Query 001559
Match_columns 1053
No_of_seqs 540 out of 3688
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02819 lysine-ketoglutarate 100.0 7E-196 2E-200 1801.2 91.8 1037 3-1052 2-1041(1042)
2 KOG0172 Lysine-ketoglutarate r 100.0 1.3E-73 2.9E-78 623.5 24.3 441 574-1052 2-444 (445)
3 TIGR00561 pntA NAD(P) transhyd 100.0 6.1E-64 1.3E-68 586.0 29.1 354 8-440 1-370 (511)
4 COG0686 Ald Alanine dehydrogen 100.0 2.7E-61 5.9E-66 514.3 22.2 337 7-438 1-353 (371)
5 TIGR00518 alaDH alanine dehydr 100.0 4.9E-58 1.1E-62 526.7 28.3 339 7-439 1-353 (370)
6 COG3288 PntA NAD/NADP transhyd 100.0 1.4E-58 3.1E-63 492.6 14.2 343 8-434 1-356 (356)
7 PRK09424 pntA NAD(P) transhydr 100.0 9.9E-57 2.1E-61 527.6 25.1 355 7-440 1-371 (509)
8 COG1748 LYS9 Saccharopine dehy 100.0 7.2E-55 1.6E-59 493.2 34.1 374 574-1048 1-375 (389)
9 PF03435 Saccharop_dh: Sacchar 100.0 1.5E-52 3.3E-57 486.3 35.4 377 577-1048 1-385 (386)
10 PF05222 AlaDh_PNT_N: Alanine 100.0 8.3E-29 1.8E-33 245.8 9.6 126 10-146 1-136 (136)
11 PF01262 AlaDh_PNT_C: Alanine 100.0 1.6E-29 3.5E-34 260.6 4.1 162 191-384 6-168 (168)
12 COG0169 AroE Shikimate 5-dehyd 99.9 6.2E-28 1.4E-32 265.6 10.3 231 474-750 16-268 (283)
13 PRK12548 shikimate 5-dehydroge 99.9 1.6E-27 3.5E-32 266.2 12.3 231 475-749 20-277 (289)
14 PRK12749 quinate/shikimate deh 99.9 4E-27 8.6E-32 262.1 13.0 232 475-750 18-275 (288)
15 PRK14027 quinate/shikimate deh 99.9 4.5E-27 9.7E-32 260.9 12.3 233 475-750 15-271 (283)
16 PRK12549 shikimate 5-dehydroge 99.9 6.5E-27 1.4E-31 260.4 11.7 228 475-750 16-269 (284)
17 PRK00258 aroE shikimate 5-dehy 99.9 1.5E-26 3.2E-31 257.3 11.4 229 475-750 16-263 (278)
18 TIGR01809 Shik-DH-AROM shikima 99.9 1.3E-25 2.9E-30 249.8 12.7 231 475-750 16-273 (282)
19 TIGR00507 aroE shikimate 5-deh 99.9 2.1E-25 4.4E-30 247.2 11.1 226 475-750 11-256 (270)
20 PRK12550 shikimate 5-dehydroge 99.9 4.8E-25 1E-29 243.2 9.7 220 476-750 20-258 (272)
21 PRK09310 aroDE bifunctional 3- 99.9 1.5E-22 3.2E-27 240.4 12.1 217 475-748 226-456 (477)
22 PLN02520 bifunctional 3-dehydr 99.9 2.4E-22 5.2E-27 241.2 11.5 226 475-750 263-517 (529)
23 PRK08306 dipicolinate synthase 99.8 2.3E-19 5E-24 201.1 18.8 249 28-413 16-291 (296)
24 KOG2733 Uncharacterized membra 99.7 5.6E-16 1.2E-20 169.9 17.2 130 574-719 5-149 (423)
25 COG3268 Uncharacterized conser 99.6 3.6E-14 7.9E-19 154.9 21.1 185 572-791 4-202 (382)
26 KOG0172 Lysine-ketoglutarate r 99.1 1.4E-12 3.1E-17 145.0 -8.2 328 10-414 61-405 (445)
27 cd01065 NAD_bind_Shikimate_DH 99.1 4.7E-10 1E-14 113.7 10.0 128 572-730 17-148 (155)
28 PF04455 Saccharop_dh_N: LOR/S 99.0 1.9E-10 4E-15 107.9 3.2 75 466-540 1-75 (103)
29 PRK14192 bifunctional 5,10-met 98.9 4.1E-09 8.8E-14 117.5 10.0 154 488-693 56-234 (283)
30 TIGR01921 DAP-DH diaminopimela 98.8 2.8E-08 6.1E-13 112.0 14.2 144 574-750 3-151 (324)
31 PF01488 Shikimate_DH: Shikima 98.8 8.9E-09 1.9E-13 102.7 8.6 98 571-691 9-110 (135)
32 PF08501 Shikimate_dh_N: Shiki 98.8 2.2E-09 4.9E-14 98.0 2.9 68 475-545 7-82 (83)
33 PRK13304 L-aspartate dehydroge 98.8 7.3E-08 1.6E-12 107.0 15.4 141 574-748 1-146 (265)
34 PRK13302 putative L-aspartate 98.7 1.4E-07 3E-12 105.1 14.7 140 573-746 5-147 (271)
35 TIGR02853 spore_dpaA dipicolin 98.6 1.3E-06 2.8E-11 98.1 18.0 137 202-409 148-286 (287)
36 PRK00048 dihydrodipicolinate r 98.6 2.1E-07 4.6E-12 102.8 10.2 132 574-732 1-135 (257)
37 TIGR02853 spore_dpaA dipicolin 98.5 7.1E-07 1.5E-11 100.2 13.6 116 571-715 148-263 (287)
38 cd01078 NAD_bind_H4MPT_DH NADP 98.5 5.7E-07 1.2E-11 95.1 11.3 107 571-697 25-136 (194)
39 PF01408 GFO_IDH_MocA: Oxidore 98.5 1.7E-06 3.7E-11 83.7 12.7 113 575-713 1-119 (120)
40 COG0673 MviM Predicted dehydro 98.5 2.1E-06 4.7E-11 98.1 15.3 146 573-747 2-156 (342)
41 PF03446 NAD_binding_2: NAD bi 98.4 1.1E-06 2.4E-11 90.5 10.3 110 574-712 1-117 (163)
42 PRK11579 putative oxidoreducta 98.4 6.8E-06 1.5E-10 94.8 16.4 142 574-747 4-153 (346)
43 PRK08306 dipicolinate synthase 98.4 3.6E-06 7.7E-11 95.0 13.4 115 572-715 150-264 (296)
44 PRK13303 L-aspartate dehydroge 98.3 5.2E-06 1.1E-10 92.3 12.0 125 574-724 1-130 (265)
45 TIGR00036 dapB dihydrodipicoli 98.3 3.9E-06 8.5E-11 93.3 10.9 126 575-724 2-135 (266)
46 COG2084 MmsB 3-hydroxyisobutyr 98.2 5.8E-06 1.3E-10 92.0 11.2 110 575-712 1-118 (286)
47 cd05311 NAD_bind_2_malic_enz N 98.2 6.9E-06 1.5E-10 89.2 10.0 121 571-717 22-154 (226)
48 PRK10206 putative oxidoreducta 98.1 1.9E-05 4.1E-10 91.1 13.5 143 575-747 2-153 (344)
49 PF03807 F420_oxidored: NADP o 98.1 1.8E-05 3.9E-10 73.7 10.6 91 576-690 1-94 (96)
50 PRK08618 ornithine cyclodeamin 98.1 9.7E-06 2.1E-10 92.8 10.0 105 573-702 126-233 (325)
51 COG1712 Predicted dinucleotide 98.1 5.4E-05 1.2E-09 80.1 13.2 138 575-745 1-142 (255)
52 COG0373 HemA Glutamyl-tRNA red 98.0 2.2E-05 4.8E-10 91.2 10.9 96 571-691 175-275 (414)
53 PF13460 NAD_binding_10: NADH( 98.0 3.2E-05 7E-10 80.2 11.1 71 577-671 1-72 (183)
54 TIGR01761 thiaz-red thiazoliny 98.0 5.9E-05 1.3E-09 86.6 13.3 120 574-721 3-128 (343)
55 PRK13940 glutamyl-tRNA reducta 98.0 2.4E-05 5.1E-10 92.2 9.8 95 572-691 179-274 (414)
56 PRK06141 ornithine cyclodeamin 98.0 2.2E-05 4.8E-10 89.4 9.2 117 572-712 123-241 (314)
57 PRK08291 ectoine utilization p 98.0 1.6E-05 3.5E-10 91.2 8.0 136 540-703 98-240 (330)
58 PRK09496 trkA potassium transp 97.9 5.6E-05 1.2E-09 90.2 12.7 191 491-711 146-347 (453)
59 PRK08223 hypothetical protein; 97.9 5.5E-05 1.2E-09 84.4 11.6 114 572-690 25-151 (287)
60 KOG2741 Dimeric dihydrodiol de 97.9 0.00016 3.5E-09 81.3 15.2 152 573-752 5-165 (351)
61 TIGR00872 gnd_rel 6-phosphoglu 97.9 8.2E-05 1.8E-09 84.2 13.2 119 575-720 1-123 (298)
62 KOG0409 Predicted dehydrogenas 97.9 5.2E-05 1.1E-09 83.5 10.7 113 571-712 32-153 (327)
63 CHL00194 ycf39 Ycf39; Provisio 97.9 7.3E-05 1.6E-09 85.0 12.6 72 575-668 1-73 (317)
64 PRK13301 putative L-aspartate 97.9 9.4E-05 2E-09 81.2 12.6 127 574-727 2-134 (267)
65 PRK11559 garR tartronate semia 97.9 6.2E-05 1.3E-09 84.9 11.6 111 574-713 2-120 (296)
66 PLN02350 phosphogluconate dehy 97.9 8.1E-05 1.8E-09 89.2 12.3 125 573-719 5-136 (493)
67 TIGR02992 ectoine_eutC ectoine 97.9 3.9E-05 8.4E-10 87.9 9.2 127 552-703 104-237 (326)
68 PRK06270 homoserine dehydrogen 97.9 0.00012 2.7E-09 84.3 13.2 137 575-721 3-161 (341)
69 TIGR00300 conserved hypothetic 97.9 1.1E-05 2.4E-10 91.1 4.2 70 466-535 1-70 (407)
70 PRK15461 NADH-dependent gamma- 97.8 8.7E-05 1.9E-09 83.9 11.3 109 575-712 2-118 (296)
71 COG1915 Uncharacterized conser 97.8 1.4E-05 3E-10 86.8 4.0 69 467-535 2-70 (415)
72 PRK07340 ornithine cyclodeamin 97.8 3.1E-05 6.7E-10 87.8 7.1 109 572-706 123-233 (304)
73 PRK09599 6-phosphogluconate de 97.8 0.00024 5.1E-09 80.5 14.2 118 575-719 1-123 (301)
74 cd05213 NAD_bind_Glutamyl_tRNA 97.8 0.00012 2.5E-09 83.5 11.5 95 572-691 176-274 (311)
75 PF00899 ThiF: ThiF family; I 97.8 0.00017 3.7E-09 71.8 11.2 99 573-691 1-125 (135)
76 TIGR02356 adenyl_thiF thiazole 97.8 0.00018 4E-09 76.8 12.2 100 572-690 19-143 (202)
77 TIGR01505 tartro_sem_red 2-hyd 97.8 0.00011 2.4E-09 82.7 11.0 108 576-712 1-116 (291)
78 PRK12490 6-phosphogluconate de 97.8 0.00021 4.6E-09 80.8 13.0 112 575-712 1-117 (299)
79 PRK00436 argC N-acetyl-gamma-g 97.8 4.8E-05 1E-09 87.7 7.7 95 574-690 2-99 (343)
80 TIGR02355 moeB molybdopterin s 97.8 0.00021 4.5E-09 78.4 12.3 114 572-690 22-146 (240)
81 COG4091 Predicted homoserine d 97.8 0.00041 9E-09 77.5 14.3 131 573-721 16-166 (438)
82 COG0569 TrkA K+ transport syst 97.8 0.00026 5.6E-09 76.9 12.7 112 575-709 1-115 (225)
83 PF01113 DapB_N: Dihydrodipico 97.7 1.9E-05 4.2E-10 77.7 3.5 109 575-707 1-117 (124)
84 PLN03209 translocon at the inn 97.7 0.00023 4.9E-09 86.3 12.6 78 572-669 78-169 (576)
85 PTZ00142 6-phosphogluconate de 97.7 0.00025 5.5E-09 84.8 12.8 124 575-721 2-132 (470)
86 PRK08762 molybdopterin biosynt 97.7 0.00017 3.8E-09 84.2 10.9 100 572-690 133-257 (376)
87 TIGR03855 NAD_NadX aspartate d 97.7 0.00024 5.1E-09 77.3 10.9 112 619-746 4-120 (229)
88 PRK06349 homoserine dehydrogen 97.7 0.00019 4.1E-09 85.2 10.9 126 574-717 3-133 (426)
89 PRK05690 molybdopterin biosynt 97.7 0.00038 8.3E-09 76.6 12.5 100 572-690 30-154 (245)
90 PF01118 Semialdhyde_dh: Semia 97.7 0.00011 2.4E-09 71.9 7.4 94 576-691 1-98 (121)
91 TIGR00518 alaDH alanine dehydr 97.7 0.00032 6.9E-09 81.8 12.4 98 573-692 166-269 (370)
92 PRK12475 thiamine/molybdopteri 97.6 0.00038 8.2E-09 80.1 12.6 99 572-690 22-148 (338)
93 PRK07688 thiamine/molybdopteri 97.6 0.0004 8.7E-09 79.9 12.5 100 572-691 22-149 (339)
94 PLN02427 UDP-apiose/xylose syn 97.6 0.00035 7.7E-09 81.6 12.3 79 571-668 11-95 (386)
95 TIGR01692 HIBADH 3-hydroxyisob 97.6 0.00025 5.4E-09 79.8 10.4 106 579-713 1-114 (288)
96 cd00757 ThiF_MoeB_HesA_family 97.6 0.0005 1.1E-08 74.9 12.3 115 572-691 19-144 (228)
97 PLN00203 glutamyl-tRNA reducta 97.6 0.00037 8.1E-09 84.2 12.0 98 572-691 264-370 (519)
98 PRK05597 molybdopterin biosynt 97.6 0.0005 1.1E-08 79.7 12.6 100 572-690 26-150 (355)
99 COG0300 DltE Short-chain dehyd 97.6 0.00022 4.7E-09 78.8 9.0 81 572-672 4-97 (265)
100 PF05368 NmrA: NmrA-like famil 97.6 0.00034 7.3E-09 75.8 10.4 88 577-686 1-97 (233)
101 cd01075 NAD_bind_Leu_Phe_Val_D 97.6 0.00081 1.8E-08 71.8 12.8 115 571-716 25-141 (200)
102 PLN00141 Tic62-NAD(P)-related 97.6 0.00078 1.7E-08 73.9 13.1 80 571-670 14-96 (251)
103 COG2910 Putative NADH-flavin r 97.6 0.00028 6.2E-09 72.7 8.8 73 575-671 1-74 (211)
104 TIGR00873 gnd 6-phosphoglucona 97.5 0.00068 1.5E-08 81.2 13.4 123 576-721 1-129 (467)
105 TIGR01850 argC N-acetyl-gamma- 97.5 0.00014 3.1E-09 84.0 7.3 96 575-690 1-99 (346)
106 PRK11908 NAD-dependent epimera 97.5 0.0006 1.3E-08 78.4 12.2 76 574-669 1-78 (347)
107 PRK08374 homoserine dehydrogen 97.5 0.00066 1.4E-08 78.2 12.4 156 575-743 3-173 (336)
108 PRK06046 alanine dehydrogenase 97.5 0.00028 6E-09 80.9 9.1 116 572-712 127-245 (326)
109 PRK08644 thiamine biosynthesis 97.5 0.00096 2.1E-08 71.9 12.5 99 572-689 26-149 (212)
110 TIGR03589 PseB UDP-N-acetylglu 97.5 0.00081 1.8E-08 76.9 12.6 79 573-669 3-84 (324)
111 PLN02657 3,8-divinyl protochlo 97.5 0.0008 1.7E-08 79.1 12.8 79 571-669 57-146 (390)
112 PRK08328 hypothetical protein; 97.5 0.00092 2E-08 73.0 12.3 100 572-690 25-150 (231)
113 PRK07411 hypothetical protein; 97.5 0.00067 1.5E-08 79.6 11.9 114 572-690 36-160 (390)
114 TIGR02371 ala_DH_arch alanine 97.5 0.00031 6.6E-09 80.5 8.8 112 572-707 126-239 (325)
115 cd01483 E1_enzyme_family Super 97.5 0.0011 2.3E-08 66.7 11.7 97 576-691 1-122 (143)
116 PRK15059 tartronate semialdehy 97.5 0.00062 1.3E-08 76.9 11.1 108 575-712 1-116 (292)
117 PRK15116 sulfur acceptor prote 97.4 0.0021 4.7E-08 71.4 14.7 100 572-690 28-153 (268)
118 PRK06407 ornithine cyclodeamin 97.4 0.00036 7.7E-09 79.1 8.7 109 573-705 116-227 (301)
119 PRK05600 thiamine biosynthesis 97.4 0.00095 2.1E-08 77.8 12.3 100 572-690 39-163 (370)
120 TIGR03215 ac_ald_DH_ac acetald 97.4 0.00062 1.3E-08 76.3 10.3 93 575-690 2-95 (285)
121 cd00755 YgdL_like Family of ac 97.4 0.0021 4.6E-08 70.1 14.2 100 572-690 9-134 (231)
122 PRK06392 homoserine dehydrogen 97.4 0.0019 4.1E-08 73.9 14.4 128 575-716 1-144 (326)
123 PRK07878 molybdopterin biosynt 97.4 0.00088 1.9E-08 78.8 11.9 114 572-690 40-164 (392)
124 PRK08267 short chain dehydroge 97.4 0.00054 1.2E-08 75.2 9.4 77 574-670 1-88 (260)
125 PRK00045 hemA glutamyl-tRNA re 97.4 0.00084 1.8E-08 79.7 11.6 95 572-691 180-281 (423)
126 PF02254 TrkA_N: TrkA-N domain 97.4 0.0033 7.2E-08 60.4 13.7 108 577-710 1-112 (116)
127 cd01487 E1_ThiF_like E1_ThiF_l 97.4 0.0014 2.9E-08 68.5 11.5 94 576-688 1-119 (174)
128 PRK06476 pyrroline-5-carboxyla 97.4 0.00062 1.3E-08 75.3 9.5 92 575-690 1-93 (258)
129 PRK05447 1-deoxy-D-xylulose 5- 97.4 0.0015 3.2E-08 75.6 12.6 129 574-723 1-154 (385)
