BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001558
(1053 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4I4P3|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis
thaliana GN=MED23 PE=1 SV=1
Length = 1615
Score = 1697 bits (4395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/1052 (77%), Positives = 931/1052 (88%), Gaps = 12/1052 (1%)
Query: 1 MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLN 60
M ALNSD++KVETTRKILSFHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLN
Sbjct: 559 MTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLN 618
Query: 61 NEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAG 120
NEQL KGKQIDEWWR SKG+RMMDYMNMDDRS+GMFWVVSYTMAQPACETV+NWLSSAG
Sbjct: 619 NEQLLKGKQIDEWWR--SKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAG 676
Query: 121 VTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAM 180
+ EL PG L PN+R+M+ +EV PLPMSLL+GFS+NLCLKLALQME+++F QVV SIAM
Sbjct: 677 MAEL-PG--LQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAM 733
Query: 181 VETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKT 240
VETYTRL+L++PHS+FRS FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KT
Sbjct: 734 VETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKT 793
Query: 241 LMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRIT 300
LMYD+TKIISALK KRGDHR+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT
Sbjct: 794 LMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRIT 853
Query: 301 VIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKR 360
++ LAI IKTRGIAD DH++YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKR
Sbjct: 854 IMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKR 913
Query: 361 GLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPEN 420
GL+IQAWQQAETTVINQCTQLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH EN
Sbjct: 914 GLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAEN 973
Query: 421 INSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLT 480
INS NL RVLRE SPEEVT+NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF T
Sbjct: 974 INSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWT 1033
Query: 481 HELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKR 540
HE+LPLDI LLALIDRDDDPHAL I ++LL +L R+K YC NRG PEHWL + +FKR
Sbjct: 1034 HEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKR 1093
Query: 541 VELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLA 600
ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPL++YRLIEN+AM+ AD +L +S FLA
Sbjct: 1094 NELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLA 1153
Query: 601 YYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDY 660
Y+PLRF+FVRDILAYFYGHLPGKL++R+L V DLSKIPFSESFPQ+IS + +CPPLDY
Sbjct: 1154 YHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDY 1213
Query: 661 FATLLLGLVNNVIPALNYNSKS-------GSTMDASLRAPHNKSPMTSQSGPSNVSEGRK 713
FA+LLL LVNNVIP L+ +S +++S R PH K+P TSQ GP+N SEG+K
Sbjct: 1214 FASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQK 1273
Query: 714 EFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASN 773
FYQ QDPGTYTQLVLETAVIEILSLPVSA+QIVSSLVQI+VNIQ TLIQ+ NG +GA+N
Sbjct: 1274 AFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAAN 1333
Query: 774 SVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLL 833
VGQGSVLPTSPSGGSTDS+ ASRST + GINT+SFVSRSGYTCQQLSCLLIQACGLLL
Sbjct: 1334 GVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLL 1393
Query: 834 AQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGN 893
AQLPPDFH+QLY+EA+R+ +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGN
Sbjct: 1394 AQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGN 1453
Query: 894 IVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKT 953
IVALLH+FFSNLPQEWL+GT+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKT
Sbjct: 1454 IVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKT 1513
