Query 001557
Match_columns 1054
No_of_seqs 569 out of 4279
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:17:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001557.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_854-858//hhsearch_pdb/001557hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 1.0 1 1 482.4 37.4 477 153-668 267-770 (816)
2 2r60_A Glycosyl transferase, g 1.0 1 1 382.5 35.3 443 164-672 6-464 (499)
3 3fro_A GLGA glycogen synthase; 1.0 1 1 360.8 35.9 428 164-670 1-433 (439)
4 3vue_A GBSS-I, granule-bound s 1.0 1 1 359.6 34.6 454 160-669 4-513 (536)
5 3c48_A Predicted glycosyltrans 1.0 1 1 354.5 38.2 411 164-672 19-430 (438)
6 1rzu_A Glycogen synthase 1; gl 1.0 1 1 333.7 26.8 443 166-671 1-479 (485)
7 2qzs_A Glycogen synthase; glyc 1.0 1 1 333.5 26.4 445 166-670 1-479 (485)
8 3okp_A GDP-mannose-dependent a 1.0 1 1 317.4 34.3 371 164-671 3-383 (394)
9 2iw1_A Lipopolysaccharide core 1.0 1 1 314.6 27.5 368 166-668 1-372 (374)
10 2jjm_A Glycosyl transferase, g 1.0 1 1 312.5 36.4 361 188-671 24-389 (394)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=482.40 Aligned_cols=477 Identities=25% Similarity=0.427 Sum_probs=359.2
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH--------HHHHHHCCCCCEEE----EEEECCC
Q ss_conf 11344531037642999983044445677678998988707689999--------99998159994079----9982576
Q 001557 153 TMENWAIQYKEKKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVE--------LARALGSMPGVYRV----DLLTRQV 220 (1054)
Q Consensus 153 ~~~~~~~~~~~~~mkIllis~h~~~r~~~~elgr~~dtGG~~~~v~e--------La~aLa~~~Gv~~V----~vit~~~ 220 (1054)
.++..-... +|.|+|++||.||++++.++ +|+ ||||||+.||++ |+++|+++ | |+| +|+|+.+
T Consensus 267 ~~~~~~~~~-~~~~~i~~is~hg~~~~~~~-lG~-~dtGGq~vyV~e~~~al~~ela~~L~~~-G-~~V~~~V~v~Tr~~ 341 (816)
T 3s28_A 267 TLETFLGRV-PMVFNVVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEMLQRIKQQ-G-LNIKPRILILTRLL 341 (816)
T ss_dssp HHHHHHHHS-CCCCEEEEECCSSCCCSSSC-TTS-TTCSHHHHHHHHHHHHHHHHHHHHHHHT-T-CCCCCEEEEEEECC
T ss_pred CHHHHHCCC-CCEEEEEEECCCCCCCCCCC-CCC-CCCCCCEEEHHHHHHHHHHHHHHHHHHC-C-CCCCEEEEEEECCC
T ss_conf 077773658-85248999847766575445-788-8889836509989989999999999977-9-96200168996898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79998976687631134443100001368889919998148998----75533245799747899999999999999986
Q 001557 221 SAPDVDWTYAEPSEMLNRKNTENLMQGLGESSGAYIIRIPFGPK----DKYVQKELLWPHIPEFVDAALTHIIQISKVLG 296 (1054)
Q Consensus 221 ~~p~~~~~~~~~~e~l~~~~~~~~~~~~~~~~gv~i~ri~~~~~----~~~l~k~~l~~~l~~f~~~~l~~i~~~~~~L~ 296 (1054)
.++ ..+.|.++.+.+ ...+|++|+|+|+++. ..|+.++.+|+++..|...++..+...
T Consensus 342 ~~~-~g~~y~~~~e~i------------~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~----- 403 (816)
T 3s28_A 342 PDA-VGTTCGERLERV------------YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKE----- 403 (816)
T ss_dssp TTC-TTSSTTSSEEEC------------TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHH-----
T ss_pred CCC-CCCCCCCCCEEE------------CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf 787-777657751155------------48697599996687766543345657788999999999999999996-----
Q ss_pred HHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 43159999964299975897049999997259998999927983204899987177875646557679999999996430
Q 001557 297 EQVGSGQPIWPVAIHGHYADAGDAAALLSGALNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLD 376 (1054)
Q Consensus 297 ~~~~~~~~~~pDIIh~h~~~~g~~a~~l~~~~~iP~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~~~~~rri~~E~~~l~ 376 (1054)
...+|||||+|++.++.++.++++..++|+|+|.|+++..+.. .....+..+...|++.+++.+|+.+++
T Consensus 404 ------~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~----~~~~~~~~~~~~y~~~~r~~aE~~~l~ 473 (816)
T 3s28_A 404 ------LNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYP----DSDIYWKKLDDKYHFSCQFTADIFAMN 473 (816)
T ss_dssp ------CSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHST----TTTTTHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ------CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------5899739996885389999999997599889998166300122----233015567788889888889999998
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 279899569889999995406998478999999682264457888996899499986887445899988744336799--
Q 001557 377 ASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGS-- 454 (1054)
Q Consensus 377 ~Ad~Vi~~S~~~~~~~~~~y~~~~~~~~~~l~~r~~~gv~~~g~~~~kv~vIPnGID~~~f~p~~~~~~~~~~~~~~~-- 454 (1054)
.||.|||+|+++++.+...+..+....... -....+.++..+.+.+++.|||||||.+.|.|....... +......
T Consensus 474 ~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~-~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~R-l~~~~~~i~ 551 (816)
T 3s28_A 474 HTDFIITSTFQEIAGSKETVGQYESHTAFT-LPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRR-LTKFHSEIE 551 (816)
T ss_dssp HSSEEEESCHHHHHCCSSSCCTTGGGSSEE-ETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTC-CGGGHHHHH
T ss_pred HCCEEEECCHHHHHHHHHHHHHHHHHHCCC-CCHHHHCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHH-HHHCCCCCC
T ss_conf 499999888999999998887764420135-411221012244677887998897478872863103554-320023200
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHCHHHHHHHHH
Q ss_conf 99999831577742118999868999928998789999999998440236998399999339992022010299999999
Q 001557 455 PASPDPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSGTNAALLLSIL 534 (1054)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~IL~vgRld~~Kgi~~li~A~~~l~~~~~~~~l~LIiG~~~~~~~~~~~~~~~~~~i~ 534 (1054)
.....+....+...+...+++++|+++||+++.||++.+++|+..+....+..++ +|+|++++......+.......+.
T Consensus 552 ~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~L-vIvG~g~~~~~~~~e~~~~~~~L~ 630 (816)
T 3s28_A 552 ELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANL-VVVGGDRRKESKDNEEKAEMKKMY 630 (816)
T ss_dssp HHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEE-EEECCCTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE-EEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 0124605677774445789983999974472217999999999997855799699-999688753334335699999999
Q ss_pred HHHHHCCCCCCEEECCCCC----CCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCEEECC
Q ss_conf 9998819999788399999----894999999821399299963998998689999998498799906667422012077
Q 001557 535 KLIDKYDLYGQVAYPKHHK----QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLD 610 (1054)
Q Consensus 535 ~li~~~~l~~~V~~~g~~~----~~el~~ly~~Aa~~~Dv~i~ps~~Egfgl~l~EAmA~G~PVIat~~Gg~~eii~~~~ 610 (1054)
++++++++.++|.|+|+++ .+++..+|+.++ |+||+||..|+||++++||||||+|||+++.||+.|++.++.
T Consensus 631 ~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aa---DvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~ 707 (816)
T 3s28_A 631 DLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTK---GAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGK 707 (816)
T ss_dssp HHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTT---CEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTT
T ss_pred HHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHCC---EEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHCCCC
T ss_conf 99997499872898167556689999999999569---099988875576499999998099999968987699970698
Q ss_pred CEEEECCCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Q ss_conf 459919999999999999998----19999999999999998-60997999999999999805
Q 001557 611 NGLLVDPHDQQSIADALLKLV----SDKQLWERCRQNGLKNI-HQFSWPEHCKSYLSRISSCK 668 (1054)
Q Consensus 611 ~Gllv~p~d~~~la~aI~~ll----~d~~~~~~~~~~a~~~v-~~fsw~~~a~~yl~~l~~l~ 668 (1054)
+|++++|.|+++++++|.+++ .+++.++++++++++.+ +.|||+.++++|+++|....
T Consensus 708 ~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 708 SGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp TBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 189968999999999999999875269999999999999999986899999999999999976
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00 E-value=1 Score=382.48 Aligned_cols=443 Identities=32% Similarity=0.524 Sum_probs=318.6
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64299998304444567767899898870768999999998159994079998257679998976687631134443100
Q 001557 164 KKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTEN 243 (1054)
Q Consensus 164 ~~mkIllis~h~~~r~~~~elgr~~dtGG~~~~v~eLa~aLa~~~Gv~~V~vit~~~~~p~~~~~~~~~~e~l~~~~~~~ 243 (1054)
++|||++|+.++++.++++.+...+..||.++++.+|+++|+++ | |+|+|+|.....+.. ..|....+.
