BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001557
         (1054 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
           Halothermothrix Orenii
 pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
           Of Halothermothrix Orenii
 pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
           Of Halothermothrix Orenii
          Length = 499

 Score =  181 bits (460), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 153/495 (30%), Positives = 229/495 (46%), Gaps = 74/495 (14%)

Query: 189 DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTENLMQGL 248
           D GGQ+ YV E++ AL  M GV +VD++TR++     D  + E S  ++     N ++  
Sbjct: 31  DFGGQLVYVKEVSLALAEM-GV-QVDIITRRIK----DENWPEFSGEIDYYQETNKVR-- 82

Query: 249 GESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPV 308
                  I+RIPFG  DK++ KE LWP++ E+V+     II   +  G+        +P 
Sbjct: 83  -------IVRIPFG-GDKFLPKEELWPYLHEYVN----KIINFYREEGK--------FPQ 122

Query: 309 AIHGHYXXXXXXXXXXXXXXNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRI 368
            +  HY               +P  FTGHSLG  K+E+L      +  E++  +K  RRI
Sbjct: 123 VVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKL-NVNTSNFKEMDERFKFHRRI 181

Query: 369 EAEELSLDASEIVITSTRQEIEEQWR--LYDGFDPVLERKLRARIKRGVSCHGRFMPRMV 426
            AE L++  ++ +I ST QE   Q+   LY G   V +                   +  
Sbjct: 182 IAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDD-----------------KFS 224

Query: 427 VIPPGIEFHHIVRHNGD-----VDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILAL 481
           VIPPG+         GD     +   +ERD GS          E M        P I+A 
Sbjct: 225 VIPPGVNTRVFDGEYGDKIKAKITKYLERDLGS----------ERMEL------PAIIAS 268

Query: 482 ARPDPKKNITTLVKAFGECRPLRELANLTL----IMGNRDDIDEMSGTNAALLLSILKLI 537
           +R D KKN   LV+A+ + + L++ ANL L    I    +D          +L  I++LI
Sbjct: 269 SRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELI 328

Query: 538 DKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVAT 597
           D  D  G+V+    + Q ++   Y   A    VF   +F EPFGL  +EA A GLP V T
Sbjct: 329 DNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVT 388

Query: 598 KNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNIHQ-FSWPEH 656
           +NGGP +I      G+LVDP D + IA  LLK    ++ W   ++ G + + + ++W E 
Sbjct: 389 RNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQET 448

Query: 657 CKSYLSRISSCKQRQ 671
            + YL  I     R+
Sbjct: 449 ARGYLEVIQEIADRK 463


>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 136/527 (25%), Positives = 235/527 (44%), Gaps = 75/527 (14%)

Query: 168 IVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALG-------SMPGVY---RVDLLT 217
           +V++S HG    +N+ LG   DTGGQV Y+++  RAL           G+    R+ +LT
Sbjct: 281 VVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILT 338

Query: 218 RQVSAPDVDWTYAEPSEMLNRKNTENLMQGLGESSGAYIIRIPF----GPKDKYVQKELL 273
           R +  PD   T     E L R         + +S    I+R+PF    G   K++ +  +
Sbjct: 339 RLL--PDAVGTTC--GERLER---------VYDSEYCDILRVPFRTEKGIVRKWISRFEV 385

Query: 274 WPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYXXXXXXXXXXXXXXNVPMV 333
           WP++  + + A    +++SK L  +        P  I G+Y               V   
Sbjct: 386 WPYLETYTEDA---AVELSKELNGK--------PDLIIGNYSDGNLVASLLAHKLGVTQC 434

Query: 334 FTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEE-- 391
              H+L + K         +   +++  Y    +  A+  +++ ++ +ITST QEI    
Sbjct: 435 TIAHALEKTKY----PDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSK 490

Query: 392 ----QWRLYDGFD-PVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDG 446
               Q+  +  F  P L      R+  G+     F P+  ++ PG +      +      
Sbjct: 491 ETVGQYESHTAFTLPGL-----YRVVHGIDV---FDPKFNIVSPGADMSIYFPYTE---- 538