Query: 954 LALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVL 1013
L LLL+ + DV+GK APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L L
Sbjct: 1514 LMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILAL 1573
Query: 1014 TGRAAESLRPEVQHLLSHLKPDVNSSIYAATH 1045
GRAAE+LRP+VQHLL+HLK + NSSIYAA H
Sbjct: 1574 IGRAAETLRPDVQHLLAHLKTNPNSSIYAAAH 1605
>sp|Q9W1X7|MED23_DROME Mediator of RNA polymerase II transcription subunit 23 OS=Drosophila
melanogaster GN=MED23 PE=1 SV=1
Length = 1439
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 144/677 (21%), Positives = 274/677 (40%), Gaps = 113/677 (16%)
Query: 172 GQVVASIAMVETYTRLMLLAP-HSLFRSLFSHLAQRNPSLLAKVGVTPL--VLEIVNYRL 228
GQV A+ A++ETY RL++ SL + L+Q P++ L ++E+ +YRL
Sbjct: 559 GQVPAA-ALLETYARLLVYTEIESL--GIKGFLSQLMPTVFKNHAWAMLHTLMEMFSYRL 615
Query: 229 LPL---YRYQGKTKTLMYDITKIISALKVKRG-DHRVLRLAENLCMNLILSQ-RDFFSLK 283
+ YR Q + + +++ + LRL ++ Q +F+ K
Sbjct: 616 HHVPTHYRVQLLSLLHSLSSVPQTNKMQLNLCFESTALRLITSIGSAEFQPQFSRYFNDK 675
Query: 284 REGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLR 343
G ++ +E LNR+ ++ LA + G D + + + L I+ + H+W +L
Sbjct: 676 SPGAVASNESEELNRVLILTLARSMHVHGGGD-EMQGWCKDFLSNIIQHTPHSWPMHSLA 734
Query: 344 YFPSLLRDALIGR----IDKRGL--TIQAWQQAETTVINQ---CTQLLSPSADPTYVKTY 394
FP L + +K+ L ++ + T++ N+ L P+ +P +
Sbjct: 735 CFPPALNEYFTQNNQPPENKQQLKKAVEEEYRTWTSMTNENDIIAHFLRPTTNPLF---- 790
Query: 395 LSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIH 454
LC I+ + ENI S ++L S +++++ D L+
Sbjct: 791 -----------LCLLFKIIWET--ENI-SPVAYKILEGISARALSTHLRKFCDYLV---- 832
Query: 455 VELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHA-----LRIVITL 509
E+ +D + K I+ + ++ +D ++L L R + + L I + L
Sbjct: 833 AEVASSSDGRDFIHKCVDTINNMIWKFNVVTIDRVVLCLALRTHEGNEAQVCFLIIQLLL 892
Query: 510 LDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY-----------P 558
L EL+ RV+ +C + P +HW S K L H + E++ P
Sbjct: 893 LKASELRNRVQEFCKDNNP-DHWKQSNW-----QDKHLSFHQKYPEKFALDESASQIPLP 946
Query: 559 TFFDDIAARLLPVIPLIVYRLIE---NDAMDSADRVLATYSSFLAYYPLRFSFVRDILAY 615
+F ++ R LPV+ ++V+R IE + +L S ++ +++ + L Y
Sbjct: 947 VYFSNVCLRFLPVLDVVVHRFIELTITNVHQILGFILDHLSILYKFHDRPITYLYNTLHY 1006
Query: 616 FYG------HLPGKLIVRILNVFDLSKIP---FSESFPQHISSSNPVMCPPLDYFATLLL 666
+ L KL+ I + F + P SE + ++ S + + P L Y+ +L+
Sbjct: 1007 YERILRDRPALKKKLVGAITSAFSEIRPPNWSVSEPYKVYLQSQDSLWTPELSYYMSLIR 1066
Query: 667 GLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQ 726
L + + SG + S N+ P + P++
Sbjct: 1067 RLADTI---------SGKNVFYSTDWRFNEFP----NAPTH------------------- 1094
Query: 727 LVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQG-SVLPTSP 785
L +E+L LPV+ + S+L+ ++V+ + Q Y N+VG + LP
Sbjct: 1095 -ALYVTCVELLGLPVAPPLVASNLIDVIVSGYAVIPQKDIHSY--INAVGIVLAALPEPY 1151
Query: 786 SGGSTDSLGASRSTPSV 802
G D L +TP++
Sbjct: 1152 WSGIYDRLQDMLNTPNM 1168
>sp|Q16HH9|MED23_AEDAE Mediator of RNA polymerase II transcription subunit 23 OS=Aedes
aegypti GN=MED23 PE=3 SV=1
Length = 1409
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 141/680 (20%), Positives = 266/680 (39%), Gaps = 124/680 (18%)
Query: 179 AMVETYTRLMLLAP-HSLFRSLFSHLAQRNPSLL--AKVGVTPLVLEIVNYRL---LPLY 232
A+VETY+RL++ SL F L Q P + A G+ +LE+ +YR+ P Y
Sbjct: 577 ALVETYSRLLVYTEIESLGIKGF--LGQLLPQVFKSAAWGILYTLLEMFSYRMHHIQPHY 634
Query: 233 RYQGKTKTLMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQRDFFSLKREG 286
R Q L+ + + S + + LRL L + +Q + +++
Sbjct: 635 RVQ-----LLSHLHSLASVPHTNQMQLHSCVESTALRLITGLGSVEVQAQMSRYVTEQKA 689
Query: 287 KGS--TEFTETLNRITVIALAIIIKTRGIA-DADHVLYLQTMLEQIMATSQHTWSEKTLR 343
G+ + +E LNR ++ LA ++ G D + + +L IM + HTWS+ TL+
Sbjct: 690 PGNIVSAESEELNRALILTLARSMQITGTGNDPQSTTWCKELLNSIMQNTPHTWSQHTLQ 749
Query: 344 YFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVK-TYLSHSFPQH 402
FP +L D ++ + V + QLL S D Y T +S+
Sbjct: 750 CFPPVLNDLVV----------------QHNVPKENKQLLKKSVDEEYRNWTSMSNENDII 793
Query: 403 RQYLCAGA--------WILMQGHPE-NINSANLLRVLREFSPEEVTSNIYTMVDVLLHHI 453
