Query 001558
Match_columns 1053
No_of_seqs 60 out of 62
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 03:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11573 Med23: Mediator compl 100.0 7E-207 1E-211 1863.5 60.7 876 1-995 395-1341(1341)
2 KOG1883 Cofactor required for 100.0 3E-191 6E-196 1654.9 37.9 934 5-1049 496-1511(1517)
3 KOG1883 Cofactor required for 100.0 8.1E-56 1.8E-60 519.6 29.9 747 88-1032 492-1378(1517)
4 COG0781 NusB Transcription ter 30.2 22 0.00047 36.9 0.7 71 656-756 53-124 (151)
5 PRK00202 nusB transcription an 19.3 69 0.0015 31.8 1.9 102 624-756 9-111 (137)
6 PHA02992 hypothetical protein; 17.5 2.8E+02 0.006 35.6 6.7 132 426-568 132-282 (728)
7 PF12231 Rif1_N: Rap1-interact 15.3 6.9E+02 0.015 29.2 8.9 112 834-968 81-209 (372)
8 KOG1165 Casein kinase (serine/ 14.6 2.2E+02 0.0047 34.0 4.6 50 623-672 245-303 (449)
9 COG5657 CSE1 CAS/CSE protein i 13.7 4.2E+02 0.0092 34.9 7.0 38 908-945 142-180 (947)
10 cd00619 Terminator_NusB Transc 13.5 1.2E+02 0.0027 29.6 2.0 71 656-756 38-109 (130)
No 1
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=100.00 E-value=6.9e-207 Score=1863.50 Aligned_cols=876 Identities=30% Similarity=0.435 Sum_probs=777.6
Q ss_pred CCCCCccchhhhhhhhhhhhcccccCCCCCCcchhhhhhhccccceeEeecccchHHhhcHHHHhhh-hhHHHHHHhhhc
Q 001558 1 MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKG-KQIDEWWRQVSK 79 (1053)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-k~~~ew~~~~~~ 79 (1053)
+++|++|.++|.+..++|.+++|+..+...||++.+.+|+.+|+.+++ +-+...+++.+++++.++ |+|+|||++..+
T Consensus 395 ~n~lsd~~~~v~~L~~~Ly~e~e~l~~pd~~~~~~v~~~aaaCiWi~L-~kk~~~~~~~~~~~i~~~lk~~~e~l~~~~~ 473 (1341)
T PF11573_consen 395 KNPLSDDFQPVLDLYNLLYPEKEPLPVPDDNPPSCVRFFAAACIWIHL-SKKAQSKNYEINRQIPEHLKQIHEFLQHLTS 473 (1341)
T ss_pred cccchhhHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHHHH-HhhccccccccccCCcHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999977776 666666777789999998 999999999986
Q ss_pred cCccccccccCCccchhhhhhH--hhhcCcccchhhhhhccccccccccCCCCCCCccccccccccccchhhhhhhhhHh
Q 001558 80 GDRMMDYMNMDDRSVGMFWVVS--YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNL 157 (1053)
Q Consensus 80 g~~~~~~~n~D~~~~~m~~vls--~~~~~p~~d~~m~~~~~~~~~e~i~~~~~~p~~~~~a~~~~~Plsm~lLd~Lt~h~ 157 (1053)
|.+ ++|||++++||+|||+ |++.||.|+++|+|+..+++++.-+++...++.+++|+++++||||++||+||+|+
T Consensus 474 ~~~---~~n~d~~~~~~lavl~NaYs~~~~~~~~vm~~l~~~i~g~~~~~~~~~~~~~~~a~~~~~Plpm~lLd~LT~h~ 550 (1341)
T PF11573_consen 474 PNN---IMNLDMRSDYMLAVLCNAYSTDQPYFDRVMNWLVEAIDGEPDPSQPFELSYGRMAFNKTSPLPMSLLDSLTVHS 550 (1341)
T ss_pred Ccc---ccccccccchhhhhhhhhhccCcHHHHHHHHHHHHHhccCCCCCCCCCCCccccccCCCCCCCHHHHHHHhHHH
Confidence 555 8999999999999998 58899999999999999999996666555789999999999999999999999999
Q ss_pred hHHHHHHHHHhhh----ccCccC-----ChhHHHHHHHhhhccch-hhhHhhhhhhhccCh-----hhhh--hcchhhHH
Q 001558 158 CLKLALQMEDSIF----GGQVVA-----SIAMVETYTRLMLLAPH-SLFRSLFSHLAQRNP-----SLLA--KVGVTPLV 220 (1053)
Q Consensus 158 k~~Li~qi~~~~f----~~~~vP-----SPAlvETYsRLL~~te~-sL~~k~f~~lsQ~~p-----sv~k--a~g~l~~L 220 (1053)
||+|++||+++++ +|+.+| |||+||||+|+|+|+|+ +||.|+| .+|..| .++| +||++|+|
T Consensus 551 k~sL~~~i~~~l~~~a~~k~~~P~~~~~s~alvETY~rlL~~~eiesL~~r~l--~s~~~~~~~~~~~~k~~a~~~l~~L 628 (1341)
T PF11573_consen 551 KMSLIHSIVTHLFKFAQSKQPVPAVFETSPALVETYSRLLVYKEIESLGIRSL--ASQLVPDRSPNTVQKSQAWGQLHTL 628 (1341)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhHh--HHhhcccccccccccccchHHHHHH
Confidence 9999999999887 479999 99999999999999999 6899999 667766 7787 99999999
Q ss_pred HHHHhhcccccccccCcchhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhc---------cccc-ccCCCCcc
Q 001558 221 LEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRD---------FFSL-KREGKGST 290 (1053)
Q Consensus 221 LEilsYRL~p~yR~qlls~~ll~~l~~i~~~~~n~~q~h~l~r~~E~~~LrlI~sl~s---------~~~~-~ke~~~ps 290 (1053)
|||+||||++++++ .+.+.|+|+.+.+ ..+++||||++||+||+|||+|++||+ |+.. +.++..++
T Consensus 629 lEilsYRL~~l~~~-~k~~~L~~l~~~~---~~~~~~n~qL~~~~E~~~Lrli~~Lgs~~~~~~~~~~~~~~k~Pk~~~~ 704 (1341)
T PF11573_consen 629 LEILSYRLHHLQPY-YKVQLLSHLHTLI---SVNQPNNHQLYRLLENTCLRLITGLGSSEKQPQLSRFFNECKNPKTFTS 704 (1341)
T ss_pred HHHHHhcccccCcc-chHHHHHHHHHHh---ccCccccHHHHHHHHHHHHHHHHHcCccccchHHHHHHHhccCcccccc
Confidence 99999999543333 4444455555444 458889999999999999999999987 2333 22344568
Q ss_pred chhHhHHHHHHHHHHHHHHhcccccc-hhhhhHHHHHHHHHhhCCCCCchhhhccCcHHHHHHHhccCCCCCcchhhHHH
Q 001558 291 EFTETLNRITVIALAIIIKTRGIADA-DHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQ 369 (1053)
Q Consensus 291 ~~sEeLNR~lIltlAr~iK~tGi~d~-~~~~~~~~~L~~im~~tph~Ws~kTL~~FP~~L~~~~~~~~d~~~~~~~~~qq 369 (1053)
++||||||++|+||||+|||||+++. .++.||+++|++||+++||+||+||++|||++|+++|+++.+++ ++|||
T Consensus 705 ~~seELNR~lIltLARsikitg~~~~~~~~~~~~e~L~~i~~~t~h~Wp~~Tl~~FP~~l~~~~~~~~~~~----~~~~~ 780 (1341)
T PF11573_consen 705 QESEELNRILILTLARSIKITGIGADSQSQEWCKEFLEQIMANTPHGWPEKTLRCFPDFLREFFEQNNDTR----EPKQQ 780 (1341)
T ss_pred ccCHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHhCCCCCchHHHHhCCHHHHHHHHhCCCCC----cccHH
