85 (197)
66 cd03274 ABC_SMC4_euk Eukaryoti 99.3 1.4E-11 3.1E-16 118.9 8.4 78 20-98 1-85 (212)
67 KOG4674 Uncharacterized conser 99.2 4E-05 8.7E-10 92.5 68.3 108 633-744 1234-1341(1822)
68 KOG4674 Uncharacterized conser 99.1 8.8E-05 1.9E-09 89.7 69.5 60 762-822 1232-1291(1822)
69 PF11398 DUF2813: Protein of u 99.1 2.1E-09 4.6E-14 110.1 17.1 77 20-99 1-83 (373)
70 cd03276 ABC_SMC6_euk Eukaryoti 99.1 2.5E-10 5.5E-15 109.0 8.7 88 966-1053 106-194 (198)
71 PF13166 AAA_13: AAA domain 99.1 1.8E-07 3.8E-12 111.2 34.5 68 967-1034 498-571 (712)
72 COG3950 Predicted ATP-binding 99.0 9.5E-11 2.1E-15 112.6 3.2 50 20-69 1-51 (440)
73 COG5293 Predicted ATPase [Gene 99.0 1.7E-05 3.7E-10 79.4 35.9 50 20-71 4-65 (591)
74 PRK01156 chromosome segregatio 98.9 0.00056 1.2E-08 83.6 76.8 84 964-1048 796-884 (895)
75 cd03277 ABC_SMC5_euk Eukaryoti 98.9 4.4E-09 9.6E-14 101.6 9.2 88 966-1053 123-211 (213)
76 PF01576 Myosin_tail_1: Myosin 98.9 2.3E-10 4.9E-15 133.7 0.0 43 633-675 551-593 (859)
77 cd03227 ABC_Class2 ABC-type Cl 98.9 1.5E-09 3.3E-14 100.4 5.4 68 25-96 2-71 (162)
78 PF10174 Cast: RIM-binding pro 98.8 0.00058 1.3E-08 77.7 69.3 32 873-904 567-598 (775)
79 PF00261 Tropomyosin: Tropomyo 98.8 1.7E-05 3.7E-10 78.0 30.9 48 256-303 64-111 (237)
80 cd03239 ABC_SMC_head The struc 98.8 1.1E-08 2.4E-13 95.6 8.1 78 970-1048 95-172 (178)
81 PRK04778 septation ring format 98.8 0.00068 1.5E-08 76.9 54.4 82 845-932 450-531 (569)
82 PF00261 Tropomyosin: Tropomyo 98.8 1.9E-05 4.1E-10 77.7 30.6 123 662-789 14-136 (237)
83 cd03278 ABC_SMC_barmotin Barmo 98.8 6.5E-09 1.4E-13 99.3 5.6 83 966-1050 110-192 (197)
84 PF13166 AAA_13: AAA domain 98.8 0.00012 2.5E-09 87.4 42.0 42 29-70 1-44 (712)
85 TIGR02680 conserved hypothetic 98.8 0.0025 5.4E-08 80.0 64.1 79 20-98 2-94 (1353)
86 PF04310 MukB: MukB N-terminal 98.7 1.3E-08 2.8E-13 90.3 5.3 50 18-67 3-52 (227)
87 COG3840 ThiQ ABC-type thiamine 98.7 1.8E-08 4E-13 87.9 5.4 73 967-1043 127-199 (231)
88 PF01576 Myosin_tail_1: Myosin 98.7 2.2E-09 4.8E-14 125.5 -0.4 55 846-904 795-849 (859)
89 COG1136 SalX ABC-type antimicr 98.7 1.7E-08 3.6E-13 95.1 5.2 79 966-1051 139-217 (226)
90 COG1122 CbiO ABC-type cobalt t 98.7 1.6E-08 3.4E-13 97.8 4.9 75 966-1044 135-209 (235)
91 cd03240 ABC_Rad50 The catalyti 98.7 2.7E-08 5.9E-13 95.8 6.5 72 966-1037 112-186 (204)
92 cd03275 ABC_SMC1_euk Eukaryoti 98.7 2E-08 4.4E-13 100.6 5.1 85 962-1048 148-233 (247)
93 COG1121 ZnuC ABC-type Mn/Zn tr 98.6 4.5E-08 9.7E-13 93.8 6.6 74 966-1044 136-209 (254)
94 KOG0994 Extracellular matrix g 98.6 0.0023 4.9E-08 72.4 55.8 11 180-190 1169-1179(1758)
95 COG1106 Predicted ATPases [Gen 98.6 2.7E-08 5.9E-13 101.2 4.2 50 21-71 1-51 (371)
96 COG1126 GlnQ ABC-type polar am 98.6 7.7E-08 1.7E-12 87.3 6.0 65 967-1036 134-198 (240)
97 PF13558 SbcCD_C: Putative exo 98.6 6E-08 1.3E-12 78.2 4.8 54 964-1017 27-89 (90)
98 COG4637 Predicted ATPase [Gene 98.6 2.3E-08 5.1E-13 95.6 2.4 45 20-65 1-45 (373)
99 PF07888 CALCOCO1: Calcium bin 98.6 0.002 4.3E-08 69.1 38.4 51 635-685 143-193 (546)
100 cd03273 ABC_SMC2_euk Eukaryoti 98.5 7.6E-08 1.7E-12 97.0 5.5 79 966-1046 163-241 (251)
101 PF13175 AAA_15: AAA ATPase do 98.5 7E-08 1.5E-12 107.4 5.6 71 965-1035 337-413 (415)
102 cd03259 ABC_Carb_Solutes_like 98.5 7.8E-08 1.7E-12 94.6 4.8 73 967-1043 128-200 (213)
103 COG3593 Predicted ATP-dependen 98.5 8.5E-08 1.8E-12 103.3 5.3 50 20-69 1-50 (581)
104 cd03274 ABC_SMC4_euk Eukaryoti 98.5 1.1E-07 2.5E-12 91.9 5.2 82 966-1049 124-205 (212)
105 COG1120 FepC ABC-type cobalami 98.5 1.5E-07 3.3E-12 90.8 5.8 76 965-1044 134-209 (258)
106 cd03293 ABC_NrtD_SsuB_transpor 98.5 1.2E-07 2.5E-12 93.9 5.3 72 968-1043 130-201 (220)
107 cd03235 ABC_Metallic_Cations A 98.5 1.2E-07 2.5E-12 93.4 5.2 72 967-1043 130-201 (213)
108 PRK04778 septation ring format 98.5 0.0027 5.8E-08 72.2 40.1 32 869-900 477-508 (569)
109 TIGR01184 ntrCD nitrate transp 98.5 1.2E-07 2.6E-12 94.1 4.7 73 967-1043 112-184 (230)
110 cd03225 ABC_cobalt_CbiO_domain 98.5 1.4E-07 3E-12 92.7 5.1 72 967-1043 132-203 (211)
111 cd00267 ABC_ATPase ABC (ATP-bi 98.5 1.4E-07 3E-12 87.4 4.7 66 970-1040 81-146 (157)
112 cd03237 ABC_RNaseL_inhibitor_d 98.5 1.4E-07 3.1E-12 93.9 4.7 73 967-1043 113-185 (246)
113 cd03256 ABC_PhnC_transporter A 98.5 1.9E-07 4E-12 94.2 5.5 73 967-1043 142-214 (241)
114 TIGR00960 3a0501s02 Type II (G 98.5 1.5E-07 3.3E-12 92.7 4.8 71 967-1042 136-206 (216)
115 PRK11247 ssuB aliphatic sulfon 98.5 1.6E-07 3.5E-12 94.2 5.0 73 967-1043 131-203 (257)
116 COG3910 Predicted ATPase [Gene 98.4 1.7E-07 3.6E-12 82.4 4.1 37 37-73 32-68 (233)
117 PRK11248 tauB taurine transpor 98.4 1.7E-07 3.8E-12 94.4 4.8 73 967-1043 126-198 (255)
118 TIGR02211 LolD_lipo_ex lipopro 98.4 2.5E-07 5.4E-12 91.8 5.8 67 967-1037 139-205 (221)
119 TIGR01277 thiQ thiamine ABC tr 98.4 2.4E-07 5.2E-12 91.0 5.5 73 967-1043 126-198 (213)
120 TIGR01166 cbiO cobalt transpor 98.4 2.8E-07 6E-12 88.7 5.8 64 967-1035 125-188 (190)
121 cd03214 ABC_Iron-Siderophores_ 98.4 2.6E-07 5.6E-12 87.7 5.4 73 967-1043 95-167 (180)
122 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.4 2.1E-07 4.6E-12 92.0 5.1 67 967-1037 138-204 (218)
123 cd03298 ABC_ThiQ_thiamine_tran 98.4 2.3E-07 5E-12 91.1 5.3 72 968-1043 127-198 (211)
124 cd03261 ABC_Org_Solvent_Resist 98.4 1.8E-07 3.9E-12 93.6 4.6 72 967-1042 134-205 (235)
125 cd03230 ABC_DR_subfamily_A Thi 98.4 2.4E-07 5.2E-12 87.2 5.1 68 970-1042 96-163 (173)
126 TIGR02673 FtsE cell division A 98.4 1.9E-07 4.1E-12 92.1 4.5 72 967-1043 135-206 (214)
127 cd03296 ABC_CysA_sulfate_impor 98.4 2.3E-07 4.9E-12 93.1 5.1 73 967-1043 134-206 (239)
128 cd03265 ABC_DrrA DrrA is the A 98.4 2.2E-07 4.7E-12 91.9 4.9 73 967-1043 129-201 (220)
129 cd03231 ABC_CcmA_heme_exporter 98.4 3E-07 6.5E-12 89.1 5.7 72 967-1043 123-194 (201)
130 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.4 2.1E-07 4.6E-12 91.8 4.7 73 967-1044 140-212 (224)
131 cd03227 ABC_Class2 ABC-type Cl 98.4 3.1E-07 6.7E-12 85.1 5.5 71 968-1039 76-146 (162)
132 COG1124 DppF ABC-type dipeptid 98.4 4.3E-07 9.4E-12 84.6 6.2 66 966-1035 138-203 (252)
133 cd03226 ABC_cobalt_CbiO_domain 98.4 2.5E-07 5.5E-12 90.2 5.1 72 967-1043 124-195 (205)
134 cd03297 ABC_ModC_molybdenum_tr 98.4 2.4E-07 5.1E-12 91.2 4.8 73 967-1043 129-201 (214)
135 PRK13538 cytochrome c biogenes 98.4 4.2E-07 9.1E-12 88.4 6.5 76 967-1049 127-202 (204)
136 cd03268 ABC_BcrA_bacitracin_re 98.4 2E-07 4.4E-12 91.2 4.3 72 967-1043 124-195 (208)
137 cd03257 ABC_NikE_OppD_transpor 98.4 2.6E-07 5.6E-12 92.3 5.1 73 967-1043 143-215 (228)
138 TIGR02315 ABC_phnC phosphonate 98.4 3.3E-07 7.2E-12 92.5 5.8 73 967-1043 143-215 (243)
139 TIGR03864 PQQ_ABC_ATP ABC tran 98.4 3.9E-07 8.4E-12 91.2 6.2 68 967-1038 130-197 (236)
140 cd03229 ABC_Class3 This class 98.4 2.6E-07 5.6E-12 87.5 4.6 68 970-1041 101-168 (178)
141 cd03269 ABC_putative_ATPase Th 98.4 2.1E-07 4.6E-12 91.3 4.2 72 967-1043 126-197 (210)
142 PF07888 CALCOCO1: Calcium bin 98.4 0.0058 1.3E-07 65.7 37.6 17 990-1006 498-514 (546)
143 COG1116 TauB ABC-type nitrate/ 98.4 3.2E-07 7E-12 86.4 4.9 68 967-1038 128-195 (248)
144 COG0444 DppD ABC-type dipeptid 98.4 3.9E-07 8.4E-12 89.4 5.6 76 967-1046 151-226 (316)
145 PRK11629 lolD lipoprotein tran 98.4 3.9E-07 8.4E-12 91.0 5.8 69 967-1039 143-211 (233)
146 cd03260 ABC_PstB_phosphate_tra 98.4 2.7E-07 5.9E-12 91.8 4.7 71 967-1043 139-209 (227)
147 KOG0971 Microtubule-associated 98.4 0.0051 1.1E-07 68.0 36.5 285 635-932 255-550 (1243)
148 cd03241 ABC_RecN RecN ATPase i 98.4 6.6E-07 1.4E-11 91.3 7.5 69 967-1037 168-236 (276)
149 cd03301 ABC_MalK_N The N-termi 98.4 3.3E-07 7.1E-12 90.3 5.1 73 967-1043 128-200 (213)
150 cd03262 ABC_HisP_GlnQ_permease 98.4 3.2E-07 7E-12 90.4 4.9 72 967-1043 133-204 (213)
151 cd03218 ABC_YhbG The ABC trans 98.4 3.3E-07 7.1E-12 91.7 5.0 72 967-1043 131-202 (232)
152 PRK10771 thiQ thiamine transpo 98.4 3.7E-07 8.1E-12 91.0 5.3 73 967-1043 127-199 (232)
153 TIGR02770 nickel_nikD nickel i 98.4 3.3E-07 7.2E-12 91.2 4.9 73 967-1043 123-195 (230)
154 COG1125 OpuBA ABC-type proline 98.4 4.9E-07 1.1E-11 84.1 5.5 76 966-1045 132-207 (309)
155 cd03258 ABC_MetN_methionine_tr 98.4 3.3E-07 7.2E-12 91.6 4.9 73 967-1043 138-210 (233)
156 PRK14245 phosphate ABC transpo 98.4 3.5E-07 7.5E-12 92.5 5.1 71 967-1043 144-214 (250)
157 PRK10584 putative ABC transpor 98.4 3.3E-07 7.2E-12 91.3 4.8 67 967-1037 144-210 (228)
158 cd03266 ABC_NatA_sodium_export 98.4 2.9E-07 6.2E-12 91.1 4.2 72 967-1043 134-205 (218)
159 cd03219 ABC_Mj1267_LivG_branch 98.4 3.5E-07 7.5E-12 91.8 4.8 72 967-1043 141-212 (236)
160 cd03263 ABC_subfamily_A The AB 98.4 3.4E-07 7.3E-12 90.7 4.6 71 967-1043 131-201 (220)
161 cd03267 ABC_NatA_like Similar 98.4 3.5E-07 7.7E-12 91.2 4.8 73 967-1043 151-223 (236)
162 PRK11831 putative ABC transpor 98.4 3.4E-07 7.3E-12 93.4 4.6 69 967-1039 141-209 (269)
163 PRK13539 cytochrome c biogenes 98.4 6.9E-07 1.5E-11 87.1 6.6 77 967-1052 125-201 (207)
164 COG4988 CydD ABC-type transpor 98.4 7.3E-07 1.6E-11 94.6 7.1 68 968-1041 455-522 (559)
165 cd03294 ABC_Pro_Gly_Bertaine T 98.4 4.2E-07 9.2E-12 92.5 5.2 73 967-1043 158-230 (269)
166 PRK14250 phosphate ABC transpo 98.4 4.4E-07 9.4E-12 91.0 5.2 73 967-1043 129-201 (241)
167 cd03264 ABC_drug_resistance_li 98.4 4E-07 8.8E-12 89.4 4.8 71 967-1043 128-198 (211)
168 TIGR01188 drrA daunorubicin re 98.3 3.9E-07 8.3E-12 94.6 4.9 73 967-1044 122-194 (302)
169 PRK13540 cytochrome c biogenes 98.3 6.9E-07 1.5E-11 86.6 6.3 68 967-1039 125-192 (200)
170 COG4181 Predicted ABC-type tra 98.3 5.7E-07 1.2E-11 77.8 5.0 74 966-1044 143-217 (228)
171 PRK13637 cbiO cobalt transport 98.3 4.4E-07 9.5E-12 93.2 5.1 74 967-1044 142-215 (287)
172 PRK15112 antimicrobial peptide 98.3 4.3E-07 9.3E-12 92.5 5.0 73 967-1043 147-219 (267)
173 PRK10575 iron-hydroxamate tran 98.3 5.1E-07 1.1E-11 91.9 5.4 73 967-1043 145-217 (265)
174 PRK10619 histidine/lysine/argi 98.3 4.4E-07 9.6E-12 92.1 5.0 73 967-1044 150-222 (257)
175 cd03216 ABC_Carb_Monos_I This 98.3 4.8E-07 1E-11 83.9 4.7 68 970-1042 83-150 (163)
176 PRK11022 dppD dipeptide transp 98.3 4.6E-07 1E-11 94.4 5.2 74 967-1044 151-224 (326)
177 PRK11614 livF leucine/isoleuci 98.3 4.5E-07 9.8E-12 90.9 5.0 72 967-1043 135-206 (237)
178 cd03215 ABC_Carb_Monos_II This 98.3 4.2E-07 9E-12 86.5 4.4 68 970-1042 105-172 (182)
179 TIGR01186 proV glycine betaine 98.3 4.2E-07 9E-12 95.2 4.8 74 967-1044 127-200 (363)
180 PRK13645 cbiO cobalt transport 98.3 4.6E-07 9.9E-12 93.6 5.0 73 967-1043 148-220 (289)
181 cd03292 ABC_FtsE_transporter F 98.3 4.6E-07 9.9E-12 89.4 4.9 70 967-1041 134-203 (214)
182 PRK14258 phosphate ABC transpo 98.3 4.8E-07 1E-11 91.9 5.1 74 967-1044 148-221 (261)
183 PRK14268 phosphate ABC transpo 98.3 4.4E-07 9.4E-12 92.1 4.8 72 967-1044 152-223 (258)
184 cd03295 ABC_OpuCA_Osmoprotecti 98.3 4.3E-07 9.4E-12 91.3 4.6 73 967-1043 133-205 (242)
185 COG4525 TauB ABC-type taurine 98.3 8.2E-07 1.8E-11 78.8 5.5 67 966-1036 129-195 (259)
186 TIGR01187 potA spermidine/putr 98.3 4.6E-07 1E-11 94.6 4.8 74 967-1044 98-171 (325)
187 PRK10070 glycine betaine trans 98.3 4.8E-07 1E-11 96.0 4.9 74 967-1044 162-235 (400)
188 PRK14247 phosphate ABC transpo 98.3 5.5E-07 1.2E-11 91.2 5.2 71 967-1043 144-214 (250)
189 PRK13643 cbiO cobalt transport 98.3 5.2E-07 1.1E-11 92.8 5.1 73 967-1044 142-214 (288)
190 TIGR03410 urea_trans_UrtE urea 98.3 5E-07 1.1E-11 90.1 4.9 74 967-1044 129-202 (230)
191 TIGR00972 3a0107s01c2 phosphat 98.3 5E-07 1.1E-11 91.2 4.9 71 967-1043 142-212 (247)
192 cd03224 ABC_TM1139_LivF_branch 98.3 4.8E-07 1E-11 89.9 4.7 72 967-1043 130-201 (222)
193 PRK13631 cbiO cobalt transport 98.3 5.2E-07 1.1E-11 93.6 5.1 73 967-1044 174-246 (320)
194 PRK14242 phosphate transporter 98.3 5.3E-07 1.1E-11 91.5 5.0 72 967-1044 147-218 (253)
195 TIGR01189 ccmA heme ABC export 98.3 7.8E-07 1.7E-11 86.2 5.9 64 967-1035 125-188 (198)
196 TIGR02323 CP_lyasePhnK phospho 98.3 4.9E-07 1.1E-11 91.7 4.7 67 967-1037 146-212 (253)
197 PRK10253 iron-enterobactin tra 98.3 6.4E-07 1.4E-11 91.2 5.5 74 967-1044 141-214 (265)
198 cd03272 ABC_SMC3_euk Eukaryoti 98.3 5.3E-07 1.2E-11 91.0 4.9 76 966-1044 155-230 (243)
199 PRK13646 cbiO cobalt transport 98.3 5.7E-07 1.2E-11 92.5 5.2 74 967-1044 143-216 (286)
200 cd03245 ABCC_bacteriocin_expor 98.3 6.6E-07 1.4E-11 88.6 5.4 70 967-1043 138-207 (220)
201 PRK11264 putative amino-acid A 98.3 5.5E-07 1.2E-11 91.3 5.0 72 967-1043 142-213 (250)
202 PRK13543 cytochrome c biogenes 98.3 9.2E-07 2E-11 86.8 6.3 73 967-1044 135-207 (214)
203 PRK14269 phosphate ABC transpo 98.3 6.5E-07 1.4E-11 90.2 5.4 71 967-1043 140-210 (246)
204 PRK11308 dppF dipeptide transp 98.3 5.2E-07 1.1E-11 94.0 4.7 74 967-1044 152-225 (327)
205 cd03222 ABC_RNaseL_inhibitor T 98.3 5.9E-07 1.3E-11 83.4 4.5 65 970-1038 72-136 (177)
206 PRK10908 cell division protein 98.3 6.3E-07 1.4E-11 88.8 5.1 72 967-1043 135-206 (222)
207 PRK13634 cbiO cobalt transport 98.3 5.9E-07 1.3E-11 92.5 5.0 74 967-1044 143-216 (290)
208 COG1131 CcmA ABC-type multidru 98.3 6.6E-07 1.4E-11 91.4 5.3 77 966-1046 133-209 (293)
209 TIGR01288 nodI ATP-binding ABC 98.3 5.5E-07 1.2E-11 93.5 4.7 72 967-1043 133-204 (303)
210 PRK10247 putative ABC transpor 98.3 7.7E-07 1.7E-11 88.1 5.6 67 967-1037 135-201 (225)
211 PRK10418 nikD nickel transport 98.3 6.2E-07 1.3E-11 90.8 5.0 73 967-1043 138-210 (254)
212 PRK11701 phnK phosphonate C-P 98.3 6.9E-07 1.5E-11 90.8 5.3 73 967-1043 149-221 (258)
213 PRK09544 znuC high-affinity zi 98.3 5.5E-07 1.2E-11 90.3 4.6 73 967-1043 118-190 (251)
214 TIGR02314 ABC_MetN D-methionin 98.3 5.9E-07 1.3E-11 93.5 4.9 74 967-1044 138-211 (343)
215 PRK14262 phosphate ABC transpo 98.3 6E-07 1.3E-11 90.9 4.8 72 967-1044 144-215 (250)
216 TIGR03740 galliderm_ABC gallid 98.3 5.3E-07 1.1E-11 89.4 4.3 72 967-1043 122-193 (223)
217 PRK14273 phosphate ABC transpo 98.3 6.9E-07 1.5E-11 90.6 5.3 72 967-1044 148-219 (254)
218 COG1127 Ttg2A ABC-type transpo 98.3 9.4E-07 2E-11 81.9 5.4 77 966-1046 142-218 (263)
219 PRK11650 ugpC glycerol-3-phosp 98.3 6.1E-07 1.3E-11 94.4 4.8 74 967-1044 132-205 (356)
220 cd03246 ABCC_Protease_Secretio 98.3 9.9E-07 2.1E-11 83.1 5.8 63 970-1037 97-159 (173)
221 PRK09984 phosphonate/organopho 98.3 7.8E-07 1.7E-11 90.6 5.5 73 967-1043 150-222 (262)
222 PRK11231 fecE iron-dicitrate t 98.3 7.2E-07 1.6E-11 90.4 5.2 72 967-1043 136-207 (255)
223 TIGR03771 anch_rpt_ABC anchore 98.3 6.4E-07 1.4E-11 88.4 4.7 72 967-1043 111-182 (223)
224 PRK15079 oligopeptide ABC tran 98.3 6.5E-07 1.4E-11 93.3 4.9 74 967-1044 159-232 (331)
225 PRK13651 cobalt transporter AT 98.3 6E-07 1.3E-11 92.6 4.6 74 966-1044 162-235 (305)
226 PRK13548 hmuV hemin importer A 98.3 7.4E-07 1.6E-11 90.2 5.2 77 967-1043 132-210 (258)
227 cd03232 ABC_PDR_domain2 The pl 98.3 1E-06 2.2E-11 84.6 5.8 62 969-1035 108-169 (192)
228 PRK11153 metN DL-methionine tr 98.3 6.2E-07 1.4E-11 94.4 4.8 73 967-1043 138-210 (343)
229 TIGR03005 ectoine_ehuA ectoine 98.3 6.9E-07 1.5E-11 90.5 4.9 73 967-1043 144-216 (252)
230 PRK13638 cbiO cobalt transport 98.3 7.6E-07 1.6E-11 91.0 5.3 72 967-1043 134-205 (271)
231 PRK14274 phosphate ABC transpo 98.3 7E-07 1.5E-11 90.8 5.0 73 966-1044 152-224 (259)
232 PRK14270 phosphate ABC transpo 98.3 6.7E-07 1.5E-11 90.5 4.8 72 967-1044 145-216 (251)
233 PRK10744 pstB phosphate transp 98.3 7.4E-07 1.6E-11 90.5 5.1 71 967-1043 154-224 (260)
234 COG4619 ABC-type uncharacteriz 98.3 1.2E-06 2.6E-11 75.6 5.3 79 967-1051 131-209 (223)
235 PRK09452 potA putrescine/sperm 98.3 6.6E-07 1.4E-11 94.5 4.7 74 967-1044 142-215 (375)
236 PRK15056 manganese/iron transp 98.3 7.5E-07 1.6E-11 91.0 5.0 73 967-1044 140-212 (272)
237 cd03279 ABC_sbcCD SbcCD and ot 98.3 1.3E-06 2.9E-11 85.4 6.5 81 966-1047 120-206 (213)
238 PRK14239 phosphate transporter 98.3 8E-07 1.7E-11 90.2 5.1 72 967-1044 146-217 (252)
239 PRK09493 glnQ glutamine ABC tr 98.3 7.5E-07 1.6E-11 89.5 4.8 72 967-1043 134-205 (240)
240 PRK11300 livG leucine/isoleuci 98.3 7.9E-07 1.7E-11 90.4 5.0 73 967-1043 151-223 (255)
241 PRK14240 phosphate transporter 98.3 8.7E-07 1.9E-11 89.7 5.3 71 967-1043 144-214 (250)
242 KOG0977 Nuclear envelope prote 98.3 0.0034 7.4E-08 67.3 31.8 33 197-229 43-75 (546)
243 COG4674 Uncharacterized ABC-ty 98.3 3.3E-07 7.2E-12 81.2 1.9 38 26-63 14-52 (249)
244 PRK13649 cbiO cobalt transport 98.3 7.4E-07 1.6E-11 91.7 4.8 72 967-1043 143-214 (280)
245 PRK14259 phosphate ABC transpo 98.3 8E-07 1.7E-11 90.5 4.9 71 967-1043 152-222 (269)
246 PRK11000 maltose/maltodextrin 98.3 7.1E-07 1.5E-11 94.8 4.7 73 967-1043 131-203 (369)
247 PRK13547 hmuV hemin importer A 98.3 9E-07 1.9E-11 89.8 5.2 77 967-1043 143-224 (272)
248 PRK14244 phosphate ABC transpo 98.3 8.3E-07 1.8E-11 89.8 5.0 71 967-1043 147-217 (251)
249 PRK14241 phosphate transporter 98.3 7.9E-07 1.7E-11 90.3 4.9 73 966-1044 145-217 (258)
250 PRK14255 phosphate ABC transpo 98.3 8.7E-07 1.9E-11 89.8 5.2 72 967-1044 146-217 (252)
251 TIGR03411 urea_trans_UrtD urea 98.3 7.6E-07 1.6E-11 89.7 4.7 71 967-1043 141-211 (242)
252 cd03233 ABC_PDR_domain1 The pl 98.3 1.1E-06 2.5E-11 85.0 5.7 65 966-1034 115-179 (202)
253 PRK14235 phosphate transporter 98.3 8.6E-07 1.9E-11 90.3 5.1 71 967-1043 161-231 (267)
254 TIGR02324 CP_lyasePhnL phospho 98.3 9.5E-07 2E-11 87.8 5.2 64 967-1035 147-210 (224)
255 COG4987 CydC ABC-type transpor 98.3 1.3E-06 2.8E-11 91.0 6.3 68 968-1041 473-540 (573)
256 cd03238 ABC_UvrA The excision 98.3 1.6E-06 3.4E-11 80.5 6.2 80 966-1051 84-163 (176)
257 PRK14243 phosphate transporter 98.3 8.5E-07 1.8E-11 90.1 5.0 74 967-1046 149-222 (264)
258 PRK09473 oppD oligopeptide tra 98.3 8.9E-07 1.9E-11 92.4 5.1 74 967-1044 159-232 (330)
259 PRK14238 phosphate transporter 98.3 8.5E-07 1.9E-11 90.4 4.9 72 967-1044 165-236 (271)
260 TIGR02142 modC_ABC molybdenum 98.3 8E-07 1.7E-11 94.2 4.8 73 967-1043 129-201 (354)
261 PRK14265 phosphate ABC transpo 98.3 9.4E-07 2E-11 90.2 5.1 73 967-1045 159-231 (274)
262 TIGR01978 sufC FeS assembly AT 98.3 9.4E-07 2E-11 89.2 5.1 66 969-1039 144-209 (243)
263 cd03252 ABCC_Hemolysin The ABC 98.3 8.7E-07 1.9E-11 88.9 4.8 65 967-1037 136-200 (237)
264 PRK10419 nikE nickel transport 98.3 1.1E-06 2.3E-11 89.6 5.4 72 967-1042 149-220 (268)
265 TIGR00611 recf recF protein. A 98.3 2.2E-05 4.8E-10 82.9 15.4 78 968-1049 274-358 (365)
266 PRK13546 teichoic acids export 98.3 9.5E-07 2.1E-11 89.0 5.0 73 967-1044 141-213 (264)
267 PRK13545 tagH teichoic acids e 98.2 9.1E-07 2E-11 94.8 5.0 72 967-1043 141-212 (549)
268 PRK11124 artP arginine transpo 98.2 8.7E-07 1.9E-11 89.2 4.7 67 968-1039 140-206 (242)
269 PRK14267 phosphate ABC transpo 98.2 8.5E-07 1.8E-11 90.0 4.6 72 967-1044 147-218 (253)
270 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.2 1.1E-06 2.5E-11 88.2 5.5 65 967-1037 137-201 (238)
271 cd03234 ABCG_White The White s 98.2 1.3E-06 2.8E-11 86.8 5.8 73 967-1044 141-214 (226)
272 PRK13648 cbiO cobalt transport 98.2 1.7E-06 3.8E-11 88.3 6.8 68 967-1038 140-207 (269)
273 PRK14248 phosphate ABC transpo 98.2 9.8E-07 2.1E-11 90.1 5.0 72 966-1043 161-232 (268)
274 PRK15093 antimicrobial peptide 98.2 9.1E-07 2E-11 92.7 4.9 74 967-1044 156-229 (330)
275 cd03217 ABC_FeS_Assembly ABC-t 98.2 1.1E-06 2.3E-11 85.1 4.9 71 968-1043 103-174 (200)
276 PRK13536 nodulation factor exp 98.2 9.1E-07 2E-11 92.5 4.8 75 967-1046 170-244 (340)
277 cd03228 ABCC_MRP_Like The MRP 98.2 1.1E-06 2.3E-11 82.7 4.8 63 970-1038 97-159 (171)
278 TIGR02769 nickel_nikE nickel i 98.2 9.3E-07 2E-11 90.0 4.7 73 967-1043 148-220 (265)
279 PRK03695 vitamin B12-transport 98.2 1.1E-06 2.3E-11 88.4 5.1 76 967-1043 124-202 (248)
280 PRK13409 putative ATPase RIL; 98.2 8.9E-07 1.9E-11 100.0 5.0 74 966-1043 450-523 (590)
281 PRK14261 phosphate ABC transpo 98.2 1E-06 2.3E-11 89.2 5.0 71 967-1043 147-217 (253)
282 PRK14251 phosphate ABC transpo 98.2 9.7E-07 2.1E-11 89.4 4.8 72 966-1043 144-215 (251)
283 PRK11144 modC molybdate transp 98.2 9.8E-07 2.1E-11 93.3 4.9 73 967-1043 126-198 (352)
284 cd03254 ABCC_Glucan_exporter_l 98.2 1.1E-06 2.4E-11 87.7 5.0 65 967-1037 137-201 (229)
285 TIGR03608 L_ocin_972_ABC putat 98.2 1.5E-06 3.2E-11 85.2 5.9 64 967-1035 132-195 (206)
286 cd03213 ABCG_EPDR ABCG transpo 98.2 1.6E-06 3.5E-11 83.3 5.9 62 969-1035 111-172 (194)
287 COG4175 ProV ABC-type proline/ 98.2 1.6E-06 3.5E-11 83.6 5.7 79 964-1046 159-237 (386)
288 cd03251 ABCC_MsbA MsbA is an e 98.2 1.4E-06 3.1E-11 87.2 5.8 67 967-1039 136-202 (234)
289 PRK13650 cbiO cobalt transport 98.2 1.3E-06 2.9E-11 89.4 5.5 67 967-1037 138-204 (279)
290 PRK10851 sulfate/thiosulfate t 98.2 1E-06 2.3E-11 92.6 4.9 74 967-1044 134-207 (353)
291 PRK14275 phosphate ABC transpo 98.2 1E-06 2.2E-11 90.5 4.7 71 967-1043 180-250 (286)
292 cd03248 ABCC_TAP TAP, the Tran 98.2 1.1E-06 2.3E-11 87.5 4.7 65 967-1037 148-212 (226)
293 PRK13636 cbiO cobalt transport 98.2 1.1E-06 2.4E-11 90.2 5.0 75 966-1044 138-212 (283)
294 PRK11432 fbpC ferric transport 98.2 1.1E-06 2.4E-11 92.2 4.9 74 967-1044 134-207 (351)
295 PRK14271 phosphate ABC transpo 98.2 1.1E-06 2.4E-11 89.6 4.9 71 967-1043 161-231 (276)
296 PRK13641 cbiO cobalt transport 98.2 1.2E-06 2.7E-11 90.1 5.2 72 967-1043 143-214 (287)
297 PRK14256 phosphate ABC transpo 98.2 1.2E-06 2.6E-11 88.8 5.0 72 967-1044 146-217 (252)
298 TIGR03873 F420-0_ABC_ATP propo 98.2 1.4E-06 3E-11 88.4 5.5 72 967-1043 135-206 (256)
299 PRK10895 lipopolysaccharide AB 98.2 1.2E-06 2.5E-11 88.2 4.9 70 967-1041 135-204 (241)
300 PRK13647 cbiO cobalt transport 98.2 1.2E-06 2.6E-11 89.4 5.1 73 967-1044 136-208 (274)
301 COG2884 FtsE Predicted ATPase 98.2 1.8E-06 3.9E-11 76.6 5.3 70 967-1041 135-204 (223)
302 TIGR03265 PhnT2 putative 2-ami 98.2 1.1E-06 2.4E-11 92.4 4.8 74 967-1044 132-205 (353)
303 TIGR03415 ABC_choXWV_ATP choli 98.2 1.1E-06 2.4E-11 92.5 4.8 74 967-1044 162-235 (382)
304 PRK14266 phosphate ABC transpo 98.2 1.3E-06 2.9E-11 88.4 5.2 72 967-1044 144-215 (250)
305 PRK14253 phosphate ABC transpo 98.2 1.2E-06 2.7E-11 88.5 5.0 72 967-1044 143-214 (249)
306 PRK14263 phosphate ABC transpo 98.2 1.2E-06 2.7E-11 88.6 4.9 75 966-1046 146-220 (261)
307 PRK13652 cbiO cobalt transport 98.2 1.5E-06 3.2E-11 89.0 5.6 74 967-1044 135-208 (277)
308 TIGR03258 PhnT 2-aminoethylpho 98.2 1.2E-06 2.6E-11 92.2 4.9 74 967-1044 135-209 (362)
309 PRK13633 cobalt transporter AT 98.2 2.1E-06 4.5E-11 88.2 6.5 69 967-1039 142-210 (280)
310 PRK14272 phosphate ABC transpo 98.2 1.3E-06 2.8E-11 88.6 4.9 71 967-1043 146-216 (252)
311 PRK13537 nodulation ABC transp 98.2 1.2E-06 2.6E-11 90.6 4.7 73 967-1044 136-208 (306)
312 cd03300 ABC_PotA_N PotA is an 98.2 1.3E-06 2.9E-11 87.0 4.8 65 968-1036 129-193 (232)
313 PRK15134 microcin C ABC transp 98.2 1.3E-06 2.9E-11 99.1 5.4 74 966-1043 153-226 (529)
314 PRK13541 cytochrome c biogenes 98.2 2.3E-06 5E-11 82.6 6.3 64 967-1035 121-184 (195)
315 cd03270 ABC_UvrA_I The excisio 98.2 2.2E-06 4.9E-11 84.4 6.2 71 967-1042 135-206 (226)
316 COG4559 ABC-type hemin transpo 98.2 1.8E-06 4E-11 78.0 4.9 42 25-66 9-51 (259)
317 COG1123 ATPase components of v 98.2 1.6E-06 3.5E-11 92.5 5.4 77 966-1046 151-227 (539)
318 PRK13639 cbiO cobalt transport 98.2 1.4E-06 2.9E-11 89.2 4.7 72 967-1043 135-206 (275)
319 PRK13632 cbiO cobalt transport 98.2 2.5E-06 5.4E-11 87.1 6.7 67 967-1037 140-206 (271)
320 cd03247 ABCC_cytochrome_bd The 98.2 2.2E-06 4.8E-11 81.3 5.8 65 967-1037 96-160 (178)
321 PRK14236 phosphate transporter 98.2 1.6E-06 3.4E-11 88.6 5.1 71 967-1043 166-236 (272)
322 PRK14254 phosphate ABC transpo 98.2 1.6E-06 3.4E-11 88.9 5.1 71 967-1043 178-248 (285)
323 PRK14249 phosphate ABC transpo 98.2 1.7E-06 3.7E-11 87.6 5.2 73 966-1044 144-216 (251)
324 PRK14237 phosphate transporter 98.2 1.7E-06 3.7E-11 88.1 5.2 72 967-1044 161-232 (267)
325 PRK10938 putative molybdenum t 98.2 1.8E-06 4E-11 97.1 6.0 73 966-1043 132-204 (490)
326 cd03369 ABCC_NFT1 Domain 2 of 98.2 1.9E-06 4.2E-11 84.2 5.3 65 967-1037 123-187 (207)
327 PRK14260 phosphate ABC transpo 98.2 1.7E-06 3.6E-11 87.9 5.0 74 967-1046 148-221 (259)
328 TIGR02633 xylG D-xylose ABC tr 98.2 1.6E-06 3.5E-11 97.8 5.3 72 967-1043 401-472 (500)
329 PRK13640 cbiO cobalt transport 98.2 2.2E-06 4.8E-11 87.9 5.8 67 967-1037 141-207 (282)
330 cd03244 ABCC_MRP_domain2 Domai 98.2 1.8E-06 3.9E-11 85.6 5.0 65 967-1037 137-201 (221)
331 PRK15439 autoinducer 2 ABC tra 98.2 1.9E-06 4.2E-11 97.0 5.8 72 967-1043 401-472 (510)
332 PRK11607 potG putrescine trans 98.2 1.6E-06 3.6E-11 91.7 4.9 74 967-1044 147-220 (377)
333 PRK15134 microcin C ABC transp 98.2 1.6E-06 3.5E-11 98.4 5.2 73 967-1043 423-495 (529)
334 PRK00064 recF recombination pr 98.2 3.9E-05 8.4E-10 81.4 15.1 66 966-1035 270-340 (361)
335 PRK09580 sufC cysteine desulfu 98.2 2.1E-06 4.7E-11 86.9 5.4 64 969-1037 145-208 (248)
336 TIGR03269 met_CoM_red_A2 methy 98.2 2E-06 4.3E-11 97.6 5.7 72 967-1042 166-237 (520)
337 PRK10938 putative molybdenum t 98.2 2.2E-06 4.9E-11 96.4 6.1 69 967-1039 399-467 (490)
338 PRK09700 D-allose transporter 98.2 1.9E-06 4.1E-11 97.4 5.5 73 966-1043 406-478 (510)
339 PRK10762 D-ribose transporter 98.2 1.8E-06 3.9E-11 97.3 5.2 73 966-1043 392-464 (501)
340 cd03223 ABCD_peroxisomal_ALDP 98.2 2.6E-06 5.7E-11 79.3 5.4 62 966-1035 88-149 (166)
341 TIGR00968 3a0106s01 sulfate AB 98.2 2.1E-06 4.6E-11 85.8 5.1 72 968-1043 129-200 (237)
342 KOG0976 Rho/Rac1-interacting s 98.2 0.022 4.7E-07 62.3 61.5 22 803-824 498-519 (1265)
343 cd03271 ABC_UvrA_II The excisi 98.1 3.2E-06 6.8E-11 83.8 6.1 68 967-1036 167-234 (261)
344 PRK14252 phosphate ABC transpo 98.1 2.1E-06 4.6E-11 87.5 5.0 72 967-1044 159-230 (265)
345 cd03299 ABC_ModC_like Archeal 98.1 2.3E-06 5.1E-11 85.4 5.2 65 968-1036 128-192 (235)
346 COG1119 ModF ABC-type molybden 98.1 5.1E-06 1.1E-10 77.7 6.8 74 966-1043 168-242 (257)
347 PRK13549 xylose transporter AT 98.1 2.3E-06 4.9E-11 96.6 5.4 72 967-1043 403-474 (506)
348 cd03253 ABCC_ATM1_transporter 98.1 2.3E-06 5E-11 85.9 4.9 65 967-1037 135-199 (236)
349 PRK11637 AmiB activator; Provi 98.1 0.0037 7.9E-08 68.6 30.0 15 214-228 44-58 (428)
350 CHL00131 ycf16 sulfate ABC tra 98.1 3.4E-06 7.3E-11 85.6 6.1 62 969-1035 151-212 (252)
351 COG2274 SunT ABC-type bacterio 98.1 2.6E-06 5.6E-11 96.8 5.7 70 968-1044 608-677 (709)
352 PRK14264 phosphate ABC transpo 98.1 3.2E-06 7E-11 87.7 6.0 71 967-1043 198-268 (305)
353 PRK13642 cbiO cobalt transport 98.1 3.8E-06 8.2E-11 86.1 6.4 67 967-1037 138-204 (277)
354 COG1123 ATPase components of v 98.1 3.5E-06 7.7E-11 90.0 6.2 76 967-1046 427-502 (539)
355 KOG0977 Nuclear envelope prote 98.1 0.0091 2E-07 64.2 31.1 64 634-697 91-154 (546)
356 PRK13635 cbiO cobalt transport 98.1 3.4E-06 7.4E-11 86.3 5.9 68 967-1038 138-205 (279)
357 KOG1029 Endocytic adaptor prot 98.1 0.022 4.7E-07 62.1 33.6 13 1023-1035 1073-1085(1118)
358 PRK11288 araG L-arabinose tran 98.1 2.6E-06 5.6E-11 96.0 5.5 73 966-1043 393-465 (501)
359 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 2.4E-06 5.2E-11 77.2 4.2 65 970-1042 71-135 (144)
360 PRK10261 glutathione transport 98.1 2.4E-06 5.1E-11 98.5 5.1 74 967-1044 461-534 (623)
361 PRK10982 galactose/methyl gala 98.1 3E-06 6.4E-11 95.4 5.7 73 966-1043 388-460 (491)
362 PRK15177 Vi polysaccharide exp 98.1 2.2E-06 4.7E-11 83.7 4.0 72 967-1044 102-173 (213)
363 PF05701 WEMBL: Weak chloropla 98.1 0.032 6.8E-07 62.5 64.4 11 141-151 5-15 (522)
364 TIGR03269 met_CoM_red_A2 methy 98.1 2.3E-06 4.9E-11 97.1 4.7 74 966-1043 424-497 (520)
365 COG4559 ABC-type hemin transpo 98.1 5E-06 1.1E-10 75.2 5.7 79 965-1044 131-211 (259)
366 COG4604 CeuD ABC-type enteroch 98.1 3.5E-06 7.5E-11 75.1 4.5 35 35-69 19-54 (252)
367 COG4938 Uncharacterized conser 98.1 3.3E-06 7.1E-11 79.4 4.6 47 21-68 1-47 (374)
368 PRK13644 cbiO cobalt transport 98.1 3.3E-06 7.1E-11 86.2 5.2 66 967-1037 134-199 (274)
369 PRK10982 galactose/methyl gala 98.1 2.5E-06 5.5E-11 95.9 4.7 72 967-1043 132-203 (491)
370 TIGR03522 GldA_ABC_ATP gliding 98.1 2.7E-06 5.9E-11 88.1 4.6 72 967-1044 131-202 (301)
371 TIGR02982 heterocyst_DevA ABC 98.1 4.2E-06 9E-11 82.7 5.7 71 968-1043 140-210 (220)
372 COG1340 Uncharacterized archae 98.1 0.013 2.8E-07 57.3 31.6 58 641-698 19-76 (294)
373 cd03236 ABC_RNaseL_inhibitor_d 98.1 2.8E-06 6.1E-11 85.0 4.4 72 967-1043 137-208 (255)
374 PRK14257 phosphate ABC transpo 98.1 3.4E-06 7.4E-11 87.9 5.1 72 967-1044 223-294 (329)
375 PRK09536 btuD corrinoid ABC tr 98.1 3.2E-06 6.9E-11 89.9 4.8 73 967-1044 137-209 (402)
376 PRK11174 cysteine/glutathione 98.1 4.2E-06 9.1E-11 97.0 6.0 64 969-1038 485-548 (588)
377 PF05557 MAD: Mitotic checkpoi 98.1 4.6E-05 1E-09 89.4 14.4 18 844-861 567-584 (722)
378 COG4694 Uncharacterized protei 98.1 0.00065 1.4E-08 70.6 20.4 67 967-1034 527-597 (758)
379 TIGR02633 xylG D-xylose ABC tr 98.1 3.1E-06 6.7E-11 95.6 4.5 72 967-1043 139-210 (500)
380 PRK14246 phosphate ABC transpo 98.1 3.8E-06 8.2E-11 84.8 4.7 65 967-1037 151-215 (257)
381 PRK11288 araG L-arabinose tran 98.1 3.3E-06 7.3E-11 95.1 4.7 71 967-1042 138-208 (501)
382 PF09726 Macoilin: Transmembra 98.1 0.0098 2.1E-07 67.9 31.9 33 405-437 623-655 (697)
383 PRK15439 autoinducer 2 ABC tra 98.1 3.3E-06 7.1E-11 95.2 4.6 73 966-1043 137-209 (510)
384 PRK13549 xylose transporter AT 98.0 3.3E-06 7.1E-11 95.3 4.5 72 967-1043 141-212 (506)
385 cd03250 ABCC_MRP_domain1 Domai 98.0 6.7E-06 1.5E-10 80.2 6.2 68 967-1039 125-193 (204)
386 PRK10261 glutathione transport 98.0 3.9E-06 8.5E-11 96.7 5.2 75 966-1044 165-239 (623)
387 TIGR02203 MsbA_lipidA lipid A 98.0 4.5E-06 9.8E-11 96.6 5.8 63 968-1036 468-530 (571)
388 COG4598 HisP ABC-type histidin 98.0 8.9E-06 1.9E-10 71.1 5.8 65 966-1035 149-213 (256)
389 COG1340 Uncharacterized archae 98.0 0.016 3.6E-07 56.6 33.3 31 872-902 218-248 (294)
390 cd03290 ABCC_SUR1_N The SUR do 98.0 7.4E-06 1.6E-10 80.9 6.2 67 967-1037 138-205 (218)
391 PF09726 Macoilin: Transmembra 98.0 0.0035 7.5E-08 71.4 27.5 95 637-736 420-514 (697)
392 COG1120 FepC ABC-type cobalami 98.0 9E-06 1.9E-10 78.8 6.0 34 34-67 19-53 (258)
393 PRK09700 D-allose transporter 98.0 4.4E-06 9.5E-11 94.5 4.6 72 967-1043 143-214 (510)
394 PRK10762 D-ribose transporter 98.0 4.6E-06 9.9E-11 94.0 4.6 72 967-1043 139-210 (501)
395 COG4172 ABC-type uncharacteriz 98.0 7E-06 1.5E-10 82.1 5.1 78 967-1048 155-232 (534)
396 COG4618 ArpD ABC-type protease 98.0 1.3E-05 2.9E-10 82.9 7.3 63 968-1036 471-534 (580)
397 COG4608 AppF ABC-type oligopep 98.0 9.8E-06 2.1E-10 77.9 5.9 77 966-1046 106-182 (268)
398 COG1118 CysA ABC-type sulfate/ 98.0 8E-06 1.7E-10 78.8 5.3 74 966-1043 134-207 (345)
399 KOG0994 Extracellular matrix g 98.0 0.06 1.3E-06 61.7 56.7 67 371-437 1227-1293(1758)
400 cd03289 ABCC_CFTR2 The CFTR su 98.0 7.4E-06 1.6E-10 82.9 5.4 64 968-1037 137-200 (275)
401 PRK13409 putative ATPase RIL; 98.0 5.3E-06 1.1E-10 93.9 4.8 73 966-1044 209-281 (590)
402 KOG0995 Centromere-associated 98.0 0.037 8E-07 58.9 36.1 11 512-522 129-139 (581)
403 PRK13657 cyclic beta-1,2-gluca 98.0 6.2E-06 1.3E-10 95.3 5.3 65 968-1038 470-534 (588)
404 PRK11176 lipid transporter ATP 98.0 7.4E-06 1.6E-10 94.9 5.8 65 968-1038 479-543 (582)
405 cd03291 ABCC_CFTR1 The CFTR su 98.0 1.1E-05 2.5E-10 81.8 6.2 64 967-1036 157-221 (282)
406 PF06160 EzrA: Septation ring 98.0 0.062 1.4E-06 60.9 57.1 48 847-898 448-495 (560)
407 PRK10790 putative multidrug tr 98.0 1E-05 2.2E-10 93.8 6.6 66 968-1039 475-540 (592)
408 cd03288 ABCC_SUR2 The SUR doma 98.0 8.1E-06 1.8E-10 82.7 5.0 66 967-1038 154-219 (257)
409 COG1117 PstB ABC-type phosphat 98.0 1.8E-05 3.9E-10 72.0 6.3 60 969-1034 149-208 (253)
410 TIGR03719 ABC_ABC_ChvD ATP-bin 97.9 5.1E-06 1.1E-10 94.7 3.4 70 966-1043 440-509 (552)
411 PRK11160 cysteine/glutathione 97.9 1.4E-05 3.1E-10 91.5 7.0 65 968-1038 474-538 (574)
412 TIGR01192 chvA glucan exporter 97.9 9.5E-06 2.1E-10 93.1 5.5 64 968-1037 470-533 (585)
413 COG3842 PotA ABC-type spermidi 97.9 8.6E-06 1.9E-10 83.0 4.2 75 966-1044 133-207 (352)
414 PRK10636 putative ABC transpor 97.9 6.7E-06 1.5E-10 94.8 3.8 70 966-1043 427-496 (638)
415 TIGR03375 type_I_sec_LssB type 97.9 1.1E-05 2.4E-10 95.3 5.6 64 968-1037 600-663 (694)
416 PRK10789 putative multidrug tr 97.9 1.1E-05 2.3E-10 92.6 5.4 65 968-1038 450-514 (569)
417 TIGR02204 MsbA_rel ABC transpo 97.9 1.2E-05 2.5E-10 93.2 5.7 64 968-1037 475-538 (576)
418 TIGR01194 cyc_pep_trnsptr cycl 97.9 1.3E-05 2.8E-10 91.6 5.8 65 968-1036 469-533 (555)
419 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 1.9E-05 4E-10 76.1 5.9 32 35-66 22-54 (254)
420 PLN03211 ABC transporter G-25; 97.9 1.9E-05 4.2E-10 90.7 6.9 64 967-1035 204-267 (659)
421 PF00038 Filament: Intermediat 97.9 0.052 1.1E-06 57.1 34.5 25 186-210 8-32 (312)
422 COG1579 Zn-ribbon protein, pos 97.9 0.0072 1.6E-07 57.7 22.2 6 455-460 178-183 (239)
423 TIGR02868 CydC thiol reductant 97.9 1.5E-05 3.3E-10 91.0 5.6 61 968-1034 469-529 (529)
424 PRK11819 putative ABC transpor 97.9 9.2E-06 2E-10 92.6 3.8 70 966-1043 442-511 (556)
425 TIGR01842 type_I_sec_PrtD type 97.9 1.9E-05 4.1E-10 90.3 6.2 65 968-1037 453-517 (544)
426 COG1132 MdlB ABC-type multidru 97.9 1.6E-05 3.4E-10 91.5 5.6 66 968-1039 464-529 (567)
427 PRK15064 ABC transporter ATP-b 97.8 1.1E-05 2.4E-10 91.7 4.2 70 966-1043 435-504 (530)
428 PRK15064 ABC transporter ATP-b 97.8 1.4E-05 3.1E-10 90.8 4.9 70 966-1043 152-221 (530)
429 COG3839 MalK ABC-type sugar tr 97.8 2.2E-05 4.7E-10 79.6 5.5 75 967-1045 131-205 (338)
430 TIGR00630 uvra excinuclease AB 97.8 1.5E-05 3.3E-10 93.4 5.1 73 966-1043 484-557 (924)
431 COG1135 AbcC ABC-type metal io 97.8 3.4E-05 7.5E-10 74.8 6.5 67 966-1036 138-204 (339)
432 cd03242 ABC_RecF RecF is a rec 97.8 9.4E-05 2E-09 75.3 10.2 79 967-1050 181-265 (270)
433 COG4133 CcmA ABC-type transpor 97.8 1.9E-05 4E-10 70.4 4.3 66 966-1036 127-192 (209)
434 TIGR01069 mutS2 MutS2 family p 97.8 0.0005 1.1E-08 80.1 17.1 30 36-65 314-345 (771)
435 COG4372 Uncharacterized protei 97.8 0.045 9.8E-07 54.5 31.5 16 211-226 82-97 (499)
436 PRK10522 multidrug transporter 97.8 2E-05 4.3E-10 90.0 5.4 65 968-1036 448-512 (547)
437 PRK14268 phosphate ABC transpo 97.8 3.5E-05 7.6E-10 78.3 6.5 54 10-64 3-60 (258)
438 COG1579 Zn-ribbon protein, pos 97.8 0.017 3.7E-07 55.2 23.6 63 637-699 19-81 (239)
439 TIGR01846 type_I_sec_HlyB type 97.8 2E-05 4.3E-10 93.0 5.3 64 968-1037 592-655 (694)
440 PF05701 WEMBL: Weak chloropla 97.8 0.11 2.4E-06 58.2 60.6 47 637-683 283-329 (522)
441 COG4133 CcmA ABC-type transpor 97.8 8.1E-05 1.8E-09 66.4 7.6 35 32-66 17-52 (209)
442 PRK14265 phosphate ABC transpo 97.8 4.5E-05 9.8E-10 77.9 7.0 53 14-66 15-70 (274)
443 COG0396 sufC Cysteine desulfur 97.8 4.3E-05 9.2E-10 70.7 5.9 29 34-62 21-50 (251)
444 COG4372 Uncharacterized protei 97.8 0.052 1.1E-06 54.1 33.0 38 185-222 77-114 (499)
445 TIGR03719 ABC_ABC_ChvD ATP-bin 97.8 2.2E-05 4.7E-10 89.6 5.0 70 966-1043 158-227 (552)
446 COG0411 LivG ABC-type branched 97.8 7.4E-06 1.6E-10 76.7 0.9 36 28-63 12-51 (250)
447 COG1137 YhbG ABC-type (unclass 97.8 5.3E-05 1.1E-09 68.1 6.1 61 968-1034 138-198 (243)
448 PRK14079 recF recombination pr 97.8 0.0004 8.7E-09 73.3 13.8 62 968-1034 262-328 (349)
449 PRK11819 putative ABC transpor 97.8 2.4E-05 5.3E-10 89.2 5.1 71 966-1044 160-230 (556)
450 cd03215 ABC_Carb_Monos_II This 97.8 3.7E-05 8E-10 73.1 5.4 46 19-66 4-50 (182)
451 PF05667 DUF812: Protein of un 97.7 0.12 2.6E-06 58.0 33.0 99 636-736 322-420 (594)
452 PRK11147 ABC transporter ATPas 97.7 1.7E-05 3.8E-10 91.8 3.7 69 966-1042 437-505 (635)
453 KOG0058 Peptide exporter, ABC 97.7 4.9E-05 1.1E-09 83.1 6.7 68 968-1041 603-670 (716)
454 PF09730 BicD: Microtubule-ass 97.7 0.14 3.1E-06 57.9 53.4 57 635-691 265-321 (717)
455 TIGR03796 NHPM_micro_ABC1 NHPM 97.7 3.2E-05 6.9E-10 91.8 5.6 60 969-1036 615-674 (710)
456 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 5.6E-05 1.2E-09 68.3 5.8 32 33-64 16-48 (144)
457 cd03238 ABC_UvrA The excision 97.7 3.3E-05 7.1E-10 71.8 4.3 30 33-62 11-41 (176)
458 TIGR01193 bacteriocin_ABC ABC- 97.7 3.8E-05 8.2E-10 91.0 5.9 64 968-1038 610-673 (708)
459 PLN03073 ABC transporter F fam 97.7 2.6E-05 5.7E-10 90.1 4.4 66 966-1039 624-689 (718)
460 cd03296 ABC_CysA_sulfate_impor 97.7 5.2E-05 1.1E-09 76.1 5.9 32 33-64 18-50 (239)
461 COG4604 CeuD ABC-type enteroch 97.7 2.9E-05 6.4E-10 69.4 3.4 74 966-1043 132-205 (252)
462 PRK10744 pstB phosphate transp 97.7 5.6E-05 1.2E-09 76.9 6.0 52 14-65 8-62 (260)
463 PF12718 Tropomyosin_1: Tropom 97.7 0.011 2.3E-07 52.4 19.1 51 646-696 11-61 (143)
464 KOG0057 Mitochondrial Fe/S clu 97.7 6.3E-05 1.4E-09 79.0 6.0 68 968-1041 486-553 (591)
465 PRK13538 cytochrome c biogenes 97.7 7E-05 1.5E-09 72.9 6.1 46 20-65 2-50 (204)
466 PRK11147 ABC transporter ATPas 97.7 3.8E-05 8.2E-10 89.0 4.9 69 966-1042 153-221 (635)
467 COG0488 Uup ATPase components 97.7 3.7E-05 8E-10 84.4 4.5 62 966-1035 436-497 (530)
468 PRK13539 cytochrome c biogenes 97.7 7.2E-05 1.6E-09 73.0 6.0 46 20-65 3-51 (207)
469 PRK14247 phosphate ABC transpo 97.7 6.4E-05 1.4E-09 76.1 5.8 32 33-64 19-51 (250)
470 PF05557 MAD: Mitotic checkpoi 97.7 0.00013 2.9E-09 85.6 9.2 38 883-920 607-644 (722)
471 PRK14242 phosphate transporter 97.7 7.1E-05 1.5E-09 76.0 6.1 49 18-66 5-56 (253)
472 TIGR01257 rim_protein retinal- 97.6 3.9E-05 8.4E-10 97.0 4.8 73 966-1044 1058-1130(2272)
473 COG4172 ABC-type uncharacteriz 97.6 9E-05 2E-09 74.4 6.3 70 966-1040 423-492 (534)
474 TIGR03797 NHPM_micro_ABC2 NHPM 97.6 4.3E-05 9.4E-10 90.2 5.0 63 968-1038 587-649 (686)
475 PRK14261 phosphate ABC transpo 97.6 8E-05 1.7E-09 75.5 6.2 47 19-66 6-56 (253)
476 cd03264 ABC_drug_resistance_li 97.6 5.3E-05 1.2E-09 74.4 4.8 32 33-64 16-47 (211)
477 COG0396 sufC Cysteine desulfur 97.6 8.5E-05 1.8E-09 68.8 5.6 62 969-1035 144-205 (251)
478 PF00005 ABC_tran: ABC transpo 97.6 4E-05 8.6E-10 69.3 3.5 31 35-65 3-34 (137)
479 TIGR00955 3a01204 The Eye Pigm 97.6 7.9E-05 1.7E-09 85.9 6.8 63 968-1035 165-227 (617)
480 TIGR02315 ABC_phnC phosphonate 97.6 7.5E-05 1.6E-09 75.4 5.8 32 33-64 18-50 (243)
481 PRK13540 cytochrome c biogenes 97.6 8.9E-05 1.9E-09 71.9 6.1 45 20-64 2-49 (200)
482 PRK10636 putative ABC transpor 97.6 4E-05 8.6E-10 88.5 4.3 63 966-1036 146-208 (638)
483 PRK00349 uvrA excinuclease ABC 97.6 6E-05 1.3E-09 88.7 5.8 74 966-1044 486-560 (943)
484 cd00267 ABC_ATPase ABC (ATP-bi 97.6 8.1E-05 1.8E-09 68.9 5.6 34 33-66 15-49 (157)
485 PRK00349 uvrA excinuclease ABC 97.6 6.8E-05 1.5E-09 88.3 6.1 69 967-1037 828-896 (943)
486 cd03265 ABC_DrrA DrrA is the A 97.6 8.7E-05 1.9E-09 73.4 6.1 32 33-64 16-48 (220)
487 PRK11248 tauB taurine transpor 97.6 8.7E-05 1.9E-09 74.9 6.2 32 33-64 17-49 (255)
488 TIGR02857 CydD thiol reductant 97.6 3.9E-05 8.5E-10 87.6 4.1 63 968-1036 457-519 (529)
489 KOG0946 ER-Golgi vesicle-tethe 97.6 0.18 3.9E-06 56.0 31.4 13 234-246 703-715 (970)
490 PRK11247 ssuB aliphatic sulfon 97.6 0.0001 2.2E-09 74.2 6.6 48 17-64 10-60 (257)
491 COG1126 GlnQ ABC-type polar am 97.6 6.2E-05 1.3E-09 69.0 4.4 31 35-65 20-51 (240)
492 cd03248 ABCC_TAP TAP, the Tran 97.6 9.6E-05 2.1E-09 73.6 6.3 50 16-65 8-63 (226)
493 TIGR02673 FtsE cell division A 97.6 9.1E-05 2E-09 73.0 6.0 32 33-64 18-50 (214)
494 PRK14262 phosphate ABC transpo 97.6 8.7E-05 1.9E-09 75.2 6.0 33 33-65 19-52 (250)
495 cd03262 ABC_HisP_GlnQ_permease 97.6 9.4E-05 2E-09 72.9 6.0 31 33-63 16-47 (213)
496 PRK14237 phosphate transporter 97.6 0.0001 2.2E-09 75.2 6.4 49 17-65 18-69 (267)
497 PRK10584 putative ABC transpor 97.6 0.0001 2.2E-09 73.5 6.2 33 33-65 26-59 (228)
498 COG3638 ABC-type phosphate/pho 97.6 5.8E-05 1.3E-09 70.2 4.1 77 963-1043 141-217 (258)
499 TIGR00630 uvra excinuclease AB 97.6 8E-05 1.7E-09 87.5 6.1 69 967-1037 826-894 (924)
500 PRK09544 znuC high-affinity zi 97.6 8.8E-05 1.9E-09 74.5 5.6 32 33-64 20-52 (251)
No 1
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-100 Score=825.38 Aligned_cols=1032 Identities=37% Similarity=0.593 Sum_probs=857.1
Q ss_pred CCCCCCCCceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEE
Q 001556 12 YGPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAM 91 (1054)
Q Consensus 12 ~~~~~~~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~ 91 (1054)
.......+|+|.+|+|.|||||....|+|+|.+|+|+|+||||||.||.||+.||||+++.+.||+++.+||+.|+++|.