+ AG +L + E + S ++L +++++ + D L+ +
Sbjct: 794 GHFGTAGTPGTPPLFLCLLFKMIVETDTISPVAYKILERIGARALSAHLRKLCDYLVFEV 853
Query: 454 HVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALR-----IVIT 508
H + K I+ + + ++ +D L+L L R + + + I +
Sbjct: 854 SNSGDGAH-----VNKCVDTINDMIWKYNIITIDRLVLCLSLRTLEGNEAQVSFCIIQLL 908
Query: 509 LLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY----------- 557
LL E + R++ + ++ PEHW + +R L H + E++
Sbjct: 909 LLKTSEFRNRLQEF-VSINSPEHWKQNNWHER-----HLAFHQKFPEKFTPDESVSHPSL 962
Query: 558 PTFFDDIAARLLPVIPLIVYRLIENDAMDSA--DRVLATYSSFLAYYPLRFSFVRDILAY 615
P +F ++ R LPV+ + ++R +E A S D +L ++ +++ + L Y
Sbjct: 963 PVYFGNVCLRFLPVLDITIHRYLEVPAAMSKTLDVLLDHLGPLYKFHDRPITYLYNTLHY 1022
Query: 616 F----------YGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLL 665
+ L G +I + +V +E + ++S + +
Sbjct: 1023 YERMLRDRPQLKKRLVGTVIGSLKDVRP-DNWAVTEQYQSYMSKKDDAV----------- 1070
Query: 666 LGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRK-EFYQNQDPGTY 724
N +P LNY M ++ +N+ G F + +P +
Sbjct: 1071 -----NWMPDLNYYIYLVRRMQDTIDG-------------TNIFPGTDWRFNEFPNPPAH 1112
Query: 725 TQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQ-GSVLPT 783
L +E+L LPV + +SL+ +VV P + S + N++G + LP
Sbjct: 1113 A---LYVTCVELLGLPVGPQGVANSLIDVVVKGYPVI--PSQSVHNWINTIGLIMAALPE 1167
Query: 784 SPSGGSTDSLGASRSTPSVS 803
S G + L S P ++
Sbjct: 1168 SYWGVIYERLREVISCPQMT 1187
>sp|Q5RIW8|MED23_DANRE Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio
GN=med23 PE=2 SV=2
Length = 1376
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 140/684 (20%), Positives = 272/684 (39%), Gaps = 114/684 (16%)
Query: 132 PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-----GQVVASIAMVETYTR 186
P M V PLPM+LL +++ + L + + + + A+VETY+R
Sbjct: 510 PGTNCMASGSVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSLALAPALVETYSR 569
Query: 187 LML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVNYRL---LPLYRYQGKTKT 240
L++ + SL + ++Q P++ G+ +LE+ +YR+ P YR Q
Sbjct: 570 LLVYMEIESL--GIKGFISQLLPNVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQL---- 623
Query: 241 LMYDITKIISALKVKRGDHRVLRLA-ENLCMNLILS------QRDFFSLKREGKG--STE 291
++ + S V + + L L E+ + LI + Q F + K S E
Sbjct: 624 ----LSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAE 679
Query: 292 FTETLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSL 348
+E LNR ++ LA +D+ + + +L+ IM + H W+ TL FP+
Sbjct: 680 -SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMNFTPHNWASHTLSCFPAP 738
Query: 349 LRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCA 408
L+ + + ++ + V + + S + + + + P +LC
Sbjct: 739 LQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSMQGSPP--LFLCL 792
Query: 409 GAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLF 468
+L++ ++IN RVL + +++ T D L++ E Q L
Sbjct: 793 LWKMLLET--DHINQIG-FRVLERIGARALVAHVRTFADFLVY----EFSTSAGGQQL-- 843
Query: 469 KACANI-SFFVLTHELLPLDILLLALIDRDDDPHALRIV-----ITLLDRQELQQRVKLY 522
C I + V + ++ LD L+L L R + + ++ + LL + + RV +
Sbjct: 844 NKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF 903
Query: 523 CMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK--------------ERYPTFFDDIAAR 567
+ PEHWL S K + K L ++ + P +F ++ R
Sbjct: 904 -VKENAPEHWLQSDWHTKHMTYHKKYPEKLYFEGLAEQVNPPIQLQSQYLPIYFGNVCLR 962
Query: 568 LLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGH------L 620
LPV ++++R +E S + +L ++ +++ + L Y+ H L
Sbjct: 963 FLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYERHLRDRTNL 1022
Query: 621 PGKLIVRILNVFDLSKIP---FSESFPQ--HISSSNPVMCPPLDYFATLLLGLVNNVIPA 675
KL+ I++ ++ P SE++ + + + V P Y+ L+ LV+ +
Sbjct: 1023 KRKLVHAIMSSLKDNRTPGWCLSETYLKCGMNAREDNVWIPDDTYYCKLIGRLVDTMA-- 1080
Query: 676 LNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 735
KSP GP + R F + +P + L +E
Sbjct: 1081 -------------------GKSP-----GPFPNCDWR--FNEFPNPAAHA---LHVTCVE 1111
Query: 736 ILSLPVSASQIVSSLVQIVVNIQP 759