Confidence 89999999999999999999987654 46799999999999999999999999999999999999984433 79999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHhhhhcccCCCCchhHHHHHHHHhCC--CCCCCchHHHHHHhhCChHHHHHhhhhhhh
Q 001558 370 AETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGH--PENINSANLLRVLREFSPEEVTSNIYTMVD 447 (1053)
Q Consensus 370 l~~tV~~e~~~~~s~s~e~~~v~~~i~hf~p~~~~fLC~l~~~l~e~~--~~~I~~~~~yrvLe~isp~~lt~~i~~fvD 447 (1053)
++++|++||++|.++++|+++|+.|++| ++|++|||++|||+|+++ +++|+|.+ |+|||+||||++++|+|+|||
T Consensus 781 ~~~~ve~e~~~~~~~~~e~~~v~~f~~~--~~~~~fLC~i~~~l~~~~~~~~~i~~~~-y~vLe~i~p~~l~~~i~~fvD 857 (1341)
T PF11573_consen 781 QKKQVEEEYRQWLSMSNENQIVMHFSDH--NTHPLFLCVIWKMLMENQDETENISSVF-YKVLERISPRELTAHIRTFVD 857 (1341)
T ss_pred HHHhHHHHHHHHHccCChHHHHHHhccC--CCCceeHHHHHHHHHhhhcccccccHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999444444444 579999999999999544 56899987 999999999999999999999
Q ss_pred hhhhhhhccccCCCcchHHHHHHHHHHhhhhhhccceehhhhhhhhccCCCCCc-----hhhhhhhcCCcHHHHHHHHHH
Q 001558 448 VLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLY 522 (1053)
Q Consensus 448 ~Lv~e~~~~~~~~~~~q~l~~k~v~~L~~mIWky~IiplDrlLLaL~lR~~e~~-----~liIqllLL~~~EfqnRV~~F 522 (1053)
|||+|+++ . +++++ ++||+++||+|||||||||+|||+|||++||+||+ ++|||++|++++||||||++|
T Consensus 858 ylv~e~~~---~-~~~~~-~~k~v~~L~~~iw~~~ivplDrllL~L~~r~~~d~~a~i~~~Ii~~lll~~~ef~~Rv~~F 932 (1341)
T PF11573_consen 858 YLVYEFKV---S-QDGQQ-LFKCVDTLNDMIWKYNIVPLDRLLLALALRPHDDNDAQICFQIIQLLLLKSPEFQNRVQWF 932 (1341)
T ss_pred HHHHHHhc---C-CcHHH-HHHHHHHHHHHHHHhceeeHHHHHHHHhccCCCchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999985 2 33456 78999999999999999999999999999998776 467999999999999999999
Q ss_pred HhcCCCCCcccccch------hhhHhhHHH----HccC-----CCCCCCCCcchhhHHhhhcCchHHHHHHHHhcCc---
Q 001558 523 CMNRGPPEHWLYSGL------FKRVELQKA----LGNH-----LSWKERYPTFFDDIAARLLPVIPLIVYRLIENDA--- 584 (1053)
Q Consensus 523 ~~~~~spehW~~~~~------~~r~fpE~~----l~~~-----~s~~~~lPvYFgNvclR~LPViDivI~R~LE~~~--- 584 (1053)
|++ ++||||++++| ||++|||++ ++++ .+++++|||||||+|+|||||+||+|||+||+++
T Consensus 933 ~~~-~~~ehw~~~~~~~k~~~yh~kfPE~f~~e~~~~~~~~~~~~~~~~lPvYfgn~~lR~LPVlDivi~R~lE~~~~~~ 1011 (1341)
T PF11573_consen 933 VKI-NPPEHWTQSDWFKKHLEYHSKFPEKFYFEALGSHTSSEESSQNPHLPVYFGNVCLRLLPVLDIVIHRFLELPAPPL 1011 (1341)
T ss_pred Hhh-CCHhhcccchHHHHHHHHHHhCCcccCchhhccccCcccCCCCCCCCchhccHHHHHhhhHHHHHHHHHHhcchhh
Confidence 999 99999999999 568899955 4544 3478899999999999999999999999999994
Q ss_pred hhhHHHHHHhhccccccCCcchhHHHHHHHhhhcCCchH----HHHHHHhhccCCCC---CCCchhhhhhcCCCC--CCC
Q 001558 585 MDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGK----LIVRILNVFDLSKI---PFSESFPQHISSSNP--VMC 655 (1053)
Q Consensus 585 ~k~le~LL~~~~~LYrYHd~PvTfvy~tL~Yy~~~Lp~k----LV~~Ilg~ld~~r~---~lSesf~~yl~~~~~--~~~ 655 (1053)
.|+||++|++||+||||||+|+||||+|||||||+|+++ ||.+|+|+++++|+ +|||+|.+|+++++. +|+
T Consensus 1012 ~~~le~lL~~~~~LyryH~~P~tf~y~tL~yy~~~l~~~~kk~Lv~~i~g~l~~~~~~~~~lSe~f~~~~~~~~~~~~~~ 1091 (1341)
T PF11573_consen 1012 SKSLETLLDHYGPLYRYHDRPVTFLYSTLHYYEGKLRGRPKKKLVSAILGSLDESRPPGWPLSESFQQYLHQKSSPEVWV 1091 (1341)
T ss_pred HHHHHHHHHHhhHHHHcCCcchHHHHHHHHHHhhccCCchHHHHHHHHHhhcccccCCCcccCHHHHHHhcccCCCCCCC
Confidence 788999999999999999999999999999999999995 99999999999996 599999999997763 699
Q ss_pred CChHHHHHHHHHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCcchhhhHhHhhhhhh
Q 001558 656 PPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 735 (1053)
Q Consensus 656 P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~~d~s~~~~~~~fp~~s~~~~~~~~~~dwrF~E~~nP~~~al~~L~tacIE 735 (1053)
||++||++||+|||+++ |++. +|+.|+.+||||+|||||++||+ +++|||
T Consensus 1092 P~~~Y~~~Li~rL~~~~--------------~~~~-------------~~~~f~~~dwrf~Ef~np~a~aL---~~~ciE 1141 (1341)
T PF11573_consen 1092 PDLDYYMELIDRLVDTI--------------DGIN-------------PPPPFVATDWRFNEFPNPAAHAL---YVTCIE 1141 (1341)
T ss_pred CcHHHHHHHHHHHHHhc--------------cccC-------------CCCCCCCCCcchhcCCCHHHHHH---HHHHHH
Confidence 99999999999999555 5543 23467779999999999999965 588999
Q ss_pred hhcCCCCHHHHHHHHHHHhhhcCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCccccccccccc
Q 001558 736 ILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSG 815 (1053)
Q Consensus 736 LLsLP~~p~~vv~aLvdvv~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ps~~~~~~~~~~~~~~~~~~in~s~~~~~~~ 815 (1053)
|||||++|++||+||||||+++++.+ |.+ . +.
T Consensus 1142 lmalP~~p~~v~~aLidvv~~~~~~~--------------------P~~---------------~---------i~---- 1173 (1341)
T PF11573_consen 1142 LMALPVSPEDVANALIDVVVKGYSVI--------------------PRE---------------Q---------IH---- 1173 (1341)
T ss_pred HHcCCCCHHHHHHHHHHHHhcCCCCC--------------------CHH---------------H---------HH----
Confidence 99999999999999999999988666 552 1 11
Q ss_pred ccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHhcccccccCCCCCccccccccccccCCccccccccCC---chhH
Q 001558 816 YTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS---TAIG 892 (1053)
Q Consensus 816 ~~~~~~s~l~InAigLlLaaLP~~f~~~ly~e~~~vi~~~~~~~d~~~~~~~~ds~~~y~l~d~t~~~~~~t~---~~~~ 892 (1053)
.||||+|||||+||++||+++|+++++++++..+.. .++ ...||+.+||+...+...+ +.+.