130 PRK07589 ornithine cyclodeamin 97.4 0.00056 1.2E-08 78.8 9.0 108 573-703 128-238 (346)
131 PLN02214 cinnamoyl-CoA reducta 97.3 0.0014 3E-08 75.6 12.2 79 572-670 8-92 (342)
132 PRK08300 acetaldehyde dehydrog 97.3 0.00095 2.1E-08 75.1 10.4 96 573-690 3-101 (302)
133 PRK07502 cyclohexadienyl dehyd 97.3 0.0016 3.4E-08 74.1 12.4 115 574-714 6-124 (307)
134 PF03447 NAD_binding_3: Homose 97.3 0.00022 4.9E-09 69.1 4.8 108 581-712 1-116 (117)
135 PRK06823 ornithine cyclodeamin 97.3 0.0007 1.5E-08 77.2 9.4 110 573-706 127-238 (315)
136 COG0460 ThrA Homoserine dehydr 97.3 0.0011 2.4E-08 75.2 10.7 155 573-743 2-164 (333)
137 PRK04207 glyceraldehyde-3-phos 97.3 0.0009 2E-08 77.2 10.3 98 574-691 1-110 (341)
138 PLN02896 cinnamyl-alcohol dehy 97.3 0.00085 1.8E-08 77.4 10.1 79 571-669 7-89 (353)
139 PRK15181 Vi polysaccharide bio 97.3 0.0011 2.4E-08 76.4 11.1 78 572-669 13-100 (348)
140 PRK06196 oxidoreductase; Provi 97.3 0.00086 1.9E-08 76.2 9.9 77 573-669 25-109 (315)
141 PRK14982 acyl-ACP reductase; P 97.3 0.00032 6.9E-09 80.3 6.4 95 571-691 152-247 (340)
142 cd01486 Apg7 Apg7 is an E1-lik 97.3 0.0017 3.6E-08 72.9 11.8 109 576-689 1-139 (307)
143 PRK07680 late competence prote 97.3 0.00092 2E-08 74.6 9.8 94 575-691 1-97 (273)
144 TIGR01035 hemA glutamyl-tRNA r 97.3 0.0017 3.6E-08 77.1 12.5 95 572-691 178-278 (417)
145 PF02423 OCD_Mu_crystall: Orni 97.3 9.1E-05 2E-09 84.4 1.7 112 573-707 127-241 (313)
146 PRK14618 NAD(P)H-dependent gly 97.3 0.0011 2.3E-08 76.1 10.4 117 574-712 4-133 (328)
147 PF01210 NAD_Gly3P_dh_N: NAD-d 97.3 0.00061 1.3E-08 69.8 7.3 93 576-690 1-103 (157)
148 PRK07825 short chain dehydroge 97.3 0.00097 2.1E-08 73.8 9.4 77 574-670 5-89 (273)
149 cd01080 NAD_bind_m-THF_DH_Cycl 97.3 0.0007 1.5E-08 70.2 7.7 76 571-691 41-117 (168)
150 PF10727 Rossmann-like: Rossma 97.3 0.00048 1E-08 68.1 6.1 110 573-711 9-123 (127)
151 TIGR01381 E1_like_apg7 E1-like 97.3 0.0018 3.8E-08 79.0 12.0 114 572-690 336-480 (664)
152 PRK07634 pyrroline-5-carboxyla 97.2 0.0015 3.2E-08 71.6 10.4 92 574-690 4-99 (245)
153 PRK06182 short chain dehydroge 97.2 0.0014 3.1E-08 72.6 10.4 75 574-670 3-85 (273)
154 PRK07326 short chain dehydroge 97.2 0.0013 2.9E-08 70.7 9.8 76 574-669 6-92 (237)
155 PLN02858 fructose-bisphosphate 97.2 0.0014 3.1E-08 87.7 11.9 110 574-712 4-123 (1378)
156 COG2085 Predicted dinucleotide 97.2 0.00092 2E-08 70.9 8.1 91 574-691 1-94 (211)
157 PRK14852 hypothetical protein; 97.2 0.0022 4.7E-08 81.6 12.5 114 572-690 330-456 (989)
158 PRK07024 short chain dehydroge 97.2 0.0014 3E-08 72.0 9.8 76 574-669 2-88 (257)
159 PRK05866 short chain dehydroge 97.2 0.0013 2.9E-08 74.1 9.8 78 573-670 39-128 (293)
160 COG2423 Predicted ornithine cy 97.2 0.00062 1.4E-08 77.6 7.0 119 573-712 129-248 (330)
161 PRK06101 short chain dehydroge 97.2 0.0016 3.5E-08 70.8 10.0 74 575-668 2-80 (240)
162 PRK08265 short chain dehydroge 97.2 0.0014 3E-08 72.3 9.5 77 573-669 5-90 (261)
163 PRK10538 malonic semialdehyde 97.2 0.0016 3.6E-08 71.0 10.0 75 575-669 1-84 (248)
164 cd01492 Aos1_SUMO Ubiquitin ac 97.2 0.0029 6.3E-08 67.4 11.4 100 572-690 19-142 (197)
165 PRK05884 short chain dehydroge 97.2 0.0016 3.4E-08 70.3 9.6 74 575-669 1-79 (223)
166 TIGR03649 ergot_EASG ergot alk 97.2 0.0024 5.1E-08 71.3 11.3 90 576-690 1-104 (285)
167 PRK08219 short chain dehydroge 97.2 0.0015 3.3E-08 69.6 9.4 75 574-669 3-81 (227)
168 COG4221 Short-chain alcohol de 97.2 0.002 4.2E-08 69.9 10.0 81 574-674 6-96 (246)
169 PRK07454 short chain dehydroge 97.2 0.0015 3.3E-08 70.7 9.4 78 573-670 5-94 (241)
170 PLN02253 xanthoxin dehydrogena 97.2 0.0017 3.7E-08 72.1 10.1 77 573-669 17-104 (280)
171 KOG2017 Molybdopterin synthase 97.2 0.0013 2.8E-08 73.5 8.7 116 571-690 63-188 (427)
172 PRK12829 short chain dehydroge 97.2 0.0017 3.6E-08 71.1 9.8 79 572-670 9-97 (264)
173 cd01485 E1-1_like Ubiquitin ac 97.1 0.0039 8.4E-08 66.5 12.1 114 572-690 17-145 (198)
174 PRK08655 prephenate dehydrogen 97.1 0.0029 6.4E-08 75.4 12.4 112 575-715 1-117 (437)
175 PRK06194 hypothetical protein; 97.1 0.0012 2.5E-08 73.7 8.5 78 573-670 5-94 (287)
176 PRK07231 fabG 3-ketoacyl-(acyl 97.1 0.0013 2.9E-08 71.2 8.7 77 573-669 4-91 (251)
177 PRK14851 hypothetical protein; 97.1 0.0026 5.6E-08 79.4 12.2 113 572-690 41-167 (679)
178 PRK07877 hypothetical protein; 97.1 0.0024 5.2E-08 79.9 11.9 114 572-690 105-228 (722)
179 PRK05867 short chain dehydroge 97.1 0.0016 3.6E-08 71.1 9.4 78 573-670 8-97 (253)
180 TIGR03325 BphB_TodD cis-2,3-di 97.1 0.0017 3.8E-08 71.4 9.5 77 573-669 4-89 (262)
181 PRK07453 protochlorophyllide o 97.1 0.0018 4E-08 73.7 9.9 77 573-669 5-93 (322)
182 KOG1502 Flavonol reductase/cin 97.1 0.0018 3.9E-08 73.2 9.6 98 573-690 5-128 (327)
183 PRK00094 gpsA NAD(P)H-dependen 97.1 0.0016 3.4E-08 74.3 9.2 97 574-690 1-105 (325)
184 PRK06200 2,3-dihydroxy-2,3-dih 97.1 0.0019 4.1E-08 71.1 9.5 77 573-669 5-90 (263)
185 PRK05717 oxidoreductase; Valid 97.1 0.002 4.3E-08 70.6 9.6 80 571-670 7-95 (255)
186 PRK06482 short chain dehydroge 97.1 0.0022 4.7E-08 71.1 9.9 76 575-670 3-87 (276)
187 PRK09186 flagellin modificatio 97.1 0.0018 4E-08 70.5 9.2 76 573-668 3-92 (256)
188 PRK06180 short chain dehydroge 97.1 0.0024 5.2E-08 71.0 10.2 77 574-670 4-89 (277)
189 PRK07523 gluconate 5-dehydroge 97.1 0.0017 3.8E-08 70.9 8.8 79 572-670 8-98 (255)
190 PRK08340 glucose-1-dehydrogena 97.1 0.0022 4.8E-08 70.4 9.7 75 575-669 1-86 (259)
191 PF02826 2-Hacid_dh_C: D-isome 97.1 0.0012 2.6E-08 69.1 7.1 90 571-690 33-127 (178)
192 PRK08125 bifunctional UDP-gluc 97.1 0.0026 5.6E-08 79.9 11.4 77 572-668 313-391 (660)
193 PRK06813 homoserine dehydrogen 97.1 0.0028 6.1E-08 73.0 10.6 136 575-719 3-153 (346)
194 PRK05993 short chain dehydroge 97.1 0.0021 4.7E-08 71.5 9.5 75 574-670 4-87 (277)
195 PLN02858 fructose-bisphosphate 97.1 0.0025 5.4E-08 85.4 11.7 112 572-712 322-443 (1378)
196 PRK06138 short chain dehydroge 97.0 0.0023 5.1E-08 69.5 9.4 77 573-669 4-91 (252)
197 PRK06153 hypothetical protein; 97.0 0.004 8.6E-08 72.0 11.4 113 572-691 174-299 (393)
198 PRK09496 trkA potassium transp 97.0 0.0047 1E-07 73.7 12.7 86 575-681 1-88 (453)
199 PRK07890 short chain dehydroge 97.0 0.0018 3.8E-08 70.8 8.4 77 573-669 4-92 (258)
200 PF00670 AdoHcyase_NAD: S-aden 97.0 0.0023 5.1E-08 65.6 8.5 95 571-695 20-115 (162)
201 PRK07102 short chain dehydroge 97.0 0.0023 4.9E-08 69.5 9.2 76 574-669 1-86 (243)
202 TIGR02354 thiF_fam2 thiamine b 97.0 0.0064 1.4E-07 65.0 12.1 26 572-597 19-44 (200)
203 PRK08339 short chain dehydroge 97.0 0.0025 5.4E-08 70.5 9.3 77 573-669 7-95 (263)
204 PRK07063 short chain dehydroge 97.0 0.0024 5.2E-08 70.1 9.1 77 573-669 6-96 (260)
205 PRK12491 pyrroline-5-carboxyla 97.0 0.003 6.6E-08 70.6 10.0 93 575-691 3-98 (272)
206 PRK06057 short chain dehydroge 97.0 0.0027 5.9E-08 69.5 9.5 76 573-669 6-89 (255)
207 PLN02650 dihydroflavonol-4-red 97.0 0.002 4.3E-08 74.3 8.8 77 573-669 4-87 (351)
208 PLN02986 cinnamyl-alcohol dehy 97.0 0.0018 3.9E-08 73.6 8.3 76 574-669 5-87 (322)
209 PLN02989 cinnamyl-alcohol dehy 97.0 0.0018 3.9E-08 73.7 8.2 76 574-669 5-87 (325)
210 PRK12429 3-hydroxybutyrate deh 97.0 0.003 6.4E-08 68.8 9.7 76 574-669 4-91 (258)
211 TIGR03026 NDP-sugDHase nucleot 97.0 0.0021 4.5E-08 76.1 9.1 77 575-671 1-88 (411)
212 PRK07814 short chain dehydroge 97.0 0.0035 7.6E-08 69.1 10.3 77 573-669 9-97 (263)
213 PRK06139 short chain dehydroge 97.0 0.003 6.6E-08 72.5 10.0 78 573-670 6-95 (330)
214 PLN02662 cinnamyl-alcohol dehy 97.0 0.0016 3.4E-08 73.8 7.6 76 574-669 4-86 (322)
215 smart00859 Semialdhyde_dh Semi 97.0 0.0018 4E-08 63.1 7.0 96 576-691 1-100 (122)
216 PRK07478 short chain dehydroge 97.0 0.0032 6.8E-08 68.9 9.6 77 573-669 5-93 (254)
217 PRK08309 short chain dehydroge 97.0 0.006 1.3E-07 63.9 11.2 91 575-685 1-101 (177)
218 PRK05854 short chain dehydroge 97.0 0.0033 7.1E-08 71.6 10.1 79 571-669 11-103 (313)
219 COG0002 ArgC Acetylglutamate s 97.0 0.002 4.3E-08 73.0 8.0 96 574-690 2-101 (349)
220 cd01484 E1-2_like Ubiquitin ac 97.0 0.0063 1.4E-07 66.5 11.7 95 576-689 1-122 (234)
221 PRK05876 short chain dehydroge 96.9 0.0023 4.9E-08 71.4 8.4 78 573-670 5-94 (275)
222 cd01489 Uba2_SUMO Ubiquitin ac 96.9 0.0042 9.2E-08 70.6 10.6 95 576-689 1-121 (312)
223 PRK07666 fabG 3-ketoacyl-(acyl 96.9 0.0028 6.1E-08 68.5 9.0 77 574-670 7-95 (239)
224 PRK12939 short chain dehydroge 96.9 0.0037 7.9E-08 67.8 9.8 77 573-669 6-94 (250)
225 PRK06172 short chain dehydroge 96.9 0.0025 5.3E-08 69.6 8.5 77 573-669 6-94 (253)
226 PRK06949 short chain dehydroge 96.9 0.0036 7.9E-08 68.3 9.7 78 572-669 7-96 (258)
227 PRK05872 short chain dehydroge 96.9 0.0035 7.5E-08 70.7 9.8 79 572-670 7-96 (296)
228 PRK11880 pyrroline-5-carboxyla 96.9 0.0037 8E-08 69.4 9.8 92 574-690 2-94 (267)
229 PRK07067 sorbitol dehydrogenas 96.9 0.0039 8.4E-08 68.3 9.9 77 573-669 5-90 (257)
230 PRK12826 3-ketoacyl-(acyl-carr 96.9 0.0041 9E-08 67.3 9.9 77 573-669 5-93 (251)
231 PRK05875 short chain dehydroge 96.9 0.0035 7.6E-08 69.4 9.5 77 573-669 6-96 (276)
232 PRK07677 short chain dehydroge 96.9 0.0029 6.3E-08 69.1 8.8 75 575-669 2-88 (252)
233 PF00106 adh_short: short chai 96.9 0.0021 4.5E-08 65.3 7.1 77 575-670 1-91 (167)
234 PRK09291 short chain dehydroge 96.9 0.0042 9.1E-08 67.8 9.8 77 574-670 2-84 (257)
235 PRK05693 short chain dehydroge 96.9 0.004 8.6E-08 69.0 9.7 75 574-670 1-83 (274)
236 PLN00198 anthocyanidin reducta 96.9 0.0029 6.4E-08 72.4 8.9 77 572-668 7-89 (338)
237 PRK07774 short chain dehydroge 96.9 0.0042 9.1E-08 67.5 9.7 77 573-669 5-93 (250)
238 PRK08177 short chain dehydroge 96.9 0.0034 7.4E-08 67.4 8.8 75 574-669 1-81 (225)
239 PRK08643 acetoin reductase; Va 96.9 0.0037 7.9E-08 68.4 9.2 76 574-669 2-89 (256)
240 PRK06197 short chain dehydroge 96.9 0.0036 7.9E-08 70.7 9.4 79 571-669 13-105 (306)
241 PRK07074 short chain dehydroge 96.9 0.0042 9.2E-08 67.9 9.7 76 574-669 2-87 (257)
242 PLN02695 GDP-D-mannose-3',5'-e 96.9 0.0047 1E-07 72.1 10.5 75 572-668 19-94 (370)
243 PRK07060 short chain dehydroge 96.9 0.0049 1.1E-07 66.6 10.0 77 573-670 8-88 (245)
244 PRK13394 3-hydroxybutyrate deh 96.9 0.0033 7.1E-08 68.8 8.7 78 573-670 6-95 (262)
245 PRK08277 D-mannonate oxidoredu 96.9 0.0039 8.4E-08 69.2 9.4 78 573-670 9-98 (278)
246 PRK07531 bifunctional 3-hydrox 96.8 0.0048 1E-07 74.8 10.6 115 575-710 5-135 (495)
247 PLN02688 pyrroline-5-carboxyla 96.8 0.0045 9.7E-08 68.7 9.6 91 575-690 1-95 (266)
248 PRK06179 short chain dehydroge 96.8 0.0029 6.3E-08 69.8 8.0 73 574-670 4-84 (270)
249 PRK07679 pyrroline-5-carboxyla 96.8 0.0058 1.2E-07 68.5 10.5 98 574-695 3-105 (279)
250 PRK12828 short chain dehydroge 96.8 0.0047 1E-07 66.2 9.4 77 573-669 6-92 (239)
251 PRK09260 3-hydroxybutyryl-CoA 96.8 0.0046 1E-07 69.6 9.7 78 575-672 2-94 (288)
252 TIGR03206 benzo_BadH 2-hydroxy 96.8 0.0047 1E-07 67.0 9.4 77 573-669 2-90 (250)
253 PRK07109 short chain dehydroge 96.8 0.0047 1E-07 71.0 9.9 78 573-670 7-96 (334)
254 PRK06500 short chain dehydroge 96.8 0.0056 1.2E-07 66.4 10.0 77 573-669 5-90 (249)
255 PRK07904 short chain dehydroge 96.8 0.004 8.7E-08 68.5 8.9 77 574-669 8-97 (253)
256 PRK07576 short chain dehydroge 96.8 0.004 8.8E-08 68.8 9.0 77 573-669 8-96 (264)
257 PF01073 3Beta_HSD: 3-beta hyd 96.8 0.0039 8.4E-08 70.0 8.9 107 578-711 1-111 (280)
258 PRK05653 fabG 3-ketoacyl-(acyl 96.8 0.0037 8E-08 67.3 8.5 76 574-669 5-92 (246)
259 PRK08263 short chain dehydroge 96.8 0.0049 1.1E-07 68.4 9.6 77 574-670 3-88 (275)
260 PRK08589 short chain dehydroge 96.8 0.0036 7.7E-08 69.5 8.5 76 573-669 5-92 (272)
261 PRK15057 UDP-glucose 6-dehydro 96.8 0.0078 1.7E-07 70.7 11.7 113 575-708 1-136 (388)
262 COG0240 GpsA Glycerol-3-phosph 96.8 0.0065 1.4E-07 68.9 10.3 97 574-690 1-105 (329)
263 PRK12320 hypothetical protein; 96.8 0.007 1.5E-07 75.6 11.6 90 575-690 1-101 (699)