+++L V + ++L+ +V+ QP
Sbjct: 1112 LMALAVPGKDVGNALLNVVLKSQP 1135
>sp|Q5EB59|MED23_RAT Mediator of RNA polymerase II transcription subunit 23 OS=Rattus
norvegicus GN=Med23 PE=2 SV=2
Length = 1367
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 136/692 (19%), Positives = 271/692 (39%), Gaps = 130/692 (18%)
Query: 132 PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-----GQVVASIAMVETYTR 186
P + V PLPM+LL +++ + L + + V + A+VETY+R
Sbjct: 510 PGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHTKSSVALAPALVETYSR 569
Query: 187 LML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVNYRL---LPLYRYQGKTKT 240
L++ + SL + ++Q P++ G+ +LE+ ++R+ P YR Q
Sbjct: 570 LLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSHRMHHIQPHYRVQ----- 622
Query: 241 LMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTE 294
L+ + + + + + + LRL L + + Q F + S E +E
Sbjct: 623 LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAE-SE 681
Query: 295 TLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRD 351
LNR ++ LA +D+ + + +L+ IM + H W+ TL FP+ L+
Sbjct: 682 ELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMTFTPHNWASHTLSCFPAPLQ- 740
Query: 352 ALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAW 411
+ + ++ + V + + S + + + + FP +LC
Sbjct: 741 ---AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQFSMQGFPP--LFLCLLWK 795
Query: 412 ILMQ-GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKA 470
+L++ H I +VL + +++ T D L++ E Q L
Sbjct: 796 MLLETDHISQIG----YKVLERIGARALVAHVRTFADFLVY----EFSTSAGGQQL--NK 845
Query: 471 CANI-SFFVLTHELLPLDILLLALIDRDDDPHALRIV-----ITLLDRQELQQRVKLYCM 524
C I + V + ++ LD L+L L R + + ++ + LL + + RV + +
Sbjct: 846 CIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF-V 904
Query: 525 NRGPPEHWLYSGLFKRVELQKALGNHLSWKERY------------------------PTF 560
PEHWL S + H+S+ ++Y P +
Sbjct: 905 KENSPEHWLQSDWHTK---------HMSYHKKYPEKLYFEGLAEQVDPPVPIQSPYLPIY 955
Query: 561 FDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYF--- 616
F ++ R LPV ++++R +E S + +L ++ +++ + L Y+
Sbjct: 956 FGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMC 1015
Query: 617 ---YGHLPGKLIVRILNVFDLSK---IPFSESFPQHISSS---NPVMCPPLDYFATLLLG 667
HL KL+ I+ ++ S+++ +H ++ NP + P Y+ L+
Sbjct: 1016 LRNRDHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNAREDNPWV-PEDSYYCKLIGR 1074
Query: 668 LVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQL 727
LV+ + KSP GP + R F + +P +
Sbjct: 1075 LVDTMA---------------------GKSP-----GPFPNCDWR--FNEFPNPAAHA-- 1104
Query: 728 VLETAVIEILSLPVSASQIVSSLVQIVVNIQP 759
L +E+++L V + ++L+ +V+ QP
Sbjct: 1105 -LHVTCVELMALAVPGKDVGNALLNVVLKSQP 1135
>sp|Q9ULK4|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo
sapiens GN=MED23 PE=1 SV=2
Length = 1368
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 134/680 (19%), Positives = 269/680 (39%), Gaps = 106/680 (15%)
Query: 132 PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-----GQVVASIAMVETYTR 186
P M + PLPM+LL +++ + L + + V + A+VETY+R
Sbjct: 510 PGTNCMASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSVALAPALVETYSR 569
Query: 187 LML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVNYRL---LPLYRYQGKTKT 240
L++ + SL + ++Q P++ G+ +LE+ +YR+ P YR Q
Sbjct: 570 LLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQ----- 622
Query: 241 LMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTE 294
L+ + + + + + + LRL L + + Q F + S E +E
Sbjct: 623 LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLSDPKTVLSAE-SE 681
Query: 295 TLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRD 351
LNR ++ LA +D+ + + +L+ IM+ + H W+ TL FP L+
Sbjct: 682 ELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWASHTLSCFPGPLQ- 740
Query: 352 ALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAW 411
+ + ++ + V + + S S + + + P +LC
Sbjct: 741 ---AFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNENDIITHFSMQGSPP--LFLCLLWK 795
