Query 001556
Match_columns 1054
No_of_seqs 436 out of 2764
Neff 11.5
Searched_HMMs 29240
Date Tue Mar 26 16:48:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001556.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_854-858//hhsearch_pdb/001556hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qks_A DNA double-strand break 1.0 1 1 181.2 14.0 150 20-187 1-160 (203)
2 3auy_A DNA double-strand break 1.0 1 1 177.2 24.5 149 18-186 1-154 (371)
3 1w1w_A Structural maintenance 1.0 1 1 167.8 15.9 152 19-176 1-164 (430)
4 4ad8_A DNA repair protein RECN 1.0 1 1 165.0 27.3 109 19-149 37-147 (517)
5 3kta_A Chromosome segregation 1.0 1 1 163.4 16.1 159 19-189 1-168 (182)
6 1f2t_A RAD50 ABC-ATPase; DNA d 1.0 1 1 162.9 11.2 140 20-172 1-149 (149)
7 1e69_A Chromosome segregation 1.0 1 1 156.6 13.6 140 20-175 1-148 (322)
8 3qkt_A DNA double-strand break 1.0 1 1 151.7 12.6 142 20-173 1-150 (339)
9 3qf7_A RAD50; ABC-ATPase, ATPa 1.0 1 1 140.0 21.7 146 20-176 1-155 (365)
10 3kta_B Chromosome segregation 1.0 1 1 135.9 8.9 135 907-1050 4-142 (173)
No 1
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=1.00 E-value=1 Score=181.17 Aligned_cols=150 Identities=21% Similarity=0.367 Sum_probs=113.8
Q ss_pred CEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 14759999821343340788279658998499995679999999873487677665555147654198268999999836
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 99 (1054)
|+|.+|.|.||++|.+.+|+|+||+|+|+||||+|||||++||.|+||+.+. .|+....++++.|...+.|+++|.++
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~~--~r~~~~~~~i~~~~~~~~v~l~f~~~ 78 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (203)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHTTSC--CTTCCHHHHHTSCSSCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHHHHCCCCCCEEEEEEEEEC
T ss_conf 9799999988767156299818981899928999889999999999649855--65666123330689848999999989
Q ss_pred CCCCCCCCCCCCCEEEEEEEE-CC---CCE--EEEECCCCC---CCCCCHHHHHHHHHHC-CCCCCCCCEEECHHHHHHH
Q ss_conf 866656444698168998750-89---781--798758997---0235378999998743-8888898133041114563
Q 001556 100 GEDAFKPEIFGDSIIIERRIT-ES---TST--TVLKDHQGK---RVASRKQELLELIDHF-NIDVENPCVIMSQDKSREF 169 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~---~~~--~~~~~~~g~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~ 169 (1054)
|..|+|.|.+. ++ .+. +++. +|. ....+..++.+.+..+ +.+.+..+++++|+.+.+|
T Consensus 79 ----------~~~~~i~R~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~v~~~i~~ll~~~~f~~~~~l~Qg~~~~~ 146 (203)
T 3qks_A 79 ----------GTKYRITRRFLKGYSSGEIHAMKRLV--GNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAI 146 (203)
T ss_dssp ----------TEEEEEEEEEECSSSCEEEEEEEEEE--TTEEEESSCSSHHHHHHHHHHHSCHHHHHHTTEECTTHHHHH
T ss_pred ----------CEEEEEEEEEECCCCCCCCCEEEEEC--CCCEEEECCCCHHHHHHHHHHHCCHHHHHEEEEECCCCHHHH
T ss_conf ----------99999999997689877653599972--896655034776899999999739878127889958757878
Q ss_pred HCCCCHHHHHHHHHHHHH
Q ss_conf 107990436888889999
Q 001556 170 LHSGNDKDKFKATLLQQV 187 (1054)
Q Consensus 170 l~~~~~~~~~~~~~~~~~ 187 (1054)
+.+. .. +..+++.+
T Consensus 147 l~~~-~e---r~~~l~~i 160 (203)
T 3qks_A 147 LESD-EA---REKVVREV 160 (203)
T ss_dssp HHCH-HH---HHHHHHHH
T ss_pred HHCC-HH---HHHHHHHH
T ss_conf 7493-99---99999999
No 2
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=1.00 E-value=1 Score=177.21 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=111.1
Q ss_pred CCCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEE
Q ss_conf 88147599998213433407882796589984999956799999998734876776655551476541982689999998
Q 001556 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (1054)
Q Consensus 18 ~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~ 97 (1054)
|||+|.+|.|.||++|...+|+|+||+|+|+|+||||||||+|||+|+|+|.. |+....++|+.|...+.|+++|.
