Query 001558
Match_columns 1053
No_of_seqs 60 out of 62
Neff 3.9
Searched_HMMs 13730
Date Tue Mar 26 17:51:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001558.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_854-858//hhsearch_scop/001558hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3buxb2 a.48.1.1 (B:48-177) N- 12.3 18 0.0013 12.1 -0.3 26 370-395 15-41 (130)
2 d1ey1a_ a.79.1.1 (A:) Antiterm 9.2 34 0.0025 10.3 4.9 102 623-756 11-113 (139)
3 d1yxba1 a.204.1.4 (A:4-91) Pho 6.1 50 0.0037 9.3 -0.2 18 981-998 60-78 (88)
4 d1sqga1 a.79.1.3 (A:5-144) Rib 5.1 69 0.005 8.4 0.7 97 624-755 6-103 (140)
5 d1k9xa_ d.92.1.5 (A:) Thermost 4.8 74 0.0054 8.2 1.0 40 913-956 336-378 (497)
6 d1y6xa1 a.204.1.4 (A:7-93) Pho 4.3 67 0.0049 8.5 -0.5 19 980-998 59-78 (87)
7 d1eyva_ a.79.1.1 (A:) Antiterm 4.1 90 0.0065 7.7 3.7 72 655-756 41-113 (131)
8 d1hzfa_ a.102.4.4 (A:) C4adg f 4.0 93 0.0068 7.6 3.8 64 324-388 3-68 (326)
9 d1bm9a_ a.4.5.7 (A:) Replicati 3.9 95 0.0069 7.5 4.9 45 571-617 16-63 (120)
10 d1tzva_ a.79.1.1 (A:) Antiterm 3.8 98 0.0071 7.4 4.4 103 623-756 10-113 (141)
No 1
>d3buxb2 a.48.1.1 (B:48-177) N-terminal domain of cbl (N-cbl) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.30 E-value=18 Score=12.07 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHCC-CCCCCHHHHHHHH
Q ss_conf 9999999985025-9999814487542
Q 001558 370 AETTVINQCTQLL-SPSADPTYVKTYL 395 (1053)
Q Consensus 370 l~~tV~~e~~~~~-s~s~e~~~v~~~i 395 (1053)
++.+|...|++.. ..-|.|-|+.|++
T Consensus 15 lldkv~~lCq~Prl~LKnSPP~ilDiL 41 (130)
T d3buxb2 15 LMDKVVRLCQNPKLALKNSPPYILDLL 41 (130)
T ss_dssp HHHHHHHHHTCGGGCCCSCSSCHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 999999873397644578995288872
No 2
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=9.22 E-value=34 Score=10.34 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=64.5
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999984215789989910332102899998999578999999998500344446898888654566788999988778
Q 001558 623 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQ 702 (1053)
Q Consensus 623 kLV~~Ilg~ld~~r~~lSesf~~yl~~~~~~~~P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~~d~s~~~~~~~fp~~s~ 702 (1053)
.+++.++-+.+..+..+.+...++....+ .-..|..|+..|+.+...+. ...|.... .
T Consensus 11 ~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~gv~~~~-----------~~id~~I~----~------ 68 (139)
T d1ey1a_ 11 ECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT-----------AYLDGLMK----P------ 68 (139)
T ss_dssp HHHHHHHHHHHHHCCCSHHHHHHHHHTTT-SSSCCCHHHHHHHHHHHHHH-----------HHHHHHHT----T------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH-----------HHHHHHHH----H------
T ss_conf 99999999998369999999999988345-43145899999999999837-----------88999999----9------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
Q ss_conf 99998877784323479952025676755445240599-8978999888887660
Q 001558 703 SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP-VSASQIVSSLVQIVVN 756 (1053)
Q Consensus 703 ~~~~~~~~~dwrF~E~~nP~~~al~~L~tacIELLsLP-~~p~~iv~aLidiv~~ 756 (1053)
+ .+|.+...+ +...+. |..++.|++-++ +|+..+++.-|+++-+
T Consensus 69 -----~--l~~~~~r~~-~~~~~I--Lr~a~~El~~~~~~p~~viInE~Velak~ 113 (139)
T d1ey1a_ 69 -----Y--LSRLLEELG-QVEKAV--LRIALYELSKRSDVPYKVAINEAIELAKS 113 (139)
T ss_dssp -----C--CCSCTTTSC-HHHHHH--HHHHHHHHHSCSSCCSHHHHHHHHHHTTT
T ss_pred -----H--HHHHHHHCC-HHHHHH--HHHHHHHHHHCCCCCCEEHHHHHHHHHHH
T ss_conf -----8--886487537-678999--99999999971377761259999999999
No 3
>d1yxba1 a.204.1.4 (A:4-91) Phosphoribosyl-ATP pyrophosphatase HisE {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.07 E-value=50 Score=9.28 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=9.2
Q ss_pred HHHHHHHHEE-EEEECCCC
Q ss_conf 5566241002-47611587
Q 001558 981 ADLIDFLHHV-VHYEGQGG 998 (1053)
Q Consensus 981 d~IcDFlyHi-ym~~G~~~ 998 (1053)
.-.+|++||. ++...+|.