Query: 412 ILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKAC 471
+L++ ++IN RVL + +++ T D L++ E Q L C
Sbjct: 796 MLLET--DHINQIG-YRVLERIGARALVAHVRTFADFLVY----EFSTSAGGQQL--NKC 846
Query: 472 ANI-SFFVLTHELLPLDILLLALIDRDDDPHALRIV-----ITLLDRQELQQRVKLYCMN 525
I + V + ++ LD L+L L R + + ++ + LL + + RV + +
Sbjct: 847 IEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF-VK 905
Query: 526 RGPPEHWLYSGLFKRVELQKALGNHLSWKERY------------------------PTFF 561
PEHWL + + H+++ ++Y P +F
Sbjct: 906 ENSPEHWLQNDWHTK---------HMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPIYF 956
Query: 562 DDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 620
++ R LPV ++++R +E S + +L ++ +++ + L Y+ HL
Sbjct: 957 GNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMHL 1016
Query: 621 PGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNS 680
+ ++ V + ++ PQ S+ + ++ N +P Y
Sbjct: 1017 RDRAFLKRKLVHAIIG-SLKDNRPQGWCLSDTYLKCAMNAREE------NPWVPDDTYYC 1069
Query: 681 K-SGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSL 739
+ G +D KSP GP + R F + +P + L +E+++L
Sbjct: 1070 RLIGRLVDTMA----GKSP-----GPFPNCDWR--FNEFPNPAAHA---LHVTCVELMAL 1115
Query: 740 PVSASQIVSSLVQIVVNIQP 759
VS ++ ++L+ +V+ QP
Sbjct: 1116 AVSGKEVGNALLNVVLKSQP 1135
>sp|Q80YQ2|MED23_MOUSE Mediator of RNA polymerase II transcription subunit 23 OS=Mus
musculus GN=Med23 PE=1 SV=2
Length = 1367
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 136/692 (19%), Positives = 271/692 (39%), Gaps = 130/692 (18%)
Query: 132 PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-----GQVVASIAMVETYTR 186
P + V PLPM+LL +++ + L + + V + A+VETY+R
Sbjct: 510 PGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHTKSSVALAPALVETYSR 569
Query: 187 LML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVNYRL---LPLYRYQGKTKT 240
L++ + SL + ++Q P++ G+ +LE+ ++R+ P YR Q
Sbjct: 570 LLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSHRMHHIQPHYRVQ----- 622
Query: 241 LMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTE 294
L+ + + + + + + LRL L + + Q F + S E +E
Sbjct: 623 LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAE-SE 681
Query: 295 TLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRD 351
LNR ++ LA +D+ + + +L+ IM + H W+ TL FP+ L+
Sbjct: 682 ELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMNFTPHNWASHTLSCFPAPLQ- 740
Query: 352 ALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAW 411
+ + ++ + V + + S + + + + FP +LC
Sbjct: 741 ---AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQFSVQGFPP--LFLCLLWK 795
Query: 412 ILMQ-GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKA 470
+L++ H I +VL + +++ T D L++ E Q L
Sbjct: 796 MLLETDHISQIG----YKVLERIGARALVAHVRTFADFLVY----EFSTSAGGQQL--NK 845
Query: 471 CANI-SFFVLTHELLPLDILLLALIDRDDDPHALRIV-----ITLLDRQELQQRVKLYCM 524
C I + V + ++ LD L+L L R + + ++ + LL + + RV + +
Sbjct: 846 CIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDF-V 904
Query: 525 NRGPPEHWLYSGLFKRVELQKALGNHLSWKERY------------------------PTF 560
PEHWL S + H+S+ ++Y P +
Sbjct: 905 KENSPEHWLQSDWHTK---------HMSYHKKYPEKLYFEGLAEQVDPPVPIQSPYLPIY 955
Query: 561 FDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYF--- 616
F ++ R LPV ++++R +E S + +L ++ +++ + L Y+
Sbjct: 956 FGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMC 1015
Query: 617 ---YGHLPGKLIVRILNVFDLSK---IPFSESFPQHISSS---NPVMCPPLDYFATLLLG 667
HL KL+ I+ ++ S+++ +H ++ NP + P Y+ L+
Sbjct: 1016 LRNRDHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNAREDNPWV-PEDSYYCKLIGR 1074
Query: 668 LVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQL 727
LV+ + KSP GP + R F + +P +
Sbjct: 1075 LVDTMA---------------------GKSP-----GPFPNCDWR--FNEFPNPAAHA-- 1104
Query: 728 VLETAVIEILSLPVSASQIVSSLVQIVVNIQP 759
L +E+++L V + ++L+ +V+ QP
Sbjct: 1105 -LHVTCVELMALAVPGKDVGNALLNVVLKSQP 1135
>sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcription subunit 23
OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=3
Length = 1589
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 123/305 (40%), Gaps = 28/305 (9%)
Query: 337 WSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLS 396
W EK+ +FP + I + D + L + TT ++ ++ + YV Y
Sbjct: 781 WPEKSTTFFPKWALEE-IKKTDVKKLAPNYAEILSTT--DEAFRMNTLLTGGQYVIRYAD 837
Query: 397 HSFPQHRQYLCAGAWILMQ--GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIH 454
P Y C A I Q PE ++ +V+ + SP+++ M + L+ I
Sbjct: 838 D--PNPITYHCMLAVIFKQLCSKPEQDLTSEYYQVMEKKSPKDIV----VMGNYLVDFII 891
Query: 455 VELQRGHSLQDLLFKACANISFFVLTH-ELLPLDILLLALI---DRDDDPH-ALRIVITL 509
+++ + FK A + + H + D LL+LI D+D ++I
Sbjct: 892 ADVKNNQDCNEQTFKTIAKTAALMCFHFNIHRADRFLLSLIMHPSTDEDAQICIQIANEF 951
Query: 510 LDRQELQQRVKLYCMNRGP-----PEHWL-----YSGLFKRVELQKAL--GNHLSWKERY 557
L + Q+R+K + N P P ++ Y F E + + +
Sbjct: 952 LLTPKFQERIKWFYENDVPRKEKDPYEYIKAIVKYHDAFPEFEACQLVPKNDDTGTNVHM 1011
Query: 558 PTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFY 617
PT++ + RLLP++ VY +E ++ +L S F Y+P+ F+ +L +
Sbjct: 1012 PTYYGCLIERLLPILDQYVYVALEQQGYKMSNALLQLVSMFYRYHPMPIHFMYSVLFVSH 1071
Query: 618 GHLPG 622
G + G
Sbjct: 1072 GKMAG 1076
>sp|Q6P423|MED23_XENLA Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus
laevis GN=med23 PE=2 SV=1
Length = 1369
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 102/497 (20%), Positives = 200/497 (40%), Gaps = 70/497 (14%)
Query: 129 NLP-PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASI-----AMVE 182
N+P P M + PLPM+LL +++ + L + + S A+VE
Sbjct: 506 NIPLPGSNCMASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKMAQAKSTFALAPALVE 565
Query: 183 TYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVNYRL---LPLYRYQG 236
TY+RL++ + SL + ++Q P++ G+ +LE+ +YR+ P YR Q
Sbjct: 566 TYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQL 623
Query: 237 KTKTLMYDITKIISALKVKRGDHRVLRLA-ENLCMNLILS------QRDFFSLKREGKG- 288
++ + S V + + L L E+ + LI + Q F + K
Sbjct: 624 --------LSHLHSLAGVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLSDPKTV 675
Query: 289 -STEFTETLNRITVIALAIIIKTRGIADADHVL---YLQTMLEQIMATSQHTWSEKTLRY 344
S E +E LNR ++ +A + + + +L+ I++ + H W+ TL
Sbjct: 676 LSAE-SEELNRALILTIARATHVTDFFTGSESIQGTWCKDILQTIISFTPHNWALHTLSC 734
Query: 345 FPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQ 404
FP+ L+ + + ++ + V + + S + + + + P
Sbjct: 735 FPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSLQGSPP--L 788
Query: 405 YLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQ 464
+LC +L++ + IN RVL + +++ T D L++ G L
Sbjct: 789 FLCLLWKMLLET--DQINQIG-YRVLERIGARALVAHVRTFADFLVYEFSTS-AGGQQLN 844
Query: 465 DLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIV-----ITLLDRQELQQRV 519
K ++ V + ++ LD L+L L R + + ++ + LL + + RV
Sbjct: 845 ----KCIEMLNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRV 900
Query: 520 KLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK--------------ERYPTFFDDI 564
+ + PEHWL + K + K L ++ + P +F ++
Sbjct: 901 SDF-VKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVNPPVQIQPQYLPIYFGNV 959
Query: 565 AARLLPVIPLIVYRLIE 581
R LPV ++++R +E
Sbjct: 960 CLRFLPVFDIVIHRFLE 976
>sp|Q55BN0|MED23_DICDI Putative mediator of RNA polymerase II transcription subunit 23
OS=Dictyostelium discoideum GN=med23 PE=3 SV=1
Length = 1662
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 30/172 (17%)
Query: 478 VLTHELLPLDILLLALIDRDDDPHALRIVIT-LLDRQELQQRVKLYCMNRGPPEHWLYSG 536
+ T+++L L+ +LLAL+DRDD P I+ T L E+Q R++ + P + S
Sbjct: 1052 IFTYKILTLNSVLLALLDRDDHPSMPTILDTFLFSSAEIQNRLQFFS---TYPSDFFISQ 1108
Query: 537 LFKRVELQKALGNHLSWKERY-----------------------PTFFDDIAARLLPVIP 573
F+ + + + R+ P ++ + +RL+P++
Sbjct: 1109 SFRNDD--NYFIKNCEFNNRFNDLIPTVIDPNTLIEQSTQDTILPIYYSNSISRLMPIVE 1166
Query: 574 LIVYRLIENDAMDSADRVLATYSSFLAYY-PLRFSFVRDILAYFYGHLPGKL 624
+I+ + IE + D ++ + ++ YY + + ++D L Y+Y KL
Sbjct: 1167 IIISKSIELNNGDLFEKTINHFNIPYHYYQDEKETTIKDTLIYYYDSQLFKL 1218