Query: 447 EVERDEGSPASPDPPIWSEI-----MHFFSNPRKPMILALARPDPKKNITTLVKAFGECR 501
           E  R     +  +  ++S++     +    + +KP++  +AR D  KN++ LV+ +G+  
Sbjct: 539 EKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNT 598

Query: 502 PLRELANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAY-PKHHKQSDVPDI 560
            LRELANL ++ G+R   +       A +  +  LI++Y L GQ  +      +    ++
Sbjct: 599 RLRELANLVVVGGDRRK-ESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGEL 657

Query: 561 YRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPH-- 618
           YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  +DP+  
Sbjct: 658 YRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHG 717

Query: 619 DQ--QSIADALLKLVSDKQLWERCRQNGLKNIHQ-FSWPEHCKSYLS 662
           DQ   ++AD   K   D   W+   + GL+ I + ++W  + +  L+
Sbjct: 718 DQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764


>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 135/523 (25%), Positives = 225/523 (43%), Gaps = 67/523 (12%)

Query: 168 IVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALG-------SMPGVY---RVDLLT 217
           +V++S HG    +N+ LG   DTGGQV Y+++  RAL           G+    R+ +LT
Sbjct: 281 VVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEXLQRIKQQGLNIKPRILILT 338

Query: 218 RQVSAPDVDWTYAEPSEMLNRKNTENLMQGLGESSGAYIIRIPF----GPKDKYVQKELL 273
           R +  PD   T     E L R         + +S    I+R+PF    G   K++ +  +
Sbjct: 339 RLL--PDAVGTTC--GERLER---------VYDSEYCDILRVPFRTEKGIVRKWISRFEV 385

Query: 274 WPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYXXXXXXXXXXXXXXNVPMV 333
           WP++  + + A    +++SK L  +        P  I G+Y               V   
Sbjct: 386 WPYLETYTEDA---AVELSKELNGK--------PDLIIGNYSDGNLVASLLAHKLGVTQC 434

Query: 334 FTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQW 393
              H+L + K         +   +++  Y    +  A+  + + ++ +ITST QEI    
Sbjct: 435 TIAHALEKTKY----PDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTFQEIAGSK 490

Query: 394 RLYDGFDPVLERKLRA--RIKRGVSCHGRFMPRMVVIPPGIE------FHHIVRHNGDVD 445
                ++      L    R+  G+     F P+  ++ PG +      +    R      
Sbjct: 491 ETVGQYESHTAFTLPGLYRVVHGIDV---FDPKFNIVSPGADXSIYFPYTEEKRRLTKFH 547

Query: 446 GEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPLRE 505
            E+E    S          E +    + +KP++   AR D  KN++ LV+ +G+   LRE
Sbjct: 548 SEIEELLYSDVEN-----KEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYGKNTRLRE 602

Query: 506 LANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAY-PKHHKQSDVPDIYRLA 564
           LANL ++ G+R   +       A       LI++Y L GQ  +      +    ++YR  
Sbjct: 603 LANLVVVGGDRRK-ESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYRYI 661

Query: 565 AKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPH--DQ-- 620
             TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I     +G  +DP+  DQ  
Sbjct: 662 CDTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAA 721

Query: 621 QSIADALLKLVSDKQLWERCRQNGLKNIHQ-FSWPEHCKSYLS 662
            ++AD   K   D   W+   + GL+ I + ++W  + +  L+
Sbjct: 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764


>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P.
 pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P
          Length = 426

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 140/345 (40%), Gaps = 60/345 (17%)

Query: 310 IHGHYXXXXXXXXXXXXXXNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIE 369
           IH HY               +P++ T H+L   K           RD+ +T     RRI 
Sbjct: 106 IHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK--------NSYRDDSDTPESEARRIC 157

Query: 370 AEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRGVSCHGRFMPRMVVIP 429
            ++L +D ++++  +T++E+++    YD  DP                      R+ V+ 
Sbjct: 158 EQQL-VDNADVLAVNTQEEMQDLMHHYDA-DP---------------------DRISVVS 194

Query: 430 PGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKN 489
           PG +       N        R+ G P      + ++++ F           + R  P K 
Sbjct: 195 PGADVELYSPGNDRATERSRRELGIP------LHTKVVAF-----------VGRLQPFKG 237