T Consensus 32 ~~~~~~~sG~I~sI~L~NFMCHsnL~IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A~ 111 (1074)
T KOG0250|consen 32 FTLQRAESGKIESIHLTNFMCHSNLLIEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSAK 111 (1074)
T ss_pred hhhhhhhcceEEEEEEeeecccccceeccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCcceE
Confidence 33355666999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCcccccccccCCceEEEEEeeCCCCeEEEE-cCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhh
Q 001556 92 VEVELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLK-DHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (1054)
Q Consensus 92 v~l~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 170 (1054)
|.|++.|.|.++|.|++||+.++|.|+|...+++|++. +.+|++|+.+..++..++.+|+++++||++|+.|+..+.||
T Consensus 112 IsItL~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL 191 (1074)
T KOG0250|consen 112 ISITLSNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFL 191 (1074)
T ss_pred EEEEEecCCcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHH
Confidence 99999999999999999999999999999555555554 78999999999999999999999999999999999999999
Q ss_pred cCCChhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001556 171 HSGNDKDKF----KATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKL 246 (1054)
Q Consensus 171 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 246 (1054)
..+.+.++| ++++++++...+..+.+.+......+...+..+..++.++.+.+..+..++....+...+..++.++
T Consensus 192 ~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~ 271 (1074)
T KOG0250|consen 192 ANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKM 271 (1074)
T ss_pred hcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001556 247 AWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATK 326 (1054)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (1054)
.|..+.....++..+...+...+.....+...++.....+..+...+.+.++.+..+.........++..+.+.+..+..
T Consensus 272 ~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 272 AWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888899998888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 001556 327 EKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKL 406 (1054)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 406 (1054)
+..+++..+....+.+...+..+..+++.+.++..+.......++.+.+..++.|+.+++.++..+..+..+...+...+
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988876677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhhcCCccCCCccccccceeccCCCc
Q 001556 407 SKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDT 486 (1054)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1054)
...+.+....+..+..+...++.....+..+.....+.+..|+ +.++.++..+......|..+|.||++.++.+.+ ++
T Consensus 432 ~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~-~K 509 (1074)
T KOG0250|consen 432 KEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKE-PK 509 (1074)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhhHHHHHHHHHHHhcCCCCCCCCccceeEecC-cH
Confidence 9999999999999999999999999999999998888888898 999999999999888888899999999999999 89
Q ss_pred hHHHHHHHHhcccceeeecChhhHHHHHHHHHHhccCCcceEEEecCCCCCCCCCCCCCCCCCccchhceecCchhHHHH
Q 001556 487 WAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINV 566 (1054)
Q Consensus 487 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 566 (1054)
|..+++.++++.+++|+|.+..+...+..++++..++...+.++.++.+....+....+...+|.+++.|..+++.+.++
T Consensus 510 Wa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~ 589 (1074)
T KOG0250|consen 510 WALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNV 589 (1074)
T ss_pred HHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCCCCCceeeeeecCChHHHHH
Confidence 99999999999999999999999999999999887765333333333344444444444455899999999999999999
Q ss_pred hhccCCccEEEEecChHHHHHHhhhc-CCCCcceeEcccCCeeeecCCc---cccccccccccCccccCCHHHHHHHHHH
Q 001556 567 LVDMGSAERQVLVRDYDVGKAVAFEQ-RISNLKEVYTLDGHKMFSRGSV---QTILPLNRRLRTGRLCGSYDEKIKDLER 642 (1054)
Q Consensus 567 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 642 (1054)
+++...++..+++.+-..+..+.... .+.++..+++++|......|.. +++.+.... .++........++..++.
T Consensus 590 LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r-~~~~~~~s~d~~ie~le~ 668 (1074)
T KOG0250|consen 590 LIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRAR-RPGVDEFSFDDEIEDLER 668 (1074)
T ss_pred hhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCC-CccccchhHhHHHHHHHH
Confidence 99999999999999955555555444 4667778999998876665541 111111111 223344567888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcchHHHHHHHHHH
Q 001556 643 AALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNI 722 (1054)
Q Consensus 643 ~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l 722 (1054)
.+..++.++..+......++..+..++..+..+...+...+..+..+..++..++...+. ...--..++.+..++...
T Consensus 669 e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~--~~~~~~~~~~l~~ei~~~ 746 (1074)
T KOG0250|consen 669 EASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEE--KQVDISKLEDLAREIKKK 746 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhcchhhhHHHHHHHHHH
Confidence 999999988888888888888888888888888888888888888888888888773121 000234455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001556 723 QEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVG 802 (1054)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 802 (1054)
..++......+..+...+..+......+..........+......++.+..++......+.........++..+ .....
T Consensus 747 ~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~-K~~l~ 825 (1074)
T KOG0250|consen 747 EKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKL-KSRLE 825 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHH-HHhhH
Confidence 66777777777777777777777777777777777777777777777777777666666655554554455444 32334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChh--hhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 001556 803 AIKEAESQYRELELLRQDSCRKASVICPES--EIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEK 880 (1054)
Q Consensus 803 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 880 (1054)
.+...+..+..+...+......+...|+.. .+..+ .....++...+..+...+..+... .....++...+...
T Consensus 826 ~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~----~~~~~eik~ei~rlk~~i~~~ee~-~~~~~e~~~~~~~~ 900 (1074)
T KOG0250|consen 826 ELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEAL----GKTVAEIKREIKRLKRQIQMCEES-LGELEELHRGLHEA 900 (1074)
T ss_pred HHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcc----cchHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 445555555555544444444444455543 22111 234567777777777777654443 33333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCceeEEeecccceEEEEEecCCCCC
Q 001556 881 EHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDAS 960 (1054)
Q Consensus 881 ~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g~~~~~~~~~~~~i~v~~~~~~~ 960 (1054)
...+.....-...+.+.+..+...+..+|..|......+.-.....|+.+++..|+.|.+.+++.+..+++.|..|..+.
T Consensus 901 ~~~~~k~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~sg~l~~~~e~ktl~i~v~~~~~~~ 980 (1074)
T KOG0250|consen 901 RKELKKEDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFSGKLEFDHEEKTLSISVKLPTSGN 980 (1074)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeecccccccchhhccCCCCc
Confidence 33333333333336888888889999999999999999999999999999999999999999999999999995554444
Q ss_pred CCcccCCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCC
Q 001556 961 SSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQ 1040 (1054)
Q Consensus 961 ~~~~~~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~ 1040 (1054)
.+.+.++..|||||||++++||+||||..+.|||++|||+||+||..||+.++++|++++...++|||||||+++.++..
T Consensus 981 ~~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~ 1060 (1074)
T KOG0250|consen 981 EKAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNS 1060 (1074)
T ss_pred ccccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhcc
Confidence 46688999999999999999999999999999999999999999999999999999999997779999999999999999
Q ss_pred CCCceEEecCCCCC
Q 001556 1041 GERIKKQQMAAPRP 1054 (1054)
Q Consensus 1041 ~~~~~v~~~~~~~~ 1054 (1054)
++++.|++|.+|+.
T Consensus 1061 ~~~i~v~rm~~pe~ 1074 (1074)
T KOG0250|consen 1061 DDGIVVFRMSDPER 1074 (1074)
T ss_pred ccceEEeeccCCCC
Confidence 99999999999984
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.7e-81 Score=757.22 Aligned_cols=990 Identities=21% Similarity=0.319 Sum_probs=545.6
Q ss_pred ceEeEEEEEecccc-cceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCce------EEE
Q 001556 20 GTITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSY------AMV 92 (1054)
Q Consensus 20 m~i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~------~~v 92 (1054)
|+|++|++.||+|| ++++++|+||||+|+||||||||+|+|||+||||..+.+.+|++++.|+|+.|... |.|
T Consensus 1 m~lk~i~l~gFKSF~~~~~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V 80 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEV 80 (1163)
T ss_pred CeeeEEEEECcccCCCCeeeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceEE
Confidence 89999999999999 55788999999999999999999999999999999999999999999999988766 999
Q ss_pred EEEEEecCcccccccccCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhc
Q 001556 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1054)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1054)
+|+|+|.+ .+.|..++ +++|+|++. +|.|.|+| ||..+. ..++.+++..+|++..++ ++++||++..|+.
T Consensus 81 ~l~fdN~d--~~~~~~~~-ei~v~Rri~r~g~S~Y~I---Ng~~~~--~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~ 151 (1163)
T COG1196 81 ELTFDNSD--NTLPLEYE-EISVTRRIYRDGESEYYI---NGEKVR--LKDIQDLLADSGIGKESY-SIVSQGKVEEIIN 151 (1163)
T ss_pred EEEEeCCC--CcCCcccc-eEEEEEEEEEcCCcEEEE---CCcEee--HHHHHHHHHhcCCCCCCC-ceeecccHHHHHc
Confidence 99999985 45555555 789999999 78889999 687774 479999999999999999 9999999999999
Q ss_pred CCChhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 172 SGNDKDKFKATLLQQVNDL------LQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKK 245 (1054)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 245 (1054)
+.|.. +..+++++.+. .......+......+..+...+..++.+++.++.+.+...++..+..++..++..
T Consensus 152 ~kp~e---rr~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~ 228 (1163)
T COG1196 152 AKPEE---RRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELA 228 (1163)
T ss_pred CCHHH---HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98876 44466666553 3333344444555555555566666666666666666667778888888888887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001556 246 LAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLAT 325 (1054)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 325 (1054)
+.+.++.....++..+...+..++..+..+...+......+..+...+.++...+..+......+...+..+..++..+.
T Consensus 229 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~ 308 (1163)
T COG1196 229 LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777666666666666665555555555555554444443333222222222222222222
Q ss_pred HHHHHHHHHHH--------------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------HhhHHH----
Q 001556 326 KEKLELEGELV--------------RNTSYMQKM-------VNRVKGLEQQVHDIQEQHV----------RNTQAE---- 370 (1054)
Q Consensus 326 ~~~~~~~~~~~--------------~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~----------~~~~~~---- 370 (1054)
..+........ .....+... ......+.......+.... ......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1163)
T COG1196 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAEL 388 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 22222211111 111111110 1111111111111000000 001111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHH
Q 001556 371 ---ESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEI-------RRISDEIEDYDKKC-------REIRSE 433 (1054)
Q Consensus 371 ---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~-------~~l~~~ 433 (1054)
...+..++..++.++..++..+..+...+..+..++..+...+ ..+..++..+...+ ..+...
T Consensus 389 ~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 468 (1163)
T COG1196 389 EAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222222222222222222222222111111111 11111111111111 111111
Q ss_pred --------------HHHHHHhcCCccccCCcccHHHHHHHHHhhcCCccCCCccccccceeccCCCchHHHHHHHHhccc
Q 001556 434 --------------IRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLL 499 (1054)
Q Consensus 434 --------------~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 499 (1054)
+..+..+........ .........+...... ..+++|++++++.+. +.|..|++.++|+.+
T Consensus 469 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~-~~Gv~G~v~~li~v~--~~y~~Aie~alG~~l 543 (1163)
T COG1196 469 LAELQEELQRLEKELSSLEARLDRLEAEQ--RASQGVRAVLEALESG-LPGVYGPVAELIKVK--EKYETALEAALGNRL 543 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHhcc-CCCccchHHHhcCcC--hHHHHHHHHHccccc
Confidence 111111100000000 0000001111111111 356789999988875 599999999999999
Q ss_pred ceeeecChhhHHHHHHHHHHhccCCcceEEEecCCCCCCCCCCCCCCCCCccchhceecCc---hhHHHHhhccCCccEE
Q 001556 500 NAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDN---PTVINVLVDMGSAERQ 576 (1054)
Q Consensus 500 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~l~~~~~~~~~ 576 (1054)
.+++|++...+..+..+++....++.+|+|++...+....+... .++.++.+.+.+..++ +.+..++. .+
T Consensus 544 ~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~-~~g~~~~a~dli~~d~~~~~~~~~~l~------~t 616 (1163)
T COG1196 544 QAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA-APGFLGLASDLIDFDPKYEPAVRFVLG------DT 616 (1163)
T ss_pred CCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc-ccchhHHHHHHhcCCHHHHHHHHHHhC------Ce
Confidence 99999999999999999999999999999988766544333222 2233445556667665 33444443 47
Q ss_pred EEecChHHHHHHhhhcCCCCcceeEcccCCeeeecCCccccccccccc-cCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 577 VLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRL-RTGRLCGSYDEKIKDLERAALHVQEEAQQCR 655 (1054)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~l~ 655 (1054)
++|++.+.+..+......++ +++|++|.++.++|..++|....... .....+..+..++..+...+......+..+.
T Consensus 617 ~Iv~~l~~A~~l~~~~~~~~--riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 694 (1163)
T COG1196 617 LVVDDLEQARRLARKLRIKY--RIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLK 694 (1163)
T ss_pred EEecCHHHHHHHHHhcCCCc--eEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998887654333 89999999998888776662221110 0000000122333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhcCCCCCCcchHHHHHHHHHHHHH---
Q 001556 656 KRKRDSEERLQDLQQHQQNVKRRCFSAE-------RNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEE--- 725 (1054)
Q Consensus 656 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--- 725 (1054)
..+..+...+..+...+..+...+..+. .....+...+..+...+.. +...+..++.++..+...
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ 769 (1163)
T COG1196 695 NELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEE-----LEEELEELQERLEELEEELES 769 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222222222222222211111 1111111111111111111 111111111111111111
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHH----
Q 001556 726 -------------------------IQEKEIILEKLQFSMNEAEAKV-------EDLKLSFQSLCESAKEEVDTFE---- 769 (1054)
Q Consensus 726 -------------------------~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~l~---- 769 (1054)
+..+...+..+...+..+..++ ..+..++..+..++..+...+.
T Consensus 770 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~ 849 (1163)
T COG1196 770 LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE 849 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111111111 1111111111111111111111
Q ss_pred ---HHHHHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCh--
Q 001556 770 ---AAEKELMEIEKNLQTSESEKAHYEDVMR------TRVVGAIKEAESQYRELELLRQDSCRKASV-------ICPE-- 831 (1054)
Q Consensus 770 ---~l~~~l~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~-- 831 (1054)
.+...+..+...+..+...+..+...+. ..+...+..+...+.++...+......+.. ....
T Consensus 850 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 929 (1163)
T COG1196 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111111111111110 222222222222222222222211111111 0000
Q ss_pred hhhhhcCCCCCCCHH-HHHHHHHHHHHHHHH---HhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 832 SEIEALGGWDGSTPE-QLSAQVNRLNQRLKH---ESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDS 907 (1054)
Q Consensus 832 ~~~~~~~~~~~~~~~-~l~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 907 (1054)
.....+......... .+...+..+..++.. +|..+..+|+++..+|+.+..++.++......+...|..++..
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~--- 1006 (1163)
T COG1196 930 ELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE--- 1006 (1163)
T ss_pred HHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 000001111112222 567777777777554 4444555666666666666666666666666666666554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCceeEEeecccc----eEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHH
Q 001556 908 RWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEK----TLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFA 983 (1054)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~ 983 (1054)
+...|...|..+...|+..|..+|+ |+.|++.++.+++ ++.|.|.| ||+.+.++..||||||+++||||+
T Consensus 1007 ~~~~f~~~f~~In~~F~~if~~L~~--GG~a~L~l~~~dd~l~~Giei~a~p----pgK~~~~l~~LSGGEKsLtAlAll 1080 (1163)
T COG1196 1007 KRERFKETFDKINENFSEIFKELFG--GGTAELELTEPDDPLTAGIEISARP----PGKKLQSLSLLSGGEKSLTALALL 1080 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CCeeEEEeCCCCchhhcCcEEEEEC----CCCCccchhhcCCcHHHHHHHHHH
Confidence 3346777888888888888888887 7889999977665 55666665 888888999999999999999999
Q ss_pred HHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEEecCC
Q 001556 984 LALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQMAA 1051 (1054)
Q Consensus 984 ~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~~~ 1051 (1054)
||||.+.|+|||||||||++||..|+..++.+|.+++ .++|||||||++.+|..++..++|+...+
T Consensus 1081 FAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~~~m~~ad~l~GVtm~~~ 1146 (1163)
T COG1196 1081 FAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRKGTMEAADRLVGVTMQEK 1146 (1163)
T ss_pred HHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcChHHHHHHHHHeeeEeecC
Confidence 9999999999999999999999999999999999987 99999999999998888888889977664
No 3
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=6.9e-74 Score=608.29 Aligned_cols=972 Identities=19% Similarity=0.245 Sum_probs=583.8
Q ss_pred CCCCCceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEE
Q 001556 15 QRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEV 94 (1054)
Q Consensus 15 ~~~~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l 94 (1054)
..++.|.|.+|+|+||..|...++.|+|.+|+|+||||||||||++|||+||||+|...||+..+.+||+.|++.|+|+|
T Consensus 15 ~sf~~GsIvrI~l~NF~Ty~~~e~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~g~IEI 94 (1072)
T KOG0979|consen 15 SSFPDGSIVRIELHNFLTYDHTEFLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDEGYIEI 94 (1072)
T ss_pred ccCCCCceEEEEEeeeeeeeeeeecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCccceEEE
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccccccccCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhcCC
Q 001556 95 ELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSG 173 (1054)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~ 173 (1054)
++.+.+ ..++|+|.|. .+.|.|.| ||..+ +...+.+++..|+++++|+|.|+||+++..|...+
T Consensus 95 ~l~~~~----------e~~~ItR~I~~~k~S~y~i---N~~a~--t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~ 159 (1072)
T KOG0979|consen 95 ELKDKD----------ETLTITRLISRDKESKYFI---NDSAT--TKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLS 159 (1072)
T ss_pred EEecCC----------CceEEEEEEeecCCcceee---ccchh--hhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCC
Confidence 999873 5689999999 77799999 56555 44799999999999999999999999999998876
Q ss_pred ChhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001556 174 NDKDKF------KATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLA 247 (1054)
Q Consensus 174 ~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 247 (1054)
+-.-.. ....+-.....+..++...+.+...+......+..++++++.+...++.+.+.......++-+.....
T Consensus 160 pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~ 239 (1072)
T KOG0979|consen 160 PIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKK 239 (1072)
T ss_pred hHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 532111 22212333455777778888888888888889999999999999999999988888999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001556 248 WSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKE 327 (1054)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (1054)
|..+.....++.........+..++..+.+.+..+......++.+..+...++......+.+....+...-..+......
T Consensus 240 ~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~ 319 (1072)
T KOG0979|consen 240 WVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDE 319 (1072)
T ss_pred ccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888887777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 001556 328 KLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRN-----TQAEESEIEAKLKELQCEIDAANITLSRMKEEDSAL 402 (1054)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 402 (1054)
+......+..+.......+..+....+.+.+++..+... ...+..++..++...... .+....+.++
T Consensus 320 v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~------~~~~~~~~id-- 391 (1072)
T KOG0979|consen 320 VEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSS------KLRDSRQEID-- 391 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhh------hhhhhhhhhh--
Confidence 777777777777666666666766666666666554321 111122211111111100 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhhcCCccCCCccccccceecc
Q 001556 403 SEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLV 482 (1054)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (1054)
..........++.....++........ +..-..+..+. ++......|+.+....|..++++|+...+.++
T Consensus 392 ------~~~~~~~~~~~l~~~kr~~~~~~~~~~---~k~~~~l~~~~-~d~~dAy~wlrenr~~FK~~vyeP~~m~l~~k 461 (1072)
T KOG0979|consen 392 ------AEQLKSQKLRDLENKKRKLKQNSDLNR---QKRYRVLRQGS-SDAYDAYQWLRENRSEFKDEVYEPPIMTLNVK 461 (1072)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHhccCc-hHHHHHHHHHHHCHHHhcccccCCceEEEecC
Confidence 000000111111111111111111100 00000111222 66777888999999889889999988888888
Q ss_pred CCCchHHHHHHHHhc-ccceeeecChhhHHHHHHHHHHhccCCcce--EEEecCCCC--CCCCCCCCCCCCCccchhcee
Q 001556 483 NGDTWAPAVEQAIGR-LLNAFIVTDHKDALLLRGCAREANYNHLQI--IIYDFSRPR--LSLPHHMLPHTKHPTTLSVLQ 557 (1054)
Q Consensus 483 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 557 (1054)
+ +.++.+++..++. .+..|++.+.++...+...+.........+ ++.+...+. +..+...+...++..++..+.
T Consensus 462 ~-~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyls~f~ 540 (1072)
T KOG0979|consen 462 N-AEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWRVNASEVIPREKKYADKIPAQSREELKRLGFEGYLSNFI 540 (1072)
T ss_pred C-hHHHHHHHcccCccccceeeeechHHHHHHHHHhhhcceeeeceeccccccccccCCCccCHHHHHhcChHHHhhhhh
Confidence 8 8999999998886 678899999998887777766532111111 111111111 111112223356666666666
Q ss_pred cCchhHHHHhhccCCccEEEEecC-hHHHHH-HhhhcCCCCcceeEc---ccCCeee----ecCC--ccccc---ccccc
Q 001556 558 SDNPTVINVLVDMGSAERQVLVRD-YDVGKA-VAFEQRISNLKEVYT---LDGHKMF----SRGS--VQTIL---PLNRR 623 (1054)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~----~~~~--~~~~~---~~~~~ 623 (1054)
..+.++..+||....+....+... .+.+.. .......+++..++. ..|.... .-|+ ...+. .....
T Consensus 541 ~~p~~vm~~Lc~~~~ih~IPvs~~~~~e~~~~~~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~~~~~~lk~~~f 620 (1072)
T KOG0979|consen 541 EAPEPVMSYLCNVSKIHRIPVSKREVEEAIVEVLQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVITRNDPLKSRNF 620 (1072)
T ss_pred cCcHHHHHHHHHhccccccccCcccccHHHHHHHhccccCCCchhHHHHhhcCchhhhhhhccccceeeecCCcchhhhh
Confidence 667788889988777665543322 111111 111000000000000 0000000 0000 00000 00000
Q ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001556 624 LRTGRLCGSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAAD 703 (1054)
Q Consensus 624 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 703 (1054)
+. ....+.....-.+..+..+..+++.....+..++.+.......++.....+..+.+....+...+..++.....
T Consensus 621 ~~---~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~- 696 (1072)
T KOG0979|consen 621 FS---VSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKER- 696 (1072)
T ss_pred hc---cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-
Confidence 00 00112222223333333344444444444444444444444444444444444444433333333333222111
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001556 704 AGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKL----SFQSLCESAKEEVDTFEAAEKELMEIE 779 (1054)
Q Consensus 704 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~l~~~l~~~~ 779 (1054)
++..+..+..+-.++.......-.......... +...+..... .+........-+....... +++
T Consensus 697 ----ie~~~~~l~~qkee~~~~~~~~I~~~~~~~~~~--~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~i-----ea~ 765 (1072)
T KOG0979|consen 697 ----IENLVVDLDRQEEEYAASEAKKILDTEDMRIQS--IRWHLELTDKHKEIGIKEKNESSYMARSNKNNI-----EAE 765 (1072)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----HHH
Confidence 111111111111111111111111111100000 0000000000 0000000000000000000 001
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------hhCChh------hhhhcCCCCCCC
Q 001556 780 KNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRK--AS-------VICPES------EIEALGGWDGST 844 (1054)
Q Consensus 780 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-------~~~~~~------~~~~~~~~~~~~ 844 (1054)
..+ ...+..+ .-+++....+...++.+.........+ +. ...... -...+... +.+
T Consensus 766 ~~i-------~~~e~~i-~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~-p~t 836 (1072)
T KOG0979|consen 766 RKI-------EKLEDNI-SFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEE-PTT 836 (1072)
T ss_pred HHH-------HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhC-CCc
Confidence 111 1111111 111111111111121221111111100 00 000000 00000001 455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 845 PEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLT 924 (1054)
Q Consensus 845 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 924 (1054)
+.++...+..-..+... +....+.+..+|+..+.++..+...+......++.+...+......|...++.+...++
T Consensus 837 ~~eld~~I~~e~t~~~~----~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In 912 (1072)
T KOG0979|consen 837 MDELDQAITDELTRALK----FENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQIN 912 (1072)
T ss_pred HHHHHHHHHHHHHHHHH----HhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 66666666554442222 22233346666777777777777777777777777777777777788888888889999
Q ss_pred HHHHHhhhhcCCceeEEe-----ecccceEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHHHHhhhhcCCCceeech
Q 001556 925 WQFNGHLGKKGISGKINI-----NYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDE 999 (1054)
Q Consensus 925 ~~f~~l~~~~~~~g~~~~-----~~~~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE 999 (1054)
..|..+|..+|+.|.|.+ |+..|+|.|.|+|+...+...+ +.+.+||||||++++.|++||+++++|||+|+||
T Consensus 913 ~~Fs~~F~~mg~aGeV~L~~~~~DydkwgI~ImVkFR~s~~L~~L-~sh~QSGGERSVSTiLYLlALQ~l~~~PFRvVDE 991 (1072)
T KOG0979|consen 913 ERFSQLFSSMGCAGEVSLEVNPLDYDKWGIMIMVKFRDSEGLKVL-DSHRQSGGERSVSTILYLLALQELTPAPFRVVDE 991 (1072)
T ss_pred HHHHHHHhhcccCceEEeccCcccHhHhceEEEEEEccCcccccc-cccccCCcchHHHHHHHHHHHhhccCCCeeehhh
Confidence 999999999999999988 4667999999999988666665 6778999999999999999999999999999999
Q ss_pred hhhhcchhhHHHHHHHHHHHHh-cCCcEEEEeccCCCCCCCCCCCceEEec
Q 001556 1000 FDVFMDAISRKISLDTLVDFAL-AQGSQWIFITPHDVGLVKQGERIKKQQM 1049 (1054)
Q Consensus 1000 ~~~~lD~~~~~~~~~~l~~~~~-~~~~Q~i~iT~~~~~~~~~~~~~~v~~~ 1049 (1054)
|++||||.|.+.|++.|+..++ ...+|||+|||+-.+...++..|+|+-+
T Consensus 992 INQGMDp~NER~Vh~~mV~~ac~entsQyFliTPKLLpgL~Ysenm~Il~v 1042 (1072)
T KOG0979|consen 992 INQGMDPRNERKVHDIMVNMACKENTSQYFLITPKLLPGLDYSENMKILCV 1042 (1072)
T ss_pred hhcCCCchhHHHHHHHHHHHhhcCCCcceEEecchhcCCCChhhcceEEEE
Confidence 9999999999999999999998 6669999999999999999999988753
No 4
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-69 Score=583.53 Aligned_cols=1004 Identities=16% Similarity=0.243 Sum_probs=502.9
Q ss_pred CCCCCceEeEEEEEecccc-cceEE-EeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCC-----
Q 001556 15 QRSGAGTITRVRLENFMCH-SSLQI-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC----- 87 (1054)
Q Consensus 15 ~~~~~m~i~~i~l~nf~~~-~~~~i-~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~----- 87 (1054)
...|+++|..|.+.||+|| +.+.| +|+|.||+|+||||||||+++|||.|+||.++.+ .|.++++++|+++.
T Consensus 79 ~~~~RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~k-iR~~klS~LIh~S~~~~~l 157 (1293)
T KOG0996|consen 79 AGGPRLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASK-IRSKKLSALIHKSDGHPNL 157 (1293)
T ss_pred CCCCeeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhH-HhHHHHHHHHhccCCCCCC
Confidence 5588899999999999999 55566 9999999999999999999999999999999987 69999999998543
Q ss_pred ceEEEEEEEEec--CcccccccccCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechh
Q 001556 88 SYAMVEVELKNR--GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQD 164 (1054)
Q Consensus 88 ~~~~v~l~~~~~--~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 164 (1054)
.+|.|+|+|.-- ..+.+.-.+.|..++|+|+.. ++++.|+| ||+..+ ..+|..++..-|++.+++-|++-||
T Consensus 158 ~SCsV~vhFq~iiD~~~~~~E~vp~s~~~ItRtA~~~NsSkY~I---ngk~as--~~~V~~lLk~~gIDleHNRFLILQG 232 (1293)
T KOG0996|consen 158 QSCSVEVHFQKIIDKPGGTYEVVPDSEFTITRTAFRDNSSKYYI---NGKEAS--FKDVTKLLKSHGIDLEHNRFLILQG 232 (1293)
T ss_pred cceeEEEeeeeeeccCCCceeecCCCeeEEEehhhhCCCceEeE---CCcccc--HHHHHHHHHhcCCCCccceeeeehh
Confidence 259999999852 112111223467799999998 88899999 687774 4799999999999999999999999
Q ss_pred hhhhhhcCCChhh--------hH---------HHHHHHHHHHHHHHH-------HHHHHHH-------------------
Q 001556 165 KSREFLHSGNDKD--------KF---------KATLLQQVNDLLQSI-------YNHLNKG------------------- 201 (1054)
Q Consensus 165 ~~~~~l~~~~~~~--------~~---------~~~~~~~~~~~l~~~-------~~~~~~~------------------- 201 (1054)
.+.++..+.|... -| +...++.+...+..+ ...++-.
T Consensus 233 EVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~ 312 (1293)
T KOG0996|consen 233 EVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLK 312 (1293)
T ss_pred hHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999988766211 01 000111111111100 0000000
Q ss_pred -------------HHHHHHHHHhhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhh------hhH
Q 001556 202 -------------DALVLELEATIKPTEKELSELQRKIRNM------------EHVEEITQDLQRLKKKLA------WSW 250 (1054)
Q Consensus 202 -------------~~~~~~~~~~~~~l~~~~~~l~~~~~~~------------~~~~~~~~~~~~l~~~~~------~~~ 250 (1054)
+..+.+...++......+..+...+... +........+........ ..+
T Consensus 313 kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~ 392 (1293)
T KOG0996|consen 313 KENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKK 392 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111111111111111111111111 000111111111111100 001
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------
Q 001556 251 VYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSIS-------- 322 (1054)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 322 (1054)
+..+..+-...++.++.+...+..+..+++.......+++...+.....+..+..++.++.......+..+.
T Consensus 393 ~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 393 FQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112222222222222222222222222222222222222222222222222222222222222211111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 001556 323 ---LATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEED 399 (1054)
Q Consensus 323 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 399 (1054)
.+..++..++..+..+..++.....++.-.+.++..+..... .......++...+......+.+....+..+...+
T Consensus 473 ~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~-~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l 551 (1293)
T KOG0996|consen 473 ETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHE-TGLKKVEELKGKLLASSESLKEKKTELDDLKEEL 551 (1293)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112222222222222222222233333333333333222211 1122233333344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhhc--CCccCCCcccccc
Q 001556 400 SALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHH--HKFKSPPIGPIGS 477 (1054)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~ 477 (1054)
..+..++.+....+..+..+...+...+..+...+..+.+..... ..-...+..+...+ +++ ++++|.+++
T Consensus 552 ~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~------~s~~kVl~al~r~kesG~i-~Gf~GRLGD 624 (1293)
T KOG0996|consen 552 PSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS------RSRNKVLDALMRLKESGRI-PGFYGRLGD 624 (1293)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHcCCC-Ccccccccc
Confidence 444444444444444444444444444444444444444322111 11112333333222 222 467888888
Q ss_pred ceeccCCCchHHHHHHHHhcccceeeecChhhHHHHHHHHHHhccCCcceEEEecCCCCCCCCCCCCCCCCCccchhcee
Q 001556 478 HVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQ 557 (1054)
Q Consensus 478 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 557 (1054)
+-.+ + ++|..||.. .++.+..+||++.+++..|..+++..+.++.+|+++|.......-..+...+...|.+++.+.
T Consensus 625 Lg~I-d-~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~ 701 (1293)
T KOG0996|consen 625 LGAI-D-EKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVK 701 (1293)
T ss_pred cccc-c-hHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhc
Confidence 7655 4 799999998 677899999999999999999999999999999999865422111111223355677888888
Q ss_pred cCchhHHHHhhccCCccEEEEecChHHHHHHhhhcCCCCcceeEcccCCeeeecCCccccccccccccCcccc-------
Q 001556 558 SDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLC------- 630 (1054)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 630 (1054)
+.++.+...+.. .+..++++++++.|.++.+....+ ++++|++|.++..+|.+++|+........+...
T Consensus 702 ~~d~~~r~aFYf--aLrdtLV~d~LeQAtRiaygk~rr--~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~ 777 (1293)
T KOG0996|consen 702 CKDEKFRPAFYF--ALRDTLVADNLEQATRIAYGKDRR--WRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSK 777 (1293)
T ss_pred cCCHHHHHHHHH--HHhhhhhhcCHHHHHHHhhcCCCc--eEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCH
Confidence 776654443331 123478899999999998866543 379999999999888877665433222111111
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 001556 631 ---GSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPP 707 (1054)
Q Consensus 631 ---~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 707 (1054)
..++.++........++..++..+......+......+...+..+......+-..+..+..++..++..+.... .
T Consensus 778 ~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~--~ 855 (1293)
T KOG0996|consen 778 ESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKV--V 855 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--C
Confidence 12333333333333333333333333333333333333333333322222222222222222222222211100 0
Q ss_pred CCcchHHHHHHHHHHHHHHHHH-------------HH---------------HHHHHHHHHHHHHHHH------------
Q 001556 708 SASAVDEISQEISNIQEEIQEK-------------EI---------------ILEKLQFSMNEAEAKV------------ 747 (1054)
Q Consensus 708 ~~~~~~~l~~~~~~l~~~~~~~-------------~~---------------~~~~~~~~~~~~~~~~------------ 747 (1054)
-...+..++..+..+..++..+ +. ++..+..++..+...+
T Consensus 856 d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~ 935 (1293)
T KOG0996|consen 856 DKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDR 935 (1293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcc
Confidence 0011111111122222222111 11 1111111111111111
Q ss_pred --HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001556 748 --EDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCR-- 823 (1054)
Q Consensus 748 --~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 823 (1054)
..++..+..+...+.....++..+...+..+......+...+.+..+.+ .++...+..+...+.........+..
T Consensus 936 ~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~-~E~k~~~~~~k~~~e~i~k~~~~lk~~r 1014 (1293)
T KOG0996|consen 936 NIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESL-KEIKKELRDLKSELENIKKSENELKAER 1014 (1293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111112222222222222222222222222222222222222222 22222222222222111111111111
Q ss_pred ------------HHHh----------------hCChhhhhhcCCCCCCCHHH---------HHHHHHHHHHHHHHH-hh-
Q 001556 824 ------------KASV----------------ICPESEIEALGGWDGSTPEQ---------LSAQVNRLNQRLKHE-SH- 864 (1054)
Q Consensus 824 ------------~~~~----------------~~~~~~~~~~~~~~~~~~~~---------l~~~~~~l~~~l~~~-~~- 864 (1054)
.+.. .+...+.......+....++ +...+.-++.++..+ +.
T Consensus 1015 Id~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~vd 1094 (1293)
T KOG0996|consen 1015 IDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREVD 1094 (1293)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCCC
Confidence 0000 00000000000011111122 222344455555543 21
Q ss_pred -hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCceeEEee
Q 001556 865 -QYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININ 943 (1054)
Q Consensus 865 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g~~~~~ 943 (1054)
.+..+|......|......+........+.++.+..|+ ..++..|..-|.-|...+...|.-+. +|+...+.+-
T Consensus 1095 ~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lr---k~RldEFm~gf~~Is~kLkemYQmIT--~GGdAeLElV 1169 (1293)
T KOG0996|consen 1095 LGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELR---KRRLDEFMAGFNIISMKLKEMYQMIT--LGGDAELELV 1169 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcceeEee
Confidence 12334555555555555555555555666666555444 45677888888888888888888654 4877787774
Q ss_pred cccceEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcC
Q 001556 944 YEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQ 1023 (1054)
Q Consensus 944 ~~~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~ 1023 (1054)
..-++++-+|.|...||.+.|..+.+||||||++++|||.|||+.|.|+||||+|||||+||-.|..++++.+.+-. +
T Consensus 1170 DslDPFseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT--k 1247 (1293)
T KOG0996|consen 1170 DSLDPFSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT--K 1247 (1293)
T ss_pred ccCCCcccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc--c
Confidence 33344433333333348889999999999999999999999999999999999999999999999888887777655 9
Q ss_pred CcEEEEeccCCCCCCCCCCC-ceEEecC
Q 001556 1024 GSQWIFITPHDVGLVKQGER-IKKQQMA 1050 (1054)
Q Consensus 1024 ~~Q~i~iT~~~~~~~~~~~~-~~v~~~~ 1050 (1054)
+.||||||.+.. |+.-+++ ++|++..
T Consensus 1248 NAQFIIISLRnn-MFELa~rLvGIYKtd 1274 (1293)
T KOG0996|consen 1248 NAQFIIISLRNN-MFELANRLVGIYKTD 1274 (1293)
T ss_pred CCeEEEEEehhh-HHHHHhhheeeEeec
Confidence 999999999985 7765444 8888754
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.5e-70 Score=573.89 Aligned_cols=988 Identities=16% Similarity=0.240 Sum_probs=527.2
Q ss_pred ceEeEEEEEecccccceEE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCC----ceEEEE
Q 001556 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC----SYAMVE 93 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~----~~~~v~ 93 (1054)
|+|+.|.|.||+||..+++ +|+|.||+|+|-||||||+|||+|||+||-....+.|++++.++|+.+. +.|.|+
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 8999999999999965544 9999999999999999999999999999999988899999999998766 899999
Q ss_pred EEEEecCcccccccc-cCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhc
Q 001556 94 VELKNRGEDAFKPEI-FGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1054)
Q Consensus 94 l~~~~~~~~~~~~~~-~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1054)
|+|+|.++..-.+.. ..++|+|+|.+. +|++.|+| ||...+. ..+.+++.+.+++++||+|+++||++...|+
T Consensus 81 VvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylI---NGh~a~~--~~vq~lF~SVqLNvNNP~FLIMQGrITkVLN 155 (1174)
T KOG0933|consen 81 VVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLI---NGHLAQN--SKVQDLFCSVQLNVNNPHFLIMQGRITKVLN 155 (1174)
T ss_pred EEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEE---cCeeCch--hHHHHHHHHhcccCCCCceEEecccchhhhc
Confidence 999998664222111 247899999999 99999999 5655543 7999999999999999999999999999999
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 172 SGNDKDKFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK--------PTEKELSELQRKIRNMEHVEEITQDLQRLK 243 (1054)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 243 (1054)
+.|.. ...+++++.+.... ..+.+.+...++..+..+. .+.-.+..++.+...+-++......++.+.
T Consensus 156 MKp~E---ILsMvEEAAGTrmy-e~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~ 231 (1174)
T KOG0933|consen 156 MKPSE---ILSMVEEAAGTRMY-ENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLS 231 (1174)
T ss_pred CCcHH---HHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98764 33334444332211 1122222222222222222 223345566666666666666666666666
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhHHHHHH--
Q 001556 244 KKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAE--------IAVMVEKTSEVRRR-- 313 (1054)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~-- 313 (1054)
.-....+|............++.+.+..+..+.+.+.....++..++.++.+++.. +..+..++..+...
T Consensus 232 R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~t 311 (1174)
T KOG0933|consen 232 RICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEIT 311 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHH
Confidence 65555555555555555555555555555555555555555555444444444331 11222222222221
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------
Q 001556 314 ------------KDELQQSISLATKEKLELEGELVRNTSYMQK-------MVNRVKGLEQQVHDIQEQHVR--------- 365 (1054)
Q Consensus 314 ------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~--------- 365 (1054)
+......++.+...+.+....+......+.. +..........++..+..+..
T Consensus 312 r~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~ 391 (1174)
T KOG0933|consen 312 REETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNE 391 (1174)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 2222222222222222222222222222222 111111111111111111110
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001556 366 ----NTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQ 441 (1054)
Q Consensus 366 ----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~ 441 (1054)
.++.++......+..+...+....-.+..+..++...+.+......+.......++.++..++.++..+..+.-..
T Consensus 392 ~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~ 471 (1174)
T KOG0933|consen 392 DEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKI 471 (1174)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 0112233333333333333333333334444444433333333333333333444444444444444333221100
Q ss_pred C------CccccCCcccHHH-------HHHHHHhhcCCccC--------CCccccccceeccCCCchHHHHHHHHhcccc
Q 001556 442 T------NKVTAFGGDRVIS-------LLRAIERHHHKFKS--------PPIGPIGSHVTLVNGDTWAPAVEQAIGRLLN 500 (1054)
Q Consensus 442 ~------~~~~~~~~~~~~~-------~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 500 (1054)
. .....+. ..+.. +...+....-.|.. .+.|.++.++.+++ ..+..|++.+.|+.+.
T Consensus 472 ~~~e~l~q~~~~l~-~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd-~~~~tAle~~aGgrLy 549 (1174)
T KOG0933|consen 472 GQEEALKQRRAKLH-EDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKD-RSYATALETTAGGRLY 549 (1174)
T ss_pred chHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCc-chHHHHHHHHhcCcce
Confidence 0 0000000 11111 22222111112221 25678888999988 8889999999999999
Q ss_pred eeeecChhhHHHHHHHHHHhc-cCCcceEEEecCCCCCCCCC-----CCCCCCCCccchhceecCchh--HHHHhhccCC
Q 001556 501 AFIVTDHKDALLLRGCAREAN-YNHLQIIIYDFSRPRLSLPH-----HMLPHTKHPTTLSVLQSDNPT--VINVLVDMGS 572 (1054)
Q Consensus 501 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~--~~~~l~~~~~ 572 (1054)
++||++......+.. +.. ..+++++|++........+. ..+...+..+.++.+..++.. +..+.
T Consensus 550 nvVv~te~tgkqLLq---~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefv----- 621 (1174)
T KOG0933|consen 550 NVVVDTEDTGKQLLQ---RGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFV----- 621 (1174)
T ss_pred eEEeechHHHHHHhh---cccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHH-----
Confidence 999998887765433 111 13567777763321111100 012234444556666655432 22222
Q ss_pred ccEEEEecChHHHHHHhhhcCCCCcceeEcccCCeeeecCCccccccccccccCc--cccCCHHHHHHHHHHHHHHHHHH
Q 001556 573 AERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTG--RLCGSYDEKIKDLERAALHVQEE 650 (1054)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~ 650 (1054)
.|..++|++.+.|..+++...++. +.+|++|.++.+.|..++|....+..... .-+..++.++...+.+++.++.+
T Consensus 622 FG~tlVc~~~d~AKkVaf~~~i~~--rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~e 699 (1174)
T KOG0933|consen 622 FGSTLVCDSLDVAKKVAFDPKIRT--RSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERE 699 (1174)
T ss_pred hCceEEecCHHHHHHhhccccccc--ceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999876543 56889999988888776654433221000 00111223333333333333333
Q ss_pred HHHHHHHHH---HHHHHH--------------------------HHHHHHHHHHHHHHHHHH-------HH---------
Q 001556 651 AQQCRKRKR---DSEERL--------------------------QDLQQHQQNVKRRCFSAE-------RN--------- 685 (1054)
Q Consensus 651 ~~~l~~~~~---~l~~~~--------------------------~~l~~~~~~~~~~~~~l~-------~~--------- 685 (1054)
+..+..... .+..++ ..+..++.+.+.++.... ..
T Consensus 700 L~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 700 LKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322222111 011110 111111111111111111 11
Q ss_pred ---------HHHHHHHHHHHHhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 686 ---------RMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQS 756 (1054)
Q Consensus 686 ---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 756 (1054)
+..+...++.+..+.+. .....+.-+.+...+..+...++..+......+..+...++.+..++..
T Consensus 780 d~~~~re~rlkdl~keik~~k~~~e~-----~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~ 854 (1174)
T KOG0933|consen 780 DAKANRERRLKDLEKEIKTAKQRAEE-----SSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGN 854 (1174)
T ss_pred HhhhhhHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112222222221 1222222222233333333333333333333333333333333333333
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 757 LCESAKEEVDTFEAAEKELMEIEKNLQTSES---------------------EKAHYEDVMRTRVVGAIKEAESQYRELE 815 (1054)
Q Consensus 757 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 815 (1054)
+...+.........+..++......+..... .+..+...+ ..+..+-..+...+..+.
T Consensus 855 l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~-~~~~~e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 855 LEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEV-TKLESEKANARKEVEKLL 933 (1174)
T ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHH-HHhhhhHHHHHHHHHHHH
Confidence 3322222222222222222222222211111 111122222 222222222233333333
Q ss_pred HHHHHHHHHHHhhCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHH----HhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001556 816 LLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKH----ESHQYSESIEDLRMLYEEKEHKILRKQQTY 891 (1054)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 891 (1054)
.+..|+..+...+......+++..++ ..+...++..+...... +++.+...++.++..+..+..+.+.+....
T Consensus 934 ~k~~wi~~ek~~fgk~gt~yDf~~~~---p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk 1010 (1174)
T KOG0933|consen 934 KKHEWIGDEKRLFGKKGTDYDFESYD---PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDK 1010 (1174)
T ss_pred HhccchhHHHHhhcCCCCccccccCC---HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333333333333333344444433 33444444444444333 456667788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCceeEEeeccc-----ceEEEEEecCCCCCCCcccC
Q 001556 892 QAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEE-----KTLSIEVKMPQDASSSNVRD 966 (1054)
Q Consensus 892 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g~~~~~~~~-----~~~~i~v~~~~~~~~~~~~~ 966 (1054)
..+...|..+++. ....+...+..++..|..+|+.+++ |. ...+.+++ +++.+.|.+ |+.|..
T Consensus 1011 ~kI~ktI~~lDe~---k~~~L~kaw~~VN~dFG~IFs~LLP--ga--~AkL~Ppeg~~~~dGLEvkV~~-----G~iWKe 1078 (1174)
T KOG0933|consen 1011 SKIKKTIEKLDEK---KREELNKAWEKVNKDFGSIFSTLLP--GA--MAKLEPPEGKTVLDGLEVKVKF-----GGIWKE 1078 (1174)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhCC--Cc--cccccCCCCCccccceEEEEEe-----CccHHH
Confidence 9999999777643 3346667788889999999999888 33 33344443 357888886 455654
Q ss_pred -CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 967 -TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 967 -~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.+.||||+||++||+|+|||..+.|+|||||||||++||-++- ..++.|++- +..|.||||+|.+.. |+..++.+.
T Consensus 1079 SL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHT-QNIG~mIkt-hF~~sQFIVVSLKeG-MF~NANvLF 1155 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHT-QNIGRMIKT-HFTHSQFIVVSLKEG-MFNNANVLF 1155 (1174)
T ss_pred HHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhh-hhHHHHHHh-hCCCCeEEEEEchhh-ccccchhhh
Confidence 6889999999999999999999999999999999999999754 455555542 258999999999985 887776654
Q ss_pred EEecCCC
Q 001556 1046 KQQMAAP 1052 (1054)
Q Consensus 1046 v~~~~~~ 1052 (1054)
-.+..|.
T Consensus 1156 rtrF~DG 1162 (1174)
T KOG0933|consen 1156 RTRFVDG 1162 (1174)
T ss_pred eeeeecC
Confidence 4455444
No 6
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.7e-68 Score=565.84 Aligned_cols=976 Identities=16% Similarity=0.213 Sum_probs=542.0
Q ss_pred CceEeEEEEEecccccce-EEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEE
Q 001556 19 AGTITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (1054)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~-~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~ 97 (1054)
||+|..|++.||+||.++ .|.|...||.|+||||||||++||||.||||-+++. +|++.+.|+|+.-+..+.|.+.|.
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~~FTaIIGPNGSGKSNlMDAISFVLGekss~-LR~~~lkdLIyg~~i~~~v~l~Y~ 79 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSH-LRVSHLKDLIYGKPIRKPVTLKYE 79 (1141)
T ss_pred CCceeeeehhccccccCceeecCchhceeeeCCCCCchHHHHHHHHHHhcCCCcc-cccchHHHHhcCCccCCchhheee
Confidence 689999999999999655 564444899999999999999999999999999887 799999999995555566776665
Q ss_pred ecCcccccccccCCceEEEEEeeCCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhcCCChhh
Q 001556 98 NRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKD 177 (1054)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 177 (1054)
-+ .|....+.|.+.+|+++|.| +|..|+. .+|...+..+|+-+....|.+-||.+..+...+|..
T Consensus 80 ~~---------dg~~~~F~R~I~~G~seY~I---Dne~VT~--eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkE- 144 (1141)
T KOG0018|consen 80 EG---------DGETRRFTRAINGGTSEYMI---DNEIVTR--EEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKE- 144 (1141)
T ss_pred cC---------CchhhhhhhhhcCCceeEEE---cceeccH--HHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHH-
Confidence 54 25567889988888999999 7888865 799999999999999999999999999888776655
Q ss_pred hHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 001556 178 KFKATLLQQVNDLLQS------IYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWV 251 (1054)
Q Consensus 178 ~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 251 (1054)
...+++++.+.++. +...+..+.......-.....+..+....+......+.+..+..+...+.....-+++
T Consensus 145 --lt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qL 222 (1141)
T KOG0018|consen 145 --LTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWEL 222 (1141)
T ss_pred --HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777665443 3333334444444444455566666666666666667777777777777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHH------HHHHHHHHH
Q 001556 252 YDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLR-------DCFMKKKAEIAVMVEKTSE------VRRRKDELQ 318 (1054)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ 318 (1054)
...+..+.....++..+.+.+..+...++....++.... .++......+...+..+.+ .......+.