T Consensus 60 ~EaADLlyHllVll~~~gi 78 (88)
T d1yxba1 60 EEISQLLYHVQVMMVARGI 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999998799
No 4
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.07 E-value=69 Score=8.40 Aligned_cols=97 Identities=8% Similarity=0.129 Sum_probs=52.5
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 9999984215789989910332102899998999578999999998500344446898888654566-788999988778
Q 001558 624 LIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASL-RAPHNKSPMTSQ 702 (1053)
Q Consensus 624 LV~~Ilg~ld~~r~~lSesf~~yl~~~~~~~~P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~~d~s~-~~~~~~fp~~s~ 702 (1053)
+...++.++...+..+++.+.++...-+ ..|..|+.+|+.+...+- ...|... ++
T Consensus 6 ~A~q~L~~v~~~g~~l~~~l~~~~~~l~---~~dr~~~~~lv~gvlr~~-----------~~ld~~i~~~---------- 61 (140)
T d1sqga1 6 MAAQAVEQVVEQGQSLSNILPPLQQKVS---DKDKALLQELCFGVLRTL-----------SQLDWLINKL---------- 61 (140)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH----------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH----------
T ss_conf 9999999999819989999999998598---888999999999999869-----------9999999987----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99998877784323479952025676755445240599897899988888766
Q 001558 703 SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVV 755 (1053)
Q Consensus 703 ~~~~~~~~~dwrF~E~~nP~~~al~~L~tacIELLsLP~~p~~iv~aLidiv~ 755 (1053)
.++.+. -.++...+ .|..++-|++-+++|+..+++.-|.++-
T Consensus 62 --------l~~~~~-~~~~~~~~--iLr~a~~el~~~~~p~~avvneaV~lak 103 (140)
T d1sqga1 62 --------MARPMT-GKQRTVHY--LIMVGLYQLLYTRIPPHAALAETVEGAI 103 (140)
T ss_dssp --------CSSCCC-GGGHHHHH--HHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred --------HHCCCC-HHHHHHHH--HHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf --------230110-10099999--9999999997079998001699999999
No 5
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.81 E-value=74 Score=8.21 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=26.6
Q ss_pred HHHHHHHCCC--CCHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 7999732177--524779-9999997703103566321134788999
Q 001558 913 THVIIKHLRP--ITSVAM-LRIVFRIMGPLLPRLVNAHTLFNKTLAL 956 (1053)
Q Consensus 913 ~~~~i~~lrP--v~Te~Q-L~~~~~lvgP~L~Rf~~~r~~~~~~l~~ 956 (1053)
+.+.+...+| |++||+ +-|-+||| -||..||.++.-++.+
T Consensus 336 ~y~~~n~v~p~~IRveADE~ty~lHi~----lR~eiEk~li~g~l~v 378 (497)
T d1k9xa_ 336 VYLYFNIVRPDFIRTEADVVTYNFHIL----LRFKLERLMVSEEIKA 378 (497)
T ss_dssp HHHHHTCCCCCSCGGGCCTTTHHHHHH----HHHHHHHHHHHSCCCG
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCH
T ss_conf 998753317647889888765227899----9999999998499987
No 6
>d1y6xa1 a.204.1.4 (A:7-93) Phosphoribosyl-ATP pyrophosphatase HisE {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.28 E-value=67 Score=8.48 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=11.2
Q ss_pred HHHHHHHHHEE-EEEECCCC
Q ss_conf 35566241002-47611587
Q 001558 980 IADLIDFLHHV-VHYEGQGG 998 (1053)
Q Consensus 980 id~IcDFlyHi-ym~~G~~~ 998 (1053)
+...+|++||. ++...+|.
T Consensus 59 i~EaADLlyHllVlL~~~~i 78 (87)
T d1y6xa1 59 AEEISQLLYWTQVLMISRGL 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999998799
No 7
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.11 E-value=90 Score=7.67 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99957899999999850034444689888865456678899998877899998877784323479952025676755445
Q 001558 655 CPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVI 734 (1053)
Q Consensus 655 ~P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~~d~s~~~~~~~fp~~s~~~~~~~~~~dwrF~E~~nP~~~al~~L~tacI 734 (1053)
..+.+|+..++.+..++. +..|.... .+. .+|.+.... |...+.+ -.+..