T Consensus 1174 --------~~iNaigLiltaLP~~Y~~~l~~~ii~~l~s~~~~~-~~~------~~~pf~~~~F~~~~~~~l~~~~~~~~ 1238 (1341)
T PF11573_consen 1174 --------SWINAIGLILTALPESYWNVLHDRIIEVLTSPEMTN-LTY------RCSPFELFNFDNYEESMLEKMTNPYS 1238 (1341)
T ss_pred --------HHHHHHHHHHHhCcHHHHHHHHHHHHHHhCCccccc-ccc------CCChhHhhccchHHHHHHHhhhhhHH
Confidence 299999999999999999999999999999987443 221 2478999999999998888 9999
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHH-hhcCC-cchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccCCC
Q 001558 893 NIVALLHSFFSNLPQEWLEGTHVII-KHLRP-ITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTL 970 (1053)
Q Consensus 893 ~ilAl~Ha~~~h~~~~~L~~~~~~i-~~lrP-v~Te~QL~~~~~lvgP~L~Rf~~~r~~~~~~l~~ll~~l~~vvdK~~q 970 (1053)
+++|++|||||||++|+|+++++++ ++++| |+||+||+|+|||||||||||+.||++|+.++++++|.|++.|||+.
T Consensus 1239 ~~lal~ha~w~H~~i~qL~~lp~~~~e~l~p~VkTE~Qlly~chLV~PfL~Rf~~er~~~~~~i~i~ly~~l~~vd~~~- 1317 (1341)
T PF11573_consen 1239 YILALAHAYWHHCNIGQLTSLPQFLKEKLKPHVKTEEQLLYLCHLVGPFLQRFMRERTRCLMDITIELYELLKQVDKAQ- 1317 (1341)
T ss_pred HHHHHHHHHHHhcCHHHHHHhHHHHHHhhcchhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc-
Confidence 9999999999999999999999997 99999 89999999999999999999999999999999999999999999953
Q ss_pred CCCCccchhhhhhhhhhhee-eEeec
Q 001558 971 PPAPVEASEIADLIDFLHHV-VHYEG 995 (1053)
Q Consensus 971 ~~~~vel~~id~IcDFlyHi-ym~~G 995 (1053)
++++++|+|+|||||||| |||+|
T Consensus 1318 --~~~~l~~~d~ICDllYhiKYmfvG 1341 (1341)
T PF11573_consen 1318 --EGVELKYEDPICDLLYHIKYMFVG 1341 (1341)
T ss_pred --cCccceehhhHHHHhhhheeeecC
Confidence 356999999999999999 99999
No 2
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=100.00 E-value=2.7e-191 Score=1654.88 Aligned_cols=934 Identities=24% Similarity=0.273 Sum_probs=849.8
Q ss_pred CccchhhhhhhhhhhhcccccCCCCCCcchhhhhhhccccceeEeecccchHHhhcHHHHhhhhhHHHHHHhhhccCccc
Q 001558 5 NSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMM 84 (1053)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~ew~~~~~~g~~~~ 84 (1053)
.+|..|+++++||+ |++||+.|+++|++.|||+||||||+|||++.++.|.+++.+++-+|| +|+||+.- +|
T Consensus 496 m~n~~kia~l~niy--~~~t~~~~~~~Pm~~LLe~i~~~~t~ri~~lst~~~A~~~~t~lpv~~-lDslt~~s-----km 567 (1517)
T KOG1883|consen 496 MSNDAKIALLCNIY--RTSTNMEKFIVPMGQLLESISSNGTKRIPELSTKRMAVNSFTALPVEF-LDSLTVHS-----KM 567 (1517)
T ss_pred ccchHHHHHHHHHH--hccccccccCCcHHHHHHHHhcCCccccCCCCcceeeecccchhhHHH-HHHHHHHH-----HH
Confidence 46899999999999 999999999999999999999999999999999999999999999999 99999944 89
Q ss_pred cccccCCccchhhhhhHhhhcCcccchhhhhhccccccccccCCCCCCCccccccccccccchhhhhhhhhHhhHHHHHH
Q 001558 85 DYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQ 164 (1053)
Q Consensus 85 ~~~n~D~~~~~m~~vls~~~~~p~~d~~m~~~~~~~~~e~i~~~~~~p~~~~~a~~~~~Plsm~lLd~Lt~h~k~~Li~q 164 (1053)
||+++|++.+||||+++++++||+|+++.+|+++++..| ++| +.+++|++++-++.|++|+.+. ++.++
T Consensus 568 sli~~~~~~l~sf~tv~l~~aq~~~~va~~~~s~~~~~~-~~~--le~~arllv~~ei~sl~isg~~--------~~~~~ 636 (1517)
T KOG1883|consen 568 SLIHQCFQPLRSFSTVRLKSAQVKETVAKACESEDYEMA-VAL--LETYARLLVYVEIESLGISGEH--------QNVQA 636 (1517)
T ss_pred HHHHhcccccceeEEEEecccccchhhhhccccchhhhh-hcc--cchhhhhheeeeeeccccCchh--------hhhhh
Confidence 999999999999999999999999999999999999888 443 3344444444444444444332 11111
Q ss_pred HHHhhhccCccCChhHHHHHHHhhhccchhhhHhhhhhhhccChhhhh--hcchhhHHHHHHhhcc---cccccccCcch
Q 001558 165 MEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLA--KVGVTPLVLEIVNYRL---LPLYRYQGKTK 239 (1053)
Q Consensus 165 i~~~~f~~~~vPSPAlvETYsRLL~~te~sL~~k~f~~lsQ~~psv~k--a~g~l~~LLEilsYRL---~p~yR~qlls~ 239 (1053)
..+- + | ++|.+|+++| +|+.+|+++|++|||+ +++||+|+++.
T Consensus 637 ~~~~--------------------------~----F--lsqllptv~~~hay~~l~tl~~~~syr~hhiq~~~r~~ll~~ 684 (1517)
T KOG1883|consen 637 KDQC--------------------------Y----F--LSQLLPTVFKHHAYSKLHTLVEMFSYRTHHIQNHYRVQLLSR 684 (1517)
T ss_pred HHhh--------------------------h----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 1110 0 5 8999999999 9999999999999999 89999999997
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhc---------ccccccCCCCccchhHhHHHHHHHHHHHHHHh
Q 001558 240 TLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRD---------FFSLKREGKGSTEFTETLNRITVIALAIIIKT 310 (1053)
Q Consensus 240 ~ll~~l~~i~~~~~n~~q~h~l~r~~E~~~LrlI~sl~s---------~~~~~ke~~~ps~~sEeLNR~lIltlAr~iK~ 310 (1053)
+|.+..+ ++.|++|.|. |+|++++|+|+++|+ ||+++.+|++|+++||||||++|+||||++||
T Consensus 685 --l~~~~lv--p~~~~~g~h~---ci~s~a~rliTalk~ae~~~q~~~ffs~k~pg~~psa~seeLnR~~IlTlara~kv 757 (1517)
T KOG1883|consen 685 --LHELFLV--PQTNWAGLHL---CIESTALRLITALKSAEMQPQFARFFSDKVPGQVPSAESEELNRMLILTLARAVKV 757 (1517)
T ss_pred --HHHHHhh--HHHHhhhhhh---hHHHHHHHHHHHhcccchhHhHhhhcccCCCCcCcccccHHHHHHHHHHHHHHhhc
Confidence 9998877 9999999998 999999999999976 99999999999999999999999999999999
Q ss_pred cccccchhhhhHHHHHHHHHhhCCCCCchhhhccCc-HHHHHHHhccCCCCCcchhhHHHHHHHHHHHHhhccCCCCChh
Q 001558 311 RGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFP-SLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPT 389 (1053)
Q Consensus 311 tGi~d~~~~~~~~~~L~~im~~tph~Ws~kTL~~FP-~~L~~~~~~~~d~~~~~~~~~qql~~tV~~e~~~~~s~s~e~~ 389 (1053)
||++|.++|.|||+||++||++|||+||+||++||| ..|.++|.+| |.++|||||++++|+||||+|+||+|||
T Consensus 758 tggad~i~~vw~ktml~tIi~~t~h~W~ektls~FP~~aL~a~~~q~----~~~~en~qql~~~V~ne~r~~tSmsnen- 832 (1517)
T KOG1883|consen 758 TGGADDIQGVWCKTMLPTIINTTPHGWPEKTLSCFPKWALDAIFAQN----NSPAENTQQLKKDVENEYRMWTSMSNEN- 832 (1517)
T ss_pred ccCCCchhhHHHHHHHHHHHhcCCCCCchhhhhhCCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHhcCCCCcc-
Confidence 999999999999999999999999999999999999 7788888776 9999999999999999999999999999
Q ss_pred hHHhhhhccc-C-CCCchhHHHHHHHHhCCCCCCCchHHHHHHhhCChHHHHHhhhhhhhhhhhhhhccccCCCcchHHH