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~-G-~~V~v~~~~~~~~~~-~~~~~~~~~-------- 74 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEM-G-VQVDIITRRIKDENW-PEFSGEIDY-------- 74 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHT-T-CEEEEEEECCCBTTB-GGGCCSEEE--------
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHC-C-CEEEEEECCCCCCCC-CCHHHHHHH--------
T ss_conf 45249999657774434423478888799433499999999855-9-848999578872336-511356775--------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 00136888991999814899875533245799747899999999999999986431599999642999758970499999
Q 001557 244 LMQGLGESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAAL 323 (1054)
Q Consensus 244 ~~~~~~~~~gv~i~ri~~~~~~~~l~k~~l~~~l~~f~~~~l~~i~~~~~~L~~~~~~~~~~~pDIIh~h~~~~g~~a~~ 323 (1054)
.....|+.+++++..+. .+..+..+|.++..+...+... +.+. ..+|||||+|++.++.++..
T Consensus 75 ----~~~~~gv~v~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-------l~~~-----~~~~Divh~~~~~~~~~~~~ 137 (499)
T 2r60_A 75 ----YQETNKVRIVRIPFGGD-KFLPKEELWPYLHEYVNKIINF-------YREE-----GKFPQVVTTHYGDGGLAGVL 137 (499)
T ss_dssp ----CTTCSSEEEEEECCSCS-SCCCGGGCGGGHHHHHHHHHHH-------HHHH-----TCCCSEEEEEHHHHHHHHHH
T ss_pred ----CCCCCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHH-------HHHC-----CCCCCEEEECCCCCHHHHHH
T ss_conf ----06789817998257776-7768899999899999999999-------9853-----89988899757862079999
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHH--HCCC--
Q ss_conf 972599989999279832048999871778756465576799999999964302798995698899999954--0699--
Q 001557 324 LSGALNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRL--YDGF-- 399 (1054)
Q Consensus 324 l~~~~~iP~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~~~~~rri~~E~~~l~~Ad~Vi~~S~~~~~~~~~~--y~~~-- 399 (1054)
+++..++|+|+|.|+........+...+. ....+...+++..+...++.+++.+|.|+++|+...+.+... |+..
T Consensus 138 ~~~~~~~p~v~~~H~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~ 216 (499)
T 2r60_A 138 LKNIKGLPFTFTGHSLGAQKMEKLNVNTS-NFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVN 216 (499)
T ss_dssp HHHHHCCCEEEECSSCHHHHHHTTCCCST-TSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCC
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCC
T ss_conf 88735996899806840011134414787-76124556788899999999984689999888899999986412464223
Q ss_pred --CHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC-----CC
Q ss_conf --84789999996822644578889968994999868874458999887443367999999983157774211-----89
Q 001557 400 --DPVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFF-----SN 472 (1054)
Q Consensus 400 --~~~~~~~l~~r~~~gv~~~g~~~~kv~vIPnGID~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 472 (1054)
.+. ++.+||||+|...|.+.... ......+.++. ..
T Consensus 217 ~~~~~---------------------ki~vi~ngvd~~~~~~~~~~----------------~~~~~~r~~~~~~~~~~~ 259 (499)
T 2r60_A 217 VEDDD---------------------KFSVIPPGVNTRVFDGEYGD----------------KIKAKITKYLERDLGSER 259 (499)
T ss_dssp TTCGG---------------------GEEECCCCBCTTTSSSCCCH----------------HHHHHHHHHHHHHSCGGG
T ss_pred CCCCC---------------------CEEEECCCCCHHHCCCCCHH----------------HHHHHHHHHHCCCCCCCC
T ss_conf 46788---------------------76998799586656864103----------------567899988364334568
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCC----HHHHHCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99868999928998789999999998440236998399999339992----02201029999999999988199997883
Q 001557 473 PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI----DEMSGTNAALLLSILKLIDKYDLYGQVAY 548 (1054)
Q Consensus 473 ~~~~~IL~vgRld~~Kgi~~li~A~~~l~~~~~~~~l~LIiG~~~~~----~~~~~~~~~~~~~i~~li~~~~l~~~V~~ 548 (1054)
++.++|+++||+.+.||++.+++|+..+....+.....+|+|+.+.. ..+.....++...+.+++.++++.++|.|
T Consensus 260 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~ 339 (499)
T 2r60_A 260 MELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSM 339 (499)
T ss_dssp TTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEE
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88768999606850158899999999998738886599998788875322111132014799999999986499860998
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCEEECCCEEEECCCCHHHHHHHHH
Q ss_conf 99999894999999821399299963998998689999998498799906667422012077459919999999999999
Q 001557 549 PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALL 628 (1054)
Q Consensus 549 ~g~~~~~el~~ly~~Aa~~~Dv~i~ps~~Egfgl~l~EAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~~~la~aI~ 628 (1054)
+|+++.+++..+|+.|..+.|++|+||..|+||++++||||||+|||+++.||..|++.++.+|++++|.|+++++++|.
T Consensus 340 ~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~ 419 (499)
T 2r60_A 340 FPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLL 419 (499)
T ss_dssp EECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 78899899999999557679889978645897968999997699889816887788734786079958999999999999
Q ss_pred HHHHCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99819999999999999998-609979999999999998052099
Q 001557 629 KLVSDKQLWERCRQNGLKNI-HQFSWPEHCKSYLSRISSCKQRQP 672 (1054)
Q Consensus 629 ~ll~d~~~~~~~~~~a~~~v-~~fsw~~~a~~yl~~l~~l~~~~~ 672 (1054)
+++.+++.+.++++++++.+ +.|+|+.++++|+++|+.+.....
T Consensus 420 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~ 464 (499)
T 2r60_A 420 KAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKD 464 (499)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998699999999999999998757999999999999999873213
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=360.78 Aligned_cols=428 Identities=22% Similarity=0.283 Sum_probs=305.7
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64299998304444567767899898870768999999998159994079998257679998976687631134443100
Q 001557 164 KKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTEN 243 (1054)
Q Consensus 164 ~~mkIllis~h~~~r~~~~elgr~~dtGG~~~~v~eLa~aLa~~~Gv~~V~vit~~~~~p~~~~~~~~~~e~l~~~~~~~ 243 (1054)
++|||++|+.+.+ ++..||.++++.+|+++|+++ | |+|+|+|+....... ........+.. ...
T Consensus 1 r~MkIl~v~~~~~----------p~~~gG~~~~~~~la~~L~~~-G-~~V~v~~~~~~~~~~--~~~~~~~~~~~--~~~ 64 (439)
T 3fro_A 1 RHMKVLLLGFEFL----------PVKVGGLAEALTAISEALASL-G-HEVLVFTPSHGRFQG--EEIGKIRVFGE--EVQ 64 (439)
T ss_dssp CCCEEEEECSCCT----------TSCSSSHHHHHHHHHHHHHHT-T-CEEEEEEECTTCSCC--EEEEEEEETTE--EEE
T ss_pred CCEEEEEEECCCC----------CCCCCCHHHHHHHHHHHHHHC-C-CEEEEEECCCCCCHH--HHHCCCCCCCC--CCC
T ss_conf 9528999950217----------766688999999999999977-9-859998367788236--55246301476--531
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 00136888991999814899875533245799-74789999999999999998643159999964299975897049999
Q 001557 244 LMQGLGESSGAYIIRIPFGPKDKYVQKELLWP-HIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAA 322 (1054)
Q Consensus 244 ~~~~~~~~~gv~i~ri~~~~~~~~l~k~~l~~-~l~~f~~~~l~~i~~~~~~L~~~~~~~~~~~pDIIh~h~~~~g~~a~ 322 (1054)
........+|+.+++++. .++.+..++. +...+...+..+...+.+.+...+. +..+|||||+|++..+.++.
T Consensus 65 ~~~~~~~~~gv~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Dii~~~~~~~~~~~~ 138 (439)
T 3fro_A 65 VKVSYEERGNLRIYRIGG----GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLR--EEPLPDVVHFHDWHTVFAGA 138 (439)
T ss_dssp EEEEEEEETTEEEEEEES----GGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTT--TSCCCSEEEEESGGGHHHHH
T ss_pred EEEEECCCCCCEEEEECC----HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEECCHHHHHHHH
T ss_conf 024312578840899353----220521246677630023257899999999999744--47998199946403434589
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCH
Q ss_conf 997259998999927983204899-9871778756465576799999999964302798995698899999954069984
Q 001557 323 LLSGALNVPMVFTGHSLGRDKLEQ-LLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDP 401 (1054)
Q Consensus 323 ~l~~~~~iP~V~t~H~l~~~~~~~-l~~~g~~~~~~i~~~~~~~rri~~E~~~l~~Ad~Vi~~S~~~~~~~~~~y~~~~~ 401 (1054)
.+++..++|+|++.|+........ ......+.......... .++.+++.+|.|+++|+...+..++.+....
