Your job contains 1 sequence.
>001558
MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLN
NEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAG
VTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAM
VETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKT
LMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRIT
VIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKR
GLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPEN
INSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLT
HELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKR
VELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLA
YYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDY
FATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQD
PGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSV
LPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDF
HMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHS
FFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNT
MGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAES
LRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001558
(1053 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028040 - symbol:AT1G23230 "AT1G23230" species... 4019 0. 1
FB|FBgn0034795 - symbol:MED23 "Mediator complex subunit 2... 203 5.8e-12 1
ZFIN|ZDB-GENE-040724-82 - symbol:med23 "mediator complex ... 138 2.7e-07 2
RGD|1307671 - symbol:Med23 "mediator complex subunit 23" ... 140 7.2e-06 2
UNIPROTKB|Q5EB59 - symbol:Med23 "Mediator of RNA polymera... 140 7.2e-06 2
MGI|MGI:1917458 - symbol:Med23 "mediator complex subunit ... 137 1.2e-05 2
DICTYBASE|DDB_G0270434 - symbol:med23 "putative mediator ... 123 3.4e-05 3
UNIPROTKB|F1N8H3 - symbol:MED23 "Uncharacterized protein"... 129 0.00017 2
UNIPROTKB|E1BKW3 - symbol:MED23 "Uncharacterized protein"... 134 0.00040 3
>TAIR|locus:2028040 [details] [associations]
symbol:AT1G23230 "AT1G23230" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006487 "protein N-linked
glycosylation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006355
GO:GO:0006351 EMBL:AC005292 GO:GO:0016592 EMBL:AC002311
IPI:IPI00522318 IPI:IPI00542820 IPI:IPI00992463 PIR:F86366
RefSeq:NP_001185071.1 RefSeq:NP_173737.1 UniGene:At.41562
PRIDE:F4I4P3 EnsemblPlants:AT1G23230.1 GeneID:838932
KEGG:ath:AT1G23230 TAIR:At1g23230 eggNOG:NOG305557
InParanoid:Q9LR38 KO:K15166 OMA:DILAYFY ArrayExpress:F4I4P3
InterPro:IPR021629 Pfam:PF11573 Uniprot:F4I4P3
Length = 1615
Score = 4019 (1419.8 bits), Expect = 0., P = 0.
Identities = 777/1052 (73%), Positives = 887/1052 (84%)
Query: 1 MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLN 60
M ALNSD++KVETTRKILSFHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLN
Sbjct: 559 MTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLN 618
Query: 61 NEQLQKGKQIDEWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAG 120
NEQL KGKQIDEWWR SKG S+GMFWVVSYTMAQPACETV+NWLSSAG
Sbjct: 619 NEQLLKGKQIDEWWR--SKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAG 676
Query: 121 VTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAM 180
+ EL PG L PN+R+M+ +EV PLPMSLL+GFS+NLCLKLALQME+++F QVV SIAM
Sbjct: 677 MAEL-PG--LQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAM 733
Query: 181 VETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKT 240
VETYTRL+L++PHS+FRS FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KT
Sbjct: 734 VETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKT 793
Query: 241 LMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRIT 300
LMYD+TKIISALK KRGDHR+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT
Sbjct: 794 LMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRIT 853
Query: 301 VIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKR 360
++ LAI IKTRGIAD DH++YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKR
Sbjct: 854 IMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKR 913
Query: 361 GLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPEN 420
GL+IQAWQQAETTVINQCTQLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH EN