Q 001558 390 YVKTYLSHSF-P-QHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLL 467 (1053)
Q Consensus 390 ~v~~~i~hf~-p-~~~~fLC~l~~~l~e~~~~~I~~~~~yrvLe~isp~~lt~~i~~fvD~Lv~e~~~~~~~~~~~q~l~ 467 (1053)
+||.||. + .+|+|||++|...|.++++||||++ |||||++||||+++|+||||||||++++ .+.++|+++
T Consensus 833 ---~~V~~yl~~~~p~~~lCll~~~~m~~~teNIns~~-yrVLe~isprelva~~~tlvDyLvad~~----t~~~~e~~l 904 (1517)
T KOG1883|consen 833 ---DIVIHYLEDRDPPLFLCLLFAYKMVDETENINSEF-YRVLEKISPRELVAHGRTLVDYLVADAK----TSDCGEKTL 904 (1517)
T ss_pred ---hhhhhhccCCCchhHHHHHHHHHhcccccccCHHH-HHHHHhcCHHHHHHHHHHHHHHhhhhhh----cccchHHHH
Confidence 6666666 4 4899999997777666699999999 9999999999999999999999998888 566699999
Q ss_pred HHHHHHHhhhhhhccceehhhhhhhhccCCCCCc-----hhhhhhhcCCcHHHHHHHHHHHhcCCCCCcccccch-----
Q 001558 468 FKACANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGL----- 537 (1053)
Q Consensus 468 ~k~v~~L~~mIWky~IiplDrlLLaL~lR~~e~~-----~liIqllLL~~~EfqnRV~~F~~~~~spehW~~~~~----- 537 (1053)
+||+++||+||||||++|+||||||||+|++||+ ++|+|++|+++ |||+||++|||+ |+||||. ++|
T Consensus 905 ~k~~~~la~mvwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~lLltp-df~~RI~~yck~-nsPeHwl-~~~~~k~~ 981 (1517)
T KOG1883|consen 905 KKCAKALALMVWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLLLLTP-DFRNRIRWYCKQ-NSPEHWL-TEWIKKHV 981 (1517)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhcccccCCcchhHHHHHHHHhcCH-HHHHHHHHHHhc-CCcchhh-HHHHHHHH
Confidence 9999999999999999999999999999998887 55666666655 999999999996 9999999 788
Q ss_pred -hhhHhhHHH---HccC--CCCCCCCCcchhhHHhhhcCchHHHHHHHHhcCc-hhhHHHHHHhhccccccCCcchhHHH
Q 001558 538 -FKRVELQKA---LGNH--LSWKERYPTFFDDIAARLLPVIPLIVYRLIENDA-MDSADRVLATYSSFLAYYPLRFSFVR 610 (1053)
Q Consensus 538 -~~r~fpE~~---l~~~--~s~~~~lPvYFgNvclR~LPViDivI~R~LE~~~-~k~le~LL~~~~~LYrYHd~PvTfvy 610 (1053)
||++|||+. +.++ ++.+.+||+||||+|+|||||+|+|+||+||+++ .|++++||||+|.||||||+|+||||
T Consensus 982 ~yhka~pe~~~~e~~~qyd~~~~~~lPtyf~~v~~RlLPV~d~vlhr~lE~~~~~k~~~~lL~hls~lykfH~~pitfly 1061 (1517)
T KOG1883|consen 982 KYHKAYPEKEACELARQYDSSSNVHLPTYFGNVCLRLLPVMDQVLHRFLELQGVEKLLPQLLDHLSMLYKFHDRPITFLY 1061 (1517)
T ss_pred HHHHhcchHHHHHHHHhcCCccccCCccHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCceehhH
Confidence 889999965 5555 3457799999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHHhhhcCC---ch--HHHHHHHhhccCCCCCCCchhhhhhcCCCCCCCCChHHHHHHHHHHHhccccccccCCCCCCc
Q 001558 611 DILAYFYGHL---PG--KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGST 685 (1053)
Q Consensus 611 ~tL~Yy~~~L---p~--kLV~~Ilg~ld~~r~~lSesf~~yl~~~~~~~~P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~ 685 (1053)
|||||||+|| |+ |||.+|.+++++ ++|||+|.+|+++++..|||+.||||+||+||||++.+
T Consensus 1062 ntl~y~~~hL~~~p~kk~lv~a~~~~lse--i~lSE~f~k~~~q~~ap~~pel~y~~sLi~rLvdt~~~----------- 1128 (1517)
T KOG1883|consen 1062 NTLHYYEHHLRDRPLKKKLVLAIATQLSE--IRLSEAFEKFNHQKGAPWSPELDYYMSLIDRLVDTLDG----------- 1128 (1517)
T ss_pred HHHHHHHhhhhcCcchhhHHHHHhhhhhh--CccchhHHHHhccCCCCCCCcHHHHHHHHHHHHhhcCC-----------
Confidence 9999999999 44 888899999888 66999999999999999999999999999999987743
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCcchhhhHhHhhhhhhhhcCCCCHHHHHHHHHHHhhh---------
Q 001558 686 MDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVN--------- 756 (1053)
Q Consensus 686 ~d~s~~~~~~~fp~~s~~~~~~~~~~dwrF~E~~nP~~~al~~L~tacIELLsLP~~p~~vv~aLvdvv~~--------- 756 (1053)
.+. |+|+.+||||+||+||++||+| .+|+|+|++|++|..+|++++++++.
T Consensus 1129 ---~l~--------------~~f~ncdwR~~e~~n~~a~al~---~~cvelma~~~sgp~~asalinv~~~~q~~~p~~~ 1188 (1517)
T KOG1883|consen 1129 ---KLT--------------PPFVNCDWRFNEFPNPGAHALY---VTCVELMALPVSGPTVASALINVMQMKQHARPFNQ 1188 (1517)
T ss_pred ---CCC--------------CCCcccccccccCCCccccccc---cchhhhcCCCCCcHhHHHHHHHHHhhCCCCCchhH
Confidence 321 2455599999999999999665 66799999999998888877766554
Q ss_pred -------------------------------cCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCc
Q 001558 757 -------------------------------IQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGI 805 (1053)
Q Consensus 757 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~P~~ps~~~~~~~~~~~~~~~~~~i 805 (1053)
.+++.+|+++|+||.-+|+|+++++|++||+|.|++ +.++|+--|+||
T Consensus 1189 ~~~na~~l~itaLP~~y~~~l~d~lv~vivnp~~t~~t~~~gf~~~~fd~~~~s~l~~~ps~a~Tl~-a~s~s~~lh~si 1267 (1517)
T KOG1883|consen 1189 LIVNATGLLITALPEPYWNALHDRLVAVIVNPQSTGETANLGFEFILFDFYEESLLLNEPSRARTLN-AISHSVWLHCSI 1267 (1517)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHcCccccchhhcCCCceeeccccchhccccCCccchhhH-HHHhHHHhhcch
Confidence 444567889999999999999999999999999998 899999999999
Q ss_pred ccccccccccccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc-cccccCCCCCccccccccccccCCcccccc
Q 001558 806 NTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKE-SWWLADGKRSLGELDSAVGYALLDPTWAAQ 884 (1053)
Q Consensus 806 n~s~~~~~~~~~~~~~s~l~InAigLlLaaLP~~f~~~ly~e~~~vi~~-~~~~~d~~~~~~~~ds~~~y~l~d~t~~~~ 884 (1053)
|.-+|+||+ |+|++++|+.+++++|.+++||.+|+..+|.|..|..-+ .||++|++.+.+|.| +||...||.|+.+
T Consensus 1268 ~~lsf~sr~-yt~~ll~cvkte~~llyl~~L~~pfl~r~qle~~r~~~e~~~~l~d~l~s~~e~~--v~l~ymdpicd~~ 1344 (1517)
T KOG1883|consen 1268 SLLSFFSRE-YTERLLPCVKTEKQLLYLLHLVGPFLQRKQLESQRENFEIVVLLYDKLGSVDEEG--VELVYMDPICDFL 1344 (1517)
T ss_pred HHHHhhhHH-hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhcC--CceeecchHHHHH
Confidence 999999999 999999999999999999999999999999999999998 899999999999988 9999999999999
Q ss_pred ccCC-chhHHHHH-HHHHHHhcCChhhhhhHHHHHhhcCCcchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHH
Q 001558 885 DNTS-TAIGNIVA-LLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMG 962 (1053)
Q Consensus 885 ~~t~-~~~~~ilA-l~Ha~~~h~~~~~L~~~~~~i~~lrPv~Te~QL~~~~~lvgP~L~Rf~~~r~~~~~~l~~ll~~l~ 962 (1053)
+++. ...|++++ .+|++|.+++.+|...+.-++.+.||+.+.+......+.+||.+||.....+.+.++...+.--..