264 TIGR03466 HpnA hopanoid-associ 96.8 0.0023 5.1E-08 72.3 7.0 73 575-669 1-74 (328)
265 PLN02256 arogenate dehydrogena 96.8 0.0079 1.7E-07 68.4 11.2 91 572-692 34-129 (304)
266 PRK08085 gluconate 5-dehydroge 96.8 0.004 8.7E-08 68.0 8.6 77 573-669 8-96 (254)
267 cd05211 NAD_bind_Glu_Leu_Phe_V 96.8 0.013 2.8E-07 63.4 12.2 118 571-713 20-149 (217)
268 PRK07417 arogenate dehydrogena 96.8 0.0054 1.2E-07 68.8 9.7 92 575-694 1-95 (279)
269 PRK07062 short chain dehydroge 96.8 0.0043 9.3E-08 68.3 8.7 79 572-670 6-98 (265)
270 PRK12936 3-ketoacyl-(acyl-carr 96.8 0.0065 1.4E-07 65.6 9.9 77 573-669 5-90 (245)
271 PRK09072 short chain dehydroge 96.7 0.0058 1.3E-07 67.2 9.6 77 573-669 4-90 (263)
272 PRK08251 short chain dehydroge 96.7 0.0056 1.2E-07 66.5 9.4 77 574-670 2-92 (248)
273 PRK08264 short chain dehydroge 96.7 0.0054 1.2E-07 66.2 9.2 75 573-669 5-83 (238)
274 COG3804 Uncharacterized conser 96.7 0.0089 1.9E-07 65.3 10.5 129 575-726 3-142 (350)
275 PRK09466 metL bifunctional asp 96.7 0.0079 1.7E-07 76.6 11.9 156 573-744 457-628 (810)
276 PRK05565 fabG 3-ketoacyl-(acyl 96.7 0.0047 1E-07 66.7 8.7 78 573-670 4-94 (247)
277 PRK06928 pyrroline-5-carboxyla 96.7 0.0062 1.3E-07 68.3 9.8 94 574-690 1-98 (277)
278 TIGR02622 CDP_4_6_dhtase CDP-g 96.7 0.0037 8.1E-08 72.0 8.3 77 573-669 3-85 (349)
279 PLN02686 cinnamoyl-CoA reducta 96.7 0.0054 1.2E-07 71.5 9.6 78 572-669 51-138 (367)
280 TIGR01915 npdG NADPH-dependent 96.7 0.0043 9.4E-08 67.0 8.1 92 575-690 1-101 (219)
281 PRK08213 gluconate 5-dehydroge 96.7 0.0051 1.1E-07 67.4 8.8 79 572-670 10-100 (259)
282 PRK07984 enoyl-(acyl carrier p 96.7 0.0061 1.3E-07 67.6 9.4 77 573-669 5-94 (262)
283 PRK06940 short chain dehydroge 96.7 0.0052 1.1E-07 68.5 8.8 75 575-670 3-87 (275)
284 TIGR01472 gmd GDP-mannose 4,6- 96.7 0.0048 1E-07 70.9 8.7 75 575-669 1-88 (343)
285 PRK07424 bifunctional sterol d 96.7 0.0082 1.8E-07 70.8 10.8 79 572-670 176-256 (406)
286 PLN02968 Probable N-acetyl-gam 96.7 0.0026 5.7E-08 74.3 6.5 97 572-690 36-134 (381)
287 PRK07066 3-hydroxybutyryl-CoA 96.7 0.0073 1.6E-07 69.1 9.9 110 574-704 7-132 (321)
288 PRK14619 NAD(P)H-dependent gly 96.7 0.004 8.6E-08 70.9 7.7 75 574-690 4-82 (308)
289 PRK11064 wecC UDP-N-acetyl-D-m 96.7 0.011 2.4E-07 70.2 11.6 108 574-706 3-136 (415)
290 PRK05650 short chain dehydroge 96.7 0.0081 1.8E-07 66.4 9.9 76 575-670 1-88 (270)
291 PRK12384 sorbitol-6-phosphate 96.7 0.006 1.3E-07 66.8 8.8 77 574-670 2-92 (259)
292 PRK06181 short chain dehydroge 96.6 0.0068 1.5E-07 66.5 9.2 76 575-670 2-89 (263)
293 TIGR01181 dTDP_gluc_dehyt dTDP 96.6 0.0098 2.1E-07 66.7 10.7 76 576-669 1-83 (317)
294 PRK06124 gluconate 5-dehydroge 96.6 0.0085 1.8E-07 65.5 9.9 78 572-669 9-98 (256)
295 COG0289 DapB Dihydrodipicolina 96.6 0.016 3.5E-07 63.5 11.7 131 574-732 2-140 (266)
296 PRK08415 enoyl-(acyl carrier p 96.6 0.0076 1.6E-07 67.3 9.6 77 573-669 4-93 (274)
297 PF03721 UDPG_MGDP_dh_N: UDP-g 96.6 0.0036 7.8E-08 66.0 6.6 125 575-732 1-138 (185)
298 PRK07856 short chain dehydroge 96.6 0.0061 1.3E-07 66.6 8.7 73 573-669 5-85 (252)
299 PRK07533 enoyl-(acyl carrier p 96.6 0.0073 1.6E-07 66.6 9.3 78 572-669 8-98 (258)
300 PRK06199 ornithine cyclodeamin 96.6 0.0052 1.1E-07 71.9 8.5 94 573-689 154-258 (379)
301 COG0702 Predicted nucleoside-d 96.6 0.011 2.4E-07 64.9 10.7 72 575-669 1-73 (275)
302 COG5310 Homospermidine synthas 96.6 0.0087 1.9E-07 66.4 9.5 195 575-791 14-259 (481)
303 COG3967 DltE Short-chain dehyd 96.6 0.0069 1.5E-07 63.8 8.3 77 574-670 5-89 (245)
304 PRK07831 short chain dehydroge 96.6 0.0062 1.3E-07 67.0 8.6 78 572-669 15-107 (262)
305 PLN02240 UDP-glucose 4-epimera 96.6 0.012 2.6E-07 67.6 11.3 77 573-669 4-91 (352)
306 PRK06935 2-deoxy-D-gluconate 3 96.6 0.0076 1.6E-07 66.1 9.3 77 572-669 13-101 (258)
307 PRK12746 short chain dehydroge 96.6 0.008 1.7E-07 65.5 9.3 76 574-669 6-100 (254)
308 PRK08507 prephenate dehydrogen 96.6 0.015 3.2E-07 65.1 11.6 94 575-695 1-96 (275)
309 PRK14874 aspartate-semialdehyd 96.6 0.0052 1.1E-07 70.8 8.1 93 574-690 1-94 (334)
310 PRK10669 putative cation:proto 96.6 0.012 2.7E-07 72.4 11.9 127 574-732 417-547 (558)
311 PRK07097 gluconate 5-dehydroge 96.6 0.008 1.7E-07 66.3 9.3 78 572-669 8-97 (265)
312 PRK09242 tropinone reductase; 96.6 0.0082 1.8E-07 65.7 9.3 77 573-669 8-98 (257)
313 cd01490 Ube1_repeat2 Ubiquitin 96.6 0.013 2.9E-07 69.2 11.5 114 576-690 1-130 (435)
314 PF02719 Polysacc_synt_2: Poly 96.6 0.013 2.9E-07 65.7 10.9 74 577-669 1-87 (293)
315 PRK05786 fabG 3-ketoacyl-(acyl 96.6 0.0073 1.6E-07 65.1 8.7 77 573-669 4-91 (238)
316 PRK08063 enoyl-(acyl carrier p 96.6 0.006 1.3E-07 66.3 8.1 76 574-669 4-92 (250)
317 PRK06129 3-hydroxyacyl-CoA deh 96.6 0.014 3.1E-07 66.3 11.5 120 575-718 3-144 (308)
318 PRK12367 short chain dehydroge 96.6 0.0096 2.1E-07 65.5 9.7 76 572-669 12-89 (245)
319 PRK06914 short chain dehydroge 96.6 0.0075 1.6E-07 66.9 9.0 75 574-669 3-91 (280)
320 TIGR01832 kduD 2-deoxy-D-gluco 96.6 0.01 2.2E-07 64.4 9.9 78 573-670 4-91 (248)
321 PRK04148 hypothetical protein; 96.6 0.019 4.1E-07 57.3 10.6 90 573-687 16-106 (134)
322 PRK14106 murD UDP-N-acetylmura 96.6 0.0085 1.8E-07 71.6 10.0 91 573-688 4-97 (450)
323 PLN02928 oxidoreductase family 96.6 0.0053 1.2E-07 71.0 7.9 100 571-690 156-262 (347)
324 PRK06113 7-alpha-hydroxysteroi 96.6 0.0068 1.5E-07 66.3 8.4 78 572-669 9-98 (255)
325 PRK08159 enoyl-(acyl carrier p 96.5 0.0095 2.1E-07 66.4 9.6 78 573-670 9-99 (272)
326 PRK07775 short chain dehydroge 96.5 0.0095 2.1E-07 66.2 9.5 77 573-669 9-97 (274)
327 PRK08628 short chain dehydroge 96.5 0.01 2.3E-07 64.9 9.7 77 572-669 5-93 (258)
328 PLN02583 cinnamoyl-CoA reducta 96.5 0.011 2.4E-07 66.6 10.1 76 573-668 5-87 (297)
329 PRK12742 oxidoreductase; Provi 96.5 0.011 2.4E-07 63.6 9.7 76 573-669 5-85 (237)
330 PRK06953 short chain dehydroge 96.5 0.011 2.3E-07 63.5 9.4 74 574-669 1-80 (222)
331 COG1179 Dinucleotide-utilizing 96.5 0.017 3.6E-07 62.5 10.6 99 572-689 28-152 (263)
332 PF01370 Epimerase: NAD depend 96.5 0.014 3.1E-07 62.4 10.5 73 577-670 1-76 (236)
333 COG0287 TyrA Prephenate dehydr 96.5 0.016 3.4E-07 65.0 11.0 93 574-693 3-101 (279)
334 KOG3007 Mu-crystallin [Amino a 96.5 0.007 1.5E-07 65.7 7.7 120 574-713 138-260 (333)
335 PRK06505 enoyl-(acyl carrier p 96.5 0.01 2.3E-07 66.0 9.5 77 573-669 6-95 (271)
336 PRK07035 short chain dehydroge 96.5 0.012 2.6E-07 64.1 9.9 78 572-669 6-95 (252)
337 PRK06079 enoyl-(acyl carrier p 96.5 0.0095 2.1E-07 65.4 9.0 77 572-669 5-93 (252)
338 PF00670 AdoHcyase_NAD: S-aden 96.5 0.0055 1.2E-07 62.9 6.4 88 206-342 24-111 (162)
339 PRK13243 glyoxylate reductase; 96.5 0.0083 1.8E-07 69.1 8.7 90 571-691 147-241 (333)
340 PRK08217 fabG 3-ketoacyl-(acyl 96.5 0.012 2.6E-07 63.8 9.5 77 573-669 4-92 (253)
341 TIGR02415 23BDH acetoin reduct 96.5 0.011 2.3E-07 64.5 9.2 75 575-669 1-87 (254)
342 PRK09987 dTDP-4-dehydrorhamnos 96.5 0.0087 1.9E-07 67.6 8.7 98 575-712 1-101 (299)
343 PLN02712 arogenate dehydrogena 96.4 0.017 3.7E-07 72.4 11.9 114 571-714 366-484 (667)
344 PRK08862 short chain dehydroge 96.4 0.012 2.7E-07 63.7 9.5 76 573-668 4-92 (227)
345 PRK07806 short chain dehydroge 96.4 0.014 3E-07 63.4 9.9 77 573-669 5-94 (248)
346 COG0476 ThiF Dinucleotide-util 96.4 0.023 5.1E-07 62.8 11.7 116 572-691 28-153 (254)
347 PRK06125 short chain dehydroge 96.4 0.011 2.4E-07 64.8 9.2 77 573-669 6-91 (259)
348 PRK03659 glutathione-regulated 96.4 0.026 5.6E-07 70.2 13.3 112 574-711 400-515 (601)
349 PRK06924 short chain dehydroge 96.4 0.01 2.2E-07 64.6 8.7 66 574-659 1-69 (251)
350 PRK09135 pteridine reductase; 96.4 0.0093 2E-07 64.5 8.4 76 574-669 6-95 (249)
351 PRK05865 hypothetical protein; 96.4 0.03 6.5E-07 71.6 14.0 92 575-691 1-103 (854)
352 PRK12823 benD 1,6-dihydroxycyc 96.4 0.015 3.2E-07 63.8 10.0 76 573-669 7-94 (260)
353 PRK06483 dihydromonapterin red 96.4 0.012 2.6E-07 63.6 9.2 75 574-669 2-84 (236)
354 PLN02653 GDP-mannose 4,6-dehyd 96.4 0.0093 2E-07 68.4 8.7 79 571-669 3-93 (340)
355 PRK08642 fabG 3-ketoacyl-(acyl 96.4 0.012 2.7E-07 63.8 9.3 77 573-669 4-91 (253)
356 PRK07370 enoyl-(acyl carrier p 96.4 0.0097 2.1E-07 65.6 8.5 77 573-669 5-97 (258)
357 PRK12480 D-lactate dehydrogena 96.4 0.0099 2.2E-07 68.4 8.8 86 572-690 144-234 (330)
358 TIGR01963 PHB_DH 3-hydroxybuty 96.4 0.013 2.8E-07 63.7 9.4 75 575-669 2-88 (255)
359 PRK05855 short chain dehydroge 96.4 0.0095 2.1E-07 72.9 9.2 78 573-670 314-403 (582)
360 PRK08293 3-hydroxybutyryl-CoA 96.4 0.014 3.1E-07 65.7 9.9 77 574-670 3-95 (287)
361 PRK06841 short chain dehydroge 96.4 0.015 3.3E-07 63.4 9.8 78 572-670 13-100 (255)
362 KOG1205 Predicted dehydrogenas 96.4 0.019 4.2E-07 64.2 10.5 80 572-671 10-103 (282)
363 PRK06114 short chain dehydroge 96.4 0.012 2.7E-07 64.3 9.1 77 573-669 7-96 (254)
364 PRK06463 fabG 3-ketoacyl-(acyl 96.4 0.017 3.7E-07 63.2 10.1 76 573-670 6-90 (255)
365 TIGR00561 pntA NAD(P) transhyd 96.4 0.022 4.9E-07 68.7 11.7 97 573-691 163-285 (511)
366 KOG1209 1-Acyl dihydroxyaceton 96.4 0.015 3.3E-07 61.5 8.9 83 572-675 5-97 (289)
367 PRK08605 D-lactate dehydrogena 96.4 0.012 2.6E-07 67.7 9.2 88 572-691 144-237 (332)
368 PRK06545 prephenate dehydrogen 96.3 0.017 3.7E-07 67.2 10.5 114 575-713 1-118 (359)
369 cd01491 Ube1_repeat1 Ubiquitin 96.3 0.022 4.7E-07 64.1 10.8 96 572-689 17-136 (286)
370 PRK06130 3-hydroxybutyryl-CoA 96.3 0.035 7.6E-07 63.1 12.7 76 574-671 4-91 (311)
371 PRK05479 ketol-acid reductoiso 96.3 0.013 2.9E-07 67.0 9.2 77 571-676 14-90 (330)
372 PRK15469 ghrA bifunctional gly 96.3 0.006 1.3E-07 69.6 6.4 88 572-690 134-226 (312)
373 KOG1200 Mitochondrial/plastidi 96.3 0.014 3E-07 61.0 8.3 78 573-670 13-101 (256)
374 PRK12481 2-deoxy-D-gluconate 3 96.3 0.015 3.3E-07 63.7 9.3 78 573-670 7-94 (251)
375 PLN00016 RNA-binding protein; 96.3 0.012 2.6E-07 68.8 8.9 96 572-690 50-164 (378)
376 PRK07819 3-hydroxybutyryl-CoA 96.3 0.025 5.3E-07 63.9 11.1 97 574-691 5-122 (286)
377 PRK08278 short chain dehydroge 96.3 0.017 3.7E-07 64.2 9.7 77 573-669 5-100 (273)
378 PRK06720 hypothetical protein; 96.3 0.022 4.8E-07 59.1 9.9 78 573-670 15-104 (169)
379 PRK08690 enoyl-(acyl carrier p 96.3 0.013 2.9E-07 64.6 8.8 78 573-670 5-95 (261)
380 PRK06398 aldose dehydrogenase; 96.3 0.01 2.3E-07 65.3 7.9 70 573-669 5-82 (258)
381 cd01488 Uba3_RUB Ubiquitin act 96.3 0.03 6.6E-07 63.1 11.5 100 576-682 1-112 (291)
382 PRK08416 7-alpha-hydroxysteroi 96.3 0.014 2.9E-07 64.3 8.6 78 572-669 6-97 (260)
383 PRK07832 short chain dehydroge 96.2 0.015 3.2E-07 64.5 8.9 76 575-670 1-89 (272)
384 PRK08594 enoyl-(acyl carrier p 96.2 0.019 4.1E-07 63.3 9.7 77 573-669 6-97 (257)
385 PF07991 IlvN: Acetohydroxy ac 96.2 0.01 2.3E-07 60.7 6.9 88 573-689 3-94 (165)
386 PRK09730 putative NAD(P)-bindi 96.2 0.015 3.3E-07 62.8 8.7 77 574-670 1-90 (247)
387 PRK08017 oxidoreductase; Provi 96.2 0.019 4.2E-07 62.5 9.5 73 575-669 3-84 (256)
388 PRK09134 short chain dehydroge 96.2 0.017 3.6E-07 63.4 9.0 77 573-669 8-97 (258)
389 TIGR01289 LPOR light-dependent 96.2 0.019 4E-07 65.5 9.7 77 574-669 3-91 (314)
390 PRK08226 short chain dehydroge 96.2 0.018 4E-07 63.1 9.4 77 573-669 5-92 (263)
391 PRK12825 fabG 3-ketoacyl-(acyl 96.2 0.017 3.7E-07 62.2 8.9 77 573-669 5-94 (249)
392 PRK06484 short chain dehydroge 96.2 0.017 3.7E-07 70.3 9.9 78 572-669 267-353 (520)
393 PRK06198 short chain dehydroge 96.2 0.014 3E-07 63.9 8.3 77 573-669 5-94 (260)
394 PRK07889 enoyl-(acyl carrier p 96.2 0.018 3.8E-07 63.5 9.1 77 573-669 6-95 (256)
395 PRK06997 enoyl-(acyl carrier p 96.2 0.017 3.8E-07 63.7 9.0 77 573-669 5-94 (260)
396 PRK06947 glucose-1-dehydrogena 96.2 0.017 3.6E-07 62.8 8.8 76 574-669 2-90 (248)
397 COG0345 ProC Pyrroline-5-carbo 96.2 0.022 4.7E-07 63.3 9.6 94 574-691 1-96 (266)