Sbjct: 914 GLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAEN 973
Query: 421 INSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLT 480
INS NL RVLRE SPEEVT+NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF T
Sbjct: 974 INSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWT 1033
Query: 481 HEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKR 540
HE HAL I ++LL +L R+K YC NRG PEHWL + +FKR
Sbjct: 1034 HEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKR 1093
Query: 541 VELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLA 600
ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPL++YRLIEN+AM+ AD +L +S FLA
Sbjct: 1094 NELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLA 1153
Query: 601 YYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDY 660
Y+PLRF+FVRDILAYFYGHLPGKL++R+L V DLSKIPFSESFPQ+IS + +CPPLDY
Sbjct: 1154 YHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDY 1213
Query: 661 FATLLLGLVNNVIPAL----NYNSKSGSTMD---ASLRAPHNKSPMTSQSGPSNVSEGRK 713
FA+LLL LVNNVIP L N +S+SGS D +S R PH K+P TSQ GP+N SEG+K
Sbjct: 1214 FASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQK 1273
Query: 714 EFYQNQDPGTYTQLVLETAVIEILSLPXXXXXXXXXXXXXXXXXXPTLIQTSNGPYGASN 773
FYQ QDPGTYTQLVLETAVIEILSLP TLIQ+ NG +GA+N
Sbjct: 1274 AFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAAN 1333
Query: 774 SVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLL 833
VGQGSVLPTSPSGGSTDS+ ASRST + GINT+SFVSRSGYTCQQLSCLLIQACGLLL
Sbjct: 1334 GVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLL 1393
Query: 834 AQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGN 893
AQLPPDFH+QLY+EA+R+ +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGN
Sbjct: 1394 AQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGN 1453
Query: 894 IVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKT 953
IVALLH+FFSNLPQEWL+GT+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKT
Sbjct: 1454 IVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKT 1513
Query: 954 LALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVL 1013
L LLL+ + DV+GK APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L L
Sbjct: 1514 LMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILAL 1573
Query: 1014 TGRAAESLRPEVQHLLSHLKPDVNSSIYAATH 1045
GRAAE+LRP+VQHLL+HLK + NSSIYAA H
Sbjct: 1574 IGRAAETLRPDVQHLLAHLKTNPNSSIYAAAH 1605
>FB|FBgn0034795 [details] [associations]
symbol:MED23 "Mediator complex subunit 23" species:7227
"Drosophila melanogaster" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0016592 "mediator complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] EMBL:AE013599 GO:GO:0006367
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG305557 KO:K15166
InterPro:IPR021629 Pfam:PF11573 GeneTree:ENSGT00390000010380
EMBL:BT029934 RefSeq:NP_611735.1 UniGene:Dm.2311 STRING:Q9W1X7
PaxDb:Q9W1X7 PRIDE:Q9W1X7 EnsemblMetazoa:FBtr0071903 GeneID:37639
KEGG:dme:Dmel_CG3695 CTD:9439 FlyBase:FBgn0034795 InParanoid:Q9W1X7
OrthoDB:EOG41JWSZ PhylomeDB:Q9W1X7 GenomeRNAi:37639 NextBio:804687
Uniprot:Q9W1X7
Length = 1439
Score = 203 (76.5 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 118/558 (21%), Positives = 233/558 (41%)
Query: 148 SLLTGFSLNLCLKLALQM-EDSIFGGQVVASIAMVETYTRLMLLAP-HSLFRSLFSHLAQ 205
SL ++L QM + + GQV A+ A++ETY RL++ SL + L+Q
Sbjct: 534 SLTVHSKMSLIHSFVTQMLKQAQSKGQVPAA-ALLETYARLLVYTEIESL--GIKGFLSQ 590
Query: 206 RNPSLLAKVGVTPL--VLEIVNYRL--LPLYRYQGKTKTLMYDITKIISALKVKRG---D 258
P++ L ++E+ +YRL +P + Y+ + +L++ ++ + K++ +
Sbjct: 591 LMPTVFKNHAWAMLHTLMEMFSYRLHHVPTH-YRVQLLSLLHSLSSVPQTNKMQLNLCFE 649
Query: 259 HRVLRLAENLCMNLILSQRD-FFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADAD 317
LRL ++ Q +F+ K G ++ +E LNR+ ++ LA + G D +
Sbjct: 650 STALRLITSIGSAEFQPQFSRYFNDKSPGAVASNESEELNRVLILTLARSMHVHGGGD-E 708
Query: 318 HVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQ 377
+ + L I+ + H+W +L FP L + + + QQ + V +
Sbjct: 709 MQGWCKDFLSNIIQHTPHSWPMHSLACFPPALNEYFT----QNNQPPENKQQLKKAVEEE 764
Query: 378 CTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEE 437
S + + + +L + + +LC I+ + ENI+ ++L S