T Consensus 1 m~M~l~~L~l~nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~~----r~~~~~~~ir~g~~~~~V~~~f~ 76 (371)
T 3auy_A 1 MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAG----SNFNYDTIITKGKKSVYVELDFE 76 (371)
T ss_dssp CCEEEEEEEEEEETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHHHHHCCC-----CCCTTTTBCTTCSEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHCCCCCCCEEEEEEEE
T ss_conf 98478699998611536659836998499999999988999999999982998----75556765118998389999999
Q ss_pred ECCCCCCCCCCCCCCEEEEEEEECCCC--EEEEECCCCCCCCCCHHHHHHHHHH-CCCCCC--CCCEEECHHHHHHHHCC
Q ss_conf 368666564446981689987508978--1798758997023537899999874-388888--98133041114563107
Q 001556 98 NRGEDAFKPEIFGDSIIIERRITESTS--TTVLKDHQGKRVASRKQELLELIDH-FNIDVE--NPCVIMSQDKSREFLHS 172 (1054)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~q~~~~~~l~~ 172 (1054)
.+ +..|.|.|.+..+.+ .+++ +|.+++....++...+.. +|++.+ .++.+++|+.+..|+..
T Consensus 77 ~~----------~~~~~i~r~~~~g~~~~~~~~---ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~ 143 (371)
T 3auy_A 77 VN----------GNNYKIIREYDSGRGGAKLYK---NGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSL 143 (371)
T ss_dssp ET----------TEEEEEEEEEETTEEEEEEEE---TTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHS
T ss_pred EC----------CEEEEEEEEECCCCCCEEEEE---CCEEECCCHHHHHHHHHHHHCCCHHHHCCEEEECCCCHHHHHHC
T ss_conf 89----------999999999768998539998---99861164789999999986959899474326617307998735
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99043688888999
Q 001556 173 GNDKDKFKATLLQQ 186 (1054)
Q Consensus 173 ~~~~~~~~~~~~~~ 186 (1054)
++.. +..+++.
T Consensus 144 ~~~~---Rr~~ld~ 154 (371)
T 3auy_A 144 KPSE---KLETVAK 154 (371)
T ss_dssp CHHH---HHHHHHH
T ss_pred CHHH---HHHHHHH
T ss_conf 9899---9999999
No 3
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=167.76 Aligned_cols=152 Identities=22% Similarity=0.343 Sum_probs=112.6
Q ss_pred CCEEEEEEEEECCCCCCE-EEEEC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEE
Q ss_conf 814759999821343340-78827-9658998499995679999999873487677665555147654198268999999
Q 001556 19 AGTITRVRLENFMCHSSL-QIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (1054)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~-~i~f~-~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~~~~ 96 (1054)
||+|++|.+.||++|++. .++|. +++|+|+||||+|||||++||.|++++.+. ..|+....++|+.|...+.|.++|
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~-~~R~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN-HLRSNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred CCEEEEEEEECEEEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9715899995889989940577569978999999988899999999845342434-401445899996488664025872
Q ss_pred EECCCC------CCCC---CCCCCCEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECHHHH
Q ss_conf 836866------6564---44698168998750-8978179875899702353789999987438888898133041114
Q 001556 97 KNRGED------AFKP---EIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKS 166 (1054)
Q Consensus 97 ~~~~~~------~~~~---~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 166 (1054)
.+.+.. .++. ...+..+.|.|.+. ++.+.|.+ ||.++. ..++..++...++......+++.|+.+
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~i~r~~~~~~~~~~~i---ng~~~~--~~~~~~~~~~~~i~~~~~~~~i~qg~~ 154 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKI---DGKTVS--YKDYSIFLENENILIKAKNFLVFQGDV 154 (430)
T ss_dssp ---------CCEEEEEEEEEETTEEEEEEEEEETTSCEEEEE---TTEEEC--HHHHHHHHHHTTCCTTTCTTEECTTCT
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCEEEEE---CCEECC--HHHHHHHHHHCCCCCCCCCEEEEHHHH
T ss_conf 266665677631111034216882799999996699569999---998864--999999998579587872004665759
Q ss_pred HHHHCCCCHH
Q ss_conf 5631079904
Q 001556 167 REFLHSGNDK 176 (1054)
Q Consensus 167 ~~~l~~~~~~ 176 (1054)
..|+..+|..