Query: 490 ITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYP 549
              L+KA           NL +I+         SG NA    +   + ++  +  ++ + 
Sbjct: 238 PQVLIKAVAALFDRDPDRNLRVIICGGP-----SGPNATPD-TYRHMAEELGVEKRIRFL 291

Query: 550 KHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGG-PVDIHRV 608
                S++  +YR A     +   P+F E FGL  +EA A G P++A + GG P+ +   
Sbjct: 292 DPRPPSELVAVYRAA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEG 347

Query: 609 LDNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNIHQFSW 653
            + GLLVD H   + ADAL  L+ D +   R  ++ +++   FSW
Sbjct: 348 -ETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSW 391


>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure.
 pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure
          Length = 438

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 140/345 (40%), Gaps = 60/345 (17%)

Query: 310 IHGHYXXXXXXXXXXXXXXNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIE 369
           IH HY               +P++ T H+L   K           RD+ +T     RRI 
Sbjct: 126 IHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK--------NSYRDDSDTPESEARRIC 177

Query: 370 AEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRGVSCHGRFMPRMVVIP 429
            ++L +D ++++  +T++E+++    YD  DP                      R+ V+ 
Sbjct: 178 EQQL-VDNADVLAVNTQEEMQDLMHHYDA-DP---------------------DRISVVS 214

Query: 430 PGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKN 489
           PG +       N        R+ G P      + ++++ F           + R  P K 
Sbjct: 215 PGADVELYSPGNDRATERSRRELGIP------LHTKVVAF-----------VGRLQPFKG 257

Query: 490 ITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYP 549
              L+KA           NL +I+         SG NA    +   + ++  +  ++ + 
Sbjct: 258 PQVLIKAVAALFDRDPDRNLRVIICGGP-----SGPNATPD-TYRHMAEELGVEKRIRFL 311

Query: 550 KHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGG-PVDIHRV 608
                S++  +YR A     +   P+F E FGL  +EA A G P++A + GG P+ +   
Sbjct: 312 DPRPPSELVAVYRAA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEG 367

Query: 609 LDNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNIHQFSW 653
            + GLLVD H   + ADAL  L+ D +   R  ++ +++   FSW
Sbjct: 368 -ETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSW 411


>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
          Length = 439

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 572 INPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 631
           I P++ EPFGL  +EA   G   +A+  GG  DI    + G+LV   D   +A+A+LK +
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI-ITNETGILVKAGDPGELANAILKAL 393

Query: 632 S-DKQLWERCRQNGLKNIHQFSWPEHCKSYLSRISSCKQR 670
              +    + R+N  K    FSW +  + Y+   +    R
Sbjct: 394 ELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 433


>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
          Length = 440

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 572 INPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 631
           I P++ EPFGL  +EA   G   +A+  GG  DI    + G+LV   D   +A+A+LK +
Sbjct: 336 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI-ITNETGILVKAGDPGELANAILKAL 394

Query: 632 S-DKQLWERCRQNGLKNIHQFSWPEHCKSYLSRISSCKQR 670
              +    + R+N  K    FSW +  + Y+   +    R
Sbjct: 395 ELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 434


>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
 pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 428

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 572 INPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 631
           I P++ EPFGL  +EA   G   +A+  GG  DI    + G+LV   D   +A+A+LK +
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI-ITNETGILVKAGDPGELANAILKAL 393

Query: 632 S-DKQLWERCRQNGLKNIHQFSWPEHCKSYL 661
              +    + R+N  K    FSW +  + Y+
Sbjct: 394 ELSRSDLSKFRENCKKRAMSFSWEKSAERYV 424


>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
          Length = 414

 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 578 EPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLW 637
           E FGL L+EA A G+P + T+ GG  ++ +  D G L +  D   +AD  ++L+ D++L 
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELH 374

Query: 638 ----ERCRQN 643
               ER R++
Sbjct: 375 RNMGERARES 384


>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558
          Length = 394

 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 578 EPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLW 637
           E FGL L+EA A G+P + T+ GG  ++ +  D G L +  D   +AD  ++L+ D++L 
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELH 354

Query: 638 ----ERCRQN 643
               ER R++
Sbjct: 355 RNMGERARES 364


>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
 pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
          Length = 381