398 cd00401 AdoHcyase S-adenosyl-L 96.2 0.015 3.2E-07 68.6 8.8 69 571-669 199-267 (413)
399 PRK07574 formate dehydrogenase 96.2 0.017 3.8E-07 67.6 9.3 90 572-690 190-284 (385)
400 PRK05599 hypothetical protein; 96.2 0.017 3.6E-07 63.2 8.7 74 575-669 1-87 (246)
401 TIGR01470 cysG_Nterm siroheme 96.2 0.025 5.4E-07 60.7 9.8 89 572-686 7-97 (205)
402 TIGR00936 ahcY adenosylhomocys 96.2 0.026 5.7E-07 66.4 10.7 91 571-691 192-283 (406)
403 PRK07201 short chain dehydroge 96.2 0.018 3.8E-07 72.2 10.0 79 572-670 369-459 (657)
404 PRK03562 glutathione-regulated 96.2 0.031 6.7E-07 69.7 11.9 75 574-670 400-475 (621)
405 PRK14194 bifunctional 5,10-met 96.1 0.0098 2.1E-07 67.0 6.7 77 571-692 156-233 (301)
406 TIGR02632 RhaD_aldol-ADH rhamn 96.1 0.017 3.7E-07 72.7 9.6 79 572-670 412-504 (676)
407 cd05291 HicDH_like L-2-hydroxy 96.1 0.061 1.3E-06 61.3 13.2 73 575-669 1-78 (306)
408 PRK09436 thrA bifunctional asp 96.1 0.041 8.9E-07 70.7 13.1 154 573-744 464-634 (819)
409 PRK08324 short chain dehydroge 96.1 0.018 4E-07 72.6 9.9 78 573-670 421-509 (681)
410 COG1087 GalE UDP-glucose 4-epi 96.1 0.03 6.5E-07 62.4 10.1 74 575-669 1-77 (329)
411 PRK06484 short chain dehydroge 96.1 0.019 4.1E-07 69.8 9.7 77 573-669 4-89 (520)
412 PLN02572 UDP-sulfoquinovose sy 96.1 0.021 4.6E-07 68.3 9.8 78 571-668 44-145 (442)
413 PTZ00325 malate dehydrogenase; 96.1 0.063 1.4E-06 61.5 13.2 137 571-730 5-166 (321)
414 TIGR01179 galE UDP-glucose-4-e 96.1 0.03 6.5E-07 63.0 10.6 75 576-670 1-81 (328)
415 PRK09424 pntA NAD(P) transhydr 96.1 0.047 1E-06 66.1 12.6 98 572-691 163-286 (509)
416 PRK12937 short chain dehydroge 96.1 0.03 6.6E-07 60.5 10.2 77 573-669 4-93 (245)
417 PRK14175 bifunctional 5,10-met 96.1 0.017 3.7E-07 64.7 8.4 78 571-693 155-233 (286)
418 PRK12439 NAD(P)H-dependent gly 96.1 0.016 3.4E-07 67.0 8.3 86 572-678 5-96 (341)
419 TIGR00978 asd_EA aspartate-sem 96.1 0.018 3.8E-07 66.7 8.7 93 575-690 1-104 (341)
420 PRK08993 2-deoxy-D-gluconate 3 96.1 0.025 5.4E-07 62.0 9.5 78 572-669 8-95 (253)
421 PRK07791 short chain dehydroge 96.1 0.018 3.9E-07 64.6 8.5 77 573-669 5-102 (286)
422 PRK06603 enoyl-(acyl carrier p 96.1 0.031 6.7E-07 61.7 10.2 77 573-669 7-96 (260)
423 TIGR01214 rmlD dTDP-4-dehydror 96.1 0.024 5.1E-07 63.1 9.3 57 576-669 1-60 (287)
424 PLN03139 formate dehydrogenase 96.0 0.024 5.2E-07 66.4 9.6 91 571-690 196-291 (386)
425 PF04321 RmlD_sub_bind: RmlD s 96.0 0.013 2.8E-07 66.0 7.3 58 575-669 1-61 (286)
426 PF01262 AlaDh_PNT_C: Alanine 96.0 0.015 3.1E-07 60.4 7.0 98 571-690 17-139 (168)
427 PRK05476 S-adenosyl-L-homocyst 96.0 0.023 4.9E-07 67.3 9.4 68 572-669 210-277 (425)
428 PRK07792 fabG 3-ketoacyl-(acyl 96.0 0.022 4.7E-07 64.6 9.0 79 571-669 9-99 (306)
429 PLN02712 arogenate dehydrogena 96.0 0.036 7.8E-07 69.5 11.6 112 572-713 50-166 (667)
430 PRK12935 acetoacetyl-CoA reduc 96.0 0.021 4.6E-07 61.9 8.6 77 573-669 5-94 (247)
431 COG0451 WcaG Nucleoside-diphos 96.0 0.022 4.9E-07 63.8 9.0 73 576-671 2-76 (314)
432 PRK07069 short chain dehydroge 96.0 0.018 3.8E-07 62.6 7.9 74 576-669 1-89 (251)
433 PRK06718 precorrin-2 dehydroge 96.0 0.041 8.8E-07 58.9 10.4 86 572-684 8-95 (202)
434 PRK08936 glucose-1-dehydrogena 96.0 0.025 5.4E-07 62.1 9.1 78 572-669 5-95 (261)
435 PRK07023 short chain dehydroge 96.0 0.021 4.5E-07 62.0 8.3 74 574-669 1-87 (243)
436 PRK09287 6-phosphogluconate de 96.0 0.05 1.1E-06 65.2 12.2 114 585-721 1-120 (459)
437 PRK08220 2,3-dihydroxybenzoate 96.0 0.026 5.6E-07 61.4 9.0 72 573-669 7-86 (252)
438 TIGR01851 argC_other N-acetyl- 96.0 0.022 4.8E-07 64.5 8.5 77 575-690 2-80 (310)
439 PRK07041 short chain dehydroge 96.0 0.022 4.7E-07 61.1 8.3 72 578-669 1-79 (230)
440 TIGR00715 precor6x_red precorr 96.0 0.045 9.7E-07 60.7 10.8 92 575-689 1-98 (256)
441 PRK12938 acetyacetyl-CoA reduc 95.9 0.025 5.3E-07 61.4 8.7 77 574-670 3-92 (246)
442 TIGR01829 AcAcCoA_reduct aceto 95.9 0.025 5.4E-07 60.9 8.7 76 575-670 1-89 (242)
443 PLN02260 probable rhamnose bio 95.9 0.043 9.4E-07 69.1 12.0 79 573-669 5-90 (668)
444 PRK08703 short chain dehydroge 95.9 0.031 6.8E-07 60.4 9.5 77 573-669 5-97 (239)
445 PRK06523 short chain dehydroge 95.9 0.023 5E-07 62.2 8.4 73 572-669 7-87 (260)
446 cd05212 NAD_bind_m-THF_DH_Cycl 95.9 0.017 3.7E-07 58.2 6.7 78 571-693 25-103 (140)
447 PRK12827 short chain dehydroge 95.9 0.027 5.8E-07 60.9 8.8 77 573-669 5-97 (249)
448 PTZ00075 Adenosylhomocysteinas 95.9 0.033 7.1E-07 66.5 10.1 92 571-692 251-343 (476)
449 PRK13403 ketol-acid reductoiso 95.9 0.021 4.5E-07 64.8 8.0 71 571-671 13-83 (335)
450 PRK14188 bifunctional 5,10-met 95.9 0.015 3.2E-07 65.6 6.8 76 571-692 155-232 (296)
451 PRK11863 N-acetyl-gamma-glutam 95.9 0.023 5.1E-07 64.6 8.4 79 574-690 2-81 (313)
452 PRK05557 fabG 3-ketoacyl-(acyl 95.9 0.039 8.4E-07 59.4 9.9 77 573-669 4-93 (248)
453 PRK15182 Vi polysaccharide bio 95.9 0.046 1E-06 65.1 11.2 100 573-696 5-126 (425)
454 PLN02206 UDP-glucuronate decar 95.9 0.032 7E-07 66.8 10.0 72 572-668 117-192 (442)
455 PRK08268 3-hydroxy-acyl-CoA de 95.9 0.027 5.8E-07 68.6 9.3 96 574-695 7-128 (507)
456 PRK07530 3-hydroxybutyryl-CoA 95.9 0.036 7.7E-07 62.6 9.8 75 574-671 4-95 (292)
457 PRK08303 short chain dehydroge 95.9 0.025 5.4E-07 64.3 8.5 76 572-667 6-103 (305)
458 PRK10675 UDP-galactose-4-epime 95.9 0.026 5.6E-07 64.4 8.7 75 575-669 1-83 (338)
459 PRK12743 oxidoreductase; Provi 95.8 0.031 6.8E-07 61.2 9.0 76 574-669 2-90 (256)
460 PLN02166 dTDP-glucose 4,6-dehy 95.8 0.034 7.4E-07 66.5 9.9 73 571-668 117-193 (436)
461 PRK12824 acetoacetyl-CoA reduc 95.8 0.036 7.9E-07 59.8 9.4 76 575-670 3-91 (245)
462 PRK06701 short chain dehydroge 95.8 0.034 7.4E-07 62.6 9.4 78 572-669 44-134 (290)
463 PRK06123 short chain dehydroge 95.8 0.037 8E-07 60.0 9.3 75 575-669 3-90 (248)
464 PRK12745 3-ketoacyl-(acyl-carr 95.8 0.033 7.2E-07 60.6 9.0 75 575-669 3-90 (256)
465 PRK06171 sorbitol-6-phosphate 95.8 0.017 3.8E-07 63.5 6.9 72 573-669 8-87 (266)
466 PRK06128 oxidoreductase; Provi 95.8 0.038 8.3E-07 62.3 9.7 78 572-669 53-144 (300)
467 PLN02780 ketoreductase/ oxidor 95.8 0.033 7.1E-07 63.8 9.1 77 574-670 53-143 (320)
468 PRK00066 ldh L-lactate dehydro 95.8 0.052 1.1E-06 62.1 10.7 76 572-669 4-83 (315)
469 TIGR01296 asd_B aspartate-semi 95.8 0.019 4.2E-07 66.2 7.3 91 576-690 1-92 (339)
470 PRK06522 2-dehydropantoate 2-r 95.8 0.053 1.1E-06 61.1 10.7 79 575-674 1-81 (304)
471 COG1088 RfbB dTDP-D-glucose 4, 95.8 0.037 7.9E-07 61.6 8.8 74 575-667 1-82 (340)
472 PRK12744 short chain dehydroge 95.7 0.033 7.2E-07 61.0 8.6 77 573-669 7-99 (257)
473 PF02826 2-Hacid_dh_C: D-isome 95.7 0.015 3.3E-07 60.8 5.6 101 201-348 32-132 (178)
474 COG1023 Gnd Predicted 6-phosph 95.7 0.12 2.7E-06 55.7 12.2 119 575-721 1-125 (300)
475 TIGR03693 ocin_ThiF_like putat 95.7 0.049 1.1E-06 66.2 10.4 100 573-689 128-237 (637)
476 PRK05472 redox-sensing transcr 95.7 0.023 4.9E-07 61.3 6.9 91 573-689 83-177 (213)
477 PLN02545 3-hydroxybutyryl-CoA 95.7 0.046 1E-06 61.8 9.7 39 574-632 4-42 (295)
478 TIGR01724 hmd_rel H2-forming N 95.7 0.069 1.5E-06 60.4 10.7 84 584-696 30-122 (341)
479 PRK06035 3-hydroxyacyl-CoA deh 95.7 0.035 7.6E-07 62.6 8.7 74 575-671 4-97 (291)
480 PRK06436 glycerate dehydrogena 95.7 0.034 7.4E-07 63.2 8.6 87 571-691 119-210 (303)
481 COG0686 Ald Alanine dehydrogen 95.6 0.064 1.4E-06 59.9 10.2 97 571-690 165-268 (371)
482 PRK10217 dTDP-glucose 4,6-dehy 95.6 0.021 4.5E-07 65.8 7.0 77 574-669 1-84 (355)
483 PRK11199 tyrA bifunctional cho 95.6 0.045 9.7E-07 64.1 9.7 80 572-693 96-178 (374)
484 cd01076 NAD_bind_1_Glu_DH NAD( 95.6 0.057 1.2E-06 58.9 9.8 120 571-714 28-159 (227)
485 PLN02494 adenosylhomocysteinas 95.6 0.034 7.4E-07 66.2 8.6 91 571-691 251-342 (477)
486 TIGR03376 glycerol3P_DH glycer 95.6 0.032 7E-07 64.4 8.2 103 576-690 1-116 (342)
487 PF02737 3HCDH_N: 3-hydroxyacy 95.6 0.0097 2.1E-07 62.5 3.7 71 576-671 1-90 (180)
488 PRK05671 aspartate-semialdehyd 95.6 0.024 5.1E-07 65.4 7.0 94 573-690 3-97 (336)
489 COG1064 AdhP Zn-dependent alco 95.6 0.1 2.3E-06 59.8 12.0 96 572-691 165-260 (339)
490 COG1086 Predicted nucleoside-d 95.6 0.064 1.4E-06 64.5 10.6 79 572-669 248-335 (588)
491 PF00056 Ldh_1_N: lactate/mala 95.6 0.0059 1.3E-07 61.5 1.7 73 575-670 1-80 (141)
492 TIGR01500 sepiapter_red sepiap 95.5 0.033 7.1E-07 61.1 7.7 74 576-669 2-97 (256)
493 PRK12747 short chain dehydroge 95.5 0.055 1.2E-06 59.0 9.4 76 574-669 4-98 (252)
494 TIGR03736 PRTRC_ThiF PRTRC sys 95.5 0.057 1.2E-06 59.4 9.3 25 573-597 10-34 (244)
495 KOG2013 SMT3/SUMO-activating c 95.5 0.019 4.2E-07 66.8 5.8 99 573-690 11-135 (603)
496 PRK08945 putative oxoacyl-(acy 95.5 0.05 1.1E-06 59.2 8.9 78 572-669 10-102 (247)
497 PRK00676 hemA glutamyl-tRNA re 95.5 0.036 7.8E-07 63.6 8.0 88 571-691 171-262 (338)
498 PTZ00117 malate dehydrogenase; 95.5 0.11 2.3E-06 59.7 11.8 75 573-669 4-83 (319)
499 PRK08664 aspartate-semialdehyd 95.5 0.043 9.4E-07 63.6 8.6 94 574-690 3-107 (349)
500 PRK12921 2-dehydropantoate 2-r 95.4 0.057 1.2E-06 61.0 9.4 79 575-676 1-85 (305)
No 1
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=100.00 E-value=7.4e-196 Score=1801.20 Aligned_cols=1037 Identities=72% Similarity=1.164 Sum_probs=934.9
Q ss_pred CCCceEEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCCCCCCCChhHhhCCcEEccCCCcCCEEEeec
Q 001559 3 MLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLSECGLVLGIK 82 (1053)
Q Consensus 3 ~~~~~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a~~~f~D~~Y~~aGA~i~~~~~~adiIl~Vk 82 (1053)
+.++.+|||+||++++|||||||||++|++|++.|.+ ++.++|+||+|++|+|+|++|++|||+|++++++||||||||
T Consensus 2 ~~~~~~IgI~kE~~~~~E~RVaLtP~~v~~L~~~G~~-~~~~~V~VE~gA~a~f~D~~Y~~AGA~I~~~~~~adiIl~Vk 80 (1042)
T PLN02819 2 KLGNGVVGILAETVNKWERRAPLTPSHCARLLHSGKD-RTVSRIIVQPSSKRIHHDAQYEDVGCEISEDLSDCGLILGVK 80 (1042)
T ss_pred CcCCcEEEEEecCCCCCCCccCcCHHHHHHHHHCCCC-CCCCEEEEcCCCCCCCChHHHHHCCCEEECCCCCCCEEEEEC
Confidence 4567899999999966999999999999999999910 111299999999999999999999999999888899999999
Q ss_pred CCCccccCCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCcccchHHHHHHHHHHHHHHHHhhHhhhhc
Q 001559 83 QPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSL 162 (1053)
Q Consensus 83 ~p~~~~l~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~~l~~fg~~AG~ag~~~al~~l~~~~l~~ 162 (1053)
||+.++++++++|++|+|++|+|++|++++++|+++|+|+||||+|+|++|+||.+||+|||++|++++|+++|.++|.+
T Consensus 81 eP~~eell~~~~~i~fs~~~~aq~~n~~ll~~l~~k~it~~ayE~i~~~~G~rl~~fg~~AG~~g~~~~l~~~g~~~L~~ 160 (1042)
T PLN02819 81 QPKLEMLLPDRAYAFFSHTHKAQPENMPLLDKILEERVSLFDYELIVGDHGKRLVAFGKYAGRAGMIDFFRGLGQRLLSL 160 (1042)
T ss_pred CCCHHHhcCCCEEEEEecccccccCCHHHHHHHHHcCCeEEEEeceECCCCCEEeechHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhh
Q 001559 163 GYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFG 242 (1053)
Q Consensus 163 g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~ 242 (1053)
|++||||+++++|+|+|++++++|++++|++|+++|+|++++|.+|||+|+|+||+||+++|+.|||++|++.+|+++.+
T Consensus 161 ~~~~pf~~l~~~~~y~~~~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~ 240 (1042)
T PLN02819 161 GYSTPFLSLGSSYMYSSLAAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKG 240 (1042)
T ss_pred cCCCcccccccccccCCHHHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988843
Q ss_pred cccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccccCCCCcccCHH
Q 001559 243 KAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQ 322 (1053)
Q Consensus 243 ~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~~ 322 (1053)
.. +......+++++|||.+..+++.++++.++.|++++||+|||.|.|.|++++++++||||||+||+.++|+|||++
T Consensus 241 ~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~ 318 (1042)
T PLN02819 241 IS--QNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTK 318 (1042)