T Consensus 41 ~~~~~~~~~l~~gv~~~~-----------~~id~~I~---------------~~l-~~~~~~~l~-~i~~~iL--r~a~~ 90 (131)
T d1eyva_ 41 ARLHPYTAAVARGVSEHA-----------AHIDDLIT---------------AHL-RGWTLDRLP-AVDRAIL--RVSVW 90 (131)
T ss_dssp CCCCHHHHHHHHHHHHTH-----------HHHHHHHH---------------TTS-TTCCGGGSC-HHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHH---------------HHH-HHHHHHHHH-HHHHHHH--HHHHH
T ss_conf 789999999999999959-----------99999999---------------860-124787753-9999999--99999
Q ss_pred HHHCCC-CCHHHHHHHHHHHHHH
Q ss_conf 240599-8978999888887660
Q 001558 735 EILSLP-VSASQIVSSLVQIVVN 756 (1053)
Q Consensus 735 ELLsLP-~~p~~iv~aLidiv~~ 756 (1053)
|++-++ +|...+++.-|+++-.
T Consensus 91 El~~~~~~p~~viInE~V~lak~ 113 (131)
T d1eyva_ 91 ELLHAADVPEPVVVDEAVQLAKE 113 (131)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99864569951578999999999
No 8
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.00 E-value=93 Score=7.58 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCCCCHHHHCCCCH-H-HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 999999860888884355402938-8-9999700478887415539999999999985025999981
Q 001558 324 TMLEQIMATSQHTWSEKTLRYFPS-L-LRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADP 388 (1053)
Q Consensus 324 ~~L~~im~~tph~Ws~kTL~~FP~-~-L~~~~~~~~d~~~~~~~~~qql~~tV~~e~~~~~s~s~e~ 388 (1053)
+-|+.++ +.||+=.|+|+..|=| + +.++++..-.-.++.++.+++++..|..-++++.++++.+
T Consensus 3 ~~l~~L~-~yPyGC~EQt~s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~rl~~~Q~~d 68 (326)
T d1hzfa_ 3 GGVASLL-RLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKAD 68 (326)
T ss_dssp HHHHTTC-CCCCSSHHHHHHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7799998-58998299999999999999999998210111898899999999999999999850889
No 9
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=3.94 E-value=95 Score=7.53 Aligned_cols=45 Identities=11% Similarity=0.263 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHCCC---HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 36799999981594---114999998602122248763267888798641
Q 001558 571 VIPLIVYRLIENDA---MDSADRVLATYSSFLAYYPLRFSFVRDILAYFY 617 (1053)
Q Consensus 571 ViDivI~R~LE~~~---~k~le~LL~~~~~LYrYHd~PvTfly~tL~Yy~ 617 (1053)
-+-+.+.+.+|++. .+++|-|=.-|.| |-||| |-|=+|.+||-..
T Consensus 16 flKlYlit~~eq~r~YG~q~L~~Lr~eFk~-~Gy~P-~hsEiYraLHeL~ 63 (120)
T d1bm9a_ 16 FLKLYMITMTEQERLYGLKLLEVLRSEFKE-IGFKP-NHTEVYRSLHELL 63 (120)
T ss_dssp HHHHHHHHHHHTTCCBSTTHHHHHHHHHTT-TTCCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHH
T ss_conf 687654110350211279999999998785-38899-7789999999999
No 10
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
Probab=3.84 E-value=98 Score=7.44 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=57.7
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999984215789989910332102899998999578999999998500344446898888654566788999988778
Q 001558 623 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQ 702 (1053)
Q Consensus 623 kLV~~Ilg~ld~~r~~lSesf~~yl~~~~~~~~P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~~d~s~~~~~~~fp~~s~ 702 (1053)
.+++.+|=+.+-.+..-.+.+.+.....+ ....+.+|+.+|+.+...+. ...|.... +
T Consensus 10 ~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~lv~g~~~~~-----------~~id~~I~----~------ 67 (141)
T d1tzva_ 10 LAVFKALFQHEFRRDEDLEQILEEILDET-YDKKAKEDARRYIRGIKENL-----------SMIDDLIS----R------ 67 (141)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHCCTT-SCHHHHHHHHHHHHHHHHTH-----------HHHHHHHH----T------
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH-----------HHHHHHHH----H------
T ss_conf 99999999998449962999999998841-36667999999999999809-----------99999999----8------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
Q ss_conf 99998877784323479952025676755445240599-8978999888887660
Q 001558 703 SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP-VSASQIVSSLVQIVVN 756 (1053)
Q Consensus 703 ~~~~~~~~~dwrF~E~~nP~~~al~~L~tacIELLsLP-~~p~~iv~aLidiv~~ 756 (1053)
+. .+|.+...+ +...+. |..++.|++-.+ +|+..+++--|+++-+
T Consensus 68 -----~~-~~~~~~rl~-~~~~~i--Lr~a~~El~~~~~~p~~v~InEaVelak~ 113 (141)
T d1tzva_ 68 -----YL-EKWSLNRLS-VVDRNV--LRLATYELLFEKDIPIEVTIDEAIEIAKR 113 (141)
T ss_dssp -----TC-SSSCGGGSC-HHHHHH--HHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred -----HC-CCCCHHHHH-HHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf -----52-158738888-899999--99999999853333035899999999998
Done!