T Consensus 139 ~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~- 211 (439)
T 3fro_A 139 LIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDID------PEHTGGYIADIVTTVSRGYLIDEWGFFRNFE- 211 (439)
T ss_dssp HHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEEC------HHHHHHHHCSEEEESCHHHHHHTHHHHGGGT-
T ss_pred HHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCEEE------HHHHHHHHCCEEEECCHHHHHHHHHHHHHCC-
T ss_conf 886526997899965344456856774745510035666320------7666554345887268989999860565047-
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf 78999999682264457888996899499986887445899988744336799999998315777421189998689999
Q 001557 402 VLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILAL 481 (1054)
Q Consensus 402 ~~~~~l~~r~~~gv~~~g~~~~kv~vIPnGID~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~v 481 (1054)
.++.+||||+|...|.|..... .........+.++..+++ ++|+++
T Consensus 212 ---------------------~~i~vi~ngvd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~i~~~ 257 (439)
T 3fro_A 212 ---------------------GKITYVFNGIDCSFWNESYLTG------------SRDERKKSLLSKFGMDEG-VTFMFI 257 (439)
T ss_dssp ---------------------TSEEECCCCCCTTTSCGGGSCS------------CHHHHHHHHHHHHTCCSC-EEEEEE
T ss_pred ---------------------CCEEECCCCCCCHHCCCCCCCC------------HHHHHHHHHHHHCCCCCC-CEEEEE
T ss_conf ---------------------7345347888804308432211------------045669999997399998-479997
Q ss_pred ECCC-CCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHH
Q ss_conf 2899-87899999999984402369983999-993399920220102999999999998819999788399999894999
Q 001557 482 ARPD-PKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPD 559 (1054)
Q Consensus 482 gRld-~~Kgi~~li~A~~~l~~~~~~~~l~L-IiG~~~~~~~~~~~~~~~~~~i~~li~~~~l~~~V~~~g~~~~~el~~ 559 (1054)
||+. +.||++.+++|+..+......+++.| |+|+++. .+...+.+++.+++ +.+.|.|+++.+++..
T Consensus 258 G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~---------~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~~ 326 (439)
T 3fro_A 258 GRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP---------ELEGWARSLEEKHG--NVKVITEMLSREFVRE 326 (439)
T ss_dssp CCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH---------HHHHHHHHHHHHCT--TEEEECSCCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCH---------HHHHHHHHHHHHCC--CEEEECCCCCHHHHHH
T ss_conf 333534366999999999998546678718999807972---------67789999875069--8999728799889999
Q ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCEEECCCEEEECCCCHHHHHHHHHHHHH-CHHHHH
Q ss_conf 9998213992999639989986899999984987999066674220120774599199999999999999981-999999
Q 001557 560 IYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVS-DKQLWE 638 (1054)
Q Consensus 560 ly~~Aa~~~Dv~i~ps~~Egfgl~l~EAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~~~la~aI~~ll~-d~~~~~ 638 (1054)
+|+.| |++|+||..|+||++++||||||+|||+++.||..|++.++ +|++++|.|+++++++|.+++. +++.++
T Consensus 327 ~~~~a----dv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~ 401 (439)
T 3fro_A 327 LYGSV----DFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALELSRSDLS 401 (439)
T ss_dssp HHTTC----SEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEECC-CEEEECCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 99977----99995898788618999999779976973788743168758-44896889989999999999831999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999986099799999999999980520
Q 001557 639 RCRQNGLKNIHQFSWPEHCKSYLSRISSCKQR 670 (1054)
Q Consensus 639 ~~~~~a~~~v~~fsw~~~a~~yl~~l~~l~~~ 670 (1054)
++++++++.+++|+|+.++++|+++|+++..+
T Consensus 402 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 433 (439)
T 3fro_A 402 KFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 433 (439)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999876472999999999999999975
No 4
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=359.57 Aligned_cols=454 Identities=16% Similarity=0.175 Sum_probs=285.9
Q ss_pred HCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 103764299998304444567767899898870768999999998159994079998257679998976687-6311344
Q 001557 160 QYKEKKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAE-PSEMLNR 238 (1054)
Q Consensus 160 ~~~~~~mkIllis~h~~~r~~~~elgr~~dtGG~~~~v~eLa~aLa~~~Gv~~V~vit~~~~~p~~~~~~~~-~~e~l~~ 238 (1054)
.++..+|||++||.+.. |+ ..+||...++..|+++|+++ | |+|.|+++.+.. +...... ....+..
T Consensus 4 ~~~~~~MkIl~vs~E~~----P~-----~K~GGLadvv~~L~~aL~~~-G-~~V~Vi~P~Y~~--~~~~~~~~~~~~~~~ 70 (536)
T 3vue_A 4 HHHHHHMNVVFVGAEMA----PW-----SKTGGLGDVLGGLPPAMAAN-G-HRVMVISPRYDQ--YKDAWDTSVVAEIKV 70 (536)
T ss_dssp ----CCCEEEEECSCBT----TT-----BCSSHHHHHHHHHHHHHHTT-T-CEEEEEEECCSC--CTTCEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEECC----CH-----HCCCCHHHHHHHHHHHHHHC-C-CEEEEEECCCHH--HHHHCCCCEEEEEEE
T ss_conf 66899738999987243----12-----12676999999999999976-9-969999048502--224226516899983
Q ss_pred C-CCCCCCCCCCCCCCEEEEECCCCCCCCCCCC------CCCCC--CHHHHHHHHHHHHHHHHHHHH---HHHCC-----
Q ss_conf 4-3100001368889919998148998755332------45799--747899999999999999986---43159-----
Q 001557 239 K-NTENLMQGLGESSGAYIIRIPFGPKDKYVQK------ELLWP--HIPEFVDAALTHIIQISKVLG---EQVGS----- 301 (1054)
Q Consensus 239 ~-~~~~~~~~~~~~~gv~i~ri~~~~~~~~l~k------~~l~~--~l~~f~~~~l~~i~~~~~~L~---~~~~~----- 301 (1054)
. ......-.....+|+.++.+... .|+.+ ..++. ....+.|...++..- .++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~gv~~y~id~~---~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f-~~a~l~~~~~l~~~~~~~ 146 (536)
T 3vue_A 71 ADRYERVRFFHCYKRGVDRVFIDHP---SFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLL-CQAALEAPRILNLNNNPY 146 (536)
T ss_dssp TTEEEEEEEEECEETTEEEEEEECT---TTTCC------------------CHHHHHHHHH-HHHHHHHHHHCCCCCCTT
T ss_pred CCCEEEEEEEEEEECCCEEEEECCH---HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHCCCCCHH
T ss_conf 6833789999999789559996475---541233466778666887567664179999999-999999999730265301
Q ss_pred --CCCCCCEEEEECCCCCHHHHHHHHCC-------CCCCEEEEECCCCCCHH---HHHHHHCCCCHHHHHH-----HH--
Q ss_conf --99996429997589704999999725-------99989999279832048---9998717787564655-----76--
Q 001557 302 --GQPIWPVAIHGHYADAGDAAALLSGA-------LNVPMVFTGHSLGRDKL---EQLLKQGRLSRDEINT-----TY-- 362 (1054)
Q Consensus 302 --~~~~~pDIIh~h~~~~g~~a~~l~~~-------~~iP~V~t~H~l~~~~~---~~l~~~g~~~~~~i~~-----~~-- 362 (1054)
.....|||+|+|+|.+++++.++... .++|+|+|+|++..+.. ..+...+. ....... .+
T Consensus 147 ~~~~~~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 225 (536)
T 3vue_A 147 FKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNL-SERFRSSFDFIDGYDT 225 (536)
T ss_dssp CCSCCCSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCC-CGGGHHHHEEEETTTS
T ss_pred HHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCC-CHHHCCHHHHHHCCCC
T ss_conf 101479987999776048999999998640233202563454215742245555333644189-6564010333311464
Q ss_pred -HHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC-CCCCCEEEECCCCCCCCCCCC
Q ss_conf -799999999964302798995698899999954069984789999996822644578-889968994999868874458
Q 001557 363 -KIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRGVSCHG-RFMPRMVVIPPGIEFHHIVRH 440 (1054)
Q Consensus 363 -~~~rri~~E~~~l~~Ad~Vi~~S~~~~~~~~~~y~~~~~~~~~~l~~r~~~gv~~~g-~~~~kv~vIPnGID~~~f~p~ 440 (1054)
.....+..++..+..||.|+|+|+.+++++...+... ....+ ....++.+||||||.+.|.|.
T Consensus 226 ~~~~~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g---------------~~l~~~~~~~~i~~I~NGiD~~~~~p~ 290 (536)
T 3vue_A 226 PVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARG---------------CELDNIMRLTGITGIVNGMDVSEWDPS 290 (536)
T ss_dssp TTCEEEEEHHHHHHHHCSEEEESCHHHHHHHHTTCCCC---------------SSSCCCSCCCSCEECCCCCCTTTSCTT
T ss_pred CCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCC---------------CCCCCCCCCCCEEEEECCCCHHHCCCC
T ss_conf 10033043999999853677876878853431263445---------------220012545781899799664214887
Q ss_pred CCCCCCCCCCCCCCCC--CCCC-CHHHHHHHH--CCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 9998874433679999--9998-315777421--1899986899992899878999999999844023699839999933
Q 001557 441 NGDVDGEVERDEGSPA--SPDP-PIWSEIMHF--FSNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGN 515 (1054)
Q Consensus 441 ~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~--~~~~~~~~IL~vgRld~~Kgi~~li~A~~~l~~~~~~~~l~LIiG~ 515 (1054)
.... +........ .... .......++ ..+++.|+|+++||+.+.||++.+++|+.++. .+.+++ +++|.