T Consensus 155 ~~l~~~~p~e 164 (430)
T 1w1w_A 155 EQIAAQSPVE 164 (430)
T ss_dssp THHHHSCHHH
T ss_pred HHHHHCCHHH
T ss_conf 9998589999
No 4
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=164.96 Aligned_cols=109 Identities=28% Similarity=0.417 Sum_probs=92.6
Q ss_pred CCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEE-E
Q ss_conf 814759999821343340788279658998499995679999999873487677665555147654198268999999-8
Q 001556 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL-K 97 (1054)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~~~~-~ 97 (1054)
.|+|.+|.|.||++|...+++|+||+|+|+|+||||||||++||.|++|+++. .++|+.|...+.|++.| .
T Consensus 37 ~M~l~~L~i~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~--------~~~i~~g~~~a~v~~~f~~ 108 (517)
T 4ad8_A 37 GPRLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN--------HDLIRSGEKELLVTGFWGD 108 (517)
T ss_dssp -CCCCEEEEESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC--------GGGBCTTCSEEEEEEEC--
T ss_pred CCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCH--------HHHHCCCCCCEEEEEEEEE
T ss_conf 66642360016166301799538980799859998789999999987367768--------9982189973899999985
Q ss_pred ECCCCCCCCCCCCCCEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 36866656444698168998750-89781798758997023537899999874
Q 001556 98 NRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDH 149 (1054)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 149 (1054)
.++ +..+.|.|.+. ++.+.+++ +|.+++. ..+.++...
T Consensus 109 ~~~---------~~~~~i~r~~~~~g~~~~~i---ng~~v~~--~~l~~~~~~ 147 (517)
T 4ad8_A 109 GDE---------SEADSASRRLSSAGRGAARL---SGEVVSV--RELQEWAQG 147 (517)
T ss_dssp ---------------CEEEEEEETTSCCEEES---SSSBCCH--HHHHHHHTT
T ss_pred CCC---------CCEEEEEEEEECCCCCEEEE---CCEECCH--HHHHHHHHH
T ss_conf 489---------97699999996388838999---9998879--999999631
No 5
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=1.00 E-value=1 Score=163.36 Aligned_cols=159 Identities=26% Similarity=0.417 Sum_probs=126.1
Q ss_pred CCEEEEEEEEECCCC--CCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC------CEE
Q ss_conf 814759999821343--340788279658998499995679999999873487677665555147654198------268
Q 001556 19 AGTITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYA 90 (1054)
Q Consensus 19 ~m~i~~i~l~nf~~~--~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~------~~~ 90 (1054)
||+|.+|.|.||++| .+.+++|++|+|+|+|+||||||||++||.|+|++......++....++++.|. ..+
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred CCEEEEEEEECEEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCCEE
T ss_conf 95689999958486537628996589828999999997899999999997687422345432000366466667777359
Q ss_pred EEEEEEEECCCCCCCCCCCCCCEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECHHHHHHH
Q ss_conf 999999836866656444698168998750-8978179875899702353789999987438888898133041114563
Q 001556 91 MVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (1054)
Q Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (1054)
.|.++|.+.+.. +. ..+..++|.|.+. .+...|.+ +|..++ ...+.+++..++++.+.+ .+++|+.+..|
T Consensus 81 ~v~~~f~~~~~~-~~--~~~~~~~i~r~~~~~~~~~~~i---~g~~~~--~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l 151 (182)
T 3kta_A 81 EVAIYFNNEDRG-FP--IDEDEVVIRRRVYPDGRSSYWL---NGRRAT--RSEILDILTAAMISPDGY-NIVLQGDITKF 151 (182)
T ss_dssp EEEEEEECTTCC-SS--SSSSEEEEEEEECTTSCEEEEE---TTEEEC--HHHHHHHHHHTTCCTTCT-TEECTTCTTHH
T ss_pred EEEEEEECCCCC-CC--CCCCEEEEEEEEEECCCEEEEE---CCEECC--HHHHHHHHHHCCCCCCCC-EEEECCCHHHH
T ss_conf 999999578765-45--6786899999999589579999---995868--999999999859997887-79975218899
Q ss_pred HCCCCHHHHHHHHHHHHHHH
Q ss_conf 10799043688888999999