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 454 SPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIM 513
           +PA+P+    +     F++   P+I   +R  P+K   +L+KA  +    R  A L ++ 
Sbjct: 178 TPATPEDKSATRKKLGFTD-TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236

Query: 514 GNR-DDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFI 572
             R +       T+ +  +  L  ++  D+   +A           DI+ + A+T+G  +
Sbjct: 237 SGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLA---------AADIFAMPARTRGGGL 287

Query: 573 NPAFIEPFGLTLIEAAAYGLPIVA-TKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 631
           +   +E  G+  +EA A G+P++A T  G P  +      GL+V+  D   +++ L++L+
Sbjct: 288 D---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA--TGLVVEGSDVDKLSELLIELL 342

Query: 632 SD 633
            D
Sbjct: 343 DD 344


>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp (Orthorhombic Crystal Form)
 pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp-Man (Orthorhombic Crystal Form)
          Length = 394

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 454 SPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIM 513
           +PA+P+    +     F++   P+I   +R  P+K   +L+KA  +    R  A L ++ 
Sbjct: 178 TPATPEDKSATRKKLGFTD-TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236

Query: 514 GNR-DDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFI 572
             R +       T+ +  +  L  ++  D+   +A           DI+ + A+T+G  +
Sbjct: 237 SGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLA---------AADIFAMPARTRGGGL 287

Query: 573 NPAFIEPFGLTLIEAAAYGLPIVA-TKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 631
           +   +E  G+  +EA A G+P++A T  G P  +      GL+V+  D   +++ L++L+
Sbjct: 288 D---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA--TGLVVEGSDVDKLSELLIELL 342

Query: 632 SD 633
            D
Sbjct: 343 DD 344


>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 200

 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 572 INPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLV 631
           I P++ EPFGL  +EA   G   +A+  GG  DI    + G+LV   D   +A+A+LK +
Sbjct: 120 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKAL 178

Query: 632 S-DKQLWERCRQNGLKNIHQFS 652
              +    + R+N  K    FS
Sbjct: 179 ELSRSDLSKFRENCKKRAMSFS 200


>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
           Mannosyltransferase (Pima) From Mycobacterium Smegmatis
           In Complex With Gdp-Man
 pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
           Mannosyltransferase (Pima) From Mycobacterium Smegmatis
           In Complex With Gdp
          Length = 406

 Score = 41.2 bits (95), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 27/181 (14%)

Query: 478 ILALARPD-PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSILKL 536
           +L L R D P+K +  L+ A  +   +    ++ +++  R D DE+    A  L   L+ 
Sbjct: 211 VLFLGRYDEPRKGMAVLLAALPKL--VARFPDVEILIVGRGDEDELR-EQAGDLAGHLRF 267

Query: 537 IDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFI-EPFGLTLIEAAAYGLPIV 595
           + + D   + +                A ++  V+  P    E FG+ L+EA A G  +V
Sbjct: 268 LGQVDDATKAS----------------AMRSADVYCAPHLGGESFGIVLVEAMAAGTAVV 311

Query: 596 ATKNGGPVDIHRVL---DNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNIHQFS 652
           A+         RVL   D G LV   D   +A AL+ ++ D QL         + +H++ 
Sbjct: 312 ASDLDA---FRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYD 368

Query: 653 W 653
           W
Sbjct: 369 W 369


>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
           In Lipopolysaccharide Biosynthesis
          Length = 374

 Score = 34.3 bits (77), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 18/94 (19%)

Query: 570 VFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNG---LLVDPHDQQSIADA 626
           + ++PA+ E  G+ L+EA   GLP++ T   G    H + D     ++ +P  Q+ + + 
Sbjct: 273 LLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA--HYIADANCGTVIAEPFSQEQLNEV 330

Query: 627 LLKLVSDKQLWERCRQNGLKNIHQFSWPEHCKSY 660
           L K ++   L             + +W E+ + Y
Sbjct: 331 LRKALTQSPL-------------RMAWAENARHY 351


>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
           (Wbaz-1)from Archaeoglobus Fulgidus, Northeast
           Structural Genomics Target Gr29a
          Length = 177