T Consensus 291 ~d~~---~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~--~~~~~l-~l~G~ 364 (536)
T 3vue_A 291 KDKY---ITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELM--QEDVQI-VLLGT 364 (536)
T ss_dssp TCSS---SSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHT--TSSCEE-EEECC
T ss_pred CCCC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH--HHCCEE-EEEEC
T ss_conf 7621---00144434555656777999998619987999758999965302378478999999768--549859-99954
Q ss_pred CCCCHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 99920220102999999999998819999788399999894999999821399299963998998689999998498799
Q 001557 516 RDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIV 595 (1054)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~li~~~~l~~~V~~~g~~~~~el~~ly~~Aa~~~Dv~i~ps~~Egfgl~l~EAmA~G~PVI 595 (1054)
++. .....+......+. .++.+.+..+.+++..+|+.| |+||+||+.||||++++|||+||+|||
T Consensus 365 G~~---------~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~a----D~~v~PS~~E~fgl~~lEAma~G~PvI 429 (536)
T 3vue_A 365 GKK---------KFEKLLKSMEEKYP--GKVRAVVKFNAPLAHLIMAGA----DVLAVPSRFEPCGLIQLQGMRYGTPCA 429 (536)
T ss_dssp BCH---------HHHHHHHHHHHHST--TTEEEECSCCHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHTTCCEE
T ss_pred CCC---------HHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHH----HEEECCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 672---------68999999876168--854999714688899999862----342534656898889999998699899
Q ss_pred ECCCCCCCCCEEECCCEE----------EECCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 906667422012077459----------9199999999999999981--9999999999999998609979999999999
Q 001557 596 ATKNGGPVDIHRVLDNGL----------LVDPHDQQSIADALLKLVS--DKQLWERCRQNGLKNIHQFSWPEHCKSYLSR 663 (1054)
Q Consensus 596 at~~Gg~~eii~~~~~Gl----------lv~p~d~~~la~aI~~ll~--d~~~~~~~~~~a~~~v~~fsw~~~a~~yl~~ 663 (1054)
+++.||.+|+|.++.+|+ +|+|.|+++++++|.+++. +.+.|+++.+++++ ++|||++.|++|+++
T Consensus 430 ~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~~~~~~~~am~--~~fSW~~~A~~y~~l 507 (536)
T 3vue_A 430 CASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMN--QDLSWKGPAKNWENV 507 (536)
T ss_dssp ECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH--SCCSSHHHHHHHHHH
T ss_pred ECCCCCCHHEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_conf 907998222022798763246677751587999999999999999985295999999999877--359999999999999
Q ss_pred HHHHHH
Q ss_conf 998052
Q 001557 664 ISSCKQ 669 (1054)
Q Consensus 664 l~~l~~ 669 (1054)
|+++..
T Consensus 508 y~~L~~ 513 (536)
T 3vue_A 508 LLGLGV 513 (536)
T ss_dssp HHTTCC
T ss_pred HHHHHH
T ss_conf 998604
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00 E-value=1 Score=354.46 Aligned_cols=411 Identities=23% Similarity=0.329 Sum_probs=300.5
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64299998304444567767899898870768999999998159994079998257679998976687631134443100
Q 001557 164 KKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTEN 243 (1054)
Q Consensus 164 ~~mkIllis~h~~~r~~~~elgr~~dtGG~~~~v~eLa~aLa~~~Gv~~V~vit~~~~~p~~~~~~~~~~e~l~~~~~~~ 243 (1054)
+.|||++|+.+.+ |...+.....||.+.++.+|+++|+++ | |+|+|+|...... ......
T Consensus 19 ~mmkIl~i~~~~~----p~~~~~~~~~GG~~~~~~~la~~L~~~-G-~~V~v~~~~~~~~------~~~~~~-------- 78 (438)
T 3c48_A 19 SHMRVAMISMHTS----PLQQPGTGDSGGMNVYILSTATELAKQ-G-IEVDIYTRATRPS------QGEIVR-------- 78 (438)
T ss_dssp CCCEEEEECTTSC----TTCC-------CHHHHHHHHHHHHHHT-T-CEEEEEEECCCGG------GCSEEE--------
T ss_pred CHHEEEEEEEECC----CCCCCCCCCCCCHHHHHHHHHHHHHHC-C-CEEEEEECCCCCC------CCCCCC--------
T ss_conf 0203345775325----634678788787999999999999966-9-9799995478877------754002--------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 00136888991999814899875533245799747899999999999999986431599999642999758970499999
Q 001557 244 LMQGLGESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAAL 323 (1054)
Q Consensus 244 ~~~~~~~~~gv~i~ri~~~~~~~~l~k~~l~~~l~~f~~~~l~~i~~~~~~L~~~~~~~~~~~pDIIh~h~~~~g~~a~~ 323 (1054)
...|+.+++++..+. ..+.+..++..+..|...++... +.. . .+|||||+|++..+.++..
T Consensus 79 ------~~~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~----~--~~~Div~~~~~~~~~~~~~ 139 (438)
T 3c48_A 79 ------VAENLRVINIAAGPY-EGLSKEELPTQLAAFTGGMLSFT------RRE----K--VTYDLIHSHYWLSGQVGWL 139 (438)
T ss_dssp ------EETTEEEEEECCSCS-SSCCGGGGGGGHHHHHHHHHHHH------HHH----T--CCCSEEEEEHHHHHHHHHH
T ss_pred ------CCCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHH------HHC----C--CCCCEEEECCCCHHHHHHH
T ss_conf ------568748999247875-43236677899999999999999------841----6--8999899477557899999
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCHHH
Q ss_conf 97259998999927983204899987177875646557679999999996430279899569889999995406998478
Q 001557 324 LSGALNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVL 403 (1054)
Q Consensus 324 l~~~~~iP~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~~~~~rri~~E~~~l~~Ad~Vi~~S~~~~~~~~~~y~~~~~~~ 403 (1054)
+++..++|+|++.|+.+......+ .... ......+...+...++.+|.|+++|+...+.+...|+.. +
T Consensus 140 ~~~~~~~p~v~~~h~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~-~-- 207 (438)
T 3c48_A 140 LRDLWRIPLIHTAHTLAAVKNSYR------DDSD---TPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDAD-P-- 207 (438)
T ss_dssp HHHHHTCCEEEECSSCHHHHSCC----------C---CHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCC-G--
T ss_pred HHHHCCCCEEEEECCCCCCCCCCC------CCCC---CCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCC-H--
T ss_conf 999749998999427740111110------0267---731578999999998408999984799999999985898-2--
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 99999968226445788899689949998688744589998874433679999999831577742118999868999928
Q 001557 404 ERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALAR 483 (1054)
Q Consensus 404 ~~~l~~r~~~gv~~~g~~~~kv~vIPnGID~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~vgR 483 (1054)
.++.+||||+|...|.+... ......+..+...++.++|+++||
T Consensus 208 -------------------~k~~vi~ngvd~~~~~~~~~-----------------~~~~~~r~~~~~~~~~~~i~~~G~ 251 (438)
T 3c48_A 208 -------------------DRISVVSPGADVELYSPGND-----------------RATERSRRELGIPLHTKVVAFVGR 251 (438)
T ss_dssp -------------------GGEEECCCCCCTTTSCCC---------------------CHHHHHHTTCCSSSEEEEEESC
T ss_pred -------------------HHEEEECCCCCCCCCCCCCC-----------------CHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf -------------------02688269766110478662-----------------024566886089989848999743
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHH
Q ss_conf 9987899999999984402369983999-993399920220102999999999998819999788399999894999999
Q 001557 484 PDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYR 562 (1054)
Q Consensus 484 ld~~Kgi~~li~A~~~l~~~~~~~~l~L-IiG~~~~~~~~~~~~~~~~~~i~~li~~~~l~~~V~~~g~~~~~el~~ly~ 562 (1054)
+.+.||++.+++|+..+....+..++.| |+|+.... ......+.+++.++++.++|.|.|+++.+++..+|+
T Consensus 252 ~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~-------g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~ 324 (438)
T 3c48_A 252 LQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGP-------NATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYR 324 (438)
T ss_dssp BSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC-------------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-------CCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHH
T ss_conf 1566798999999999996397766699998188877-------727899999999719878689858898588999998
Q ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCEEECCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 82139929996399899868999999849879990666742201207745991999999999999999819999999999
Q 001557 563 LAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLWERCRQ 642 (1054)
Q Consensus 563 ~Aa~~~Dv~i~ps~~Egfgl~l~EAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~~~la~aI~~ll~d~~~~~~~~~ 642 (1054)
.| |++|+||..|+||++++|||+||+|||+++.|+..|++.++.+|+++++.|+++++++|.+++.+++.+.++++
T Consensus 325 ~a----dv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~ 400 (438)
T 3c48_A 325 AA----DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGE 400 (438)
T ss_dssp HC----SEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 58----99998740268755999998769988962798725775079727987999999999999999759899999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999998609979999999999998052099
Q 001557 643 NGLKNIHQFSWPEHCKSYLSRISSCKQRQP 672 (1054)
Q Consensus 643 ~a~~~v~~fsw~~~a~~yl~~l~~l~~~~~ 672 (1054)
++++.++.|+|+.++++|+++|+.+.....
T Consensus 401 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3c48_A 401 DAVEHARTFSWAATAAQLSSLYNDAIANEN 430 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998857999999999999999863136
No 6
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=333.65 Aligned_cols=443 Identities=18% Similarity=0.161 Sum_probs=277.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC--CCCC--CCCCC
Q ss_conf 2999983044445677678998988707689999999981599940799982576799989766876--3113--44431
Q 001557 166 LYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEP--SEML--NRKNT 241 (1054)
Q Consensus 166 mkIllis~h~~~r~~~~elgr~~dtGG~~~~v~eLa~aLa~~~Gv~~V~vit~~~~~p~~~~~~~~~--~e~l--~~~~~ 241 (1054)
|||++|+.+.++ .+..||.+.++.+|+++|+++ | |+|+|+|....... ..+... ...+ ..+..