T ss_pred hh--cCCccccccceeeeeecChHHHhhccCCccccchhhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHH
Confidence 21 1112233444599999999999999986789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC-CCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHHHHHHHHH
Q 001559 323 QLQDLVRKG-CPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFG 401 (1053)
Q Consensus 323 ~v~~m~k~~-~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~~AS~~fs 401 (1053)
|+.++||+| +|++||||||||+||||||+.++|||++|+|.|||.+++.||++..+||+||||||||+++|++||++||
T Consensus 319 ~~~~~mk~G~~~l~vI~DVs~D~gG~ie~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gv~~~~VdNlP~~lPr~AS~~f~ 398 (1042)
T PLN02819 319 QLQDLTRKGGCPLVGVCDITCDIGGSIEFLNKTTSIEKPFFRYNPSNNSYHDDMDGDGILCMAVDILPTEFAKEASQHFG 398 (1042)
T ss_pred HHHHhhcCCCccceEEEEEccCCCCCeeecccCCCCcCCeEeecccccccccccCCCCeEEEEECCccccCHHHHHHHHH
Confidence 555445765 7889999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcCCHHHHhhhhhcCCeecCCCCchhHhhhcCccccccccccCCCCccccceeeeccccccccc
Q 001559 402 DILLEFIGSLSSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLVSLSGHLFDQF 481 (1053)
Q Consensus 402 ~~l~~~l~~l~~~~~~~~~~~~l~~a~i~~~G~lt~~~~yi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~gHl~d~~ 481 (1053)
+.|+||+..|++.+....+++.|++||++++|+||++|+||++||+.+.+.... +. .++.+++..++++||+||++
T Consensus 399 n~llpyv~~la~~g~~~~~~~~l~~a~~~~~G~lT~~~~yi~~~~~~~~~~~~~---~~-~~~~~~~~~v~l~ghl~d~~ 474 (1042)
T PLN02819 399 NILSPFVGSLASMKELAELPSHLRRACIAHRGSLTPLFEYIPRMRNSNAELAQD---TV-SSQSTFNILVSLSGHLFDKF 474 (1042)
T ss_pred HHHHHHHHHHHhCCchhccCHHHhcceeeeCCEecCchHHHHHHHhcccccccc---cc-cccccceEEEEeeeecccch
Confidence 999999999998765336789999999999999999999999999876554322 11 25789999999999999999
Q ss_pred chhhhhHHHHHcCCcEEEEEEEeCCCCcCccccccccCCCCcchhhhhhcccccchhccCCccccccceeecceeeeeee
Q 001559 482 LINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQISGINRISLRIGKVQ 561 (1053)
Q Consensus 482 ~~n~Aldv~~f~~g~v~lvef~V~~~s~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~~~~~~~~~~~~g~~~ 561 (1053)
++|.+||+.+.++|+|++++|+++++....|.+.+.|+.++.+.|.++||+++.+|++.++........++.....++.+
T Consensus 475 lin~~ld~i~~~gg~~~~~~~~~gqs~~~~S~~~l~v~a~d~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1042)
T PLN02819 475 LINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGADDKEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQ 554 (1042)
T ss_pred hhhhhhhhhhccCCceeeeeeccccCcccccceeeecccCcHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhccc
Confidence 99999999999999999999999988899999999999999999999999999999999987643333333333333222
Q ss_pred ccc--ccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC
Q 001559 562 ETA--TQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN 639 (1053)
Q Consensus 562 ~~~--~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~ 639 (1053)
..+ .+......++++|+|||+|++|+.++++|++.+++ .++.++.+...+..|+|+|++.++++++++.+++
T Consensus 555 ~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~------~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~ 628 (1042)
T PLN02819 555 QENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTI------SYYGDDSEEPTDVHVIVASLYLKDAKETVEGIEN 628 (1042)
T ss_pred ccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCc------cccccccccccccEEEEECCCHHHHHHHHHhcCC
Confidence 221 11222345688999999999999999999987642 1233333434456799999999999999998888
Q ss_pred ceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 640 AEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 640 ~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
++++++|++|.++|.++++++|+||+|+|+.+|..++++|+++|+||+|.+|..+++.+|+++|+++|+++++++|+|||
T Consensus 629 ~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPG 708 (1042)
T PLN02819 629 AEAVQLDVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPG 708 (1042)
T ss_pred CceEEeecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCceEEEEeeccCCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecCCCccccce
Q 001559 720 IDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAE 799 (1053)
Q Consensus 720 i~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~~~~~~~~~ 799 (1053)
++||++++++++.+.++|++.+|.+||||+|+|++++|||+|||||||+++|++|+||+++++||++++|++.++++..+
T Consensus 709 id~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~~npa~~i~~G~~~~V~~~~l~~~~~ 788 (1042)
T PLN02819 709 IDHMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAGQNPAVYKSNGQIIHVDGENLFASAV 788 (1042)
T ss_pred HHHHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHhcCcceeeECCEEEEecchhhhhhcc
Confidence 99999999999988788999999999999999999999999999999999999999999999999999999989999889
Q ss_pred EEEecCCCcceeecccCCCccccccccCcCcCccccceeeeecccHHHHHHHHHHcCCCCCCCcccccCCCCCCHHHHHH
Q 001559 800 KFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLC 879 (1053)
Q Consensus 800 ~~~~p~~~~~~le~~~n~dsl~~~~~ygi~~~~~~l~r~TlRy~G~~~~~~~l~~lGLl~~~~~~~~~~g~~~s~~~~~~ 879 (1053)
+++|+.+++|.||+||||||++|.+.|||+.+++||+||||||+||+++|++|++||||++++.+.+..+..+||+++++
T Consensus 789 ~~~~~~~p~~~lE~~pNRdSl~y~~~Ygi~~~a~tl~RgTLRy~Gf~~~~~~l~~LGl~~~~~~~~~~~~~~~tw~~~~~ 868 (1042)
T PLN02819 789 RFRLPNLPAFALECLPNRDSLVYGELYGIEKEAATIFRGTLRYEGFSMIMATLSKLGLFDSENHPLLSTGKRTTYGALLD 868 (1042)
T ss_pred ccccccCCCcceEEccCCCcchhHHHhCCCcccceeeEEEEecCCHHHHHHHHHHcCCCCCCccccccCCCCCCHHHHHH
Confidence 99999899999999999999999999999439999999999999999999999999999999988776677899999999
Q ss_pred HHhhcccccCCCCCCChHHHHHHHHhcCccchhhhHHHHHHHHHhhccccCcccCCCCCChhHHhHHHHHHhhcCCCCCC
Q 001559 880 EILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEE 959 (1053)
Q Consensus 880 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~~~~~~~L~~kl~~~p~e~ 959 (1053)
.+++.++++..+...+++++..++.....+...+++..+++.++|||||++++++..++||+|+||++|++||+|.|+|+
T Consensus 869 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~v~~~~~tp~d~l~~~Le~kl~y~~~e~ 948 (1042)
T PLN02819 869 ALLLQDGHNENGPLAGEEEISKRLAKLGHSKNRETAAKAAKTIVFLGLDEETEVPKSCKSIFDVTCYRMEEKLAYSGNEQ 948 (1042)
T ss_pred HHhCCCCcccccccccchhHHHHHHhhhcccchhhHHHHHHHhhhhcccccccccCCCCCHHHHHHHHHHHHhCCCCCCC
Confidence 99997443222333457777777777655665666788999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEEcCCCeeeeeEEEEEEEeccccCCCcccchhhhhhHHHHHHHHHHHcCccCCCceecccCCCccHHHHH
Q 001559 960 DMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALD 1039 (1053)
Q Consensus 960 D~v~m~~~v~~~~~~g~~~~~~~~tl~~~g~~~~~~~~tAMa~ttG~p~aiaA~lil~g~i~~~GV~~P~~~~~y~p~L~ 1039 (1053)
|||+|+|+|++++++|++.++++++|++||++..++++||||||||+|+||||++||+|+|+.+||+.|.++++|.|+|+
T Consensus 949 DmVvl~h~~~~e~~~g~~~~~~t~tlv~~Gd~~~g~~~SAMAktVG~P~aiaa~lil~g~I~~~Gv~~P~~~eiy~p~l~ 1028 (1042)
T PLN02819 949 DMVLLHHEVEVEFPDSKRIEKHSATLLEFGEIKNGRTTTAMAKTVGIPAAIGALLLLEGKIKTRGVLRPLEPEVYVPALE 1028 (1042)
T ss_pred eEEEEEEEEEEEECCCCceEEEEEEEEEecCcCCCCcccHHHHhhcchHHHHHHHHhCCCcCCCeeeCCCCHHHhHHHHH
Confidence 99999999999998887658999999999997445568999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEc
Q 001559 1040 MLQAYGIKLVEKS 1052 (1053)
Q Consensus 1040 ~L~~~GI~~~e~~ 1052 (1053)
+|+++||.++|++
T Consensus 1029 ~L~~~GI~~~e~~ 1041 (1042)
T PLN02819 1029 ILQAYGIKLMEKV 1041 (1042)
T ss_pred HHHHcCCceEEEe
Confidence 9999999999986
No 2
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-73 Score=623.49 Aligned_cols=441 Identities=45% Similarity=0.711 Sum_probs=406.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH-H
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK-S 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~-~ 652 (1053)
+++||++|+|+++++++++|+++. ++.|+|++|+..++++++...+ ++++.+|+.+.+ .
T Consensus 2 ~~~vlllgsg~v~~p~~d~ls~~~-------------------dv~vtva~~~~~~~~~~~~~~~-~~av~ldv~~~~~~ 61 (445)
T KOG0172|consen 2 KKGVLLLGSGFVSRPVADFLSRKK-------------------DVNVTVASRTLKDAEALVKGIN-IKAVSLDVADEELA 61 (445)
T ss_pred CcceEEecCccccchHHHHHhhcC-------------------CceEEEehhhHHHHHHHhcCCC-ccceEEEccchHHH
Confidence 578999999999999999999987 3699999999999999999876 899999999887 8
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHh
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHA 732 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~ 732 (1053)
|+..+++.|+||+++|+.+|+.+++.|+..+.|+++.||+.+++++|++.|+.+|+++++++|+|||||||+|+..++.+
T Consensus 62 L~~~v~~~D~viSLlP~t~h~lVaK~~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~a~~ti~~v 141 (445)
T KOG0172|consen 62 LRKEVKPLDLVISLLPYTFHPLVAKGCIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMPAMKTIDLV 141 (445)
T ss_pred HHhhhcccceeeeeccchhhHHHHHHHHHhhcccccccccCHHHHhhhhhccCCCceEecccccCcchhhhhhhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCceEEEEeeccCCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecCCCccccceEEEecCCCcceee
Q 001559 733 HVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALE 812 (1053)
Q Consensus 733 ~~~~~~v~sf~~~~Gg~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~~~~~~~~~~~~~p~~~~~~le 812 (1053)
+..+++++||.+||||+|+|+.++||+||||||||.+++.+.+++|.|+.||+.+.|++.++++..-+++| +++++++
T Consensus 142 h~hgg~i~sf~sycGglpape~s~nplgykfsws~~gvl~a~rnsAky~~~Gkiv~v~g~~~~~~~~~~~~--~pg~al~ 219 (445)
T KOG0172|consen 142 HEHGGKIKSFKSYCGGLPAPERSNNPLGYKFSWSPLGVLLALRNSAKYYKNGKIVEVDGGDLADTATHYDF--YPGPALE 219 (445)
T ss_pred HhhcceeeehhhhcCCccChhhCCCCcceeeccchhhhhhhccccchhccCCeEEEeccccHHhhccCccc--Ccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999888777667777 7788999
Q ss_pred cccCCCccccccccCcCcCccccceeeeecccHHHHHHHHHHcCCCCCCCcccccC-CCCCCHHHHHHHHhhcccccCCC
Q 001559 813 CLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQ-GSGPTFRMFLCEILKMDSQKMGE 891 (1053)
Q Consensus 813 ~~~n~dsl~~~~~ygi~~~~~~l~r~TlRy~G~~~~~~~l~~lGLl~~~~~~~~~~-g~~~s~~~~~~~~l~~~~~~~~~ 891 (1053)
|||||||+.|.+.|+|+.++++++|||+||.||..++.+|.++|+++.+-.+.... +..++|.++++.+.+..
T Consensus 220 ~yPNrdst~y~evy~I~~ea~tilrgtlryqgf~~~i~aL~~~G~~~~da~~~~~~~an~L~W~~~~~~~~g~~------ 293 (445)
T KOG0172|consen 220 CYPNRDSTEYSEVYGIPREAKTILRGTLRYQGFVLIIGALVRCGLLACDALEKFSIPANILTWKELLTSLGGPF------ 293 (445)
T ss_pred ccCCcchhhHHHHhcchHHHHHHHhcccccccHHHHHHHHHHcCccchhhHhhcCCCCCcccHHHHHHhhcCCC------
Confidence 99999999999999994499999999999999999999999999999887554433 57899999999998852
Q ss_pred CCCChHHHHHHHHhcCccchhhhHHHHHHHHHhhccccCcccCCCCCChhHHhHHHHHHhhcCCCCCCceEEEEEEEEEE
Q 001559 892 APLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVE 971 (1053)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~~~~~~~L~~kl~~~p~e~D~v~m~~~v~~~ 971 (1053)
..+.+++|...+..+-..+ .+++.++.|||++++..++. +++++|++|.+|+.+++|.++|+||++|+|.++++
T Consensus 294 ~~i~ed~i~~i~~~~~~~~-----~~~l~~~e~Lg~~~~k~v~~-~~~~~DTl~~~l~~~l~y~~~e~Dmvvl~h~~~~~ 367 (445)
T KOG0172|consen 294 SEIEEDDIKVICIYLSGKD-----PRILSTLEWLGLFSDKLVTV-RGVSLDTLCPHLEEPLYYVDTEFDMVVLQHKFGTE 367 (445)
T ss_pred cCccHHHHHHHHHHhhcCc-----cchhhhhHhcCCCccccccc-cCCchhccccccccceeccCCccceeEEEecceee
Confidence 2345666666665532111 15788999999999877654 59999999999999999999999999999999999
Q ss_pred cCCCeeeeeEEEEEEEeccccCCCcccchhhhhhHHHHHHHHHHHcCccCCCceecccCCCccHHHHHHHHhCCCEEEEE
Q 001559 972 FPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEK 1051 (1053)
Q Consensus 972 ~~~g~~~~~~~~tl~~~g~~~~~~~~tAMa~ttG~p~aiaA~lil~g~i~~~GV~~P~~~~~y~p~L~~L~~~GI~~~e~ 1051 (1053)
++.|+. ++++.+++.||+. .|+++||+|||+|+|++++++++|.|..+|++.|.+.++|.|.+++|+++||..+|+
T Consensus 368 ~p~g~~-e~~t~~l~~yg~~---ng~samaktVg~p~ai~~~~~l~~~I~akgl~~p~~~ev~~p~l~~l~~~gi~~~~~ 443 (445)
T KOG0172|consen 368 PPEGKV-ESITHTLVLYGRE---NGESAMAKTVGSPTAIAAKMLLDGWIRAKGLLRPMSAEVYRPALDRLKAYGIKLTEK 443 (445)
T ss_pred CCCCce-EEeeecHhhcCCc---cchhHHHHhcCchHhhhhhhcccceeecccccchhhHHhhhHHHHHHHHhCceeeee
Confidence 999999 9999999999987 789999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 001559 1052 S 1052 (1053)
Q Consensus 1052 ~ 1052 (1053)
.