Sbjct: 765 YRTWTSMTNENDIIAHFLRPT--TNPLFLCLLFKIIWE--TENISPV-AYKILEGISARA 819
Query: 438 VTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANIS-----FFVLTHEXXXXXXXXXX 492
+++++ D L+ E+ +D + K I+ F V+T +
Sbjct: 820 LSTHLRKFCDYLV----AEVASSSDGRDFIHKCVDTINNMIWKFNVVTIDRVVLCLALRT 875
Query: 493 XXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHL 551
L I + LL EL+ RV+ +C + P +HW S K + +
Sbjct: 876 HEGNEAQVCFLIIQLLLLKASELRNRVQEFCKDNNP-DHWKQSNWQDKHLSFHQKYPEKF 934
Query: 552 SWKER-----YPTFFDDIAARLLPVIPLIVYRLIE---NDAMDSADRVLATYSSFLAYYP 603
+ E P +F ++ R LPV+ ++V+R IE + +L S ++
Sbjct: 935 ALDESASQIPLPVYFSNVCLRFLPVLDVVVHRFIELTITNVHQILGFILDHLSILYKFHD 994
Query: 604 LRFSFVRDILAYFYGHL---PG---KLIVRILNVFDLSKIP---FSESFPQHISSSNPVM 654
+++ + L Y+ L P KL+ I + F + P SE + ++ S + +
Sbjct: 995 RPITYLYNTLHYYERILRDRPALKKKLVGAITSAFSEIRPPNWSVSEPYKVYLQSQDSLW 1054
Query: 655 CPPLDYFATLLLGLVNNV 672
P L Y+ +L+ L + +
Sbjct: 1055 TPELSYYMSLIRRLADTI 1072
>ZFIN|ZDB-GENE-040724-82 [details] [associations]
symbol:med23 "mediator complex subunit 23"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] ZFIN:ZDB-GENE-040724-82 InterPro:IPR021629
Pfam:PF11573 GeneTree:ENSGT00390000010380 HOVERGEN:HBG051122
HOGENOM:HOG000043810 EMBL:BX072559 IPI:IPI00864380 UniGene:Dr.34224
Ensembl:ENSDART00000141595 Uniprot:B8A4G4
Length = 1387
Score = 138 (53.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 94/466 (20%), Positives = 187/466 (40%)
Query: 132 PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-GQVVASIAM----VETYTR 186
P M V PLPM+LL +++ + L + + +S+A+ VETY+R
Sbjct: 521 PGTNCMASGSVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSLALAPALVETYSR 580
Query: 187 LML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRLLPLYRYQGKTKTLMY 243
L++ + SL + ++Q P++ G+ +LE+ +YR+ + Q + +
Sbjct: 581 LLVYMEIESL--GIKGFISQLLPNVFKSHAWGILHTLLEMFSYRM---HHIQPHYRVQL- 634
Query: 244 DITKIISALKVKRGDHRVLRLA-ENLCMNLILS------QRDFFSLKREGKG--STEFTE 294
++ + S V + + L L E+ + LI + Q F + K S E +E
Sbjct: 635 -LSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAE-SE 692
Query: 295 TLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEKTLRYFPSLLRD 351
LNR ++ LA T +D + + + +L+ IM + H W+ TL FP+ L+
Sbjct: 693 ELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMNFTPHNWASHTLSCFPAPLQ- 751
Query: 352 ALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAW 411
+ + ++ + V + + S + + + + P +LC W
Sbjct: 752 ---AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSMQGSPP--LFLCL-LW 805
Query: 412 ILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKAC 471
++ ++IN RVL + +++ T D L++ G L +
Sbjct: 806 KMLL-ETDHINQIGF-RVLERIGARALVAHVRTFADFLVYEFSTSAG-GQQLNKCIEILN 862
Query: 472 ANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPE 530
+ + ++T + I + LL + + RV + + PE
Sbjct: 863 DMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF-VKENAPE 921
Query: 531 HWLYSGLFKRVELQKALGNHLSWKERYPT--FFDDIAARLLPVIPL 574
HWL S + H+++ ++YP +F+ +A ++ P I L
Sbjct: 922 HWLQSDWHTK---------HMTYHKKYPEKLYFEGLAEQVNPPIQL 958
Score = 128 (50.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 93/474 (19%), Positives = 187/474 (39%)
Query: 179 AMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRLLPLYRYQ 235
A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR+ + Q
Sbjct: 573 ALVETYSRLLVYMEIESL--GIKGFISQLLPNVFKSHAWGILHTLLEMFSYRM---HHIQ 627
Query: 236 GKTKTLMYDITKIISALKVKRGDHRVLRLA-ENLCMNLILS------QRDFFSLKREGKG 288
+ + ++ + S V + + L L E+ + LI + Q F + K
Sbjct: 628 PHYRVQL--LSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKT 685
Query: 289 --STEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEKTLR 343
S E +E LNR ++ LA T +D + + + +L+ IM + H W+ TL
Sbjct: 686 VLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMNFTPHNWASHTLS 744
Query: 344 YFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHR 403
FP+ L+ + + ++ + V + + S + + + + P
Sbjct: 745 CFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSMQGSPP-- 798
Query: 404 QYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSL 463
+LC W ++ ++IN RVL + +++ T D L++ G L