T Consensus 1345 yn~ky~~~Gdivkn~~~a~f~nLp~~l~drlrfi~~~s~p~~~~at~~~~~~s~~~~~pa~sS~q~p~~~~~q~~p~~qq 1424 (1517)
T KOG1883|consen 1345 YNCKYFFAGDIVKNTAEAIFANLPPKLRDRLRFITHQSEPTEEQATPPEKENSPEESTPAVSSLQAPLLPSHQQMPPPQQ 1424 (1517)
T ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHhhhhhhhhcccccccccccchhhcCcccCCcccccccCccCchhhhCCCccC
Confidence 9988 88999999 999999999999999999889999999999999999999999999999999999999988888888
Q ss_pred hhhccCCCCCCCccchhhhhhhhhhheeeEeeccCCCCCCCCCCchhhhhhhhHhhhhCCHhHHHHhcccCCCCCCchhh
Q 001558 963 DVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYA 1042 (1053)
Q Consensus 963 ~vvdK~~q~~~~vel~~id~IcDFlyHiym~~G~~~~~~d~~k~~~e~~~~~~~~i~~LrP~lq~~L~hl~~d~~~~~~~ 1042 (1053)
+++||..|..+.++....++..|+.+|+-+++||||.||.++||++.++++.|+|-+-++|++||.+.|.+..+++++||
T Consensus 1425 ~~~~hq~q~t~q~q~~Qqq~~~~~qqqlqhq~~n~~~vQt~s~p~p~~l~~~g~~~~~~~~y~qHmqqH~h~~~~~~~~a 1504 (1517)
T KOG1883|consen 1425 HSSSHQMQDTSQHQTIQQQSNHPTQQQLQHQIPNMSMVQTMSPPYPGFLHPSGPVGHVPMQYGQHMQQHPHLPHHQQMPA 1504 (1517)
T ss_pred CchhhhhhhhhHHHHHHHHhcchHHHHHHHhccccceeeecCCCCCccccccccccccchhhHHHHHhccCCCccccCCc
Confidence 99999988888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccc
Q 001558 1043 ATHPKMV 1049 (1053)
Q Consensus 1043 ~~~~~~~ 1049 (1053)
+.|..+.
T Consensus 1505 ~~h~~n~ 1511 (1517)
T KOG1883|consen 1505 PMHTMNP 1511 (1517)
T ss_pred chhccCc
Confidence 9997653
No 3
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=100.00 E-value=8.1e-56 Score=519.58 Aligned_cols=747 Identities=17% Similarity=0.159 Sum_probs=424.9
Q ss_pred ccCCc-cchhhhhhHhhhcCcccchhhhhhccc--cccccc--cCCCCCCC--ccccccccccccchhhhhhhhhHhhHH
Q 001558 88 NMDDR-SVGMFWVVSYTMAQPACETVMNWLSSA--GVTELF--PGSNLPPN--ERLMVMREVNPLPMSLLTGFSLNLCLK 160 (1053)
Q Consensus 88 n~D~~-~~~m~~vls~~~~~p~~d~~m~~~~~~--~~~e~i--~~~~~~p~--~~~~a~~~~~Plsm~lLd~Lt~h~k~~ 160 (1053)
|+|.. +.+|++++.|+++ .||.|.++..| -+.|.| .|....|+ ..++|.+.++|||+++||+||+|+||+
T Consensus 492 ~~~~m~n~~kia~l~niy~---~~t~~~~~~~Pm~~LLe~i~~~~t~ri~~lst~~~A~~~~t~lpv~~lDslt~~skms 568 (1517)
T KOG1883|consen 492 NFDSMSNDAKIALLCNIYR---TSTNMEKFIVPMGQLLESISSNGTKRIPELSTKRMAVNSFTALPVEFLDSLTVHSKMS 568 (1517)
T ss_pred hhhhccchHHHHHHHHHHh---ccccccccCCcHHHHHHHHhcCCccccCCCCcceeeecccchhhHHHHHHHHHHHHHH
Confidence 44444 8899999999998 89999999988 244556 33333443 358999999999999999999999999
Q ss_pred HHHHHHH--hhh---------ccCccC-Ch---------hHHHHHHHhhhccch-hhhHhhhhhhhccChhhhhhcchhh
Q 001558 161 LALQMED--SIF---------GGQVVA-SI---------AMVETYTRLMLLAPH-SLFRSLFSHLAQRNPSLLAKVGVTP 218 (1053)
Q Consensus 161 Li~qi~~--~~f---------~~~~vP-SP---------AlvETYsRLL~~te~-sL~~k~f~~lsQ~~psv~ka~g~l~ 218 (1053)
|++++.. +.| .+.-++ ++ |.+|||+|+++|+|+ ++++|+....+| +++.++
T Consensus 569 li~~~~~~l~sf~tv~l~~aq~~~~va~~~~s~~~~~~~~~le~~arllv~~ei~sl~isg~~~~~~-------~~~~~~ 641 (1517)
T KOG1883|consen 569 LIHQCFQPLRSFSTVRLKSAQVKETVAKACESEDYEMAVALLETYARLLVYVEIESLGISGEHQNVQ-------AKDQCY 641 (1517)
T ss_pred HHHhcccccceeEEEEecccccchhhhhccccchhhhhhcccchhhhhheeeeeeccccCchhhhhh-------hHHhhh
Confidence 9997666 333 233333 44 899999999999999 799998633333 599999
Q ss_pred HHHHHHhhcccccccccCcchhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhcccccccCCCCccchhHhHHH
Q 001558 219 LVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNR 298 (1053)
Q Consensus 219 ~LLEilsYRL~p~yR~qlls~~ll~~l~~i~~~~~n~~q~h~l~r~~E~~~LrlI~sl~s~~~~~ke~~~ps~~sEeLNR 298 (1053)
++.+++-||+.. ..|..+. +++.-..+-..++.+..+.|+++|+.|..++++++-.|- +.