T Consensus 223 fhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k 302 (1141)
T KOG0018|consen 223 FHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLK 302 (1141)
T ss_pred hhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccch
Confidence 666666666666666666665555544444433333332 2222222222222222222 111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------------HHH
Q 001556 319 QSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNT----------------------------QAE 370 (1054)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------------------~~~ 370 (1054)
..+...+..+...+.........++.++.++..+....+....++.... ..+
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~e 382 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEE 382 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHH
Confidence 3333333333333333333333333333333333222222221111000 001
Q ss_pred HH---------------------HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 371 ES---------------------EIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCRE 429 (1054)
Q Consensus 371 ~~---------------------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (1054)
+. +++..+..+...+.....++..+...+..+......+...+..++........+...
T Consensus 383 l~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e 462 (1141)
T KOG0018|consen 383 LEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYE 462 (1141)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHH
Confidence 11 111111111112211112222222222222222222222222222222222222222
Q ss_pred HHHHHHHHHHhcCCccccCC-cccHHHHHHHHHhhcCCccCCCccccccceeccCCCchHHHHHHHHhcccceeeecChh
Q 001556 430 IRSEIRELQQHQTNKVTAFG-GDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHK 508 (1054)
Q Consensus 430 l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 508 (1054)
+..++.+............. +.........+...+.+| ++++|.+.+++.... ..|..|+..++|....+++|++..
T Consensus 463 ~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~f-Pgv~GrviDLc~pt~-kkyeiAvt~~Lgk~~daIiVdte~ 540 (1141)
T KOG0018|consen 463 LNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLF-PGVYGRVIDLCQPTQ-KKYEIAVTVVLGKNMDAIIVDTEA 540 (1141)
T ss_pred HHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhC-CCccchhhhcccccH-HHHHHHHHHHHhcccceEEeccHH
Confidence 22222222222111111111 011222334444555555 456688877776655 679999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCcceEEEecCCCCCCCCCCCCCCCCCccchhceecCchhHHHHhhccCCccEEEEecChHHHHHH
Q 001556 509 DALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAV 588 (1054)
Q Consensus 509 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 588 (1054)
++..|..+++..+.+..+|+|++.....+.....+ ...++..+++++..++..-..+. ...+..++|++.+.|..+
T Consensus 541 ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr-~~~g~rlv~Dvi~ye~e~eka~~---~a~gn~Lvcds~e~Ar~l 616 (1141)
T KOG0018|consen 541 TARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLR-ELGGVRLVIDVINYEPEYEKAVQ---FACGNALVCDSVEDARDL 616 (1141)
T ss_pred HHHHHHHHHHHhccCCccccchhhhhcCccccccc-CcCCeEEEEEecCCCHHHHHHHH---HHhccceecCCHHHHHHh
Confidence 99999999999999999999998654333222212 23446666777776654322222 223568999999999999
Q ss_pred hhhcCCCCcceeEcccCCeeeecCCccccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 001556 589 AFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQQCRK---RKRDSEERL 665 (1054)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~l~~---~~~~l~~~~ 665 (1054)
.+.+..+ ..+++++|.++..+|..++|..... |. +..+..|...-..+..++.++.. +....+.++
T Consensus 617 ~y~~~~r--~k~valdGtl~~ksGlmsGG~s~~~-wd--------ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i 685 (1141)
T KOG0018|consen 617 AYGGEIR--FKVVALDGTLIHKSGLMSGGSSGAK-WD--------EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKI 685 (1141)
T ss_pred hhccccc--ceEEEeeeeEEeccceecCCccCCC-cC--------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9877653 3789999999998887666554433 43 22333333333333333322222 223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001556 666 QDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNE--- 742 (1054)
Q Consensus 666 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~--- 742 (1054)
..++..+.-...++..+...+...+.+++.....+.. ....+..+...+......+..++.....+...+-.
T Consensus 686 ~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~-----~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~ 760 (1141)
T KOG0018|consen 686 HGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDE-----FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFC 760 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444333333333333333333333333333332 22333333333333333333332222222111100
Q ss_pred -------------------------H-------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----
Q 001556 743 -------------------------A-------------------EAKVEDLKLSFQSLCESAKEEVDTFEAAEKE---- 774 (1054)
Q Consensus 743 -------------------------~-------------------~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~---- 774 (1054)
+ ...++.++..+..++.++..+...-..+...
T Consensus 761 ~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~ 840 (1141)
T KOG0018|consen 761 RRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI 840 (1141)
T ss_pred hhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH
Confidence 0 0111111111111111111111111111111
Q ss_pred ----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----hhhhhh---
Q 001556 775 ----------LMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICP-----ESEIEA--- 836 (1054)
Q Consensus 775 ----------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~--- 836 (1054)
....+.++.........+...+ ..+...+..++..+..+..+...+...|...+. ...+.+
T Consensus 841 ~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~-tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~ 919 (1141)
T KOG0018|consen 841 EELEKKNKSKFEKKEDEINEVKKILRRLVKEL-TKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVI 919 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccce
Confidence 1111111112222222222222 223333333333333333333333333221110 001111
Q ss_pred -----cCCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 001556 837 -----LGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRAC----REALDS 907 (1054)
Q Consensus 837 -----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l----~~~~~~ 907 (1054)
++++ +..+. |+.+++.....+....++ -.+...++.++ +..+..+.+..+..-..+ ......
T Consensus 920 ~ieidy~~L-~~~y~-L~~kl~e~~~~l~~~~Pn-----~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~ 990 (1141)
T KOG0018|consen 920 GIEIDYSGL-PREYK-LQQKLEEKQSVLNRIAPN-----LKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKK 990 (1141)
T ss_pred ecccccccc-cHHHH-HHHHHHHHHHHHHHhCcc-----hHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12222 666666666665553332 12333333333 344444444444333322 233456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCceeEEeecccceEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHHHHhh
Q 001556 908 RWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALH 987 (1054)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~~al~ 987 (1054)
++..|..+|.++...++.+|..|.. ..+..++.++.++.|+.-++.++..|||+.|+++..|||||++++|||||||++
T Consensus 991 R~~~F~~~F~~va~~Id~IYK~Ltn-t~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLALLFaih 1069 (1141)
T KOG0018|consen 991 RYERFMACFEHVADNIDRIYKELTN-TEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALALLFAIH 1069 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cccceeecCCCCCcchhcCccccccCCccccCchhhcCccHHHHHHHHHHHHhc
Confidence 7788999999999999999999884 345668889988888888999999999999999999999999999999999999
Q ss_pred hhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEEec
Q 001556 988 EMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQM 1049 (1054)
Q Consensus 988 ~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~ 1049 (1054)
.|.|+||+||||||++||..|. ..+..|+++.++|+||||.++..+..++..|+|++=
T Consensus 1070 sy~PaPFfvlDEiDAALDntNi----~kvasyIr~~~~Q~IvISLK~~~y~kadaLVGvyr~ 1127 (1141)
T KOG0018|consen 1070 SYKPAPFFVLDEIDAALDNTNI----GKVASYIRSSNFQFIVISLKEEFYQKADALVGVYRD 1127 (1141)
T ss_pred cCCCCCceehhhHHHHhhhccH----HHHHHHHhcCCceEEEEeccHHHhhhhhceeeeccC
Confidence 9999999999999999999995 556666667899999999999766667777999875
No 7
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.1e-66 Score=541.91 Aligned_cols=976 Identities=15% Similarity=0.230 Sum_probs=509.7
Q ss_pred ceEeEEEEEecccccceEE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCc----eEEEE
Q 001556 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAMVE 93 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~----~~~v~ 93 (1054)
|+|+.|.|.||++|.+.++ +|+|..|+|+|.||||||+++.||.|+|.+..+...+... ..++|.|.. .|+|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~E~R-~gLlHEGsG~~V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKREER-QGLLHEGSGAMVMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCHHHH-hhhhhcCCCcceEEEEEE
Confidence 8999999999999976554 5999999999999999999999999999887765433333 567887764 69999
Q ss_pred EEEEecCcccccccccCCceEEEEEeeCCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhcCC
Q 001556 94 VELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSG 173 (1054)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~ 173 (1054)
|+|.|.+.... ..+.+++|.|+++-++..|++ +++.|+ ..++-.++.+.|+...||+++++||.+..+..+.
T Consensus 80 IvF~nsdnr~~---~~k~Ev~lrRtVGlKKDeY~l---D~k~Vt--k~evvnLLESAGFSrsNPYyIV~QGkI~~La~ak 151 (1200)
T KOG0964|consen 80 IVFDNSDNRLP---RGKSEVSLRRTVGLKKDEYFL---DNKMVT--KGEVVNLLESAGFSRSNPYYIVPQGKINELANAK 151 (1200)
T ss_pred EEEeCcccccC---CCCCeEEEEEeecccchhhhc---cccccc--HHHHHHHHHhcCcccCCCceEeechhhHHhhcCC
Confidence 99999865422 346789999999988899999 688885 4799999999999999999999999999987654
Q ss_pred ChhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001556 174 NDKDKFKATLLQQVND------LLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLA 247 (1054)
Q Consensus 174 ~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 247 (1054)
+.. +-.++.++.+ ..+..-.-+++....-..+..-+..++..+..++.+.+.++.+.++......++..+.
T Consensus 152 -D~e--RL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiY 228 (1200)
T KOG0964|consen 152 -DSE--RLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIY 228 (1200)
T ss_pred -cHH--HHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhh
Confidence 333 3344444432 1111222333444444445555666666666777777777777666666666666655
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------------
Q 001556 248 WSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKD------------ 315 (1054)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 315 (1054)
..++.+...++..+.......-.+-......+.........+..++.+++..+..+..+.+.+.....
T Consensus 229 drEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~ 308 (1200)
T KOG0964|consen 229 DRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELK 308 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44444444444444443333333322222222222333333333333333332222222222222211
Q ss_pred --HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 001556 316 --EL--------------QQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVR-------------- 365 (1054)
Q Consensus 316 --~l--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------- 365 (1054)
.+ ...+..+...+...+.++....-....+..+-..+..++..++.....
T Consensus 309 ~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk 388 (1200)
T KOG0964|consen 309 IKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSK 388 (1200)
T ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcH
Confidence 11 111112222222222222222222222222222222222222221110
Q ss_pred -----hhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhHH-------hHHHHH-------HHHHHHHHH
Q 001556 366 -----NTQAEES--------------EIEAKLKELQCEIDAANITLSRMKE-------EDSALS-------EKLSKEKNE 412 (1054)
Q Consensus 366 -----~~~~~~~--------------~~~~~~~~l~~~l~~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~ 412 (1054)
+...++. .++.++..++..+.+...++..+.. ++..+. .++.++...
T Consensus 389 ~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 389 EERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 1122222222222222222222222 222222 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCcccHHHHHHHHHhhcCCccCCCccccccceeccCCCchHHHH
Q 001556 413 IRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTA-FGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAV 491 (1054)
Q Consensus 413 ~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1054)
...+..+-..++..+..+...+......+...+.. .. .++.....-+.... ..+++|++++++.|. +.|.+|+
T Consensus 469 Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~-nGi~~v~~I~e~~k---~ngv~G~v~eL~~v~--~~f~tav 542 (1200)
T KOG0964|consen 469 RKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVA-NGIDSVRKIKEELK---PNGVFGTVYELIKVP--NKFKTAV 542 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh-hhhHHHHHHHHHhc---ccccceehhhhhcCC--HHHHhHH
Confidence 22222222333333333333333322222211110 00 11222222222222 256889999999885 5899999
Q ss_pred HHHHhcccceeeecChhhHHHHHHHHHHhccCCcceEEEecCCCCCCCCCCCCC-CCCCccchhceecCch---hHHHHh
Q 001556 492 EQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLP-HTKHPTTLSVLQSDNP---TVINVL 567 (1054)
Q Consensus 492 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~---~~~~~l 567 (1054)
+...|+.++++||++.+.+..+...+.....++++|.|++...+. ....| ....-+++..|..++. ++..++
T Consensus 543 EvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r----~v~yp~~sdaiPli~kl~y~p~fdka~k~Vf 618 (1200)
T KOG0964|consen 543 EVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKAR----DVEYPKDSDAIPLISKLRYEPQFDKALKHVF 618 (1200)
T ss_pred hhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchh----hccCCCCCCccchHHHhCcchhhHHHHHHHh
Confidence 999999999999999998877777776667789999998754431 11111 1334566677766543 233333
Q ss_pred hccCCccEEEEecChHHHHHHhhhcCCCCcceeEcccCCeeeecCCcccccccccc--ccCccccCCHHHHHHHHHHHHH
Q 001556 568 VDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRR--LRTGRLCGSYDEKIKDLERAAL 645 (1054)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~ 645 (1054)
+..++|.++..+........+ .++|++|..++..|..++|...... +....-......++..++..+.
T Consensus 619 ------gktivcrdl~qa~~~ak~~~l----n~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~ 688 (1200)
T KOG0964|consen 619 ------GKTIVCRDLEQALRLAKKHEL----NCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLD 688 (1200)
T ss_pred ------CceEEeccHHHHHHHHHhcCC----CeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 468899999999988877655 6899999988888777655432211 1000001122233333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhhhc------CC
Q 001556 646 HVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELA--------------FQDVKNSFAAD------AG 705 (1054)
Q Consensus 646 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~l~~~~~~~------~~ 705 (1054)
.+...+.....++..+...++.+......+......+..++..+..+ +..+...+..+ ..
T Consensus 689 ~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e 768 (1200)
T KOG0964|consen 689 EVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFE 768 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333333333333333322222222222222222222222111 11111111110 00
Q ss_pred ----CCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH-----HH
Q 001556 706 ----PPSASA-VDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVED---------------LKLSFQSLC-----ES 760 (1054)
Q Consensus 706 ----~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~-----~~ 760 (1054)
..+... -.+-.+++..+..++..+..++..+......+...... +...+..+. ..
T Consensus 769 ~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~e 848 (1200)
T KOG0964|consen 769 SELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSE 848 (1200)
T ss_pred HHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhh
Confidence 000000 00111223333333333333333222222222111111 111111110 11
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Q 001556 761 AKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIK--------------------EAESQYRELELLRQD 820 (1054)
Q Consensus 761 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~~~~~~l~~~~~~ 820 (1054)
+.....++.....+++....++..+...+......+ ..+...++ .+......|-...++
T Consensus 849 l~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~-~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~KreE 927 (1200)
T KOG0964|consen 849 LELEKSELESEEKRVEAAILELKTLQDSIDKKKAEI-KEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKKREE 927 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222222222222222222211111 11111111 011111111112222
Q ss_pred HHHHHHhhCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH---hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 821 SCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHE---SHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREK 897 (1054)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 897 (1054)
+...+..++.-+ ...|..+-.....++..++.....+++.+ |..+..++....++.+.+..+..++......+.+.
T Consensus 928 ~~ekIr~lG~Lp-~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eL 1006 (1200)
T KOG0964|consen 928 CCEKIRELGVLP-EDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILEL 1006 (1200)
T ss_pred HHHHHHhcCCCc-hHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 222222222111 11122344567888999999888888763 44455566666666666666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCceeEEe--------------eccc------------ceEEE
Q 001556 898 VRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKINI--------------NYEE------------KTLSI 951 (1054)
Q Consensus 898 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g~~~~--------------~~~~------------~~~~i 951 (1054)
|..|+. ...+.+...|..+...|+..|..+.+ |+.|.+.. ++++ .+++|
T Consensus 1007 i~vLdq---rK~eai~~TFkqV~knFsevF~~LVp--~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI 1081 (1200)
T KOG0964|consen 1007 ITVLDQ---RKYEAIDLTFKQVKKNFSEVFSRLVP--GGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISI 1081 (1200)
T ss_pred HHHHHH---hhHHHHHHHHHHHHHHHHHHHHHhCC--CCceeehhhccccccccccccccccccccccccchhhccceeE
Confidence 544432 33457777888888888888888877 55552222 1221 24788
Q ss_pred EEecCCCCCCCcccCCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEec
Q 001556 952 EVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFIT 1031 (1054)
Q Consensus 952 ~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT 1031 (1054)
.|.|+++ .+....+..||||+++++||||+||++.|+|+|||+|||||++||+-.|.++.+++.+++ .+.|||+-|
T Consensus 1082 ~VSFnsk--q~E~~~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS--~~aQFI~TT 1157 (1200)
T KOG0964|consen 1082 KVSFNSK--QGETLEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELS--DSAQFITTT 1157 (1200)
T ss_pred EEEeecC--ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHh--hccceEeec
Confidence 8888653 235557889999999999999999999999999999999999999999999999999998 889999999
Q ss_pred cCCCCCCC
Q 001556 1032 PHDVGLVK 1039 (1054)
Q Consensus 1032 ~~~~~~~~ 1039 (1054)
-+|. |..
T Consensus 1158 FRpE-ll~ 1164 (1200)
T KOG0964|consen 1158 FRPE-LLS 1164 (1200)
T ss_pred ccHH-HHH
Confidence 9995 444
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=2e-65 Score=645.47 Aligned_cols=982 Identities=18% Similarity=0.241 Sum_probs=481.4
Q ss_pred eEeEEEEEeccccc-ceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhc-----CCceEEEEE
Q 001556 21 TITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVEV 94 (1054)
Q Consensus 21 ~i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~-----g~~~~~v~l 94 (1054)
+|++|.|.||++|. .++|+|+||+|+|+||||||||||+|||.||||+.+...+|+..+.++|+. +...|.|.+
T Consensus 1 ~i~~l~l~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~ 80 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTV 80 (1164)
T ss_pred CeeEEEEeCeeeECCeeEEeecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEE
Confidence 58999999999996 589999999999999999999999999999999987766788888899987 445789999
Q ss_pred EEEecCcccccccccCCceEEEEEee---CCC-CeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhh
Q 001556 95 ELKNRGEDAFKPEIFGDSIIIERRIT---EST-STTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (1054)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~---~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 170 (1054)
+|.+++.. +++.+.|.|++. ++. +.|++ ||.+++ ..++..++..+|++.+++. ++.||.+..|+
T Consensus 81 ~f~~~~~~------~~~~~~i~r~~~~~~~~~~~~~~~---n~~~~~--~~~~~~~l~~~~~~~~~~~-~~~qg~~~~~~ 148 (1164)
T TIGR02169 81 TFKNDDGK------FPDELEVVRRLKVTDDGKYSYYYL---NGQRVR--LSEIHDFLAAAGIYPEGYN-VVLQGDVTDFI 148 (1164)
T ss_pred EEEcCCCC------CCCcEEEEEEEEEcCCCCcceEEE---CCcccc--HHHHHHHHHHcCCCcCcce-EEecchHHHHH
Confidence 99886432 114578888765 333 57888 687774 4799999999998887665 57799999999
Q ss_pred cCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001556 171 HSGNDKDKFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSW 250 (1054)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 250 (1054)
.+.|.. +..+++.+.+ +..+...+......+..+...+..+...+..+..++..++.+.....++..+...+...+
T Consensus 149 ~~~~~~---r~~~~~~~~g-~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~ 224 (1164)
T TIGR02169 149 SMSPVE---RRKIIDEIAG-VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYE 224 (1164)
T ss_pred CCCHHH---HHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887654 4445555544 444445555555555566666666666666666666655555555544444444433222
Q ss_pred H-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhhH
Q 001556 251 V-------YDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEI---------------AVMVEKTS 308 (1054)
Q Consensus 251 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~~~ 308 (1054)
+ ..+..++..+..++..+...+..+...+..+...+..+...+..+...+ ..+...+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 304 (1164)
T TIGR02169 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 2 2222223333333333333332222222222222222222222222111 11111111
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh-
Q 001556 309 EVRRRKDELQQSISLA--------------TKEKLELEGELVRNTSYMQKMVNRVKGLEQQ-------VHDIQEQHVRN- 366 (1054)
Q Consensus 309 ~~~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~- 366 (1054)
.+...+..+...+..+ ...+..+...+.....++..+...+..+... +..+.......
T Consensus 305 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (1164)
T TIGR02169 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111 1111111111111111111112222111111 11111110000
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHhHHHHHHHHHHHHHHHHHH-------HHHH-------
Q 001556 367 -----TQAEESEIEAKLKELQCEIDAAN-------ITLSRMKEEDSALSEKLSKEKNEIRRI-------SDEI------- 420 (1054)
Q Consensus 367 -----~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~------- 420 (1054)
....+..+...+..+..++..+. ..+..+...+..+..++..+...+..+ ..++
T Consensus 385 ~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 464 (1164)
T TIGR02169 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL 464 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111111111111111111 111111111111111111111111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHH-------HhcCCc---cccCCcc-cHHHHHHHHHhhcCCccCCCccccccceeccCCCchHH
Q 001556 421 EDYDKKCREIRSEIRELQ-------QHQTNK---VTAFGGD-RVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAP 489 (1054)
Q Consensus 421 ~~~~~~~~~l~~~~~~l~-------~~~~~~---~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1054)
..++.++..+...+..+. ...... ...+.+. ........+. ... ..+++|++++++.+. +.|..
T Consensus 465 ~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~--~~~-~~g~~g~l~dli~v~--~~y~~ 539 (1164)
T TIGR02169 465 SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVL--KAS-IQGVHGTVAQLGSVG--ERYAT 539 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH--hcC-CCCceecHHHhcCcC--HHHHH
Confidence 111111111111111111 110000 0000000 0000000110 111 134667788888774 79999
Q ss_pred HHHHHHhcccceeeecChhhHHHHHHHHHHhccCCcceEEEecCCCCCCCCCCCCCCCCCccchhceecCch--hHHHHh
Q 001556 490 AVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNP--TVINVL 567 (1054)
Q Consensus 490 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~l 567 (1054)
|++.++|..+.++||++..++..+..+++..+.++.+|+|++...+.........+++..+++.+.+..++. .+..++
T Consensus 540 Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 619 (1164)
T TIGR02169 540 AIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYV 619 (1164)
T ss_pred HHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCcccccCCCchHHHHHHccCcHHHHHHHHHH
Confidence 999999999999999999999999999998888999999886443211000111111223334455554432 122222
Q ss_pred hccCCccEEEEecChHHHHHHhhhcCCCCcceeEcccCCeeeecCCcccccccccc-ccCcc----ccCCHHHHHHHHHH
Q 001556 568 VDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRR-LRTGR----LCGSYDEKIKDLER 642 (1054)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~~l~~ 642 (1054)
++..++|++.+.+..+.. ...+||++|.++.++|.+++|...... ..... .+..+..++..++.
T Consensus 620 -----lg~~~v~~~l~~a~~~~~------~~~~vTldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 688 (1164)
T TIGR02169 620 -----FGDTLVVEDIEAARRLMG------KYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKR 688 (1164)
T ss_pred -----CCCeEEEcCHHHHHHHhc------CCcEEEeCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHH
Confidence 334678999998888763 126899999999887776555321100 00000 11122233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhhcCC--C
Q 001556 643 AALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRR--------------CFSAERNRMSKELAFQDVKNSFAADAG--P 706 (1054)
Q Consensus 643 ~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~l~~~~~~~~~--~ 706 (1054)
++..+...+..+...+..+...+..+...+..+..+ +..+...+..+...+..+..++..... .
T Consensus 689 ~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~ 768 (1164)
T TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE 768 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333322222222222222111111 111111111111111111111111000 0
Q ss_pred CCCcchHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 001556 707 PSASAVDEISQ-------------------EISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVD- 766 (1054)
Q Consensus 707 ~~~~~~~~l~~-------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 766 (1054)
.+...+..+.. ++..+..++..+...+..+...+..+...+..+..++..+...+..+..
T Consensus 769 ~l~~~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~ 848 (1164)
T TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111 1111222222222222222222222221211111111111111111111
Q ss_pred ------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHH-------HHHHHHH-------HHH
Q 001556 767 ------TFEAAEKELMEIEKNLQTSESEKAHYEDVMR------TRVVGAIKEAESQ-------YRELELL-------RQD 820 (1054)
Q Consensus 767 ------~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~-------~~~l~~~-------~~~ 820 (1054)
.+..+...+..+...+..+...+..+...+. ..+...+..+... +..+... +..
T Consensus 849 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~ 928 (1164)
T TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA 928 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122222222222222222222220 1111111111111 1111111 111
Q ss_pred HHHHHHhhCChh-hhhhcCCCCCCCHHHHHHHHHHHHHHHHHH---hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 821 SCRKASVICPES-EIEALGGWDGSTPEQLSAQVNRLNQRLKHE---SHQYSESIEDLRMLYEEKEHKILRKQQTYQAFRE 896 (1054)
Q Consensus 821 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 896 (1054)
+...+....... ....... .......+..++..+..++..+ +..+...|+.+..+|..+..++.++......+..
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~ 1007 (1164)
T TIGR02169 929 LEEELSEIEDPKGEDEEIPE-EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007 (1164)
T ss_pred HHHHHHHhhhhhhhhhhccc-ccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111000 0000000 0234677888888888877763 3334456777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCceeEEeeccc----ceEEEEEecCCCCCCCcccCCCCCCC
Q 001556 897 KVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEE----KTLSIEVKMPQDASSSNVRDTRGLSG 972 (1054)
Q Consensus 897 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g~~~~~~~~----~~~~i~v~~~~~~~~~~~~~~~~lSg 972 (1054)
.|..++. .+...|...|..+...|..+|..+| |+.|.+.++.++ .++.+.|.| ++....++..|||
T Consensus 1008 ~i~~l~~---~~~~~f~~~f~~~~~~f~~~~~~l~---~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lSg 1077 (1164)
T TIGR02169 1008 RIEEYEK---KKREVFMEAFEAINENFNEIFAELS---GGTGELILENPDDPFAGGLELSAKP----KGKPVQRLEAMSG 1077 (1164)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh---CCeEEEEecCCCCcccCCeEEEEEc----CCCCCCcchhcCc
Confidence 7766663 4455677788888888888888887 778888886533 356777775 5556667889999
Q ss_pred ChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEE
Q 001556 973 GERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQ 1047 (1054)
Q Consensus 973 GErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~ 1047 (1054)
||+++++||++||+|.+.|+||+||||||++||+.++..++..|..++ .++|||||||++..+..++..+.|.
T Consensus 1078 ge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~--~~~~~i~~t~~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1078 GEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA--GEAQFIVVSLRSPMIEYADRAIGVT 1150 (1164)
T ss_pred chHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHhcceeEeEE
Confidence 999999999999999999999999999999999999999999888876 6799999999997554344334554
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=1.1e-56 Score=569.72 Aligned_cols=990 Identities=17% Similarity=0.245 Sum_probs=458.5
Q ss_pred eEeEEEEEeccccc-ceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCC------ceEEEE
Q 001556 21 TITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYAMVE 93 (1054)
Q Consensus 21 ~i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~------~~~~v~ 93 (1054)
+|.+|.|.||++|. .++|+|+||+|+|+|||||||||||+||.||||+.++..+|+.++.++|+.|. ..+.|.
T Consensus 1 ~i~~l~~~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~ 80 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTINFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVE 80 (1179)
T ss_pred CeeEEEEeCccccCCCeeEEecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEE
Confidence 48999999999995 57999999999999999999999999999999998877789999999999887 368999
Q ss_pred EEEEecCcccccccccCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhcC
Q 001556 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (1054)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 172 (1054)
++|.+.+. +.|.+....++|.|++. ++.+.|++ +|.+++ ..++..++..+|++.+++ .|++||.+..|+.+
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~i~r~~~~~~~~~~~~---~~~~~~--~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~ 152 (1179)
T TIGR02168 81 LVFDNSDG--LLPGADYSEISITRRLYRDGESEYFI---NGQPCR--LKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEA 152 (1179)
T ss_pred EEEecCCC--CCCCCCCCeEEEEEEEeeCCCceeeE---CCCccc--HHHHHHHHhccCCCcccc-hheecccHHHHHcC
Confidence 99987532 22211125689999998 67788888 576663 467889999999988765 68999999999987
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001556 173 GNDKDKFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVY 252 (1054)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 252 (1054)
+|.. +..+++.+.+ +..+...+......+..+...+..+..++..+..+...++.+..+..++..+...+...++.
T Consensus 153 ~~~~---~~~~~~~~~~-~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~ 228 (1179)
T TIGR02168 153 KPEE---RRAIFEEAAG-ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELA 228 (1179)
T ss_pred CHHH---HHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 2333333322 33333344444444444555555555555555555555555444444444444444333222
Q ss_pred HHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------
Q 001556 253 DVDRQLKEQTLKIEKL-------KDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRK----------- 314 (1054)
Q Consensus 253 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------- 314 (1054)
.+...+..+...+..+ ...+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~ 308 (1179)
T TIGR02168 229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR 308 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2223333333332222 2222222222222222222222222222222222222222222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hh-------HHHHHHHHHHH
Q 001556 315 ---DELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVR------NT-------QAEESEIEAKL 378 (1054)
Q Consensus 315 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~ 378 (1054)
..+...+..+..++..+...+..+...+..+...+..+...+..+...+.. .. ...+..+...+
T Consensus 309 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (1179)
T TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222222222222222222222211111111111110 00 01111122222
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHH-------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 001556 379 KELQCEIDAANITLSRMKEEDSALSEK-------LSKEKNEI-----RRISDEIEDYDKKCREIRSEIRE-------LQQ 439 (1054)
Q Consensus 379 ~~l~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-----~~l~~~~~~~~~~~~~l~~~~~~-------l~~ 439 (1054)
..+..++..+...+..+...+..+... +..+...+ ..+...+..+...+..+...+.. +..
T Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 468 (1179)
T TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222222222222 22222111 11112222222222222111111 110
Q ss_pred hcCCc---ccc-------CC--cccH----------H-HHHHHHHhhcCCccCCCccccccceeccCCCchHHHHHHHHh
Q 001556 440 HQTNK---VTA-------FG--GDRV----------I-SLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIG 496 (1054)
Q Consensus 440 ~~~~~---~~~-------~~--~~~~----------~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 496 (1054)
..... +.. +. ...+ . .+...+.. ...+ .+++|....++.+ + +.|..++...+|
T Consensus 469 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~v~~~i~v-~~~~-~~~~g~~~~li~~-~-~~~~~a~~~~~g 544 (1179)
T TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGL-SGILGVLSELISV-D-EGYEAAIEAALG 544 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhc-cccc-CCCccchhceeee-C-hhHHHHHHHHHH
Confidence 00000 000 00 0000 0 00011110 1111 2345555555555 3 688889988888
Q ss_pred cccceeeecChhhHHHHHHHHHHhccCCcceEEEecCCCCC-CCCC-CCCCC--CCCccchhceecCchhHHHHhhccCC
Q 001556 497 RLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRL-SLPH-HMLPH--TKHPTTLSVLQSDNPTVINVLVDMGS 572 (1054)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~l~~~~~ 572 (1054)
..+..+++.+...+..+...+.....+..+|++++...... .... ..++. +....+.+....+ +.+..+.. ..
T Consensus 545 ~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~~~~~--~~ 621 (1179)
T TIGR02168 545 GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFD-PKLRKALS--YL 621 (1179)
T ss_pred HHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhccc-HhHHHHHH--HH
Confidence 87766788777666555555554445556666554332110 0000 00000 1111111111111 11111110 00
Q ss_pred ccEEEEecChHHHHHHhhhcCCCCcceeEcccCCeeeecCCccccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH
Q 001556 573 AERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQ 652 (1054)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 652 (1054)
.+...++..++.+........ ..+.+++++|..+..+|...++... ....+..+..++..++..+..+...+.
T Consensus 622 ~~~~~ivt~l~~a~~~~~~~~--~~g~~v~~~G~~~~~gg~~~~~~~~-----~~~~~~~l~~e~~~l~~~~~~l~~~l~ 694 (1179)
T TIGR02168 622 LGGVLVVDDLDNALELAKKLR--PGYRIVTLDGDLVRPGGVITGGSAK-----TNSSILERRREIEELEEKIEELEEKIA 694 (1179)
T ss_pred hCCceEeCCHHHHHHHHHHcC--CCceEEecCCEEEcCCceEecCccc-----cccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 112234555555555543321 1236666666544322221111100 111222444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhcCC--CCCCcchHHHHHHHHHHH
Q 001556 653 QCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKE-------LAFQDVKNSFAADAG--PPSASAVDEISQEISNIQ 723 (1054)
Q Consensus 653 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-------~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~l~ 723 (1054)
.+...+..+...+..+..++..+...+..+...+..+. ..+..+..++..... ..+...+..+..++..+.
T Consensus 695 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~ 774 (1179)
T TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444444333333333222222222222 222222222111000 001111111111122221
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHhH----
Q 001556 724 EEIQEKEII-------LEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEA-------AEKELMEIEKNLQTS---- 785 (1054)
Q Consensus 724 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-------l~~~l~~~~~~~~~~---- 785 (1054)
..+..+... +..+...+..+...+..+..++..+...+......+.. +..++..+...+..+
T Consensus 775 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~ 854 (1179)
T TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 11111222222222222222222222222222222222 222222222222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--------------HhhC------------
Q 001556 786 ---ESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRK-------A--------------SVIC------------ 829 (1054)
Q Consensus 786 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~--------------~~~~------------ 829 (1054)
...+..++..+ ..+...+..+...+..+...+..+... + ....
T Consensus 855 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 933 (1179)
T TIGR02168 855 ESLAAEIEELEELI-EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933 (1179)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 111111111111111111111110000 0 0000
Q ss_pred --C-----hhhhh--------hcCCC---CCCCHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001556 830 --P-----ESEIE--------ALGGW---DGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTY 891 (1054)
Q Consensus 830 --~-----~~~~~--------~~~~~---~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 891 (1054)
. ..... ..... ....+..+...+..+...+.. +.........+|+.+..++.++...+
T Consensus 934 l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lg~aiee----~~~~~~~a~er~~~l~~q~~dL~~~~ 1009 (1179)
T TIGR02168 934 LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE----LGPVNLAAIEEYEELKERYDFLTAQK 1009 (1179)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHhhccccccCHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 00000 012233444444444443332 22222234488999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCceeEEeecccc----eEEEEEecCCCCCCCccc
Q 001556 892 QAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKK--GISGKININYEEK----TLSIEVKMPQDASSSNVR 965 (1054)
Q Consensus 892 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~--~~~g~~~~~~~~~----~~~i~v~~~~~~~~~~~~ 965 (1054)
..+...|..+...+...+......|..++..|+..|..+|+.+ |+.+++.|+..++ ++.+.+.+ ++....
T Consensus 1010 ~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 1085 (1179)
T TIGR02168 1010 EDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEAGIEIFAQP----PGKKNQ 1085 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccccCceEEEeC----CCCccc
Confidence 9999999999888888875556777777777777777777765 5555666653333 44455554 555556
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.+..||||++.+++||++||++.+.|+||+||||||++||+.++..+...|..++ .+.|||||||++..+..++..+.
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~--~~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS--KNTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc--cCCEEEEEEcChhHHHHhhhHee
Confidence 7889999999999999999999999999999999999999999999888888876 56899999999864433333345
Q ss_pred EE
Q 001556 1046 KQ 1047 (1054)
Q Consensus 1046 v~ 1047 (1054)
|.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 54
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=1e-47 Score=461.72 Aligned_cols=142 Identities=27% Similarity=0.406 Sum_probs=108.6
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEec
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~ 99 (1054)
|+|.+|.|.||++|.+.+|+|+||+|+|+||||||||||++||+|||||.++. ...+.++++.|...+.|.++|.++
T Consensus 1 M~i~~l~l~nf~~~~~~~~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~---~~~~~~~~~~~~~~~~v~~~f~~~ 77 (880)
T PRK02224 1 MRFDRVRLENFKCYADADLRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKAL---DDTLDDVITIGAEEAEIELWFEHA 77 (880)
T ss_pred CeEEEEEEECcccccceEEecCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc---cccHHHHHhCCCCcEEEEEEEEEC
Confidence 89999999999999999999999999999999999999999999999998753 235678899999999999999986
Q ss_pred CcccccccccCCceEEEEEee-CCC----CeEEEEcCCCCcccccHHHHHHHH-HhcCC--CCCCCceeechhhhhhhhc
Q 001556 100 GEDAFKPEIFGDSIIIERRIT-EST----STTVLKDHQGKRVASRKQELLELI-DHFNI--DVENPCVIMSQDKSREFLH 171 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~----~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~q~~~~~~l~ 171 (1054)
|..|.|.|.+. .++ ..+.+.+ |.........+...+ ..+|+ ..+..++|++||.+..|+.
T Consensus 78 ----------~~~~~i~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~ 145 (880)
T PRK02224 78 ----------GGEYHIERRVRLSGDRATTAKCVLET--PEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLIN 145 (880)
T ss_pred ----------CEEEEEEEEEecCCCCcccceeEEeC--CCccccChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHc
Confidence 45699999986 332 2344443 222222233333322 23344 3455678999999999998
Q ss_pred CCChh
Q 001556 172 SGNDK 176 (1054)
Q Consensus 172 ~~~~~ 176 (1054)
..|..
T Consensus 146 ~~p~~ 150 (880)
T PRK02224 146 ATPSD 150 (880)
T ss_pred CCHHH
Confidence 76654
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=436.94 Aligned_cols=141 Identities=24% Similarity=0.357 Sum_probs=109.4
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEec
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~ 99 (1054)
|+|.+|.|.||++|.+.+|+|+||+|+|+||||||||||++||.|||||..+...++....+|++.|...+.|.++|..+
T Consensus 1 m~i~~l~i~nf~~~~~~~i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~ 80 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSVVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGSGTEIELKFEKN 80 (880)
T ss_pred CeeEEEEEeCccCccCceEecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCCCEEEEEEEEEC
Confidence 89999999999999888999999999999999999999999999999986544445555678999999999999999876
Q ss_pred CcccccccccCCceEEEEEeeCCCCeEEEEcCCCC-cccccHHHHHHHHHh-cCCCCCCCceeechhhhhhhhcC
Q 001556 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGK-RVASRKQELLELIDH-FNIDVENPCVIMSQDKSREFLHS 172 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~ 172 (1054)
|..|+|.|.+..+.+.+.+. +|. .+......+...+.. ++.+.+..++|++||.+.+|+..
T Consensus 81 ----------~~~~~i~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~~ 143 (880)
T PRK03918 81 ----------GRKYRIVRSFNRGESYLKYL--DGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILES 143 (880)
T ss_pred ----------CeEEEEEEEEcCCceEEEEC--CCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhcC
Confidence 46799999998544433332 342 222233455444433 45555667789999999999864
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=4e-42 Score=412.07 Aligned_cols=142 Identities=28% Similarity=0.448 Sum_probs=112.0
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEec
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~ 99 (1054)
|+|.+|.|.||++|+..+|+|+||+|+|+||||||||||++||+|||||.++ +....++++.|...+.|+++|..+
T Consensus 1 M~i~~l~l~NF~s~~~~~i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~----~~~~~~~i~~~~~~~~V~l~f~~~ 76 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSEIEFDTGINIITGKNGAGKSSIVDAIRFALFTDKR----TEKIEDMIKKGKNNLEVELEFRIG 76 (895)
T ss_pred CeEEEEEEeCccCCCCceEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc----cccHHHHhhCCCCeEEEEEEEEEC
Confidence 8999999999999999999999999999999999999999999999998753 234588899999999999999876
Q ss_pred CcccccccccCCceEEEEEee-CCCC---eEEEEcCCCCcccccHHHHHHHHH--hcCC--CCCCCceeechhhhhhhhc
Q 001556 100 GEDAFKPEIFGDSIIIERRIT-ESTS---TTVLKDHQGKRVASRKQELLELID--HFNI--DVENPCVIMSQDKSREFLH 171 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~---~~~~~~~~g~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~q~~~~~~l~ 171 (1054)
|..|+|.|.+. .+++ ...+. .+|.+++....++..++. .+|+ +.+.+++|++||.+..|+.
T Consensus 77 ----------g~~y~i~R~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~ 145 (895)
T PRK01156 77 ----------GHVYQIRRSIERRGKGSRREAYIK-KDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLIS 145 (895)
T ss_pred ----------CEEEEEEEEEecCCCCCCceEEEe-cCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHh
Confidence 46799999996 2221 22222 267766655567777664 3444 3345678999999999997
Q ss_pred CCChh
Q 001556 172 SGNDK 176 (1054)
Q Consensus 172 ~~~~~ 176 (1054)
++|..
T Consensus 146 ~~~~~ 150 (895)
T PRK01156 146 GDPAQ 150 (895)
T ss_pred CCHHH
Confidence 66543
No 13
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-42 Score=406.08 Aligned_cols=146 Identities=30% Similarity=0.448 Sum_probs=117.1
Q ss_pred ceEeEEEEEecccccceEEE--eCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEE
Q 001556 20 GTITRVRLENFMCHSSLQIE--LGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~--f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~ 97 (1054)
|+|.+|.|.||+||.+.+|. |++|+|+|+||||||||||||||+|||||..+..+ ..+..++++.|...+.|.++|.
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~~~~V~l~F~ 79 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEKSASVELEFE 79 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCccEEEEEEEE
Confidence 89999999999999988888 99999999999999999999999999999998644 5567899999999999999999
Q ss_pred ecCcccccccccCCceEEEEEeeCCCC----eEEEEcCCCCcccccHHHHHHHHH-hcCC--CCCCCceeechhhhhhhh
Q 001556 98 NRGEDAFKPEIFGDSIIIERRITESTS----TTVLKDHQGKRVASRKQELLELID-HFNI--DVENPCVIMSQDKSREFL 170 (1054)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~q~~~~~~l 170 (1054)
++ |..|.|.|.+..+++ ...+...+|..+.....++...+. .+|+ +.+..++|+|||.+..|+
T Consensus 80 ~~----------g~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl 149 (908)
T COG0419 80 VN----------GKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFL 149 (908)
T ss_pred EC----------CEEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHH
Confidence 76 567999999873322 122334466666544456665444 3454 444568999999999999
Q ss_pred cCCChh
Q 001556 171 HSGNDK 176 (1054)
Q Consensus 171 ~~~~~~ 176 (1054)
.+.+..
T Consensus 150 ~~~~~e 155 (908)
T COG0419 150 KSKPKE 155 (908)
T ss_pred hcCcHH
Confidence 988764
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.4e-36 Score=367.02 Aligned_cols=139 Identities=17% Similarity=0.292 Sum_probs=95.4
Q ss_pred eEeEEEEEeccccc-----ceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhh------cCCce
Q 001556 21 TITRVRLENFMCHS-----SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK------TGCSY 89 (1054)
Q Consensus 21 ~i~~i~l~nf~~~~-----~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~------~g~~~ 89 (1054)
+|.+|.|.||+||+ .++|+|++|+++|+||||||||||++||.|||||..++..++. .+|+ .+...
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~~~~~~~~~ 78 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPKVAQETDVR 78 (1311)
T ss_pred ccceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCCcCccHhhh
Confidence 58999999999995 3689999999999999999999999999999998765432332 2332 22346
Q ss_pred EEEEEEEEecCcccccccccCCceEEEEEee--CC-C-CeE------EEEcCCCCccc--ccHHHHH-HHHHhcCCC--C
Q 001556 90 AMVEVELKNRGEDAFKPEIFGDSIIIERRIT--ES-T-STT------VLKDHQGKRVA--SRKQELL-ELIDHFNID--V 154 (1054)
Q Consensus 90 ~~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~--~~-~-~~~------~~~~~~g~~~~--~~~~~~~-~~~~~~~~~--~ 154 (1054)
+.|.++|.+. .|..|+|.|.+. .+ + ..+ .....+|..++ ....++. .+...+|++ .
T Consensus 79 a~V~l~F~~~---------~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~ 149 (1311)
T TIGR00606 79 AQIRLQFRDV---------NGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAV 149 (1311)
T ss_pred heeEEEEEcC---------CCCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCHHH
Confidence 8999999643 256789999873 11 1 110 11112465433 2334554 345556665 5
Q ss_pred CCCceeechhhhhhhhc
Q 001556 155 ENPCVIMSQDKSREFLH 171 (1054)
Q Consensus 155 ~~~~~~~~q~~~~~~l~ 171 (1054)
+.+++|++||.+.+++.
T Consensus 150 f~~vi~~~Qge~~~~~~ 166 (1311)
T TIGR00606 150 LNNVIFCHQEDSNWPLS 166 (1311)
T ss_pred HhhceeeCCcccccccC
Confidence 56788999999976654
No 15
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=1.1e-33 Score=336.91 Aligned_cols=147 Identities=21% Similarity=0.305 Sum_probs=107.4
Q ss_pred ceEeEEEEEecccc-cceEEEeC------CceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccc-cchhHhhhcCCceEE
Q 001556 20 GTITRVRLENFMCH-SSLQIELG------EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRA-ATLKDFIKTGCSYAM 91 (1054)
Q Consensus 20 m~i~~i~l~nf~~~-~~~~i~f~------~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~-~~~~~~i~~g~~~~~ 91 (1054)
|+|.+|.+.||++| +..+|+|. .|+++|+||||||||||+|||+|+|||.++...+. ..+.+++..|...++
T Consensus 1 Mk~~~l~~~nf~s~~~~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~ 80 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECL 80 (1047)
T ss_pred CcceEEEeecceeEcCCceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceE
Confidence 89999999999999 56789885 58999999999999999999999999988764333 346888999999999
Q ss_pred EEEEEEecCcccccccccCCceEEEEEee-----CCC----CeEEEE-cCCCCcccccHHHHHHH-HHhcC--CCCCCCc
Q 001556 92 VEVELKNRGEDAFKPEIFGDSIIIERRIT-----EST----STTVLK-DHQGKRVASRKQELLEL-IDHFN--IDVENPC 158 (1054)
Q Consensus 92 v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-----~~~----~~~~~~-~~~g~~~~~~~~~~~~~-~~~~~--~~~~~~~ 158 (1054)
|+|+|..+ |..|.|.|... +++ ..+.+. ..+|..+..+..++... ...+| .+.|..+
T Consensus 81 v~~~F~~~----------~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~ 150 (1047)
T PRK10246 81 AEVEFEVK----------GEAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRS 150 (1047)
T ss_pred EEEEEEEC----------CeEEEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhh
Confidence 99999876 34577776442 111 122222 12454444344454442 22334 4445568
Q ss_pred eeechhhhhhhhcCCChh
Q 001556 159 VIMSQDKSREFLHSGNDK 176 (1054)
Q Consensus 159 ~~~~q~~~~~~l~~~~~~ 176 (1054)
+++|||.+..|+.+.+..
T Consensus 151 v~l~QG~f~~fl~a~~~e 168 (1047)
T PRK10246 151 MLLSQGQFAAFLNAKPKE 168 (1047)
T ss_pred eeeccccHHHHHhCChHH
Confidence 999999999999987764
No 16
>PRK04863 mukB cell division protein MukB; Provisional
Probab=100.00 E-value=1.6e-33 Score=334.82 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=74.2
Q ss_pred EEeecccceEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHHHH---hhhhcCCCceeechhhh---hcchhhH--HH
Q 001556 940 ININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALA---LHEMTEAPFRAMDEFDV---FMDAISR--KI 1011 (1054)
Q Consensus 940 ~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~~a---l~~~~~~p~~v~DE~~~---~lD~~~~--~~ 1011 (1054)
..+|+.+| +.+.|....++.+....++..||||||+.++++|++| .|..+++|+++.|++++ +||..++ ..
T Consensus 1337 ~~lDyR~~-~~f~~~~~~g~~~~~~~~~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea~r~D~~ 1415 (1486)
T PRK04863 1337 ELLDYRNY-LELEVEVNRGADGWLRAESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAK 1415 (1486)
T ss_pred cccccccc-eEEEEEEecCCcceeecCCCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHhhcCCHH
Confidence 33666654 4566654434445555567899999999999999998 66666777666666666 6665555 45
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEEe
Q 001556 1012 SLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1048 (1054)
Q Consensus 1012 ~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1048 (1054)
....++++++.-++|+||+||..++.++. ...++.|
T Consensus 1416 ~~~~~~~l~~~~~~q~i~~tP~~~~~~~g-~~~~l~r 1451 (1486)
T PRK04863 1416 SIATLFELCERLDMQLLIAAPENISPEKG-TTYKLVR 1451 (1486)
T ss_pred HHHHHHHHHHHcCCcEEEechhhccCCCC-cceeeee
Confidence 56777777767899999999999877654 4444444
No 17
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-32 Score=331.59 Aligned_cols=147 Identities=20% Similarity=0.320 Sum_probs=105.8
Q ss_pred ceEeEEEEEecccccc-eEEEeCC--ceEEEEcCCCCchHHHHHHHHHHhcCCcCCccccc-chhHhhhcCCceEEEEEE
Q 001556 20 GTITRVRLENFMCHSS-LQIELGE--WVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA-TLKDFIKTGCSYAMVEVE 95 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~-~~i~f~~--~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~-~~~~~i~~g~~~~~v~l~ 95 (1054)
|+|.+|+|.||++|.+ .+|+|.+ |+++|+||||||||||+|||+|||||.++..++.. ...++...+...|.|+|+
T Consensus 1 M~~~~L~l~nf~s~~~~~~idF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 80 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELE 80 (1042)
T ss_pred CeeeEEEEeCeeccCCCceeeecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEE
Confidence 8999999999999964 5899988 99999999999999999999999999877533322 334555566678899999
Q ss_pred EEecCcccccccccCCceEEEEEee----C--CCCeE---EE-EcCCCCcccccHHHHHHHHH-hcCCCCCC--Cceeec
Q 001556 96 LKNRGEDAFKPEIFGDSIIIERRIT----E--STSTT---VL-KDHQGKRVASRKQELLELID-HFNIDVEN--PCVIMS 162 (1054)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~R~~~----~--~~~~~---~~-~~~~g~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ 162 (1054)
|..+| ..|.|.|.+. . +...+ .+ ...+|..+..+..++...+. .+|++.+. .+++++
T Consensus 81 F~~~g----------~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l~ 150 (1042)
T TIGR00618 81 FSLGT----------KIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLP 150 (1042)
T ss_pred EEECC----------EEEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheeec
Confidence 98763 4567666553 1 11111 11 11245555545566666444 45665544 468999
Q ss_pred hhhhhhhhcCCChh
Q 001556 163 QDKSREFLHSGNDK 176 (1054)
Q Consensus 163 q~~~~~~l~~~~~~ 176 (1054)
||.+..|+.+++..
T Consensus 151 Qg~~~~fl~a~~~e 164 (1042)
T TIGR00618 151 QGEFAQFLKAKSKE 164 (1042)
T ss_pred ccchHHHHhCCHHH
Confidence 99999999987654
No 18
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-29 Score=265.91 Aligned_cols=169 Identities=23% Similarity=0.264 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCce-eEEeecc
Q 001556 867 SESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISG-KININYE 945 (1054)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g-~~~~~~~ 945 (1054)
......+..++..+..++.+.......+.-...-+.+.+....+ ..+..+....+.+|..+.. | +-.+.+.
T Consensus 810 g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke---~rlP~vi~~A~~~F~hlT~-----G~Yt~Iy~~ 881 (984)
T COG4717 810 GGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKE---RRLPAVIQEASEFFMHLTD-----GRYTGIYTQ 881 (984)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHhhccC-----Cceeeeecc
Confidence 34455566666666666666666666666655444444433222 1455667777888887654 3 4445555
Q ss_pred cceEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHHHHhhhh--cCCCce-eechhhhhcchhhHHHHHHHHHHHHhc
Q 001556 946 EKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM--TEAPFR-AMDEFDVFMDAISRKISLDTLVDFALA 1022 (1054)
Q Consensus 946 ~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~~al~~~--~~~p~~-v~DE~~~~lD~~~~~~~~~~l~~~~~~ 1022 (1054)
.+.-.|.|... .|.. ..+..||-|.+..+.+||+||+... ...||| |+|++|++||+.+...++..|.+++
T Consensus 882 e~~d~I~V~~~---~G~~-~~~~ELSqgT~EQLYlAlRfali~~~~~~~~LP~i~DD~fVhFD~~R~~r~~e~l~dls-- 955 (984)
T COG4717 882 EDKDSIIVEHR---AGGS-KLAEELSQGTKEQLYLALRFALIHEVRTREPLPFIADDIFVHFDDERAKRMLELLADLS-- 955 (984)
T ss_pred cCCceeEEEec---cccc-ccHHHHhhhHHHHHHHHHHHHHHhhhccCCCCCeeeccchhccCHHHHHHHHHHHHHhc--
Confidence 54456888764 3333 3566799999999999999997753 233444 5999999999999999999999987
Q ss_pred CCcEEEEeccCCCC--CCCCCCCceEEec
Q 001556 1023 QGSQWIFITPHDVG--LVKQGERIKKQQM 1049 (1054)
Q Consensus 1023 ~~~Q~i~iT~~~~~--~~~~~~~~~v~~~ 1049 (1054)
.+.|||+||||+-+ ....++.|.++++
T Consensus 956 ~~~QviYFTCHe~~~d~~~s~~vI~l~~~ 984 (984)
T COG4717 956 EGNQVIYFTCHEHTCDAFPSSEVITLHRL 984 (984)
T ss_pred cCCeEEEEEechhhhcccccccceeeccC
Confidence 89999999999976 4555566777653
No 19
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=100.00 E-value=7.7e-26 Score=275.02 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=65.5
Q ss_pred CCCCCCCChhhHHHHHHHHHh--hhh------cCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALAL--HEM------TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al--~~~------~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
.+..|||||+.+++...+||- +.| ...++++|||||+++|+.+...++++|.++ +.|||++|+..-..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~Wg~ 1319 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSEREWGC 1319 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccchhcc
Confidence 368899999999976555552 222 345578899999999999998888877774 89999999998766
Q ss_pred CCCCCCceEEecCCCC
Q 001556 1038 VKQGERIKKQQMAAPR 1053 (1054)
Q Consensus 1038 ~~~~~~~~v~~~~~~~ 1053 (1054)
...=+++-|+.|-.|.
T Consensus 1320 Y~tVp~laI~el~R~~ 1335 (1353)
T TIGR02680 1320 YPEVPGLAICQLLRPD 1335 (1353)
T ss_pred ccCCCcceEEEEecCC
Confidence 6666778888887664
No 20
>PF13514 AAA_27: AAA domain
Probab=100.00 E-value=2.5e-27 Score=287.51 Aligned_cols=127 Identities=20% Similarity=0.284 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCceeEEeecccceEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHHHHhhhhc---C
Q 001556 915 NATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMT---E 991 (1054)
Q Consensus 915 ~~~~~~~~~~~~f~~l~~~~~~~g~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~~al~~~~---~ 991 (1054)
....+...++.+|..+.. |--..+.++++.++..+.+.. ..+...++..||+|.+..+.|||+||+.... +
T Consensus 977 ~~p~vl~~As~~f~~LT~--G~Y~~l~~d~d~~~~~l~~~~----~~G~~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~ 1050 (1111)
T PF13514_consen 977 RQPPVLARASEYFSRLTG--GRYSRLRVDEDGDKPVLVVVR----ADGERVPVEELSRGTRDQLYLALRLALAELLAEQG 1050 (1111)
T ss_pred hhHHHHHHHHHHHHHHhC--CCCceeeeccccCcccceEEe----cCCeEeeHHHhCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456677777788887655 211235566644333344443 2334458899999999999999999987643 4
Q ss_pred CCce-eechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC----CCCCCceEEec
Q 001556 992 APFR-AMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV----KQGERIKKQQM 1049 (1054)
Q Consensus 992 ~p~~-v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~----~~~~~~~v~~~ 1049 (1054)
.|+| |+||+|+++|+.+...++..|.+++ ..+||||||||+-.+. .+.+.+.||.|
T Consensus 1051 ~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls--~~~QVI~FTch~~l~~~a~~~~~~~v~v~~L 1111 (1111)
T PF13514_consen 1051 EPLPFILDDIFVNFDDERARAALELLAELS--RRRQVIYFTCHEHLVELAREVFGDRVNVHEL 1111 (1111)
T ss_pred CCCcEEeeCCccccCHHHHHHHHHHHHHhc--cCCeEEEEeccHHHHHHHHHhcCCCCceeeC
Confidence 4443 5999999999999999999999998 7899999999994322 15566888875
No 21
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=100.00 E-value=3e-26 Score=256.99 Aligned_cols=145 Identities=19% Similarity=0.278 Sum_probs=105.2
Q ss_pred CceEeEEEEEecccccc---eEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCC------ce
Q 001556 19 AGTITRVRLENFMCHSS---LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SY 89 (1054)
Q Consensus 19 ~m~i~~i~l~nf~~~~~---~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~------~~ 89 (1054)
|-.|.++.|.|.+||++ .+|.|..++|+|+||||+|||||++++.|+..|..|++.++ ..||+.+. ..