Sbjct: 799 LFLCL-LWKMLL-ETDHINQIGF-RVLERIGARALVAHVRTFADFLVYEFSTSAG-GQQL 854
Query: 464 QDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVKLY 522
+ + + ++T + I + LL + + RV +
Sbjct: 855 NKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF 914
Query: 523 CMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK-------------ERY-PTFFDDIAAR 567
+ PEHWL S K + K L ++ +Y P +F ++ R
Sbjct: 915 -VKENAPEHWLQSDWHTKHMTYHKKYPEKLYFEGLAEQVNPPIQLQSQYLPIYFGNVCLR 973
Query: 568 LLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 620
LPV ++++R +E S + +L ++ +++ + L Y+ HL
Sbjct: 974 FLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYERHL 1027
Score = 75 (31.5 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 50/213 (23%), Positives = 91/213 (42%)
Query: 826 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQD 885
+ A GL++ LP + + L+ +I + L+ G LG + LLD T Q
Sbjct: 1157 MNAIGLVITALPEPYWIVLHDRIVSVISSAV-LSSGSDWLG-----YPFQLLDFTACHQS 1210
Query: 886 NTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLLPR 942
+ ++AL H+ + S++ Q L + + L+PI L V+ ++GP L R
Sbjct: 1211 YSEMHCSYVLALAHAVWHHSSIGQLSLI-PKFLSEVLKPIVKTEFQLLYVYHLVGPFLQR 1269
Query: 943 LVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQA 1002
T + + M +++ A ++ + DFL+H+ Y G V
Sbjct: 1270 FQQERTRCMLEIGVAFYEMLQAVDQHSNHLAYMDP-----ICDFLYHI-KYMFTGDSV-- 1321
Query: 1003 SSKPRPEVLVLTGRAAESLRPE-VQHLLSHLKP 1034
K + E ++ + R A LR + H+ S ++P
Sbjct: 1322 --KDQVERIICSLRPAMRLRLRFITHI-SKMEP 1351
>RGD|1307671 [details] [associations]
symbol:Med23 "mediator complex subunit 23" species:10116 "Rattus
norvegicus" [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0016592 "mediator complex"
evidence=IEA;ISO] RGD:1307671 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 eggNOG:NOG305557 InterPro:IPR021629 Pfam:PF11573
GeneTree:ENSGT00390000010380 HOVERGEN:HBG051122
HOGENOM:HOG000043810 EMBL:AABR03000314 EMBL:BC090022
IPI:IPI00368254 UniGene:Rn.6604 STRING:Q5EB59 PhosphoSite:Q5EB59
PRIDE:Q5EB59 Ensembl:ENSRNOT00000032424 InParanoid:Q5EB59
NextBio:660982 ArrayExpress:Q5EB59 Genevestigator:Q5EB59
Uniprot:Q5EB59
Length = 1367
Score = 140 (54.3 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 88/465 (18%), Positives = 187/465 (40%)
Query: 132 PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-----GQVVASIAMVETYTR 186
P + V PLPM+LL +++ + L + + V + A+VETY+R
Sbjct: 510 PGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHTKSSVALAPALVETYSR 569
Query: 187 LML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRLLPLYRYQGKTKTLMY 243
L++ + SL + ++Q P++ G+ +LE+ ++R+ + Q + +
Sbjct: 570 LLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSHRM---HHIQPHYRVQLL 624
Query: 244 DITKIISALKVKRGDHRVLRLAENLCMNLILS------QRDFFSLKREGKG--STEFTET 295
++A+ + +++ E+ + LI + Q F + K S E +E
Sbjct: 625 SHLHTLAAV-AQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAE-SEE 682
Query: 296 LNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDA 352
LNR ++ LA T +D + + + +L+ IM + H W+ TL FP+ L+
Sbjct: 683 LNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMTFTPHNWASHTLSCFPAPLQ-- 740
Query: 353 LIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWI 412
+ + ++ + V + + S + + + + FP +LC W
Sbjct: 741 --AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQFSMQGFPP--LFLCL-LWK 795
Query: 413 LMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACA 472
++ ++I+ +VL + +++ T D L++ G L +
Sbjct: 796 MLL-ETDHISQIGY-KVLERIGARALVAHVRTFADFLVYEFSTSAG-GQQLNKCIEILND 852
Query: 473 NI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPEH 531
+ + ++T + I + LL + + RV + + PEH
Sbjct: 853 MVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF-VKENSPEH 911
Query: 532 WLYSGLFKRVELQKALGNHLSWKERYPT--FFDDIAARLLPVIPL 574
WL S + H+S+ ++YP +F+ +A ++ P +P+
Sbjct: 912 WLQSDWHTK---------HMSYHKKYPEKLYFEGLAEQVDPPVPI 947
Score = 59 (25.8 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 50/227 (22%), Positives = 88/227 (38%)
Query: 826 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYA--LLDPTWAA 883
+ A GL++ LP + + L+ +I S SL VGY L D T