T Consensus 1 MkIl~v~~~~~P---------~~~~GG~~~~~~~la~~L~~~-G-~~V~vi~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 67 (485)
T 1rzu_A 1 MNVLSVSSEIYP---------LIKTGGLADVVGALPIALEAH-G-VRTRTLIPGYPAVK--AAVTDPVKCFEFTDLLGEK 67 (485)
T ss_dssp CEEEEECSCBTT---------TBCSSHHHHHHHHHHHHHHTT-T-CEEEEEEECCHHHH--HHCCSCEEEEEESCSSSCC
T ss_pred CEEEEEEEEECC---------CCCCCCHHHHHHHHHHHHHHC-C-CEEEEEECCCCCCC--CCCCCCCEEEEEEEECCCE
T ss_conf 969999446515---------656654999999999999976-9-86999915644334--4435651368999830874
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 000013688899199981489987553324---------57997478999999999999999864315999996429997
Q 001557 242 ENLMQGLGESSGAYIIRIPFGPKDKYVQKE---------LLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHG 312 (1054)
Q Consensus 242 ~~~~~~~~~~~gv~i~ri~~~~~~~~l~k~---------~l~~~l~~f~~~~l~~i~~~~~~L~~~~~~~~~~~pDIIh~ 312 (1054)
... ......|+.+++++... +..+. .-|+.... .+..+...+.+.+.. + .+..+|||||+
T Consensus 68 ~~~--~~~~~~gv~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~--~~~~~~DiIh~ 136 (485)
T 1rzu_A 68 ADL--LEVQHERLDLLILDAPA---YYERSGGPYLGQTGKDYPDNWK---RFAALSLAAARIGAG-V--LPGWRPDMVHA 136 (485)
T ss_dssp EEE--EEEEETTEEEEEEECHH---HHCSSSCSSBCTTSSBCTTHHH---HHHHHHHHHHHHHTT-C--SSSCCCSEEEE
T ss_pred EEE--EEEEECCCEEEEEECHH---HHCCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHH-H--CCCCCCCEEEE
T ss_conf 789--99996695699984867---7277766558865666530679---999999999999998-6--15799988996
Q ss_pred CCCCCHHHHHHHHCC--CCCCEEEEECCCCCCHH---HHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHCCCCEEEECCH
Q ss_conf 589704999999725--99989999279832048---9998717787564655-76799999999964302798995698
Q 001557 313 HYADAGDAAALLSGA--LNVPMVFTGHSLGRDKL---EQLLKQGRLSRDEINT-TYKIMRRIEAEELSLDASEIVITSTR 386 (1054)
Q Consensus 313 h~~~~g~~a~~l~~~--~~iP~V~t~H~l~~~~~---~~l~~~g~~~~~~i~~-~~~~~rri~~E~~~l~~Ad~Vi~~S~ 386 (1054)
|.+.++.++..++.. .++|+|+|.|+.+.... ..+...+. ....... ...+......++.+++.+|.|+++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~ 215 (485)
T 1rzu_A 137 HDWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLAL-PAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSP 215 (485)
T ss_dssp EHHHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCC-CGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCH
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCC-CHHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCH
T ss_conf 463055789997310358997899966754468788778734399-8032020001325623599988864677996087
Q ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHH
Q ss_conf 899999954-06998478999999682264457888996899499986887445899988744336799999998-3157
Q 001557 387 QEIEEQWRL-YDGFDPVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDP-PIWS 464 (1054)
Q Consensus 387 ~~~~~~~~~-y~~~~~~~~~~l~~r~~~gv~~~g~~~~kv~vIPnGID~~~f~p~~~~~~~~~~~~~~~~~~~~~-~~~~ 464 (1054)
...+.+... |+.-. ... ++....++.+||||+|...|.|....... ..+......... ....
T Consensus 216 ~~~~~~~~~~~g~~~---~~~-----------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 279 (485)
T 1rzu_A 216 SYAEEILTAEFGMGL---EGV-----------IGSRAHVLHGIVNGIDADVWNPATDHLIH--DNYSAANLKNRALNKKA 279 (485)
T ss_dssp HHHHHTTSHHHHTTC---HHH-----------HHTTGGGEEECCCCBCTTTSCTTTCTTSS--SCCBTTBCTTHHHHHHH
T ss_pred HHHHHHHCCCCCCCH---HHH-----------HHHHCCCCEEECCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHH
T ss_conf 589998354357665---899-----------98606881697089860205886651100--01243244567886999
Q ss_pred HHHHHCCCCC-CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCHHHHHCHHHHHHHHHHHHHHCCC
Q ss_conf 7742118999-8689999289987899999999984402369983999-9933999202201029999999999988199
Q 001557 465 EIMHFFSNPR-KPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSGTNAALLLSILKLIDKYDL 542 (1054)
Q Consensus 465 ~~~~~~~~~~-~~~IL~vgRld~~Kgi~~li~A~~~l~~~~~~~~l~L-IiG~~~~~~~~~~~~~~~~~~i~~li~~~~l 542 (1054)
.+.++...++ .++|+++||+.+.||++.+++|+..+.. + ++.| |+|+++. .+...+.+++.+++
T Consensus 280 ~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~--~~~l~ivG~g~~---------~~~~~l~~~~~~~~- 345 (485)
T 1rzu_A 280 VAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--L--GGRLVVLGAGDV---------ALEGALLAAASRHH- 345 (485)
T ss_dssp HHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--T--TCEEEEEECBCH---------HHHHHHHHHHHHTT-
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--C--CCEEEEEECCCH---------HHHHHHHHHHHHCC-
T ss_conf 999629888998399997257531287999999999872--6--956999968946---------89999999998678-
Q ss_pred CCCEE-ECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCEEEC---------CCE
Q ss_conf 99788-39999989499999982139929996399899868999999849879990666742201207---------745
Q 001557 543 YGQVA-YPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVL---------DNG 612 (1054)
Q Consensus 543 ~~~V~-~~g~~~~~el~~ly~~Aa~~~Dv~i~ps~~Egfgl~l~EAmA~G~PVIat~~Gg~~eii~~~---------~~G 612 (1054)
++|. |.|+ +.+++..+|+.| |++|+||..|+||++++||||||+|||+++.||..|++.++ .+|
T Consensus 346 -~~v~~~~g~-~~~~~~~~~~~a----dv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G 419 (485)
T 1rzu_A 346 -GRVGVAIGY-NEPLSHLMQAGC----DAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATG 419 (485)
T ss_dssp -TTEEEEESC-CHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCB
T ss_pred -CCEEEECCC-CHHHHHHHHHCC----CEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHEECCCCCCCCCCCCCCC
T ss_conf -868994389-979999998529----99997844688777999999779977980899831132156533234567763
Q ss_pred EEECCCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9919999999999999998---1999999999999999860997999999999999805209
Q 001557 613 LLVDPHDQQSIADALLKLV---SDKQLWERCRQNGLKNIHQFSWPEHCKSYLSRISSCKQRQ 671 (1054)
Q Consensus 613 llv~p~d~~~la~aI~~ll---~d~~~~~~~~~~a~~~v~~fsw~~~a~~yl~~l~~l~~~~ 671 (1054)
+++++.|+++++++|.+++ .+++.++++++++++ +.|+|+.++++|+++|+.+....
T Consensus 420 ~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 420 VQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYAALYSQLISKG 479 (485)
T ss_dssp EEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHHHHHHHHTC--
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 4867899999999999999872799999999999998--86896999999999999863799
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=333.51 Aligned_cols=445 Identities=17% Similarity=0.142 Sum_probs=277.4
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC--CCCCC-CCCCC
Q ss_conf 2999983044445677678998988707689999999981599940799982576799989766876--31134-44310
Q 001557 166 LYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEP--SEMLN-RKNTE 242 (1054)
Q Consensus 166 mkIllis~h~~~r~~~~elgr~~dtGG~~~~v~eLa~aLa~~~Gv~~V~vit~~~~~p~~~~~~~~~--~e~l~-~~~~~ 242 (1054)
|||++|+.+.++ .+..||.+.++.+|+++|+++ | |+|+|+|....... ..+... ..... .+...
T Consensus 1 MkIl~v~~~~~P---------~~~~GG~~~~~~~la~~L~~~-G-~~V~vi~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 67 (485)
T 2qzs_A 1 MQVLHVCSEMFP---------LLKTGGLADVIGALPAAQIAD-G-VDARVLLPAFPDIR--RGVTDAQVVSRRDTFAGHI 67 (485)
T ss_dssp CEEEEECSCBTT---------TBCSSHHHHHHHHHHHHHHHT-T-CEEEEEEECCHHHH--HHCTTCEEEEEECCTTCCE
T ss_pred CEEEEEEEECCC---------CCCCCCHHHHHHHHHHHHHHC-C-CEEEEEECCCCCCC--CCCCCCEEEEEECCCCCCE
T ss_conf 969999641046---------656773999999999999974-9-87899944764345--4345640578741568717
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CC------CCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCEEEEECC
Q ss_conf 000136888991999814899875533245-79------97478999999999999999864315999-99642999758
Q 001557 243 NLMQGLGESSGAYIIRIPFGPKDKYVQKEL-LW------PHIPEFVDAALTHIIQISKVLGEQVGSGQ-PIWPVAIHGHY 314 (1054)
Q Consensus 243 ~~~~~~~~~~gv~i~ri~~~~~~~~l~k~~-l~------~~l~~f~~~~l~~i~~~~~~L~~~~~~~~-~~~pDIIh~h~ 314 (1054)
.. .....+|+.+++++... +..+.. .+ ++..... .+..+...+.+ .+.... ..+|||||+|.