 Score = 32.7 bits (73), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 554 QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGL 613
           + ++ D+Y   ++ KG+    A  E FGLT IEA A G P++A   GG  +       G 
Sbjct: 88  EEELIDLY---SRCKGLLCT-AKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGY 143

Query: 614 LVDPHDQQSIADALLKL 630
           LV+  D   I DA  K+
Sbjct: 144 LVNA-DVNEIIDAXKKV 159


>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
           In Lipopolysaccharide Biosynthesis
          Length = 374

 Score = 32.3 bits (72), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 573 NPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNG---LLVDPHDQQSIADALLK 629
           +PA+ E  G+ L+EA   GLP++ T   G    H + D     ++ +P  Q+ + + L K
Sbjct: 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYA--HYIADANCGTVIAEPFSQEQLNEVLRK 333

Query: 630 LVSDKQL 636
            ++   L
Sbjct: 334 ALTQSPL 340


>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
           Tumefaciens In Complex With Adp
 pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
           Tumefaciens In Complex With Adp
          Length = 485

 Score = 32.0 bits (71), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 571 FINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDI-----HRVLDN----GLLVDPHDQQ 621
            I P+  EP GLT + A  YG   V  + GG  D      H  L +    G+   P    
Sbjct: 369 IIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLD 428

Query: 622 SIADALLKLV---SDKQLWERCRQNGLKNIHQFSWPEHCKSYLSRIS 665
            +  A+ + V    D +LW + ++ G+K+    SW +    Y +  S
Sbjct: 429 GLKQAIRRTVRYYHDPKLWTQMQKLGMKS--DVSWEKSAGLYAALYS 473


>pdb|4IR8|A Chain A, 1.85 Angstrom Crystal Structure Of Putative
           Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
 pdb|4IR8|B Chain B, 1.85 Angstrom Crystal Structure Of Putative
           Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
          Length = 347

 Score = 31.6 bits (70), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 548 YPKHHKQSDVPDIYRLAAKTKGVFINPA 575
           Y   +    VPD+Y++  K +GVF NPA
Sbjct: 251 YTLRYTGGLVPDVYQIFVKQQGVFCNPA 278


>pdb|3M9W|A Chain A, Open Ligand-Free Crystal Structure Of Xylose Binding
           Protein From Escherichia Coli
 pdb|3M9X|A Chain A, Open Liganded Crystal Structure Of Xylose Binding Protein
           From Escherichia Coli
 pdb|3MA0|A Chain A, Closed Liganded Crystal Structure Of Xylose Binding
           Protein From Escherichia Coli
 pdb|3MA0|B Chain B, Closed Liganded Crystal Structure Of Xylose Binding
           Protein From Escherichia Coli
 pdb|3MA0|C Chain C, Closed Liganded Crystal Structure Of Xylose Binding
           Protein From Escherichia Coli
          Length = 313

 Score = 31.2 bits (69), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 704 KLSLEGDKNEGGSTLDNSLDTEENAVTGKNKLENAVLALSNRTIGGTQKA 753
           K+ + GD+   G   +N+L   ENA+T  N   +AV+A ++ T GG  +A
Sbjct: 157 KIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQA 206


>pdb|3MWF|A Chain A, Crystal Structure Of Staphylococcus Aureus Sira Complexed
           With Staphyloferrin B
          Length = 298

 Score = 30.4 bits (67), Expect = 4.8,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 465 EIMHFFSNPRKPMILA----LARPDPKKNITTLVKAF-GECRPLRELANLTLIMGNR--D 517
           +I+   S    P++ A    + + DP      LVK    E    +E  NL  +  N+  D
Sbjct: 205 DIIQLTSKESIPLMNADHIFVVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNNQVSD 264

Query: 518 DIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHK 553
           D+DE++   A    S LKLID  DLY ++   K  K
Sbjct: 265 DLDEITWNLAGGYKSSLKLID--DLYEKLNIEKQSK 298


>pdb|2NW0|A Chain A, Crystal Structure Of A Lysin
 pdb|2NW0|B Chain B, Crystal Structure Of A Lysin
          Length = 189

 Score = 30.4 bits (67), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 554 QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNG 612
           Q+ + ++YRL AK  G+++     E FG   I+     +P    K   P D+ +  + G
Sbjct: 103 QAFIDELYRLGAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAYPCDLWQYDEYG 161


>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain
 pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain In Complex With Adp
          Length = 536

 Score = 30.4 bits (67), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 570 VFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVD----------IHRVLDNGLLVDPHD 619
           V   P+  EP GL  ++   YG P      GG VD          + R+  +  +V+P D
Sbjct: 404 VLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSD 463

Query: 620 QQSIADALLKLV 631
            + +A  L + +
Sbjct: 464 VKKVAATLKRAI 475


>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
 pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
          Length = 416

 Score = 30.4 bits (67), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 29/209 (13%)

Query: 469 FFSNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAA 528
           F  +P KP+I  ++R DP K I  +++ + + +   ++  + L++      D+  G    
Sbjct: 225 FDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVK--EKIPGVQLLLVGVXAHDDPEGW-IY 281

Query: 529 LLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAA 588
              ++ K+ + YD+         H +           +   V +  +  E FGLT+ EA 
Sbjct: 282 FEKTLRKIGEDYDVKVLTNLIGVHARE-----VNAFQRASDVILQXSIREGFGLTVTEAX 336

Query: 589 AYGLPIVATKNGGPVDIHRVLD--NGLLVDPHDQQSIADALLKLVSDKQL--------WE 638
             G P++    GG     +++D   G LV   D     + +L L+   ++         E
Sbjct: 337 WKGKPVIGRAVGGIK--FQIVDGETGFLV--RDANEAVEVVLYLLKHPEVSKEXGAKAKE 392

Query: 639 RCRQNGLKNIHQFSWPEHCKSYLSRISSC 667
           R R+N       F   +H + YL  ++S 
Sbjct: 393 RVRKN-------FIITKHXERYLDILNSL 414


>pdb|3HMC|A Chain A, Endolysin From Bacillus Anthracis
          Length = 192

 Score = 30.0 bits (66), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 554 QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIV-ATKNGGPVDIHRVLDNG 612
           Q+ + ++YRL AK  G+++      PFG+  +++    +P     K   P DI +  + G
Sbjct: 107 QAFIDELYRLGAKKVGLYVGHHMYTPFGMANVKSDFVWIPRYGGNKPAYPCDIWQYTETG 166


>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
           Agrobacterium Tumefaciens (Non-Complexed Form)
 pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
           Agrobacterium Tumefaciens (Non-Complexed Form)
          Length = 485

 Score = 30.0 bits (66), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 571 FINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDI-----HRVLDN----GLLVDPHDQQ 621
            I P+  EP GLT + A  YG   V  + GG  D      H  L +    G+   P    
Sbjct: 369 IIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLD 428

Query: 622 SIADALLKLV---SDKQLWERCRQNGLKNIHQFSWPEHCKSYLSRIS 665
            +  A+ + V    D +LW + ++ G K+    SW +    Y +  S
Sbjct: 429 GLKQAIRRTVRYYHDPKLWTQXQKLGXKS--DVSWEKSAGLYAALYS 473


>pdb|3MWG|A Chain A, Crystal Structure Of Staphylococcus Aureus Sira
 pdb|3MWG|B Chain B, Crystal Structure Of Staphylococcus Aureus Sira
          Length = 279

 Score = 30.0 bits (66), Expect = 7.8,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 481 LARPDPKKNITTLVKAF-GECRPLRELANLTLIMGNR--DDIDEMSGTNAALLLSILKLI 537
           + + DP      LVK    E    +E  NL  +  N+  DD+DE++   A    S LKLI
Sbjct: 206 VVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNNQVSDDLDEITWNLAGGYKSSLKLI 265

Query: 538 DKYDLYGQVAYPKHHK 553
           D  DLY ++   K  K
Sbjct: 266 D--DLYEKLNIEKQSK 279


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,035,362
Number of Sequences: 62578
Number of extensions: 1378205
Number of successful extensions: 2970
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2931
Number of HSP's gapped (non-prelim): 33
length of query: 1054
length of database: 14,973,337
effective HSP length: 109
effective length of query: 945
effective length of database: 8,152,335
effective search space: 7703956575
effective search space used: 7703956575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)