T Consensus 642 Flsqllptv~~~-hay~~l~-tl~~~~syr~hhiq~~~r~~ll~~l~~~~lvp~~~~~g~------------------h~ 701 (1517)
T KOG1883|consen 642 FLSQLLPTVFKH-HAYSKLH-TLVEMFSYRTHHIQNHYRVQLLSRLHELFLVPQTNWAGL------------------HL 701 (1517)
T ss_pred HHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHhhHHHHhhhh------------------hh
Confidence 999999999976 3354444 345555566667777778899999999999999985542 33
Q ss_pred HHHHHHHHHHHhcccccchhhhhHHHHHHHHHhhCCCCCchhhhccCcHHHHHHHhccCCCCCcchhhHHHHHHH-HHHH
Q 001558 299 ITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETT-VINQ 377 (1053)
Q Consensus 299 ~lIltlAr~iK~tGi~d~~~~~~~~~~L~~im~~tph~Ws~kTL~~FP~~L~~~~~~~~d~~~~~~~~~qql~~t-V~~e 377 (1053)
|.-.+--|.|.--|.+| +=+.++.||.-.+++..... .-+++-.. +---
T Consensus 702 ci~s~a~rliTalk~ae-----------------------------~~~q~~~ffs~k~pg~~psa-~seeLnR~~IlTl 751 (1517)
T KOG1883|consen 702 CIESTALRLITALKSAE-----------------------------MQPQFARFFSDKVPGQVPSA-ESEELNRMLILTL 751 (1517)
T ss_pred hHHHHHHHHHHHhcccc-----------------------------hhHhHhhhcccCCCCcCccc-ccHHHHHHHHHHH
Confidence 44444444443333322 12233334332222211111 11222111 1111
Q ss_pred Hhhc--cC----CCC--ChhhHHhhhhccc---CCCCchhHHH-H--HHHHhCCCCCCCchH----------HHHHHhhC
Q 001558 378 CTQL--LS----PSA--DPTYVKTYLSHSF---PQHRQYLCAG-A--WILMQGHPENINSAN----------LLRVLREF 433 (1053)
Q Consensus 378 ~~~~--~s----~s~--e~~~v~~~i~hf~---p~~~~fLC~l-~--~~l~e~~~~~I~~~~----------~yrvLe~i 433 (1053)
.|-. .. +++ ......++|+|.- |.+.+- |-= | +-+++ .++.+++| .||.+..+
T Consensus 752 ara~kvtggad~i~~vw~ktml~tIi~~t~h~W~ektls-~FP~~aL~a~~~--q~~~~~en~qql~~~V~ne~r~~tSm 828 (1517)
T KOG1883|consen 752 ARAVKVTGGADDIQGVWCKTMLPTIINTTPHGWPEKTLS-CFPKWALDAIFA--QNNSPAENTQQLKKDVENEYRMWTSM 828 (1517)
T ss_pred HHHhhcccCCCchhhHHHHHHHHHHHhcCCCCCchhhhh-hCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 1111 11 111 2222335555322 222111 221 1 22233 22344444 35555555
Q ss_pred ChHHHHHhhhhhhhhhhhhhhccccCCCcchHHHHHHHHHHhhhhhh-cccee--------------------hhhhhhh
Q 001558 434 SPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLT-HELLP--------------------LDILLLA 492 (1053)
Q Consensus 434 sp~~lt~~i~~fvD~Lv~e~~~~~~~~~~~q~l~~k~v~~L~~mIWk-y~Iip--------------------lDrlLLa 492 (1053)
|+|- ||+.+... ++ ... ...|.-.--.|+|. +||=+ |=-+|++
T Consensus 829 snen---------~~V~~yl~----~~--~p~-~~lCll~~~~m~~~teNIns~~yrVLe~isprelva~~~tlvDyLva 892 (1517)
T KOG1883|consen 829 SNEN---------DIVIHYLE----DR--DPP-LFLCLLFAYKMVDETENINSEFYRVLEKISPRELVAHGRTLVDYLVA 892 (1517)
T ss_pred CCcc---------hhhhhhcc----CC--Cch-hHHHHHHHHHhcccccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Confidence 5331 33333222 11 112 22343333334442 22211 1011222
Q ss_pred hccCCCCCc------------------hhhhhh---hcCCc----HHHH---HHHHHHHhcCCCCCcccccchhh-hHhh
Q 001558 493 LIDRDDDPH------------------ALRIVI---TLLDR----QELQ---QRVKLYCMNRGPPEHWLYSGLFK-RVEL 543 (1053)
Q Consensus 493 L~lR~~e~~------------------~liIql---lLL~~----~Efq---nRV~~F~~~~~spehW~~~~~~~-r~fp 543 (1053)
=+.-.++|. .+.+.. -|+.+ +|=+ +=++.+.. .||.=..=.||. |.=|
T Consensus 893 d~~t~~~~e~~l~k~~~~la~mvwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~lLl---tpdf~~RI~~yck~nsP 969 (1517)
T KOG1883|consen 893 DAKTSDCGEKTLKKCAKALALMVWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLLLL---TPDFRNRIRWYCKQNSP 969 (1517)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccCCcchhHHHHHHHHhc---CHHHHHHHHHHHhcCCc
Confidence 222222221 222222 23333 2322 22344444 345444445776 5566
Q ss_pred HHHHccC----CCCCCCCCc-chhhHHhhh-------cCc-hHHHHHHHHhcCchhhHHHHHHhhccccccCCcchhHHH
Q 001558 544 QKALGNH----LSWKERYPT-FFDDIAARL-------LPV-IPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVR 610 (1053)
Q Consensus 544 E~~l~~~----~s~~~~lPv-YFgNvclR~-------LPV-iDivI~R~LE~~~~k~le~LL~~~~~LYrYHd~PvTfvy 610 (1053)
|..+.+. ......+|= |+.-...|. ||+ +|=|+-|+|-.- +.-+-++|+--+ +|
T Consensus 970 eHwl~~~~~k~~~yhka~pe~~~~e~~~qyd~~~~~~lPtyf~~v~~RlLPV~-d~vlhr~lE~~~----~~-------- 1036 (1517)
T KOG1883|consen 970 EHWLTEWIKKHVKYHKAYPEKEACELARQYDSSSNVHLPTYFGNVCLRLLPVM-DQVLHRFLELQG----VE-------- 1036 (1517)
T ss_pred chhhHHHHHHHHHHHHhcchHHHHHHHHhcCCccccCCccHHHHHHHHHhccH-HHHHHHHHHHhh----HH--------
Confidence 6444332 222223444 333344444 565 577777776321 222222222211 11
Q ss_pred HHHHhhhcCCchHHHHHHHhh------ccCCCCCCCchhhhhhcCCCCCCCCChHHHHHHH------HHHHhcccccccc
Q 001558 611 DILAYFYGHLPGKLIVRILNV------FDLSKIPFSESFPQHISSSNPVMCPPLDYFATLL------LGLVNNVIPALNY 678 (1053)
Q Consensus 611 ~tL~Yy~~~Lp~kLV~~Ilg~------ld~~r~~lSesf~~yl~~~~~~~~P~~~Yf~~Li------~rLv~~vlp~~~~ 678 (1053)
|+..-||.. +.+. |+|=-|. .+.||-.-+ +.||-++.--+++
T Consensus 1037 ------------k~~~~lL~hls~lykfH~~--pitflyn------------tl~y~~~hL~~~p~kk~lv~a~~~~lse 1090 (1517)
T KOG1883|consen 1037 ------------KLLPQLLDHLSMLYKFHDR--PITFLYN------------TLHYYEHHLRDRPLKKKLVLAIATQLSE 1090 (1517)
T ss_pred ------------HHHHHHHHHHHHHHhcCCC--ceehhHH------------HHHHHHhhhhcCcchhhHHHHHhhhhhh
Confidence 111122211 2221 1121111 144443322 2233333332333
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCcchhhhHhHhhhhhhhhcCCCCHHH-----HHHHHHHH
Q 001558 679 NSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQ-----IVSSLVQI 753 (1053)
Q Consensus 679 ~~~~~~~~d~s~~~~~~~fp~~s~~~~~~~~~~dwrF~E~~nP~~~al~~L~tacIELLsLP~~p~~-----vv~aLvdv 753 (1053)
.+- |-.| .+|. +|+|.|...+.|.-..-+ ..|+ .-|+-|.+|.- =-+.+=|.