Sbjct: 1146 MNAIGLIITALPEPYWIVLHDRIVSVISSS--------SLTSETEWVGYPFRLFDFTACH 1197
Query: 884 QDNTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLL 940
Q + + +AL H+ + S++ Q L + + L P+ L V+ ++GP L
Sbjct: 1198 QSYSEMSCSYTLALAHAVWHHSSIGQLSLI-PKFLTEVLLPVVKTEFQLLYVYHLVGPFL 1256
Query: 941 PRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPV 1000
R T + + M + + + + DFL+H+ Y G V
Sbjct: 1257 QRFQQERTRCMIEIGVAFYDM-----LLNVDQCSTHLNYMDPICDFLYHM-KYMFTGDSV 1310
Query: 1001 QASSKPRPEVLVLTGRAAESLRPE-VQHLLSHLKPDVNSSIYAATHP 1046
K + E ++ + A LR + H+ S ++P V ++ P
Sbjct: 1311 ----KEQVEKIICNLKPALKLRLRFITHI-SKMEPAVPPQALSSGSP 1352
>UNIPROTKB|Q5EB59 [details] [associations]
symbol:Med23 "Mediator of RNA polymerase II transcription
subunit 23" species:10116 "Rattus norvegicus" [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] RGD:1307671
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 eggNOG:NOG305557
InterPro:IPR021629 Pfam:PF11573 GeneTree:ENSGT00390000010380
HOVERGEN:HBG051122 HOGENOM:HOG000043810 EMBL:AABR03000314
EMBL:BC090022 IPI:IPI00368254 UniGene:Rn.6604 STRING:Q5EB59
PhosphoSite:Q5EB59 PRIDE:Q5EB59 Ensembl:ENSRNOT00000032424
InParanoid:Q5EB59 NextBio:660982 ArrayExpress:Q5EB59
Genevestigator:Q5EB59 Uniprot:Q5EB59
Length = 1367
Score = 140 (54.3 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 88/465 (18%), Positives = 187/465 (40%)
Query: 132 PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-----GQVVASIAMVETYTR 186
P + V PLPM+LL +++ + L + + V + A+VETY+R
Sbjct: 510 PGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHTKSSVALAPALVETYSR 569
Query: 187 LML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRLLPLYRYQGKTKTLMY 243
L++ + SL + ++Q P++ G+ +LE+ ++R+ + Q + +
Sbjct: 570 LLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSHRM---HHIQPHYRVQLL 624
Query: 244 DITKIISALKVKRGDHRVLRLAENLCMNLILS------QRDFFSLKREGKG--STEFTET 295
++A+ + +++ E+ + LI + Q F + K S E +E
Sbjct: 625 SHLHTLAAV-AQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAE-SEE 682
Query: 296 LNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDA 352
LNR ++ LA T +D + + + +L+ IM + H W+ TL FP+ L+
Sbjct: 683 LNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMTFTPHNWASHTLSCFPAPLQ-- 740
Query: 353 LIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWI 412
+ + ++ + V + + S + + + + FP +LC W
Sbjct: 741 --AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQFSMQGFPP--LFLCL-LWK 795
Query: 413 LMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACA 472
++ ++I+ +VL + +++ T D L++ G L +
Sbjct: 796 MLL-ETDHISQIGY-KVLERIGARALVAHVRTFADFLVYEFSTSAG-GQQLNKCIEILND 852
Query: 473 NI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPEH 531
+ + ++T + I + LL + + RV + + PEH
Sbjct: 853 MVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF-VKENSPEH 911
Query: 532 WLYSGLFKRVELQKALGNHLSWKERYPT--FFDDIAARLLPVIPL 574
WL S + H+S+ ++YP +F+ +A ++ P +P+
Sbjct: 912 WLQSDWHTK---------HMSYHKKYPEKLYFEGLAEQVDPPVPI 947
Score = 59 (25.8 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 50/227 (22%), Positives = 88/227 (38%)
Query: 826 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYA--LLDPTWAA 883
+ A GL++ LP + + L+ +I S SL VGY L D T
Sbjct: 1146 MNAIGLIITALPEPYWIVLHDRIVSVISSS--------SLTSETEWVGYPFRLFDFTACH 1197
Query: 884 QDNTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLL 940
Q + + +AL H+ + S++ Q L + + L P+ L V+ ++GP L
Sbjct: 1198 QSYSEMSCSYTLALAHAVWHHSSIGQLSLI-PKFLTEVLLPVVKTEFQLLYVYHLVGPFL 1256
Query: 941 PRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPV 1000
R T + + M + + + + DFL+H+ Y G V
Sbjct: 1257 QRFQQERTRCMIEIGVAFYDM-----LLNVDQCSTHLNYMDPICDFLYHM-KYMFTGDSV 1310
Query: 1001 QASSKPRPEVLVLTGRAAESLRPE-VQHLLSHLKPDVNSSIYAATHP 1046
K + E ++ + A LR + H+ S ++P V ++ P
Sbjct: 1311 ----KEQVEKIICNLKPALKLRLRFITHI-SKMEPAVPPQALSSGSP 1352
>MGI|MGI:1917458 [details] [associations]
symbol:Med23 "mediator complex subunit 23" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0016592 "mediator complex" evidence=IDA] MGI:MGI:1917458
GO:GO:0006355 GO:GO:0006351 Reactome:REACT_127416