T Consensus 444 ~ 444 (445)
T KOG0172|consen 444 I 444 (445)
T ss_pred c
Confidence 4
No 3
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=100.00 E-value=6.1e-64 Score=586.02 Aligned_cols=354 Identities=19% Similarity=0.282 Sum_probs=292.1
Q ss_pred EEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccCC--CcCCEEEeecC
Q 001559 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDL--SECGLVLGIKQ 83 (1053)
Q Consensus 8 ~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~~--~~adiIl~Vk~ 83 (1053)
+|||+||++ +|||||||||++|++|+++| |+|+||+|+ .++|+|++|++|||+|+++. .+||||+|||+
T Consensus 1 ~IGvpkE~~-~~E~RVAltP~~v~~L~k~G------~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV~~ 73 (511)
T TIGR00561 1 KIGVPRESL-DNECRVAATPKTVQQLLKLG------FDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKVNA 73 (511)
T ss_pred CEEEecCCC-CCCeeeccCHHHHHHHHhCC------CEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEeCC
Confidence 489999999 89999999999999999999 999999998 69999999999999998763 35999999999
Q ss_pred CCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCC---CCcc-cchHHHHHHHHHHHHHHHHhh
Q 001559 84 PKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD---NGRR-LLAFGKFAGRAGMIDFLHGLG 156 (1053)
Q Consensus 84 p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~---~~~~-l~~fg~~AG~ag~~~al~~l~ 156 (1053)
|+++|+ ++|+++++|+|+. .|++++++|+++|+|+|+||.|||. |.++ +++|+++|||++++++++.|+
T Consensus 74 P~~~e~~~l~~g~tli~~l~p~----~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~Aa~~lg 149 (511)
T TIGR00561 74 PSDAEIAELPAGKALVSFIWPA----QNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIEAAHEFG 149 (511)
T ss_pred CCHHHHHhcCCCCEEEEEcCcc----CCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHHHHHHhh
Confidence 998654 7999999999964 4899999999999999999999874 4454 688999999999999999999
Q ss_pred HhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCC
Q 001559 157 QRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 157 ~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~d 236 (1053)
+++. |..|++ + .++|.+++|+|+|++|+.|+.+++++|+. |.+.|
T Consensus 150 r~~~--g~~taa----------------------------g----~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d 194 (511)
T TIGR00561 150 RFFT--GQITAA----------------------------G----KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFD 194 (511)
T ss_pred hhcC--CceecC----------------------------C----CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 9753 333322 2 45689999999999999999999999997 77777
Q ss_pred chhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-cCCC
Q 001559 237 LPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-EQRF 315 (1053)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g~~~ 315 (1053)
.+....+. .+.+|+++...+..+..++.++|+++...++.+..+..+ .+.++.+||+|||++| |+++
T Consensus 195 ~~~~rle~-----------a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~-~e~~~~~DIVI~TalipG~~a 262 (511)
T TIGR00561 195 TRPEVKEQ-----------VQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF-AAQAKEVDIIITTALIPGKPA 262 (511)
T ss_pred CCHHHHHH-----------HHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH-HHHhCCCCEEEECcccCCCCC
Confidence 54322210 012455543444334445568999886555554445556 5566789999999999 9999
Q ss_pred CcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHHH
Q 001559 316 PRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKE 395 (1053)
Q Consensus 316 P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~~ 395 (1053)
|+|||++|++.| | |||+|||||||+|||||++.+. |+|+. ++||+|||++|||+++|++
T Consensus 263 P~Lit~emv~~M-K---pGsvIVDlA~d~GGn~E~t~p~-----~~~~~------------~~GV~~~gv~nlPs~~p~~ 321 (511)
T TIGR00561 263 PKLITEEMVDSM-K---AGSVIVDLAAEQGGNCEYTKPG-----EVYTT------------ENQVKVIGYTDLPSRLPTQ 321 (511)
T ss_pred CeeehHHHHhhC-C---CCCEEEEeeeCCCCCEEEecCc-----eEEEe------------cCCEEEEeeCCccccCHHH
Confidence 999999999996 6 7899999999999999997543 34543 3689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC--CCC-cC-CHHHHhhhhhcCCeecCCCC
Q 001559 396 ASQHFGDILLEFIGSLSSTV--DFT-EL-PSHLRRACIAHGGALTTLYE 440 (1053)
Q Consensus 396 AS~~fs~~l~~~l~~l~~~~--~~~-~~-~~~l~~a~i~~~G~lt~~~~ 440 (1053)
||++||+|++|||..|++++ .+. |+ |++++++|++++|++|++..
T Consensus 322 AS~l~s~nl~~~l~~l~~~~~~~~~~d~~d~vlr~~~v~~~G~it~~~p 370 (511)
T TIGR00561 322 SSQLYGTNLVNLLKLLCKEKDGNIKVDFEDVVIRGVTVSREGEITWPPP 370 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccccCcCChHHhcCeEEECCEEeCCCC
Confidence 99999999999999998542 222 55 89999999999999999764
No 4
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-61 Score=514.33 Aligned_cols=337 Identities=21% Similarity=0.312 Sum_probs=292.2
Q ss_pred eEEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccCCC----cCCEEEe
Q 001559 7 GVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDLS----ECGLVLG 80 (1053)
Q Consensus 7 ~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~~~----~adiIl~ 80 (1053)
|+||+|||+| ++|+||+|||..|+.|+++| |+|+||.|+ +++|+|++|+++||+|+++.. ++|+|+|
T Consensus 1 M~IGvpkEik-~~E~RValtP~~V~~l~~~G------heVlVe~gAG~gsg~~D~~Y~~aGA~Iv~ta~~vw~~~dmvvK 73 (371)
T COG0686 1 MRIGVPKEIK-NNENRVALTPASVRELVNHG------HEVLVETGAGAGSGFDDDDYEAAGAKIVATAAEVWAEADMVVK 73 (371)
T ss_pred Cccccccccc-CCcceeccChHhHHHHHhCC------cEEEEecCCcCCCCCChHHHHHcCCEEecCHHHhhcccceEEE
Confidence 6899999999 89999999999999999999 999999999 799999999999999996542 4899999
Q ss_pred ecCCCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCcc--cchHHHHHHHHHHHHHHHHh
Q 001559 81 IKQPKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGRR--LLAFGKFAGRAGMIDFLHGL 155 (1053)
Q Consensus 81 Vk~p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~~--l~~fg~~AG~ag~~~al~~l 155 (1053)
||||.+.|+ ++++++|.|.|. +..+++.+.|+++|+|.|+||.+...+|.. |..|+.+||..++..+++.|
T Consensus 74 vKEP~~~EY~ylregqiLftyLHL----A~~~~lt~~l~~~gvtaIayETV~~~~g~lPlLaPMSeVAGrla~q~Ga~~l 149 (371)
T COG0686 74 VKEPLPSEYPYLREGQILFTYLHL----AASPELTEALLKSGVTAIAYETVQLPDGNLPLLAPMSEVAGRLAAQAGAYYL 149 (371)
T ss_pred ecCCChhhhhhhcCCcEEEEEeee----cCChHHHHHHHHcCcceEEEEEEEcCCCCCcccchHHHHhhhHHHHHHHHHH
Confidence 999998875 689999999886 468999999999999999999999887653 68999999999999988887
Q ss_pred hHhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCC
Q 001559 156 GQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPS 235 (1053)
Q Consensus 156 ~~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~ 235 (1053)
.+. ..|+++.++|+| ++.|.+|+|+|.|+||..|..+|-.|||+ |+..
T Consensus 150 ek~------------------------------~GG~GvllgGvp-GV~~~kv~iiGGGvvgtnaAkiA~glgA~-Vtil 197 (371)
T COG0686 150 EKT------------------------------NGGKGVLLGGVP-GVLPAKVVVLGGGVVGTNAAKIAIGLGAD-VTIL 197 (371)
T ss_pred Hhc------------------------------cCCceeEecCCC-CCCCccEEEECCccccchHHHHHhccCCe-eEEE
Confidence 654 138899999999 89999999999999999999999999997 7776
Q ss_pred Cch--hhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-c
Q 001559 236 RLP--ELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-E 312 (1053)
Q Consensus 236 dl~--~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g 312 (1053)
|+. .+.+- + ..|+ ..-..++.++.+. ++.++.+|+||+++++ |
T Consensus 198 d~n~~rl~~l-------d-----d~f~-----------------~rv~~~~st~~~i-----ee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 198 DLNIDRLRQL-------D-----DLFG-----------------GRVHTLYSTPSNI-----EEAVKKADLVIGAVLIPG 243 (371)
T ss_pred ecCHHHHhhh-------h-----HhhC-----------------ceeEEEEcCHHHH-----HHHhhhccEEEEEEEecC
Confidence 642 22210 0 0111 1112444555433 5667789999999999 9
Q ss_pred CCCCcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHH
Q 001559 313 QRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF 392 (1053)
Q Consensus 313 ~~~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l 392 (1053)
.++|+|+|++|+++| | |||||+|||||+||+||+ +++||+++|+|..+ ||.||||.|+|+.+
T Consensus 244 akaPkLvt~e~vk~M-k---pGsVivDVAiDqGGc~Et-~~~TTh~~PtY~~~-------------gvvhY~VaNmPgaV 305 (371)
T COG0686 244 AKAPKLVTREMVKQM-K---PGSVIVDVAIDQGGCFET-SHPTTHDDPTYEVD-------------GVVHYGVANMPGAV 305 (371)
T ss_pred CCCceehhHHHHHhc-C---CCcEEEEEEEcCCCceec-cccccCCCCceeec-------------CEEEEecCCCCccc
Confidence 999999999999996 6 899999999999999997 59999999999976 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC--cCCHHHHhhhhhcCCeecCC
Q 001559 393 AKEASQHFGDILLEFIGSLSSTVDFT--ELPSHLRRACIAHGGALTTL 438 (1053)
Q Consensus 393 p~~AS~~fs~~l~~~l~~l~~~~~~~--~~~~~l~~a~i~~~G~lt~~ 438 (1053)
||+||+.++|..+||+..+++.+..+ .-|+.|++++.+++|++|++
T Consensus 306 prTst~AL~nat~py~l~la~~G~~~a~~~n~~l~~Gln~~~G~vt~~ 353 (371)
T COG0686 306 PRTSTQALTNATLPYILQLADKGLLKALKDNPALAKGLNTYNGKVTNE 353 (371)
T ss_pred cchhHHHhhhcchHHHHHHhcchHHHHhhcCHHHhccchhhcceeccH
Confidence 99999999999999999999886433 44889999999999999975
No 5
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=100.00 E-value=4.9e-58 Score=526.67 Aligned_cols=339 Identities=21% Similarity=0.269 Sum_probs=283.3
Q ss_pred eEEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccCCC---cCCEEEee
Q 001559 7 GVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDLS---ECGLVLGI 81 (1053)
Q Consensus 7 ~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~~~---~adiIl~V 81 (1053)
|+|||+||++ ++||||||||++|++|++.| |+|+||+|+ .++|+|++|++|||+|+++.+ +||||++|
T Consensus 1 m~igi~~E~~-~~E~Rval~P~~v~~l~~~g------~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~~dii~~V 73 (370)
T TIGR00518 1 MRIGVPKEIK-NNEFRVALTPAGVAELTSRG------HEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWDAELVLKV 73 (370)
T ss_pred CEEEEEccCC-CCCceecCCHHHHHHHHhCC------CEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhcCCEEEEe
Confidence 5899999999 79999999999999999999 999999998 899999999999999987643 59999999
Q ss_pred cCCCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCc-c-cchHHHHHHHHHHHHHHHHhh
Q 001559 82 KQPKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGR-R-LLAFGKFAGRAGMIDFLHGLG 156 (1053)
Q Consensus 82 k~p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~-~-l~~fg~~AG~ag~~~al~~l~ 156 (1053)
|+|..+++ .+++++++|.|+. .|++++++++++++|+|+||.|++.++. + +++|+++|||.+++.+.+.|.
T Consensus 74 k~p~~~~~~~~~~g~~l~~~~~~a----~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~aa~~~~ 149 (370)
T TIGR00518 74 KEPLPEEYGYLRHGQILFTYLHLA----AERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLE 149 (370)
T ss_pred CCCCHHHHhhcCCCcEEEEEeccC----CCHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHHHHHhH
Confidence 99987754 6889998888864 5899999999999999999999988754 3 689999999999999999998
Q ss_pred HhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCC
Q 001559 157 QRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 157 ~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~d 236 (1053)
+.+. |+++...|++ +++|.+++|+|+|++|++|+++++++|++ |.+.|
T Consensus 150 ~~~~------------------------------g~~~~~~~~~-~l~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d 197 (370)
T TIGR00518 150 KTQG------------------------------GRGVLLGGVP-GVEPGDVTIIGGGVVGTNAAKMANGLGAT-VTILD 197 (370)
T ss_pred hhcC------------------------------CcceeecCCC-CCCCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEE
Confidence 7543 4445555665 77899999999999999999999999996 77766
Q ss_pred chhhh-hcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-cCC
Q 001559 237 LPELF-GKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-EQR 314 (1053)
Q Consensus 237 l~~~~-~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g~~ 314 (1053)
.+... +++. ..++..+. ..+.+++ .+ .+.++.+||||||+.| +.+
T Consensus 198 ~~~~~~~~l~-----------~~~g~~v~-----------------~~~~~~~----~l-~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 198 INIDRLRQLD-----------AEFGGRIH-----------------TRYSNAY----EI-EDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCHHHHHHHH-----------HhcCceeE-----------------eccCCHH----HH-HHHHccCCEEEEccccCCCC
Confidence 43211 1000 01111100 0011111 12 4556789999999999 899
Q ss_pred CCcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHH
Q 001559 315 FPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAK 394 (1053)
Q Consensus 315 ~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~ 394 (1053)
.|.||++++++.| + |+++|+||+||+|||||+ .++||+++|+|.++ ||+|||+||||+.||+
T Consensus 245 ~p~lit~~~l~~m-k---~g~vIvDva~d~GG~~e~-~~~t~~d~p~~~~~-------------Gv~~~~v~nlP~~~p~ 306 (370)
T TIGR00518 245 APKLVSNSLVAQM-K---PGAVIVDVAIDQGGCVET-SRPTTHDQPTYAVH-------------DVVHYCVANMPGAVPK 306 (370)
T ss_pred CCcCcCHHHHhcC-C---CCCEEEEEecCCCCCccC-CcCCCCCCCEEEEC-------------CeEEEEeCCcccccHH
Confidence 9999999999996 5 789999999999999996 67999999999864 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC-cC-CHHHHhhhhhcCCeecCCC
Q 001559 395 EASQHFGDILLEFIGSLSSTVDFT-EL-PSHLRRACIAHGGALTTLY 439 (1053)
Q Consensus 395 ~AS~~fs~~l~~~l~~l~~~~~~~-~~-~~~l~~a~i~~~G~lt~~~ 439 (1053)
+||++||++|+|||..|++++... ++ |++|+++|++++|++|++.
T Consensus 307 ~aS~~~~~~l~~~l~~~~~~g~~~~~~~d~~~~~~~~~~~G~~~~~~ 353 (370)
T TIGR00518 307 TSTYALTNATMPYVLELANHGWRAACRSNPALAKGLNTHEGALLSEA 353 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccChHHhcCeEEeCCEEcCHH
Confidence 999999999999999999766444 44 8999999999999999874
No 6
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-58 Score=492.59 Aligned_cols=343 Identities=18% Similarity=0.264 Sum_probs=295.6
Q ss_pred EEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccC--CCcCCEEEeecC
Q 001559 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISED--LSECGLVLGIKQ 83 (1053)
Q Consensus 8 ~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~--~~~adiIl~Vk~ 83 (1053)
+|||+||+. .+|+||++||+.|++|+++| |.|.||+|+ .+.|+|++|+++||+|.+. ..++|+|+||.+
T Consensus 1 ~igvp~E~~-~~E~Rva~tP~tv~~l~~~G------~~v~ve~gaG~~a~~~D~~y~aaGa~i~~~~~~~~adiilKv~~ 73 (356)
T COG3288 1 RIGVPKESL-ANETRVAATPETVKKLVKLG------FDVVVESGAGLRASFPDAAYVAAGATIGAADAVWQADIILKVRA 73 (356)
T ss_pred Ccccccccc-CCCceeecCHHHHHHHHhCC------cEEEEecCCccccCCChHHHHHhccEeehhhhhccCCeeeeecC
Confidence 489999999 99999999999999999999 999999999 7999999999999999842 246999999999
Q ss_pred CCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCC---CCcc-cchHHHHHHHHHHHHHHHHhh
Q 001559 84 PKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD---NGRR-LLAFGKFAGRAGMIDFLHGLG 156 (1053)
Q Consensus 84 p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~---~~~~-l~~fg~~AG~ag~~~al~~l~ 156 (1053)
|...|+ .++.+.+.|.+++ .|.+++.+|..++++.|.+|.+|+. |.++ |+|+.+.+||..++.++++|+
T Consensus 74 p~a~e~~~~~~ga~lv~~l~p~----~~~~~v~~La~~~La~fag~~Vpr~vraqlhdpLsS~aNaigy~aVi~Aa~a~~ 149 (356)
T COG3288 74 PSAAEIALLKEGATLVSFLNPY----QNDELVFALAIFVLAAFAGEAVPRIVRAQLHDPLSSQANAIGYIAVIGAALAYG 149 (356)
T ss_pred CchhhhhhcccchhhhhhcCcc----cChHHHHHHHHHHHHHHHHhhhccccchhhccHHHhhhhhhhHHHHHHHHHHhh
Confidence 987765 5788888887764 6899999999999999999999986 5665 899999999999999999999
Q ss_pred HhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCC
Q 001559 157 QRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 157 ~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~d 236 (1053)
++|.+ ++|| +| +++|.+++++|.|++|++|+.+++++|+. |+..|
T Consensus 150 rffpm---------------------~~TA----------ag---tv~pA~vlv~G~Gvagl~aiata~~lG~i-Vt~rd 194 (356)
T COG3288 150 RFFPM---------------------QITA----------AG---TVSPAKVLVIGAGVAGLAAIATAVRLGAI-VTARD 194 (356)
T ss_pred hcccc---------------------hhhh----------cc---cccchhhhhhhHHHHHHHHHHHHhhcceE-Eehhh
Confidence 87543 4444 34 77899999999999999999999999995 99999
Q ss_pred chhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-cCCC
Q 001559 237 LPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-EQRF 315 (1053)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g~~~ 315 (1053)
+|-..++ | .++.|.++...+ .+ ++.++|+|+++.++.+.++..| .++++..||||+||++ |+++
T Consensus 195 lrm~~Ke---q--------v~s~Ga~f~~~~-~e--e~~gGYAk~ms~~~~~~q~~~~-a~~~~~~DivITTAlIPGrpA 259 (356)
T COG3288 195 LRMFKKE---Q--------VESLGAKFLAVE-DE--ESAGGYAKEMSEEFIAKQAELV-AEQAKEVDIVITTALIPGRPA 259 (356)
T ss_pred hhhHHhh---h--------hhhccccccccc-cc--ccCCCccccCCHHHHHHHHHHH-HHHhcCCCEEEEecccCCCCC
Confidence 9855532 1 245677776665 22 2468999987777766667778 5667788999999999 9999
Q ss_pred CcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHHH
Q 001559 316 PRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKE 395 (1053)
Q Consensus 316 P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~~ 395 (1053)
|+|||++||++| | |||||||+++.+|||||+|.++.++ ..|||+|+|..|||+.||.+
T Consensus 260 P~Lvt~~mv~sM-k---pGSViVDlAa~~GGNce~t~pg~~v------------------~~~gV~iig~~nlp~r~a~~ 317 (356)
T COG3288 260 PKLVTAEMVASM-K---PGSVIVDLAAETGGNCELTEPGKVV------------------TKNGVKIIGYTNLPGRLAAQ 317 (356)
T ss_pred chhhHHHHHHhc-C---CCcEEEEehhhcCCCcccccCCeEE------------------EeCCeEEEeecCcchhhhhh
Confidence 999999999996 6 8999999999999999998766443 24799999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcC-CHHHHhhhhhcCCe
Q 001559 396 ASQHFGDILLEFIGSLSSTVDFTEL-PSHLRRACIAHGGA 434 (1053)
Q Consensus 396 AS~~fs~~l~~~l~~l~~~~~~~~~-~~~l~~a~i~~~G~ 434 (1053)
||++|++||++||+.|++++... + |++++.+|+|++|+
T Consensus 318 aS~LYa~Nl~~~l~ll~~~~~~~-~~D~vv~~~~vt~~g~ 356 (356)
T COG3288 318 ASQLYATNLVNLLKLLCKKKDAI-FDDEVVRAVTVTRDGE 356 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCCCc-chHHHHhhheeecCCC
Confidence 99999999999999998876533 5 78899999999995
No 7
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=100.00 E-value=9.9e-57 Score=527.62 Aligned_cols=355 Identities=19% Similarity=0.282 Sum_probs=286.3
Q ss_pred eEEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccC--CCcCCEEEeec
Q 001559 7 GVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISED--LSECGLVLGIK 82 (1053)
Q Consensus 7 ~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~--~~~adiIl~Vk 82 (1053)
|+|||+||++ +|||||||||++|++|+++| |+|+||+|+ .++|+|++|++|||+|+++ +.+||||+|||
T Consensus 1 m~IGipkE~~-~~E~RValtP~~v~~L~~~G------~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV~ 73 (509)
T PRK09424 1 MRIGIPRERL-PGETRVAATPKTVEQLLKLG------FEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKVN 73 (509)
T ss_pred CeEEEecCCC-CCCeEeccCHHHHHHHHHCC------CEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEeC
Confidence 6899999999 99999999999999999999 999999998 7999999999999999875 33699999999
Q ss_pred CCCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCC---CCcc-cchHHHHHHHHHHHHHHHHh
Q 001559 83 QPKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD---NGRR-LLAFGKFAGRAGMIDFLHGL 155 (1053)
Q Consensus 83 ~p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~---~~~~-l~~fg~~AG~ag~~~al~~l 155 (1053)
+|+++|+ ++|+++++|.|+. +|++++++|+++|+|+|+||+|||. |.++ +++|+++|||.+++++.+.+
T Consensus 74 ~P~~~e~~~l~~g~~li~~l~p~----~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av~~aa~~~ 149 (509)
T PRK09424 74 APSDDEIALLREGATLVSFIWPA----QNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAVIEAAHEF 149 (509)
T ss_pred CCCHHHHHhcCCCCEEEEEeCcc----cCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHHHHHHHHh
Confidence 9998654 7999999999974 6899999999999999999999973 5555 68999999999999999999
Q ss_pred hHhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCC
Q 001559 156 GQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPS 235 (1053)
Q Consensus 156 ~~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~ 235 (1053)
++.+.+ ..++++ .++|.+|+|+|+|++|++|+.+|+++||+ |.+.