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpkIage~ev~ 77 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPKVAGETEVR 77 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCccccchhhhh
Confidence 45688999999999954 58899888999999999999999999999988877765555 45665443 35
Q ss_pred EEEEEEEEecCcccccccccCCceEEEEEee--CC----------CCeEEEEcCCCCcccccHHHHHH-HHHhcCCC--C
Q 001556 90 AMVEVELKNRGEDAFKPEIFGDSIIIERRIT--ES----------TSTTVLKDHQGKRVASRKQELLE-LIDHFNID--V 154 (1054)
Q Consensus 90 ~~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~--~~----------~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~--~ 154 (1054)
|.|.+.|.+. .|..+++.|++. .+ +.-+.+++..+..++.+..+++. ++.++|+. +
T Consensus 78 AqvkL~f~~~---------~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAI 148 (1294)
T KOG0962|consen 78 AQVKLAFTDV---------NGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAI 148 (1294)
T ss_pred heeeeeeecC---------CCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHH
Confidence 8999999986 367889999886 22 12234443223333344456654 55566664 3
Q ss_pred CCCceeechhhhhhhhcCCCh
Q 001556 155 ENPCVIMSQDKSREFLHSGND 175 (1054)
Q Consensus 155 ~~~~~~~~q~~~~~~l~~~~~ 175 (1054)
.+.+.|++|+.-.|.+..+..
T Consensus 149 l~~VIFcHQEdS~WPLsEp~~ 169 (1294)
T KOG0962|consen 149 LENVIFCHQEDSTWPLSEPKN 169 (1294)
T ss_pred HhhhheecccCCCCCCCChHH
Confidence 367999999999999886554
No 22
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=100.00 E-value=1.4e-26 Score=264.09 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=98.0
Q ss_pred ceEeEEEEEeccccc-ceEEEeC----CceEEEEcCCCCchHHHHHHHHHHhcCCcCC-ccccc-chh----Hhhhc---
Q 001556 20 GTITRVRLENFMCHS-SLQIELG----EWVNFITGQNGSGKSAILTALCIAFGCRAKG-TQRAA-TLK----DFIKT--- 85 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~-~~~i~f~----~~~~~I~G~NGsGKStil~ai~~~lg~~~~~-~~r~~-~~~----~~i~~--- 85 (1054)
|+|++|.|.||++|. ...|+|. +++++|+||||+||||+++||.|||||..+. ..++. +.. ++++.
T Consensus 1 M~i~~l~l~nf~~~~~~~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~~ 80 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQAG 80 (650)
T ss_pred CcccEEEEeceEEEcCCceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccCC
Confidence 899999999999995 4577775 3599999999999999999999999997653 22332 222 33333
Q ss_pred CCceEEEEEEEEecCcccccccccCCceEEEEEee-C---CCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceee
Q 001556 86 GCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-E---STSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIM 161 (1054)
Q Consensus 86 g~~~~~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1054)
+...+.|+++|.+.+.+ ....|+|.|.|. + ....+.+.. +|.....-...+.++++.+-+....++|||
T Consensus 81 ~~~~~~V~l~f~~~~~~------~~~~y~i~R~w~~~~k~~~~~l~v~~-~~~~~~~~~~~~~~~i~~ilp~~~~~~FfF 153 (650)
T TIGR03185 81 KTNPASITLTFSVVEGG------KRHEYTLVRSWHINNKDVKEKLTVYK-DDEEDDSLNDIWDEFINELLPLELADLFFF 153 (650)
T ss_pred CCCCeEEEEEEEEccCC------ceEEEEEEEEecCCCCCCCCcEEEEE-CCcccchhhHHHHHHHHHhCCHhHHHHhcc
Confidence 23467999999865321 124689999986 2 123333332 342211112355667777655555678999
Q ss_pred chhhhhhhhcCC
Q 001556 162 SQDKSREFLHSG 173 (1054)
Q Consensus 162 ~q~~~~~~l~~~ 173 (1054)
+++.+..+...+
T Consensus 154 DGE~I~~la~~~ 165 (650)
T TIGR03185 154 DGEKIEALANPD 165 (650)
T ss_pred cHHHHHHHhccc
Confidence 988888876543
No 23
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.7e-23 Score=212.58 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=69.2
Q ss_pred CceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcC--------CcccccchhHhhh------
Q 001556 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAK--------GTQRAATLKDFIK------ 84 (1054)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~--------~~~r~~~~~~~i~------ 84 (1054)
-.++.+|++.||+.|....|+...+-.+++|..||||||++|||..+|-.... ...+..++..||.
T Consensus 14 ~FRL~~iqliNWGTF~T~~~~~T~~G~LvTG~~GSGKSTLIDAITavLlP~~kl~~N~AA~A~t~~RSL~tYi~G~~raq 93 (1104)
T COG4913 14 QFRLSRIQLINWGTFHTVDIPVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSLVTYIRGAWRAQ 93 (1104)
T ss_pred ceeeeEEEEeeccccceeeeeEeccceEEecCCCCCchhHHHHHHHHhcccchhhcccccccCCchhHHHHHHHHHHhhc
Confidence 47899999999999997777776666899999999999999999987742211 0112235566662
Q ss_pred --------------cCCceEEEEEEEEecCcccccccccCCceEEEEEee
Q 001556 85 --------------TGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT 120 (1054)
Q Consensus 85 --------------~g~~~~~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~ 120 (1054)
...+|..|.++|.|+ +|..+++.-.|.
T Consensus 94 ~~~~~~~~~~~~LR~~a~YSlv~~~~~NG---------~~~~~TL~~iF~ 134 (1104)
T COG4913 94 EDPLQDQIVSTYLRPRATYSLVGLTYSNG---------EGVEHTLVAIFY 134 (1104)
T ss_pred cCccccceeeeeeccccceEEEEEEeecC---------CCeeEEEEEEEE
Confidence 334578888999984 567788888887
No 24
>PRK10869 recombination and repair protein; Provisional
Probab=99.97 E-value=1.5e-27 Score=262.04 Aligned_cols=176 Identities=14% Similarity=0.133 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCce-e--EEe
Q 001556 869 SIEDLRMLYEEKEHKILRKQ---QTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISG-K--INI 942 (1054)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~l~---~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g-~--~~~ 942 (1054)
.++++....+.+..++..+. ..+..+...+..+...+......+...+......|.......+..+|+.+ . +.+
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m~~a~f~v~~ 397 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSMPHGKFTIDV 397 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence 33444444444444433332 23444455555555555555555666666667777777777777777644 3 333
Q ss_pred ecc-----c---ceEEEEEecCCCCCCCcccCC-CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHH
Q 001556 943 NYE-----E---KTLSIEVKMPQDASSSNVRDT-RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISL 1013 (1054)
Q Consensus 943 ~~~-----~---~~~~i~v~~~~~~~~~~~~~~-~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~ 1013 (1054)
... . +.+.+.+.++ +|.++.|+ ..+||||+++++||+.+++....++|++||||||+|+|+.....++
T Consensus 398 ~~~~~~~~~~G~d~veF~~~~n---~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~ 474 (553)
T PRK10869 398 KFDPEHLSADGADRIEFRVTTN---PGQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG 474 (553)
T ss_pred ecCCCCCCCCCceEEEEEEecC---CCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 211 1 3355666665 45555554 4689999999999999999888889999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEEec
Q 001556 1014 DTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQM 1049 (1054)
Q Consensus 1014 ~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~ 1049 (1054)
..|.+++ .++|||||||.+.....++.++.|.+-
T Consensus 475 ~~l~~l~--~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 475 KLLRQLG--ESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred HHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 9999886 679999999999644445555666653
No 25
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.9e-25 Score=231.34 Aligned_cols=147 Identities=12% Similarity=0.091 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCce---eEEeecc--------cceEEEEEecCCCCCCCcccCCCC
Q 001556 901 CREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISG---KININYE--------EKTLSIEVKMPQDASSSNVRDTRG 969 (1054)
Q Consensus 901 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g---~~~~~~~--------~~~~~i~v~~~~~~~~~~~~~~~~ 969 (1054)
+...+...-..+...+......+.......++.+++.+ .+.+.+. .+.+.+.|..+++.|.+++..+.
T Consensus 354 l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~a~F~ve~~~~~~~~t~~G~d~VeF~istNpG~~~~PL~KvA- 432 (557)
T COG0497 354 LKAELLEAAEALSAIRKKAAKELEKEVTAELKALAMEKARFTVELKPLEESPTADGADKVEFLISTNPGEPLKPLAKVA- 432 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCcCCcceEEEEEeCCCCCCCccHHhhc-
Confidence 33333333333444444444444444444455554433 3334331 23566888887666666664455
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEEec
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQM 1049 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~ 1049 (1054)
||||-|+++|||..++....+.|.+||||||+|+.+.-+..+...|.+++ .++|||||||.|-....++.++.|.|-
T Consensus 433 -SGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls--~~~QVl~VTHlPQVAa~ad~H~~V~K~ 509 (557)
T COG0497 433 -SGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLS--EHHQVLCVTHLPQVAAMADTHFLVEKE 509 (557)
T ss_pred -chhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHh--cCceEEEEecHHHHHhhhcceEEEEEe
Confidence 99999999999999999999999999999999999999999999999998 999999999999888888888988876
Q ss_pred CC
Q 001556 1050 AA 1051 (1054)
Q Consensus 1050 ~~ 1051 (1054)
+.
T Consensus 510 ~~ 511 (557)
T COG0497 510 SE 511 (557)
T ss_pred cC
Confidence 54
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.96 E-value=2.1e-25 Score=255.58 Aligned_cols=142 Identities=18% Similarity=0.291 Sum_probs=103.3
Q ss_pred CceEeEEEEEecccccc--eEEEeC-CceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhh-cCCceEEEEE
Q 001556 19 AGTITRVRLENFMCHSS--LQIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK-TGCSYAMVEV 94 (1054)
Q Consensus 19 ~m~i~~i~l~nf~~~~~--~~i~f~-~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~-~g~~~~~v~l 94 (1054)
||+|++|++.||++|++ ++|+|+ +|+|+|+||||||||||++||+|||||.+... ....+++. .+...+.|++
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~---~~~~~~~~~~~~~~~~v~l 77 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRD---IKKGQLINSINKKDLLVEL 77 (562)
T ss_pred CceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCc---CCHHHhhccCCCCcEEEEE
Confidence 79999999999999965 488998 48999999999999999999999999987542 22244554 3456789999
Q ss_pred EEEecCcccccccccCCceEEEEEeeCCCCeEEEEcCCCCccc--ccHHHHHHHHHh-cCCCCCC--Cceeechhhhhhh
Q 001556 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVA--SRKQELLELIDH-FNIDVEN--PCVIMSQDKSREF 169 (1054)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~-~~~~~~~--~~~~~~q~~~~~~ 169 (1054)
+|..+ |..|.|.|.+.++...++. +|.++. .+..++...+.. +|++... ..++++|+.+..|
T Consensus 78 ~f~~~----------~~~y~i~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f 144 (562)
T PHA02562 78 WFEYG----------EKEYYIKRGIKPNVFEIYC---NGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPF 144 (562)
T ss_pred EEEEC----------CEEEEEEEeccCCeEEEec---CCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhH
Confidence 99876 4679999987643322222 565543 234566665554 4444333 3577999999999
Q ss_pred hcCCChh
Q 001556 170 LHSGNDK 176 (1054)
Q Consensus 170 l~~~~~~ 176 (1054)
+.+.+..
T Consensus 145 ~~~~~~e 151 (562)
T PHA02562 145 MQLSAPA 151 (562)
T ss_pred hcCChHh
Confidence 8876554
No 27
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.94 E-value=2.1e-26 Score=227.64 Aligned_cols=126 Identities=33% Similarity=0.469 Sum_probs=97.4
Q ss_pred eEeEEEEEecccc--cceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhc-----CCceEEEE
Q 001556 21 TITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVE 93 (1054)
Q Consensus 21 ~i~~i~l~nf~~~--~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~-----g~~~~~v~ 93 (1054)
+|.+|+|.||++| ...+++|+|++|+|+||||+|||||++||.||||+.+.+..|.....++|+. ....|.|+
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 5999999999999 5788999999999999999999999999999999988777888888999877 45679999
Q ss_pred EEEEecCcccccccccCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCC
Q 001556 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDV 154 (1054)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 154 (1054)
+.|.+.+.. .......+.|.|.+. .+.+.|++ +|..+. ..++..++...++..
T Consensus 81 ~~~~~~~~~---~~~~~~~~~i~r~~~~~~~~~~~i---n~~~~~--~~~~~~~l~~~~i~~ 134 (220)
T PF02463_consen 81 LIFDNSDEE---FELDKKEIEISRRIDRKGRSEYKI---NGKKVR--LKDLEELLPEVGISP 134 (220)
T ss_dssp EEEECTTEE---SSSSSSEEEEEEEEETTS-EEEEE---TTEEE---HHHHHHHHHCTTTTT
T ss_pred ccccccccc---cccccccccccccccccccccccc---cccccc--ccccccccccccccc
Confidence 999876433 122345689999988 66678888 676664 378888887766554
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.93 E-value=2.4e-16 Score=192.29 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=48.8
Q ss_pred CCCChhhHHHHHHHHHhhhh--cCCCcee---echhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 970 LSGGERSFSTLCFALALHEM--TEAPFRA---MDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~--~~~p~~v---~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
-|-|.-.++-+.|.+|+..+ ...||.| +||+ +-||+.| +..|++++...+-.+|.-+|.+.+
T Consensus 1121 sS~G~syLi~~~~~i~l~~~lr~~~~~~ihwpiDEi-G~L~~~N----v~~l~~~~~~nnI~li~A~P~~~~ 1187 (1201)
T PF12128_consen 1121 SSHGTSYLILCMFFIALTRMLRGDADFRIHWPIDEI-GKLHPNN----VKKLLDMCNSNNISLISAFPNPDS 1187 (1201)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCeEEEeeehhh-ccCChHH----HHHHHHHHHhCCceEEEeCCCCCh
Confidence 39999888888899998764 3457666 9999 7899999 566777776678888888887754
No 29
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.92 E-value=1.4e-15 Score=157.67 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCc-----------eeEEeecccceEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHH
Q 001556 915 NATLLKRQLTWQFNGHLGKKGIS-----------GKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFA 983 (1054)
Q Consensus 915 ~~~~~~~~~~~~f~~l~~~~~~~-----------g~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~ 983 (1054)
.|..-.-.|+..+..+|..+++. |+-.+|+.+ .++++|.++.+..|.--...+.||.||---..++++
T Consensus 1300 LF~~~R~TFSEA~AKLyQRlNP~iDMGQRt~QtiGEELLDYRN-YLeLeVEV~RGaDGWLrAESGALSTGEAIGTGmSIL 1378 (1480)
T COG3096 1300 LFNSNRLTFSEALAKLYQRLNPQIDMGQRTPQTIGEELLDYRN-YLELEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL 1378 (1480)
T ss_pred HHhhccchHHHHHHHHHHhcCccccccccCchhHHHHHHhhhh-hhheeEEEecCCcchhhhhccCcccccccccCchhh
Confidence 44444445566666666654432 222234544 467888877777776666678899999988777766
Q ss_pred HHh---h----------hhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 984 LAL---H----------EMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 984 ~al---~----------~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
+.+ | .+.||.++++||+ +.||+.+ +..|.+++..-.+|.|+-.|..++..+
T Consensus 1379 lMVVQSWEEESRRlRgKDI~PCRLLFLDEA-ARLDaKS----IaTLFELCERLdMQLlIAAPENISPEK 1442 (1480)
T COG3096 1379 VMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKS----IATLFELCERLDMQLIIAAPENISPEK 1442 (1480)
T ss_pred HHHHHHHHHHHHhcccCCCcchhhhhhhhh-hhccchh----HHHHHHHHHHhhhhhhhcccccCCccc
Confidence 643 3 2578889899999 7999977 577777776778999998888876543
No 30
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.91 E-value=1.3e-21 Score=219.01 Aligned_cols=188 Identities=24% Similarity=0.383 Sum_probs=127.1
Q ss_pred eEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEecC
Q 001556 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (1054)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~~ 100 (1054)
+|.+|.|.||++|...+|+|+||+|+|+||||||||+|++||.|+||++.. .++|+.|...+.|++.|.+.+
T Consensus 1 Ml~~l~i~nf~~~~~~~i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~~--------~~~i~~~~~~~~v~~~f~~~~ 72 (563)
T TIGR00634 1 MLTELRINNFALIRVLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQRAG--------ASRVRSGENRAVVEGRFTTES 72 (563)
T ss_pred CceEEEEcceeeeeeeEEecCCCeEEEECCCCCCHHHHHHHHHHHhCcCch--------HHHhcCCCCeEEEEEEEccCC
Confidence 489999999999999999999999999999999999999999999998753 688999999999999998753
Q ss_pred ccc----------ccccccCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCC---Cceeechhhh
Q 001556 101 EDA----------FKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVEN---PCVIMSQDKS 166 (1054)
Q Consensus 101 ~~~----------~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~q~~~ 166 (1054)
... +.++..++.++|+|.+. +|++.|+| ||.+++. ..+.++...+ +++.+ ....+.+...
T Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~i---Ng~~v~~--~~l~~l~~~l-i~i~gQ~~~~~l~~~~~~ 146 (563)
T TIGR00634 73 LDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYL---NGKPVSA--SSLLEFTSEL-LDLHGQHDQQLLFRPDEQ 146 (563)
T ss_pred CchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEE---CCEEccH--HHHHHHhcCe-EEEECchHHHHhcCHHHH
Confidence 211 10011135788999998 78899999 7888854 6777776543 22111 1222333333
Q ss_pred hhhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001556 167 REFLHSGNDKDKFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME 230 (1054)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 230 (1054)
..|++.-.+ +..+...+......+..+...+.++.........+++.++.+++.++
T Consensus 147 ~~lLD~~~~--------~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 147 RQLLDTFAG--------ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHhcC--------chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333332111 12233334444455555555566665555666666666666666555
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.87 E-value=7e-14 Score=171.04 Aligned_cols=169 Identities=19% Similarity=0.256 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001556 195 YNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPR 274 (1054)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1054)
..+..+....+......+..+...+.++..+++.++.......++..+..++...+......++..+..++..+...+..
T Consensus 171 ~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 250 (1163)
T COG1196 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSR 250 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 275 CQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQ 354 (1054)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 354 (1054)
+...+..+...+......+..+...+..+...+..+......+...+..+..++..+.............+...+..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1163)
T COG1196 251 LEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKE 330 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888888888888888888887777766666666
Q ss_pred HHHHHHHHH
Q 001556 355 QVHDIQEQH 363 (1054)
Q Consensus 355 ~~~~~~~~~ 363 (1054)
++......+
T Consensus 331 ~~~~~~~~~ 339 (1163)
T COG1196 331 KIEALKEEL 339 (1163)
T ss_pred HHHHHHHHH
Confidence 665554443
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.86 E-value=3.4e-15 Score=164.72 Aligned_cols=248 Identities=16% Similarity=0.282 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001556 185 QQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLK 264 (1054)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (1054)
..+...+....+.+......+..++.++...+..+..+..--.-.+....+..++.|...--...++......+...+..
T Consensus 217 ~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek 296 (1074)
T KOG0250|consen 217 SEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEK 296 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555444444444444555555555555444444444555555555555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 265 IEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQK 344 (1054)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1054)
+..+++++......+..+...+.+.+.++..+.........++..+...+..+..+..+++..+....+.+......+..
T Consensus 297 ~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~ 376 (1074)
T KOG0250|consen 297 VDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDR 376 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 345 MVNRVKGLEQQV-HDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDY 423 (1054)
Q Consensus 345 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (1054)
+...|..++++. ..+..++. ..+.++..+..+++.++..+..+..++..+...+...+.+....+..+..+...+...
T Consensus 377 l~k~I~~~~~~~~~~~~~~~~-e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 377 LEKQIADLEKQTNNELGSELE-ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 22222221 2233344445555555555555555555555554444444444555555555555555
Q ss_pred HHHHHHHHHH
Q 001556 424 DKKCREIRSE 433 (1054)
Q Consensus 424 ~~~~~~l~~~ 433 (1054)
...+..+...
T Consensus 456 ~~~l~~lk~~ 465 (1074)
T KOG0250|consen 456 SEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHhc
Confidence 5555554443
No 33
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.84 E-value=9e-14 Score=177.63 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001556 198 LNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQA 277 (1054)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (1054)
+......+......+..+.+.+.++..++..++........+..+..++...+......++..+..++..+...+..+..
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 246 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQE 246 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888999999999999999888866666666666766666555555566677777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 278 KIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVH 357 (1054)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 357 (1054)
.+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+......+..+...+..+..++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 326 (1179)
T TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777777777777766666666666666555555555555555554444444444444444444433333
Q ss_pred H
Q 001556 358 D 358 (1054)
Q Consensus 358 ~ 358 (1054)
.
T Consensus 327 ~ 327 (1179)
T TIGR02168 327 E 327 (1179)
T ss_pred H
Confidence 3
No 34
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.83 E-value=2.8e-13 Score=172.18 Aligned_cols=77 Identities=10% Similarity=0.190 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHH----HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 843 STPEQLSAQVNRLNQ----RLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATL 918 (1054)
Q Consensus 843 ~~~~~l~~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 918 (1054)
..+..+..++..+.. .+..+.. +...|..+..+++.+......+...+..+..... ......|..+...|..
T Consensus 958 ~~l~~l~~~i~~l~~vN~~Ai~~~~~-~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~---~~f~~~f~~~~~~f~~ 1033 (1164)
T TIGR02169 958 AELQRVEEEIRALEPVNMLAIQEYEE-VLKRLDELKEKRAKLEEERKAILERIEEYEKKKR---EVFMEAFEAINENFNE 1033 (1164)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 345556665555431 1111111 4556777888888888888888888888876654 3344555555555555
Q ss_pred HHHHH
Q 001556 919 LKRQL 923 (1054)
Q Consensus 919 ~~~~~ 923 (1054)
++..+
T Consensus 1034 ~~~~l 1038 (1164)
T TIGR02169 1034 IFAEL 1038 (1164)
T ss_pred HHHHH
Confidence 54444
No 35
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=9.1e-19 Score=175.92 Aligned_cols=149 Identities=28% Similarity=0.423 Sum_probs=115.6
Q ss_pred ceEeEEEEEecccccceEE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcC----CceEEEE
Q 001556 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTG----CSYAMVE 93 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g----~~~~~v~ 93 (1054)
|+|++|.|.||++|.+.++ +|+|++|+|+||||||||||++||+|+||+......|.....++++.+ ...+.|.
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 7899999999999988876 899999999999999999999999999997654446666666787653 3478999
Q ss_pred EEEEecCccccccc-ccCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhc
Q 001556 94 VELKNRGEDAFKPE-IFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1054)
Q Consensus 94 l~~~~~~~~~~~~~-~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1054)
+.|.+.+...+.+. .....++|.|.+. .....|++ +|... ....+.+++..+++..+++++++.|+++..++.
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~i---n~~~~--~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLI---NGHRA--QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEE---CCEEe--eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 99998643211110 1134689999988 44445555 34333 236888899999998888999999999999987
Q ss_pred CC
Q 001556 172 SG 173 (1054)
Q Consensus 172 ~~ 173 (1054)
..
T Consensus 156 ~~ 157 (251)
T cd03273 156 MG 157 (251)
T ss_pred hH
Confidence 64
No 36
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=3.3e-18 Score=170.85 Aligned_cols=139 Identities=27% Similarity=0.347 Sum_probs=112.3
Q ss_pred EeEEEEEeccccc-ceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCc------eEEEEE
Q 001556 22 ITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (1054)
Q Consensus 22 i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~------~~~v~l 94 (1054)
|++|+|.||++|. .++|+|.+++++|+||||||||||++||+|||++.+.. .|.....++|+.|.. .+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~-~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSH-LRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeeecCCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc-ccccchhhhcccCccccCCCceEEEEE
Confidence 6799999999996 45799999999999999999999999999999876433 466667788887765 789999
Q ss_pred EEEecCcccccccccCCceEEEEEeeCCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhcCCC
Q 001556 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGN 174 (1054)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 174 (1054)
.|.+.+ +....+.|.+..+...|.+ +|+.++ ..++.+++..++++.+.+.+++.|+.+..+..+.|
T Consensus 80 ~f~~~~---------~~~~~~~~~~~~~~~~~~i---ngk~~s--~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 80 VYEDDD---------GEEKTFRRIITGGSSSYRI---NGKVVS--LKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred EEEcCC---------CcEEEEEEEEECCceEEEE---CCEEec--HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 998752 2335555655566667777 566654 46888999999999988888899999999988876
Q ss_pred h
Q 001556 175 D 175 (1054)
Q Consensus 175 ~ 175 (1054)
.
T Consensus 146 ~ 146 (247)
T cd03275 146 P 146 (247)
T ss_pred c
Confidence 4
No 37
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.77 E-value=1.2e-15 Score=171.12 Aligned_cols=198 Identities=15% Similarity=0.174 Sum_probs=151.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 842 GSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQ---TYQAFREKVRACREALDSRWGKFQRNATL 918 (1054)
Q Consensus 842 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 918 (1054)
+..+++++.++..+....++ ....++++...++.+..++..+.. .+..+...+..+...+......+...+..
T Consensus 300 p~~L~ele~RL~~l~~LkrK----yg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRK----YGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777664444 667888888888888888877664 68888888888888888877888888888
Q ss_pred HHHHHHHHHHHhhhhcCCce-eE--Eeeccc-------------ceEEEEEecCCCCCCCcccCC-CCCCCChhhHHHHH
Q 001556 919 LKRQLTWQFNGHLGKKGISG-KI--NINYEE-------------KTLSIEVKMPQDASSSNVRDT-RGLSGGERSFSTLC 981 (1054)
Q Consensus 919 ~~~~~~~~f~~l~~~~~~~g-~~--~~~~~~-------------~~~~i~v~~~~~~~~~~~~~~-~~lSgGErs~~~la 981 (1054)
....|...+...+..+|+.+ .+ .+.... +.+.+.+.++ +|.++.++ ..+||||+++++||
T Consensus 376 ~a~~l~~~v~~~l~~L~m~~~~f~v~~~~~~~~~~~~~~~~~G~d~v~f~~~~n---~g~~~~pl~~~lSgGe~~rv~la 452 (563)
T TIGR00634 376 AAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSAN---TGEPVKPLAKVASGGELSRVMLA 452 (563)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEeecCccccccCCCCCCceEEEEEEecC---CCCCCCChhhhcCHhHHHHHHHH
Confidence 88899999988888888764 33 332111 2356667665 45555555 57999999999999
Q ss_pred HHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEEe
Q 001556 982 FALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1048 (1054)
Q Consensus 982 l~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1048 (1054)
+.+++....++|++||||||+|||+..+..+...|.+++ .+.|||||||++..+..++.++.|++
T Consensus 453 ~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~--~~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 453 LKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS--ERHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred HHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEEChHHHHHhcCeEEEEEE
Confidence 999887666789999999999999999999999999987 68999999999965544444455554
No 38
>PRK14079 recF recombination protein F; Provisional
Probab=99.77 E-value=6.8e-17 Score=168.50 Aligned_cols=124 Identities=22% Similarity=0.291 Sum_probs=96.7
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEec
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~ 99 (1054)
|+|.+|+|.||++|...+++|+||+|+|+||||+|||||++||+|++||. .|.....++|+.|...+.|.++|...
T Consensus 1 M~i~~l~l~nfRn~~~~~l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs----~r~~~~~~lI~~g~~~~~v~~~~~~~ 76 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTLAFPPGVTAVVGENAAGKTNLLEAIYLALTGE----LPNGRLADLVRFGEGEAWVHAEVETG 76 (349)
T ss_pred CEEEEEEEeccCCcccceEEeCCCeEEEECCCCCCHHHHHHHHHHHhcCC----CCCCcHHhheecCCCcEEEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999983 35566789999999999999999765
Q ss_pred CcccccccccCCceEEEEEeeCCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhc
Q 001556 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1054)
+ ..+.+...+..+++.+.+ ||..++ ..++..++ ++++|.|+...-+..
T Consensus 77 ~----------~~~~~~~~~~~~~~~~~i---ng~~~~--~~~l~~~~---------~~v~~~p~d~~li~~ 124 (349)
T PRK14079 77 G----------GLSRLEVGLGPGRRELKL---DGVRVS--LRELARLP---------GAVLIRPEDLELVLG 124 (349)
T ss_pred C----------CeEEEEEEEEcCceEEEE---CCeecC--HHHHHhhh---------cEEEEecCchHhhhC
Confidence 2 234455555545567888 677663 34444433 555667777766554
No 39
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=5.8e-11 Score=131.73 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=51.1
Q ss_pred CCeeeecCCcc-cccccccccc---CccccCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 605 GHKMFSRGSVQ-TILPLNRRLR---TGRLCGSYD------EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQN 674 (1054)
Q Consensus 605 ~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~------~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 674 (1054)
+.+++..|... ..+.+.++.. .+.....+. .....++.++.........+..+...++..+..++..+..
T Consensus 738 ~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~ 817 (1293)
T KOG0996|consen 738 WRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPE 817 (1293)
T ss_pred eEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55677777653 2333333222 222233331 1455566666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001556 675 VKRRCFSAERNRMSKELAFQDVKNSFAA 702 (1054)
Q Consensus 675 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 702 (1054)
+...+..+...++.+-..+..+..++.+
T Consensus 818 l~~~l~~~~~~~k~~~~~~~~l~~~i~~ 845 (1293)
T KOG0996|consen 818 LENRLEKLTASVKRLAELIEYLESQIAE 845 (1293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444433
No 40
>PRK02224 chromosome segregation protein; Provisional
Probab=99.76 E-value=4.5e-11 Score=145.09 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCCceeEEeecccceEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHHHHhhhh------
Q 001556 916 ATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM------ 989 (1054)
Q Consensus 916 ~~~~~~~~~~~f~~l~~~~~~~g~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~~al~~~------ 989 (1054)
...+...++.+|..+|.. ++...+.++ ++ +.+.+.- ++|..+ ++..||||++.+++|||++|++..
T Consensus 736 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~-~~--~~i~~~~---~~g~~~-~~~~lS~G~~~~~~lalr~a~~~~~~~~~~ 807 (880)
T PRK02224 736 VETLERMLNETFDLVYQN-DAYSHIELD-GE--YELTVYQ---KDGEPL-EPEQLSGGERALFNLSLRCAIYRLLAEGIE 807 (880)
T ss_pred HHHHHHHHHHHHHHHcCC-CCeeEEEec-CC--cceeeeC---CCCCcc-ChhhcCccHHHHHHHHHHHHHHHHhhhccc
Confidence 344445556666655542 112234443 22 3344432 134333 678899999999999999987753
Q ss_pred --cCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEEecC
Q 001556 990 --TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQMA 1050 (1054)
Q Consensus 990 --~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~~ 1050 (1054)
.|.|++|||||+++||+.++..++..|..+.....+|||||||++..+..++..+.|.+-|
T Consensus 808 ~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~~ 870 (880)
T PRK02224 808 GDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVEKDP 870 (880)
T ss_pred CCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEeecCC
Confidence 2357789999999999999988888887765222469999999996554444445554433
No 41
>PRK00064 recF recombination protein F; Reviewed
Probab=99.75 E-value=1.4e-16 Score=167.25 Aligned_cols=101 Identities=26% Similarity=0.415 Sum_probs=87.7
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEec
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~ 99 (1054)
|+|.+|.|.||++|.+.+++|+||+|+|+||||+|||||++||.+++++.+. |.....++|+.|...+.|.++|.++
T Consensus 1 M~i~~l~i~nfr~~~~~~l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~---r~~~~~~li~~g~~~~~v~~~~~~~ 77 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSH---RTARDKELIRFGAEAAVIHGRVEKG 77 (361)
T ss_pred CEEEEEEEeCCCcccceEEEecCCeEEEECCCCCCHHHHHHHHHHhCCCCCc---cCCChhHHHhcCCCcEEEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999887653 6667789999999999999999764
Q ss_pred CcccccccccCCceEEEEEee-CCCCeEEEEcCCCCcc
Q 001556 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRV 136 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~ 136 (1054)
+..+.|.|.+. .+.+.+.+ ||.++
T Consensus 78 ----------~~~~~i~~~~~~~~~~~~~i---ng~~~ 102 (361)
T PRK00064 78 ----------GRELPLGLEIDKKGGRKVRI---NGEPQ 102 (361)
T ss_pred ----------CcEEEEEEEEEcCCceEEEE---CCccc
Confidence 24578888887 45577888 67766
No 42
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=8.8e-17 Score=162.68 Aligned_cols=100 Identities=24% Similarity=0.413 Sum_probs=85.7
Q ss_pred EeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEecCc
Q 001556 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (1054)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~~~ 101 (1054)
|.+|.|.||++|.+.+++|+||+|+|+||||||||||++||.|++|+.+. |.....++++.|...+.|+++|.+.+
T Consensus 1 l~~l~i~nfr~~~~~~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~~---r~~~~~~~i~~~~~~~~v~~~f~~~~- 76 (270)
T cd03242 1 LKSLELRNFRNYAELELEFEPGVTVLVGENAQGKTNLLEAISLLATGKSH---RTSRDKELIRWGAEEAKISAVLERQG- 76 (270)
T ss_pred CcEEEEeCCcCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHhccCCCC---CCCCHHHHHhcCCCCEEEEEEEEeCC-
Confidence 57899999999999999999999999999999999999999999998653 55567899999999999999998752
Q ss_pred ccccccccCCceEEEEEee-CCCCeEEEEcCCCCccc
Q 001556 102 DAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVA 137 (1054)
Q Consensus 102 ~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~ 137 (1054)
..+.|.|.+. ++++.|++ ||..++
T Consensus 77 ---------~~~~i~~~~~~~~~~~~~i---ng~~~~ 101 (270)
T cd03242 77 ---------GELALELTIRSGGGRKARL---NGIKVR 101 (270)
T ss_pred ---------CeEEEEEEEEcCCceEEEE---CCeecc
Confidence 3478899886 56778888 565553
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.73 E-value=1.8e-14 Score=165.64 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCceeEEeecccceEEEEEecCCCCCCCcccCCCCCCCChhhHHHHHHHHHhhhh------
Q 001556 916 ATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM------ 989 (1054)
Q Consensus 916 ~~~~~~~~~~~f~~l~~~~~~~g~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal~~al~~~------ 989 (1054)
.......|+..++.++..++ +.+.+..++ .+...+.. .|....++..|||||+.+++||+.|++...
T Consensus 422 ~~~~l~~~n~~~~~~L~~l~--~~~~~~~~~-~~~~~~~~----~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~ 494 (562)
T PHA02562 422 IKKYIPYFNKQINHYLQIME--ADYNFTLDE-EFNETIKS----RGREDFSYASFSQGEKARIDLALLFTWRDVASKVSG 494 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhh--eeEEEEech-hhhhHHhc----CCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445556666666666443 333343322 22233332 222223567899999999999998874321
Q ss_pred cCCCceeechhh-hhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEEe
Q 001556 990 TEAPFRAMDEFD-VFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1048 (1054)
Q Consensus 990 ~~~p~~v~DE~~-~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1048 (1054)
.+++++|||||+ ++||+..+..+...|..+ .+.+||+|||++.....++..+.+.+
T Consensus 495 ~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~~~~~~d~~~~l~~ 551 (562)
T PHA02562 495 VDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDHDPQKFDRHLKMEK 551 (562)
T ss_pred CCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchhchhhhhcEEEEEE
Confidence 367899999997 789999988888877775 57899999999754444444455443
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=6.6e-10 Score=121.21 Aligned_cols=236 Identities=13% Similarity=0.137 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 684 RNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKE 763 (1054)
Q Consensus 684 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 763 (1054)
..+...+...+.+..+.+. +...+...+..+..+...+..+..++..+...+.........++.++......+..
T Consensus 808 ~~~ek~~~e~e~l~lE~e~-----l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 808 KELEKRENEYERLQLEHEE-----LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444 45555555555555555666666666666555555555555555555554444433
Q ss_pred HHhhH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCChhhh
Q 001556 764 EVDTF-------EAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASV--ICPESEI 834 (1054)
Q Consensus 764 ~~~~l-------~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~ 834 (1054)
...++ +.+..+.......+..+..++..++... ......+..+.....=+..+..-+-..-.. +......
T Consensus 883 ~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~-~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~ 961 (1174)
T KOG0933|consen 883 IDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEK-ANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPH 961 (1174)
T ss_pred hhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhH-HHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHh
Confidence 33322 2222222222233334444444444443 333333333333332222111111100000 0000000
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHHHHhhh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 835 EALGGWDGSTPEQLSAQVNRLNQRLKHESHQ----YSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWG 910 (1054)
Q Consensus 835 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~ 910 (1054)
. .+..+..|......++..+..-+.. ....+.++....+.+......+..-+..+...-. ..+...|.
T Consensus 962 ~-----are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~---~~L~kaw~ 1033 (1174)
T KOG0933|consen 962 E-----AREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKR---EELNKAWE 1033 (1174)
T ss_pred H-----HHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 0 0233444444444444443321111 2223344445555555555555554444444332 55778888
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhh
Q 001556 911 KFQRNATLLKRQLT-WQFNGHLGK 933 (1054)
Q Consensus 911 ~~~~~~~~~~~~~~-~~f~~l~~~ 933 (1054)
.+...|..|+..+- ..+..+-+.
T Consensus 1034 ~VN~dFG~IFs~LLPga~AkL~Pp 1057 (1174)
T KOG0933|consen 1034 KVNKDFGSIFSTLLPGAMAKLEPP 1057 (1174)
T ss_pred HHhhhHHHHHHHhCCCccccccCC
Confidence 88888888887763 345555543
No 45
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=9.6e-17 Score=163.01 Aligned_cols=113 Identities=30% Similarity=0.443 Sum_probs=92.1
Q ss_pred EeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEecCc
Q 001556 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (1054)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~~~ 101 (1054)
|.+|.|.||++|...+|+|+||+|+|+||||||||||++||+|++|+.+. .++++.|...+.|.++|.+.+.
T Consensus 1 l~~l~i~nf~~~~~~~i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 72 (276)
T cd03241 1 LLELSIKNFALIEELELDFEEGLTVLTGETGAGKSILLDALSLLLGGRAS--------ADLIRSGAEKAVVEGVFDISDE 72 (276)
T ss_pred CcEEEEeCccceeeeEEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCCh--------HHHhhCCCCeEEEEEEEecCCc
Confidence 57899999999999999999999999999999999999999999998743 6889999999999999987543
Q ss_pred cc------ccccccCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHH
Q 001556 102 DA------FKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELI 147 (1054)
Q Consensus 102 ~~------~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 147 (1054)
.. +..-.+++.++|+|.+. ++.+.|++ ||..++ ...+.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~I---ng~~vs--l~~l~~i~ 120 (276)
T cd03241 73 EEAKALLLELGIEDDDDLIIRREISRKGRSRYFI---NGQSVT--LKLLRELG 120 (276)
T ss_pred hHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEE---CCEEEC--HHHHHHHH
Confidence 21 00012356799999998 77888999 677774 36676665
No 46
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.70 E-value=1e-16 Score=154.30 Aligned_cols=80 Identities=39% Similarity=0.717 Sum_probs=73.6
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEec
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~ 99 (1054)
|.|.+|+|.||++|+..+++|+||+|+|+|+||+|||||++||+++||+.+....|...+.++++.|...+.|+++|.+.
T Consensus 1 ~~i~~i~i~nfr~~~~~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 80 (213)
T cd03277 1 GSIVRIKLENFVTYDETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN 80 (213)
T ss_pred CeeEEEEEeCCCCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeC
Confidence 57899999999999988999999999999999999999999999999998866567778899999999999999999775
No 47
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.69 E-value=1.2e-09 Score=132.53 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcch
Q 001556 633 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAV 712 (1054)
Q Consensus 633 ~~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 712 (1054)
+..++..+..+++.-......+...+..++.+...++.+++.-......+...+.....+...+..+++.. .....
T Consensus 1299 ~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~----~~~~~ 1374 (1930)
T KOG0161|consen 1299 LESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEE----VLQRL 1374 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 44555555656655555556666666666666666666666666666666677776666666666655541 12224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001556 713 DEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHY 792 (1054)
Q Consensus 713 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 792 (1054)
..++.....+...+..++..+..+......++.....++.++..+...+.........+..........+...+.....+
T Consensus 1375 eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l 1454 (1930)
T KOG0161|consen 1375 EELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKL 1454 (1930)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555666666666666655555555555555555555444444443333444444444444444444444333
Q ss_pred HHHH
Q 001556 793 EDVM 796 (1054)
Q Consensus 793 ~~~l 796 (1054)
...+
T Consensus 1455 ~~El 1458 (1930)
T KOG0161|consen 1455 QAEL 1458 (1930)
T ss_pred HHHH
Confidence 3333
No 48
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.68 E-value=6.2e-17 Score=114.96 Aligned_cols=49 Identities=35% Similarity=0.489 Sum_probs=45.6
Q ss_pred EeEEEEEecccccceEEEeCC-c-eEEEEcCCCCchHHHHHHHHHHhcCCc
Q 001556 22 ITRVRLENFMCHSSLQIELGE-W-VNFITGQNGSGKSAILTALCIAFGCRA 70 (1054)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~-~-~~~I~G~NGsGKStil~ai~~~lg~~~ 70 (1054)
+.+|.|.||++|...+++|++ | +++|+||||||||||||||.|+|++..
T Consensus 1 L~rl~L~Nw~~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 478999999999889999986 3 899999999999999999999999887
No 49
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.67 E-value=3.1e-09 Score=128.92 Aligned_cols=105 Identities=10% Similarity=0.199 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcchH
Q 001556 634 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVD 713 (1054)
Q Consensus 634 ~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 713 (1054)
+.++.+++..+..+...+..+..+...+..+...+...+.+....+..+.+....+..+++.+..+++. -.....
T Consensus 1244 E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~-----e~r~k~ 1318 (1930)
T KOG0161|consen 1244 EAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEE-----ETREKS 1318 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 444555555555555554444444555555555555555555555555555555555555555444443 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 714 EISQEISNIQEEIQEKEIILEKLQFSMNEA 743 (1054)
Q Consensus 714 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 743 (1054)
.+...+..++.++..+..+++.-......+
T Consensus 1319 ~l~~~l~~l~~e~~~l~e~leee~e~~~~l 1348 (1930)
T KOG0161|consen 1319 ALENALRQLEHELDLLREQLEEEQEAKNEL 1348 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333333333
No 50
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=2.6e-14 Score=149.41 Aligned_cols=77 Identities=27% Similarity=0.397 Sum_probs=70.8
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEec
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~ 99 (1054)
|+|.+|.|.||++|...+++|+||+|+|+||||+|||||++||++++++.+. |.....++|+.|...+.|.++|..+
T Consensus 1 M~l~~L~i~nFR~~~~~~l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s~---R~~~~~~li~~g~~~~~v~~~~~~~ 77 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSH---RTSRDKPLIRFGAEAFVIEGRVSKG 77 (365)
T ss_pred CEEEEEEEeCCcceeeeEEEECCCeEEEECCCCCCHHHHHHHHHHHcccCCc---cccchhhHHhCCCCeEEEEEEEEeC
Confidence 8999999999999999999999999999999999999999999998877653 6667789999999999999999875
No 51
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.65 E-value=8.6e-15 Score=146.40 Aligned_cols=134 Identities=24% Similarity=0.401 Sum_probs=101.4
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEec
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~ 99 (1054)
|+|.+|.|.||++|...+++|+||+|+++|+||+|||+||+||.++-.|++. |+....++|+.++..+.|...+...
T Consensus 1 M~l~~L~L~nFRNy~~~~l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~---Rt~~~~~lir~~~~~~~i~~~v~~~ 77 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDLDLSPGVNVLVGENGQGKTNLLEAIYLLALGRSH---RTSRDKELIRTGADEAEISARVQRK 77 (363)
T ss_pred CceeeeehhhcCCcccceeccCCCcEEEECCCCCchHHHHHHHHHHccccCc---cccchhHHHhcCCccEEEEEEEeec
Confidence 8899999999999999999999999999999999999999999998887775 6666789999999999999999876
Q ss_pred CcccccccccCCceEEEEEee-CCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhcCCChhhh
Q 001556 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKDK 178 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 178 (1054)
+ ....+.-.+. .|+....+ ||..+. .+.+++..+ ++++|.++...-|-.++..+++
T Consensus 78 ~----------~~~~~~~~~~~~g~~~vri---ng~~~~----~~~el~g~l------~~vlf~Pedl~Lv~G~P~~RRr 134 (363)
T COG1195 78 G----------REGTLGLQISKKGRRRVRI---NGTKAR----KLAELAGHL------NVVLFTPEDLGLVKGSPSDRRR 134 (363)
T ss_pred c----------ceeeeEEEeccCcceEEEE---CCcccc----cHHHHhhhC------ceEEecccccccccCCHHHHHH
Confidence 2 3345555554 44444666 454442 445566555 5667767666655444444444
Q ss_pred H
Q 001556 179 F 179 (1054)
Q Consensus 179 ~ 179 (1054)
|
T Consensus 135 F 135 (363)
T COG1195 135 F 135 (363)
T ss_pred H
Confidence 4
No 52
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.2e-08 Score=110.99 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001556 195 YNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPR 274 (1054)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1054)
..+..+....+++....-..+...+..++..+..+++-.+-...+..+.......++.-+..++.+...++..+......
T Consensus 169 eerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~ 248 (1200)
T KOG0964|consen 169 EERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSS 248 (1200)
T ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 45666667778888888899999999999999999877777778888888888888888899999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001556 275 CQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISL 323 (1054)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (1054)
.-.+-+.....+...+.....+..++.+++..+..+......+..+-..
T Consensus 249 ~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~ 297 (1200)
T KOG0964|consen 249 APEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETK 297 (1200)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888889999999999999999988888877777776443
No 53
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.64 E-value=2e-15 Score=152.12 Aligned_cols=142 Identities=23% Similarity=0.350 Sum_probs=106.1
Q ss_pred EeEEEEEecccccceEE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCc----eEEEEEE
Q 001556 22 ITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAMVEVE 95 (1054)
Q Consensus 22 i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~----~~~v~l~ 95 (1054)
|++|+|.||++|++..+ +|++++|+|+||||||||||++||+|+|+...+. .|.....++++.|.. .++|++.
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTH-LREEQRQALLHEGSGPSVMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhh-hhhhhHHHhEeCCCCCCCceEEEEEE
Confidence 67999999999987766 8899999999999999999999999999876554 455445677876654 5789999
Q ss_pred EEecCcccccccccCCceEEEEEeeCCCCeEEEEcCCCCcccccHHHHHHHHHhcCCCCCCCceeechhhhhhhhcC
Q 001556 96 LKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (1054)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 172 (1054)
|.+.+.. .+ .....+.+.|.+......+.++ +..+ +..++..++..+++...++++.++++.+..++..
T Consensus 80 ~~~~~~~--~~-~~~~~~~i~r~ig~~~~~~~l~---~~~~--t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l 148 (243)
T cd03272 80 FDNSDNR--FP-IDKEEVRLRRTIGLKKDEYFLD---KKNV--TKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNM 148 (243)
T ss_pred EEcCCCc--cC-CCCCEEEEEEEEECCCCEEEEC---CeEc--CHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhc
Confidence 9765322 11 1235688888887545667773 4333 2357888888888877777777888888777654
No 54
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.63 E-value=5e-16 Score=144.66 Aligned_cols=78 Identities=33% Similarity=0.501 Sum_probs=68.7
Q ss_pred EeEEEEEecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccch---hHhhhcCCceEEEEEEEE
Q 001556 22 ITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL---KDFIKTGCSYAMVEVELK 97 (1054)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~---~~~i~~g~~~~~v~l~~~ 97 (1054)
|++|++.||++|...++.|.++ +|+|+||||||||||++||+|++|+++....+...+ .++++.|...++|+|+|.
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~ 80 (178)
T cd03239 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFD 80 (178)
T ss_pred CcEEEEECccCCCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEE
Confidence 5799999999999888877666 999999999999999999999999988876666554 677889999999999998
Q ss_pred ec
Q 001556 98 NR 99 (1054)
Q Consensus 98 ~~ 99 (1054)
+.
T Consensus 81 ~~ 82 (178)
T cd03239 81 KS 82 (178)
T ss_pred Cc
Confidence 74
No 55
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=3e-15 Score=142.74 Aligned_cols=79 Identities=59% Similarity=0.896 Sum_probs=73.1
Q ss_pred EeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEEEecC
Q 001556 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (1054)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~~~~~ 100 (1054)
|.+|+|.||++|.+.+++|++|+|+|+||||+|||||++||.+++|+......|+..+.++++.|...+.|.++|.+.+
T Consensus 1 i~~l~l~nfr~~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~ 79 (198)
T cd03276 1 IESITLKNFMCHRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG 79 (198)
T ss_pred CeEEEEeCccceeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999987766678788999999999999999999864
No 56
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=4.7e-08 Score=108.43 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001556 236 TQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKD 315 (1054)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1054)
...+..+..+.........-.++-.++..+.....++..+...+..+..........+.....+.......+......+.
T Consensus 200 aeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~ 279 (1141)
T KOG0018|consen 200 AEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKIS 279 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554444444455556666666666666666666666666666666666665555444444444444444444
Q ss_pred HHHHHHHH
Q 001556 316 ELQQSISL 323 (1054)
Q Consensus 316 ~l~~~~~~ 323 (1054)
..+..+..
T Consensus 280 ~ke~~l~e 287 (1141)
T KOG0018|consen 280 EKEEKLAE 287 (1141)
T ss_pred HHHHHHhh
Confidence 44443333
No 57
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.51 E-value=8.5e-09 Score=113.41 Aligned_cols=179 Identities=13% Similarity=0.154 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001556 181 ATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKE 260 (1054)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 260 (1054)
..-+..+.+....+...+......+..++..+..+...++.+.+.......+.-+.....|....-...++..+......
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDR 259 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHH
Confidence 34456677778888888889999999999999999999999999888888888888888888777777777788888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 261 QTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTS 340 (1054)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (1054)
+..++..+......+....+.++.+..++..++......+.+....+.+....+....+.+......+..++......+.
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~ 339 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQK 339 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999988888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001556 341 YMQKMVNRVKGLEQQVHDI 359 (1054)
Q Consensus 341 ~~~~~~~~i~~~~~~~~~~ 359 (1054)
.+......+..++..+...
T Consensus 340 ~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 340 RIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhc
Confidence 8888888888888877653
No 58
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.50 E-value=6.5e-14 Score=136.61 Aligned_cols=90 Identities=24% Similarity=0.307 Sum_probs=73.3
Q ss_pred ceEeEEEEEecccc-cceEEEeCCc----eEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEE
Q 001556 20 GTITRVRLENFMCH-SSLQIELGEW----VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEV 94 (1054)
Q Consensus 20 m~i~~i~l~nf~~~-~~~~i~f~~~----~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l 94 (1054)
|++.+|++.||++| +...|+|.++ +++|+||||||||||++||.|+|+|......+.....+.+..+...+.|.+
T Consensus 1 m~~~~i~l~nf~~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred CEEEEEEEECCcCcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 88999999999998 6678999865 999999999999999999999998887643333234567777778889999
Q ss_pred EEEecCcccccccccCCceEEEEEe
Q 001556 95 ELKNRGEDAFKPEIFGDSIIIERRI 119 (1054)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~ 119 (1054)
.|.+. +..|.+.|.+
T Consensus 81 ~f~~~----------~~~~~~~r~~ 95 (213)
T cd03279 81 TFQLG----------GKKYRVERSR 95 (213)
T ss_pred EEEEC----------CeEEEEEEec
Confidence 99886 3456777744
No 59
>PRK03918 chromosome segregation protein; Provisional
Probab=99.48 E-value=1.5e-06 Score=106.50 Aligned_cols=88 Identities=25% Similarity=0.326 Sum_probs=68.8
Q ss_pred cccCCCCCCCChhhHHHHHHHHHhhhh--cCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCC
Q 001556 963 NVRDTRGLSGGERSFSTLCFALALHEM--TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQ 1040 (1054)
Q Consensus 963 ~~~~~~~lSgGErs~~~lal~~al~~~--~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~ 1040 (1054)
...++..||||++.+++||+++|++.+ .++|++||||||++||+.++..++..|..++ ..+.|||||||+.. ....
T Consensus 782 ~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~-~~~~~iiiith~~~-~~~~ 859 (880)
T PRK03918 782 KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYL-RKIPQVIIVSHDEE-LKDA 859 (880)
T ss_pred CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHH-hcCCEEEEEECCHH-HHHh
Confidence 344678899999999999998887653 6788999999999999999998888888875 34689999999985 4455
Q ss_pred CCCceEEecCCC
Q 001556 1041 GERIKKQQMAAP 1052 (1054)
Q Consensus 1041 ~~~~~v~~~~~~ 1052 (1054)
.+++-+....++
T Consensus 860 ~d~~~~l~~~~~ 871 (880)
T PRK03918 860 ADYVIRVSLEGG 871 (880)
T ss_pred CCeEEEEEecCC
Confidence 555444443333
No 60
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.47 E-value=1e-13 Score=136.58 Aligned_cols=49 Identities=37% Similarity=0.617 Sum_probs=43.8
Q ss_pred EEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCC
Q 001556 24 RVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72 (1054)
Q Consensus 24 ~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~ 72 (1054)
+|+|.||++|.+.+|+|+||+|+|+||||+|||||++||.|||||.++.
T Consensus 1 ~i~i~nf~~~~~~~i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~ 49 (202)
T PF13476_consen 1 KIHIKNFRSFKDLEIDFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR 49 (202)
T ss_dssp EEEEEEETTEEEEEEE--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred CEEEEEeCCCcceEEEcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 6899999999999999999999999999999999999999999998754
No 61
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.47 E-value=2.3e-13 Score=130.79 Aligned_cols=90 Identities=27% Similarity=0.395 Sum_probs=73.4
Q ss_pred EeEEEEEecccc-cceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCccc-ccchhHhhhcCCceEEEEEEEEec
Q 001556 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQR-AATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 22 i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r-~~~~~~~i~~g~~~~~v~l~~~~~ 99 (1054)
|++|+|.||++| ...+++|++|+++|+|||||||||+++||.|+++|....... .....+.+..+...+.|.+.|.+.
T Consensus 1 ~~~l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 1 IDKLSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred CcEEEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 579999999996 677999999999999999999999999999999887654221 113456778888889999999875
Q ss_pred CcccccccccCCceEEEEEee
Q 001556 100 GEDAFKPEIFGDSIIIERRIT 120 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~ 120 (1054)
. +..|++.|.+.
T Consensus 81 ~---------~~~~~v~r~~~ 92 (204)
T cd03240 81 N---------GKKYTITRSLA 92 (204)
T ss_pred C---------CCEEEEEEEhh
Confidence 1 35688888764
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.39 E-value=5.9e-06 Score=101.31 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=49.1
Q ss_pred CCceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCc
Q 001556 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (1054)
Q Consensus 18 ~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~ 70 (1054)
..++|++|.|.||++|.+.+|+|++|+++|+|+|||||||+|+||.++|++..
T Consensus 3 ~~~ki~~l~l~N~~~~~~~~~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~ 55 (1486)
T PRK04863 3 ERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDL 55 (1486)
T ss_pred CCceeeEEEEecccCccceEEEecCCeEEEECCCCCCHHHHHHHHHccccCCC
Confidence 45799999999999999999999999999999999999999999999987554
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.37 E-value=8.6e-06 Score=100.87 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=34.1
Q ss_pred EEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCccccc
Q 001556 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA 77 (1054)
Q Consensus 37 ~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~ 77 (1054)
+|.++ |.|-|+|.||+||||++.+|.+.+|..|+...+..
T Consensus 13 El~lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~k~ 52 (1201)
T PF12128_consen 13 ELKLD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRLVPKT 52 (1201)
T ss_pred EEecC-CceeeecCCCCcHHHHHHHHHHhcCCCccccCCcc
Confidence 66777 78889999999999999999999999888755443
No 64
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=1.7e-05 Score=99.71 Aligned_cols=72 Identities=22% Similarity=0.228 Sum_probs=60.2
Q ss_pred ccCCCCCCCChhhHHHHHHHHHhhh--hcCCCceeechhhhhcchhhHHHHHHHHHHHHh----cCCcEEEEeccCCC
Q 001556 964 VRDTRGLSGGERSFSTLCFALALHE--MTEAPFRAMDEFDVFMDAISRKISLDTLVDFAL----AQGSQWIFITPHDV 1035 (1054)
Q Consensus 964 ~~~~~~lSgGErs~~~lal~~al~~--~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~----~~~~Q~i~iT~~~~ 1035 (1054)
+.....||||++.+++|.+++||+. +.+|++++||||++|||+.+...+...|..+.. ..+++||||||...