Reactome:REACT_27166 GO:GO:0016592 eggNOG:NOG305557 KO:K15166
InterPro:IPR021629 Pfam:PF11573 CTD:9439 HOVERGEN:HBG051122
EMBL:AF507918 EMBL:AK129312 EMBL:AK013854 EMBL:AK028545
EMBL:BC005508 EMBL:BC050916 IPI:IPI00606087 IPI:IPI00761816
IPI:IPI00988679 RefSeq:NP_001159888.1 RefSeq:NP_081623.3
UniGene:Mm.28020 ProteinModelPortal:Q80YQ2 DIP:DIP-59234N
IntAct:Q80YQ2 STRING:Q80YQ2 PhosphoSite:Q80YQ2 PaxDb:Q80YQ2
PRIDE:Q80YQ2 DNASU:70208 GeneID:70208 KEGG:mmu:70208
UCSC:uc007ere.2 UCSC:uc007erf.2 UCSC:uc011xbu.1
HOGENOM:HOG000043810 OrthoDB:EOG4J9MZ1 NextBio:331172 Bgee:Q80YQ2
CleanEx:MM_MED23 Genevestigator:Q80YQ2 Uniprot:Q80YQ2
Length = 1367
Score = 137 (53.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 88/465 (18%), Positives = 187/465 (40%)
Query: 132 PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-----GQVVASIAMVETYTR 186
P + V PLPM+LL +++ + L + + V + A+VETY+R
Sbjct: 510 PGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHTKSSVALAPALVETYSR 569
Query: 187 LML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRLLPLYRYQGKTKTLMY 243
L++ + SL + ++Q P++ G+ +LE+ ++R+ + Q + +
Sbjct: 570 LLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSHRM---HHIQPHYRVQLL 624
Query: 244 DITKIISALKVKRGDHRVLRLAENLCMNLILS------QRDFFSLKREGKG--STEFTET 295
++A+ + +++ E+ + LI + Q F + K S E +E
Sbjct: 625 SHLHTLAAV-AQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAE-SEE 682
Query: 296 LNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDA 352
LNR ++ LA T +D + + + +L+ IM + H W+ TL FP+ L+
Sbjct: 683 LNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMNFTPHNWASHTLSCFPAPLQ-- 740
Query: 353 LIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWI 412
+ + ++ + V + + S + + + + FP +LC W
Sbjct: 741 --AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQFSVQGFPP--LFLCL-LWK 795
Query: 413 LMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACA 472
++ ++I+ +VL + +++ T D L++ G L +
Sbjct: 796 MLL-ETDHISQIGY-KVLERIGARALVAHVRTFADFLVYEFSTSAG-GQQLNKCIEILND 852
Query: 473 NI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPEH 531
+ + ++T + I + LL + + RV + + PEH
Sbjct: 853 MVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF-VKENSPEH 911
Query: 532 WLYSGLFKRVELQKALGNHLSWKERYPT--FFDDIAARLLPVIPL 574
WL S + H+S+ ++YP +F+ +A ++ P +P+
Sbjct: 912 WLQSDWHTK---------HMSYHKKYPEKLYFEGLAEQVDPPVPI 947
Score = 60 (26.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 49/217 (22%), Positives = 85/217 (39%)
Query: 826 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYA--LLDPTWAA 883
+ A GL++ LP + + L+ +I S SL VGY L D T
Sbjct: 1146 MNAIGLIITALPEPYWIVLHDRIVNVISSS--------SLTSETEWVGYPFRLFDFTACH 1197
Query: 884 QDNTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLL 940
Q + + +AL H+ + S++ Q L + + L P+ L V+ ++GP L
Sbjct: 1198 QSYSEMSCSYTLALAHAVWHHSSIGQLSLI-PKFLTEALLPVVKTEFQLLYVYHLVGPFL 1256
Query: 941 PRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPV 1000
R T + + M + + + + DFL+H+ Y G V
Sbjct: 1257 QRFQQERTRCMIEIGVAFYDM-----LLNVDQCSTHLNYMDPICDFLYHM-KYMFTGDSV 1310
Query: 1001 QASSKPRPEVLVLTGRAAESLRPE-VQHLLSHLKPDV 1036
K + E ++ + A LR + H+ S ++P V
Sbjct: 1311 ----KEQVEKIICNLKPALKLRLRFITHI-SKMEPAV 1342
>DICTYBASE|DDB_G0270434 [details] [associations]
symbol:med23 "putative mediator complex subunit 23"
species:44689 "Dictyostelium discoideum" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0030587 "sorocarp
development" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0270434 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0030587 GO:GO:0005667
InterPro:IPR021629 Pfam:PF11573 RefSeq:XP_646801.1
EnsemblProtists:DDB0266935 GeneID:8617774 KEGG:ddi:DDB_G0270434
eggNOG:KOG1883 OMA:LYCPLER Uniprot:Q55BN0
Length = 1662
Score = 123 (48.4 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 54/221 (24%), Positives = 107/221 (48%)
Query: 137 MVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLF 196
+V ++ P+ +L SL KL + + +V S +E Y R + P +
Sbjct: 684 VVTGKIKPVSNLILLNLSLRCRRKLIQESVLLLLDKEVPISPGFLEDYCRTVHYTPGPVS 743
Query: 197 RSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLM---YDIT--KIISA 251