T Consensus 150 ~~~~~g------------------------------~~taaG----~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~ 194 (509)
T PRK09424 150 GRFFTG------------------------------QITAAG----KVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAF 194 (509)
T ss_pred cccCCC------------------------------ceeccC----CcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEE
Confidence 986432 122222 45689999999999999999999999996 8888
Q ss_pred CchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-cCC
Q 001559 236 RLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-EQR 314 (1053)
Q Consensus 236 dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g~~ 314 (1053)
|++....+. -+.+|+.+...+..+.....++|.++......+..+..| .+.++.+||+|+|+.| +++
T Consensus 195 D~~~~rle~-----------aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~-~~~~~gaDVVIetag~pg~~ 262 (509)
T PRK09424 195 DTRPEVAEQ-----------VESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF-AEQAKEVDIIITTALIPGKP 262 (509)
T ss_pred eCCHHHHHH-----------HHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH-HhccCCCCEEEECCCCCccc
Confidence 875332210 023555533222222222345777764332222223344 4455679999999999 999
Q ss_pred CCcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHH
Q 001559 315 FPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAK 394 (1053)
Q Consensus 315 ~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~ 394 (1053)
+|++|++++++.| | ||++|+|++||+|||||++.+ .+|++.. +||+|+|++|+|+++|+
T Consensus 263 aP~lit~~~v~~m-k---pGgvIVdvg~~~GG~~e~t~~----~~~v~~~-------------~gVti~Gv~n~P~~~p~ 321 (509)
T PRK09424 263 APKLITAEMVASM-K---PGSVIVDLAAENGGNCELTVP----GEVVVTD-------------NGVTIIGYTDLPSRLPT 321 (509)
T ss_pred CcchHHHHHHHhc-C---CCCEEEEEccCCCCCcccccC----ccceEeE-------------CCEEEEEeCCCchhHHH
Confidence 9999999999996 5 899999999999999998553 2455532 48999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCCCC-cC-CHHHHhhhhhcCCeecCCCC
Q 001559 395 EASQHFGDILLEFIGSLSS--TVDFT-EL-PSHLRRACIAHGGALTTLYE 440 (1053)
Q Consensus 395 ~AS~~fs~~l~~~l~~l~~--~~~~~-~~-~~~l~~a~i~~~G~lt~~~~ 440 (1053)
+||++|++++++++..+.. ++.+. ++ |+++++++++++|+++++..
T Consensus 322 ~As~lla~~~i~l~~lIt~~~~g~~~~~~~d~vi~~~~~~~~G~i~~~~~ 371 (509)
T PRK09424 322 QSSQLYGTNLVNLLKLLCPEKDGNIVVDFDDVVIRGVTVVRDGEITWPPP 371 (509)
T ss_pred HHHHHHHhCCccHHHHhccCccchhhhcccCHHHhcCeEEECCEEecCCC
Confidence 9999999999999988762 33333 65 88999999999999999753
No 8
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-55 Score=493.21 Aligned_cols=374 Identities=30% Similarity=0.382 Sum_probs=325.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-CCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-PNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-~~~~~~~~d~~d~~~ 652 (1053)
+++|+|||+|++|+.+|..|+++++ .+|+|+||+.++++++.+.. +++++.++|+.|.+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d-------------------~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~a 61 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD-------------------GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDA 61 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC-------------------ceEEEEeCCHHHHHHHHhhccccceeEEecccChHH
Confidence 5789999999999999999999873 48999999999999997763 578999999999999
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHh
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHA 732 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~ 732 (1053)
+.++|++.|+||||+|++.+..++++|+++|+||+|+||..+...++++.|+++|++++++||+|||++|+++.+++++.
T Consensus 62 l~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~ 141 (389)
T COG1748 62 LVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKEL 141 (389)
T ss_pred HHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999877666899999999999999999999999999999998876
Q ss_pred hhccCceEEEEeeccCCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecCCCccccceEEEecCCCcceee
Q 001559 733 HVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALE 812 (1053)
Q Consensus 733 ~~~~~~v~sf~~~~Gg~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~~~~~~~~~~~~~p~~~~~~le 812 (1053)
. ++++++.+|||++|.+ .+||++|+++|||+++|++|.+|+++|+||+|++|++++.. +.++||..+-...+
T Consensus 142 ~---~~i~si~iy~g~~g~~--~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~~~~~---~~~~~~~~G~~~~y 213 (389)
T COG1748 142 F---DEIESIDIYVGGLGEH--GDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDPLEER---EVFEFPVIGYGDVY 213 (389)
T ss_pred h---ccccEEEEEEecCCCC--CCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecCcccc---cccccCCCCceeEE
Confidence 4 3799999999999965 48999999999999999999999999999999999998876 46677766655667
Q ss_pred cccCCCccccccccCcCcCccccceeeeecccHHHHHHHHHHcCCCCCCCcccccCCCCCCHHHHHHHHhhcccccCCCC
Q 001559 813 CLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEA 892 (1053)
Q Consensus 813 ~~~n~dsl~~~~~ygi~~~~~~l~r~TlRy~G~~~~~~~l~~lGLl~~~~~~~~~~g~~~s~~~~~~~~l~~~~~~~~~~ 892 (1053)
++++.+...+.+. +++..++++++|+||+||.+.|++|++|||++.+|+++. +.++|++|++++|+.
T Consensus 214 ~~~~~el~sL~~~--i~~~~~~~~~~t~r~~g~~~~i~~L~~lGll~~~~v~~~---~~i~p~eflk~vl~~-------- 280 (389)
T COG1748 214 AFYHDELRSLVKT--IPGVVRTRFEMTFRYPGHLEVIKALRDLGLLSREPVKVQ---QEIVPLEFLKAVLPD-------- 280 (389)
T ss_pred ecCCccHHHHHHh--CcccceeeEEeecCcccHHHHHHHHHHcCCCcccccccc---cccchHHHHHHhccc--------
Confidence 7776554444443 423579999999999999999999999999999997653 788888888887642
Q ss_pred CCChHHHHHHHHhcCccchhhhHHHHHHHHHhhccccCcccCCCCCChhHHhHHHHHHhhcCCCCCCceEEEEEEEEEEc
Q 001559 893 PLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEF 972 (1053)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~~~~~~~L~~kl~~~p~e~D~v~m~~~v~~~~ 972 (1053)
++++.|+..|.+++.++++|.
T Consensus 281 ----------------------------------------------------------~~s~~~~~~d~t~i~v~v~G~- 301 (389)
T COG1748 281 ----------------------------------------------------------PLSLAPDYKDVTVIGVEVKGT- 301 (389)
T ss_pred ----------------------------------------------------------ccccCCCcCceEEEEEEEEEE-
Confidence 345788899999999999996
Q ss_pred CCCeeeeeEEEEEEEeccccCCCcccchhhhhhHHHHHHHHHHHcCccCCCceecccCCCccHHHHHHHHhCCCEE
Q 001559 973 PDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQAYGIKL 1048 (1053)
Q Consensus 973 ~~g~~~~~~~~tl~~~g~~~~~~~~tAMa~ttG~p~aiaA~lil~g~i~~~GV~~P~~~~~y~p~L~~L~~~GI~~ 1048 (1053)
+||+. +++.+...+|...+.+.+.|+|+.|||.|++++|+++++|+|..+||+.||...+ .+++..+-.+|+.+
T Consensus 302 kdG~~-~~~~y~~~~~~~~~~~~~~~ais~ttg~pa~~~a~ll~~g~~~~~Gv~~~E~l~~-~~~~~~~~~~~l~~ 375 (389)
T COG1748 302 KDGRD-KTVFYNVKDHAEAYSEVGSSAISYTTGVPAAIGAELLAEGEWETPGVVNPEELGP-DPFLEKLLIRGLPW 375 (389)
T ss_pred EcCee-eEEEecchhhHHHhhccccceeehhccccHHHHHHHHHcCCCCcCcEecHHHhCC-ChhHHHHhhccCcc
Confidence 99988 5555555566555566789999999999999999999999999999999998776 67788888887654
No 9
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=100.00 E-value=1.5e-52 Score=486.32 Aligned_cols=377 Identities=37% Similarity=0.513 Sum_probs=318.0
Q ss_pred EEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc--CCCceEEEecCCCHHHHH
Q 001559 577 VLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG--IPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 577 VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~--~~~~~~~~~d~~d~~~l~ 654 (1053)
|+|||+|.+|+.++++|++++.+ .+|+|++|+.++++++++. ..+++.+++|+.|.++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~------------------~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 62 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF------------------EEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLA 62 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-------------------EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC------------------CcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHH
Confidence 78999999999999999998732 2899999999999999875 346899999999999999
Q ss_pred HhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhh
Q 001559 655 KCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHV 734 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~ 734 (1053)
++++++|+||||+|++.+..++++|+++|+||+|.+|....+.+|+++|+++|++++.+||++||++|+++++++++++.
T Consensus 63 ~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~~ 142 (386)
T PF03435_consen 63 ELLRGCDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELDA 142 (386)
T ss_dssp HHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHHH
T ss_pred HHHhcCCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhhh
Confidence 99999999999999989999999999999999999887788899999999999999999999999999999999999976
Q ss_pred ccCceEEEEeeccCCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecCCCccccceEEEecC--CCcceee
Q 001559 735 RKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIAD--LPAFALE 812 (1053)
Q Consensus 735 ~~~~v~sf~~~~Gg~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~~~~~~~~~~~~~p~--~~~~~le 812 (1053)
..+++++|.+|||+.|.|+.+++|++|+++|||++++.++.+|+++++||+++++++.+.. +.++||. .++..++
T Consensus 143 ~~~~v~~~~~~~g~~~~p~~~~~~~~~~~~ws~~~~l~e~~~~~~~~~~G~~~~v~~~~~~---~~~~f~~~~~~~~~~~ 219 (386)
T PF03435_consen 143 EGDEVESVDIYVGGLPAPEAPDNPLGYKFTWSPEGVLEEYSPPARVYRDGKWVEVPPFSEE---ERVDFPYPIGPGGAYE 219 (386)
T ss_dssp TTHEEEEEEEEEEEEEEGCG--TTTSEEBSS-HHHHHHHHCS-EEEEETTEEEEEETTTTC---CCETEEE-SSTTECEE
T ss_pred hcccceEEEEEEccccCCCCCCCCcccceeeeehhhHHhhcccceEeeCCEEEEecCcccc---ceeeeeeEecccceee
Confidence 7778999999999998888999999999999999999999999999999999999988765 4445543 4456789
Q ss_pred cccCCCccccccccCcCcCccccceeeeecccHHHHHHHHHHcCCCCCCCcccccCCCCCCHHHHHHHHhhcccccCCCC
Q 001559 813 CLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEA 892 (1053)
Q Consensus 813 ~~~n~dsl~~~~~ygi~~~~~~l~r~TlRy~G~~~~~~~l~~lGLl~~~~~~~~~~g~~~s~~~~~~~~l~~~~~~~~~~ 892 (1053)
++++++++.+...+++ +...++.++|+||+||++.|++|+++||+++++..+.
T Consensus 220 ~~~~~~~~~~~~~~~~-~~~~~~~~~t~r~~~~~~~~~~l~~lgl~~~~~~~~~-------------------------- 272 (386)
T PF03435_consen 220 AFHPEDSTLTRSFYGL-PEVRNVIRKTLRYPGFLNVMKLLKDLGLLSEEPVYVY-------------------------- 272 (386)
T ss_dssp EEEECBGTTHHHHTT--TTTSEEEEEEEEETTHHHHHHHHHHTTTTSHCBEGGG--------------------------
T ss_pred eecCcCCceeeEeecC-CCcccEEEEEeeEhhHHHHHHHHHhhcccCCccccch--------------------------
Confidence 9999999988888887 5556999999999999999999999999998874321
Q ss_pred CCChHHHHHHHHhcCccchhhhHHHHHHHHHhhccccCcccCCCCCChhHHhHHHHHHhhcCCCCCCceEEEEEEEEEEc
Q 001559 893 PLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEF 972 (1053)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~~~~~~~L~~kl~~~p~e~D~v~m~~~v~~~~ 972 (1053)
.+|.++|+++|++++.+.|+++|+++|+|+++|..
T Consensus 273 ---------------------------------------------~~p~~~l~~~l~~~~~~~~~~~d~~~~~v~v~G~~ 307 (386)
T PF03435_consen 273 ---------------------------------------------VSPRDLLAALLEKRLRPGPGERDMVVLRVEVEGWD 307 (386)
T ss_dssp ---------------------------------------------SCHHHHHHHHHHHHSCTTTT-SEEEEEEEEEEEEE
T ss_pred ---------------------------------------------hhHHHHHHhhChhhcCCcccccCceeEEEEEEEEe
Confidence 24777888888899999999999999999999977
Q ss_pred CCCeeeeeEEEEEE-EeccccCCCcccchhhhhhHHHHHHHHHHHcCccCCCceeccc---CCCccHHHHHHHHhCCCEE
Q 001559 973 PDGQPSENNRATLL-EFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPI---EPEVYVPALDMLQAYGIKL 1048 (1053)
Q Consensus 973 ~~g~~~~~~~~tl~-~~g~~~~~~~~tAMa~ttG~p~aiaA~lil~g~i~~~GV~~P~---~~~~y~p~L~~L~~~GI~~ 1048 (1053)
++|++ ...++++. .+++. .+.+.++|+++||+|+|++|+++++|++..+||++|| ++++|.++|++|+++||++
T Consensus 308 ~~G~~-~~~~~~~~~~~~~~-~~~~~~~m~~~tg~~~ai~a~ll~~g~~~~~GV~~PE~~~~~~~~~~~l~~l~~~GI~~ 385 (386)
T PF03435_consen 308 KDGKP-VRRTSYLVYPSGDP-IETGGSAMARTTGIPAAIAAQLLADGEITRPGVVPPEAAFDPDPFEDLLEELAKRGIPF 385 (386)
T ss_dssp TTCEE-EEEEEEEEEEEEEC-CCSSCHHHHHHHHHHHHHHHHHHHTTSSH-SEEE-SHHCCSHHHHHHHHHHHHHHCEEE
T ss_pred CCCCE-EEEEEeeceecccc-cCCCCCccHHHhhHHHHHHHHHHHCCCcCCCeEECHHHhCCCchHHHHHHHHHcCCCCc
Confidence 99998 66677776 44443 3567899999999999999999999999999999995 4578889999999999986
No 10
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=99.95 E-value=8.3e-29 Score=245.80 Aligned_cols=126 Identities=27% Similarity=0.404 Sum_probs=103.7
Q ss_pred EEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccCC----CcCCEEEeecC
Q 001559 10 GILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDL----SECGLVLGIKQ 83 (1053)
Q Consensus 10 Gi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~~----~~adiIl~Vk~ 83 (1053)
||+||++ +||+||||+|++|++|++.| |+|+||+|+ +++|+|++|++|||+|+++. ++|||||+||+
T Consensus 1 Gi~kE~~-~~E~RVal~P~~v~~L~~~G------~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~ 73 (136)
T PF05222_consen 1 GIPKESK-PGERRVALTPEDVKKLVKLG------HEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKP 73 (136)
T ss_dssp EE-B--S-TT---BSS-HHHHHHHHHTT------SEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-
T ss_pred CccCcCC-CCCcEecccHHHHHHHHhCC------CEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECC
Confidence 8999988 99999999999999999999 999999999 89999999999999999753 57999999999
Q ss_pred CCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCC-CCcccchHHHHHHHH
Q 001559 84 PKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD-NGRRLLAFGKFAGRA 146 (1053)
Q Consensus 84 p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~-~~~~l~~fg~~AG~a 146 (1053)
|+.+++ .+|+++++|.|++ .|+++++.|+++|+|+||||+|||+ +++++..|+++|++|
T Consensus 74 p~~~e~~~l~~g~~li~~~~~~----~~~~~~~~l~~~~it~~a~E~ipr~s~aq~md~lss~a~iA 136 (136)
T PF05222_consen 74 PSEEELALLKPGQTLIGFLHPA----QNKELLEALAKKGITAFALELIPRISRAQSMDVLSSQANIA 136 (136)
T ss_dssp --GGGGGGS-TTCEEEEE--GG----GHHHHHHHHHHCTEEEEEGGGSBSSGGGGGGTHHHHHHHHH
T ss_pred CCHHHHhhcCCCcEEEEeeccc----cCHHHHHHHHHCCCEEEEhhhCcCCcCCcCcccchhhhccC
Confidence 977654 6999999999987 4999999999999999999999996 888898999998876
No 11
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=99.95 E-value=1.6e-29 Score=260.59 Aligned_cols=162 Identities=37% Similarity=0.608 Sum_probs=119.0
Q ss_pred chhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhhcccccCCCCcccceEEEeeeeccccccc
Q 001559 191 GEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVE 270 (1053)
Q Consensus 191 g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~ 270 (1053)
|..+.+.|.+.+++|++|+|+|+|+||+||+++|++||++++.+++..+..++... .+ .+.+.+...++..