Q 001556 170 LHSGNDKDKFKATLLQQVND 189 (1054)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~ 189 (1054)
+..++.. +..+++.+.+
T Consensus 152 ~~~~~~~---r~~~ld~~~g 168 (182)
T 3kta_A 152 IKMSPLE---RRLLIDDISG 168 (182)
T ss_dssp HHSCHHH---HHHHHHHHHT
T ss_pred HHCCHHH---HHHHHHHHHC
T ss_conf 8279999---9999999878
No 6
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=1.00 E-value=1 Score=162.91 Aligned_cols=140 Identities=24% Similarity=0.385 Sum_probs=106.3
Q ss_pred CEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 14759999821343340788279658998499995679999999873487677665555147654198268999999836
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 99 (1054)
|+|.+|+|.||++|.+.+++|++|+|+|+||||+|||||++||.|+|++... .|+....++++.|...+.|+++|..+
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~--~r~~~~~~~~~~~~~~~~v~~~f~~~ 78 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (149)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSC--CTTSSCCCSCSTTCCCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHEECCCCCEEEEEEEEEC
T ss_conf 9787999968534866599728976999988999889999999999759854--45588788500699748999999989
Q ss_pred CCCCCCCCCCCCCEEEEEEEEC-C-CCEEEE-EC--CCC-CCCCCCH-HHHHHHHHHCCCCCCCC--CEEECHHHHHHHH
Q ss_conf 8666564446981689987508-9-781798-75--899-7023537-89999987438888898--1330411145631
Q 001556 100 GEDAFKPEIFGDSIIIERRITE-S-TSTTVL-KD--HQG-KRVASRK-QELLELIDHFNIDVENP--CVIMSQDKSREFL 170 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~-~-~~~~~~-~~--~~g-~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l 170 (1054)
|..|.|.|.+.. + .+.++. .+ ..+ ..+..+. .++.+.+..+ ++.+.+ .++++|+.+..|+
T Consensus 79 ----------~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~QG~~~~~l 147 (149)
T 1f2t_A 79 ----------GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAIL 147 (149)
T ss_dssp ----------TEEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECTTHHHHHT
T ss_pred ----------CEEEEEEEEECCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHH-CCHHHHHHEEEECCCCHHHHH
T ss_conf ----------999999999867888438999752689733783447668999999997-699885316898075798795
Q ss_pred CC
Q ss_conf 07
Q 001556 171 HS 172 (1054)
Q Consensus 171 ~~ 172 (1054)
.+
T Consensus 148 ~~ 149 (149)
T 1f2t_A 148 ES 149 (149)
T ss_dssp CC
T ss_pred HC
T ss_conf 39
No 7
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=156.57 Aligned_cols=140 Identities=26% Similarity=0.397 Sum_probs=113.6
Q ss_pred CEEEEEEEEECCCC-CCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC------CEEEE
Q ss_conf 14759999821343-340788279658998499995679999999873487677665555147654198------26899
Q 001556 20 GTITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYAMV 92 (1054)
Q Consensus 20 m~i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~------~~~~v 92 (1054)
|+|++|+|.||++| +..+++|.||+|+|+|+||||||||++||.|++|..+....|+....++++.|. ..+.|
T Consensus 1 M~l~~L~i~nfr~~~~~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v 80 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYV 80 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEE
T ss_pred CEEEEEEEECCEEECCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCCEEEE
T ss_conf 95759999493521697688569992899999999679999999998688840000202588760267667888861899
Q ss_pred EEEEEECCCCCCCCCCCCCCEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHC
Q ss_conf 9999836866656444698168998750-897817987589970235378999998743888889813304111456310
Q 001556 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1054)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1054)
++.|.+.+ ..+.|.|.+. ++.+.|++ +|..+ +..++..++...++... .+.++.|+.+..++.