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~ 1271 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED 1271 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH
Confidence 3345789999999999998888776 467889999999999999999888888887743 24789999999974
No 65
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.30 E-value=5.5e-12 Score=120.31 Aligned_cols=78 Identities=27% Similarity=0.449 Sum_probs=62.2
Q ss_pred EeEEEEEecccc-cceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCc------eEEEEE
Q 001556 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (1054)
Q Consensus 22 i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~------~~~v~l 94 (1054)
|++|.+.||++| .+..++|.+|+++|+|||||||||+++||.|+++.......++....+++..|.. ...|.+
T Consensus 1 ~~~~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (197)
T cd03278 1 LKKLELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL 80 (197)
T ss_pred CcEEEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEE
Confidence 578999999999 7889999999999999999999999999999987553333455555667665543 467777
Q ss_pred EEEec
Q 001556 95 ELKNR 99 (1054)
Q Consensus 95 ~~~~~ 99 (1054)
.|.+.
T Consensus 81 vfq~~ 85 (197)
T cd03278 81 TFDNS 85 (197)
T ss_pred EEEcC
Confidence 77765
No 66
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.25 E-value=1.4e-11 Score=118.86 Aligned_cols=78 Identities=33% Similarity=0.497 Sum_probs=60.1
Q ss_pred ceEeEEEEEecccccceEE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCC-----ceEEE
Q 001556 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC-----SYAMV 92 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~-----~~~~v 92 (1054)
|.|++|+|.||++|++..+ ++++.++.|+|||||||||++++|.|++|..... .+...+..++..+. +.+.+
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 79 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASK-MRQKKLSDLIHNSAGHPNLDSCSV 79 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHHH-hhhhhHHHHhcCCCCCCCCceEEE
Confidence 7899999999999977655 6677899999999999999999999998865432 34344556665443 34677
Q ss_pred EEEEEe
Q 001556 93 EVELKN 98 (1054)
Q Consensus 93 ~l~~~~ 98 (1054)
...|..
T Consensus 80 ~~~~~~ 85 (212)
T cd03274 80 EVHFQE 85 (212)
T ss_pred EEEEEe
Confidence 777765
No 67
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.21 E-value=4e-05 Score=92.47 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcch
Q 001556 633 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAV 712 (1054)
Q Consensus 633 ~~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 712 (1054)
+..+.......+.++...+..+...+..++..+..+..++.....++..++.....|....+.+...+... --...
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~----d~~~~ 1309 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDS----DKNDY 1309 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CHHHH
Confidence 34555556666666666666666666666666666666666666677777777777766666666554331 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 713 DEISQEISNIQEEIQEKEIILEKLQFSMNEAE 744 (1054)
Q Consensus 713 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 744 (1054)
..+...+..+..++...+..+.++...+..+.
T Consensus 1310 ~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555444444
No 68
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.14 E-value=8.8e-05 Score=89.66 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=28.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 762 KEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSC 822 (1054)
Q Consensus 762 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 822 (1054)
..++.........++++...+..+...+..++..+ ..+..++......+..+..+...+.
T Consensus 1232 ~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l-~el~~e~~~~~ael~~l~~e~~~wK 1291 (1822)
T KOG4674|consen 1232 KVLREENEANLEKIQELRDKIEKLNFELAPLQNEL-KELKAELQEKVAELKKLEEENDRWK 1291 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555554 4444444444444444444443333
No 69
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=99.12 E-value=2.1e-09 Score=110.14 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=60.1
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhc------CCceEEEE
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT------GCSYAMVE 93 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~------g~~~~~v~ 93 (1054)
|+|.+|+|.||+++....|.|++ +|+++|+|++||||+++||.++|+.... .+.-...||-.. ......|.
T Consensus 1 M~l~~i~i~~FRgi~~~~~~l~~-~t~liG~N~~GKss~l~Al~~~l~~~~~--~~~f~~~DFh~~~~~~~~~~~~i~i~ 77 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSLPLDD-NTVLIGENNWGKSSLLDALSLLLSPSRR--LYQFTESDFHVPPGEEHDQERHIQIV 77 (373)
T ss_pred CeEEEEEEeccCccceEEEEecC-ceEEEcCCCccHhHHHHHHHHHhCCCcc--ccccCHHHhCCCcccccccCceEEEE
Confidence 89999999999999999999995 8999999999999999999999998754 232334555421 22345666
Q ss_pred EEEEec
Q 001556 94 VELKNR 99 (1054)
Q Consensus 94 l~~~~~ 99 (1054)
++|...
T Consensus 78 ~~F~e~ 83 (373)
T PF11398_consen 78 LTFCES 83 (373)
T ss_pred EEecCC
Confidence 777644
No 70
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.10 E-value=2.5e-10 Score=109.04 Aligned_cols=88 Identities=53% Similarity=0.876 Sum_probs=74.4
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhc-CCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALA-QGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~-~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..||||++.+++||..+++|.+.++++++||||+++||..++..+...|.++... .+.+.|+||.|.+..+...+.+
T Consensus 106 ~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v 185 (198)
T cd03276 106 DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDV 185 (198)
T ss_pred cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccce
Confidence 567899999999999999999999999999999999999999999999988887633 2566666665555555556899
Q ss_pred eEEecCCCC
Q 001556 1045 KKQQMAAPR 1053 (1054)
Q Consensus 1045 ~v~~~~~~~ 1053 (1054)
.|.|+.+||
T Consensus 186 ~~~~~~~~~ 194 (198)
T cd03276 186 KVFRMKDPR 194 (198)
T ss_pred eEEEecCCC
Confidence 999999997
No 71
>PF13166 AAA_13: AAA domain
Probab=99.09 E-value=1.8e-07 Score=111.25 Aligned_cols=68 Identities=19% Similarity=0.113 Sum_probs=58.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhh-----hcCCCceeechhhhhcchhhHHHHHHHHHHHHh-cCCcEEEEeccCC
Q 001556 967 TRGLSGGERSFSTLCFALALHE-----MTEAPFRAMDEFDVFMDAISRKISLDTLVDFAL-AQGSQWIFITPHD 1034 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~-----~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~-~~~~Q~i~iT~~~ 1034 (1054)
...||.|||..+|+|+-||... +...+++|||+|=+-||..++..++.+|.+.+. ....||||+||+-
T Consensus 498 ~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~ 571 (712)
T PF13166_consen 498 AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNL 571 (712)
T ss_pred cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcH
Confidence 4779999999999999888665 125678899999999999999999999999842 3779999999976
No 72
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=99.04 E-value=9.5e-11 Score=112.59 Aligned_cols=50 Identities=36% Similarity=0.593 Sum_probs=46.9
Q ss_pred ceEeEEEEEecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCC
Q 001556 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCR 69 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~lg~~ 69 (1054)
|+|.+|.|.||++|....|.|+++ .|+|+|||||||||+||||.-||...
T Consensus 1 mrLrkiSl~nfr~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~f 51 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKF 51 (440)
T ss_pred CccchhhhhhhhhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhh
Confidence 789999999999999999999998 99999999999999999999998643
No 73
>COG5293 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=1.7e-05 Score=79.44 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=38.1
Q ss_pred ceEeEEEEEe-cccccceEEEeCCceEEEEc-----------CCCCchHHHHHHHHHHhcCCcC
Q 001556 20 GTITRVRLEN-FMCHSSLQIELGEWVNFITG-----------QNGSGKSAILTALCIAFGCRAK 71 (1054)
Q Consensus 20 m~i~~i~l~n-f~~~~~~~i~f~~~~~~I~G-----------~NGsGKStil~ai~~~lg~~~~ 71 (1054)
|.+.+.-.+| =-.|. ++.|.||+|+|.| .||-||||+++.|.||||+.-.
T Consensus 4 mi~~~~~~cN~q~vfk--~vkFnpGlNIVlae~red~~~~~~tnglGKSTlie~i~Fclg~ti~ 65 (591)
T COG5293 4 MIKLSKLYCNHQQVFK--PVKFNPGLNIVLAEIREDENRKKDTNGLGKSTLIELIDFCLGSTID 65 (591)
T ss_pred eeeehheeeccccccc--eeeeCCCceEEeeeccCcccccccccCcchhhHHHHHHHHhccccc
Confidence 4444444444 22233 5789999999998 6999999999999999998876
No 74
>PRK01156 chromosome segregation protein; Provisional
Probab=98.93 E-value=0.00056 Score=83.64 Aligned_cols=84 Identities=23% Similarity=0.285 Sum_probs=64.8
Q ss_pred ccCCCCCCCChhhHHHHHHHHHhhhh--cCCCceeechhhhhcchhhHHHHHHHHHHHHhc-CC-cEEEEeccCCCCCCC
Q 001556 964 VRDTRGLSGGERSFSTLCFALALHEM--TEAPFRAMDEFDVFMDAISRKISLDTLVDFALA-QG-SQWIFITPHDVGLVK 1039 (1054)
Q Consensus 964 ~~~~~~lSgGErs~~~lal~~al~~~--~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~-~~-~Q~i~iT~~~~~~~~ 1039 (1054)
..++..||||++.+++||++||++.+ .++|+++|||||+|||+.++..++..|...... .+ +|+|||||+.... .
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~ 874 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-S 874 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-H
Confidence 34677899999999999999998764 578899999999999999988888877654432 22 6999999999644 4
Q ss_pred CCCC-ceEEe
Q 001556 1040 QGER-IKKQQ 1048 (1054)
Q Consensus 1040 ~~~~-~~v~~ 1048 (1054)
++++ +.|.+
T Consensus 875 ~~d~ii~~~~ 884 (895)
T PRK01156 875 VADVAYEVKK 884 (895)
T ss_pred hcCeEEEEEe
Confidence 4433 44443
No 75
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.91 E-value=4.4e-09 Score=101.60 Aligned_cols=88 Identities=34% Similarity=0.471 Sum_probs=73.6
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhc-CCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALA-QGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~-~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..||||+++++.++.++|++.+.++|++++|||+++||+.++..+...|.++.+. .+.++|++||+........+.+
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCce
Confidence 457899999999999999998888999999999999999999999999999888643 2369999999987666666667
Q ss_pred eEEecCCCC
Q 001556 1045 KKQQMAAPR 1053 (1054)
Q Consensus 1045 ~v~~~~~~~ 1053 (1054)
.|+-|.+.+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 777766543
No 76
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.90 E-value=2.3e-10 Score=133.67 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 633 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNV 675 (1054)
Q Consensus 633 ~~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 675 (1054)
++..|.+++..+.........+...+..+...+..+...+...
T Consensus 551 LE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~ 593 (859)
T PF01576_consen 551 LESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEA 593 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4444445554444444444444444444444444444444333
No 77
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.90 E-value=1.5e-09 Score=100.41 Aligned_cols=68 Identities=40% Similarity=0.580 Sum_probs=52.2
Q ss_pred EEEEecccc-cceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCCcCCcccccchhHhhhcCCceEEEEEEE
Q 001556 25 VRLENFMCH-SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (1054)
Q Consensus 25 i~l~nf~~~-~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~l~~ 96 (1054)
|.+.||++| .+..|.|.++ +++|+|||||||||++++|.|+++.......|. +.++.|...+.++++|
T Consensus 2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~ 71 (162)
T cd03227 2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR----SGVKAGCIVAAVSAEL 71 (162)
T ss_pred ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc----CcccCCCcceeeEEEE
Confidence 678899997 6778887755 999999999999999999999999887655552 2234555555666554
No 78
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.84 E-value=0.00058 Score=77.73 Aligned_cols=32 Identities=6% Similarity=-0.018 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 873 LRMLYEEKEHKILRKQQTYQAFREKVRACREA 904 (1054)
Q Consensus 873 ~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~ 904 (1054)
...+++.+...+..+..+.......|..|...
T Consensus 567 aq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 567 AQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555555555555555555555555544
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.82 E-value=1.7e-05 Score=78.05 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 256 RQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVM 303 (1054)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 303 (1054)
.++..+..........+..+..........+..++..+..+.......
T Consensus 64 ~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~ 111 (237)
T PF00261_consen 64 EKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEA 111 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 80
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.82 E-value=1.1e-08 Score=95.58 Aligned_cols=78 Identities=33% Similarity=0.485 Sum_probs=65.3
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceEEe
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQ 1048 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~ 1048 (1054)
|||||+.+++|+..++.+.+.+++++++|||+++||+.++..+...|.+++ ..+.++|++||.......++..+.|.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~-~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA-KHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 899999999999999888788889999999999999999999889888876 346899999999854443443355555
No 81
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.81 E-value=0.00068 Score=76.90 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 845 PEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLT 924 (1054)
Q Consensus 845 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 924 (1054)
...+..++..+..++.. ..-.+..+..+++.+...+..+..+..++......++..+.. ...|+..+..+...|.
T Consensus 450 ~~~~~~~i~~l~~~L~~----g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-~nRfr~~~~~V~~~f~ 524 (569)
T PRK04778 450 FFEVSDEIEALAEELEE----KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-ANRYRSDNEEVAEALN 524 (569)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCHHHHHHHH
Confidence 34455555666655543 223445555578888888888888888877777777666655 4567667777777776
Q ss_pred HHHHHhhh
Q 001556 925 WQFNGHLG 932 (1054)
Q Consensus 925 ~~f~~l~~ 932 (1054)
..-. +|+
T Consensus 525 ~Ae~-lF~ 531 (569)
T PRK04778 525 EAER-LFR 531 (569)
T ss_pred HHHH-HHH
Confidence 6544 454
No 82
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.80 E-value=1.9e-05 Score=77.74 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 662 EERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMN 741 (1054)
Q Consensus 662 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 741 (1054)
..++..+...+..........+..+..+...+..+...+.. ....+......+..+..........+..+.....
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~-----~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~ 88 (237)
T PF00261_consen 14 EERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELER-----AEERLEEATEKLEEAEKRADESERARKVLENREQ 88 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333333334444444444444444444455555554444 4445555555555555555555555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 001556 742 EAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEK 789 (1054)
Q Consensus 742 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 789 (1054)
.....+..+..++.............+......+..+...+.......
T Consensus 89 ~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~ 136 (237)
T PF00261_consen 89 SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA 136 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443433333333333333333333333333
No 83
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.79 E-value=6.5e-09 Score=99.31 Aligned_cols=83 Identities=23% Similarity=0.343 Sum_probs=67.2
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.+..|||||+.+++||..+++..+.+.++++||||+++||+.+...+...|.++. .+.+||++||+......++..+.
T Consensus 110 ~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~tiIiitH~~~~~~~~d~v~~ 187 (197)
T cd03278 110 RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS--KETQFIVITHRKGTMEAADRLYG 187 (197)
T ss_pred chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--cCCEEEEEECCHHHHhhcceEEE
Confidence 4678999999999999988765566778999999999999999999888888876 57899999999865443443466
Q ss_pred EEecC
Q 001556 1046 KQQMA 1050 (1054)
Q Consensus 1046 v~~~~ 1050 (1054)
|++..
T Consensus 188 ~~~~~ 192 (197)
T cd03278 188 VTMQE 192 (197)
T ss_pred EEecc
Confidence 66554
No 84
>PF13166 AAA_13: AAA domain
Probab=98.77 E-value=0.00012 Score=87.42 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=33.9
Q ss_pred eccccc--ceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCc
Q 001556 29 NFMCHS--SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (1054)
Q Consensus 29 nf~~~~--~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~ 70 (1054)
||++|. +.++++.+++|+|+|.|||||||+-..|.-+-++..
T Consensus 1 n~~~~~~~~~~~~~~~~~n~IYG~NGsGKStlsr~l~~~~~~~~ 44 (712)
T PF13166_consen 1 NYASFDNWDNELDEFKKINLIYGRNGSGKSTLSRILKSLCRGRG 44 (712)
T ss_pred CeeeecCCCccCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 688885 456766678999999999999999999987554443
No 85
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.76 E-value=0.0025 Score=80.01 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=60.4
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHH-hcCCcC--C----cccccchhHhhhcCC-----
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA-FGCRAK--G----TQRAATLKDFIKTGC----- 87 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~-lg~~~~--~----~~r~~~~~~~i~~g~----- 87 (1054)
-++.++-|.||..|++.+|+|++|+++|+|+|||||||+||||.|+ |.|... . ..+..++.+++..|.
T Consensus 2 w~~~R~gliN~~~~~~~~~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~~ 81 (1353)
T TIGR02680 2 WRPHRAGLVNLWYYDEQEFWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHDE 81 (1353)
T ss_pred ceeeeEEEEEeccccceEEecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCCC
Confidence 3678999999999999999999999999999999999999997755 445332 1 125557788888665
Q ss_pred --ceEEEEEEEEe
Q 001556 88 --SYAMVEVELKN 98 (1054)
Q Consensus 88 --~~~~v~l~~~~ 98 (1054)
.+++|++.+.+
T Consensus 82 ~~~y~~~e~~~~~ 94 (1353)
T TIGR02680 82 RVGYLWLEFGRVE 94 (1353)
T ss_pred cceeEEEEeeccC
Confidence 34455555544
No 86
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=98.74 E-value=1.3e-08 Score=90.29 Aligned_cols=50 Identities=28% Similarity=0.405 Sum_probs=45.7
Q ss_pred CCceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhc
Q 001556 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFG 67 (1054)
Q Consensus 18 ~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg 67 (1054)
.++++.++.|.||..|-..+++|+.-+|.+.|.|||||||+|.|+..+|-
T Consensus 3 ~r~k~~SLtlVNwNG~fartfdLd~lvTtL~G~NGAGKsT~m~Af~taLI 52 (227)
T PF04310_consen 3 ERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITALI 52 (227)
T ss_dssp -B-EEEEEEEECETTECEEEEEHHCCCCCCCCSTTCCHHHHHHHHHHHHS
T ss_pred cccccceEEEEeecCeeeeEeehhhheEeeecCCCCcchhhHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999998874
No 87
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.71 E-value=1.8e-08 Score=87.88 Aligned_cols=73 Identities=23% Similarity=0.285 Sum_probs=60.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||++++||=-| +..-|++.+||+|++||+.=|.-+..++.++....+.-++++||++.......++
T Consensus 127 P~~LSGGqRQRvALARcl----vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~ 199 (231)
T COG3840 127 PGELSGGQRQRVALARCL----VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADR 199 (231)
T ss_pred ccccCchHHHHHHHHHHH----hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhc
Confidence 567999999999987332 5788999999999999999888888888888778999999999999654444433
No 88
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.71 E-value=2.2e-09 Score=125.52 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 846 EQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREA 904 (1054)
Q Consensus 846 ~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~ 904 (1054)
..+...++.+..+++. +..+++++.........++..+..++++.......+...
T Consensus 795 ~~~~d~~~kl~~k~k~----~krq~eeaEe~~~~~~~k~Rk~q~elee~~e~~~~~e~~ 849 (859)
T PF01576_consen 795 ERLQDLVDKLQLKLKQ----LKRQLEEAEEEASRNLAKYRKLQRELEEAEERAEAAERE 849 (859)
T ss_dssp ----------------------------------------SSSSHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 333444454444444455555555555444444433333
No 89
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.70 E-value=1.7e-08 Score=95.07 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=63.1
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.+..|||||++++|+|=.++ ...++++.|||+++||..+...++.+|.++.+..+.=+|++||.+.....++ +
T Consensus 139 ~p~eLSGGqqQRVAIARAL~----~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d---r 211 (226)
T COG1136 139 KPSELSGGQQQRVAIARALI----NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD---R 211 (226)
T ss_pred CchhcCHHHHHHHHHHHHHh----cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC---E
Confidence 35679999999999986665 3455667999999999999999999999998667889999999996444333 4
Q ss_pred EEecCC
Q 001556 1046 KQQMAA 1051 (1054)
Q Consensus 1046 v~~~~~ 1051 (1054)
++.|.+
T Consensus 212 ~i~l~d 217 (226)
T COG1136 212 VIELKD 217 (226)
T ss_pred EEEEeC
Confidence 444444
No 90
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=1.6e-08 Score=97.80 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=62.9
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
++..||||||.+++||-.+|+. ..++|||||+++||+.+++.++..|.++....+.-+|++||+-.....+.+.+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~----P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v 209 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMG----PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRV 209 (235)
T ss_pred CccccCCcceeeHHhhHHHHcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEE
Confidence 5778999999999999888865 56888999999999999999999999987444678999999986565555443
No 91
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.69 E-value=2.7e-08 Score=95.82 Aligned_cols=72 Identities=24% Similarity=0.218 Sum_probs=59.6
Q ss_pred CCCCCCCChhhHHHHHHHHHhhh--hcCCCceeechhhhhcchhhHH-HHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHE--MTEAPFRAMDEFDVFMDAISRK-ISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~--~~~~p~~v~DE~~~~lD~~~~~-~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
.+..|||||+.+++||+++|++. +.+.|+++||||+++||+..+. .+.+.|.++....+.++|++||+....
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~ 186 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELV 186 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH
Confidence 45789999999999998877755 4677899999999999999988 888888887622278999999998543
No 92
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.67 E-value=2e-08 Score=100.65 Aligned_cols=85 Identities=25% Similarity=0.392 Sum_probs=68.1
Q ss_pred CcccCCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 962 SNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 962 ~~~~~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
.....+..||||++.+++||..+++..+.+.++++||||+++||...+..+.+.|.++. ..+.+||+|||+... ....
T Consensus 148 ~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~-~~g~~vi~isH~~~~-~~~~ 225 (247)
T cd03275 148 KRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQA-GPNFQFIVISLKEEF-FSKA 225 (247)
T ss_pred hhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhc-cCCcEEEEEECCHHH-HhhC
Confidence 34445678999999999999999876667788999999999999999988888888876 448899999999754 3444
Q ss_pred CC-ceEEe
Q 001556 1042 ER-IKKQQ 1048 (1054)
Q Consensus 1042 ~~-~~v~~ 1048 (1054)
+. +.++|
T Consensus 226 d~i~~~~~ 233 (247)
T cd03275 226 DALVGVYR 233 (247)
T ss_pred CeEEEEEe
Confidence 44 44444
No 93
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=4.5e-08 Score=93.75 Aligned_cols=74 Identities=23% Similarity=0.211 Sum_probs=62.4
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..|||||++++.||-.|| ....+++||||++|+|+.+...++++|.++... ++=|++|||.......+.+.+
T Consensus 136 ~i~~LSGGQ~QRV~lARAL~----~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~v 209 (254)
T COG1121 136 QIGELSGGQKQRVLLARALA----QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRV 209 (254)
T ss_pred cccccCcHHHHHHHHHHHhc----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEE
Confidence 57889999999999987665 567789999999999999999999988888644 999999999987666666553
No 94
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.63 E-value=0.0023 Score=72.43 Aligned_cols=11 Identities=18% Similarity=0.102 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 001556 180 KATLLQQVNDL 190 (1054)
Q Consensus 180 ~~~~~~~~~~~ 190 (1054)
+..++.++...
T Consensus 1169 WD~il~~L~~r 1179 (1758)
T KOG0994|consen 1169 WDAILQELALR 1179 (1758)
T ss_pred HHHHHHHHHHH
Confidence 44455444443
No 95
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.61 E-value=2.7e-08 Score=101.19 Aligned_cols=50 Identities=36% Similarity=0.591 Sum_probs=43.5
Q ss_pred eEeEEEEEecccccceEEE-eCCceEEEEcCCCCchHHHHHHHHHHhcCCcC
Q 001556 21 TITRVRLENFMCHSSLQIE-LGEWVNFITGQNGSGKSAILTALCIAFGCRAK 71 (1054)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~-f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~ 71 (1054)
+|+++.|.||++|.+..+. |. ++|+|+|+||||||++++||.+..+...+
T Consensus 1 MI~~~~IkNFkSf~e~~~~~~~-~in~I~G~N~sGKSNlleAl~f~~~~~~~ 51 (371)
T COG1106 1 MIKSFKIKNFKSFRELELEDFG-KINIIYGANGAGKSNLLEALYFLKGLISP 51 (371)
T ss_pred CceEEEecccccHHHhhhcccc-ceEEEEcCCCCchhHHHHHHHHHHHhccC
Confidence 4899999999999988875 76 59999999999999999999987664443
No 96
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.59 E-value=7.7e-08 Score=87.33 Aligned_cols=65 Identities=26% Similarity=0.264 Sum_probs=56.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
++.||||+++++|||=.||+ ....++||||+++|||+-..-+.+.|..++ ..|+-+||+||.=.-
T Consensus 134 P~qLSGGQqQRVAIARALaM----~P~vmLFDEPTSALDPElv~EVL~vm~~LA-~eGmTMivVTHEM~F 198 (240)
T COG1126 134 PAQLSGGQQQRVAIARALAM----DPKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMTMIIVTHEMGF 198 (240)
T ss_pred ccccCcHHHHHHHHHHHHcC----CCCEEeecCCcccCCHHHHHHHHHHHHHHH-HcCCeEEEEechhHH
Confidence 56799999999999987774 355677999999999999999999999998 788999999997643
No 97
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.59 E-value=6e-08 Score=78.15 Aligned_cols=54 Identities=28% Similarity=0.222 Sum_probs=41.6
Q ss_pred ccCCCCCCCChh-hHHHHHHHHHhhhh--------cCCCceeechhhhhcchhhHHHHHHHHH
Q 001556 964 VRDTRGLSGGER-SFSTLCFALALHEM--------TEAPFRAMDEFDVFMDAISRKISLDTLV 1017 (1054)
Q Consensus 964 ~~~~~~lSgGEr-s~~~lal~~al~~~--------~~~p~~v~DE~~~~lD~~~~~~~~~~l~ 1017 (1054)
..+...+||||+ ..++++|++|++.. ..+.+++|||+|++||+.+...++..|.
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 446788999999 88888888887642 1245777999999999999877777664
No 98
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.57 E-value=2.3e-08 Score=95.64 Aligned_cols=45 Identities=33% Similarity=0.557 Sum_probs=41.6
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHH
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~ 65 (1054)
|+|.+|.+.||++|....+++. ++|+|+|.||+||||+++|+.++
T Consensus 1 ~~l~si~vknyRs~r~l~lei~-~~nviIGANGaGKSn~~~~l~~l 45 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDLEIR-RVNVIIGANGAGKSNFYDALRLL 45 (373)
T ss_pred CccchhhhhcchhHHhcccccc-ceEEEEcCCCCchhHHHHHHHHH
Confidence 7899999999999999888777 79999999999999999998764
No 99
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.56 E-value=0.002 Score=69.08 Aligned_cols=51 Identities=8% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 635 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERN 685 (1054)
Q Consensus 635 ~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 685 (1054)
.++....++..++......++.+...++.++..++.++...+.....+...
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433333333333
No 100
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.55 E-value=7.6e-08 Score=97.01 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=64.4
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.+..||||++++++||..++..-+.+.+++++|||+++||+..+..+...|.++. .+.++|+|||++..+..++..+.
T Consensus 163 ~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~~~~~~~d~v~~ 240 (251)
T cd03273 163 SLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKEGMFNNANVLFR 240 (251)
T ss_pred cccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHhCCEEEE
Confidence 3567999999999999988866567788999999999999999998888888875 68899999999754444433344
Q ss_pred E
Q 001556 1046 K 1046 (1054)
Q Consensus 1046 v 1046 (1054)
|
T Consensus 241 ~ 241 (251)
T cd03273 241 T 241 (251)
T ss_pred E
Confidence 4
No 101
>PF13175 AAA_15: AAA ATPase domain
Probab=98.54 E-value=7e-08 Score=107.41 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=58.4
Q ss_pred cCCCCCCCChhhHHHHHHHHHhhhh--cCCC----ceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 965 RDTRGLSGGERSFSTLCFALALHEM--TEAP----FRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 965 ~~~~~lSgGErs~~~lal~~al~~~--~~~p----~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
.++..+|.|++.++.++++++.... ...+ +++||||.++|.|...+.+++.|.+++...+.|||+-||-|-
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 4678899999999998888765432 2223 888999999999999999999999998445899999999873
No 102
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=7.8e-08 Score=94.59 Aligned_cols=73 Identities=26% Similarity=0.285 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 128 ~~~LSgG~~qrl~la~al~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 128 PHELSGGQQQRVALARALA----REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 3568999999999987776 367899999999999999999999999887633478999999998543444433
No 103
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.53 E-value=8.5e-08 Score=103.27 Aligned_cols=50 Identities=34% Similarity=0.523 Sum_probs=48.7
Q ss_pred ceEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcCC
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCR 69 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~ 69 (1054)
|.|.+|+|.||++|...++.|..|+|+|+|+|.+|||||||||..+|...
T Consensus 1 M~L~~v~I~nFR~i~~lsl~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~ 50 (581)
T COG3593 1 MHLERVKIKNFRGINRLSLEFEEGLNVLIGENNSGKSSLLDALRLLLDPE 50 (581)
T ss_pred CcceeEEecccceeeeeeeeecCCceEEEcCCCcchHHHHHHHHHHcCCc
Confidence 88999999999999999999999999999999999999999999999885
No 104
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.51 E-value=1.1e-07 Score=91.94 Aligned_cols=82 Identities=24% Similarity=0.384 Sum_probs=66.2
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.+..||||++.+++||..+++..+.+.+++++|||+++||+..+..+.+.|.++. .+.++|++||++..+.-++..+.
T Consensus 124 ~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~~~~~~~~d~v~~ 201 (212)
T cd03274 124 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLRNNMFELADRLVG 201 (212)
T ss_pred chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECcHHHHHhCCEEEE
Confidence 3567999999999999888875556788999999999999999998888888875 67899999999754443444456
Q ss_pred EEec
Q 001556 1046 KQQM 1049 (1054)
Q Consensus 1046 v~~~ 1049 (1054)
+++-
T Consensus 202 ~~~~ 205 (212)
T cd03274 202 IYKT 205 (212)
T ss_pred EEec
Confidence 6554
No 105
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.50 E-value=1.5e-07 Score=90.82 Aligned_cols=76 Identities=25% Similarity=0.299 Sum_probs=66.3
Q ss_pred cCCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 965 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 965 ~~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+.+..||||||+++.||-.+| ..+|++++|||+++||..|--.+++++.++.+..+.=+|+++|......++++++
T Consensus 134 r~~~~LSGGerQrv~iArALa----Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 134 RPVDELSGGERQRVLIARALA----QETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred CcccccChhHHHHHHHHHHHh----cCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 357889999999999987666 5788999999999999999999999999998778899999999997777777654
No 106
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=1.2e-07 Score=93.85 Aligned_cols=72 Identities=28% Similarity=0.293 Sum_probs=58.6
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
..|||||+++++||..++. ..+++++|||+++||+.++..+.+.|.++....+.-||++||+........+.
T Consensus 130 ~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 130 HQLSGGMRQRVALARALAV----DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 5689999999999877763 66899999999999999999999999887644578899999998544443433
No 107
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.50 E-value=1.2e-07 Score=93.40 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=59.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. ..+.-||++||+........++
T Consensus 130 ~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 130 IGELSGGQQQRVLLARALV----QDPDLLLLDEPFAGVDPKTQEDIYELLRELR-REGMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCE
Confidence 4578999999999997776 4778999999999999999999999999886 3678899999998644444443
No 108
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.48 E-value=0.0027 Score=72.17 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 869 SIEDLRMLYEEKEHKILRKQQTYQAFREKVRA 900 (1054)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 900 (1054)
.++.+...++.+..+..++......+...|..
T Consensus 477 e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 477 LLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555543
No 109
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.48 E-value=1.2e-07 Score=94.14 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=59.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+.-+|++||+........++
T Consensus 112 ~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 184 (230)
T TIGR01184 112 PGQLSGGMKQRVAIARALS----IRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDR 184 (230)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 4568999999999987776 367899999999999999999999999888644578899999998543333333
No 110
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.47 E-value=1.4e-07 Score=92.72 Aligned_cols=72 Identities=25% Similarity=0.293 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++. ..+.-+|++||+........++
T Consensus 132 ~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~tvi~~sH~~~~~~~~~d~ 203 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLA----MDPDILLLDEPTAGLDPAGRRELLELLKKLK-AEGKTIIIVTHDLDLLLELADR 203 (211)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCE
Confidence 4578999999999987665 4678999999999999999999999998876 3478899999998544443433
No 111
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.4e-07 Score=87.42 Aligned_cols=66 Identities=30% Similarity=0.312 Sum_probs=56.0
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCC
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQ 1040 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~ 1040 (1054)
|||||+.+++|+..++.. +|++|+|||+++||..++..+...|..+. ..+.++|++||+.......
T Consensus 81 lS~G~~~r~~l~~~l~~~----~~i~ilDEp~~~lD~~~~~~l~~~l~~~~-~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 81 LSGGQRQRVALARALLLN----PDLLLLDEPTSGLDPASRERLLELLRELA-EEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHh
Confidence 999999999999888753 79999999999999999998888888876 3368999999998644443
No 112
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.46 E-value=1.4e-07 Score=93.86 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=59.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+++++||..|+ ...++++||||+++||..++..+...|.++....+.-||++||+........+.
T Consensus 113 ~~~LSgGe~qrv~iaraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~ 185 (246)
T cd03237 113 VPELSGGELQRVAIAACLS----KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADR 185 (246)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4679999999999997666 467899999999999999999999999888744578899999997543333433
No 113
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.9e-07 Score=94.22 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=59.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+.-||++||+........+.
T Consensus 142 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~ 214 (241)
T cd03256 142 ADQLSGGQQQRVAIARALM----QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADR 214 (241)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4579999999999997776 367899999999999999999999999988644578899999998644434444
No 114
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.45 E-value=1.5e-07 Score=92.75 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
+..|||||+++++||-.|+ ...+++++|||+++||+.++..+.+.|.++. ..+.-+|++||+........+
T Consensus 136 ~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 136 PMQLSGGEQQRVAIARAIV----HKPPLLLADEPTGNLDPELSRDIMRLFEEFN-RRGTTVLVATHDINLVETYRH 206 (216)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCC
Confidence 3568999999999997776 3678999999999999999999999998875 357889999999854444443
No 115
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.45 E-value=1.6e-07 Score=94.18 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+++++||..++ .+.++++||||+++||+.++..+.+.|.++....+.-+|++||+........++
T Consensus 131 ~~~LSgGqkqrl~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~ 203 (257)
T PRK11247 131 PAALSGGQKQRVALARALI----HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADR 203 (257)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 4578999999999987776 367899999999999999999999999887644578899999998543333333
No 116
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=1.7e-07 Score=82.45 Aligned_cols=37 Identities=43% Similarity=0.737 Sum_probs=32.7
Q ss_pred EEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCcCCc
Q 001556 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGT 73 (1054)
Q Consensus 37 ~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~ 73 (1054)
.++|.+.+|+|+|.||+|||||++||....|..+...
T Consensus 32 ~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg 68 (233)
T COG3910 32 RLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGG 68 (233)
T ss_pred hccccCceEEEEcCCCccHHHHHHHHHhhccccccCC
Confidence 6789999999999999999999999999887666543
No 117
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.7e-07 Score=94.36 Aligned_cols=73 Identities=26% Similarity=0.224 Sum_probs=59.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 126 ~~~LSgGq~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~ 198 (255)
T PRK11248 126 IWQLSGGQRQRVGIARALA----ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATE 198 (255)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4568999999999987776 367899999999999999999999999887544578999999998544343433
No 118
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.44 E-value=2.5e-07 Score=91.76 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=56.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.++++||||+++||..++..+...|.++....+.-+|++||+....
T Consensus 139 ~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 139 PSELSGGERQRVAIARALV----NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred hhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4579999999999997776 366899999999999999999999999887644478899999998543
No 119
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.43 E-value=2.4e-07 Score=90.96 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=59.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++....+..+|++||+........+.
T Consensus 126 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 126 PEQLSGGQRQRVALARCLV----RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 3468999999999998776 366899999999999999999999999988644478999999998543333433
No 120
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.43 E-value=2.8e-07 Score=88.69 Aligned_cols=64 Identities=27% Similarity=0.249 Sum_probs=55.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
+..|||||+.+++||..|+ .+.+++++|||+++||+.++..+.+.|.++. ..+.-+|++||+..
T Consensus 125 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~tili~sH~~~ 188 (190)
T TIGR01166 125 THCLSGGEKKRVAIAGAVA----MRPDVLLLDEPTAGLDPAGREQMLAILRRLR-AEGMTVVISTHDVD 188 (190)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HcCCEEEEEeeccc
Confidence 3568999999999987765 3678999999999999999999999998876 45789999999863
No 121
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.43 E-value=2.6e-07 Score=87.69 Aligned_cols=73 Identities=27% Similarity=0.283 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.+++++|||+.+||+.++..+...|.++....+..+|++||+........++
T Consensus 95 ~~~LS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 95 FNELSGGERQRVLLARALAQ----EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 46799999999998876663 67899999999999999999988888887622278999999998644344433
No 122
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.43 E-value=2.1e-07 Score=91.99 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=56.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++..+.+.-||++||+....
T Consensus 138 ~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 138 PSELSGGQQQRVAIARALA----NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA 204 (218)
T ss_pred hhhcCHHHHHHHHHHHHHc----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 3568999999999887665 367899999999999999999999999988633478899999998543
No 123
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=2.3e-07 Score=91.08 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=59.2
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
..|||||+.+++||..++ .+.++++||||+++||..++..+...|.++..+.+.-+|++||+........++
T Consensus 127 ~~LS~G~~qrv~ia~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 127 GELSGGERQRVALARVLV----RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 468999999999998776 467899999999999999999999999887644578999999998544343444
No 124
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=1.8e-07 Score=93.59 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
+..|||||+++++||..|+ .+.+++++|||+++||+.++..+.+.|.++....+.-||++||+........+
T Consensus 134 ~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d 205 (235)
T cd03261 134 PAELSGGMKKRVALARALA----LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIAD 205 (235)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcC
Confidence 4578999999999987776 36789999999999999999999999988763347889999999854333333
No 125
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=2.4e-07 Score=87.23 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++.. .+..+|++||+........+
T Consensus 96 LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th~~~~~~~~~d 163 (173)
T cd03230 96 LSGGMKQRLALAQALL----HDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILEEAERLCD 163 (173)
T ss_pred cCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhCC
Confidence 9999999999998776 46789999999999999999999999998863 47899999999854443443
No 126
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.42 E-value=1.9e-07 Score=92.08 Aligned_cols=72 Identities=24% Similarity=0.226 Sum_probs=58.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++. ..+.-+|++||+........+.
T Consensus 135 ~~~LS~G~~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~tH~~~~~~~~~d~ 206 (214)
T TIGR02673 135 PEQLSGGEQQRVAIARAIV----NSPPLLLADEPTGNLDPDLSERILDLLKRLN-KRGTTVIVATHDLSLVDRVAHR 206 (214)
T ss_pred hhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCE
Confidence 3568999999999998776 3668999999999999999999999998875 3578899999998544444433
No 127
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=2.3e-07 Score=93.10 Aligned_cols=73 Identities=27% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.+++++|||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 134 ~~~LS~G~~qrl~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 206 (239)
T cd03296 134 PAQLSGGQRQRVALARALAV----EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADR 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 35689999999999877763 67899999999999999999999999888643477899999998543333333
No 128
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=2.2e-07 Score=91.90 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=58.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++..+.+.-||++||+........++
T Consensus 129 ~~~LS~G~~qr~~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~ 201 (220)
T cd03265 129 VKTYSGGMRRRLEIARSLV----HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDR 201 (220)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4579999999999987666 467899999999999999999999989887633377899999988644443443
No 129
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.42 E-value=3e-07 Score=89.14 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++. ..+.-+|++||+......+.++
T Consensus 123 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 123 VAQLSAGQQRRVALARLLL----SGRPLWILDEPTTALDKAGVARFAEAMAGHC-ARGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCchhhhhccce
Confidence 4568999999999987766 3678999999999999999999999888875 3577899999998755555433
No 130
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.42 E-value=2.1e-07 Score=91.82 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++. +.+++++|||+++||+.++..+.+.|.++. ..+..+|++||+........+++
T Consensus 140 ~~~LSgG~~qrv~laral~~----~p~llllDEP~~gLD~~~~~~~~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~i 212 (224)
T cd03220 140 VKTYSSGMKARLAFAIATAL----EPDILLIDEVLAVGDAAFQEKCQRRLRELL-KQGKTVILVSHDPSSIKRLCDRA 212 (224)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCCEE
Confidence 45799999999998876653 678999999999999999999999998876 34789999999986444444443
No 131
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.42 E-value=3.1e-07 Score=85.08 Aligned_cols=71 Identities=28% Similarity=0.366 Sum_probs=60.7
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
..||||++.+++|+..++.....+.++++||||+.++|+..+..+...|.++... ++++|++||+......
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~ 146 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAEL 146 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHh
Confidence 3489999999999998887666688999999999999999999888888887634 7899999999864443
No 132
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.41 E-value=4.3e-07 Score=84.60 Aligned_cols=66 Identities=24% Similarity=0.351 Sum_probs=57.2
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
.+..|||||+++++||=.++ ....++|+||++++||..+-..+.++|.++-+..+.=||||||+-.
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~----~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~ 203 (252)
T COG1124 138 RPHELSGGQRQRIAIARALI----PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA 203 (252)
T ss_pred CchhcChhHHHHHHHHHHhc----cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH
Confidence 35679999999999986654 3456889999999999999999999999998778889999999874
No 133
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.41 E-value=2.5e-07 Score=90.23 Aligned_cols=72 Identities=26% Similarity=0.206 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.+++++|||+++||+.++..+.+.|.++. ..+.-+|++||+........++
T Consensus 124 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sH~~~~~~~~~d~ 195 (205)
T cd03226 124 PLSLSGGQKQRLAIAAALLS----GKDLLIFDEPTSGLDYKNMERVGELIRELA-AQGKAVIVITHDYEFLAKVCDR 195 (205)
T ss_pred chhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 35789999999999877663 668999999999999999999999888875 3578899999998544333433
No 134
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=2.4e-07 Score=91.20 Aligned_cols=73 Identities=26% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.+++.+.+.-+|++||+........++
T Consensus 129 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (214)
T cd03297 129 PAQLSGGEKQRVALARALA----AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADR 201 (214)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCE
Confidence 4578999999999987775 466899999999999999999999999988744477899999998644444443
No 135
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.41 E-value=4.2e-07 Score=88.45 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=60.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceE
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1046 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1046 (1054)
+..|||||+.+++||..++ ...+++++|||+++||..++..+.+.|.++. ..+.-+|++||+......+. .++
T Consensus 127 ~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~~~--~~~ 199 (204)
T PRK13538 127 VRQLSAGQQRRVALARLWL----TRAPLWILDEPFTAIDKQGVARLEALLAQHA-EQGGMVILTTHQDLPVASDK--VRK 199 (204)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCCCEEEEEecChhhhccCC--ceE
Confidence 4568999999999887665 3678999999999999999999998888875 35778999999986444433 355
Q ss_pred Eec
Q 001556 1047 QQM 1049 (1054)
Q Consensus 1047 ~~~ 1049 (1054)
+.+
T Consensus 200 ~~~ 202 (204)
T PRK13538 200 LRL 202 (204)
T ss_pred Eec
Confidence 554
No 136
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.41 E-value=2e-07 Score=91.23 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.|++++|||+++||+.++..+...|.++. ..+..+|++||+........+.
T Consensus 124 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~tH~~~~~~~~~d~ 195 (208)
T cd03268 124 VKGFSLGMKQRLGIALALL----GNPDLLILDEPTNGLDPDGIKELRELILSLR-DQGITVLISSHLLSEIQKVADR 195 (208)
T ss_pred HhhCCHHHHHHHHHHHHHh----cCCCEEEECCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHhcCE
Confidence 4579999999999987776 3668999999999999999999988888876 3578999999998544333433
No 137
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.41 E-value=2.6e-07 Score=92.33 Aligned_cols=73 Identities=27% Similarity=0.274 Sum_probs=59.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||-.++ .+.++++||||+++||+.++..+.+.|.++....+.-||++||+........+.
T Consensus 143 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 215 (228)
T cd03257 143 PHELSGGQRQRVAIARALA----LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADR 215 (228)
T ss_pred chhcCHHHHHHHHHHHHHh----cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 4568999999999987665 367899999999999999999999999988733378999999998644434443
No 138
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.40 E-value=3.3e-07 Score=92.47 Aligned_cols=73 Identities=23% Similarity=0.177 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+.-+|++||+........+.
T Consensus 143 ~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~ 215 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALA----QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADR 215 (243)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 4578999999999997776 366899999999999999999999999887634478899999998644444433
No 139
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.40 E-value=3.9e-07 Score=91.22 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=57.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
+..|||||+.+++||..++ .++++++||||+++||+.++..+.+.|.+++...+..+|++||+.....
T Consensus 130 ~~~LS~G~~qrl~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 130 VRELNGGHRRRVEIARALL----HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 4578999999999998777 3678999999999999999999999999886445788999999986443
No 140
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=2.6e-07 Score=87.51 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=56.3
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
|||||+.+++||..++. ..++++||||+++||..++..+...|.++....+..+|++||+........
T Consensus 101 lS~G~~qr~~la~al~~----~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 168 (178)
T cd03229 101 LSGGQQQRVALARALAM----DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA 168 (178)
T ss_pred CCHHHHHHHHHHHHHHC----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 99999999999877763 678999999999999999999999998886333689999999985443333
No 141
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=2.1e-07 Score=91.28 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=58.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.+++++|||+++||+.++..+...|.++. ..+.-||++||+........++
T Consensus 126 ~~~LS~G~~qrl~la~al~~----~p~~lllDEP~~~LD~~~~~~~~~~l~~~~-~~~~tii~~sH~~~~~~~~~d~ 197 (210)
T cd03269 126 VEELSKGNQQKVQFIAAVIH----DPELLILDEPFSGLDPVNVELLKDVIRELA-RAGKTVILSTHQMELVEELCDR 197 (210)
T ss_pred HhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHhhhE
Confidence 45689999999999877763 668999999999999999999989888876 3578899999998644443433
No 142
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.39 E-value=0.0058 Score=65.66 Aligned_cols=17 Identities=6% Similarity=-0.250 Sum_probs=8.6
Q ss_pred cCCCceeechhhhhcch
Q 001556 990 TEAPFRAMDEFDVFMDA 1006 (1054)
Q Consensus 990 ~~~p~~v~DE~~~~lD~ 1006 (1054)
.+.|-|-|||=+...+.
T Consensus 498 ~~l~~~~l~~~~~~~~~ 514 (546)
T PF07888_consen 498 QPLGHYSLCEQGQPGSL 514 (546)
T ss_pred CCCCCcCcccCCCCCCC
Confidence 34445556665544443
No 143
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.39 E-value=3.2e-07 Score=86.44 Aligned_cols=68 Identities=26% Similarity=0.232 Sum_probs=58.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
++.||||+|++++||=.++ ....+++|||||++||.-.|..+-+.|.+++...+.-+++|||.-...+
T Consensus 128 P~qLSGGMrQRVaiARAL~----~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv 195 (248)
T COG1116 128 PHQLSGGMRQRVAIARALA----TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV 195 (248)
T ss_pred ccccChHHHHHHHHHHHHh----cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 6789999999999986665 3456778999999999999999999999999888899999999875433
No 144
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.39 E-value=3.9e-07 Score=89.43 Aligned_cols=76 Identities=25% Similarity=0.292 Sum_probs=64.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceE
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1046 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1046 (1054)
++.||||.++++.+|+.+| ....++|-|||+++||......++++|.++.+..++=+|+|||+-.......+++-|
T Consensus 151 PhelSGGMrQRV~IAmala----~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~V 226 (316)
T COG0444 151 PHELSGGMRQRVMIAMALA----LNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV 226 (316)
T ss_pred CcccCCcHHHHHHHHHHHh----CCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEE
Confidence 5779999999999998776 345678899999999999999999999999877899999999998766666665443
No 145
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=3.9e-07 Score=90.99 Aligned_cols=69 Identities=23% Similarity=0.212 Sum_probs=57.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
+..|||||+.+++||..++. +.+++++|||+++||+.++..+...|.++....+.-+|++||+......
T Consensus 143 ~~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 143 PSELSGGERQRVAIARALVN----NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 35689999999999877763 6689999999999999999999999988763457899999999864433
No 146
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.39 E-value=2.7e-07 Score=91.83 Aligned_cols=71 Identities=24% Similarity=0.292 Sum_probs=57.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.|++++|||+++||+.++..+.+.|.++. .. .-+|++||+........+.
T Consensus 139 ~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 139 ALGLSGGQQQRLCLARALA----NEPEVLLLDEPTSALDPISTAKIEELIAELK-KE-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-hC-cEEEEEeccHHHHHHhCCE
Confidence 4679999999999987666 3678999999999999999999999999886 23 7899999998544444443
No 147
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.39 E-value=0.0051 Score=68.03 Aligned_cols=285 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcchHH
Q 001556 635 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDE 714 (1054)
Q Consensus 635 ~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 714 (1054)
.++....-++++++.=...+..+...+++++.+.+.+.+++.....+....+......++-+.-.-+- .+...+.
T Consensus 255 ~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEm-----AEERaes 329 (1243)
T KOG0971|consen 255 KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEM-----AEERAES 329 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Q 001556 715 ISQEISNIQEEIQEKEIILEKLQFSMNEA--------EAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSE 786 (1054)
Q Consensus 715 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 786 (1054)
++.++..+..++++++..++-++.++..- .-+..+++.+-..+++.+-.++.-...-......+..++....
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~ 409 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKN 409 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 001556 787 SEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQY 866 (1054)
Q Consensus 787 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~ 866 (1054)
.++.++.... +.+..++..++..+.++..++....-.-.....-.+. ..++++-...+++--..+..++.-.
T Consensus 410 sE~~eL~r~k-E~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdk-------nlnlEekVklLeetv~dlEalee~~ 481 (1243)
T KOG0971|consen 410 SELEELRRQK-ERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDK-------NLNLEEKVKLLEETVGDLEALEEMN 481 (1243)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhh-------ccCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Q 001556 867 SESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWG---KFQRNATLLKRQLTWQFNGHLG 932 (1054)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~f~~l~~ 932 (1054)
....+.-.+.--.+..+++.+......+...++...+.+-.+.. +|+....++.+.+...-+..+.
T Consensus 482 EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~S 550 (1243)
T KOG0971|consen 482 EQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQES 550 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
No 148
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=6.6e-07 Score=91.35 Aligned_cols=69 Identities=22% Similarity=0.165 Sum_probs=59.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
...||||++.+++||..+++..+.+.+++|+|||+++||+.....+...|.++. .+.++|++||++...
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~--~~~tii~isH~~~~~ 236 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS--RSHQVLCITHLPQVA 236 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEechHHHH
Confidence 456999999999999877766567889999999999999999998888888876 578999999998643
No 149
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.38 E-value=3.3e-07 Score=90.26 Aligned_cols=73 Identities=27% Similarity=0.276 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 128 ~~~LS~G~~qr~~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 128 PKQLSGGQRQRVALGRAIV----REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 3578999999999997776 366899999999999999999999999888644478999999988543343433
No 150
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.38 E-value=3.2e-07 Score=90.40 Aligned_cols=72 Identities=24% Similarity=0.243 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.+++++|||+++||+.++..+...|.++. ..+..||++||+........++
T Consensus 133 ~~~LS~G~~qrv~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tvi~~sh~~~~~~~~~d~ 204 (213)
T cd03262 133 PAQLSGGQQQRVAIARALAM----NPKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMTMVVVTHEMGFAREVADR 204 (213)
T ss_pred ccccCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCE
Confidence 45789999999998876663 568999999999999999999999998886 3578899999998644444443
No 151
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.38 E-value=3.3e-07 Score=91.74 Aligned_cols=72 Identities=22% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.+++++|||+++||..++..+.+.|.++. ..+.-+|++||+........++
T Consensus 131 ~~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~tii~~sH~~~~~~~~~d~ 202 (232)
T cd03218 131 ASSLSGGERRRVEIARALAT----NPKFLLLDEPFAGVDPIAVQDIQKIIKILK-DRGIGVLITDHNVRETLSITDR 202 (232)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 45789999999999877763 668999999999999999999999888876 3577899999998544444444
No 152
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=3.7e-07 Score=91.04 Aligned_cols=73 Identities=21% Similarity=0.224 Sum_probs=59.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++..+.+..+|++||+........++
T Consensus 127 ~~~LS~G~~qrv~laral~----~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 199 (232)
T PRK10771 127 PGQLSGGQRQRVALARCLV----REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPR 199 (232)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 3468999999999997766 367899999999999999999999999887644478999999999644444444
No 153
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.37 E-value=3.3e-07 Score=91.16 Aligned_cols=73 Identities=23% Similarity=0.254 Sum_probs=58.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||..++..+...|.++....+.-||++||+........++
T Consensus 123 ~~~LS~G~~qrv~laral~----~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 195 (230)
T TIGR02770 123 PFQLSGGMLQRVMIALALL----LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADE 195 (230)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4578999999999987776 356899999999999999999999999888633478899999998544343433
No 154
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.37 E-value=4.9e-07 Score=84.15 Aligned_cols=76 Identities=28% Similarity=0.336 Sum_probs=61.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.++.||||+++++.++=.+| ...|++.+||||++|||.+|...=+.+.++-+.-+.-+||+||.-.....-++++.
T Consensus 132 yP~eLSGGQQQRVGv~RALA----adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~ 207 (309)
T COG1125 132 YPHELSGGQQQRVGVARALA----ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA 207 (309)
T ss_pred CchhcCcchhhHHHHHHHHh----cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEE
Confidence 35789999999999987776 34677789999999999999888777777766788999999998766666555543
No 155
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=3.3e-07 Score=91.64 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=59.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 138 ~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 210 (233)
T cd03258 138 PAQLSGGQKQRVGIARALA----NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDR 210 (233)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 4568999999999987765 467899999999999999999999999887644478999999998644444444
No 156
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=3.5e-07 Score=92.52 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. .+..||++||+........++
T Consensus 144 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivtH~~~~~~~~~d~ 214 (250)
T PRK14245 144 AFALSGGQQQRLCIARAMA----VSPSVLLMDEPASALDPISTAKVEELIHELK--KDYTIVIVTHNMQQAARVSDK 214 (250)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHhhCCE
Confidence 5678999999999997775 4678999999999999999999999999885 578999999998644444444
No 157
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.37 E-value=3.3e-07 Score=91.30 Aligned_cols=67 Identities=22% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..|+ .+.++++||||+++||+.++..+...|.++....+.-||++||+....
T Consensus 144 ~~~LS~Ge~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 144 PAQLSGGEQQRVALARAFN----GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA 210 (228)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 3568999999999987776 367899999999999999999999999888634478999999998644
No 158
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.37 E-value=2.9e-07 Score=91.09 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. ..+.-+|++||+........++
T Consensus 134 ~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~tH~~~~~~~~~d~ 205 (218)
T cd03266 134 VGGFSTGMRQKVAIARALV----HDPPVLLLDEPTTGLDVMATRALREFIRQLR-ALGKCILFSTHIMQEVERLCDR 205 (218)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhcCE
Confidence 4578999999999987775 4678999999999999999999999998885 4578999999998544444433
No 159
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.36 E-value=3.5e-07 Score=91.84 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++. ..+.-+|++||+........++
T Consensus 141 ~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~vsH~~~~~~~~~d~ 212 (236)
T cd03219 141 AGELSYGQQRRLEIARALA----TDPKLLLLDEPAAGLNPEETEELAELIRELR-ERGITVLLVEHDMDVVMSLADR 212 (236)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhCCE
Confidence 4678999999999987776 3678999999999999999999999998876 3678899999998644444444
No 160
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.36 E-value=3.4e-07 Score=90.73 Aligned_cols=71 Identities=25% Similarity=0.273 Sum_probs=58.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..|+ .+.+++++|||+++||+.++..+...|.++. .+.-+|++||+........+.
T Consensus 131 ~~~LS~G~~qrv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sH~~~~~~~~~d~ 201 (220)
T cd03263 131 ARTLSGGMKRKLSLAIALI----GGPSVLLLDEPTSGLDPASRRAIWDLILEVR--KGRSIILTTHSMDEAEALCDR 201 (220)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEECCCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhcCE
Confidence 4578999999999987776 4778999999999999999999999998886 458899999998543333443
No 161
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.36 E-value=3.5e-07 Score=91.18 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=59.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.++++||||+++||+.++..+.+.|.++....+.-+|++||+........++
T Consensus 151 ~~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 223 (236)
T cd03267 151 VRQLSLGQRMRAEIAAALLH----EPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR 223 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence 45689999999999877764 56899999999999999999999999988644478899999998644444443
No 162
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.36 E-value=3.4e-07 Score=93.38 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=57.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++....+.-||++||+......