T Consensus 1091 i~l-------SE~f--~k~~--~q~~ap~~pel~y~~sLi--------~rLv----dt~~~~l~~~f~ncdwR~~e~~n~ 1147 (1517)
T KOG1883|consen 1091 IRL-------SEAF--EKFN--HQKGAPWSPELDYYMSLI--------DRLV----DTLDGKLTPPFVNCDWRFNEFPNP 1147 (1517)
T ss_pred Ccc-------chhH--HHHh--ccCCCCCCCcHHHHHHHH--------HHHH----hhcCCCCCCCCcccccccccCCCc
Confidence 321 1111 1122 244555555444311110 0122 22333333210 01111111
Q ss_pred hhhcCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CccCcccccccccccccccchhhHHHHHHHH
Q 001558 754 VVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTP--SVSGINTSSFVSRSGYTCQQLSCLLIQACGL 831 (1053)
Q Consensus 754 v~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ps~~~~~~~~~~~~~~--~~~~in~s~~~~~~~~~~~~~s~l~InAigL 831 (1053)
.. |..- |+ +.+.+|.+.|.+ ...+||.- -.++..--.-.+|+||+||
T Consensus 1148 ~a-------------~al~---------~~-----cvelma~~~sgp~~asalinv~----~~~q~~~p~~~~~~na~~l 1196 (1517)
T KOG1883|consen 1148 GA-------------HALY---------VT-----CVELMALPVSGPTVASALINVM----QMKQHARPFNQLIVNATGL 1196 (1517)
T ss_pred cc-------------cccc---------cc-----hhhhcCCCCCcHhHHHHHHHHH----hhCCCCCchhHHHHHHHHH
Confidence 11 0000 11 111222221111 11233311 1222222233679999999
Q ss_pred HHhcCChhHHHHHHHHHHHHhcccccccCCCCCccccccccccccCCccccccccCCchhHHHH-HHHHHHHhcCChhhh
Q 001558 832 LLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIV-ALLHSFFSNLPQEWL 910 (1053)
Q Consensus 832 lLaaLP~~f~~~ly~e~~~vi~~~~~~~d~~~~~~~~ds~~~y~l~d~t~~~~~~t~~~~~~il-Al~Ha~~~h~~~~~L 910 (1053)
+++|||++||.+||+|++.||.+.-.+.... .. -|+|.+||+.-+++..++...++.+ |++|++|+||+++.|
T Consensus 1197 ~itaLP~~y~~~l~d~lv~vivnp~~t~~t~-~~-----gf~~~~fd~~~~s~l~~~ps~a~Tl~a~s~s~~lh~si~~l 1270 (1517)
T KOG1883|consen 1197 LITALPEPYWNALHDRLVAVIVNPQSTGETA-NL-----GFEFILFDFYEESLLLNEPSRARTLNAISHSVWLHCSISLL 1270 (1517)
T ss_pred HHhcCCcHHHHHHHHHHHHHHcCccccchhh-cC-----CCceeeccccchhccccCCccchhhHHHHhHHHhhcchHHH
Confidence 9999999999999999999999843222111 11 2778999999999999999999999 999999999999999
Q ss_pred hhHHHHH-hhcCC-cchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCccchhhhhhhhhhh
Q 001558 911 EGTHVII-KHLRP-ITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLH 988 (1053)
Q Consensus 911 ~~~~~~i-~~lrP-v~Te~QL~~~~~lvgP~L~Rf~~~r~~~~~~l~~ll~~l~~vvdK~~q~~~~vel~~id~IcDFly 988 (1053)
+.++++. +++.| |+||+||||+||++||||+|+..|++|++.+++.++|..+..+|+++ |++.|+|+||||+|
T Consensus 1271 sf~sr~yt~~ll~cvkte~~llyl~~L~~pfl~r~qle~~r~~~e~~~~l~d~l~s~~e~~-----v~l~ymdpicd~~y 1345 (1517)
T KOG1883|consen 1271 SFFSREYTERLLPCVKTEKQLLYLLHLVGPFLQRKQLESQRENFEIVVLLYDKLGSVDEEG-----VELVYMDPICDFLY 1345 (1517)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhcC-----CceeecchHHHHHh
Confidence 9999996 99999 89999999999999999999999999999999999999998888876 59999999999999
Q ss_pred ee-eEeeccCCCCCCCCCCchhhhhhhhHhhhhCCHhHHHHhccc
Q 001558 989 HV-VHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHL 1032 (1053)
Q Consensus 989 Hi-ym~~G~~~~~~d~~k~~~e~~~~~~~~i~~LrP~lq~~L~hl 1032 (1053)
|+ |+|+| |.+|+.+| +++.+|+|.+|.|||++
T Consensus 1346 n~ky~~~G------divkn~~~------a~f~nLp~~l~drlrfi 1378 (1517)
T KOG1883|consen 1346 NCKYFFAG------DIVKNTAE------AIFANLPPKLRDRLRFI 1378 (1517)
T ss_pred hhhhhhhh------HHHHHHHH------HHHHcCCHHHHhhhhhh
Confidence 99 99999 99999999 99999999999999965
No 4
>COG0781 NusB Transcription termination factor [Transcription]
Probab=30.24 E-value=22 Score=36.94 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCcchhhhHhHhhhhhh
Q 001558 656 PPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 735 (1053)
Q Consensus 656 P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~~d~s~~~~~~~fp~~s~~~~~~~~~~dwrF~E~~nP~~~al~~L~tacIE 735 (1053)
.+..||..|+.+++++. ...|...... -.+|.|.+.+ +...|.+ -.|+-|
T Consensus 53 ~~~~~~~~lv~gv~~~~-----------~~iD~~I~~~----------------L~~w~~~rL~-~verAIL--Rla~yE 102 (151)
T COG0781 53 ADSEYFRSLVKGVLENQ-----------EELDELISPH----------------LKKWSLERLD-LVERAIL--RLALYE 102 (151)
T ss_pred hhHHHHHHHHHHHHHHH-----------HHHHHHHHHH----------------HccCCHHHhh-HHHHHHH--HHHHHH
Confidence 67999999999998777 4445532110 0459999999 7888865 788899
Q ss_pred hhcCC-CCHHHHHHHHHHHhhh
Q 001558 736 ILSLP-VSASQIVSSLVQIVVN 756 (1053)
Q Consensus 736 LLsLP-~~p~~vv~aLvdvv~~ 756 (1053)
++..+ +|...++|--|.++-+
T Consensus 103 l~~~~dvP~~VvInEaielaK~ 124 (151)
T COG0781 103 LLFRDDVPYKVVINEAIELAKK 124 (151)
T ss_pred HHhcCCCCCcchHHHHHHHHHH
Confidence 99999 9999999999999884
No 5
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=19.35 E-value=69 Score=31.78 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=60.9
Q ss_pred HHHHHHhhccCCCCCCCchhhhhhcCCCCCCCCChHHHHHHHHHHHhccccccccCCCCCCccccccCCCCCCCCCCCCC
Q 001558 624 LIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQS 703 (1053)
Q Consensus 624 LV~~Ilg~ld~~r~~lSesf~~yl~~~~~~~~P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~~d~s~~~~~~~fp~~s~~ 703 (1053)
++..++-+.....-.+++.+.+.+...+ .-..+..|..+|+.+...+. ...|.-.. .
T Consensus 9 ~a~~~L~~~~~~~~~~~~~l~~~~~~~~-~~~~d~~~~~~lv~gvlr~~-----------~~lD~ii~----~------- 65 (137)
T PRK00202 9 AAVQALYQWELSGNDIAEIIEAQLLEEQ-YDKADPAYFRSLVRGVVENQ-----------AELDELIS----P------- 65 (137)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhH-----------HHHHHHHH----H-------
Confidence 3444554444433344555555443221 11124567777777776444 22333211 0
Q ss_pred CCCCCCCCCcccccCCCcchhhhHhHhhhhhhhhcC-CCCHHHHHHHHHHHhhh
Q 001558 704 GPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSL-PVSASQIVSSLVQIVVN 756 (1053)
Q Consensus 704 ~~~~~~~~dwrF~E~~nP~~~al~~L~tacIELLsL-P~~p~~vv~aLvdvv~~ 756 (1053)
+. .+|++...+ |...+. |.+|+-|++-+ .+||..+++--|+++-+
T Consensus 66 ----~l-~~~~~~~l~-~~~~~i--Lr~a~~Ell~~~~~p~~~vinEaV~lak~ 111 (137)
T PRK00202 66 ----YL-KDWTLERLD-PVERAI--LRLALYELLFRDDVPYKVVINEAIELAKK 111 (137)
T ss_pred ----Hh-cCCCHHHhh-HHHHHH--HHHHHHHHHhCCCCCCcchHHHHHHHHHH
Confidence 11 358888877 556554 58999999999 67999999999999974
No 6
>PHA02992 hypothetical protein; Provisional
Probab=17.54 E-value=2.8e+02 Score=35.57 Aligned_cols=132 Identities=20% Similarity=0.311 Sum_probs=69.6
Q ss_pred HHHHHhhCChHHHHHhhhhhhhhhhhhhhccccCCCcchHHHH----HHHHHHhhhhhhccceehhhhhh----------
Q 001558 426 LLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLF----KACANISFFVLTHELLPLDILLL---------- 491 (1053)
Q Consensus 426 ~yrvLe~isp~~lt~~i~~fvD~Lv~e~~~~~~~~~~~q~l~~----k~v~~L~~mIWky~IiplDrlLL---------- 491 (1053)
+-.+|-.+++|-+-..=|.|.|=+..++-. ++ ++-.+=+- =..+.|.+|..||-|+|.+-=++
T Consensus 132 vd~iL~~iN~~Si~~isy~FSd~~~E~i~~--~d-~~m~~~lY~hQ~~s~~FL~~Mlyk~GI~P~N~Gi~~~~s~~~iie 208 (728)
T PHA02992 132 VDYILSFINKESIYRMSYQFSESLTEKIFI--QD-YSMYDPLYEHQSFTSDFLTDMLYKYGIVPNNDGILDEISIELIIE 208 (728)
T ss_pred HHHHHHhcchhhhhhhhhhccHHHHHHHHH--hc-hhhhhHhhhcCcCCHHHHHHHHHHcCCCCCCccccccCCHHHHHH
Confidence 344666677777666667777766666543 11 11111000 13578999999999999887555
Q ss_pred hhccCCCCCchhhhhhhcCCcHHHH-HHHHHHHhcC---CCCCcccccchhhhHhhHHHHccC-CCCCCCCCcchhhHHh
Q 001558 492 ALIDRDDDPHALRIVITLLDRQELQ-QRVKLYCMNR---GPPEHWLYSGLFKRVELQKALGNH-LSWKERYPTFFDDIAA 566 (1053)
Q Consensus 492 aL~lR~~e~~~liIqllLL~~~Efq-nRV~~F~~~~---~spehW~~~~~~~r~fpE~~l~~~-~s~~~~lPvYFgNvcl 566 (1053)
.|....+...+++. +..|...-+. ++|++|+-++ |.-|+|.. |-+++|..+ ...+...|+||++.+.