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 89/191 (46%), Gaps = 19/191 (9%)
Query: 169 IFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRL 228
+ +V S +E Y R + P + LFS+ + ++ V+E V++RL
Sbjct: 716 LLDKEVPISPGFLEDYCRTVHYTPGPVSPFLFSYFKK-----FHRLAPIHAVIESVSHRL 770
Query: 229 LPLYRYQGKTKTLMYDITKI-----ISALKVKRG-DHRVLRLAENLCMNLILSQRDFFSL 282
L + + + L+ + I I +++ R D+ +L+ + +L ++LI +
Sbjct: 771 LKVLKSNKELAVLLRALQDIQTQKPIQNIQLSRSIDYLLLKASISLPVDLISA------- 823
Query: 283 KREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTL 342
+E S + NR + ++A +IK +GI D + + + +E ++ + +S+ TL
Sbjct: 824 -KEIWKSLDLGLFNNRRLITSIARLIKLKGIQDFNRISDVPVFIENCFKSNPYCFSKSTL 882
Query: 343 RYFPSLLRDAL 353
+FP +L++
Sbjct: 883 EFFPDILKNEF 893
>sp|Q5HT53|PPK_CAMJR Polyphosphate kinase OS=Campylobacter jejuni (strain RM1221) GN=ppk
PE=3 SV=1
Length = 694
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 324 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 381
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 382 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 436
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 437 EVTSNIYTMVDVLLHHIHVELQRGHSL 463
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|A1W0X7|PPK_CAMJJ Polyphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=ppk PE=3 SV=1
Length = 694
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 324 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 381
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 382 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 436
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 437 EVTSNIYTMVDVLLHHIHVELQRGHSL 463
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|Q9PMU0|PPK_CAMJE Polyphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=ppk PE=3 SV=1
Length = 694
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 324 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 381
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 382 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 436
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 437 EVTSNIYTMVDVLLHHIHVELQRGHSL 463
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|A8FN39|PPK_CAMJ8 Polyphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype
O:6 (strain 81116 / NCTC 11828) GN=ppk PE=3 SV=1
Length = 694
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 324 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 381
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 382 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 436
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 437 EVTSNIYTMVDVLLHHIHVELQRGHSL 463
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|Q10669|MED23_CAEEL Mediator of RNA polymerase II transcription subunit 23
OS=Caenorhabditis elegans GN=sur-2 PE=1 SV=1
Length = 1587
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 116/302 (38%), Gaps = 24/302 (7%)
Query: 337 WSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPT-YVKTYL 395
W EK+ YFP DA+ K T A E + T + S P +V Y
Sbjct: 774 WPEKSTSYFPKWALDAI-----KASDTSNAVNTEEILSDVRNTARMHTSLTPNQFVIRYG 828
Query: 396 SHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHV 455
P C A + + ++ N+ E ++ I M + L+ +I +
Sbjct: 829 EDRDPATSH--CMLAVLFHFAYNSVDSTYNITSEFYEVMEKKTPKEIVVMGNYLVDYI-I 885
Query: 456 ELQRGHSLQDLLFKACANIS-FFVLTHELLPLDILLLALI----DRDDDPHALRIVITLL 510
+ + FK A + V ++L D LLL+LI +D ++I +
Sbjct: 886 ADAKTQDCNEKTFKNIAKAAALLVFQFQVLRADRLLLSLIMHPATDEDALICIQIANEFI 945
Query: 511 DRQELQQRVKLYCMNRGPPEHW---------LYSGLFKRVELQKALGNHLSWKERY-PTF 560
E Q+R++ Y N +H+ Y F E + + ++ S + PT+
Sbjct: 946 LTPEFQERIRWYHQNVPKKDHFPTEYIKAIVKYHDAFPEFEACELVRSYDSSSNVHMPTY 1005
Query: 561 FDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 620
+ + RLLP++ ++ +E ++L + S ++ + F+ +L +G +
Sbjct: 1006 YGCLIERLLPIMDQYLHVALEQQGYKLNPQILQSVSMLYKFHAMPIHFMYSVLFTSHGLM 1065