T Consensus 141 ~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~ 209 (269)
T PRK11831 141 PSELSGGMARRAALARAIA----LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLS 209 (269)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH
Confidence 4579999999999997776 35689999999999999999999999988763347899999998643333
No 163
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.36 E-value=6.9e-07 Score=87.09 Aligned_cols=77 Identities=22% Similarity=0.203 Sum_probs=60.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceE
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1046 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1046 (1054)
+..|||||+.+++||..++. +.+++++|||+++||...+..+.+.|.++. ..+.-+|++||+..... . -.+
T Consensus 125 ~~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~-~---~~~ 195 (207)
T PRK13539 125 FGYLSAGQKRRVALARLLVS----NRPIWILDEPTAALDAAAVALFAELIRAHL-AQGGIVIAATHIPLGLP-G---ARE 195 (207)
T ss_pred hhhcCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCchhhc-c---CcE
Confidence 35689999999998876653 578999999999999999999999998875 45789999999985333 2 334
Q ss_pred EecCCC
Q 001556 1047 QQMAAP 1052 (1054)
Q Consensus 1047 ~~~~~~ 1052 (1054)
+.+..|
T Consensus 196 ~~~~~~ 201 (207)
T PRK13539 196 LDLGPF 201 (207)
T ss_pred EeecCc
Confidence 455544
No 164
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7.3e-07 Score=94.59 Aligned_cols=68 Identities=28% Similarity=0.347 Sum_probs=58.6
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
..|||||+++++||=.| ..++|+++||||++++|.++...+.+.|.+++ ++.-+|+|||+...+..++
T Consensus 455 ~~LSgGQ~QRlaLARAl----l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~--~~ktvl~itHrl~~~~~~D 522 (559)
T COG4988 455 AGLSGGQAQRLALARAL----LSPASLLLLDEPTAHLDAETEQIILQALQELA--KQKTVLVITHRLEDAADAD 522 (559)
T ss_pred CCCCHHHHHHHHHHHHh----cCCCCEEEecCCccCCCHhHHHHHHHHHHHHH--hCCeEEEEEcChHHHhcCC
Confidence 45899999999988443 36699999999999999999999999999998 8899999999996555444
No 165
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=4.2e-07 Score=92.54 Aligned_cols=73 Identities=27% Similarity=0.303 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ ...++++||||++|||..++..+.+.|.++....+.-+|++||+........+.
T Consensus 158 ~~~LS~Gq~qrv~lAral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 158 PDELSGGMQQRVGLARALA----VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 3468999999999997776 466899999999999999999999999888644478899999988543343333
No 166
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=4.4e-07 Score=90.99 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|..+....+.-||++||+........++
T Consensus 129 ~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~ 201 (241)
T PRK14250 129 VKNLSGGEAQRVSIARTLA----NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDY 201 (241)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCE
Confidence 4579999999999997776 366899999999999999999988888887633478999999998543333333
No 167
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=4e-07 Score=89.39 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. .+.-+|++||+........++
T Consensus 128 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~vsH~~~~~~~~~d~ 198 (211)
T cd03264 128 IGSLSGGMRRRVGIAQALV----GDPSILIVDEPTAGLDPEERIRFRNLLSELG--EDRIVILSTHIVEDVESLCNQ 198 (211)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEcCCHHHHHHhCCE
Confidence 4568999999999987776 4678999999999999999999999998886 458899999988644344443
No 168
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.35 E-value=3.9e-07 Score=94.59 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||||.+++||..|+ .+.++++||||++|||+.++..+.+.|.++. ..+.-||++||+........+++
T Consensus 122 ~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~tvi~~sH~~~~~~~~~d~v 194 (302)
T TIGR01188 122 VGTYSGGMRRRLDIAASLI----HQPDVLFLDEPTTGLDPRTRRAIWDYIRALK-EEGVTILLTTHYMEEADKLCDRI 194 (302)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCEE
Confidence 4678999999999887665 3678999999999999999999999998876 45789999999985444444443
No 169
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.35 E-value=6.9e-07 Score=86.62 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=56.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
+..|||||+.+++||..++. ..|++++|||+++||+.++..+...|.++. ..+..+|++||+......
T Consensus 125 ~~~LS~G~~~rv~laral~~----~p~~lilDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 125 CGLLSSGQKRQVALLRLWMS----KAKLWLLDEPLVALDELSLLTIITKIQEHR-AKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred hhhcCHHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHH-HcCCEEEEEeCCchhccc
Confidence 35689999999999877663 668999999999999999999999998875 457899999999864433
No 170
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.35 E-value=5.7e-07 Score=77.78 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=62.5
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCC-ceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAP-FRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p-~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..|||||+++++||=.|+ +.| +++-|||+.|||...-..++++|..+-+..++-++++||.+....+++..+
T Consensus 143 yP~qLSGGEQQRVAiARAfa-----~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~ 217 (228)
T COG4181 143 YPAQLSGGEQQRVALARAFA-----GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQL 217 (228)
T ss_pred CccccCchHHHHHHHHHHhc-----CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhee
Confidence 36789999999999997766 344 556899999999999999999999988889999999999997666666443
No 171
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=4.4e-07 Score=93.25 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=60.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++.+++||-.++ ...+++|+|||+++||+.++..+.+.|.++.+..+..||++||+........+++
T Consensus 142 ~~~LSgGq~qrv~iAraL~----~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv 215 (287)
T PRK13637 142 PFELSGGQKRRVAIAGVVA----MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRI 215 (287)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4679999999999997776 3568999999999999999999999999887445889999999975444444444
No 172
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.34 E-value=4.3e-07 Score=92.51 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 147 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~ 219 (267)
T PRK15112 147 PHMLAPGQKQRLGLARALI----LRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQ 219 (267)
T ss_pred chhcCHHHHHHHHHHHHHH----hCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCE
Confidence 4579999999999997776 367899999999999999999999999988633478899999998543333333
No 173
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=5.1e-07 Score=91.94 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.++++||||+++||..++..+...|.++....+.-+|++||+........++
T Consensus 145 ~~~LSgG~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~ 217 (265)
T PRK10575 145 VDSLSGGERQRAWIAMLVAQ----DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDY 217 (265)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 35689999999999877763 67899999999999999999999999888644478899999998543343433
No 174
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.34 E-value=4.4e-07 Score=92.08 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ ...+++++|||+++||+.++..+.+.|.++. ..+..+|++||+........+++
T Consensus 150 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivsH~~~~~~~~~d~i 222 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALA----MEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSSHV 222 (257)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEE
Confidence 4678999999999987665 3668999999999999999999999988876 45899999999986444444443
No 175
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.34 E-value=4.8e-07 Score=83.92 Aligned_cols=68 Identities=25% Similarity=0.276 Sum_probs=56.0
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
|||||+.+++||-.++ .+.+++++|||+.+||..++..+.+.|.++. ..+.-+|++||+........+
T Consensus 83 LS~G~~qrl~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 83 LSVGERQMVEIARALA----RNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred cCHHHHHHHHHHHHHh----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999987665 3668999999999999999999999998885 357889999999754444333
No 176
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=4.6e-07 Score=94.41 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=61.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++++++||..++. ..+++|+|||+++||..++..+.+.|.++....+.-+|+|||+........+++
T Consensus 151 p~~LSgGq~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri 224 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIAC----RPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI 224 (326)
T ss_pred chhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46799999999999987774 567889999999999999999999999987556889999999986444445544
No 177
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=4.5e-07 Score=90.88 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+...|.++. ..+.-+|++||+........++
T Consensus 135 ~~~LS~G~~qrl~la~al~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALM----SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR-EQGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred hhhCCHHHHHHHHHHHHHH----hCCCEEEEcCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHHHHHhhCCE
Confidence 3568999999999987766 3679999999999999999999999998876 4578899999997533444444
No 178
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.34 E-value=4.2e-07 Score=86.46 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
|||||+.+++||..++. +.+++++|||+++||+.++..+.+.|.++. ..+..+|++||+........+
T Consensus 105 LS~G~~qrl~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~~~~~~d 172 (182)
T cd03215 105 LSGGNQQKVVLARWLAR----DPRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGKAVLLISSELDELLGLCD 172 (182)
T ss_pred cCHHHHHHHHHHHHHcc----CCCEEEECCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999877663 678999999999999999999999998875 347899999999754444343
No 179
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.34 E-value=4.2e-07 Score=95.16 Aligned_cols=74 Identities=30% Similarity=0.313 Sum_probs=60.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.|+ ...|+++|||||++||+..+..+.+.|.++....+.-+|++||+........+++
T Consensus 127 p~~LSGGq~QRV~lARAL~----~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 127 PDELSGGMQQRVGLARALA----AEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4468999999999998776 4679999999999999999999999998886445789999999986544444443
No 180
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=4.6e-07 Score=93.57 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=58.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. ..++++||||+++||+.++..+...|.++....+.-+|++||+........++
T Consensus 148 ~~~LS~Gq~qrv~laral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~ 220 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAM----DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADE 220 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHh----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 46799999999999876663 56899999999999999999998888887644478999999998543344444
No 181
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.34 E-value=4.6e-07 Score=89.40 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+...|.++. ..+.-+|++||+........
T Consensus 134 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~tiiivtH~~~~~~~~~ 203 (214)
T cd03292 134 PAELSGGEQQRVAIARAIV----NSPTILIADEPTGNLDPDTTWEIMNLLKKIN-KAGTTVVVATHAKELVDTTR 203 (214)
T ss_pred hhhcCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhC
Confidence 3568999999999997776 4678999999999999999999999998875 35788999999985333333
No 182
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=4.8e-07 Score=91.88 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.++++||||+++||..++..+...|.++....+.-+|++||+........+++
T Consensus 148 ~~~LSgGq~qrv~laral~----~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i 221 (261)
T PRK14258 148 ALDLSGGQQQRLCIARALA----VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFT 221 (261)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEE
Confidence 4678999999999998776 4678999999999999999999989898875445789999999986444444443
No 183
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=4.4e-07 Score=92.10 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=59.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..|+. +.+++++|||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 152 ~~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~~tiiivsH~~~~~~~~~d~i 223 (258)
T PRK14268 152 ALSLSGGQQQRLCIARTLAV----KPKIILFDEPTSALDPISTARIEDLIMNLK--KDYTIVIVTHNMQQAARISDYT 223 (258)
T ss_pred hhhCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHh--hCCEEEEEECCHHHHHHhCCEE
Confidence 56799999999999977763 568999999999999999999999998886 4789999999985444444443
No 184
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=4.3e-07 Score=91.28 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=59.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 133 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~ 205 (242)
T cd03295 133 PHELSGGQQQRVGVARALA----ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADR 205 (242)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 4578999999999887666 467899999999999999999999999888633478899999998644444444
No 185
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.33 E-value=8.2e-07 Score=78.76 Aligned_cols=67 Identities=30% Similarity=0.271 Sum_probs=58.5
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
.+-.||||.|+++.||=.+| ....|+++||||+++|.-.|+.+-.+|+++++..|.|+++|||.-..
T Consensus 129 ~i~qLSGGmrQRvGiARALa----~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE 195 (259)
T COG4525 129 YIWQLSGGMRQRVGIARALA----VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE 195 (259)
T ss_pred ceEeecchHHHHHHHHHHhh----cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence 35579999999999997776 34457889999999999999999999999999999999999998644
No 186
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.32 E-value=4.6e-07 Score=94.64 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=60.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.++ ...++++||||+++||..++..+...|.++....+.-+|++||+........+++
T Consensus 98 ~~~LSgGq~qRvalaraL~----~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i 171 (325)
T TIGR01187 98 PHQLSGGQQQRVALARALV----FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI 171 (325)
T ss_pred hhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999997776 3678999999999999999999999998876445789999999985444444443
No 187
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=4.8e-07 Score=95.99 Aligned_cols=74 Identities=30% Similarity=0.338 Sum_probs=59.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||..|+. ..++++||||+++||+.++..+.+.|.++....+.-+|++||+........+++
T Consensus 162 ~~~LSgGq~QRv~LArAL~~----~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAI----NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 35799999999999877763 668999999999999999999999998876445788999999885444444443
No 188
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=5.5e-07 Score=91.16 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+++++||..++ .+.+++++|||+++||+.++..+.+.|.++. .+..+|++||+........++
T Consensus 144 ~~~LSgG~~qrv~laral~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALA----FQPEVLLADEPTANLDPENTAKIESLFLELK--KDMTIVLVTHFPQQAARISDY 214 (250)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCE
Confidence 4679999999999997776 3678999999999999999999999998876 478899999998644343433
No 189
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=5.2e-07 Score=92.75 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=59.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||-.|+. +.++++||||+++||+.++..+...|.++. ..+..||++||+........+++
T Consensus 142 ~~~LSgGqkqrvaiA~aL~~----~p~illLDEPt~gLD~~~~~~l~~~l~~l~-~~g~til~vtHd~~~~~~~~dri 214 (288)
T PRK13643 142 PFELSGGQMRRVAIAGILAM----EPEVLVLDEPTAGLDPKARIEMMQLFESIH-QSGQTVVLVTHLMDDVADYADYV 214 (288)
T ss_pred cccCCHHHHHHHHHHHHHHh----CCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhCCEE
Confidence 46799999999999987764 668999999999999999999888888875 35789999999985443444443
No 190
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.32 E-value=5e-07 Score=90.14 Aligned_cols=74 Identities=16% Similarity=0.070 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+.-+|++||+........+++
T Consensus 129 ~~~LS~G~~qrv~la~al~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 202 (230)
T TIGR03410 129 GGDLSGGQQQQLAIARALV----TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRY 202 (230)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEE
Confidence 4568999999999887666 3678999999999999999999999898876334789999999986443334433
No 191
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.32 E-value=5e-07 Score=91.16 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=58.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..|+ .+.+++++|||+++||+.++..+.+.|.++. .+.-+|++||+........++
T Consensus 142 ~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 142 ALGLSGGQQQRLCIARALA----VEPEVLLLDEPTSALDPIATGKIEELIQELK--KKYTIVIVTHNMQQAARISDR 212 (247)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hcCeEEEEecCHHHHHHhCCE
Confidence 5679999999999987776 3668999999999999999999999998886 357899999998644444444
No 192
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.32 E-value=4.8e-07 Score=89.85 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+...|.++. ..+..+|++||+........++
T Consensus 130 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~ 201 (222)
T cd03224 130 AGTLSGGEQQMLAIARALM----SRPKLLLLDEPSEGLAPKIVEEIFEAIRELR-DEGVTILLVEQNARFALEIADR 201 (222)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEECCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhccE
Confidence 4568999999999887665 4678999999999999999999999998876 3578999999998543443433
No 193
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=5.2e-07 Score=93.59 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=59.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.|+. ..++++||||+++||+.++..+.+.|.++. ..+..||++||+........+++
T Consensus 174 ~~~LSgGqkqRvaiAraL~~----~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~-~~g~TiiivtHd~~~~~~~adri 246 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAI----QPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANNKTVFVITHTMEHVLEVADEV 246 (320)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhCCEE
Confidence 45689999999999977763 788999999999999999999999998875 45789999999986444444443
No 194
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.32 E-value=5.3e-07 Score=91.47 Aligned_cols=72 Identities=22% Similarity=0.247 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++. +.+++++|||+++||..++..+.+.|.++. .+..||++||+........+++
T Consensus 147 ~~~LSgGq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAV----EPEVLLMDEPASALDPIATQKIEELIHELK--ARYTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCeEEEEEecHHHHHHhCCEE
Confidence 46799999999998876653 668999999999999999999999998885 4689999999986444444443
No 195
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.32 E-value=7.8e-07 Score=86.15 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=54.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
+..|||||+.+++||..++ .+.++++||||+++||..++..+.+.|.++. ..+.-+|++||+..
T Consensus 125 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sH~~~ 188 (198)
T TIGR01189 125 AAQLSAGQQRRLALARLWL----SRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARGGIVLLTTHQDL 188 (198)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEEEcccc
Confidence 4568999999999886665 4678999999999999999998888888875 45778999999985
No 196
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.32 E-value=4.9e-07 Score=91.70 Aligned_cols=67 Identities=24% Similarity=0.151 Sum_probs=56.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+.-+|++||+....
T Consensus 146 ~~~LSgG~~qrv~laral~----~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~ 212 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLV----TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVA 212 (253)
T ss_pred chhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4578999999999997765 467899999999999999999999999887644578999999997533
No 197
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.32 E-value=6.4e-07 Score=91.23 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=60.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+..+|++||+........+++
T Consensus 141 ~~~LS~Gq~qrv~laral~----~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 141 VDTLSGGQRQRAWIAMVLA----QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred cccCChHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4679999999999987776 3678999999999999999999999998886334789999999986444444443
No 198
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.31 E-value=5.3e-07 Score=90.96 Aligned_cols=76 Identities=28% Similarity=0.497 Sum_probs=61.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..||||++.+++||..+++..+.++++++||||+++||+..+..+...|.++. .++++|++||.+. .....+++
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~--~~~~ii~~~h~~~-~~~~~d~i 230 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS--DGAQFITTTFRPE-LLEVADKF 230 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHH-HHhhCCEE
Confidence 4567999999999999988865556788999999999999999999988888876 4788888887764 44455443
No 199
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=5.7e-07 Score=92.46 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=60.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||-.|+. ..+++++|||+++||+.++..+.+.|.++....+..||++||+........+++
T Consensus 143 ~~~LSgGq~qrv~laraL~~----~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAM----NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred cccCCHHHHHHHHHHHHHHh----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 56789999999999877763 568999999999999999999999988886446899999999985433344443
No 200
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.31 E-value=6.6e-07 Score=88.65 Aligned_cols=70 Identities=31% Similarity=0.344 Sum_probs=57.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. .+.-+|++||+.... ...++
T Consensus 138 ~~~LSgG~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~~sH~~~~~-~~~d~ 207 (220)
T cd03245 138 GRGLSGGQRQAVALARALL----NDPPILLLDEPTSAMDMNSEERLKERLRQLL--GDKTLIIITHRPSLL-DLVDR 207 (220)
T ss_pred CccCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH-HhCCE
Confidence 5679999999999997776 3678999999999999999999999998876 347899999998643 44433
No 201
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.31 E-value=5.5e-07 Score=91.25 Aligned_cols=72 Identities=22% Similarity=0.208 Sum_probs=58.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++. ..+.-||++||+........++
T Consensus 142 ~~~LS~Gq~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tvi~~tH~~~~~~~~~d~ 213 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALA----MRPEVILFDEPTSALDPELVGEVLNTIRQLA-QEKRTMVIVTHEMSFARDVADR 213 (250)
T ss_pred hhhCChHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCE
Confidence 4678999999999998776 3568999999999999999999999888876 3478899999998544333443
No 202
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.31 E-value=9.2e-07 Score=86.75 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++. +.+++++|||+++||..++..+...|.++. ..+..+|++||+........+++
T Consensus 135 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~~~i 207 (214)
T PRK13543 135 VRQLSAGQKKRLALARLWLS----PAPLWLLDEPYANLDLEGITLVNRMISAHL-RGGGAALVTTHGAYAAPPVRTRM 207 (214)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecChhhhhhhcceE
Confidence 45699999999999877763 668999999999999999998888888876 45788999999886444444443
No 203
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=6.5e-07 Score=90.17 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||-.++ ...+++++|||+++||..++..+.+.|.++. .+..+|++||+........++
T Consensus 140 ~~~LS~G~~qrv~laral~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~tH~~~~~~~~~d~ 210 (246)
T PRK14269 140 ALALSGGQQQRLCIARALA----IKPKLLLLDEPTSALDPISSGVIEELLKELS--HNLSMIMVTHNMQQGKRVADY 210 (246)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHhhCcE
Confidence 4569999999999987665 3678999999999999999999999888876 578999999998644444443
No 204
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=5.2e-07 Score=93.97 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=61.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||..|+. ..+++|+||++++||..++..++++|.++....+.-+|+|||+........+++
T Consensus 152 p~~LSgGq~QRv~iArAL~~----~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 PHMFSGGQRQRIAIARALML----DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred CccCCHHHHHHHHHHHHHHc----CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 46799999999999987774 457899999999999999999999999887556889999999986444444443
No 205
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.31 E-value=5.9e-07 Score=83.36 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=54.0
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
|||||+.+++||..++. ..+++++|||+++||..++..+.+.|.++....+.-+|++||+.....
T Consensus 72 LSgGq~qrv~laral~~----~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 72 LSGGELQRVAIAAALLR----NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred CCHHHHHHHHHHHHHhc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 99999999999877763 568999999999999999999999888876332378999999985433
No 206
>PRK10908 cell division protein FtsE; Provisional
Probab=98.30 E-value=6.3e-07 Score=88.77 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ ...+++++|||+++||+.++..+...|.++. ..+.-+|++||+........++
T Consensus 135 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~ 206 (222)
T PRK10908 135 PIQLSGGEQQRVGIARAVV----NKPAVLLADEPTGNLDDALSEGILRLFEEFN-RVGVTVLMATHDIGLISRRSYR 206 (222)
T ss_pred chhCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 4578999999999987776 3568999999999999999999999888875 3578999999998544443433
No 207
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=5.9e-07 Score=92.48 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=60.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||-.|+ ...+++++|||+++||+..+..+.+.|.++....+.-||++||+........+++
T Consensus 143 ~~~LSgGq~qrv~lAraL~----~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 PFELSGGQMRRVAIAGVLA----MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4679999999999987776 4678999999999999999999999998886445789999999986444444443
No 208
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.30 E-value=6.6e-07 Score=91.35 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=59.1
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.+..||||+|.+++||..|+ ..++++|||||++|||+..+..+.+.|.+++...+.=||+.||.........+.+.
T Consensus 133 ~~~~lS~G~kqrl~ia~aL~----~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~ 208 (293)
T COG1131 133 KVRTLSGGMKQRLSIALALL----HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208 (293)
T ss_pred chhhcCHHHHHHHHHHHHHh----cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence 36678999999999997665 34489999999999999999999999999983333567777777755554444443
Q ss_pred E
Q 001556 1046 K 1046 (1054)
Q Consensus 1046 v 1046 (1054)
+
T Consensus 209 i 209 (293)
T COG1131 209 I 209 (293)
T ss_pred E
Confidence 3
No 209
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.30 E-value=5.5e-07 Score=93.52 Aligned_cols=72 Identities=24% Similarity=0.249 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||++|||+.++..+.+.|.++. ..+.-||++||+........++
T Consensus 133 ~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~til~~sH~~~~~~~~~d~ 204 (303)
T TIGR01288 133 VALLSGGMKRRLTLARALI----NDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAERLCDR 204 (303)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCE
Confidence 4579999999999997776 4668999999999999999999999999886 4578899999998644444443
No 210
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.30 E-value=7.7e-07 Score=88.12 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+..+|++||+....
T Consensus 135 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 135 IAELSGGEKQRISLIRNLQ----FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI 201 (225)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH
Confidence 4678999999999887666 467899999999999999999988998887644578999999998543
No 211
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.30 E-value=6.2e-07 Score=90.76 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||-.++ .+.++++||||+++||..++..+...|.++.+..+..||++||+........++
T Consensus 138 ~~~LS~Gq~qrv~laral~----~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~ 210 (254)
T PRK10418 138 PFEMSGGMLQRMMIALALL----CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADD 210 (254)
T ss_pred CcccCHHHHHHHHHHHHHh----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCE
Confidence 4678999999999987776 466899999999999999999999999888644578999999998543333333
No 212
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.30 E-value=6.9e-07 Score=90.77 Aligned_cols=73 Identities=21% Similarity=0.122 Sum_probs=59.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..|+ .+.+++++|||+++||+.++..+.+.|.++....+.-+|++||+........++
T Consensus 149 ~~~LS~Gq~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~ 221 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLV----THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHR 221 (258)
T ss_pred CccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 4679999999999997775 467899999999999999999988888887644478999999998644434443
No 213
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.30 E-value=5.5e-07 Score=90.27 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=58.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+.-+|++||+........++
T Consensus 118 ~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~ 190 (251)
T PRK09544 118 MQKLSGGETQRVLLARALL----NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDE 190 (251)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 4679999999999987776 367899999999999999999988888887633378899999998643333333
No 214
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.30 E-value=5.9e-07 Score=93.51 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=60.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||||++++||-.|+ ...+++++|||+++||+.++..+...|.++.+..+.-+|+|||+........+++
T Consensus 138 ~~~LSgGqkQRV~IARAL~----~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v 211 (343)
T TIGR02314 138 PSNLSGGQKQRVAIARALA----SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211 (343)
T ss_pred hhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999998777 3568889999999999999999999999887445789999999875444444444
No 215
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=6e-07 Score=90.88 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++. +.++++||||+++||..++..+.+.|.++. .+..+|++||+........+.+
T Consensus 144 ~~~LS~Gq~qr~~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tili~sH~~~~~~~~~d~i 215 (250)
T PRK14262 144 GTRLSGGQQQRLCIARALAV----EPEVILLDEPTSALDPIATQRIEKLLEELS--ENYTIVIVTHNIGQAIRIADYI 215 (250)
T ss_pred hhhcCHHHHHHHHHHHHHhC----CCCEEEEeCCccccCHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhCCEE
Confidence 56789999999999877763 678999999999999999999999998886 4689999999986444444443
No 216
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.30 E-value=5.3e-07 Score=89.41 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++. ..+..+|++||+........++
T Consensus 122 ~~~LS~G~~~rv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~L~~~~-~~~~tiii~sH~~~~~~~~~d~ 193 (223)
T TIGR03740 122 AKQFSLGMKQRLGIAIALL----NHPKLLILDEPTNGLDPIGIQELRELIRSFP-EQGITVILSSHILSEVQQLADH 193 (223)
T ss_pred HhhCCHHHHHHHHHHHHHh----cCCCEEEECCCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHhcCE
Confidence 4568999999999987666 3668999999999999999999999998876 4578899999998644344444
No 217
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=6.9e-07 Score=90.59 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||-.++ ...++++||||+++||..++..+.+.|.++. .+.-+|++||+........+++
T Consensus 148 ~~~LSgG~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tvii~sH~~~~~~~~~d~i 219 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLA----IEPNVILMDEPTSALDPISTGKIEELIINLK--ESYTIIIVTHNMQQAGRISDRT 219 (254)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEE
Confidence 5679999999999887665 4668999999999999999999999999885 4688999999986444444443
No 218
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.29 E-value=9.4e-07 Score=81.92 Aligned_cols=77 Identities=26% Similarity=0.264 Sum_probs=61.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.++.||||.+-+++||=.+|+ ..+++++||||+||||.....+.+++.++-++-+.-+|+|||+-.+.....+++-
T Consensus 142 ~PsELSGGM~KRvaLARAial----dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 142 YPSELSGGMRKRVALARAIAL----DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVA 217 (263)
T ss_pred CchhhcchHHHHHHHHHHHhc----CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEE
Confidence 357799999999999987774 3478889999999999877666666666555788999999999988777776654
Q ss_pred E
Q 001556 1046 K 1046 (1054)
Q Consensus 1046 v 1046 (1054)
|
T Consensus 218 ~ 218 (263)
T COG1127 218 V 218 (263)
T ss_pred E
Confidence 3
No 219
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=6.1e-07 Score=94.41 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=60.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.|+ ...++++||||+++||...+..+...|.++.+..+.-+|++||+........+++
T Consensus 132 ~~~LSgGq~QRvalARAL~----~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i 205 (356)
T PRK11650 132 PRELSGGQRQRVAMGRAIV----REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV 205 (356)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999997776 4677889999999999999999888888876455889999999985444444443
No 220
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.29 E-value=9.9e-07 Score=83.07 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=54.5
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
|||||+.+++||..++ .+.+++++|||+++||+..+..+.+.|.++. ..+.-+|++||+....
T Consensus 97 LS~G~~qrv~la~al~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~~~~ 159 (173)
T cd03246 97 LSGGQRQRLGLARALY----GNPRILVLDEPNSHLDVEGERALNQAIAALK-AAGATRIVIAHRPETL 159 (173)
T ss_pred cCHHHHHHHHHHHHHh----cCCCEEEEECCccccCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHH
Confidence 9999999999987666 4778999999999999999999999998876 4578999999998533
No 221
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.29 E-value=7.8e-07 Score=90.60 Aligned_cols=73 Identities=26% Similarity=0.230 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. ..+++++|||+++||..++..+.+.|.++....+..||++||+........++
T Consensus 150 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQ----QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred ccccCHHHHHHHHHHHHHhc----CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 45689999999999977763 56788999999999999999999999888644578999999999543333443
No 222
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=7.2e-07 Score=90.44 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. ..+++++|||+++||+.++..+.+.|.++. ..+.-+|++||+........+.
T Consensus 136 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~l~-~~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 136 LTDLSGGQRQRAFLAMVLAQ----DTPVVLLDEPTTYLDINHQVELMRLMRELN-TQGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHhcCE
Confidence 46789999999999877763 568999999999999999999989888875 3478899999998644443433
No 223
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.29 E-value=6.4e-07 Score=88.44 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++. ..+..+|++||+........+.
T Consensus 111 ~~~LS~G~~qrv~laral~----~~p~llilDEP~~~LD~~~~~~l~~~l~~~~-~~~~tvii~sH~~~~~~~~~d~ 182 (223)
T TIGR03771 111 VGELSGGQRQRVLVARALA----TRPSVLLLDEPFTGLDMPTQELLTELFIELA-GAGTAILMTTHDLAQAMATCDR 182 (223)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCE
Confidence 4568999999999987666 3678999999999999999999999998876 4588999999998644444443
No 224
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.29 E-value=6.5e-07 Score=93.30 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=60.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||..|+ ...+++|+|||+++||..++..+.+.|.++....+.-+|+|||+........+++
T Consensus 159 p~~LSgG~~QRv~iArAL~----~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALI----LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999998776 3568899999999999999999999998886445889999999986444444443
No 225
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=6e-07 Score=92.55 Aligned_cols=74 Identities=26% Similarity=0.272 Sum_probs=59.7
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..|||||+.+++||-.++ ...++++||||+++||+.++..+.+.|.++. ..+.-||++||+........+++
T Consensus 162 ~~~~LSgGqkqrvalA~aL~----~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILA----MEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeeCHHHHHHhCCEE
Confidence 35679999999999997776 3568999999999999999999888888876 45888999999985444444443
No 226
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.29 E-value=7.4e-07 Score=90.22 Aligned_cols=77 Identities=21% Similarity=0.124 Sum_probs=59.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhh--hcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHE--MTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~--~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..|+..- -.+.++++||||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 132 ~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 210 (258)
T PRK13548 132 YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADR 210 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCE
Confidence 4679999999999998776310 0345899999999999999999999999887634577899999987544334433
No 227
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=1e-06 Score=84.63 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=54.1
Q ss_pred CCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 969 ~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
.|||||+.+++||-.++. +.+++++|||+++||..++..+...|.++. ..+..+|++||+..
T Consensus 108 ~LSgGe~qrv~la~al~~----~p~vlllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiiivtH~~~ 169 (192)
T cd03232 108 GLSVEQRKRLTIGVELAA----KPSILFLDEPTSGLDSQAAYNIVRFLKKLA-DSGQAILCTIHQPS 169 (192)
T ss_pred cCCHHHhHHHHHHHHHhc----CCcEEEEeCCCcCCCHHHHHHHHHHHHHHH-HcCCEEEEEEcCCh
Confidence 699999999999876663 668999999999999999999999988876 35789999999974
No 228
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=6.2e-07 Score=94.36 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||++++||..|+ .+.+++++|||+++||+.++..+.+.|.++....+.-+|++||+........++
T Consensus 138 ~~~LSgGq~qRv~lAraL~----~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~ 210 (343)
T PRK11153 138 PAQLSGGQKQRVAIARALA----SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDR 210 (343)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4578999999999987765 467899999999999999999999999988644478899999998543343433
No 229
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.29 E-value=6.9e-07 Score=90.48 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=58.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+..+|++||+........++
T Consensus 144 ~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 216 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALA----MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADR 216 (252)
T ss_pred hhhcCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 3568999999999997776 366889999999999999999999999887633478999999998543333443
No 230
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=7.6e-07 Score=91.03 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=58.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++. ..+.-+|++||+........++
T Consensus 134 ~~~LSgG~~qrl~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~d~ 205 (271)
T PRK13638 134 IQCLSHGQKKRVAIAGALV----LQARYLLLDEPTAGLDPAGRTQMIAIIRRIV-AQGNHVIISSHDIDLIYEISDA 205 (271)
T ss_pred chhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 4579999999999987776 4678999999999999999999999998876 3477899999987543333433
No 231
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=7e-07 Score=90.76 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=58.9
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..|||||+.+++||..++. +.++++||||+++||..++..+...|.++. .+..+|++||+........+++
T Consensus 152 ~~~~LS~Gq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivtH~~~~~~~~~d~i 224 (259)
T PRK14274 152 QALSLSGGQQQRLCIARALAT----NPDVLLMDEPTSALDPVSTRKIEELILKLK--EKYTIVIVTHNMQQAARVSDQT 224 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhCCEE
Confidence 356789999999998876663 668999999999999999999999888876 4789999999985433444443
No 232
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=6.7e-07 Score=90.48 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=58.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+...|.++. .+..+|++||+........+++
T Consensus 145 ~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~L~~~~--~~~tiiivsH~~~~~~~~~d~v 216 (251)
T PRK14270 145 ALKLSGGQQQRLCIARTIA----VKPDVILMDEPTSALDPISTLKIEDLMVELK--KEYTIVIVTHNMQQASRVSDYT 216 (251)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCeEEEEEcCHHHHHHhcCEE
Confidence 5678999999999998776 3678999999999999999999999998886 4588999999985433334443
No 233
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.28 E-value=7.4e-07 Score=90.54 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++. .+..+|++||+........++
T Consensus 154 ~~~LS~Gq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tiii~sH~~~~~~~~~d~ 224 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIA----IRPEVLLLDEPCSALDPISTGRIEELITELK--QDYTVVIVTHNMQQAARCSDY 224 (260)
T ss_pred CCCCCHHHHHHHHHHHHHH----CCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCE
Confidence 4578999999999987776 3678999999999999999999999999886 467899999998544444443
No 234
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=75.55 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=59.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceE
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1046 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1046 (1054)
+..|||||+++++|+=-+- +. .-+++|||++++||+.|.+.+-+++.++.+.++.=++-|||.+.-..+.+ -++
T Consensus 131 it~lSGGE~QriAliR~Lq---~~-P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha--~k~ 204 (223)
T COG4619 131 ITELSGGEKQRIALIRNLQ---FM-PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHA--DKV 204 (223)
T ss_pred hhhccchHHHHHHHHHHhh---cC-CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhh--heE
Confidence 5679999999999873221 22 22557999999999999999999999998888888999999996534333 355
Q ss_pred EecCC
Q 001556 1047 QQMAA 1051 (1054)
Q Consensus 1047 ~~~~~ 1051 (1054)
+++.+
T Consensus 205 itl~~ 209 (223)
T COG4619 205 ITLQP 209 (223)
T ss_pred EEecc
Confidence 55544
No 235
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.28 E-value=6.6e-07 Score=94.46 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=60.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.|+. ..++++||||+++||...+..+...|.++.+..+.-+|++||+........+++
T Consensus 142 p~~LSgGq~QRVaLARaL~~----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri 215 (375)
T PRK09452 142 PHQLSGGQQQRVAIARAVVN----KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215 (375)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 45799999999999977763 457889999999999999999888888887555899999999986544444443
No 236
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.28 E-value=7.5e-07 Score=91.03 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. ..+.-||++||+........+++
T Consensus 140 ~~~LSgG~~qrv~laraL~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~-~~g~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 140 IGELSGGQKKRVFLARAIA----QQGQVILLDEPFTGVDVKTEARIISLLRELR-DEGKTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCCEE
Confidence 4569999999999997776 3678999999999999999999999998876 45788999999985443444443
No 237
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.27 E-value=1.3e-06 Score=85.36 Aligned_cols=81 Identities=21% Similarity=0.117 Sum_probs=63.1
Q ss_pred CCCCCCCChhhHHHHHHHHHhhh----h--cCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHE----M--TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~----~--~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
.+..|||||+.+++||..++..- . .+.++++||||+++||+..+..+...|.++. ..+.-+|++||+......
T Consensus 120 ~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~-~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 120 PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIR-TENRMVGVISHVEELKER 198 (213)
T ss_pred CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECchHHHHh
Confidence 35679999999999999988532 1 2456889999999999999988888888775 347789999999865555
Q ss_pred CCCCceEE
Q 001556 1040 QGERIKKQ 1047 (1054)
Q Consensus 1040 ~~~~~~v~ 1047 (1054)
+.+.+.|.
T Consensus 199 ~~~~i~~~ 206 (213)
T cd03279 199 IPQRLEVI 206 (213)
T ss_pred hCcEEEEE
Confidence 55555553
No 238
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.27 E-value=8e-07 Score=90.17 Aligned_cols=72 Identities=24% Similarity=0.277 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.++++||||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 146 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~~sH~~~~~~~~~d~i 217 (252)
T PRK14239 146 ALGLSGGQQQRVCIARVLA----TSPKIILLDEPTSALDPISAGKIEETLLGLK--DDYTMLLVTRSMQQASRISDRT 217 (252)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCccccCHHHHHHHHHHHHHHh--hCCeEEEEECCHHHHHHhCCEE
Confidence 4679999999999997776 4668999999999999999999999898876 4688999999985433444443
No 239
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.27 E-value=7.5e-07 Score=89.52 Aligned_cols=72 Identities=25% Similarity=0.261 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ ...+++++|||+++||..++..+.+.|.++. ..+.-+|++||+........++
T Consensus 134 ~~~LS~G~~qrv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~ 205 (240)
T PRK09493 134 PSELSGGQQQRVAIARALA----VKPKLMLFDEPTSALDPELRHEVLKVMQDLA-EEGMTMVIVTHEIGFAEKVASR 205 (240)
T ss_pred hhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCE
Confidence 3568999999999997776 3668999999999999999999999888876 4578899999998644343343
No 240
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=7.9e-07 Score=90.40 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=58.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++....+..+|++||+........++
T Consensus 151 ~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMV----TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 4578999999999987665 466899999999999999999999999887633478999999998644443444
No 241
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.27 E-value=8.7e-07 Score=89.71 Aligned_cols=71 Identities=23% Similarity=0.269 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.+++++|||+++||..++..+...|.++. .+..||++||+........++
T Consensus 144 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14240 144 ALGLSGGQQQRLCIARALAV----EPEVLLMDEPTSALDPISTLKIEELIQELK--KDYTIVIVTHNMQQASRISDK 214 (250)
T ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEEeCHHHHHhhCCE
Confidence 56799999999999977663 668999999999999999999989888875 478999999998543443444
No 242
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.27 E-value=0.0034 Score=67.33 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001556 197 HLNKGDALVLELEATIKPTEKELSELQRKIRNM 229 (1054)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 229 (1054)
.+..+.+.+...-.++..|+.+-..|..++..+
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~l 75 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLL 75 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 243
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.27 E-value=3.3e-07 Score=81.23 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=30.6
Q ss_pred EEEecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 001556 26 RLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1054)
Q Consensus 26 ~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~ 63 (1054)
.+-||+...+.++...|| +.+|+|||||||||+||+|+
T Consensus 14 sF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It 52 (249)
T COG4674 14 SFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT 52 (249)
T ss_pred EEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeec
Confidence 344666667777777775 99999999999999999985
No 244
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=7.4e-07 Score=91.73 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.++++||||+++||+.++..+...|.++. ..+.-||++||+........+.
T Consensus 143 ~~~LSgG~~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiiivsH~~~~~~~~~d~ 214 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAM----EPKILVLDEPTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADF 214 (280)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeccHHHHHHhCCE
Confidence 56799999999998877763 568999999999999999999999998876 3478899999998533333333
No 245
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=8e-07 Score=90.54 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=57.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..|+ .+.+++++|||+++||+.++..+.+.|.++. .+.-+|++||+........++
T Consensus 152 ~~~LS~G~~qrl~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~~tiiivtH~~~~~~~~~d~ 222 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIA----IEPEVILMDEPCSALDPISTLKIEETMHELK--KNFTIVIVTHNMQQAVRVSDM 222 (269)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCE
Confidence 4679999999999887666 3678999999999999999999999998875 467899999998544344444
No 246
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.27 E-value=7.1e-07 Score=94.76 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=59.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+++++||-.|+ ...++++||||+++||...+..+...|.++....+.-+|++||+........++
T Consensus 131 ~~~LSgGq~QRvaLAraL~----~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~ 203 (369)
T PRK11000 131 PKALSGGQRQRVAIGRTLV----AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 203 (369)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCE
Confidence 4579999999999998776 356899999999999999999988988888644578999999998543333433
No 247
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.27 E-value=9e-07 Score=89.78 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=60.1
Q ss_pred CCCCCCChhhHHHHHHHHHh-h---h-hcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALAL-H---E-MTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al-~---~-~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
+..|||||+.+++||..++. | . ..+.++++||||+++||+.++..+.+.|.++....+.-+|++||+........
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~ 222 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA 222 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 46789999999999987774 1 1 13558889999999999999999999999886334788999999985433334
Q ss_pred CC
Q 001556 1042 ER 1043 (1054)
Q Consensus 1042 ~~ 1043 (1054)
++
T Consensus 223 d~ 224 (272)
T PRK13547 223 DR 224 (272)
T ss_pred CE
Confidence 33
No 248
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=8.3e-07 Score=89.81 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..|+ .+.++++||||+++||..++..+.+.|.++. .+..+|++||+........++
T Consensus 147 ~~~LS~Gq~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiiisH~~~~~~~~~d~ 217 (251)
T PRK14244 147 AFELSGGQQQRLCIARAIA----VKPTMLLMDEPCSALDPVATNVIENLIQELK--KNFTIIVVTHSMKQAKKVSDR 217 (251)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHhhcCE
Confidence 4569999999999887666 3668999999999999999999888888875 578999999998643333443
No 249
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.27 E-value=7.9e-07 Score=90.31 Aligned_cols=73 Identities=23% Similarity=0.243 Sum_probs=59.1
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..|||||+.+++||..++ .+.+++++|||+++||+.++..+...|.++. .+..||++||+........+++
T Consensus 145 ~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tviivsH~~~~~~~~~d~i 217 (258)
T PRK14241 145 PGGGLSGGQQQRLCIARAIA----VEPDVLLMDEPCSALDPISTLAIEDLINELK--QDYTIVIVTHNMQQAARVSDQT 217 (258)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEE
Confidence 35679999999999987766 3578999999999999999999999998886 4689999999986444444443
No 250
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=8.7e-07 Score=89.81 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=58.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+...|.++. .+..+|++||+......+.+++
T Consensus 146 ~~~LS~Gq~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~vsH~~~~~~~~~d~i 217 (252)
T PRK14255 146 ALSLSGGQQQRVCIARVLA----VKPDVILLDEPTSALDPISSTQIENMLLELR--DQYTIILVTHSMHQASRISDKT 217 (252)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--hCCEEEEEECCHHHHHHhCCEE
Confidence 5679999999999987766 3668999999999999999999999998886 4578999999986433444443
No 251
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.26 E-value=7.6e-07 Score=89.69 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=57.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.+++++|||+++||+.++..+.+.|.++. .+.-+|++||+........++
T Consensus 141 ~~~LS~Ge~qrv~laral~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~~sH~~~~~~~~~d~ 211 (242)
T TIGR03411 141 AGLLSHGQKQWLEIGMLLMQ----DPKLLLLDEPVAGMTDEETEKTAELLKSLA--GKHSVVVVEHDMEFVRSIADK 211 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEecCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCE
Confidence 45789999999998876653 668999999999999999999999998886 468899999988543333333
No 252
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=1.1e-06 Score=84.98 Aligned_cols=65 Identities=22% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1034 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1034 (1054)
.+..|||||+.+++||..++. ..++++||||+++||+..+..+.+.|.++.+..+..+|++|||.
T Consensus 115 ~~~~LS~Ge~qrl~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~ 179 (202)
T cd03233 115 FVRGISGGERKRVSIAEALVS----RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQA 179 (202)
T ss_pred chhhCCHHHHHHHHHHHHHhh----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 356799999999999977763 56899999999999999999999999988633356788888776
No 253
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.26 E-value=8.6e-07 Score=90.29 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. +.++++||||+++||+.++..+.+.|.++. .+.-+|++||+........++
T Consensus 161 ~~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~l~--~~~tiiivtH~~~~~~~~~d~ 231 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAV----SPEVILMDEPCSALDPIATAKVEELIDELR--QNYTIVIVTHSMQQAARVSQR 231 (267)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHh--cCCeEEEEEcCHHHHHhhCCE
Confidence 45789999999999977763 668999999999999999999999998886 467899999987544344443
No 254
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.26 E-value=9.5e-07 Score=87.75 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=55.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
+..|||||+.+++||..++ ...++++||||+++||+..+..+.+.|.++. ..+.-||++||+..
T Consensus 147 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vsH~~~ 210 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFI----ADYPILLLDEPTASLDAANRQVVVELIAEAK-ARGAALIGIFHDEE 210 (224)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHH
Confidence 5578999999999987765 3668999999999999999999999888875 45789999999974
No 255
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.3e-06 Score=91.02 Aligned_cols=68 Identities=34% Similarity=0.450 Sum_probs=57.2
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
..|||||+.+++||=.+- ...|+.++|||+.|||+.+.+.++.+|.+-+ ++.-+|+|||+......++
T Consensus 473 ~~LSGGE~rRLAlAR~LL----~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~le~~d 540 (573)
T COG4987 473 RRLSGGERRRLALARALL----HDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLERMD 540 (573)
T ss_pred CcCCchHHHHHHHHHHHH----cCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccccHhhcC
Confidence 458999999999983332 2889999999999999999999999998877 8899999999996544433
No 256
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.26 E-value=1.6e-06 Score=80.50 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=60.9
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.+..||||++.+++||..++ ...++++++||||+++||+.++..+...|.++. ..+.-||++||+... ....+ .
T Consensus 84 ~~~~LSgGq~qrl~laral~--~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tvIivSH~~~~-~~~~d--~ 157 (176)
T cd03238 84 KLSTLSGGELQRVKLASELF--SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI-DLGNTVILIEHNLDV-LSSAD--W 157 (176)
T ss_pred CcCcCCHHHHHHHHHHHHHh--hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHH-HHhCC--E
Confidence 35679999999999887555 222378999999999999999999888888875 467899999999853 34333 3
Q ss_pred EEecCC
Q 001556 1046 KQQMAA 1051 (1054)
Q Consensus 1046 v~~~~~ 1051 (1054)
|+.|.+
T Consensus 158 i~~l~~ 163 (176)
T cd03238 158 IIDFGP 163 (176)
T ss_pred EEEECC
Confidence 444443
No 257
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.26 E-value=8.5e-07 Score=90.15 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceE
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1046 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1046 (1054)
+..|||||+.+++||..++ ...+++++|||+++||..++..+.+.|.++. .+..||++||+........+++-+
T Consensus 149 ~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tvi~vtH~~~~~~~~~d~v~~ 222 (264)
T PRK14243 149 GLSLSGGQQQRLCIARAIA----VQPEVILMDEPCSALDPISTLRIEELMHELK--EQYTIIIVTHNMQQAARVSDMTAF 222 (264)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEE
Confidence 5578999999999997776 3668999999999999999999999998886 457899999998654555555433
No 258
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.26 E-value=8.9e-07 Score=92.36 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=61.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++++++||..++ ...+++|+|||+++||..++..+.+.|.++....+.-+|+|||+........+++
T Consensus 159 p~~LSgG~~QRv~IArAL~----~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALL----CRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 4679999999999998776 3558899999999999999999999999887445889999999986444445444
No 259
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.26 E-value=8.5e-07 Score=90.45 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++. .+..+|++||+........+++
T Consensus 165 ~~~LSgGe~qrv~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 165 AYGLSGGQQQRLCIARCLA----IEPDVILMDEPTSALDPISTLKVEELVQELK--KDYSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--cCCEEEEEEcCHHHHHHhCCEE
Confidence 4678999999999987775 3668999999999999999999999998886 4689999999885433344443
No 260
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.25 E-value=8e-07 Score=94.16 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=59.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+++++||..|+ ...++++||||+++||+.++..+...|.++....+.-+|++||+........+.
T Consensus 129 ~~~LSgGqkqRvalAraL~----~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~ 201 (354)
T TIGR02142 129 PGRLSGGEKQRVAIGRALL----SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADR 201 (354)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 4578999999999998776 356899999999999999999999999888744477899999998544343443
No 261
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=9.4e-07 Score=90.21 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=60.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
+..|||||+.+++||..|+ ...+++|||||+++||..++..+.+.|.++. .+.-+|++||+........+++-
T Consensus 159 ~~~LSgGq~qrv~LAraL~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tiii~sH~~~~~~~~~d~i~ 231 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIA----MKPDVLLMDEPCSALDPISTRQVEELCLELK--EQYTIIMVTHNMQQASRVADWTA 231 (274)
T ss_pred cccCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEE
Confidence 5678999999999987775 4678999999999999999999999999886 46889999999865444444443
No 262
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.25 E-value=9.4e-07 Score=89.25 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=56.0
Q ss_pred CCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 969 ~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
.|||||+.+++||..++ .+.++++||||+++||..++..+.+.|.++. ..+.-||++||+......
T Consensus 144 ~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 144 GFSGGEKKRNEILQMAL----LEPKLAILDEIDSGLDIDALKIVAEGINRLR-EPDRSFLIITHYQRLLNY 209 (243)
T ss_pred CcCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHH-HCCcEEEEEEecHHHHHh
Confidence 48999999999997776 3678999999999999999999999998876 457889999999854433
No 263
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.25 E-value=8.7e-07 Score=88.94 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=56.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+.+.|.++. .+.-+|++||+....
T Consensus 136 ~~~LSgG~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~ 200 (237)
T cd03252 136 GAGLSGGQRQRIAIARALI----HNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLSTV 200 (237)
T ss_pred CCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH
Confidence 5679999999999997776 4668999999999999999999999998886 578899999999644
No 264
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.25 E-value=1.1e-06 Score=89.60 Aligned_cols=72 Identities=24% Similarity=0.200 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+.+.|.++....+..+|++||+........+
T Consensus 149 ~~~LS~Ge~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 149 PPQLSGGQLQRVCLARALA----VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQ 220 (268)
T ss_pred CccCChHHHHHHHHHHHHh----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCC
Confidence 4568999999999988776 36688999999999999999999999988864447899999999854333333
No 265
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=2.2e-05 Score=82.87 Aligned_cols=78 Identities=21% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCCCCChhhHHHHHHHHHhhhh-----cCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC--CC
Q 001556 968 RGLSGGERSFSTLCFALALHEM-----TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV--KQ 1040 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~-----~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~--~~ 1040 (1054)
..+|+||+..++||+.+|...+ ...|+++||||+++||+.++..+++.|.. .+.|||+.||+..... ..
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~----~~~qv~it~~~~~~~~~~~~ 349 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQS----LGVQVFVTAISLDHLKEMWD 349 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhh----cCCEEEEEecChhhccchhc
Confidence 4579999999999999986432 35789899999999999988665555543 3679999999874322 22
Q ss_pred CCCceEEec
Q 001556 1041 GERIKKQQM 1049 (1054)
Q Consensus 1041 ~~~~~v~~~ 1049 (1054)
.....+..+
T Consensus 350 ~~~~~~~~~ 358 (365)
T TIGR00611 350 PNRVTIALV 358 (365)
T ss_pred ccceEEEEE
Confidence 333445555
No 266
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.25 E-value=9.5e-07 Score=89.01 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++.+++||..++ .+.++++||||+.+||+..+..+...|.++. ..+..+|++||+........+++
T Consensus 141 ~~~LS~Gq~qrv~Laral~----~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~tiIiisH~~~~i~~~~d~i 213 (264)
T PRK13546 141 VKKYSSGMRAKLGFSINIT----VNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQVRQFCTKI 213 (264)
T ss_pred cccCCHHHHHHHHHHHHHh----hCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHcCEE
Confidence 4578999999999886655 4678999999999999999988888888875 46889999999985433334443
No 267
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.25 E-value=9.1e-07 Score=94.82 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=58.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||.+++||..|+. +.++++||||+++||+.++..+...|.++. ..+.-+|++||+........++
T Consensus 141 ~~~LSGGQrQRVaLArAL~~----~P~LLLLDEPTsgLD~~sr~~LlelL~el~-~~G~TIIIVSHdl~~i~~l~Dr 212 (549)
T PRK13545 141 VKTYSSGMKSRLGFAISVHI----NPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTIFFISHSLSQVKSFCTK 212 (549)
T ss_pred cccCCHHHHHHHHHHHHHHh----CCCEEEEECCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCE
Confidence 46789999999999987763 678999999999999999999999988875 4578899999997543333333
No 268
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=8.7e-07 Score=89.17 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=56.1
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
..|||||+.+++||..++. +.+++++|||+++||+.++..+...|.++. ..+.-+|++||+......
T Consensus 140 ~~LS~G~~qrv~laral~~----~p~llilDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~~~~~~ 206 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMM----EPQVLLFDEPTAALDPEITAQIVSIIRELA-ETGITQVIVTHEVEVARK 206 (242)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHH
Confidence 5689999999999877763 678999999999999999999888888875 457889999999864333
No 269
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=8.5e-07 Score=89.98 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+...|.++. .+.-||++||+........+++
T Consensus 147 ~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~~~~~d~i 218 (253)
T PRK14267 147 PSNLSGGQRQRLVIARALA----MKPKILLMDEPTANIDPVGTAKIEELLFELK--KEYTIVLVTHSPAQAARVSDYV 218 (253)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--hCCEEEEEECCHHHHHhhCCEE
Confidence 5679999999999987765 3668999999999999999999999999886 4689999999986444444443
No 270
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.25 E-value=1.1e-06 Score=88.16 Aligned_cols=65 Identities=25% Similarity=0.257 Sum_probs=55.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. .+..+|++||+....
T Consensus 137 ~~~LS~G~~qrv~la~al~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~ 201 (238)
T cd03249 137 GSQLSGGQKQRIAIARALL----RNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTI 201 (238)
T ss_pred CccCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH
Confidence 4679999999999987765 4668999999999999999999888888875 688999999998544
No 271
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.25 E-value=1.3e-06 Score=86.75 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC-CCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV-GLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~-~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++. +.+++++|||+++||+.++..+...|.++. ..+.-+|++||+.. ......+++
T Consensus 141 ~~~LS~G~~qrl~laral~~----~p~illlDEP~~gLD~~~~~~~~~~l~~~~-~~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLW----DPKVLILDEPTSGLDSFTALNLVSTLSQLA-RRNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHh----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHhCCEE
Confidence 46799999999999877763 568999999999999999999989888875 34789999999972 344444443
No 272
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=1.7e-06 Score=88.29 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=56.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+...|.++....+.-+|++||+.....
T Consensus 140 ~~~LS~G~~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 140 PNALSGGQKQRVAIAGVLA----LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM 207 (269)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHh
Confidence 4568999999999886665 4678999999999999999999999998876334789999999985443
No 273
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=9.8e-07 Score=90.15 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=58.6
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||++.+++||..|+ .+.++++||||+++||+..+..+.+.|.++. .+.-||++||+........++
T Consensus 161 ~~~~LSgGq~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 161 SALSLSGGQQQRLCIARTLA----MKPAVLLLDEPASALDPISNAKIEELITELK--EEYSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred CcccCCHHHHHHHHHHHHHh----CCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCEEEEEEeCHHHHHHhCCE
Confidence 35679999999999997776 3678999999999999999999989888886 457899999998544444443
No 274
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=9.1e-07 Score=92.69 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=60.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++++++||..|+. ..+++|+|||+++||...+..+.++|.++....+.-+|+|||+........+++
T Consensus 156 p~~LSgG~~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 156 PYELTEGECQKVMIAIALAN----QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred chhCCHHHHHHHHHHHHHHC----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 46799999999999877763 568899999999999999999999999987445789999999975443444443
No 275
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.24 E-value=1.1e-06 Score=85.14 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=58.4
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC-CCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK-QGER 1043 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~-~~~~ 1043 (1054)
..|||||+.+++||..++ .+.|++++|||+.+||+.++..+...|.++. ..+..+|++||+...... ..++
T Consensus 103 ~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~L~~~~-~~~~tiii~sh~~~~~~~~~~d~ 174 (200)
T cd03217 103 EGFSGGEKKRNEILQLLL----LEPDLAILDEPDSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQRLLDYIKPDR 174 (200)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhhCCE
Confidence 579999999999987776 4678999999999999999999999999876 347899999999864433 3444
No 276
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.24 E-value=9.1e-07 Score=92.46 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=60.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceE
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1046 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1046 (1054)
+..||||++.+++||..|+. ..++++||||++|||+.++..+.+.|.++. ..+.-||++||+........+++.+
T Consensus 170 ~~~LS~G~kqrv~lA~aL~~----~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~-~~g~tilisSH~l~e~~~~~d~i~i 244 (340)
T PRK13536 170 VSDLSGGMKRRLTLARALIN----DPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCV 244 (340)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCEEEE
Confidence 45799999999999877663 568899999999999999999999999886 4578899999988655455555433
No 277
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=1.1e-06 Score=82.66 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=53.7
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. .+..+|++||+.....