T Consensus 68 ~~--~~~~~~gv~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~Divh~~~ 137 (485)
T 2qzs_A 68 TL--LFGHYNGVGIYLIDAPH---LYDRPGSPYHDTNLFAYTDNVL-RFALLGWVGAE----MASGLDPFWRPDVVHAHD 137 (485)
T ss_dssp EE--EEEEETTEEEEEEECHH---HHCCSSCSSBCTTSCBCTTHHH-HHHHHHHHHHH----HTTTSSTTCCCSEEEEET
T ss_pred EE--EEEEECCCEEEEEECHH---HCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHH----HHHHHCCCCCCCEEEEEC
T ss_conf 99--99987894799970826---5068987667754577873589-99999999999----999845678997899606
Q ss_pred CCCHHHHHHHH-CCCCCCEEEEECCCCCCHH---HHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf 97049999997-2599989999279832048---9998717787564655-76799999999964302798995698899
Q 001557 315 ADAGDAAALLS-GALNVPMVFTGHSLGRDKL---EQLLKQGRLSRDEINT-TYKIMRRIEAEELSLDASEIVITSTRQEI 389 (1054)
Q Consensus 315 ~~~g~~a~~l~-~~~~iP~V~t~H~l~~~~~---~~l~~~g~~~~~~i~~-~~~~~rri~~E~~~l~~Ad~Vi~~S~~~~ 389 (1054)
+.++.++..++ +..++|+|+|.|+...... ..+...+. ....... ...+......++.+++.+|.|+++|+...
T Consensus 138 ~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 216 (485)
T 2qzs_A 138 WHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQL-PWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYA 216 (485)
T ss_dssp GGGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTC-CGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHH
T ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCC-CCHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHH
T ss_conf 213378999754368997899946841357889888876499-9132131112324654699999875386885688999
Q ss_pred HHHHHH-HCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHH
Q ss_conf 999954-06998478999999682264457888996899499986887445899988744336799999998-3157774
Q 001557 390 EEQWRL-YDGFDPVLERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDP-PIWSEIM 467 (1054)
Q Consensus 390 ~~~~~~-y~~~~~~~~~~l~~r~~~gv~~~g~~~~kv~vIPnGID~~~f~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 467 (1054)
+.+... |+... ...++... ...++.+||||+|...|.+....... ..+......... .....+.
T Consensus 217 ~~~~~~~~~~~~---~~~~~~~~---------~~~~~~vi~ngvd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~ 282 (485)
T 2qzs_A 217 REITEPQFAYGM---EGLLQQRH---------REGRLSGVLNGVDEKIWSPETDLLLA--SRYTRDTLEDKAENKRQLQI 282 (485)
T ss_dssp HHTTSHHHHTTC---HHHHHHHH---------HTTCEEECCCCCCTTTSCTTTCTTSS--SCCCTTCGGGGHHHHHHHHH
T ss_pred HHHHCCCCCCCH---HHHHHHHC---------CCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHH
T ss_conf 998540147246---89998506---------67866997469876645864442221--23663006577884999998
Q ss_pred HHCCCC--CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 211899--98689999289987899999999984402369983999-993399920220102999999999998819999
Q 001557 468 HFFSNP--RKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSGTNAALLLSILKLIDKYDLYG 544 (1054)
Q Consensus 468 ~~~~~~--~~~~IL~vgRld~~Kgi~~li~A~~~l~~~~~~~~l~L-IiG~~~~~~~~~~~~~~~~~~i~~li~~~~l~~ 544 (1054)
++...+ +.++|+++||+.+.||++.+++|+..+.. + ++.| |+|+++. .+...+.+++.+++ +
T Consensus 283 ~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~--~~~l~ivG~g~~---------~~~~~l~~~~~~~~--~ 347 (485)
T 2qzs_A 283 AMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--Q--GGQLALLGAGDP---------VLQEGFLAAAAEYP--G 347 (485)
T ss_dssp HHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--T--TCEEEEEEEECH---------HHHHHHHHHHHHST--T
T ss_pred HCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--C--CCEEEEEECCCH---------HHHHHHHHHHHHCC--C
T ss_conf 7198889997399996667543587999999999862--7--948999928956---------78999999997579--9
Q ss_pred CEE-ECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCEEEC---------CCEEE
Q ss_conf 788-39999989499999982139929996399899868999999849879990666742201207---------74599
Q 001557 545 QVA-YPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVL---------DNGLL 614 (1054)
Q Consensus 545 ~V~-~~g~~~~~el~~ly~~Aa~~~Dv~i~ps~~Egfgl~l~EAmA~G~PVIat~~Gg~~eii~~~---------~~Gll 614 (1054)
+|. +.|+ +.+++..+|+.| |++|+||..|+||++++||||||+|||+++.||..|++.++ .+|++
T Consensus 348 ~v~~~~g~-~~~~~~~~~~~a----dv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l 422 (485)
T 2qzs_A 348 QVGVQIGY-HEAFSHRIMGGA----DVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFV 422 (485)
T ss_dssp TEEEEESC-CHHHHHHHHHHC----SEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEE
T ss_pred CEEEECCC-CHHHHHHHHHHC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEECCCCCCCCCCCCCCEEE
T ss_conf 38994789-979999999758----8999788567876799999977997798789983255215764434446664599
Q ss_pred ECCCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 19999999999999998---199999999999999986099799999999999980520
Q 001557 615 VDPHDQQSIADALLKLV---SDKQLWERCRQNGLKNIHQFSWPEHCKSYLSRISSCKQR 670 (1054)
Q Consensus 615 v~p~d~~~la~aI~~ll---~d~~~~~~~~~~a~~~v~~fsw~~~a~~yl~~l~~l~~~ 670 (1054)
+++.|+++++++|.+++ .+++.++++++++++ +.|+|+.++++|+++|+.+...
T Consensus 423 ~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 423 FEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYRELYYRLKLE 479 (485)
T ss_dssp ECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC--
T ss_pred ECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHH
T ss_conf 77899999999999999870899999999999876--3289899999999999986542
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=1.00 E-value=1 Score=317.38 Aligned_cols=371 Identities=16% Similarity=0.200 Sum_probs=276.4
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64299998304444567767899898870768999999998159994079998257679998976687631134443100
Q 001557 164 KKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTEN 243 (1054)
Q Consensus 164 ~~mkIllis~h~~~r~~~~elgr~~dtGG~~~~v~eLa~aLa~~~Gv~~V~vit~~~~~p~~~~~~~~~~e~l~~~~~~~ 243 (1054)
++|||++++.... |..||.++++..|+++| . | |+|+|++....... .
T Consensus 3 ~~mkIl~v~~~~~-----------p~~gG~~~~~~~l~~~L--~-g-~~v~v~~~~~~~~~--------~---------- 49 (394)
T 3okp_A 3 ASRKTLVVTNDFP-----------PRIGGIQSYLRDFIATQ--D-P-ESIVVFASTQNAEE--------A---------- 49 (394)
T ss_dssp -CCCEEEEESCCT-----------TSCSHHHHHHHHHHTTS--C-G-GGEEEEEECSSHHH--------H----------
T ss_pred CCCEEEEEECCCC-----------CCCCHHHHHHHHHHHHH--C-C-CEEEEEECCCCCCC--------H----------
T ss_conf 8866999927668-----------86551999999999985--6-9-76899977888642--------4----------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 00136888991999814899875533245799747899999999999999986431599999642999758970499999
Q 001557 244 LMQGLGESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAAL 323 (1054)
Q Consensus 244 ~~~~~~~~~gv~i~ri~~~~~~~~l~k~~l~~~l~~f~~~~l~~i~~~~~~L~~~~~~~~~~~pDIIh~h~~~~g~~a~~ 323 (1054)
.......++.+++++.... ++.. .+... +.+.+.+ .+||+||+|..........
T Consensus 50 --~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~-------l~~~~~~-------~~~Dvv~~~~~~~~~~~~~ 103 (394)
T 3okp_A 50 --HAYDKTLDYEVIRWPRSVM---------LPTP-TTAHA-------MAEIIRE-------REIDNVWFGAAAPLALMAG 103 (394)
T ss_dssp --HHHHTTCSSEEEEESSSSC---------CSCH-HHHHH-------HHHHHHH-------TTCSEEEESSCTTGGGGHH
T ss_pred --HHHCCCCCEEEEECCCCCC---------CCCH-HHHHH-------HHHHHHH-------CCCCEEEECCCCHHHHHHH
T ss_conf --4433456628998456545---------5551-46999-------9999876-------3898899888544889999
Q ss_pred HHCCCCCC-EEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCHH
Q ss_conf 97259998-99992798320489998717787564655767999999999643027989956988999999540699847
Q 001557 324 LSGALNVP-MVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPV 402 (1054)
Q Consensus 324 l~~~~~iP-~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~~~~~rri~~E~~~l~~Ad~Vi~~S~~~~~~~~~~y~~~~~~ 402 (1054)
+++..++| +|++.|+...... .....++ .++..++.+|.|+++|+...+.+...+.. .