LFS+ + + LA + V+E V++RLL + + + L+ DI K I
Sbjct: 744 PFLFSYFKKFHR--LAPIHA---VIESVSHRLLKVLKSNKELAVLLRALQDIQTQKPIQN 798
Query: 252 LKVKRG-DHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKT 310
+++ R D+ +L+ + +L ++LI ++ + SL G F NR + ++A +IK
Sbjct: 799 IQLSRSIDYLLLKASISLPVDLISAKEIWKSLDL-GL----FN---NRRLITSIARLIKL 850
Query: 311 RGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRD 351
+GI D + + + +E ++ + +S+ TL +FP +L++
Sbjct: 851 KGIQDFNRISDVPVFIENCFKSNPYCFSKSTLEFFPDILKN 891
Score = 83 (34.3 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 25/101 (24%), Positives = 51/101 (50%)
Query: 558 PTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYP-LRFSFVRDILAYF 616
P ++ + +RL+P++ +I+ + IE + D ++ + ++ YY + + ++D L Y+
Sbjct: 1151 PIYYSNSISRLMPIVEIIISKSIELNNGDLFEKTINHFNIPYHYYQDEKETTIKDTLIYY 1210
Query: 617 YGHLPGKL-------IVRILNVFDLSKIPFSESFPQHISSS 650
Y KL +++LN D+ FS F Q + SS
Sbjct: 1211 YDSQLFKLNPELKLLFLKLLNQSDIDN-RFSNIFNQFLKSS 1250
Score = 61 (26.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 30/143 (20%), Positives = 58/143 (40%)
Query: 560 FFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYF--- 616
++D +L P + L+ +L+ +D+ R ++ FL + + AYF
Sbjct: 1210 YYDSQLFKLNPELKLLFLKLLNQSDIDN--RFSNIFNQFLKSSRIEDITMVGSTAYFNDL 1267
Query: 617 YGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLL------GLVN 670
L + + NVFD +F I SNP+ + +LL + N
Sbjct: 1268 ISPLAEMMDLTNQNVFDTFSFKTENTFSS-IDISNPLELKLNNIILEILLLPLDSNWIAN 1326
Query: 671 NVIPALNYNSKSGSTMDASLRAP 693
++ LNY++++ + D + P
Sbjct: 1327 GLVSLLNYSNRNKNFSDRKIDPP 1349
Score = 37 (18.1 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 699 MTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP 740
+T+Q+ S + + + D +L L ++EIL LP
Sbjct: 1277 LTNQNVFDTFSFKTENTFSSIDISNPLELKLNNIILEILLLP 1318
>UNIPROTKB|F1N8H3 [details] [associations]
symbol:MED23 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
GO:GO:0006355 GO:GO:0005667 GO:GO:0016592 InterPro:IPR021629
Pfam:PF11573 GeneTree:ENSGT00390000010380 OMA:QHKQRCP
EMBL:AADN02049814 EMBL:AADN02049813 IPI:IPI00589763
Ensembl:ENSGALT00000004401 Uniprot:F1N8H3
Length = 1392
Score = 129 (50.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 109/539 (20%), Positives = 214/539 (39%)
Query: 116 LSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVV 175
+S G + GS P L+ V+ MSL+ + + +KLA + S V
Sbjct: 528 ISLPGTNCMASGSITPLPMNLLDSLTVHA-KMSLIHSIATRV-IKLA-HAKSS-----VA 579
Query: 176 ASIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRL---L 229
+ A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR+
Sbjct: 580 LAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQ 637
Query: 230 PLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILS------QRDFFSLK 283
P YR Q L+ + + A +R +++ E+ + LI + Q F
Sbjct: 638 PHYRVQ-----LLSHLHSL--AAVPQRNQNQLHLCVESTALRLITALGSSEVQPQFTRFL 690
Query: 284 REGKG--STEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWS 338
+ K S E +E LNR ++ LA T +D + + + +L+ IM+ + H W+
Sbjct: 691 SDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWA 749
Query: 339 EKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHS 398
TL FP+ L+ + + ++ + V + + S + + + +
Sbjct: 750 SHTLSCFPAPLQVFF----KQNNVPQESRFNLKKNVEEEYRKWKSMTNENEIITRFSVQG 805
Query: 399 FPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQ 458
P +LC W ++ ++IN RVL + +++ T D L++
Sbjct: 806 SPP--LFLCL-LWKMLL-ETDHINQIGY-RVLERIGARALVAHVRTFADFLVYEFSTSAG 860
Query: 459 RGHSLQDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQ 517
G L + + + ++T + I + LL + +
Sbjct: 861 -GQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRN 919
Query: 518 RVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK-------------ERY-PTFFD 562
RV + + PEHWL + K + K L ++ +Y P +F
Sbjct: 920 RVSDF-VKENSPEHWLQNDWHTKHMSYHKKYPEKLYFEGLAEQVNPPVQIQPQYLPIYFG 978
Query: 563 DIAARLLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 620
++ R LPV ++++R +E S + +L ++ +++ + L Y+ HL
Sbjct: 979 NVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYERHL 1037