T Consensus 97 LS~G~~~rl~la~al~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~~ 159 (171)
T cd03228 97 LSGGQRQRIAIARALL----RDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHRLSTIR 159 (171)
T ss_pred hCHHHHHHHHHHHHHh----cCCCEEEEECCCcCCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH
Confidence 9999999999987775 3668999999999999999988888888875 4688999999885443
No 278
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.24 E-value=9.3e-07 Score=90.02 Aligned_cols=73 Identities=26% Similarity=0.308 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||-.++ .+.++++||||+++||+.++..+...|.++....+.-+|++||+........++
T Consensus 148 ~~~LSgGe~qrv~laral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 148 PRQLSGGQLQRINIARALA----VKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcE
Confidence 4578999999999987765 367899999999999999999999999888743478899999998543333333
No 279
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.24 E-value=1.1e-06 Score=88.43 Aligned_cols=76 Identities=17% Similarity=0.133 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhh---hhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALH---EMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~---~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++.. ...+.+++++|||+++||+.++..+...|.++. ..+.-||++||+........+.
T Consensus 124 ~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~-~~~~tvi~~sH~~~~~~~~~d~ 202 (248)
T PRK03695 124 VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC-QQGIAVVMSSHDLNHTLRHADR 202 (248)
T ss_pred cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHhCCE
Confidence 457899999999999877731 112457999999999999999999888888876 4578899999998544444444
No 280
>PRK13409 putative ATPase RIL; Provisional
Probab=98.24 E-value=8.9e-07 Score=100.01 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=61.0
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..|||||+++++||..++ .+.++++||||++|||..++..+.+.|.+++...+.-+|++||+........++
T Consensus 450 ~~~~LSGGe~QRvaiAraL~----~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDr 523 (590)
T PRK13409 450 NVKDLSGGELQRVAIAACLS----RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDR 523 (590)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 45679999999999997776 467899999999999999999999999998754578899999997543334444
No 281
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=1e-06 Score=89.23 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=57.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. ..++++||||+++||+.++..+...|.++. .+..+|++||+...-....++
T Consensus 147 ~~~LS~G~~qrv~laral~~----~p~lllLDEP~~gLD~~~~~~l~~~l~~~~--~~~tvii~sh~~~~~~~~~d~ 217 (253)
T PRK14261 147 ALSLSGGQQQRLCIARTLAV----NPEVILMDEPCSALDPIATAKIEDLIEDLK--KEYTVIIVTHNMQQAARVSDY 217 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHh--hCceEEEEEcCHHHHHhhCCE
Confidence 45789999999998876663 678999999999999999999988888886 468999999998543333443
No 282
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=9.7e-07 Score=89.41 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..|||||+.+++||..++ .+.++++||||+++||+.++..+...|.++. .+.-+|++||+........++
T Consensus 144 ~~~~LS~Gq~qr~~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiiiisH~~~~~~~~~d~ 215 (251)
T PRK14251 144 NAQAFSGGQQQRICIARALA----VRPKVVLLDEPTSALDPISSSEIEETLMELK--HQYTFIMVTHNLQQAGRISDQ 215 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCCccCCHHHHHHHHHHHHHHH--cCCeEEEEECCHHHHHhhcCE
Confidence 34679999999999887776 3678999999999999999999999999886 468899999998643443433
No 283
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.24 E-value=9.8e-07 Score=93.30 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+++++||-.++ ...++++||||+++||+.++..+.+.|.++....+.-+|++||+........++
T Consensus 126 ~~~LSgGq~qRvalaraL~----~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~ 198 (352)
T PRK11144 126 PGSLSGGEKQRVAIGRALL----TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADR 198 (352)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCE
Confidence 4579999999999997776 356889999999999999999999999888744478899999998544444443
No 284
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=1.1e-06 Score=87.74 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=56.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||-.++ ...+++++|||+++||+.++..+.+.|..+. .+..+|++||+....
T Consensus 137 ~~~LS~G~~~rv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~ 201 (229)
T cd03254 137 GGNLSQGERQLLAIARAML----RDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLSTI 201 (229)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHH
Confidence 5679999999999997775 5678999999999999999999989988875 588999999998644
No 285
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.23 E-value=1.5e-06 Score=85.15 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=55.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
+..|||||+.+++||..|+ ...+++++|||+++||+.++..+...|.++. ..+.-+|++||+..
T Consensus 132 ~~~lS~G~~qr~~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~~ 195 (206)
T TIGR03608 132 IYELSGGEQQRVALARAIL----KDPPLILADEPTGSLDPKNRDEVLDLLLELN-DEGKTIIIVTHDPE 195 (206)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHH
Confidence 4568999999999987766 3678999999999999999999999988876 34789999999985
No 286
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.23 E-value=1.6e-06 Score=83.33 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=53.9
Q ss_pred CCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 969 ~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
.|||||+.+++||..++ .+.++++||||+.+||..++..+...|.++. ..+..+|++||+..
T Consensus 111 ~LS~G~~qrv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELV----SNPSLLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCch
Confidence 69999999999887766 3668999999999999999999988888875 45889999999874
No 287
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.23 E-value=1.6e-06 Score=83.55 Aligned_cols=79 Identities=27% Similarity=0.277 Sum_probs=68.0
Q ss_pred ccCCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 964 VRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 964 ~~~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
-..++.||||.++++.||=.|| ...+++++||+|++|||--|..+-+.|+++-..-+.-++||||.-....+..++
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla----~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALA----NDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred hcCcccccchHHHHHHHHHHHc----cCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence 3457889999999999997776 567888999999999999999999999998877788999999999878887777
Q ss_pred ceE
Q 001556 1044 IKK 1046 (1054)
Q Consensus 1044 ~~v 1046 (1054)
|.|
T Consensus 235 Iai 237 (386)
T COG4175 235 IAI 237 (386)
T ss_pred EEE
Confidence 643
No 288
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=1.4e-06 Score=87.22 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=57.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. ++..+|++||+......
T Consensus 136 ~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 136 GVKLSGGQRQRIAIARALL----KDPPILILDEATSALDTESERLVQAALERLM--KNRTTFVIAHRLSTIEN 202 (234)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHhh
Confidence 4678999999999997776 4568999999999999999999999998876 57899999999865433
No 289
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=1.3e-06 Score=89.40 Aligned_cols=67 Identities=21% Similarity=0.157 Sum_probs=57.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||-.++ ...+++++|||+++||+.++..+...|.++....+..+|++||+....
T Consensus 138 ~~~LSgGq~qrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 138 PARLSGGQKQRVAIAGAVA----MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV 204 (279)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 3578999999999987666 366899999999999999999999999888744589999999998544
No 290
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.23 E-value=1e-06 Score=92.56 Aligned_cols=74 Identities=26% Similarity=0.220 Sum_probs=60.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.|+ ...+++++|||+++||...+..+.+.|.++....+.-+|++||+........+++
T Consensus 134 ~~~LSgGq~QRvalArAL~----~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri 207 (353)
T PRK10851 134 PAQLSGGQKQRVALARALA----VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRV 207 (353)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4679999999999987765 4568899999999999999999999998887445789999999996544444443
No 291
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=1e-06 Score=90.52 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. ..+++|||||+++||...+..+.+.|.++. .+..||++||+........++
T Consensus 180 ~~~LSgGq~qrv~LAraL~~----~p~lllLDEPt~gLD~~~~~~l~~~L~~~~--~~~tvIivsH~~~~~~~~~d~ 250 (286)
T PRK14275 180 ALGLSGGQQQRLCVARTLAV----EPEILLLDEPTSALDPKATAKIEDLIQELR--GSYTIMIVTHNMQQASRVSDY 250 (286)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCE
Confidence 45789999999999877663 568999999999999999999888888876 457899999988644444444
No 292
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.23 E-value=1.1e-06 Score=87.53 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=55.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+...|.++. .+..+|++||+....
T Consensus 148 ~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~ 212 (226)
T cd03248 148 GSQLSGGQKQRVAIARALI----RNPQVLILDEATSALDAESEQQVQQALYDWP--ERRTVLVIAHRLSTV 212 (226)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEECCHHHH
Confidence 4679999999999987765 4678999999999999999999888888876 468999999998544
No 293
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=1.1e-06 Score=90.15 Aligned_cols=75 Identities=19% Similarity=0.118 Sum_probs=60.3
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..||||++.+++||-.++ ...|++|||||+++||+.++..+...|.++.+..+.-||++||+........+++
T Consensus 138 ~~~~LS~G~~qrl~laraL~----~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri 212 (283)
T PRK13636 138 PTHCLSFGQKKRVAIAGVLV----MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNV 212 (283)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 35678999999999987665 3678999999999999999999999998887444789999999986443344443
No 294
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=1.1e-06 Score=92.19 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=60.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.|+. ..++++||||+++||...+..+...|.++.+..+.-+|++||+........+++
T Consensus 134 ~~~LSgGq~QRVaLARaL~~----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i 207 (351)
T PRK11432 134 VDQISGGQQQRVALARALIL----KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTV 207 (351)
T ss_pred hhhCCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 45789999999999987763 568899999999999999999888888876455889999999996554545554
No 295
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.1e-06 Score=89.62 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=58.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||-.|+ ...+++++|||+++||..++..+...|.++. ....||++||+........++
T Consensus 161 ~~~LSgGq~qrl~LAral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tiiivsH~~~~~~~~~dr 231 (276)
T PRK14271 161 PFRLSGGQQQLLCLARTLA----VNPEVLLLDEPTSALDPTTTEKIEEFIRSLA--DRLTVIIVTHNLAQAARISDR 231 (276)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCE
Confidence 5679999999999987776 3568999999999999999999999998886 358999999998643443443
No 296
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=1.2e-06 Score=90.07 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=58.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||++.+++||..|+. ..++++||||+++||+.++..+...|.++. ..+.-||++||+........++
T Consensus 143 ~~~LSgGq~qrl~laral~~----~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-~~g~tvlivsH~~~~~~~~~d~ 214 (287)
T PRK13641 143 PFELSGGQMRRVAIAGVMAY----EPEILCLDEPAAGLDPEGRKEMMQLFKDYQ-KAGHTVILVTHNMDDVAEYADD 214 (287)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCCE
Confidence 56799999999999987774 458999999999999999999999888875 4578999999988643344443
No 297
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.2e-06 Score=88.78 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=58.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||-.++ ...++++||||+++||..++..+...|.++. .+..+|++||+........+++
T Consensus 146 ~~~LS~G~~qrl~laral~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tiiivsH~~~~~~~~~d~i 217 (252)
T PRK14256 146 AMELSGGQQQRLCIARTIA----VKPEVILMDEPASALDPISTLKIEELIEELK--EKYTIIIVTHNMQQAARVSDYT 217 (252)
T ss_pred cCcCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCcEEEEECCHHHHHhhCCEE
Confidence 5679999999999987665 3558999999999999999999999999886 4689999999986444444444
No 298
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.22 E-value=1.4e-06 Score=88.44 Aligned_cols=72 Identities=24% Similarity=0.187 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. ..++++||||+++||..++..+.+.|.++. ..+.-+|++||+........++
T Consensus 135 ~~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~~~~~~~~d~ 206 (256)
T TIGR03873 135 MSTLSGGERQRVHVARALAQ----EPKLLLLDEPTNHLDVRAQLETLALVRELA-ATGVTVVAALHDLNLAASYCDH 206 (256)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCccccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCE
Confidence 45689999999999877764 568999999999999999999989988876 4478899999998644344443
No 299
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.2e-06 Score=88.21 Aligned_cols=70 Identities=23% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|..+. ..+.-+|++||+........
T Consensus 135 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiii~sH~~~~~~~~~ 204 (241)
T PRK10895 135 GQSLSGGERRRVEIARALA----ANPKFILLDEPFAGVDPISVIDIKRIIEHLR-DSGLGVLITDHNVRETLAVC 204 (241)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhc
Confidence 4578999999999987765 3678999999999999999988888887775 45788999999984333333
No 300
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=1.2e-06 Score=89.38 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=59.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++.+++||-.|+ ...++++||||+++||+.++..+...|.++. ..+.-+|++||+........+++
T Consensus 136 ~~~LSgG~~qrv~laraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tili~tH~~~~~~~~~d~i 208 (274)
T PRK13647 136 PYHLSYGQKKRVAIAGVLA----MDPDVIVLDEPMAYLDPRGQETLMEILDRLH-NQGKTVIVATHDVDLAAEWADQV 208 (274)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCEE
Confidence 3578999999999997776 3668999999999999999999999999886 34889999999985443445443
No 301
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.22 E-value=1.8e-06 Score=76.60 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=57.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
+..|||||+++++||=.+ +...++++-|||+.||||..+..+++++.++- ..|+-|++-||....+....
T Consensus 135 P~~LSGGEQQRvaIARAi----V~~P~vLlADEPTGNLDp~~s~~im~lfeein-r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 135 PSQLSGGEQQRVAIARAI----VNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN-RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred ccccCchHHHHHHHHHHH----ccCCCeEeecCCCCCCChHHHHHHHHHHHHHh-hcCcEEEEEeccHHHHHhcc
Confidence 567999999999998433 34556778999999999999999888888864 78999999999986665544
No 302
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.22 E-value=1.1e-06 Score=92.42 Aligned_cols=74 Identities=24% Similarity=0.231 Sum_probs=60.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.|+. ..++++||||+++||...+..+...|.++.+..+.-+|++||+........+++
T Consensus 132 ~~~LSgGq~QRvaLARaL~~----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i 205 (353)
T TIGR03265 132 PGQLSGGQQQRVALARALAT----SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRI 205 (353)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 45799999999999987763 568889999999999999999888888876455889999999996544444443
No 303
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.22 E-value=1.1e-06 Score=92.49 Aligned_cols=74 Identities=28% Similarity=0.300 Sum_probs=61.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++++++||-.|+ ...++++||||+++||+..+..+.+.|.++....+.-+|+|||+........+++
T Consensus 162 ~~~LSgGq~QRV~LARALa----~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI 235 (382)
T TIGR03415 162 PGELSGGMQQRVGLARAFA----MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRI 235 (382)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 3568999999999998776 4678899999999999999999999999886445789999999986444545444
No 304
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.3e-06 Score=88.39 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=59.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||..++..+...|.++. .+..+|++||+........+++
T Consensus 144 ~~~LS~Gq~qrv~laral~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~~~~~~~i 215 (250)
T PRK14266 144 ALGLSGGQQQRLCIARTIA----VSPEVILMDEPCSALDPISTTKIEDLIHKLK--EDYTIVIVTHNMQQATRVSKYT 215 (250)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHHhhcCEE
Confidence 5678999999999987776 3668999999999999999999989998886 5789999999986555555444
No 305
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.2e-06 Score=88.53 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=58.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||..++ ...+++++|||+++||..++..+.+.|.++. ++..||++||+........+++
T Consensus 143 ~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~~~~~d~i 214 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIA----MEPDVILMDEPTSALDPIATHKIEELMEELK--KNYTIVIVTHSMQQARRISDRT 214 (249)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCCEE
Confidence 4678999999999987665 3568999999999999999999999998886 4589999999986434334443
No 306
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.2e-06 Score=88.61 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=60.2
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.+..|||||+.+++||..|+ ...++++||||++|||+.++..+.+.|.++. .+..+|++||+........+++-
T Consensus 146 ~~~~LS~G~~qrv~laral~----~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~~~d~v~ 219 (261)
T PRK14263 146 SGLSLSGGQQQRLCIARAIA----TEPEVLLLDEPCSALDPIATRRVEELMVELK--KDYTIALVTHNMQQAIRVADTTA 219 (261)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEEE
Confidence 34578999999999887665 4778999999999999999999999998885 56899999999864444444443
Q ss_pred E
Q 001556 1046 K 1046 (1054)
Q Consensus 1046 v 1046 (1054)
+
T Consensus 220 ~ 220 (261)
T PRK14263 220 F 220 (261)
T ss_pred E
Confidence 3
No 307
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=1.5e-06 Score=89.05 Aligned_cols=74 Identities=26% Similarity=0.241 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++.+++||..|+. ..+++|+|||+++||+.++..+.+.|.++....+.-||++||+........+++
T Consensus 135 ~~~LS~Gq~qrl~laraL~~----~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv 208 (277)
T PRK13652 135 PHHLSGGEKKRVAIAGVIAM----EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYI 208 (277)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 35789999999999877663 668999999999999999999889898876334789999999985443444443
No 308
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.21 E-value=1.2e-06 Score=92.23 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=60.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcC-CcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQ-GSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~-~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.|+ ...++++||||+++||...+..+...|.++.+.. +.-+|++||+........+++
T Consensus 135 ~~~LSgGq~QRvaLARAL~----~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri 209 (362)
T TIGR03258 135 PAQLSGGMQQRIAIARAIA----IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKA 209 (362)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEE
Confidence 4579999999999997776 4677889999999999999999888888876433 689999999986544444444
No 309
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=2.1e-06 Score=88.15 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=57.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
+..|||||+.+++||..|+ ...+++|+|||+++||+.++..+...|.++....+.-+|++||+......
T Consensus 142 ~~~LS~G~~qrv~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~ 210 (280)
T PRK13633 142 PHLLSGGQKQRVAIAGILA----MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE 210 (280)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc
Confidence 4578999999999887665 45689999999999999999999998888864458899999999865443
No 310
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.3e-06 Score=88.64 Aligned_cols=71 Identities=25% Similarity=0.287 Sum_probs=57.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++. ..+++++|||+++||..++..+...|.++. .+..+|++||+........++
T Consensus 146 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~~~~~d~ 216 (252)
T PRK14272 146 ATGLSGGQQQRLCIARALAV----EPEILLMDEPTSALDPASTARIEDLMTDLK--KVTTIIIVTHNMHQAARVSDT 216 (252)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCE
Confidence 56799999999999876653 568999999999999999999999888876 468999999998643333333
No 311
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.21 E-value=1.2e-06 Score=90.61 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||+|.+++||..|+ ...++++||||++|||+.++..+.+.|.++. ..+.-||++||.........+++
T Consensus 136 ~~~LS~G~~qrl~la~aL~----~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~till~sH~l~e~~~~~d~i 208 (306)
T PRK13537 136 VGELSGGMKRRLTLARALV----NDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFMEEAERLCDRL 208 (306)
T ss_pred hhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCEE
Confidence 4579999999999987665 3568899999999999999999999998875 45788999999886444444444
No 312
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=1.3e-06 Score=87.03 Aligned_cols=65 Identities=25% Similarity=0.225 Sum_probs=55.7
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
..|||||+.+++||..++ ..+++++||||+++||+.++..+.+.|.++....+..+|++||+...
T Consensus 129 ~~lS~G~~qrl~laral~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~ 193 (232)
T cd03300 129 SQLSGGQQQRVAIARALV----NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE 193 (232)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 568999999999987766 36799999999999999999998888888763348899999999954
No 313
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.20 E-value=1.3e-06 Score=99.11 Aligned_cols=74 Identities=26% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||++++||..++ ...+++++|||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 153 ~~~~LSgGe~qrv~iAraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr 226 (529)
T PRK15134 153 YPHQLSGGERQRVMIAMALL----TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADR 226 (529)
T ss_pred CCcccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCE
Confidence 35679999999999998776 467899999999999999999999999988644478899999998544444444
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.20 E-value=2.3e-06 Score=82.56 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=53.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+..+..+...|.... ..+.-+|++||+..
T Consensus 121 ~~~LS~G~~~rl~la~al~----~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~ 184 (195)
T PRK13541 121 CYSLSSGMQKIVAIARLIA----CQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLES 184 (195)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCcc
Confidence 4568999999999887766 3678999999999999999988888886544 46788999999985
No 315
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.20 E-value=2.2e-06 Score=84.39 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=57.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcC-CCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTE-APFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~-~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
+..||||++++++||..++. .| .+++++|||+++||+..+..+.+.|.++. ..+.-+|++||+.... ...+
T Consensus 135 ~~~LSgG~~qrv~laral~~---~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~-~~g~tii~itH~~~~~-~~~d 206 (226)
T cd03270 135 APTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR-DLGNTVLVVEHDEDTI-RAAD 206 (226)
T ss_pred cCcCCHHHHHHHHHHHHHHh---CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEEeCHHHH-HhCC
Confidence 45789999999999877772 23 26999999999999999999999988875 4578899999998543 4443
No 316
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.8e-06 Score=77.96 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=28.9
Q ss_pred EEEEecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 001556 25 VRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1054)
Q Consensus 25 i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~l 66 (1054)
+.+.|=+-.++..+++.|| ++.|+|||||||||+|.+|+-=|
T Consensus 9 ~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 9 YSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred EEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 3444444456677777775 78888888888888888876433
No 317
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.19 E-value=1.6e-06 Score=92.55 Aligned_cols=77 Identities=26% Similarity=0.274 Sum_probs=64.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
.++.||||+|+++.||..+| ....++|+|||+++||......++++|.++.+..++=+|+|||.........+++.
T Consensus 151 yPheLSGG~rQRv~iAmALa----~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~ 226 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALA----LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226 (539)
T ss_pred CCcccCchHHHHHHHHHHHh----CCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEE
Confidence 46789999999999987766 33457789999999999999999999999988899999999999976666665554
Q ss_pred E
Q 001556 1046 K 1046 (1054)
Q Consensus 1046 v 1046 (1054)
|
T Consensus 227 V 227 (539)
T COG1123 227 V 227 (539)
T ss_pred E
Confidence 4
No 318
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=1.4e-06 Score=89.21 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++|+|||+++||..++..+...|.++. ..+.-+|++||+........++
T Consensus 135 ~~~LS~Gq~qrv~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~~~~til~vtH~~~~~~~~~d~ 206 (275)
T PRK13639 135 PHHLSGGQKKRVAIAGILA----MKPEIIVLDEPTSGLDPMGASQIMKLLYDLN-KEGITIIISTHDVDLVPVYADK 206 (275)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhCCE
Confidence 4578999999999887765 3678999999999999999999999999886 3478899999998643333443
No 319
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=2.5e-06 Score=87.13 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.++++||||+++||+.++..+...|.++....+.-+|++||+....
T Consensus 140 ~~~LS~G~~qrl~laral~----~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 140 PQNLSGGQKQRVAIASVLA----LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA 206 (271)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH
Confidence 3578999999999887665 467899999999999999999999999987633358999999998543
No 320
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.19 E-value=2.2e-06 Score=81.25 Aligned_cols=65 Identities=32% Similarity=0.455 Sum_probs=55.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||...+..+.+.|.++. .+.-+|++||+....
T Consensus 96 ~~~LS~G~~qrv~laral~----~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~ 160 (178)
T cd03247 96 GRRFSGGERQRLALARILL----QDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLTGI 160 (178)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH
Confidence 5679999999999987766 4668999999999999999999888888875 578999999998643
No 321
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.6e-06 Score=88.64 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=58.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.+++++|||++|||+.++..+.+.|.++. .+..+|++||+........++
T Consensus 166 ~~~LS~Gq~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~--~~~tiiivtH~~~~~~~~~d~ 236 (272)
T PRK14236 166 AFGLSGGQQQRLVIARAIA----IEPEVLLLDEPTSALDPISTLKIEELITELK--SKYTIVIVTHNMQQAARVSDY 236 (272)
T ss_pred cccCCHHHHHHHHHHHHHH----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCeEEEEeCCHHHHHhhCCE
Confidence 4578999999999997775 4778999999999999999999999999886 468899999998544443443
No 322
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.6e-06 Score=88.94 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=57.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ ...++++||||+++||..++..+...|.++. .+.-||++||+........++
T Consensus 178 ~~~LSgGe~qrv~LAraL~----~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~--~~~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 178 GLDLSGGQQQRLCIARAIA----PDPEVILMDEPASALDPVATSKIEDLIEELA--EEYTVVIVTHNMQQAARISDK 248 (285)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCE
Confidence 4568999999999987775 4668999999999999999999999998886 346899999987544444443
No 323
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.7e-06 Score=87.58 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=59.5
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..|||||+.+++||..|+ ...++++||||+++||..++..+...|.++. .+.-||++||+........+++
T Consensus 144 ~~~~LS~Gq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~~~~~~~~d~i 216 (251)
T PRK14249 144 SGLALSGGQQQRLCIARVLA----IEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNMQQAARASDWT 216 (251)
T ss_pred CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhCCEE
Confidence 35679999999999997775 3568999999999999999998888888875 5789999999986544444444
No 324
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.7e-06 Score=88.12 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+.+++||-.++. +.++++||||+++||+.++..+...|.++. .+..+|++||+........+++
T Consensus 161 ~~~LS~G~~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiii~tH~~~~~~~~~d~i 232 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAV----KPDILLMDEPASALDPISTMQLEETMFELK--KNYTIIIVTHNMQQAARASDYT 232 (267)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCEE
Confidence 56789999999998876663 568899999999999999999999998875 5789999999985443444443
No 325
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.18 E-value=1.8e-06 Score=97.11 Aligned_cols=73 Identities=22% Similarity=0.179 Sum_probs=59.7
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||++++||..++ ...++++||||+++||+.++..+.+.|.++. ..+.-||++||+........++
T Consensus 132 ~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFKYLSTGETRKTLLCQALM----SEPDLLILDEPFDGLDVASRQQLAELLASLH-QSGITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred CcccCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCE
Confidence 35679999999999998776 4678999999999999999999999999886 3477899999987544343333
No 326
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.18 E-value=1.9e-06 Score=84.18 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ ...++++||||+++||+..+..+.+.|.++. .+.-+|++||+....
T Consensus 123 ~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~~~ 187 (207)
T cd03369 123 GLNLSQGQRQLLCLARALL----KRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLRTI 187 (207)
T ss_pred CCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH
Confidence 5679999999999987775 4678999999999999999988888888875 588999999998543
No 327
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.7e-06 Score=87.90 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=59.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceE
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1046 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1046 (1054)
+..|||||+.+++||..++ ...++++||||+++||+.++..+.+.|.++. .+.-+|++||+........+++-+
T Consensus 148 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiii~tH~~~~i~~~~d~i~~ 221 (259)
T PRK14260 148 ALGLSGGQQQRLCIARALA----IKPKVLLMDEPCSALDPIATMKVEELIHSLR--SELTIAIVTHNMQQATRVSDFTAF 221 (259)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCeEEE
Confidence 5679999999999887775 4668999999999999999999889998876 468899999998654444444433
No 328
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.17 E-value=1.6e-06 Score=97.84 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||.+++||..++ .+.++++||||+++||+.++..+.+.|..+. ..+.-||++||+........++
T Consensus 401 ~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviivsHd~~~~~~~~d~ 472 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLL----TNPRVLILDEPTRGVDVGAKYEIYKLINQLA-QEGVAIIVVSSELAEVLGLSDR 472 (500)
T ss_pred cccCCHHHHHHHHHHHHHh----hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCE
Confidence 5679999999999998777 3578999999999999999999888888876 4577899999998544444443
No 329
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=2.2e-06 Score=87.94 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||-.++. ..+++|+|||++|||..++..+...|.++....+..||++||+....
T Consensus 141 ~~~LS~G~~qrv~laral~~----~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAV----EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA 207 (282)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 35789999999998877663 66899999999999999999999999888644588999999998544
No 330
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.17 E-value=1.8e-06 Score=85.59 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=55.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||..++ .+.+++++|||+++||+.++..+.+.|.++. .+..+|++||+....
T Consensus 137 ~~~LS~G~~qr~~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~ 201 (221)
T cd03244 137 GENLSVGQRQLLCLARALL----RKSKILVLDEATASVDPETDALIQKTIREAF--KDCTVLTIAHRLDTI 201 (221)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH
Confidence 5679999999999987775 4668999999999999999999888888875 568999999998543
No 331
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.17 E-value=1.9e-06 Score=97.00 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=59.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||.+++||..++ .++++++||||++|||+.++..+.+.|.++. ..+.-||++||+........++
T Consensus 401 ~~~LSgG~kqrl~la~al~----~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-~~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 401 ARTLSGGNQQKVLIAKCLE----ASPQLLIVDEPTRGVDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred cccCCcHHHHHHHHHHHHh----hCCCEEEECCCCcCcChhHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHhCCE
Confidence 5679999999999998775 4678999999999999999999999998886 3578899999998544443333
No 332
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=1.6e-06 Score=91.75 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=59.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..|||||+++++||-.|+. ..++++||||+++||...+..+...|.++.+..+.-+|++||.........+++
T Consensus 147 ~~~LSgGq~QRVaLARAL~~----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri 220 (377)
T PRK11607 147 PHQLSGGQRQRVALARSLAK----RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220 (377)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 45799999999999977763 567889999999999999988888888877556789999999986444444443
No 333
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.17 E-value=1.6e-06 Score=98.41 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=60.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||++++||..++ ...+++++|||+++||+.++..+.+.|.++....+.-||++||+........++
T Consensus 423 ~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~ 495 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALI----LKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQ 495 (529)
T ss_pred CccCCHHHHHHHHHHHHHh----CCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCe
Confidence 4679999999999998776 467899999999999999999999999988744478899999998544444443
No 334
>PRK00064 recF recombination protein F; Reviewed
Probab=98.16 E-value=3.9e-05 Score=81.39 Aligned_cols=66 Identities=26% Similarity=0.227 Sum_probs=52.3
Q ss_pred CCCCCCCChhhHHHHHHHHHhhh-----hcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHE-----MTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~-----~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
....+|+|++..++||+.+|... ....|+++||||+++||+.++..++..|.. -+.|+|+.||+..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~----~~~qv~it~~~~~ 340 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG----LGAQVFITTTDLE 340 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc----cCCEEEEEcCChh
Confidence 35678999999999999998543 357899999999999999887665555443 2569999999863
No 335
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.16 E-value=2.1e-06 Score=86.89 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=53.9
Q ss_pred CCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 969 ~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
.|||||+.+++||-.++ .+.++++||||+++||...+..+.+.|..+. ..+.-||++||+....
T Consensus 145 ~LS~G~~qrv~laral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 145 GFSGGEKKRNDILQMAV----LEPELCILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIVTHYQRIL 208 (248)
T ss_pred CCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHH
Confidence 58999999999987665 3568999999999999999988888887775 4578899999987533
No 336
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.16 E-value=2e-06 Score=97.58 Aligned_cols=72 Identities=24% Similarity=0.241 Sum_probs=59.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
+..||||||++++||..++ ...+++++|||+++||+.++..+.+.|.++....+.-||++||.........+
T Consensus 166 ~~~LSgGq~qrv~iA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 166 ARDLSGGEKQRVVLARQLA----KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 5679999999999998776 46779999999999999999999999999864457789999999864433333
No 337
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.16 E-value=2.2e-06 Score=96.43 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
+..||||||.+++||..++ ...++++||||++|||+.++..+.+.|.++....+..||++||+......
T Consensus 399 ~~~LSgGq~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 399 FHSLSWGQQRLALIVRALV----KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 5679999999999997665 47889999999999999999999999999873334579999999854433
No 338
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.16 E-value=1.9e-06 Score=97.43 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=59.6
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||++++||..++ .+.++++||||+++||..++..+.+.|.++. ..+.-||++||+........++
T Consensus 406 ~~~~LSgGq~qrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 406 NITELSGGNQQKVLISKWLC----CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSELPEIITVCDR 478 (510)
T ss_pred ccccCChHHHHHHHHHHHHh----cCCCEEEECCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHhhCCE
Confidence 35679999999999998776 3578999999999999999999999998886 4577899999997544444443
No 339
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.16 E-value=1.8e-06 Score=97.29 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=60.1
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||++++||..++ .+.++++||||+++||+.++..+.+.|.++. ..+.-||++||+........+.
T Consensus 392 ~~~~LSgGekqrv~lA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tviivtHd~~~~~~~~d~ 464 (501)
T PRK10762 392 AIGLLSGGNQQKVAIARGLM----TRPKVLILDEPTRGVDVGAKKEIYQLINQFK-AEGLSIILVSSEMPEVLGMSDR 464 (501)
T ss_pred chhhCCHHHHHHHHHHHHHh----hCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHhhCCE
Confidence 35679999999999998776 3678999999999999999999999999986 4577899999997544444443
No 340
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.15 E-value=2.6e-06 Score=79.27 Aligned_cols=62 Identities=23% Similarity=0.185 Sum_probs=52.2
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
....|||||+.+++||-.++ .+.+++++|||+++||..++..+.+.|.++ +.-+|++||+..
T Consensus 88 ~~~~LS~G~~~rv~laral~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~ 149 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLL----HKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS 149 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHH----cCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh
Confidence 35679999999999987665 467899999999999999988877777664 478999999975
No 341
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.15 E-value=2.1e-06 Score=85.76 Aligned_cols=72 Identities=28% Similarity=0.231 Sum_probs=58.4
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
..|||||+.+++||..++. +.+++++|||+.+||..++..+.+.|.++....++.+|++||+........++
T Consensus 129 ~~lS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 129 NQLSGGQRQRVALARALAV----EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 5689999999999977763 66899999999999999999999999887633378999999998643443433
No 342
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.15 E-value=0.022 Score=62.26 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001556 803 AIKEAESQYRELELLRQDSCRK 824 (1054)
Q Consensus 803 ~~~~~~~~~~~l~~~~~~~~~~ 824 (1054)
.+..+...+++..-++.....+
T Consensus 498 kiefmkEeiQethldyR~els~ 519 (1265)
T KOG0976|consen 498 KIEFMKEEIQETHLDYRSELSE 519 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444444333333
No 343
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.15 E-value=3.2e-06 Score=83.83 Aligned_cols=68 Identities=22% Similarity=0.167 Sum_probs=55.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
+..|||||+++++||..++.. ..+.++++||||+++||+.....+.+.|.++. ..+.-+|++||+...
T Consensus 167 ~~~LSgGe~QRl~LAraL~~~-~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~-~~g~tvIiitH~~~~ 234 (261)
T cd03271 167 ATTLSGGEAQRIKLAKELSKR-STGKTLYILDEPTTGLHFHDVKKLLEVLQRLV-DKGNTVVVIEHNLDV 234 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcC-CCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHH
Confidence 457899999999999877632 12357899999999999999999888888876 457789999999853
No 344
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=2.1e-06 Score=87.52 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++.+++||..++. ..++++||||+++||..++..+.+.|.++. .+..+|++||+........+++
T Consensus 159 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~tiiivth~~~~~~~~~d~i 230 (265)
T PRK14252 159 AFNLSGGQQQRLCIARALAT----DPEILLFDEPTSALDPIATASIEELISDLK--NKVTILIVTHNMQQAARVSDYT 230 (265)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHHhCCEE
Confidence 45789999999998876663 678999999999999999999999998886 4689999999985443444443
No 345
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=2.3e-06 Score=85.36 Aligned_cols=65 Identities=20% Similarity=0.173 Sum_probs=55.4
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
..|||||+.+++||..++ ..++++++|||+++||..++..+...|.++....+.-+|++||+...
T Consensus 128 ~~LS~G~~qrl~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~ 192 (235)
T cd03299 128 ETLSGGEQQRVAIARALV----VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE 192 (235)
T ss_pred ccCCHHHHHHHHHHHHHH----cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 568999999999987665 35689999999999999999998898988763448899999999854
No 346
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.14 E-value=5.1e-06 Score=77.74 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=59.0
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHh-cCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFAL-AQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~-~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+...||-||+.++-+|=.+ +...+++|||||++|||..++...++.|.+++. ..+.++|+||||......+.++
T Consensus 168 ~~~~LS~Ge~rrvLiaRAL----v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 168 PFGSLSQGEQRRVLIARAL----VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred chhhcCHhHHHHHHHHHHH----hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccce
Confidence 5678999999998776333 455668899999999999999999999998885 3479999999999654444444
No 347
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=2.3e-06 Score=96.61 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=59.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||++++||..++ ...++++||||++|||+.++..+.+.|.++. ..+.-||++||+........+.
T Consensus 403 ~~~LSgG~kqrv~lA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLL----LNPKILILDEPTRGIDVGAKYEIYKLINQLV-QQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred cccCCHHHHHHHHHHHHHh----hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHhCCE
Confidence 5679999999999998776 3678999999999999999999999998876 4577899999998544444433
No 348
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=2.3e-06 Score=85.90 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=55.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||-.|+ .+.++++||||+++||+.++..+...|.++. .+..+|++||+....
T Consensus 135 ~~~LS~G~~~rl~la~aL~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~ 199 (236)
T cd03253 135 GLKLSGGEKQRVAIARAIL----KNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAHRLSTI 199 (236)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEcCCHHHH
Confidence 4679999999999887665 3668999999999999999998888888876 378899999998543
No 349
>PRK11637 AmiB activator; Provisional
Probab=98.13 E-value=0.0037 Score=68.63 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001556 214 PTEKELSELQRKIRN 228 (1054)
Q Consensus 214 ~l~~~~~~l~~~~~~ 228 (1054)
.++.+++.++.++..
T Consensus 44 ~~~~~l~~l~~qi~~ 58 (428)
T PRK11637 44 DNRDQLKSIQQDIAA 58 (428)
T ss_pred hhHHHHHHHHHHHHH
Confidence 455555555544443
No 350
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.13 E-value=3.4e-06 Score=85.64 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=54.1
Q ss_pred CCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 969 ~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
.|||||+.+++||..++ ...+++++|||+++||..++..+.+.|.++. ..+.-||++||+..
T Consensus 151 ~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~~tH~~~ 212 (252)
T CHL00131 151 GFSGGEKKRNEILQMAL----LDSELAILDETDSGLDIDALKIIAEGINKLM-TSENSIILITHYQR 212 (252)
T ss_pred CCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHH
Confidence 48999999999997776 4668999999999999999999999998876 45788999999875
No 351
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.13 E-value=2.6e-06 Score=96.82 Aligned_cols=70 Identities=29% Similarity=0.406 Sum_probs=59.7
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
..||||+|++++||=++ ....|.++|||++++||+.+.+.+.+.|.+.. .++-+|+|||++. +++..+++
T Consensus 608 ~~LSGGQrQrlalARaL----l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~-ti~~adrI 677 (709)
T COG2274 608 ANLSGGQRQRLALARAL----LSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLS-TIRSADRI 677 (709)
T ss_pred CCCCHHHHHHHHHHHHh----ccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccch-HhhhccEE
Confidence 45899999999988544 46788889999999999999999999999988 8899999999995 55555443
No 352
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=3.2e-06 Score=87.67 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=58.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..|+ ...++++||||++|||..++..+...|.++. .+..||++||+........++
T Consensus 198 ~~~LSgGq~qrv~LAraL~----~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~--~~~tiiivtH~~~~i~~~~d~ 268 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLA----VDPEVILMDEPASALDPIATSKIEDLIEELA--EEYTVVVVTHNMQQAARISDQ 268 (305)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCE
Confidence 4568999999999998776 3678999999999999999999999998887 357899999998544443443
No 353
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=3.8e-06 Score=86.08 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=57.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||-.|+ ...+++|+|||+++||+.++..+...|.++....+..+|++||+....
T Consensus 138 ~~~LS~G~~qrv~lAraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~ 204 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIA----LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA 204 (277)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4568999999999997776 356899999999999999999999999888633488999999998643
No 354
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.12 E-value=3.5e-06 Score=89.99 Aligned_cols=76 Identities=26% Similarity=0.316 Sum_probs=64.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceE
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1046 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1046 (1054)
++.||||||++++||-.||+ ...++|.||+++.||......++++|.++-..-+.=||||||+-.......+++.|
T Consensus 427 P~elSGGQrQRvaIARALa~----~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~v 502 (539)
T COG1123 427 PHELSGGQRQRVAIARALAL----EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAV 502 (539)
T ss_pred chhcCcchhHHHHHHHHHhc----CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEE
Confidence 56789999999999988874 34577899999999999999999999999878899999999998655555555544
No 355
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.12 E-value=0.0091 Score=64.22 Aligned_cols=64 Identities=8% Similarity=0.107 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 634 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVK 697 (1054)
Q Consensus 634 ~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 697 (1054)
+.++..+..-+++.......++..+..+..++..+...+............++..+...+..++
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~le 154 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELE 154 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhh
Confidence 4445555555555555544444444444444444444444443333333333333333333333
No 356
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=3.4e-06 Score=86.27 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=56.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
+..||||++.+++||-.++ ...++++||||++|||+.++..+...|.++....+..+|++||+.....
T Consensus 138 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 138 PHRLSGGQKQRVAIAGVLA----LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA 205 (279)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 3468999999999987665 3568899999999999999999999998887344789999999985443
No 357
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.022 Score=62.12 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=9.0
Q ss_pred CCcEEEEeccCCC
Q 001556 1023 QGSQWIFITPHDV 1035 (1054)
Q Consensus 1023 ~~~Q~i~iT~~~~ 1035 (1054)
...|+|.++-+..
T Consensus 1073 ~kgdiI~Vlnkde 1085 (1118)
T KOG1029|consen 1073 KKGDIINVLNKDE 1085 (1118)
T ss_pred cCCCEEEecCCCC
Confidence 4568888887664
No 358
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.12 E-value=2.6e-06 Score=96.00 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=59.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||++++||..++ .+.++++||||++|||..++..+.+.|.++. ..+.-||++||+........+.
T Consensus 393 ~~~~LSgGq~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 393 LIMNLSGGNQQKAILGRWLS----EDMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred ccccCCHHHHHHHHHHHHHc----cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHhhCCE
Confidence 35679999999999997765 4678999999999999999999999988876 4577799999998644444443
No 359
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.12 E-value=2.4e-06 Score=77.15 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 970 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 970 lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
||||++.+++||..++ ...|+++||||+.+||..++..+.+.|.++ +..+|++||+........+
T Consensus 71 lS~G~~~rv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d 135 (144)
T cd03221 71 LSGGEKMRLALAKLLL----ENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCC
Confidence 9999999999886665 467899999999999999988877777664 4689999998754333333
No 360
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.11 E-value=2.4e-06 Score=98.46 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=61.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||||++++||..|+ ...+++|+|||+++||..++..+.++|.++....+.-||+|||+........+++
T Consensus 461 ~~~LSgGqrQRv~iAraL~----~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri 534 (623)
T PRK10261 461 PHEFSGGQRQRICIARALA----LNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRV 534 (623)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4679999999999998776 4678999999999999999999999999886445788999999985444444443
No 361
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.11 E-value=3e-06 Score=95.37 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=59.6
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||++++||..++ .+.++++||||++|||..++..+...|.++. ..+.-||++||+........++
T Consensus 388 ~~~~LSgGq~qrv~la~al~----~~p~illLDEPt~gLD~~~~~~~~~~l~~l~-~~~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 388 QIGSLSGGNQQKVIIGRWLL----TQPEILMLDEPTRGIDVGAKFEIYQLIAELA-KKDKGIIIISSEMPELLGITDR 460 (491)
T ss_pred ccccCCcHHHHHHHHHHHHh----cCCCEEEEcCCCcccChhHHHHHHHHHHHHH-HCCCEEEEECCChHHHHhhCCE
Confidence 35679999999999986665 5778999999999999999999999888876 4577899999998544444443
No 362
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.11 E-value=2.2e-06 Score=83.66 Aligned_cols=72 Identities=10% Similarity=-0.059 Sum_probs=55.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||||.+++||..++ .++|++++|||++++|+.++..+...|.+..+ +.=+|++||.........+++
T Consensus 102 ~~~lS~G~~qrv~la~al~----~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i 173 (213)
T PRK15177 102 VSEYSVTMKTHLAFAINLL----LPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNPRLIKEHCHAF 173 (213)
T ss_pred HhhcCHHHHHHHHHHHHHh----cCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCHHHHHHhcCee
Confidence 4568999999999987776 36789999999999999998888887766552 233889998885444444443
No 363
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.11 E-value=0.032 Score=62.51 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=7.1
Q ss_pred HHHHHHHHhcC
Q 001556 141 QELLELIDHFN 151 (1054)
Q Consensus 141 ~~~~~~~~~~~ 151 (1054)
..|..-+..||
T Consensus 5 ~SVk~Avs~FG 15 (522)
T PF05701_consen 5 ESVKEAVSLFG 15 (522)
T ss_pred hHHHHHHHHcC
Confidence 45666666676
No 364
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.11 E-value=2.3e-06 Score=97.12 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||.+++||..++ ...+++++|||+++||+.++..+.+.|.++....+.-||++||+........+.
T Consensus 424 ~~~~LSgGq~qrv~laral~----~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLI----KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence 35679999999999997665 367899999999999999999999999888644478899999998544444443
No 365
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=5e-06 Score=75.25 Aligned_cols=79 Identities=25% Similarity=0.256 Sum_probs=65.8
Q ss_pred cCCCCCCCChhhHHHHHHHHH-hhhhcCCC-ceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 965 RDTRGLSGGERSFSTLCFALA-LHEMTEAP-FRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 965 ~~~~~lSgGErs~~~lal~~a-l~~~~~~p-~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
++...|||||++++.||=.+| +|...+.| .+++|||++.||-.+-...+.+..+|+ ..+.=|++|-|.-.....+.+
T Consensus 131 R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la-~~g~~V~~VLHDLNLAA~YaD 209 (259)
T COG4559 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA-REGGAVLAVLHDLNLAAQYAD 209 (259)
T ss_pred cchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHH-hcCCcEEEEEccchHHHHhhh
Confidence 456679999999999996665 77777777 667999999999999988888888888 566899999999877777776
Q ss_pred Cc
Q 001556 1043 RI 1044 (1054)
Q Consensus 1043 ~~ 1044 (1054)
++
T Consensus 210 ri 211 (259)
T COG4559 210 RI 211 (259)
T ss_pred ee
Confidence 54
No 366
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=3.5e-06 Score=75.13 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=28.5
Q ss_pred ceEEEeCC-ceEEEEcCCCCchHHHHHHHHHHhcCC
Q 001556 35 SLQIELGE-WVNFITGQNGSGKSAILTALCIAFGCR 69 (1054)
Q Consensus 35 ~~~i~f~~-~~~~I~G~NGsGKStil~ai~~~lg~~ 69 (1054)
+..++|.+ |+|.|+|||||||||++..+...+...
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d 54 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD 54 (252)
T ss_pred cceeeecCCceeEEECCCCccHHHHHHHHHHhcccc
Confidence 34556655 699999999999999999998877543
No 367
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=3.3e-06 Score=79.40 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=42.6
Q ss_pred eEeEEEEEecccccceEEEeCCceEEEEcCCCCchHHHHHHHHHHhcC
Q 001556 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGC 68 (1054)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~ 68 (1054)
+|.++.|.||++|....|.+.| +|+++|||.|||||.+.+|...+-+
T Consensus 1 mi~sl~l~nfk~y~n~~i~l~~-ltVF~G~NssGKSt~iqsl~li~s~ 47 (374)
T COG4938 1 MILSLSLKNFKPYINGKIILKP-LTVFIGPNSSGKSTTIQSLYLIYSG 47 (374)
T ss_pred CcceeeecCccceecceEEEec-ceEEEcCCCCchhHHHHHHHHHHHh
Confidence 3789999999999999999996 9999999999999999999877654
No 368
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.09 E-value=3.3e-06 Score=86.23 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=55.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..||||++.+++||..++ ...++++||||+++||+.++..+...|.++. ..+.-+|++||+....
T Consensus 134 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~til~~tH~~~~~ 199 (274)
T PRK13644 134 PKTLSGGQGQCVALAGILT----MEPECLIFDEVTSMLDPDSGIAVLERIKKLH-EKGKTIVYITHNLEEL 199 (274)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHH
Confidence 3568999999999987665 3568899999999999999999888888875 4588999999998643
No 369
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.09 E-value=2.5e-06 Score=95.94 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||++++||-.++ .+.++++||||+++||+.++..+.+.|.++. ..+.-||++||+........++
T Consensus 132 ~~~LSgGq~qrv~lA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 132 VATLSVSQMQMIEIAKAFS----YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK-ERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred hhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHhCCE
Confidence 5679999999999997776 3678999999999999999999999988875 4578899999997544344443
No 370
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.09 E-value=2.7e-06 Score=88.14 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=58.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||++.+++||..++ ...++++||||++|||+.++..+...|.++. .+..||++||.........+++
T Consensus 131 ~~~LS~G~~qrv~la~al~----~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 131 IGQLSKGYRQRVGLAQALI----HDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KDKTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEcCCHHHHHHhCCEE
Confidence 4578999999999987665 4568899999999999999999999888875 4688999999886444444444
No 371
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.09 E-value=4.2e-06 Score=82.73 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=58.0
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
..|||||+++++||..++ ...+++++|||+++||...+..+...|.++..+.+.-+|++||.... ....++
T Consensus 140 ~~lS~G~~qrv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~ 210 (220)
T TIGR02982 140 HNLSGGQKQRVAIARALV----HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADR 210 (220)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCE
Confidence 468999999999987665 35689999999999999999988888888764458999999999853 344433
No 372
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.09 E-value=0.013 Score=57.30 Aligned_cols=58 Identities=14% Similarity=0.258 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001556 641 ERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKN 698 (1054)
Q Consensus 641 ~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 698 (1054)
...+..+......+...+..+....+.+......+......+......+..+++.+..
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444444444444444444433
No 373
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.09 E-value=2.8e-06 Score=84.98 Aligned_cols=72 Identities=22% Similarity=0.225 Sum_probs=57.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..|||||+.+++||..++ .+.++++||||+++||..++..+...|.++. ..+.-+|++||+........+.
T Consensus 137 ~~~LS~G~~qrv~laral~----~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~~~~tIIiiSHd~~~~~~~ad~ 208 (255)
T cd03236 137 IDQLSGGELQRVAIAAALA----RDADFYFFDEPSSYLDIKQRLNAARLIRELA-EDDNYVLVVEHDLAVLDYLSDY 208 (255)
T ss_pred hhhCCHHHHHHHHHHHHHH----hCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCE
Confidence 4568999999999998776 3568999999999999999988888888876 3467899999998543333333
No 374
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=3.4e-06 Score=87.87 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
...|||||+++++||-.++ ...++++||||+++||+.....+.+.|..+. +++-+|+|||+........+++
T Consensus 223 ~~~LSgGqkqRl~LARAl~----~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~--~~~Tii~iTH~l~~i~~~~Dri 294 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIA----LEPEVLLMDEPTSALDPIATAKIEELILELK--KKYSIIIVTHSMAQAQRISDET 294 (329)
T ss_pred cccCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEE
Confidence 4568999999999987664 5788999999999999999988888888776 5789999999986544434443
No 375
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.08 E-value=3.2e-06 Score=89.88 Aligned_cols=73 Identities=22% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
+..||||||++++||-.|+ ...++++||||+++||..++..+...|.++. ..+.-+|++||.........+++
T Consensus 137 ~~~LSgGerQRv~IArAL~----~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~-~~g~TIIivsHdl~~~~~~adri 209 (402)
T PRK09536 137 VTSLSGGERQRVLLARALA----QATPVLLLDEPTASLDINHQVRTLELVRRLV-DDGKTAVAAIHDLDLAARYCDEL 209 (402)
T ss_pred hhhCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEE
Confidence 5679999999999997776 4568999999999999999998889898886 35778999998875444444443
No 376
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.07 E-value=4.2e-06 Score=96.97 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=54.9
Q ss_pred CCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 969 ~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
.||||||++++||=.+ +.+.|+++|||++++||+.+...+.+.|.++. ++.-+|+|||+.....
T Consensus 485 ~LSGGQrQRialARAl----l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~ 548 (588)
T PRK11174 485 GLSVGQAQRLALARAL----LQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLA 548 (588)
T ss_pred CCCHHHHHHHHHHHHH----hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHH
Confidence 5899999999988433 34789999999999999999999999898876 7899999999995433
No 377
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.06 E-value=4.6e-05 Score=89.37 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 001556 844 TPEQLSAQVNRLNQRLKH 861 (1054)
Q Consensus 844 ~~~~l~~~~~~l~~~l~~ 861 (1054)
.++.|..+...+..++..
T Consensus 567 ~l~~L~~En~~L~~~l~~ 584 (722)
T PF05557_consen 567 TLEALQAENEDLLARLRS 584 (722)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455555666666665544
No 378
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=0.00065 Score=70.64 Aligned_cols=67 Identities=18% Similarity=0.078 Sum_probs=50.7
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcC----CCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTE----APFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1034 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~----~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1034 (1054)
-..||.||+..+|++|-+|=....| --.+|+|+|-..+|+..+-.+...+... +..+-||||+||+.
T Consensus 527 gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~-~t~~kQviVLtHnt 597 (758)
T COG4694 527 GNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEE-KTNIKQVIVLTHNT 597 (758)
T ss_pred cccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHH-HhCceEEEEEeccc
Confidence 3459999999999998877443322 3467899999999997666655555544 37889999999995
No 379
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.05 E-value=3.1e-06 Score=95.59 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=59.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||++++||..|+. ..++++||||+++||+.++..+.+.|.++. ..+.-||++||+........+.
T Consensus 139 ~~~LSgG~~qrv~iA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiitHd~~~~~~~~d~ 210 (500)
T TIGR02633 139 VGDYGGGQQQLVEIAKALNK----QARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKLNEVKAVCDT 210 (500)
T ss_pred hhhCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcHHHHHHhCCE
Confidence 56799999999999977763 567999999999999999999999998886 4578899999997544333333
No 380
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=3.8e-06 Score=84.83 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=55.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||-.|+ .+.+++++|||+.+||..++..+.+.|.++. .++.+|++||+....
T Consensus 151 ~~~LS~G~~qrl~laral~----~~P~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiilvsh~~~~~ 215 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALA----LKPKVLLMDEPTSMIDIVNSQAIEKLITELK--NEIAIVIVSHNPQQV 215 (257)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCcEEEEEECCHHHH
Confidence 4568999999999987665 4668899999999999999999999988875 469999999998543
No 381
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.05 E-value=3.3e-06 Score=95.11 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=58.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
+..||||||++++||..++ .+.++++||||+++||+.++..+.+.|.++. ..+.-||++||+........+
T Consensus 138 ~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiiiitHd~~~~~~~~d 208 (501)
T PRK11288 138 LKYLSIGQRQMVEIAKALA----RNARVIAFDEPTSSLSAREIEQLFRVIRELR-AEGRVILYVSHRMEEIFALCD 208 (501)
T ss_pred hhhCCHHHHHHHHHHHHHH----hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCC
Confidence 5679999999999987666 3678999999999999999999999998875 457889999999754333333
No 382
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.05 E-value=0.0098 Score=67.87 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 405 KLSKEKNEIRRISDEIEDYDKKCREIRSEIREL 437 (1054)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l 437 (1054)
.+.+...+++-+...+..-..+|.+|..++..+
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 383
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.05 E-value=3.3e-06 Score=95.16 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=59.7
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||.+++||..|+ .+.+++++|||+++||+.++..+.+.|.++. ..+.-||++||+........++
T Consensus 137 ~~~~LSgG~~qrv~la~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiiivtHd~~~~~~~~d~ 209 (510)
T PRK15439 137 SAGSLEVADRQIVEILRGLM----RDSRILILDEPTASLTPAETERLFSRIRELL-AQGVGIVFISHKLPEIRQLADR 209 (510)
T ss_pred ChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 35679999999999998776 3678999999999999999999999998886 4578899999997544444443
No 384
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=3.3e-06 Score=95.33 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=59.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||++++||..++ ...++++||||+++||+.++..+.+.|.++. ..+.-||++||+........++
T Consensus 141 ~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tvi~~tH~~~~~~~~~d~ 212 (506)
T PRK13549 141 VGNLGLGQQQLVEIAKALN----KQARLLILDEPTASLTESETAVLLDIIRDLK-AHGIACIYISHKLNEVKAISDT 212 (506)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHHHHHHhcCE
Confidence 5679999999999998776 4678999999999999999999999999885 4577899999987544444444
No 385
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.05 E-value=6.7e-06 Score=80.17 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=53.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHH-HHHHhcCCcEEEEeccCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTL-VDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l-~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
...|||||+.+++||-.++. ..+++++|||+++||+.+...++..+ ..+. ..+.-+|++||+......