T Consensus 209 iL~~~~~~~D~~~f-Ld~L~~~~L~~d~~K~~ii~~I~~G~vd~y~~-------YA~eYL~d~~~dlGvYanIFFd~~~~ 280 (728)
T PHA02992 209 ILQSIKRPRDAIRF-LDMLPKEQLTDDKLKNYIINKIKNGKIDQYIP-------YAEEFLVDRKEDLGVYANIFFDDVAI 280 (728)
T ss_pred HHHhcCCchHHHHH-HHhcCHHhcCchHHHHHHHHHHHcCcchHHHH-------HHHHHHHhhHHhhcceeeeeecchhc
Confidence 12211111111111 1112222221 3566666542 44455543 444555554 3456688999998765
Q ss_pred hh
Q 001558 567 RL 568 (1053)
Q Consensus 567 R~ 568 (1053)
.+
T Consensus 281 ~l 282 (728)
T PHA02992 281 DL 282 (728)
T ss_pred ch
Confidence 43
No 7
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=15.33 E-value=6.9e+02 Score=29.23 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=71.3
Q ss_pred hcCChhHHHHHHHHHHHHhccc-----------ccccCCCCCccccccccccccCCccccccccCCchhHHHHHHHHHHH
Q 001558 834 AQLPPDFHMQLYMEASRIIKES-----------WWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFF 902 (1053)
Q Consensus 834 aaLP~~f~~~ly~e~~~vi~~~-----------~~~~d~~~~~~~~ds~~~y~l~d~t~~~~~~t~~~~~~ilAl~Ha~~ 902 (1053)
..||.+|...+|+...+.+.+. |.+++.+++ ..-++...+..+++..|.+-
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~------------------~~~~~~~~~~~l~~~l~~i~ 142 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS------------------PKIMTSDRVERLLAALHNIK 142 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC------------------CcccchhhHHHHHHHHHHhh
Confidence 5899999999999999999764 444443333 23446677889999999998
Q ss_pred hcCC-----hhhhhhHHHHHhhcCC-cchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccC
Q 001558 903 SNLP-----QEWLEGTHVIIKHLRP-ITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKN 968 (1053)
Q Consensus 903 ~h~~-----~~~L~~~~~~i~~lrP-v~Te~QL~~~~~lvgP~L~Rf~~~r~~~~~~l~~ll~~l~~vvdK~ 968 (1053)
.+.+ .|.|..+..++.+.+. ...-+..|+- +++++....-....-....++..+...+|++
T Consensus 143 ~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~-----~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~ 209 (372)
T PF12231_consen 143 NRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFP-----ILFPDLLSSAKDIRTKAISLLLEAKKCLGPN 209 (372)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhcchHHHHHHHHHHHHHHHHhChh
Confidence 6433 4567777777777766 3444555543 6666665432222222333445555566654
No 8
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=14.63 E-value=2.2e+02 Score=34.04 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=33.1
Q ss_pred HHHHHHHhhccCCCC------CCCchhhhhhcC---CCCCCCCChHHHHHHHHHHHhcc
Q 001558 623 KLIVRILNVFDLSKI------PFSESFPQHISS---SNPVMCPPLDYFATLLLGLVNNV 672 (1053)
Q Consensus 623 kLV~~Ilg~ld~~r~------~lSesf~~yl~~---~~~~~~P~~~Yf~~Li~rLv~~v 672 (1053)
|..-.=+|.=+...+ -|-++|-+|+.= =+.--+||.||+..|.+-+.+..
T Consensus 245 K~kYeKIGe~Kr~T~i~~Lc~g~P~efa~Yl~yvR~L~F~E~PDYdylr~Lf~dvldr~ 303 (449)
T KOG1165|consen 245 KEKYEKIGETKRSTPIEVLCEGFPEEFATYLRYVRRLDFFETPDYDYLRKLFDDVLDRL 303 (449)
T ss_pred HHHHHHhccccccCCHHHHHhcCHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHhc
Confidence 555555554333322 188899888652 22345899999999999888555
No 9
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=13.66 E-value=4.2e+02 Score=34.94 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=32.2
Q ss_pred hhhhhHHHHHhhcCCc-chHHHHHHHHHHHhcchhhhhh
Q 001558 908 EWLEGTHVIIKHLRPI-TSVAMLRIVFRIMGPLLPRLVN 945 (1053)
Q Consensus 908 ~~L~~~~~~i~~lrPv-~Te~QL~~~~~lvgP~L~Rf~~ 945 (1053)
..|...|+++|.+||+ ++++++.-+-..++|++.+|..
T Consensus 142 ~~L~~~h~Ifk~~r~l~Rsd~lf~ei~p~L~~~l~pfl~ 180 (947)
T COG5657 142 NSLRVLHHIFKRLRRLFRSDALFLEIAPVLLSILCPFLF 180 (947)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 5567788899999995 9999999998888888888754
No 10
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=13.47 E-value=1.2e+02 Score=29.59 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCcchhhhHhHhhhhhh
Q 001558 656 PPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 735 (1053)
Q Consensus 656 P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~~d~s~~~~~~~fp~~s~~~~~~~~~~dwrF~E~~nP~~~al~~L~tacIE 735 (1053)
.+.+|+.+++.+.+++. ...|.... .+. ..|.+...+ |...+ .|..++-|
T Consensus 38 ~d~~~~~~lv~gvlr~~-----------~~ld~ii~---------------~~l-~~~~~~~l~-~~~~~--iLria~~e 87 (130)
T cd00619 38 KVLPFALKLVRGVLENI-----------EEIDELIE---------------KHL-RNWSLDRLA-IVERA--ILRLAVYE 87 (130)
T ss_pred hHHHHHHHHHHHHHHhH-----------HHHHHHHH---------------HHc-cCCCHHHhh-HHHHH--HHHHHHHH
Confidence 45778888888887555 22333211 011 346554444 55555 45899999
Q ss_pred hhcCC-CCHHHHHHHHHHHhhh
Q 001558 736 ILSLP-VSASQIVSSLVQIVVN 756 (1053)
Q Consensus 736 LLsLP-~~p~~vv~aLvdvv~~ 756 (1053)
++-+. .|+..++|--|+++-+
T Consensus 88 l~~~~~~p~~~vinEaV~lak~ 109 (130)
T cd00619 88 LLFLPDVPHPVVINEAIELAKR 109 (130)
T ss_pred HHhCCCCCCcchHHHHHHHHHH
Confidence 99998 8999999999999964
Done!