Score = 57 (25.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 55/220 (25%), Positives = 88/220 (40%)
Query: 826 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYA--LLDPTWAA 883
+ A GL++ LP + + L+ +I SL VGY L D T
Sbjct: 1168 MNAIGLIITALPEPYWIVLHDHIVSVINSP--------SLTSETEWVGYPFQLFDFTACH 1219
Query: 884 QDNTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLL 940
Q + + +AL H+ + S++ Q L + + L PI L V+ ++GP L
Sbjct: 1220 QSYSEMSCSYTLALAHAVWHHSSIGQLSLI-PKFLTEVLIPIVKTEFQLLYVYHLVGPFL 1278
Query: 941 PRLVNAHT--LFNKTLA---LLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEG 995
R T + +A +LLN D Y + P+ DFL+H+ Y
Sbjct: 1279 QRFQQERTRCMIEIGVAFYEMLLNA--DQYSSHLNYMDPI--------CDFLYHM-KYMF 1327
Query: 996 QGGPVQASSKPRPEVLVLTGRAAESLRPE-VQHLLSHLKP 1034
G V K + E ++ R A LR + H+ S ++P
Sbjct: 1328 TGDSV----KDQVEKIICNLRPALKLRLRFITHI-SKMEP 1362
>UNIPROTKB|E1BKW3 [details] [associations]
symbol:MED23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016592 "mediator complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
GO:GO:0006355 GO:GO:0005667 GO:GO:0016592 InterPro:IPR021629
Pfam:PF11573 GeneTree:ENSGT00390000010380 EMBL:DAAA02026640
EMBL:DAAA02026641 EMBL:DAAA02026642 IPI:IPI00720471
Ensembl:ENSBTAT00000046332 OMA:QHKQRCP Uniprot:E1BKW3
Length = 1368
Score = 134 (52.2 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 91/466 (19%), Positives = 185/466 (39%)
Query: 132 PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-----GQVVASIAMVETYTR 186
P + + PLPM+LL +++ + L + + V + A+VETY+R
Sbjct: 510 PGTSCLASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSVALAPALVETYSR 569
Query: 187 LML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRL---LPLYRYQGKTKT 240
L++ + SL + ++Q P++ G+ +LE+ +YR+ P YR Q
Sbjct: 570 LLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQ----- 622
Query: 241 LMYDITKIISALKVKRGD-H-----RVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTE 294
L+ + + + + + H LRL L + + Q F + S E +E
Sbjct: 623 LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLSDPKTVLSAE-SE 681
Query: 295 TLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEKTLRYFPSLLRD 351
LNR ++ LA T +D + + + +L+ IM+ + H W+ TL FP L+
Sbjct: 682 ELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWASHTLSCFPGPLQ- 740
Query: 352 ALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAW 411
+ + ++ + V + + S + + + + + P +LC W
Sbjct: 741 ---AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSAQRSPP--LFLCL-LW 794
Query: 412 ILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKAC 471
++ ++IN RVL + ++ T D L++ G L +
Sbjct: 795 KMLL-ETDHINQIGY-RVLERIGARALVVHVRTFADFLVYEFSTSAG-GQQLNKCIEILN 851
Query: 472 ANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPE 530
+ + ++T + I + LL + + RV + + PE
Sbjct: 852 DMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF-VKENSPE 910
Query: 531 HWLYSGLFKRVELQKALGNHLSWKERYPT--FFDDIAARLLPVIPL 574
HWL + + H+++ ++YP +F+ +A ++ P +P+
Sbjct: 911 HWLQNDWHTK---------HMNYHKKYPEKLYFEGLAEQVDPPVPI 947
Score = 54 (24.1 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 33/128 (25%), Positives = 52/128 (40%)
Query: 826 IQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYA--LLDPTWAA 883
+ A GL++ LP + + L+ RI+ SL VGY L D T
Sbjct: 1146 MNAIGLIITALPEPYWIVLH---DRIVS-----VISSPSLTSETEWVGYPFRLFDFTACH 1197
Query: 884 QDNTSTAIGNIVALLHSFF--SNLPQEWLEGTHVIIKHLRPITSVAM-LRIVFRIMGPLL 940
Q + + +AL H+ + S++ Q L + + L PI L V+ ++GP L
Sbjct: 1198 QSYSEMSCSYTLALAHAVWHHSSIGQLSLI-PKFLTEVLLPIVKTEFQLLYVYHLVGPFL 1256
Query: 941 PRLVNAHT 948
R T
Sbjct: 1257 QRFQQERT 1264
Score = 41 (19.5 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 1019 ESLRPEVQHLLSHLKPDVNSSIYAATH 1045
+S++ +V+ ++ +LKP + + TH
Sbjct: 1308 DSVKEQVEKIICNLKPALKLRLRFITH 1334
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1053 1005 0.00079 123 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 628 (67 KB)
Total size of DFA: 471 KB (2221 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 81.93u 0.16s 82.09t Elapsed: 00:00:04
Total cpu time: 81.94u 0.16s 82.10t Elapsed: 00:00:04
Start: Tue May 21 02:59:38 2013 End: Tue May 21 02:59:42 2013