T Consensus 125 ~~~lS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~ll~~~~-~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 125 GINLSGGQKQRISLARAVYS----DADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLPH 193 (204)
T ss_pred CCcCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHhc-cCCCEEEEEeCCHHHHhh
Confidence 45689999999998877663 67899999999999999887777754 4443 347899999999854433
No 386
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.05 E-value=3.9e-06 Score=96.67 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=60.7
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..|||||+++++||..|+ ...+++++|||+++||+..+..+.++|.++....+.-||+|||.........+++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~----~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri 239 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALS----CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRV 239 (623)
T ss_pred CCccCCHHHHHHHHHHHHHh----CCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 35679999999999997776 4677999999999999999999999999886444788999999975444444443
No 387
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.05 E-value=4.5e-06 Score=96.60 Aligned_cols=63 Identities=27% Similarity=0.300 Sum_probs=54.9
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
..||||||++++||=.+. .+.|+++||||+++||+.+...+.+.|.++. +++-+|+|||++..
T Consensus 468 ~~LSgGqrQRiaLARall----~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~~ 530 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALL----KDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLST 530 (571)
T ss_pred CcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhHH
Confidence 358999999999985543 5779999999999999999999998898876 78999999999953
No 388
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.04 E-value=8.9e-06 Score=71.13 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=54.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
.+..||||++++++||=.+|+. ...++||||+++|||+-..-+...|.+++ ..+.-++++||.-.
T Consensus 149 YP~~LSGGQQQR~aIARaLame----P~vmLFDEPTSALDPElVgEVLkv~~~LA-eEgrTMv~VTHEM~ 213 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAME----PEVMLFDEPTSALDPELVGEVLKVMQDLA-EEGRTMVVVTHEMG 213 (256)
T ss_pred CccccCchHHHHHHHHHHHhcC----CceEeecCCcccCCHHHHHHHHHHHHHHH-HhCCeEEEEeeehh
Confidence 3567999999999999888854 33457999999999998888888888888 78899999998754
No 389
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.03 E-value=0.016 Score=56.58 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 872 DLRMLYEEKEHKILRKQQTYQAFREKVRACR 902 (1054)
Q Consensus 872 ~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~ 902 (1054)
+.....+++...+..+...+.++...|..+.
T Consensus 218 e~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 218 ELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 390
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.03 E-value=7.4e-06 Score=80.89 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=53.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHH-HHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDT-LVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~-l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||+.+++||-.++ .+.+++++|||+++||+.++..+.+. +.+..+..+.-+|++||.....
T Consensus 138 ~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~ 205 (218)
T cd03290 138 GINLSGGQRQRICVARALY----QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL 205 (218)
T ss_pred CCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH
Confidence 5679999999999986665 35689999999999999988777762 4444435578999999998643
No 391
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.02 E-value=0.0035 Score=71.43 Aligned_cols=95 Identities=12% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcchHHHH
Q 001556 637 IKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEIS 716 (1054)
Q Consensus 637 l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 716 (1054)
+..|+.+++.++.++...+..-++++.++..+...-..++.++..++.+...++.++..+....+. ....+..++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~-----DKq~l~~LE 494 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ-----DKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 344555555555555555554445555444443333344444444444444444444444443333 233344455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001556 717 QEISNIQEEIQEKEIILEKL 736 (1054)
Q Consensus 717 ~~~~~l~~~~~~~~~~~~~~ 736 (1054)
.++.+.......++.++.+.
T Consensus 495 krL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 495 KRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444433
No 392
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.01 E-value=9e-06 Score=78.77 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=27.1
Q ss_pred cceEEEeCC-ceEEEEcCCCCchHHHHHHHHHHhc
Q 001556 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCIAFG 67 (1054)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NGsGKStil~ai~~~lg 67 (1054)
.+.++.+.+ .++.|+|||||||||++.+|.-.|-
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344555555 5999999999999999999987664
No 393
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.01 E-value=4.4e-06 Score=94.54 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||++++||..++ ...+++++|||+++||+.++..+.+.|.++. ..+.-||++||+........++
T Consensus 143 ~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivsHd~~~~~~~~d~ 214 (510)
T PRK09700 143 VANLSISHKQMLEIAKTLM----LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR-KEGTAIVYISHKLAEIRRICDR 214 (510)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhCCE
Confidence 5679999999999997776 4678999999999999999999999999886 3477899999987533333443
No 394
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.00 E-value=4.6e-06 Score=94.02 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=58.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
+..||||||++++||..|+ ...++++||||+++||+.++..+.+.|.++. ..+.-||++||+........++
T Consensus 139 ~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tvii~sHd~~~~~~~~d~ 210 (501)
T PRK10762 139 VGELSIGEQQMVEIAKVLS----FESKVIIMDEPTDALTDTETESLFRVIRELK-SQGRGIVYISHRLKEIFEICDD 210 (501)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHhCCE
Confidence 5679999999999997776 3678999999999999999999999888875 4577899999987543344443
No 395
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.00 E-value=7e-06 Score=82.05 Aligned_cols=78 Identities=28% Similarity=0.301 Sum_probs=65.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCceE
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKK 1046 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v 1046 (1054)
++.||||+|+++.||..+| ....++|-|||+++||-.--..+.++|.++-...++=++||||+......+++++-|
T Consensus 155 PHeLSGGqRQRVMIAMALa----n~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 155 PHELSGGQRQRVMIAMALA----NEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred CcccCcchhhHHHHHHHHc----CCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 6789999999999987666 344578999999999999888889999888778999999999999766677766655
Q ss_pred Ee
Q 001556 1047 QQ 1048 (1054)
Q Consensus 1047 ~~ 1048 (1054)
-+
T Consensus 231 M~ 232 (534)
T COG4172 231 MQ 232 (534)
T ss_pred Ee
Confidence 43
No 396
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.00 E-value=1.3e-05 Score=82.88 Aligned_cols=63 Identities=25% Similarity=0.324 Sum_probs=51.0
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCcee-echhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRA-MDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v-~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
..||||+|++++||=.| | +-||+| ||||++|||..-.......|... +..+.=+|+|||++..
T Consensus 471 ~~LSgGQRQRIaLARAl----Y-G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~-k~rG~~vvviaHRPs~ 534 (580)
T COG4618 471 ATLSGGQRQRIALARAL----Y-GDPFLVVLDEPNSNLDSEGEAALAAAILAA-KARGGTVVVIAHRPSA 534 (580)
T ss_pred CCCCchHHHHHHHHHHH----c-CCCcEEEecCCCCCcchhHHHHHHHHHHHH-HHcCCEEEEEecCHHH
Confidence 46899999999988433 2 456555 99999999999888877777764 4889999999999953
No 397
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.00 E-value=9.8e-06 Score=77.88 Aligned_cols=77 Identities=26% Similarity=0.261 Sum_probs=64.6
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
..+.||||+++++++|-.+|+- .-|+|.||+.++||-.-+..+.++|.++-...+.=|+||||.-......++++.
T Consensus 106 yPhelSGGQrQRi~IARALal~----P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~ 181 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALN----PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIA 181 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhC----CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEE
Confidence 4678999999999999888853 457889999999999999999999999877889999999999865555555554
Q ss_pred E
Q 001556 1046 K 1046 (1054)
Q Consensus 1046 v 1046 (1054)
|
T Consensus 182 V 182 (268)
T COG4608 182 V 182 (268)
T ss_pred E
Confidence 4
No 398
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.00 E-value=8e-06 Score=78.83 Aligned_cols=74 Identities=27% Similarity=0.222 Sum_probs=58.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||+|+++|||=.+|.. .+.+.|||||.+||..-++.+=.-|.++-..-+.=+++|||+.......+++
T Consensus 134 yP~QLSGGQrQRVALARALA~e----P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladr 207 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVE----PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADR 207 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcC----CCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcce
Confidence 3678999999999999888743 5677899999999998776666667666546689999999999665555544
No 399
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.00 E-value=0.06 Score=61.70 Aligned_cols=67 Identities=13% Similarity=0.289 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 371 ESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIREL 437 (1054)
Q Consensus 371 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l 437 (1054)
++++...++.++.++......+..++..+..+...+.....++..|+.+...+.....+|...+..+
T Consensus 1227 i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444555444444444444444444444444445555555544444444444444443
No 400
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.99 E-value=7.4e-06 Score=82.85 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=54.2
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
..||||++.+++||-.++ .+.+++|||||+++||+..+..+...|.+.. .++.+|+|||+....
T Consensus 137 ~~LS~G~~qrl~LaRall----~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i 200 (275)
T cd03289 137 CVLSHGHKQLMCLARSVL----SKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAM 200 (275)
T ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHH
Confidence 468999999999987665 3578999999999999999988888888765 689999999998543
No 401
>PRK13409 putative ATPase RIL; Provisional
Probab=97.99 E-value=5.3e-06 Score=93.85 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=60.0
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..|||||+++++||..++ ...++++||||+++||...+..+...|.++. . +.-||++||+........+++
T Consensus 209 ~~~~LSgGe~qrv~ia~al~----~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~~~l~~~~D~v 281 (590)
T PRK13409 209 DISELSGGELQRVAIAAALL----RDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDLAVLDYLADNV 281 (590)
T ss_pred ChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999997665 4678999999999999999999999998887 3 888999999985444444443
No 402
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=0.037 Score=58.94 Aligned_cols=11 Identities=9% Similarity=0.145 Sum_probs=5.1
Q ss_pred HHHHHHHHhcc
Q 001556 512 LLRGCAREANY 522 (1054)
Q Consensus 512 ~~~~~l~~~~~ 522 (1054)
.+..+++..++
T Consensus 129 EV~~ilK~L~Y 139 (581)
T KOG0995|consen 129 EVVQILKNLKY 139 (581)
T ss_pred HHHHHHHhCCC
Confidence 34445554433
No 403
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.98 E-value=6.2e-06 Score=95.32 Aligned_cols=65 Identities=25% Similarity=0.315 Sum_probs=55.1
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
..||||||++++||=.+ +.++|++|||||+++||+.++..+.+.|.... .++-+|+|||+.....
T Consensus 470 ~~LSgGq~QRialARal----l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~~ 534 (588)
T PRK13657 470 RQLSGGERQRLAIARAL----LKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVR 534 (588)
T ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHHH
Confidence 35899999998887433 35899999999999999999999888888875 6899999999996443
No 404
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.98 E-value=7.4e-06 Score=94.92 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=54.9
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
..||||||++++||=.+ +...|++|||||+++||+.+...+...|.++. .++-+|+|||+.....
T Consensus 479 ~~LSGGqrQRi~LARal----l~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~~ 543 (582)
T PRK11176 479 VLLSGGQRQRIAIARAL----LRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIE 543 (582)
T ss_pred CcCCHHHHHHHHHHHHH----HhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH
Confidence 34899999999987433 35779999999999999999999999998876 7899999999995433
No 405
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.97 E-value=1.1e-05 Score=81.85 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=51.9
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHH-HHHhcCCcEEEEeccCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLV-DFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~-~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
...|||||+.+++||..++ .+.+++|||||+++||+..+..+...+. .+. .+..+|++||+...
T Consensus 157 ~~~LSgGq~qrv~lAraL~----~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~ 221 (282)
T cd03291 157 GITLSGGQRARISLARAVY----KDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEH 221 (282)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHH
Confidence 3578999999999887666 3678999999999999998877777654 443 57889999999853
No 406
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.96 E-value=0.062 Score=60.90 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 847 QLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKV 898 (1054)
Q Consensus 847 ~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i 898 (1054)
.....+..+...+.. ..-..+.+...+..+...+..+......+-...
T Consensus 448 ~~~~~i~~l~~~L~~----~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A 495 (560)
T PF06160_consen 448 DVSDEIEELSDELNQ----VPINMDEVNKQLEEAEDDVETLEEKTEELIDNA 495 (560)
T ss_pred HHHHHHHHHHHHHhc----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433 333455555555555655555555544444433
No 407
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.96 E-value=1e-05 Score=93.78 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=55.8
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
..||||||++++||=.+. .+.|+++||||+++||+.+.+.+.+.|.++. .++-+|+|||+......
T Consensus 475 ~~LSGGqrQRialARaLl----~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~~~l~~ 540 (592)
T PRK10790 475 NNLSVGQKQLLALARVLV----QTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRLSTIVE 540 (592)
T ss_pred CCCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHHh
Confidence 358999999999885443 5779999999999999999999999998876 67999999999954443
No 408
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.96 E-value=8.1e-06 Score=82.72 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=55.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
...|||||+.+++||-.++ ...++++||||+++||+.++..+...|..+. .+.-+|++||+.....
T Consensus 154 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~~ 219 (257)
T cd03288 154 GENFSVGQRQLFCLARAFV----RKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVSTIL 219 (257)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHHHH
Confidence 4568999999999887665 3568999999999999999888888887764 5889999999996544
No 409
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.95 E-value=1.8e-05 Score=71.98 Aligned_cols=60 Identities=25% Similarity=0.301 Sum_probs=49.6
Q ss_pred CCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCC
Q 001556 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1034 (1054)
Q Consensus 969 ~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1034 (1054)
.||||+++++.||=.+|+. ...++||||.++|||.+...+-.++.++. +..-++++||+-
T Consensus 149 ~LSGGQQQRLcIARalAv~----PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~yTIviVTHnm 208 (253)
T COG1117 149 GLSGGQQQRLCIARALAVK----PEVLLMDEPTSALDPISTLKIEELITELK--KKYTIVIVTHNM 208 (253)
T ss_pred CCChhHHHHHHHHHHHhcC----CcEEEecCcccccCchhHHHHHHHHHHHH--hccEEEEEeCCH
Confidence 4899999999998777742 34567999999999998877777777776 889999999975
No 410
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.94 E-value=5.1e-06 Score=94.71 Aligned_cols=70 Identities=24% Similarity=0.246 Sum_probs=56.3
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||.+++||..++ .++++++||||++|||+.++..+.+.|.++. + -||++||+........+.
T Consensus 440 ~~~~LSgGe~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~~~~~~~d~ 509 (552)
T TIGR03719 440 KVGQLSGGERNRVHLAKTLK----SGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRWFLDRIATH 509 (552)
T ss_pred chhhCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHHHHHHhCCE
Confidence 35679999999999997665 4788999999999999999988888888763 4 499999998544444443
No 411
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.93 E-value=1.4e-05 Score=91.53 Aligned_cols=65 Identities=34% Similarity=0.393 Sum_probs=55.9
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
..||||||++++||=.+. .+.|++||||++++||+.++..+.+.|.++. .+.-+|+|||+.....
T Consensus 474 ~~LSgGqrqRialARall----~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~ 538 (574)
T PRK11160 474 RQLSGGEQRRLGIARALL----HDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGLE 538 (574)
T ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHH
Confidence 458999999999985543 5779999999999999999999999988876 7899999999996443
No 412
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.93 E-value=9.5e-06 Score=93.12 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=55.6
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
..||||||++++||-.+. .+.|+++||||+++||+.++..+.+.|.++. .+.-+|+|||+....
T Consensus 470 ~~LSgGq~qrl~lARall----~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~ 533 (585)
T TIGR01192 470 NRLSGGERQRLAIARAIL----KNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLSTV 533 (585)
T ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHH
Confidence 458999999999986655 5889999999999999999999988888875 688999999999544
No 413
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.91 E-value=8.6e-06 Score=83.00 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=62.2
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.++.||||+++++|||=.|+ ...+.++||||+++||..-|..+-.-|.++.+..+.-+|++||+.......++++
T Consensus 133 ~p~qLSGGQqQRVALARAL~----~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI 207 (352)
T COG3842 133 KPHQLSGGQQQRVALARALV----PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRI 207 (352)
T ss_pred ChhhhChHHHHHHHHHHHhh----cCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccce
Confidence 46789999999999986665 3345778999999999999988888888877778999999999997766666664
No 414
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.91 E-value=6.7e-06 Score=94.76 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=56.2
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
++..||||||++++||..++ .+.+++|||||+.+||..++..+.+.|.++ .+ -||++||+........++
T Consensus 427 ~~~~LSgGekqRl~La~~l~----~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~~~~~~~d~ 496 (638)
T PRK10636 427 ETRRFSGGEKARLVLALIVW----QRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRHLLRSTTDD 496 (638)
T ss_pred chhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHHHHHHhCCE
Confidence 35679999999999997776 478899999999999999998888888876 34 699999988543333333
No 415
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.91 E-value=1.1e-05 Score=95.32 Aligned_cols=64 Identities=31% Similarity=0.383 Sum_probs=55.6
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
..||||||++++||=.+. ...|++|||||+++||+.+...+.+.|.++. .++-+|+|||+....
T Consensus 600 ~~LSgGQrQRlalARall----~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~~~ 663 (694)
T TIGR03375 600 RSLSGGQRQAVALARALL----RDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTSLL 663 (694)
T ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH
Confidence 358999999999985543 6789999999999999999999999998876 789999999999643
No 416
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.90 E-value=1.1e-05 Score=92.58 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=55.8
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
..||||||++++||-.+. .+.|+++||||+++||+.++..+.+.|.++. .+.-+|+|||+.....
T Consensus 450 ~~LSgGq~qRi~lARall----~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~ 514 (569)
T PRK10789 450 VMLSGGQKQRISIARALL----LNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALT 514 (569)
T ss_pred CcCCHHHHHHHHHHHHHh----cCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHH
Confidence 458999999999986554 5889999999999999999999999888875 7889999999985443
No 417
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.90 E-value=1.2e-05 Score=93.21 Aligned_cols=64 Identities=25% Similarity=0.335 Sum_probs=55.1
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
..||||||++++||=.+. ..+|+++||||+++||+.++..+...|.++. ++.-+|+|||+....
T Consensus 475 ~~LSgGq~Qrl~laRal~----~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~~~ 538 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAIL----KDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLATV 538 (576)
T ss_pred CcCCHHHHHHHHHHHHHH----hCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchHHH
Confidence 358999999999985443 5789999999999999999999888898876 789999999999543
No 418
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.90 E-value=1.3e-05 Score=91.57 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=52.9
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
..||||||++++||=.+ ..+.|++|||||+++||+.++..+.+.+.+.....+.-+|+|||+...
T Consensus 469 ~~LSgGq~qRlalaRal----l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~ 533 (555)
T TIGR01194 469 TALSTGQQKRLALICAW----LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY 533 (555)
T ss_pred ccCCHHHHHHHHHHHHH----HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 67999999999988544 468899999999999999999887776654222368899999999853
No 419
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=1.9e-05 Score=76.10 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=24.8
Q ss_pred ceEEEeCC-ceEEEEcCCCCchHHHHHHHHHHh
Q 001556 35 SLQIELGE-WVNFITGQNGSGKSAILTALCIAF 66 (1054)
Q Consensus 35 ~~~i~f~~-~~~~I~G~NGsGKStil~ai~~~l 66 (1054)
+.++.+.+ .++.|+|||||||||++.+|.-.+
T Consensus 22 ~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 22 DISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred ccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555555 499999999999999999886433
No 420
>PLN03211 ABC transporter G-25; Provisional
Probab=97.89 E-value=1.9e-05 Score=90.72 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=56.0
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
...||||||.+++||..++. +.+++++|||++|||..++..+.+.|.+++ ..+.-+|++||++.
T Consensus 204 ~~~LSgGerqRv~ia~aL~~----~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~-~~g~TvI~~sH~~~ 267 (659)
T PLN03211 204 IRGISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDATAAYRLVLTLGSLA-QKGKTIVTSMHQPS 267 (659)
T ss_pred CCCcChhhhhHHHHHHHHHh----CCCEEEEeCCCCCcCHHHHHHHHHHHHHHH-hCCCEEEEEecCCC
Confidence 45689999999999977763 568899999999999999999999999987 36788999999985
No 421
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.88 E-value=0.052 Score=57.12 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 186 QVNDLLQSIYNHLNKGDALVLELEA 210 (1054)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~~~~~~~~ 210 (1054)
.+++.+..+-+++..++.....++.
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~ 32 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLES 32 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3344444433333333333333333
No 422
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.87 E-value=0.0072 Score=57.66 Aligned_cols=6 Identities=33% Similarity=0.180 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001556 455 SLLRAI 460 (1054)
Q Consensus 455 ~~~~~l 460 (1054)
.....+
T Consensus 178 ~~yeri 183 (239)
T COG1579 178 SEYERI 183 (239)
T ss_pred HHHHHH
Confidence 333333
No 423
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.86 E-value=1.5e-05 Score=90.97 Aligned_cols=61 Identities=34% Similarity=0.408 Sum_probs=52.6
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1034 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1034 (1054)
..||||||++++||=.+ +.+.|++||||++++||+.+...+.+.|.+.. .+.-+|+|||+.
T Consensus 469 ~~LSGGQrQRiaiARal----l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARAL----LADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHH----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 35899999999988433 36889999999999999999999988888765 789999999974
No 424
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.86 E-value=9.2e-06 Score=92.60 Aligned_cols=70 Identities=23% Similarity=0.225 Sum_probs=56.0
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..|||||+.+++||..++ .++++++||||++|||+.++..+.+.|.++. ++ ||++||+........+.
T Consensus 442 ~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~t-vi~vtHd~~~~~~~~d~ 511 (556)
T PRK11819 442 KVGVLSGGERNRLHLAKTLK----QGGNVLLLDEPTNDLDVETLRALEEALLEFP---GC-AVVISHDRWFLDRIATH 511 (556)
T ss_pred chhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---Ce-EEEEECCHHHHHHhCCE
Confidence 35679999999999997665 5889999999999999999988888887762 44 99999997544444433
No 425
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.85 E-value=1.9e-05 Score=90.26 Aligned_cols=65 Identities=25% Similarity=0.287 Sum_probs=54.7
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
..||||||++++||=.+ +.+.|+++||||+++||+.++..+.+.|.++. ..+..+|+|||+....
T Consensus 453 ~~LSgGq~qrl~lARal----l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~ith~~~~~ 517 (544)
T TIGR01842 453 ATLSGGQRQRIALARAL----YGDPKLVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRPSLL 517 (544)
T ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCccccCHHHHHHHHHHHHHHh-hCCCEEEEEeCCHHHH
Confidence 45899999999998554 46789999999999999999998888888764 3578999999998643
No 426
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.85 E-value=1.6e-05 Score=91.52 Aligned_cols=66 Identities=23% Similarity=0.327 Sum_probs=55.0
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
..||||||++++||=.+ ....|++||||+++++|+.+...+.+.|.++. ++..+|+|+|+..+...
T Consensus 464 ~~LSgGQrQrlaiARal----l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlsti~~ 529 (567)
T COG1132 464 VNLSGGQRQRLAIARAL----LRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLSTIKN 529 (567)
T ss_pred ccCCHHHHHHHHHHHHH----hcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhHHHh
Confidence 35799999999998544 34559999999999999999999999998776 67799999999954444
No 427
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=1.1e-05 Score=91.69 Aligned_cols=70 Identities=21% Similarity=0.186 Sum_probs=55.9
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..|||||+.+++||..++ .+++++++|||+++||+.++..+.+.|.++ +.-||++||+........+.
T Consensus 435 ~~~~LSgGq~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~ 504 (530)
T PRK15064 435 SVKVLSGGEKGRMLFGKLMM----QKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATR 504 (530)
T ss_pred cccccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCE
Confidence 35679999999999987776 478899999999999999998888777765 33699999998644444433
No 428
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=1.4e-05 Score=90.84 Aligned_cols=70 Identities=19% Similarity=0.065 Sum_probs=54.4
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||.+++||..|+ ...++++||||+++||+.++..+.+.|.+ .+.-||++||+........++
T Consensus 152 ~~~~LSgGq~qrv~lA~aL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 152 LMSEVAPGWKLRVLLAQALF----SNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred chhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcce
Confidence 35679999999999997776 36789999999999999998776666643 467799999998544443433
No 429
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.84 E-value=2.2e-05 Score=79.62 Aligned_cols=75 Identities=25% Similarity=0.268 Sum_probs=57.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCce
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIK 1045 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~ 1045 (1054)
+..||||+|+++||+=.+. .....++||||+++||..-|..+-..+.++-+.-+.-+|++||+......-++++.
T Consensus 131 P~~LSGGQrQRVAlaRAlV----r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~ 205 (338)
T COG3839 131 PLQLSGGQRQRVALARALV----RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIV 205 (338)
T ss_pred cccCChhhHHHHHHHHHHh----cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEE
Confidence 5679999999999985443 44556789999999999888777777777655677899999999965444444543
No 430
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=1.5e-05 Score=93.42 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=58.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcC-CCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTE-APFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~-~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..|||||++++.||-.++. .+ ..++|||||++|||+.....++..|.++. ..+..||+|||+.... ...++
T Consensus 484 ~~~tLSGGE~QRv~LA~aL~~---~~~~~llILDEPtagLD~~~~~~L~~~L~~L~-~~G~TVIvVeHd~~~i-~~aD~ 557 (924)
T TIGR00630 484 AAGTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHQRDNERLINTLKRLR-DLGNTVIVVEHDEETI-RAADY 557 (924)
T ss_pred CcCcCCHHHHHHHHHHHHHhh---CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHH-hhCCE
Confidence 456799999999999977762 22 25899999999999999999999998885 5688999999998533 34433
No 431
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.83 E-value=3.4e-05 Score=74.83 Aligned_cols=67 Identities=24% Similarity=0.206 Sum_probs=56.4
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
.+.+||||+|++++||=.+|. ....++-||++++|||..-..+..+|.++-+.-|.-+++|||.-..
T Consensus 138 yP~qLSGGQKQRVaIARALa~----~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V 204 (339)
T COG1135 138 YPAQLSGGQKQRVAIARALAN----NPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV 204 (339)
T ss_pred CchhcCcchhhHHHHHHHHhc----CCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence 467899999999999977773 2235569999999999999999999988877899999999998643
No 432
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=9.4e-05 Score=75.34 Aligned_cols=79 Identities=18% Similarity=0.064 Sum_probs=56.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhh-----hcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHE-----MTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~-----~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
.+.+|+|++..+++++.+|... +..+|+++||||+++||+..+..+...|.++ .|+|++||+........
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~-----~q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR-----VQTFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC-----CCEEEEeCCchhccchh
Confidence 5567999999999999887432 3567888999999999999876655555442 38999998875444322
Q ss_pred -CCceEEecC
Q 001556 1042 -ERIKKQQMA 1050 (1054)
Q Consensus 1042 -~~~~v~~~~ 1050 (1054)
+.-+|..+.
T Consensus 256 ~~~~~i~~l~ 265 (270)
T cd03242 256 LRRAQIFRVD 265 (270)
T ss_pred ccCccEEEEe
Confidence 233455443
No 433
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.9e-05 Score=70.38 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=45.7
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
++.+||.|++-++|||=++ .++.|+-|+|||++++|..+......+|..-+ .++.=||+-||++..
T Consensus 127 p~~~LSAGQqRRvAlArL~----ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~-~~GGiVllttHq~l~ 192 (209)
T COG4133 127 PVGQLSAGQQRRVALARLW----LSPAPLWILDEPFTALDKEGVALLTALMAAHA-AQGGIVLLTTHQPLP 192 (209)
T ss_pred chhhcchhHHHHHHHHHHH----cCCCCceeecCcccccCHHHHHHHHHHHHHHh-cCCCEEEEecCCccC
Confidence 4567888888888877443 36678888888888888877666555555443 556667777777753
No 434
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.83 E-value=0.0005 Score=80.08 Aligned_cols=30 Identities=33% Similarity=0.405 Sum_probs=24.4
Q ss_pred eEEEeCC--ceEEEEcCCCCchHHHHHHHHHH
Q 001556 36 LQIELGE--WVNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 36 ~~i~f~~--~~~~I~G~NGsGKStil~ai~~~ 65 (1054)
.++.+++ .+.+|+||||+||||+|..|..+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 4556654 48899999999999999998754
No 435
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.81 E-value=0.045 Score=54.48 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHHHHHH
Q 001556 211 TIKPTEKELSELQRKI 226 (1054)
Q Consensus 211 ~~~~l~~~~~~l~~~~ 226 (1054)
.+..+..++...+.++
T Consensus 82 qlr~~rtel~~a~~~k 97 (499)
T COG4372 82 QLRALRTELGTAQGEK 97 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 436
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.81 E-value=2e-05 Score=90.02 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
..||||||++++||=.+ +.+.|+++||||+++||+.++..+.+.|.+.....+.-+|+|||+...
T Consensus 448 ~~LSgGq~qRl~lARal----~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 448 LKLSKGQKKRLALLLAL----AEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512 (547)
T ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence 46899999999988554 358899999999999999999888888876543347899999999853
No 437
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3.5e-05 Score=78.27 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=41.8
Q ss_pred CCCCCCCCCCceEeEEEEEecc---cccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 10 SGYGPQRSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 10 ~~~~~~~~~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
++.+++..++..+..+.+. |+ .+.+..+.+.+| +.+|+|+|||||||++.+|.-
T Consensus 3 ~~~~~~~~~~l~~~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 3 EGVQNVAQPQIKVENLNLW-YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred cCcccccceeEEEeeeEEE-eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3567777887777777763 32 246677788776 899999999999999999873
No 438
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.80 E-value=0.017 Score=55.17 Aligned_cols=63 Identities=8% Similarity=0.125 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001556 637 IKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNS 699 (1054)
Q Consensus 637 l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 699 (1054)
+..+...+......+..++..+..+...+..++.++..+..++..++.++..+..++...+..
T Consensus 19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444444444444444444433
No 439
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.80 E-value=2e-05 Score=93.05 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=55.6
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
..||||||++++||=.+ ....|+++||||+++||+.++..+.+.|.++. .+.-+|+|||+....
T Consensus 592 ~~LSgGq~qri~lARal----l~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~ 655 (694)
T TIGR01846 592 ANLSGGQRQRIAIARAL----VGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTV 655 (694)
T ss_pred CCCCHHHHHHHHHHHHH----HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHH
Confidence 35899999999998655 36789999999999999999999999998876 788999999999643
No 440
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.79 E-value=0.11 Score=58.25 Aligned_cols=47 Identities=6% Similarity=0.149 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 637 IKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAE 683 (1054)
Q Consensus 637 l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~ 683 (1054)
+.....++...+..+.........+......++.++...+..+..+.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443333
No 441
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=8.1e-05 Score=66.43 Aligned_cols=35 Identities=34% Similarity=0.420 Sum_probs=28.9
Q ss_pred cccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 001556 32 CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1054)
Q Consensus 32 ~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~l 66 (1054)
-|.+..|.|.+| +..|+||||+||||++..|.-.+
T Consensus 17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc
Confidence 366777888875 88899999999999999887544
No 442
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=4.5e-05 Score=77.94 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=38.7
Q ss_pred CCCCCCceEeEEEEE--ecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 001556 14 PQRSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1054)
Q Consensus 14 ~~~~~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~l 66 (1054)
++..+++.+..|.+. +...+.+..+.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 15 ~~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 15 NPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred CCCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 366667777777664 111246677788776 88999999999999999986443
No 443
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=4.3e-05 Score=70.72 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=21.2
Q ss_pred cceEEEeCCc-eEEEEcCCCCchHHHHHHH
Q 001556 34 SSLQIELGEW-VNFITGQNGSGKSAILTAL 62 (1054)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKStil~ai 62 (1054)
++..+.+.+| +++|.|||||||||+..+|
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i 50 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTI 50 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHH
Confidence 5556666664 8888888888888866555
No 444
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.78 E-value=0.052 Score=54.07 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001556 185 QQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSEL 222 (1054)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 222 (1054)
+++...+......+..........+.+.+....++...
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~ 114 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKA 114 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433333
No 445
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.77 E-value=2.2e-05 Score=89.61 Aligned_cols=70 Identities=26% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
.+..||||||.+++||..|+ .+.++++||||+++||+.++..+.+.|.++ +.=||+|||+........+.
T Consensus 158 ~~~~LSgGqkqrv~la~al~----~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~ 227 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLL----SKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGW 227 (552)
T ss_pred chhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCe
Confidence 35679999999999997775 467899999999999999988777777664 23699999988544443333
No 446
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.77 E-value=7.4e-06 Score=76.68 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=0.0
Q ss_pred Eecccc---cceEEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 001556 28 ENFMCH---SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1054)
Q Consensus 28 ~nf~~~---~~~~i~f~~~-~~~I~G~NGsGKStil~ai~ 63 (1054)
..|+.+ ++++++..+| ++.|+|||||||||+++.|.
T Consensus 12 k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit 51 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT 51 (250)
T ss_pred eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec
No 447
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.77 E-value=5.3e-05 Score=68.13 Aligned_cols=61 Identities=30% Similarity=0.329 Sum_probs=44.5
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1034 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1034 (1054)
.+||||||-++-||=.||. ...|++|||||+|+||....- ++.++...+..+.=| +||-|.
T Consensus 138 ~sLSGGERRR~EIARaLa~----~P~fiLLDEPFAGVDPiaV~d-Iq~iI~~L~~rgiGv-LITDHN 198 (243)
T COG1137 138 YSLSGGERRRVEIARALAA----NPKFILLDEPFAGVDPIAVID-IQRIIKHLKDRGIGV-LITDHN 198 (243)
T ss_pred cccccchHHHHHHHHHHhc----CCCEEEecCCccCCCchhHHH-HHHHHHHHHhCCceE-EEcccc
Confidence 4589999999999988875 556888999999999986543 555555554555555 455554
No 448
>PRK14079 recF recombination protein F; Provisional
Probab=97.76 E-value=0.0004 Score=73.28 Aligned_cols=62 Identities=31% Similarity=0.281 Sum_probs=45.6
Q ss_pred CCCCCChhhHHHHHHHHHhh----hh-cCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCC
Q 001556 968 RGLSGGERSFSTLCFALALH----EM-TEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHD 1034 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~----~~-~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~ 1034 (1054)
..+|+||+-.+++|+.+|-. .. ..+|+++||||+++||..++..++..|.. ..|+|+.|.+.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~-----~~q~~it~t~~ 328 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS-----LPQAIVAGTEA 328 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc-----CCcEEEEcCCC
Confidence 45799999999999999833 32 45788899999999999887655444432 34876665543
No 449
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.76 E-value=2.4e-05 Score=89.20 Aligned_cols=71 Identities=28% Similarity=0.272 Sum_probs=55.7
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..||||||++++||..++ .+.++++||||+++||+.++..+.+.|.++. + =||++||+........+++
T Consensus 160 ~~~~LSgGqkqrv~la~al~----~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~-tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLL----EKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---G-TVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred chhhcCHHHHHHHHHHHHHh----CCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---C-eEEEEeCCHHHHHhhcCeE
Confidence 35679999999999997776 5778999999999999999888777777652 3 5899999886444444443
No 450
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.75 E-value=3.7e-05 Score=73.15 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=34.9
Q ss_pred CceEeEEEEEecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 001556 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1054)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~l 66 (1054)
++.+..+... | .+.+.++.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 4 ~l~~~~l~~~-~-~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 4 VLEVRGLSVK-G-AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEeccEEE-e-eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3555555543 2 467888888886 88999999999999999987443
No 451
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.75 E-value=0.12 Score=57.99 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcchHHH
Q 001556 636 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEI 715 (1054)
Q Consensus 636 ~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 715 (1054)
+...-+.++.+++.+++.+...+..+...+..+...+..+..+..........++.++.-.+.-..- ....+..+.+|
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l--L~d~e~ni~kL 399 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL--LPDAEENIAKL 399 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHH
Confidence 3444455555555555555555555555555555555555555555444444444444322221111 00033445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001556 716 SQEISNIQEEIQEKEIILEKL 736 (1054)
Q Consensus 716 ~~~~~~l~~~~~~~~~~~~~~ 736 (1054)
+.-+..-...+..+..+.+..
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~ 420 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKH 420 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544433
No 452
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.75 E-value=1.7e-05 Score=91.78 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
.+..||||||++++||..++ .+.++++||||+.+||..++..+.+.|.++ +.=||+|||+........+
T Consensus 437 ~~~~LSgGekqRl~la~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d 505 (635)
T PRK11147 437 PVKALSGGERNRLLLARLFL----KPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVT 505 (635)
T ss_pred hhhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcC
Confidence 45679999999999987665 367899999999999999987666666554 3369999999854444333
No 453
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=4.9e-05 Score=83.09 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=55.2
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
..||||+|+++|||=.| +...+++||||++++||.++...+-..|-+.. +++-||+|.|+..+...++
T Consensus 603 ~qLSGGQKQRIAIARAL----lr~P~VLILDEATSALDaeSE~lVq~aL~~~~--~~rTVlvIAHRLSTV~~Ad 670 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARAL----LRNPRVLILDEATSALDAESEYLVQEALDRLM--QGRTVLVIAHRLSTVRHAD 670 (716)
T ss_pred ccccchHHHHHHHHHHH----hcCCCEEEEechhhhcchhhHHHHHHHHHHhh--cCCeEEEEehhhhHhhhcc
Confidence 35799999999988433 46677889999999999998877777777776 7799999999997555544
No 454
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.73 E-value=0.14 Score=57.92 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 635 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKEL 691 (1054)
Q Consensus 635 ~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 691 (1054)
.+|..|++++.+++.+...+...+...+.++...+..+......+..|...+..+..
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777777777777777777776666666666666666666655555444
No 455
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.73 E-value=3.2e-05 Score=91.79 Aligned_cols=60 Identities=27% Similarity=0.327 Sum_probs=51.6
Q ss_pred CCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 969 ~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
.||||||++++||=.+ +...|+++||||+++||+.++..+.+.|.+ .++-+|+|||+...
T Consensus 615 ~LSGGQrQRiaLARal----l~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~ 674 (710)
T TIGR03796 615 NLSGGQRQRLEIARAL----VRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLST 674 (710)
T ss_pred CCCHHHHHHHHHHHHH----hhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHH
Confidence 5899999999998544 467899999999999999999888888765 57899999999853
No 456
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.72 E-value=5.6e-05 Score=68.25 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=26.9
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+.++.|.+| +.+|+||||+||||++++|.-
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 46667788876 888999999999999999843
No 457
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.72 E-value=3.3e-05 Score=71.76 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=26.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTAL 62 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai 62 (1054)
+.+..+.|.+| +.+|+|||||||||++.+|
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 46677788775 8899999999999999987
No 458
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.71 E-value=3.8e-05 Score=91.04 Aligned_cols=64 Identities=25% Similarity=0.356 Sum_probs=53.2
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
..||||||++++||=.+ +...|+++|||++++||+.+...+.+.|.++ .++-+|+|||+.....
T Consensus 610 ~~LSgGQrQRialARal----l~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~~ 673 (708)
T TIGR01193 610 SSISGGQKQRIALARAL----LTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVAK 673 (708)
T ss_pred CCCCHHHHHHHHHHHHH----hhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHHH
Confidence 34899999999988444 3577999999999999999999888888774 4788999999996443
No 459
>PLN03073 ABC transporter F family; Provisional
Probab=97.71 E-value=2.6e-05 Score=90.15 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=52.4
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVK 1039 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~ 1039 (1054)
++..||||||++++||..++ .+.++++||||+++||..++..+...|..+ .+ =||++||+......
T Consensus 624 ~~~~LSgGqkqRvaLAraL~----~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~i~~ 689 (718)
T PLN03073 624 PMYTLSGGQKSRVAFAKITF----KKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHLISG 689 (718)
T ss_pred CccccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHHHHH
Confidence 35679999999999987665 478899999999999999987776666554 34 69999998854333
No 460
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=5.2e-05 Score=76.08 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=26.6
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+.++.|.+| +.+|+|||||||||++.+|.-
T Consensus 18 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45567777775 899999999999999999863
No 461
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=2.9e-05 Score=69.42 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=56.6
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGER 1043 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~ 1043 (1054)
....||||+|+++.+|..+| ....+++||||.-|||-.+...++..|.+++..-+.-++++-|.=.-...+++.
T Consensus 132 yLd~LSGGQrQRAfIAMVla----QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~ 205 (252)
T COG4604 132 YLDELSGGQRQRAFIAMVLA----QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDH 205 (252)
T ss_pred hHHhcccchhhhhhhheeee----ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhh
Confidence 36789999999999886554 567788899999999999999999999999876666666665544323334443
No 462
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.69 E-value=5.6e-05 Score=76.86 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCCCCCceEeEEEEE--ecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 001556 14 PQRSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 14 ~~~~~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~ 65 (1054)
.+..+++.+..+.+. +...+.+.++.|.+| +.+|+|||||||||++.+|.-.
T Consensus 8 ~~~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred cCCCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344445555555543 111245667777775 8999999999999999998643
No 463
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.68 E-value=0.011 Score=52.39 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 646 HVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDV 696 (1054)
Q Consensus 646 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l 696 (1054)
.+......+...+..++........++..+......++.++..+...+..+
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 464
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=6.3e-05 Score=79.02 Aligned_cols=68 Identities=28% Similarity=0.328 Sum_probs=56.8
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQG 1041 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~ 1041 (1054)
..||||||++++|+=.+ ...+|+++|||++++||....+.+++.+.+.. .+.-+|+|-|+-.....++
T Consensus 486 ~~LSGGekQrvslaRa~----lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll~~~D 553 (591)
T KOG0057|consen 486 LMLSGGEKQRVSLARAF----LKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLDLLKDFD 553 (591)
T ss_pred cccccchHHHHHHHHHH----hcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecchhHhcCC
Confidence 35799999999987332 57899999999999999999999999999866 8999999999886443333
No 465
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.67 E-value=7e-05 Score=72.92 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=32.8
Q ss_pred ceEeEEEEE--ecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 001556 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 20 m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~ 65 (1054)
+.+..+... +...+.+.++.|.+| +.+|+|||||||||++..|.-.
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 445555443 111246677888776 9999999999999999987643
No 466
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.67 E-value=3.8e-05 Score=89.01 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=54.0
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
.+..|||||+.+++||-.|+ .+.++++||||+++||..++..+.+.|.++ ..-||+|||+........+
T Consensus 153 ~~~~LSgGekqRv~LAraL~----~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d 221 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALV----SNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMAT 221 (635)
T ss_pred chhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcC
Confidence 45679999999999997776 367899999999999999987777777664 2479999998854333333
No 467
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.67 E-value=3.7e-05 Score=84.36 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=52.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
++..||||||.++.||.++. .+..++|||||+-+||-..+..+.+.|..| ..=||||||.+.
T Consensus 436 ~v~~LSGGEk~Rl~La~ll~----~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~ 497 (530)
T COG0488 436 PVGVLSGGEKARLLLAKLLL----QPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRY 497 (530)
T ss_pred chhhcCHhHHHHHHHHHHhc----cCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHH
Confidence 57789999999999997665 378899999999999999987777777776 457999999984
No 468
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.66 E-value=7.2e-05 Score=72.95 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=32.0
Q ss_pred ceEeEEEEE--ecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 001556 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 20 m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~ 65 (1054)
..+..+.+. +...+.+.++.+.+| +.+|+|||||||||++..|.-.
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444555543 111246667777776 8899999999999999987643
No 469
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=6.4e-05 Score=76.12 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=26.8
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+.++.+.+| +.+|+|||||||||++.+|.-
T Consensus 19 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45666777776 899999999999999999863
No 470
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.66 E-value=0.00013 Score=85.60 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001556 883 KILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLK 920 (1054)
Q Consensus 883 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 920 (1054)
.+..+..++..+...+..++.........|+..+..++
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~ll 644 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLL 644 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555666666666666666566665554444
No 471
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.65 E-value=7.1e-05 Score=75.97 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCceEeEEEEE--ecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 001556 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1054)
Q Consensus 18 ~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~l 66 (1054)
|++.+..+.+. +...+.+..+.+.+| +++|+|||||||||++.+|.-.+
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44555555543 112246667777776 89999999999999999997543
No 472
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.64 E-value=3.9e-05 Score=97.00 Aligned_cols=73 Identities=27% Similarity=0.344 Sum_probs=59.6
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..||||||.+++||..|+ .+.+++++|||++|||+.+++.+.++|.++. .+.-||++||+........+++
T Consensus 1058 ~~~~LSGGqKQRLsLArALi----~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdmdea~~laDrI 1130 (2272)
T TIGR01257 1058 EAQDLSGGMQRKLSVAIAFV----GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHMDEADLLGDRI 1130 (2272)
T ss_pred ChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEE
Confidence 35679999999999987776 3678899999999999999999999999985 5888999999875443334433
No 473
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.64 E-value=9e-05 Score=74.40 Aligned_cols=70 Identities=26% Similarity=0.356 Sum_probs=58.4
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQ 1040 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~ 1040 (1054)
.++..|||+|+++|||=.+.| ...|+++|||+++||-.-...++++|..+-..-+.=|+||||.-. .+++
T Consensus 423 YPhEFSGGQRQRIAIARAliL----kP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrA 492 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALIL----KPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRA 492 (534)
T ss_pred CCcccCcchhhHHHHHHHHhc----CCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHH
Confidence 356779999999999976664 355888999999999999999999999987677889999999874 4443
No 474
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.64 E-value=4.3e-05 Score=90.16 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=52.4
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLV 1038 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~ 1038 (1054)
..||||||++++||=.+ +...|+++||||+++||+.+.+.+.+.|.++ +.-+|+|||+.....
T Consensus 587 ~~LSGGQrQRialARAl----l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~ 649 (686)
T TIGR03797 587 GTLSGGQRQRLLIARAL----VRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIR 649 (686)
T ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHH
Confidence 35899999999988544 3678999999999999999998888888764 468999999985443
No 475
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=8e-05 Score=75.54 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=33.8
Q ss_pred CceEeEEEEEecc---cccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 001556 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1054)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~l 66 (1054)
++.+..+.+. |+ .+.+..+.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 6 ~i~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 6 ILSTKNLNLW-YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred eEEEeeeEEE-ECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 3445555443 22 246677788887 99999999999999999997433
No 476
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=5.3e-05 Score=74.41 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=28.2
Q ss_pred ccceEEEeCCceEEEEcCCCCchHHHHHHHHH
Q 001556 33 HSSLQIELGEWVNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 33 ~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+..+.+.+|+.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHhC
Confidence 46677888889999999999999999999963
No 477
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=8.5e-05 Score=68.80 Aligned_cols=62 Identities=27% Similarity=0.337 Sum_probs=49.6
Q ss_pred CCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 969 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 969 ~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
.+|||||-+.=|+=++++ ...|.||||+|+|||-.+.+.+..-+-.+. +.++=+++|||...
T Consensus 144 GFSGGEkKR~EilQ~~~l----ePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~~~liITHy~r 205 (251)
T COG0396 144 GFSGGEKKRNEILQLLLL----EPKLAILDEPDSGLDIDALKIVAEGINALR-EEGRGVLIITHYQR 205 (251)
T ss_pred CcCcchHHHHHHHHHHhc----CCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCCeEEEEecHHH
Confidence 369999999988744442 345778999999999998877776666654 88999999999984
No 478
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.63 E-value=4e-05 Score=69.31 Aligned_cols=31 Identities=39% Similarity=0.525 Sum_probs=25.1
Q ss_pred ceEEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 001556 35 SLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~ 65 (1054)
+..+.|.+| +++|+|+|||||||++.+|.-.
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeeccc
Confidence 456677665 9999999999999999877543
No 479
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.63 E-value=7.9e-05 Score=85.94 Aligned_cols=63 Identities=27% Similarity=0.328 Sum_probs=55.1
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDV 1035 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~ 1035 (1054)
..||||||.+++||..++ .+.+++++|||++|||+..+..+++.|.+++ ..+.-+|++||++.
T Consensus 165 ~~LSgGqrkRvsia~aL~----~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~-~~g~tvi~~~hq~~ 227 (617)
T TIGR00955 165 KGLSGGERKRLAFASELL----TDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA-QKGKTIICTIHQPS 227 (617)
T ss_pred CCcCcchhhHHHHHHHHH----cCCCEEEeeCCCcchhHHHHHHHHHHHHHHH-hCCCEEEEEeCCCC
Confidence 568999999999997665 5668889999999999999999999999987 35788999999984
No 480
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.63 E-value=7.5e-05 Score=75.39 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=27.4
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46667788776 999999999999999999863
No 481
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.63 E-value=8.9e-05 Score=71.92 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=32.0
Q ss_pred ceEeEEEEE--ecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 20 m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+..+.+. +..-+.+.++.|.+| +.+|+|||||||||++.+|.-
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 345555543 112246667788775 899999999999999998853
No 482
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=4e-05 Score=88.50 Aligned_cols=63 Identities=21% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
++..||||||.+++||-.|+ ...++++||||+.+||..+...+.+.|.++ +.-||+|||+...
T Consensus 146 ~~~~LSgGerqRv~LA~aL~----~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~ 208 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALI----CRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDF 208 (638)
T ss_pred chhhcCHHHHHHHHHHHHHc----cCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 45679999999999997776 367899999999999999876665555553 4579999999853
No 483
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.63 E-value=6e-05 Score=88.71 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=59.3
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhhcC-CCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCCCc
Q 001556 966 DTRGLSGGERSFSTLCFALALHEMTE-APFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERI 1044 (1054)
Q Consensus 966 ~~~~lSgGErs~~~lal~~al~~~~~-~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~ 1044 (1054)
.+..|||||++++.||-.|+. .+ ..++|||||+++||+.....++..|.++. ..+.-||||||+...+ ...+++
T Consensus 486 ~~~~LSgGE~QRv~LA~aL~~---~~~~~llILDEPtagLd~~~~~~L~~~L~~L~-~~G~TVIvVeH~~~~i-~~aD~v 560 (943)
T PRK00349 486 SAGTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHQRDNDRLIETLKHLR-DLGNTLIVVEHDEDTI-RAADYI 560 (943)
T ss_pred chhhCCHHHHHHHHHHHHHhh---CCCCcEEEecCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHH-HhCCEE
Confidence 466799999999999977763 23 25899999999999999999999998885 5688999999998543 334443
No 484
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=8.1e-05 Score=68.92 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=28.5
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~l 66 (1054)
+.+..+.|.+| +++|+|+||+||||++++|...+
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45667788775 99999999999999999997554
No 485
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.63 E-value=6.8e-05 Score=88.31 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||++++.||..|+.. ..+.+++|||||++|||......+.+.|.++. ..+.-||+|||+....
T Consensus 828 ~~tLSgGEkQRl~LAraL~~~-p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~-~~G~TVIiitH~~~~i 896 (943)
T PRK00349 828 ATTLSGGEAQRVKLAKELSKR-STGKTLYILDEPTTGLHFEDIRKLLEVLHRLV-DKGNTVVVIEHNLDVI 896 (943)
T ss_pred cccCCHHHHHHHHHHHHHhcC-CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHH
Confidence 456899999999999877622 12238999999999999999988888888875 4678999999998543
No 486
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=8.7e-05 Score=73.43 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.1
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+.++.|.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46667788775 889999999999999999873
No 487
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=8.7e-05 Score=74.90 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=27.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+.++.|.+| +.+|+|||||||||++.+|.-
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46667788775 999999999999999999873
No 488
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.62 E-value=3.9e-05 Score=87.62 Aligned_cols=63 Identities=29% Similarity=0.401 Sum_probs=54.1
Q ss_pred CCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCC
Q 001556 968 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVG 1036 (1054)
Q Consensus 968 ~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~ 1036 (1054)
..||||||++++||=.+ +.+.|+++||||++++|+.+...+.+.|.++. .+.=+|+|||+...
T Consensus 457 ~~LSgGq~qri~laRal----~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~ 519 (529)
T TIGR02857 457 AGLSGGQAQRLALARAF----LRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLAL 519 (529)
T ss_pred ccCCHHHHHHHHHHHHH----hcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHH
Confidence 45899999999998544 35679999999999999999999988888875 78999999999853
No 489
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.18 Score=55.97 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 001556 234 EITQDLQRLKKKL 246 (1054)
Q Consensus 234 ~~~~~~~~l~~~~ 246 (1054)
++..++.-++.++
T Consensus 703 ql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 703 QLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444444443
No 490
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.62 E-value=0.0001 Score=74.17 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=34.7
Q ss_pred CCCceEeEEEEE--ecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 17 SGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 17 ~~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
.+++.+..+.+. +..-+.+..+.|.+| +.+|+|||||||||++..|.-
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 345666666554 111246677788776 999999999999999998873
No 491
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.62 E-value=6.2e-05 Score=68.97 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=24.4
Q ss_pred ceEEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 001556 35 SLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~ 65 (1054)
+..+.+.+| +.+|+||.||||||+|.+|...
T Consensus 20 gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CcceeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 344455554 9999999999999999998653
No 492
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.62 E-value=9.6e-05 Score=73.55 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=37.3
Q ss_pred CCCCceEeEEEEE--e---cccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 001556 16 RSGAGTITRVRLE--N---FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 16 ~~~~m~i~~i~l~--n---f~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~ 65 (1054)
..+++.+..+.+. + ...+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456777777765 1 12356777888775 9999999999999999998643
No 493
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.61 E-value=9.1e-05 Score=73.04 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=27.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46667777776 889999999999999998863
No 494
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=8.7e-05 Score=75.16 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=27.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~ 65 (1054)
+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45666777776 8999999999999999998743
No 495
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.61 E-value=9.4e-05 Score=72.93 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=27.0
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~ 63 (1054)
+.+..+.|.|| +.+|+|||||||||++.+|.
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 99999999999999999996
No 496
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.0001 Score=75.18 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=33.9
Q ss_pred CCCceEeEEEEE--ecccccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 001556 17 SGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 17 ~~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~ 65 (1054)
.+++.+..|.+. +...+.+.++.|.+| +.+|+|||||||||++.+|.-.
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 334555555443 111245667788776 9999999999999999988543
No 497
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.60 E-value=0.0001 Score=73.52 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=27.2
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~~ 65 (1054)
+.+.++.|.+| +.+|+|||||||||++.+|.-.
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 45566777765 9999999999999999999643
No 498
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=5.8e-05 Score=70.17 Aligned_cols=77 Identities=23% Similarity=0.180 Sum_probs=60.3
Q ss_pred cccCCCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCCCCCCC
Q 001556 963 NVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGE 1042 (1054)
Q Consensus 963 ~~~~~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~ 1042 (1054)
.+...+.||||++++++||=.|+ ....++.-|||.+.|||.+.+.+++.|.++....+.-+|+--|+-.....+.+
T Consensus 141 A~qra~~LSGGQQQRVaIARaL~----Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~ 216 (258)
T COG3638 141 AYQRASTLSGGQQQRVAIARALV----QQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYAD 216 (258)
T ss_pred HHHHhccCCcchhHHHHHHHHHh----cCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHh
Confidence 44456789999999999985543 34446669999999999999999999999987778888887777654445554
Q ss_pred C
Q 001556 1043 R 1043 (1054)
Q Consensus 1043 ~ 1043 (1054)
+
T Consensus 217 R 217 (258)
T COG3638 217 R 217 (258)
T ss_pred h
Confidence 3
No 499
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=8e-05 Score=87.53 Aligned_cols=69 Identities=23% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhcCCCceeechhhhhcchhhHHHHHHHHHHHHhcCCcEEEEeccCCCCC
Q 001556 967 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGL 1037 (1054)
Q Consensus 967 ~~~lSgGErs~~~lal~~al~~~~~~p~~v~DE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~ 1037 (1054)
+..|||||++++.||..|+.. ..+.+++|||||++|||+.....+.+.|.++. ..+.-||++||+....
T Consensus 826 ~~tLSgGe~QRl~LA~aL~~~-~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~-~~G~TVIvi~H~~~~i 894 (924)
T TIGR00630 826 ATTLSGGEAQRIKLAKELSKR-STGRTLYILDEPTTGLHFDDIKKLLEVLQRLV-DQGNTVVVIEHNLDVI 894 (924)
T ss_pred cccCCHHHHHHHHHHHHHhhc-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHH
Confidence 456899999999999877631 23568999999999999999999888888875 5688999999998543
No 500
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.59 E-value=8.8e-05 Score=74.51 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=26.4
Q ss_pred ccceEEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 001556 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1054)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKStil~ai~~ 64 (1054)
+.+.++.|.+| +.+|+|||||||||++..|.-
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35566777775 899999999999999998863
Done!