Query: 621 PG 622
G
Sbjct: 1066 SG 1067
>sp|A7H220|PPK_CAMJD Polyphosphate kinase OS=Campylobacter jejuni subsp. doylei (strain
ATCC BAA-1458 / RM4099 / 269.97) GN=ppk PE=3 SV=1
Length = 694
Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 324 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 381
T L+Q+ A ++ EK L YF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLEHYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 382 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 436
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKIFDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 437 EVTSNIYTMVDVLLHHIHVELQRGHSL 463
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|Q96M86|DNHD1_HUMAN Dynein heavy chain domain-containing protein 1 OS=Homo sapiens
GN=DNHD1 PE=2 SV=2
Length = 4753
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 28 DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYM 87
D + Q L + + +C +R + + + + QK KQ + WW Q+ K R++DYM
Sbjct: 468 DTYHMQQCLQERVQNCDRIRTGQGSIYLQRVQHKQLEQKLKQAEAWWLQLGKFARLVDYM 527
>sp|Q4R989|PDZD9_MACFA PDZ domain-containing protein 9 OS=Macaca fascicularis GN=PDZD9
PE=2 SV=1
Length = 264
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 795 ASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQ--ACGLLLAQLPPDFHMQLYMEASRII 852
ASR G++ S + Q + L + GL++ Q P Y++ + +I
Sbjct: 4 ASRKNKKERGVSIKVKTSVHNLSKTQQTKLTVGRLGLGLIIIQHGP------YLQITHLI 57
Query: 853 KESWWLADGKRSLGELDSAVGYA-LLDPTWAA--QDNTSTAIGNIVAL-LHSFFSNLPQE 908
++ DGK G++ +VGYA +L T Q +G ++ + ++ F N+P+E
Sbjct: 58 RKGAAANDGKLQPGDVLISVGYANVLGYTLREFLQLLQHITVGTVLQIKVYRDFINIPEE 117
Query: 909 WLEGTHVIIKHLRPITS 925
WLE +I + P+TS
Sbjct: 118 WLEIYDLIPEAKFPVTS 134
>sp|P89876|POLG_LMVE Genome polyprotein OS=Lettuce mosaic virus (strain E) PE=3 SV=1
Length = 3255
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 940 LPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVV-----HYE 994
LPR++ H KT ++ D YG T ++A+ + L+ F H + HY
Sbjct: 841 LPRILVDHA--TKTFHVI-----DSYGSITTGYHILKANTVTQLVKFAHESLESEMQHYR 893
Query: 995 GQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQN 1051
G P +A KP V L ++L E ++ ++P++ I A P+M+++
Sbjct: 894 VGGEPDKAPRKPAGNVPTLGISDLKNLGVESENEEHSIRPNLQRLIKAIYRPRMMRS 950
>sp|P31999|POLG_LMV0 Genome polyprotein OS=Lettuce mosaic virus (strain 0 / isolate
French) PE=2 SV=3
Length = 3255
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 940 LPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVV-----HYE 994
LPR++ H KT ++ D YG T ++A+ + L+ F H + HY
Sbjct: 841 LPRILVDHA--TKTFHVI-----DSYGSITTGFHILKANTVTQLVKFAHESLESEMQHYR 893
Query: 995 GQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQN 1051
G P +A KP V L L E+++ ++P++ I A P+M+++
Sbjct: 894 VGGEPDKAPRKPAGSVPTLGISDLRDLGVELENEEHSIRPNLQRLIKAIYRPRMMRS 950
>sp|P0CJ97|MVP_LMV0 P3N-PIPO polyprotein OS=Lettuce mosaic virus (strain 0 / isolate
French) PE=2 SV=2
Length = 1152
Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 940 LPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVV-----HYE 994
LPR++ H KT ++ D YG T ++A+ + L+ F H + HY
Sbjct: 841 LPRILVDHA--TKTFHVI-----DSYGSITTGFHILKANTVTQLVKFAHESLESEMQHYR 893
Query: 995 GQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQN 1051
G P +A KP V L L E+++ ++P++ I A P+M+++
Sbjct: 894 VGGEPDKAPRKPAGSVPTLGISDLRDLGVELENEEHSIRPNLQRLIKAIYRPRMMRS 950
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,658,424
Number of Sequences: 539616
Number of extensions: 15863556
Number of successful extensions: 39447
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 39293
Number of HSP's gapped (non-prelim): 162
length of query: 1053
length of database: 191,569,459
effective HSP length: 128
effective length of query: 925
effective length of database: 122,498,611
effective search space: 113311215175
effective search space used: 113311215175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)