BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001559
(1053 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FF9|A Chain A, Apo Saccharopine Reductase
pdb|1E5Q|A Chain A, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|B Chain B, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|C Chain C, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|D Chain D, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|E Chain E, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|F Chain F, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|G Chain G, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|H Chain H, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5L|A Chain A, Apo Saccharopine Reductase From Magnaporthe Grisea
pdb|1E5L|B Chain B, Apo Saccharopine Reductase From Magnaporthe Grisea
Length = 450
Score = 266 bits (680), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 248/480 (51%), Gaps = 35/480 (7%)
Query: 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE 632
T SVL++G+G V RP ++L G I+V VA L+ A++
Sbjct: 2 ATKSVLMLGSGFVTRPTLDVLTDSG--------------------IKVTVACRTLESAKK 41
Query: 633 VIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692
+ G+ ++ + LDV+D +L +++ ++VISL+P + H V + I KKH+VT SY+
Sbjct: 42 LSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYV 101
Query: 693 DDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGXXXX 752
+M +LD+ AK AGIT++ E+GLDPGIDH+ A+K I H GKIK+F SYCGG
Sbjct: 102 SPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAP 161
Query: 753 XXXXXXXXYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALE 812
YKFSWS G + A RN A + +GK V G L +A+ + I P FA
Sbjct: 162 ESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFI--YPGFAFV 219
Query: 813 CLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGP 872
PNR+S Y + Y I EA I RGTLRY+GF + + L IGF S E P LK+
Sbjct: 220 AYPNRDSTPYKERYQI-PEADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAI-- 276
Query: 873 TFRMFLCEILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTE 932
++ +I+K S E++I I+S + E + + +LG+ +
Sbjct: 277 PWKEATQKIVKASSA-------SEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKK 329
Query: 933 IPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMK 992
I + C +EEK+ + E D+V+L H+ E+E DG E ++L E+G
Sbjct: 330 ITPRGNA-LDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGS-RETRTSSLCEYGAPI 387
Query: 993 NGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDML-QAYGIKLVEK 1051
SAMA VG+P +A +L I RGVL P+ ++ P + L + YGI+ EK
Sbjct: 388 GSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEK 447
>pdb|2AXQ|A Chain A, Apo Histidine-Tagged Saccharopine Dehydrogenase (L-Glu
Forming) From Saccharomyces Cerevisiae
Length = 467
Score = 252 bits (644), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 249/478 (52%), Gaps = 38/478 (7%)
Query: 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE 635
+VL++G+G V +P + LA+ +DI V VA L +A+ + +
Sbjct: 25 NVLLLGSGFVAQPVIDTLAA-------------------NDDINVTVACRTLANAQALAK 65
Query: 636 GIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDS 695
++A+ LDV+D +L K ++ ++VISL+P + H V + I K +VT+SYI +
Sbjct: 66 P-SGSKAISLDVTDDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPA 124
Query: 696 MSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGXXXXXXX 755
+ +L+ + AGIT++ E+GLDPGIDH+ A+K I+ H GK+KSF SYCGG
Sbjct: 125 LRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEVHRAGGKLKSFLSYCGGLPAPEDS 184
Query: 756 XXXXXYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLP 815
YKFSWS G + A RN A Y +GK V + L +A+ + I P +A C P
Sbjct: 185 DNPLGYKFSWSSRGVLLALRNSAKYWKDGKIETVSSEDLMATAKPYFI--YPGYAFVCYP 242
Query: 816 NRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFR 875
NR+S ++ D+Y I EA T+ RGTLRY+GF E + L +G + + + +
Sbjct: 243 NRDSTLFKDLYHI-PEAETVIRGTLRYQGFPEFVKALVDMGMLKDDANEIFSK------P 295
Query: 876 MFLCEILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPA 935
+ E LK Q +G ++++ I S K+ E + +LGL +I
Sbjct: 296 IAWNEALK---QYLGAKSTSKEDLIASIDSKATWKDDEDRERILSGFAWLGLFSDAKITP 352
Query: 936 SCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGK 995
+ C +EE + Y E DMV+L H+ +E+ DG +E +TL+++GK+
Sbjct: 353 RGNA-LDTLCARLEELMQYEDNERDMVVLQHKFGIEWADGT-TETRTSTLVDYGKVGG-- 408
Query: 996 MISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQ-AYGIKLVEKS 1052
S+MA TVG P IA +L IK G+L P PE+ P + L+ YGI L EK+
Sbjct: 409 -YSSMAATVGYPVAIATKFVLDGTIKGPGLLAPYSPEINDPIMKELKDKYGIYLKEKT 465
>pdb|3ABI|A Chain A, Crystal Structure Of L-Lysine Dehydrogenase From
Hyperthermophilic Archaeon Pyrococcus Horikoshii
pdb|3ABI|B Chain B, Crystal Structure Of L-Lysine Dehydrogenase From
Hyperthermophilic Archaeon Pyrococcus Horikoshii
Length = 365
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 124/289 (42%), Gaps = 45/289 (15%)
Query: 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE 635
VLI+GAG + R A ++ +++ V + + ++ E+V E
Sbjct: 18 KVLILGAGNIGRAIA---------------------WDLKDEFDVYIGDVNNENLEKVKE 56
Query: 636 GIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDS 695
A +++D S+ L + + + E+VI LP A I+ K +V S++ ++
Sbjct: 57 ---FATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSFMPEN 113
Query: 696 MSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGXXXXXXX 755