T Consensus 81 ~~~f~~~~----------~~~~i~r~~~~~~~~~~~i---ng~~~--~~~~~~~~~~~~g~~~~-~~~lv~qg~i~~~~~ 144 (322)
T 1e69_A 81 ELVFEENG----------EEITVARELKRTGENTYYL---NGSPV--RLKDIRDRFAGTGLGVD-FYSIVGQGQIDRIVN 144 (322)
T ss_dssp EEEEESSS----------CEEEEEEEEETTSCEEEEE---TTEEE--CHHHHHHHTTTSSTTTT-CCSEEEHHHHHHHHT
T ss_pred EEEEEECC----------EEEEEEEEEECCCCEEEEE---CCCCC--CHHHHHHHHHHCCCCHH-HEEEEEHHHHHHHHH
T ss_conf 99999399----------2999999998699638999---99083--49999999998399804-606674564999986
Q ss_pred CCCH
Q ss_conf 7990
Q 001556 172 SGND 175 (1054)
Q Consensus 172 ~~~~ 175 (1054)
.++.
T Consensus 145 ~~p~ 148 (322)
T 1e69_A 145 ASPE 148 (322)
T ss_dssp C---
T ss_pred CCHH
T ss_conf 6688
No 8
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=1.00 E-value=1 Score=151.75 Aligned_cols=142 Identities=21% Similarity=0.348 Sum_probs=101.6
Q ss_pred CEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 14759999821343340788279658998499995679999999873487677665555147654198268999999836
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 99 (1054)
|+|++|+|.||++|.+.+++|+||+|+|+||||||||||+|||+|+|++... .++....++++.|...++|.+.|..+
T Consensus 1 M~i~~l~l~nF~~~~~~~i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (339)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCC--CTTCCHHHHBCTTCSEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHHCCCCCEEEEEEEEEEC
T ss_conf 9679999976217557177279983899999999789999999999648756--67677778861789808999999989
Q ss_pred CCCCCCCCCCCCCEEEEEEEECC----CCEEEEECCCCCCCC---CCHHHHHHHHHHC-CCCCCCCCEEECHHHHHHHHC
Q ss_conf 86665644469816899875089----781798758997023---5378999998743-888889813304111456310
Q 001556 100 GEDAFKPEIFGDSIIIERRITES----TSTTVLKDHQGKRVA---SRKQELLELIDHF-NIDVENPCVIMSQDKSREFLH 171 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~----~~~~~~~~~~g~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~ 171 (1054)
+..|.|.|.+..+ ...+.....++.... .....+..++..+ +.+.+...++++|+.+..|+.
T Consensus 79 ----------~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~~~~~i~Qg~~~~il~ 148 (339)
T 3qkt_A 79 ----------GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE 148 (339)
T ss_dssp ----------TEEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHHTEECTTCTTGGGS
T ss_pred ----------CEEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHEEECCHHHHHHHH
T ss_conf ----------9999999998547778864378994288255423331678999999863978765425861212999872
Q ss_pred CC
Q ss_conf 79
Q 001556 172 SG 173 (1054)
Q Consensus 172 ~~ 173 (1054)
..