T Consensus 104 ~~~~~~~~~~i~~~h~~~~~~~----------------~~~~~~~--~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~-- 162 (394)
T 3okp_A 104 TAKQAGASKVIASTHGHEVGWS----------------MLPGSRQ--SLRKIGTEVDVLTYISQYTLRRFKSAFGS-H-- 162 (394)
T ss_dssp HHHHTTCSEEEEECCSTHHHHT----------------TSHHHHH--HHHHHHHHCSEEEESCHHHHHHHHHHHCS-S--
T ss_pred HHHHCCCCCEEEEECCCHHHHH----------------HCCHHHH--HHHHHHHHCCEEEECCHHHHHHHHHHCCC-C--
T ss_conf 9975189819999346423332----------------1220348--99999986797997688999999984189-9--
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 89999996822644578889968994999868874458999887443367999999983157774211899986899992
Q 001557 403 LERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALA 482 (1054)
Q Consensus 403 ~~~~l~~r~~~gv~~~g~~~~kv~vIPnGID~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~vg 482 (1054)
+++.+||||+|...|.+... ......+..+...++.++|+++|
T Consensus 163 --------------------~~~~vi~ngv~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~i~~~G 205 (394)
T 3okp_A 163 --------------------PTFEHLPSGVDVKRFTPATP-----------------EDKSATRKKLGFTDTTPVIACNS 205 (394)
T ss_dssp --------------------SEEEECCCCBCTTTSCCCCH-----------------HHHHHHHHHTTCCTTCCEEEEES
T ss_pred --------------------CCEEEECCCCCHHHCCCCCC-----------------HHHHHHHHHCCCCCCCEEEEEEE
T ss_conf --------------------98588369858887588772-----------------14689998649985766999976
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 89987899999999984402369983999-99339992022010299999999999881999978839999989499999
Q 001557 483 RPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIY 561 (1054)
Q Consensus 483 Rld~~Kgi~~li~A~~~l~~~~~~~~l~L-IiG~~~~~~~~~~~~~~~~~~i~~li~~~~l~~~V~~~g~~~~~el~~ly 561 (1054)
|+.+.||++.+++|+..+....+ ++.| |+|+++.. ..+.+++ .++.++|.|.|+++.+++..+|
T Consensus 206 ~~~~~Kg~~~li~a~~~l~~~~~--~~~l~i~G~g~~~-----------~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~ 270 (394)
T 3okp_A 206 RLVPRKGQDSLIKAMPQVIAARP--DAQLLIVGSGRYE-----------STLRRLA--TDVSQNVKFLGRLEYQDMINTL 270 (394)
T ss_dssp CSCGGGCHHHHHHHHHHHHHHST--TCEEEEECCCTTH-----------HHHHHHT--GGGGGGEEEEESCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCHHH-----------HHHHHHH--HCCCCEEEECCCCCHHHHHHHH
T ss_conf 44134588799999999886189--8699998686479-----------9999987--5545729990789978999999
Q ss_pred HHHHCCCCEEEECCCC-------CCCCHHHHHHHHCCCCEEECCCCCCCCCEEECCCEEEECCCCHHHHHHHHHHHHHCH
Q ss_conf 9821399299963998-------998689999998498799906667422012077459919999999999999998199
Q 001557 562 RLAAKTKGVFINPAFI-------EPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDK 634 (1054)
Q Consensus 562 ~~Aa~~~Dv~i~ps~~-------Egfgl~l~EAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~~~la~aI~~ll~d~ 634 (1054)
+.| |++|+||.. |+||++++|||++|+|||+++.|+..|++.++ +|+++++.|+++++++|.+++.++
T Consensus 271 ~~a----d~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 271 AAA----DIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDP 345 (394)
T ss_dssp HHC----SEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCH
T ss_pred HHC----CEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCC-CCEEECCCCHHHHHHHHHHHHHCH
T ss_conf 868----999945755566656555673999999759979993899737787468-856728999999999999998199
Q ss_pred HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999998-60997999999999999805209
Q 001557 635 QLWERCRQNGLKNI-HQFSWPEHCKSYLSRISSCKQRQ 671 (1054)
Q Consensus 635 ~~~~~~~~~a~~~v-~~fsw~~~a~~yl~~l~~l~~~~ 671 (1054)
+.++++++++++.+ ++|+|+.++++|+++|+++.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~ 383 (394)
T 3okp_A 346 IRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKL 383 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999874799999999999999720376
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=1.00 E-value=1 Score=314.63 Aligned_cols=368 Identities=15% Similarity=0.192 Sum_probs=266.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 29999830444456776789989887076899999999815999407999825767999897668763113444310000
Q 001557 166 LYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTENLM 245 (1054)
Q Consensus 166 mkIllis~h~~~r~~~~elgr~~dtGG~~~~v~eLa~aLa~~~Gv~~V~vit~~~~~p~~~~~~~~~~e~l~~~~~~~~~ 245 (1054)
|||++++.+.. + .||.++++.+|+++|+++ | |+|++++......
T Consensus 1 MkIl~i~~~~~-----------~-~gG~~~~~~~l~~~L~~~-G-~~V~v~~~~~~~~---------------------- 44 (374)
T 2iw1_A 1 MIVAFCLYKYF-----------P-FGGLQRDFMRIASTVAAR-G-HHVRVYTQSWEGD---------------------- 44 (374)
T ss_dssp -CEEEECSEEC-----------T-TCHHHHHHHHHHHHHHHT-T-CCEEEEESEECSC----------------------
T ss_pred CEEEEEEEECC-----------C-CCCHHHHHHHHHHHHHHC-C-CEEEEEECCCCCC----------------------
T ss_conf 96999972158-----------8-761635999999999967-9-8489996489887----------------------
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 13688899199981489987553324579974789999999999999998643159999964299975897049999997
Q 001557 246 QGLGESSGAYIIRIPFGPKDKYVQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADAGDAAALLS 325 (1054)
Q Consensus 246 ~~~~~~~gv~i~ri~~~~~~~~l~k~~l~~~l~~f~~~~l~~i~~~~~~L~~~~~~~~~~~pDIIh~h~~~~g~~a~~l~ 325 (1054)
..+|+.+++++...... . .....+...+.+.+.+ .+||+||+|...++..+....
T Consensus 45 ----~~~~~~v~~~~~~~~~~----------~----~~~~~~~~~l~~~i~~-------~~~Dvv~~~~~~~~~~~~~~~ 99 (374)
T 2iw1_A 45 ----CPKAFELIQVPVKSHTN----------H----GRNAEYYAWVQNHLKE-------HPADRVVGFNKMPGLDVYFAA 99 (374)
T ss_dssp ----CCTTCEEEECCCCCSSH----------H----HHHHHHHHHHHHHHHH-------SCCSEEEESSCCTTCSEEECC
T ss_pred ----CCCCCEEEEECCCCCCC----------H----HHHHHHHHHHHHHHHC-------CCCCEEEEECCCCCCEEEECC
T ss_conf ----88774799971686443----------0----1677899999999850-------699889996677885213001
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHCCCCHHH
Q ss_conf 259998999927983204899987177875646557679999999996430--279899569889999995406998478
Q 001557 326 GALNVPMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELSLD--ASEIVITSTRQEIEEQWRLYDGFDPVL 403 (1054)
Q Consensus 326 ~~~~iP~V~t~H~l~~~~~~~l~~~g~~~~~~i~~~~~~~rri~~E~~~l~--~Ad~Vi~~S~~~~~~~~~~y~~~~~~~ 403 (1054)
....+|.+++.|+.... ....+++..++ +...+. .+|.|+++|+...+.+...|+.. +
T Consensus 100 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~-- 159 (374)
T 2iw1_A 100 DVCYAEKVAQEKGFLYR---------------LTSRYRHYAAF--ERATFEQGKSTKLMMLTDKQIADFQKHYQTE-P-- 159 (374)
T ss_dssp SCCHHHHHHHHCCHHHH---------------TSHHHHHHHHH--HHHHHSTTCCCEEEESCHHHHHHHHHHHCCC-G--
T ss_pred CCCCCEEEEECCCCHHH---------------HCHHHHHHHHH--HHHHHHCCCCCEEEECCHHHHHHHHHHHCCC-H--
T ss_conf 56542133303562121---------------04778999999--9998642677579986989999999971897-1--
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 99999968226445788899689949998688744589998874433679999999831577742118999868999928
Q 001557 404 ERKLRARIKRGVSCHGRFMPRMVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALAR 483 (1054)
Q Consensus 404 ~~~l~~r~~~gv~~~g~~~~kv~vIPnGID~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~vgR 483 (1054)
.++.+||||+|...|.+... .+.....+.++...+++++|+++||
T Consensus 160 -------------------~~~~vi~ngv~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~G~ 204 (374)
T 2iw1_A 160 -------------------ERFQILPPGIYPDRKYSEQI----------------PNSREIYRQKNGIKEQQNLLLQVGS 204 (374)
T ss_dssp -------------------GGEEECCCCCCGGGSGGGSC----------------TTHHHHHHHHTTCCTTCEEEEEECS
T ss_pred -------------------HHEEEECCCCCHHHCCCCCC----------------HHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf -------------------10688569858776176442----------------3579999997289978729999646
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHH
Q ss_conf 9987899999999984402369983999-993399920220102999999999998819999788399999894999999
Q 001557 484 PDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYR 562 (1054)
Q Consensus 484 ld~~Kgi~~li~A~~~l~~~~~~~~l~L-IiG~~~~~~~~~~~~~~~~~~i~~li~~~~l~~~V~~~g~~~~~el~~ly~ 562 (1054)
+.+.||++.+++|+..+.... .+++.| |+|+++. ..+.+++.++++.++|.|.|+ .+++..+|+
T Consensus 205 ~~~~K~~~~li~a~~~l~~~~-~~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~ 269 (374)
T 2iw1_A 205 DFGRKGVDRSIEALASLPESL-RHNTLLFVVGQDKP------------RKFEALAEKLGVRSNVHFFSG--RNDVSELMA 269 (374)
T ss_dssp CTTTTTHHHHHHHHHTSCHHH-HHTEEEEEESSSCC------------HHHHHHHHHHTCGGGEEEESC--CSCHHHHHH
T ss_pred CHHHCCHHHHHHHHHHHHHCC-CCCEEEEEECCCCH------------HHHHHHHHHCCCCCCEEECCC--CCCHHHHHH
T ss_conf 410138899999999867604-88669999708987------------999999997398773797788--403899998
Q ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCEEECCCEEEEC-CCCHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 821399299963998998689999998498799906667422012077459919-9999999999999981999999999
Q 001557 563 LAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVD-PHDQQSIADALLKLVSDKQLWERCR 641 (1054)
Q Consensus 563 ~Aa~~~Dv~i~ps~~Egfgl~l~EAmA~G~PVIat~~Gg~~eii~~~~~Gllv~-p~d~~~la~aI~~ll~d~~~~~~~~ 641 (1054)
.| |++|+||..|+||++++|||+||+|||+++.||..|++.++.+|++++ |.|+++++++|.+++++++.+++++
T Consensus 270 ~a----d~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 345 (374)
T 2iw1_A 270 AA----DLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWA 345 (374)
T ss_dssp HC----SEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HC----CEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 46----88983542477556999999779988982699804443069831996799998999999999971949999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999860997999999999999805
Q 001557 642 QNGLKNIHQFSWPEHCKSYLSRISSCK 668 (1054)
Q Consensus 642 ~~a~~~v~~fsw~~~a~~yl~~l~~l~ 668 (1054)
+++++.++.|+|..+++.+.++++.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~l 372 (374)
T 2iw1_A 346 ENARHYADTQDLYSLPEKAADIITGGL 372 (374)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987538999999999999863
No 10
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=1.00 E-value=1 Score=312.47 Aligned_cols=361 Identities=18% Similarity=0.266 Sum_probs=268.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 98870768999999998159994079998257679998976687631134443100001368889919998148998755
Q 001557 188 SDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWTYAEPSEMLNRKNTENLMQGLGESSGAYIIRIPFGPKDKY 267 (1054)
Q Consensus 188 ~dtGG~~~~v~eLa~aLa~~~Gv~~V~vit~~~~~p~~~~~~~~~~e~l~~~~~~~~~~~~~~~~gv~i~ri~~~~~~~~ 267 (1054)
|..||.+.++.+|+++|+++ | |+|+++|.... . ... ...+++.+..++..... .