+L ++A+ A +TI+ + G PG+ +++ ++ +++G I Y GG
Sbjct: 114 PLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQELDLKEGYI-----YVGG--LPKDP 166
Query: 756 XXXXXYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIA--DLPAFALEC 813
YK +WSP I PA + NGK +VD S +K +I + AF +
Sbjct: 167 KPPLYYKITWSPRDLIEEYTRPARVIRNGKVSKVDPLS---EVKKVKIGKFEFEAFISDG 223
Query: 814 LPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAET 862
L + + + + TLR+ G E + L +GFF E
Sbjct: 224 LRSMLETI---------NSERLEEWTLRWPGHLEKIKVLRELGFFKPEN 263
>pdb|2Q99|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cerevisiae
Length = 381
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 20 ERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQI-----SEDLSE 74
E RA LTP+ +L+ G +I V+ S + + Y G I +
Sbjct: 24 EARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPR 77
Query: 75 CGLVLGIKQ-PKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNG 133
+++G+K+ P+ + + F+H +K Q +L + + +LYD E + D G
Sbjct: 78 DRIIIGLKEXPETDTFPLVHEHIQFAHCYKDQAGWQNVLXRFIKGHGTLYDLEFLENDQG 137
Query: 134 RRLLAFGKFAGRAG 147
RR+ AFG +AG AG
Sbjct: 138 RRVAAFGFYAGFAG 151
>pdb|2QRJ|A Chain A, Crystal Structure Of Sulfate-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
pdb|2QRK|A Chain A, Crystal Structure Of Amp-Bound Saccharopine Dehydrogenase
(L-Lys Forming) From Saccharomyces Cerevisiae
pdb|2QRL|A Chain A, Crystal Structure Of Oxalylglycine-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
Length = 394
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 20 ERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQI-----SEDLSE 74
E RA LTP+ +L+ G +I V+ S + + Y G I +
Sbjct: 37 EARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPR 90
Query: 75 CGLVLGIKQ-PKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNG 133
+++G+K+ P+ + + F+H +K Q +L + + +LYD E + D G
Sbjct: 91 DRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLEFLENDQG 150
Query: 134 RRLLAFGKFAGRAG 147
RR+ AFG +AG AG
Sbjct: 151 RRVAAFGFYAGFAG 164
>pdb|3UGK|A Chain A, Crystal Structure Of C205s Mutant And Saccharopine
Dehydrogenase From Saccharomyces Cerevisiae.
pdb|3UH1|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cerevisiae With Bound Saccharopine And
Nadh
pdb|3UHA|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad.
pdb|3UHA|B Chain B, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad
Length = 373
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 20 ERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQI-----SEDLSE 74
E RA LTP+ +L+ G +I V+ S + + Y G I +
Sbjct: 16 EARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPR 69
Query: 75 CGLVLGIKQ-PKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNG 133
+++G+K+ P+ + + F+H +K Q +L + + +LYD E + D G
Sbjct: 70 DRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLEFLENDQG 129
Query: 134 RRLLAFGKFAGRAG 147
RR+ AFG +AG AG
Sbjct: 130 RRVAAFGFYAGFAG 143
>pdb|3MGJ|A Chain A, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a.
pdb|3MGJ|B Chain B, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a
Length = 118
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 471 VSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQII 530
+ L GH+ D ++ + D I GG + +++ ++G+ S++++ V D +D+I+
Sbjct: 6 IELRGHIIDSLILPKVFDKILDXGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEIL 65
Query: 531 DSLTSLA 537
+ L L
Sbjct: 66 NELRDLG 72
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 31/146 (21%)
Query: 88 MILPDK---------AYAFFSHTHKAQRENMPLL----------DKILAERVSLYDYELI 128
+ LPDK A FSH K+ +E ++ D LA+R+ LYDY
Sbjct: 88 LALPDKSVDGVISILAIHHFSHLEKSFQEXQRIIRDGTIVLLTFDIRLAQRIWLYDYFPF 147
Query: 129 VGDNGRRLLAFGKFAG--------RAGMIDFL--HGLGQRYLSLGYSTPFLSLGASYM-- 176
+ ++ R L + R I FL H L + + + P L L A
Sbjct: 148 LWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPHDLSDLFAAAAWRRPELYLKAEVRAG 207
Query: 177 YSSLAAAKAAVISVGEEISTLGLPSG 202
SS A A ++ G E+ T L +G
Sbjct: 208 ISSFALANQDLVEKGLELLTADLNNG 233
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 618 IRVLVASLYLKDAEEVIEGIPNAEAVQL--DVSDHKSLCKCISQVEIVI 664
+R + + + EE+I+ + + L D++DH++L K I QV+IVI
Sbjct: 33 VRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81
>pdb|3FHN|A Chain A, Structure Of Tip20p
pdb|3FHN|B Chain B, Structure Of Tip20p
pdb|3FHN|C Chain C, Structure Of Tip20p
pdb|3FHN|D Chain D, Structure Of Tip20p
Length = 706
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 430 AHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLV----SLSGHLFDQFLINE 485
A LT+++ +P++ DS+ + N K K +++++ + + FDQ L+
Sbjct: 125 ALHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQRLATNWSNTFDQKLLEA 184
Query: 486 ALDIIEAAGGSFHLVKCQVGQSTEALSFSEL 516
D + A S LVKC ST+ S L
Sbjct: 185 QWDTQKFASTSVGLVKCLRENSTKLYQLSLL 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,848,400
Number of Sequences: 62578
Number of extensions: 1294191
Number of successful extensions: 2968
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2938
Number of HSP's gapped (non-prelim): 25
length of query: 1053
length of database: 14,973,337
effective HSP length: 109
effective length of query: 944
effective length of database: 8,152,335
effective search space: 7695804240
effective search space used: 7695804240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)