T Consensus 149 ~~ 150 (339)
T 3qkt_A 149 SD 150 (339)
T ss_dssp CT
T ss_pred CH
T ss_conf 86
No 9
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=1.00 E-value=1 Score=140.00 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=100.7
Q ss_pred CEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 14759999821343340788279658998499995679999999873487677665555147654198268999999836
Q 001556 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1054)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 99 (1054)
|+|.+|.+.||++|.+.+++|.+|+++|+||||||||||++||+|+|+|....... ..-...++.+...+.|.++|..+
T Consensus 1 M~~~~l~~~~f~~~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~~-~~~~~~~~~~~~~~~v~~~f~~~ 79 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPN-SYDYVNRNAVDGTARLVFQFERG 79 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCSS-GGGGBCTTCTTCEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-CCHHHHCCCCCCCEEEEEEEEEC
T ss_conf 95489999676686661783489869999999997899999999996688655567-50455414788738999999989
Q ss_pred CCCCCCCCCCCCCEEEEEEEEC--CCCEEEE--ECCCCCCC--CCCHHHHHH-HHHHCCCCCC--CCCEEECHHHHHHHH
Q ss_conf 8666564446981689987508--9781798--75899702--353789999-9874388888--981330411145631
Q 001556 100 GEDAFKPEIFGDSIIIERRITE--STSTTVL--KDHQGKRV--ASRKQELLE-LIDHFNIDVE--NPCVIMSQDKSREFL 170 (1054)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~--~~~~~~~--~~~~g~~~--~~~~~~~~~-~~~~~~~~~~--~~~~~~~q~~~~~~l 170 (1054)
|..|.|.|.+.. +.....+ ...+|..+ ......+.. +...+|++.. ..+.+++|+.+..|+
T Consensus 80 ----------g~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~~l 149 (365)
T 3qf7_A 80 ----------GKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLL 149 (365)
T ss_dssp ----------TEEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTTTT
T ss_pred ----------CEEEEEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCHHHHH
T ss_conf ----------9899999998526788760799983799366513676889999999979999994568997332249898
Q ss_pred CCCCHH
Q ss_conf 079904
Q 001556 171 HSGNDK 176 (1054)
Q Consensus 171 ~~~~~~ 176 (1054)
.+.+..
T Consensus 150 ~~~~~~ 155 (365)
T 3qf7_A 150 ISPPSE 155 (365)
T ss_dssp TSCHHH
T ss_pred HCCHHH
T ss_conf 539266
No 10
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=1.00 E-value=1 Score=135.86 Aligned_cols=135 Identities=27% Similarity=0.414 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC----CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999999998999999999999985630397014872126----6427999844898888755678778887026999999
Q 001556 907 SRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYE----EKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCF 982 (1054)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~g~~~~~~~----~~~~~i~v~~~~~~~~~~~~~~~~lSgGErs~~~lal 982 (1054)
++...|...+..+...|+..|..+++ |+.+.+.+..+ .+++.+.+.+ ++.....+..||||||++++||+
T Consensus 4 ~~~~~f~~~f~~i~~~f~~~f~~L~~--~g~~~l~l~~~~~~~~~gl~i~~~~----~~~~~~~~~~LSgGekqr~ala~ 77 (173)
T 3kta_B 4 EKKNVFMRTFEAISRNFSEIFAKLSP--GGSARLILENPEDPFSGGLEIEAKP----AGKDVKRIEAMSGGEKALTALAF 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHST--TCEEEEEESCSSSGGGSCEEEEEET----TSSSCCCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCCCEEEECC----CCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999999998589--9879999607987433685699638----98441633009999999999999
Q ss_pred HHHHHHHCCCCCEEECHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECC
Q ss_conf 99951113898014003221003245897999999998528957999646888787889980288568
Q 001556 983 ALALHEMTEAPFRAMDEFDVFMDAISRKISLDTLVDFALAQGSQWIFITPHDVGLVKQGERIKKQQMA 1050 (1054)
Q Consensus 983 ~~al~~~~~~p~~vlDE~~~~lD~~~~~~~~~~l~~~~~~~~~Q~i~iT~~~~~~~~~~~~~~v~~~~ 1050 (1054)
+||+..+.++||++||||+++||+.++..+...|.++. .+.|+|+|||+...+ ...+.+-...|.
T Consensus 78 ~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~--~~~~~ivith~~~~~-~~ad~i~~v~~~ 142 (173)
T 3kta_B 78 VFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS--KESQFIVITLRDVMM-ANADKIIGVSMR 142 (173)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEEEEE
T ss_pred HHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEECHHHH-HHCCEEEEEEEC
T ss_conf 99854557998999779865789999999999999866--699899999368999-869999999955
Done!