T Consensus 24 p~~GG~~~~~~~la~~L~~~-G-~~V~v~~~~~~--~-----~~~----------------~~~~~i~~~~~~~~~~~-~ 77 (394)
T 2jjm_A 24 PSVGGSGVVGTELGKQLAER-G-HEIHFITSGLP--F-----RLN----------------KVYPNIYFHEVTVNQYS-V 77 (394)
T ss_dssp C--CHHHHHHHHHHHHHHHT-T-CEEEEECSSCC---------------------------CCCTTEEEECCCCC-----
T ss_pred CCCCCHHHHHHHHHHHHHHC-C-CEEEEEECCCC--C-----CCC----------------CCCCCEEEEECCCCCCC-C
T ss_conf 89898789999999999968-9-87999968887--7-----620----------------03786289852566654-0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-HHHHHHHHCCC--CCCEEEEECCCCCCHH
Q ss_conf 33245799747899999999999999986431599999642999758970-49999997259--9989999279832048
Q 001557 268 VQKELLWPHIPEFVDAALTHIIQISKVLGEQVGSGQPIWPVAIHGHYADA-GDAAALLSGAL--NVPMVFTGHSLGRDKL 344 (1054)
Q Consensus 268 l~k~~l~~~l~~f~~~~l~~i~~~~~~L~~~~~~~~~~~pDIIh~h~~~~-g~~a~~l~~~~--~iP~V~t~H~l~~~~~ 344 (1054)
.. ...+. +.....+.+.+.+ .+|||||+|+... ...+.+..... ++|+|++.|+.....
T Consensus 78 ~~---~~~~~-------~~~~~~l~~~l~~-------~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~- 139 (394)
T 2jjm_A 78 FQ---YPPYD-------LALASKMAEVAQR-------ENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITV- 139 (394)
T ss_dssp CC---SCCHH-------HHHHHHHHHHHHH-------HTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHT-
T ss_pred CC---CCCCC-------HHHHHHHHHHHHH-------CCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-
T ss_conf 01---56520-------7999999999977-------699999972433777889998886267877799971575212-
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99987177875646557679999999996430279899569889999995406998478999999682264457888996
Q 001557 345 EQLLKQGRLSRDEINTTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIKRGVSCHGRFMPR 424 (1054)
Q Consensus 345 ~~l~~~g~~~~~~i~~~~~~~rri~~E~~~l~~Ad~Vi~~S~~~~~~~~~~y~~~~~~~~~~l~~r~~~gv~~~g~~~~k 424 (1054)
.+. . ..+ ++ .++..++.+|.|+++|+...+.+...+.. . .+
T Consensus 140 -----~~~-~-----~~~---~~--~~~~~~~~ad~ii~~s~~~~~~~~~~~~~-~----------------------~~ 180 (394)
T 2jjm_A 140 -----LGS-D-----PSL---NN--LIRFGIEQSDVVTAVSHSLINETHELVKP-N----------------------KD 180 (394)
T ss_dssp -----TTT-C-----TTT---HH--HHHHHHHHSSEEEESCHHHHHHHHHHTCC-S----------------------SC
T ss_pred -----CCC-C-----HHH---HH--HHHHHHHHCCEEEECCHHHHHHHHHHHCC-C----------------------CC
T ss_conf -----588-8-----778---89--99999861998999799999999985287-6----------------------56
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 89949998688744589998874433679999999831577742118999868999928998789999999998440236
Q 001557 425 MVVIPPGIEFHHIVRHNGDVDGEVERDEGSPASPDPPIWSEIMHFFSNPRKPMILALARPDPKKNITTLVKAFGECRPLR 504 (1054)
Q Consensus 425 v~vIPnGID~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~vgRld~~Kgi~~li~A~~~l~~~~ 504 (1054)
+.+||||+|...|.+.. ......++...++.++|+++||+.+.||++.+++|+..+...
T Consensus 181 ~~vi~ngv~~~~~~~~~--------------------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~- 239 (394)
T 2jjm_A 181 IQTVYNFIDERVYFKRD--------------------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE- 239 (394)
T ss_dssp EEECCCCCCTTTCCCCC--------------------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-
T ss_pred EEEECCCCCHHHCCCCC--------------------HHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-
T ss_conf 79955875687608863--------------------488998719998880899950466535889999999999853-
Q ss_pred CCCCEE-EEEECCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHH
Q ss_conf 998399-9993399920220102999999999998819999788399999894999999821399299963998998689
Q 001557 505 ELANLT-LIMGNRDDIDEMSGTNAALLLSILKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLT 583 (1054)
Q Consensus 505 ~~~~l~-LIiG~~~~~~~~~~~~~~~~~~i~~li~~~~l~~~V~~~g~~~~~el~~ly~~Aa~~~Dv~i~ps~~Egfgl~ 583 (1054)
.++. +|+|+++. ...+.+++.++++.++|.|.|+ .+++..+|+.| |++|+||..|+||++
T Consensus 240 --~~~~l~i~G~g~~-----------~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~a----dv~v~ps~~e~~~~~ 300 (394)
T 2jjm_A 240 --VDAKLLLVGDGPE-----------FCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMS----DLMLLLSEKESFGLV 300 (394)
T ss_dssp --SCCEEEEECCCTT-----------HHHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTC----SEEEECCSCCSCCHH
T ss_pred --CCCEEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEECC--HHHHHHHHHHC----CEEEECCCCCCCCHH
T ss_conf --7978999889657-----------9999999997399875999276--66599999867----899965666787268
Q ss_pred HHHHHHCCCCEEECCCCCCCCCEEECCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHH
Q ss_conf 99999849879990666742201207745991999999999999999819999999999999998-60997999999999
Q 001557 584 LIEAAAYGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLWERCRQNGLKNI-HQFSWPEHCKSYLS 662 (1054)
Q Consensus 584 l~EAmA~G~PVIat~~Gg~~eii~~~~~Gllv~p~d~~~la~aI~~ll~d~~~~~~~~~~a~~~v-~~fsw~~~a~~yl~ 662 (1054)
++|||+||+|||+++.|+..|++.++.+|+++++.|+++++++|.+++.+++.++++++++++.+ +.|+|+.++++|++
T Consensus 301 ~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 380 (394)
T 2jjm_A 301 LLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYET 380 (394)
T ss_dssp HHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999649988981589807776348853996899999999999999749799999999999999873799999999999
Q ss_pred HHHHHHHCC
Q ss_conf 999805209
Q 001557 663 RISSCKQRQ 671 (1054)
Q Consensus 663 ~l~~l~~~~ 671 (1054)
+|+++....
T Consensus 381 ~~~~~~~~~ 389 (394)
T 2jjm_A 381 IYYDVLRDD 389 (394)
T ss_dssp HHHHTC---
T ss_pred HHHHHHHHH
T ss_conf 999999666
Done!