T Consensus 6 g~~~~~~~~~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~---~~------~~~i~~~~~~~~~ 76 (168)
T PF01262_consen 6 GGKGMLLGGPGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLES---LG------AYFIEVDYEDHLE 76 (168)
T ss_dssp SSSSHEECTTTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH---TT------TEESEETTTTTTT
T ss_pred CccceeccCCCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhc---cc------CceEEEccccccc
Confidence 44555666677999999999999999999999999999996666554433332100 11 1224444334343
Q ss_pred ccCCCCCccccccccCccCcCcchhhhccCCCcEEEE-cccccCCCCcccCHHHHHHhhcCCCCceEEEEEeecCCCcee
Q 001559 271 HKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVN-CMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLE 349 (1053)
Q Consensus 271 ~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn-~a~~g~~~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE 349 (1053)
++ .|++++|+++|+.|++.|++.+. .+|+||+ +.+|++++|+|||++|+++| + ||+||+|||||+|||||
T Consensus 77 ~~----~~~~~~~~~~~~~~~~~f~~~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m-~---~gsvIvDis~D~gG~iE 147 (168)
T PF01262_consen 77 RK----DFDKADYYEHPESYESNFAEFIA-PADIVIGNGLYWGKRAPRLVTEEMVKSM-K---PGSVIVDISCDQGGSIE 147 (168)
T ss_dssp SB-----CCHHHCHHHCCHHHHHHHHHHH-H-SEEEEHHHBTTSS---SBEHHHHHTS-S---TTEEEEETTGGGT-SBT
T ss_pred cc----ccchhhhhHHHHHhHHHHHHHHh-hCcEEeeecccCCCCCCEEEEhHHhhcc-C---CCceEEEEEecCCCCcC
Confidence 33 39999999999999999966555 5698885 66679999999999999996 5 89999999999999999
Q ss_pred eecccccccCCeEEeCCCCCCcCCCCCCCCeEEEe
Q 001559 350 FVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQA 384 (1053)
Q Consensus 350 ~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~ 384 (1053)
|+ ++||+++|+|.++ ||+|||
T Consensus 148 ~t-~~~T~~~p~~~~~-------------GV~~~~ 168 (168)
T PF01262_consen 148 TT-RPTTHADPTYEKN-------------GVTHYG 168 (168)
T ss_dssp TE-ETTBTTCEEEEET-------------TEEEEE
T ss_pred cc-ccCCCCCCeEEeC-------------CEEEEC
Confidence 85 7888999999975 999997
No 12
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=99.95 E-value=6.2e-28 Score=265.58 Aligned_cols=231 Identities=20% Similarity=0.213 Sum_probs=187.8
Q ss_pred ccccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCccc
Q 001559 474 SGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRD 545 (1053)
Q Consensus 474 ~gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~ 545 (1053)
-+||+||.+||.+ ++..|.+..|..|.|++++ +...+.++|||+|||+++++++|++|+.|+.+||||
T Consensus 16 i~HS~SP~~Hn~~---~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~~~A~~iGAVN- 91 (283)
T COG0169 16 ISHSLSPRMHNAA---FRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELSPRARLIGAVN- 91 (283)
T ss_pred cccCcCHHHHHHH---HHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCCHHHHHhCCce-
Confidence 3699999999999 9999999999999999766 678899999999999999999999999999999999
Q ss_pred cccceee-cceeeeeeeccc------ccCCC-CCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCc
Q 001559 546 QISGINR-ISLRIGKVQETA------TQKGP-GTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQND 617 (1053)
Q Consensus 546 ~~~~~~~-~~~~~g~~~~~~------~~~~~-~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~ 617 (1053)
|.+++ .+++.|||||.. .+.+. ...+.++|+|+|+|+++++++..|++.| +
T Consensus 92 --Tl~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g-~------------------ 150 (283)
T COG0169 92 --TLVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAG-A------------------ 150 (283)
T ss_pred --EEEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcC-C------------------
Confidence 47777 589999999771 11111 2345789999999999999999999998 2
Q ss_pred cEEEEEECCHHHHHHHHhcCCCce-EEEecCCCHHHHHHhhccccEEEecCCccccHH-----HHHHHHHhCCeEEEeec
Q 001559 618 IRVLVASLYLKDAEEVIEGIPNAE-AVQLDVSDHKSLCKCISQVEIVISLLPASCHVM-----VANACIEFKKHLVTASY 691 (1053)
Q Consensus 618 ~~v~v~~r~~~~a~~l~~~~~~~~-~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~-----v~~aci~~g~~~vD~sy 691 (1053)
.+|+|++|+.+|++++++.++... .+... +..++... .++|+|||+||.+|... +...++..+..++|+.|
T Consensus 151 ~~i~V~NRt~~ra~~La~~~~~~~~~~~~~--~~~~~~~~-~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY 227 (283)
T COG0169 151 KRITVVNRTRERAEELADLFGELGAAVEAA--ALADLEGL-EEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVY 227 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhhhcccccccc--cccccccc-cccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEecc
Confidence 389999999999999998876321 11111 11112111 17999999999998642 33578899999999999
Q ss_pred cChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 692 IDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 692 ~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
.|.+|..| +.|+++|+.+++|.| ||..|. +++|++|+|..|
T Consensus 228 ~P~~TplL-~~A~~~G~~~idGl~-------Mlv~Qa----------a~aF~lwtg~~p 268 (283)
T COG0169 228 NPLETPLL-REARAQGAKTIDGLG-------MLVHQA----------AEAFELWTGVEP 268 (283)
T ss_pred CCCCCHHH-HHHHHcCCeEECcHH-------HHHHHH----------HHHHHHHhCCCC
Confidence 99998766 799999999999999 576553 567889999865
No 13
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=99.94 E-value=1.6e-27 Score=266.20 Aligned_cols=231 Identities=17% Similarity=0.216 Sum_probs=189.7
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
.||+||.+||.+ ++..+.++.|..|+|.+++ +...+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 20 ~hS~SP~ihn~~---f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~iGavNT- 95 (289)
T PRK12548 20 GHSGSPAMYNYS---FQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELSPAARIIGAVNT- 95 (289)
T ss_pred ccccCHHHHHHH---HHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCCHHHHHhCceeE-
Confidence 499999999999 8889999999999999755 4568999999999999999999999999999999996
Q ss_pred ccceeecceeeeeeecccc------cCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETAT------QKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++|||||..- ..+. ..+.++++|+|+|++|++++..|++.| + .+|
T Consensus 96 --i~~~~g~l~G~NTD~~G~~~~l~~~~~-~~~~k~vlI~GAGGagrAia~~La~~G-~------------------~~V 153 (289)
T PRK12548 96 --IVNDDGKLTGHITDGLGFVRNLREHGV-DVKGKKLTVIGAGGAATAIQVQCALDG-A------------------KEI 153 (289)
T ss_pred --EEeECCEEEEEecCHHHHHHHHHhcCC-CcCCCEEEEECCcHHHHHHHHHHHHCC-C------------------CEE
Confidence 45678899999997611 1112 345688999999999999999999887 2 269
Q ss_pred EEEECCH---HHHHHHHhcC----CCceEEEecCCCHHHHHHhhccccEEEecCCccccH-----HH-HHHHHHhCCeEE
Q 001559 621 LVASLYL---KDAEEVIEGI----PNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV-----MV-ANACIEFKKHLV 687 (1053)
Q Consensus 621 ~v~~r~~---~~a~~l~~~~----~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-----~v-~~aci~~g~~~v 687 (1053)
.|++|+. ++++++++.+ +.+....+|+++.+++.+.+..+|+|||+||.+|++ ++ ....+..+..++
T Consensus 154 ~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~ 233 (289)
T PRK12548 154 TIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVA 233 (289)
T ss_pred EEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEE
Confidence 9999996 7888877654 234456678877777888888999999999999853 22 234577788899
Q ss_pred EeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCC
Q 001559 688 TASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGL 749 (1053)
Q Consensus 688 D~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~ 749 (1053)
|+.|.|.+|..| +.|+++|+.+++|.+ ||..|. +.+|++|+|..
T Consensus 234 D~vY~P~~T~ll-~~A~~~G~~~~~G~~-------ML~~Qa----------~~~f~lwtg~~ 277 (289)
T PRK12548 234 DTVYNPKKTKLL-EDAEAAGCKTVGGLG-------MLLWQG----------AEAYKLYTGKD 277 (289)
T ss_pred EecCCCCCCHHH-HHHHHCCCeeeCcHH-------HHHHHH----------HHHHHHhcCCC
Confidence 999999888666 799999999999999 576654 45678899864
No 14
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=99.94 E-value=4e-27 Score=262.14 Aligned_cols=232 Identities=16% Similarity=0.186 Sum_probs=183.2
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
.||+||.+||.+ ++..+.++.|..|+|.+++ +.+.+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 18 ~hSlSP~ihn~~---f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~~~A~~iGAVNT- 93 (288)
T PRK12749 18 RHSLSPEMQNKA---LEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINT- 93 (288)
T ss_pred ccccCHHHHHHH---HHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhCceeE-
Confidence 499999999999 8889999999999999755 5667999999999999999999999999999999996
Q ss_pred ccceeecceeeeeeecccc------cCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETAT------QKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++|||||..- ..+. ..+.++++|||+|+++++++..|+..| + .+|
T Consensus 94 --v~~~~g~l~G~NTD~~Gf~~~l~~~~~-~~~~k~vlvlGaGGaarAi~~~l~~~g-~------------------~~i 151 (288)
T PRK12749 94 --IVNDDGYLRGYNTDGTGHIRAIKESGF-DIKGKTMVLLGAGGASTAIGAQGAIEG-L------------------KEI 151 (288)
T ss_pred --EEccCCEEEEEecCHHHHHHHHHhcCC-CcCCCEEEEECCcHHHHHHHHHHHHCC-C------------------CEE
Confidence 45567889999997611 1222 456689999999999999999999877 2 389
Q ss_pred EEEECC---HHHHHHHHhcCCC---ceEEEecCCCHHHHHHhhccccEEEecCCccccHH------HHHHHHHhCCeEEE
Q 001559 621 LVASLY---LKDAEEVIEGIPN---AEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVM------VANACIEFKKHLVT 688 (1053)
Q Consensus 621 ~v~~r~---~~~a~~l~~~~~~---~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~------v~~aci~~g~~~vD 688 (1053)
+|++|+ .++++++++.++. ......+..+.+.+.+.+.++|+|||+||.+|.+. .....++.+..++|
T Consensus 152 ~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D 231 (288)
T PRK12749 152 KLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTE 231 (288)
T ss_pred EEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEE
Confidence 999999 4699999887642 11111222122234556678999999999988531 12345677888999
Q ss_pred eeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 689 ASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 689 ~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
+.|.|.+|..| ++|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 232 ~vY~P~~T~ll-~~A~~~G~~~~~Gl~-------ML~~Qa----------~~~f~lwtg~~~ 275 (288)
T PRK12749 232 CVYNPHMTKLL-QQAQQAGCKTIDGYG-------MLLWQG----------AEQFTLWTGKDF 275 (288)
T ss_pred ecCCCccCHHH-HHHHHCCCeEECCHH-------HHHHHH----------HHHHHHhcCCCC
Confidence 99999888555 799999999999999 576653 456788998643
No 15
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=99.94 E-value=4.5e-27 Score=260.90 Aligned_cols=233 Identities=16% Similarity=0.170 Sum_probs=182.3
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCC-----CC--------cCccccccccCCCCcchhhhhhcccccchhccC
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQ-----ST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASE 541 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~-----~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g 541 (1053)
+||+||.+||.+ ++..+.+..|..|.|.+ ++ +.+++.++|||+|||+.+++++|++++.|+.+|
T Consensus 15 ~hS~SP~ihn~~---f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~l~~~A~~iG 91 (283)
T PRK14027 15 DLSRTPAMHEAE---GLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLG 91 (283)
T ss_pred cccCCHHHHHHH---HHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhhCCHHHHHhC
Confidence 599999999999 88999999999999874 33 467899999999999999999999999999999
Q ss_pred Ccccccccee-ecceeeeeeecccc----c-CCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCC
Q 001559 542 NNRDQISGIN-RISLRIGKVQETAT----Q-KGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQ 615 (1053)
Q Consensus 542 ~~n~~~~~~~-~~~~~~g~~~~~~~----~-~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~ 615 (1053)
+||| ++. +.++++|||||..- . ......+.++|+|+|+|++|++++..|++.| +
T Consensus 92 AVNT---v~~~~~g~l~G~NTD~~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~g-~---------------- 151 (283)
T PRK14027 92 AVNT---VVIDATGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHG-V---------------- 151 (283)
T ss_pred CceE---EEECCCCcEEEEcCCHHHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHCC-C----------------
Confidence 9996 444 47789999997611 1 1111345689999999999999999999887 2
Q ss_pred CccEEEEEECCHHHHHHHHhcCCC-ceEEEecCCCHHHHHHhhccccEEEecCCccccH----HHHHHHHHhCCeEEEee
Q 001559 616 NDIRVLVASLYLKDAEEVIEGIPN-AEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV----MVANACIEFKKHLVTAS 690 (1053)
Q Consensus 616 ~~~~v~v~~r~~~~a~~l~~~~~~-~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~----~v~~aci~~g~~~vD~s 690 (1053)
.+|+|++|+.++++++++.+.. .........+...+.+.+.++|+|||+||.+|.. ++....+..+..++|+.
T Consensus 152 --~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~v 229 (283)
T PRK14027 152 --QKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVV 229 (283)
T ss_pred --CEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcc
Confidence 3799999999999999876531 1100011112233344557899999999998852 23345677788899999
Q ss_pred ccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 691 YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 691 y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
|.|.+|..| +.|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 230 Y~P~~T~ll-~~A~~~G~~~~~Gl~-------MLv~Qa----------~~~f~lw~G~~~ 271 (283)
T PRK14027 230 YMPIETELL-KAARALGCETLDGTR-------MAIHQA----------VDAFRLFTGLEP 271 (283)
T ss_pred cCCCCCHHH-HHHHHCCCEEEccHH-------HHHHHH----------HHHHHHHhCCCC
Confidence 999888666 799999999999999 575553 457788999644
No 16
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=99.94 E-value=6.5e-27 Score=260.35 Aligned_cols=228 Identities=16% Similarity=0.198 Sum_probs=183.1
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeC-----CCC--------cCccccccccCCCCcchhhhhhcccccchhccC
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVG-----QST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASE 541 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~-----~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g 541 (1053)
+||+||.+||.+ ++..+.++.|..|.|. +++ +.+++.++|||+|||+.+++++|++++.|+.+|
T Consensus 16 ~hS~SP~ihn~~---f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D~~~~~A~~iG 92 (284)
T PRK12549 16 QASLSPAMHEAE---GDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHLDELSDDARALG 92 (284)
T ss_pred ccccCHHHHHHH---HHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhC
Confidence 599999999999 8899999999999985 333 466889999999999999999999999999999
Q ss_pred Cccccccceeecceeeeeeeccccc-----CCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCC
Q 001559 542 NNRDQISGINRISLRIGKVQETATQ-----KGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQN 616 (1053)
Q Consensus 542 ~~n~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~ 616 (1053)
+||| ++++.++++|||||..-- ......+.++|+|||+|++|++++..|+..| +
T Consensus 93 AvNT---v~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G-~----------------- 151 (284)
T PRK12549 93 AVNT---VVFRDGRRIGHNTDWSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLG-V----------------- 151 (284)
T ss_pred CceE---EEecCCEEEEEcCCHHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcC-C-----------------
Confidence 9996 566788999999976111 1112356689999999999999999999887 3
Q ss_pred ccEEEEEECCHHHHHHHHhcCC----CceEEEecCCCHHHHHHhhccccEEEecCCccccH----HHHHHHHHhCCeEEE
Q 001559 617 DIRVLVASLYLKDAEEVIEGIP----NAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV----MVANACIEFKKHLVT 688 (1053)
Q Consensus 617 ~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~----~v~~aci~~g~~~vD 688 (1053)
.+|+|++|+.++++++++.+. ...+. . .+++.+.++++|+||||||.+|.. ++....++.+..++|
T Consensus 152 -~~I~I~nR~~~ka~~la~~l~~~~~~~~~~--~---~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~D 225 (284)
T PRK12549 152 -ERLTIFDVDPARAAALADELNARFPAARAT--A---GSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVAD 225 (284)
T ss_pred -CEEEEECCCHHHHHHHHHHHHhhCCCeEEE--e---ccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEE
Confidence 379999999999999987653 12221 1 133455678899999999998742 233456778888999
Q ss_pred eeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 689 ASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 689 ~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
++|.|.+|..| +.|+++|+.+++|.+ ||.+|. +.+|++|+|..|
T Consensus 226 ivY~P~~T~ll-~~A~~~G~~~~~G~~-------ML~~Qa----------~~~f~~wtg~~~ 269 (284)
T PRK12549 226 IVYFPLETELL-RAARALGCRTLDGGG-------MAVFQA----------VDAFELFTGREP 269 (284)
T ss_pred eeeCCCCCHHH-HHHHHCCCeEecCHH-------HHHHHH----------HHHHHHhcCCCC
Confidence 99999888555 799999999999999 576653 456788998643
No 17
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=99.93 E-value=1.5e-26 Score=257.28 Aligned_cols=229 Identities=17% Similarity=0.140 Sum_probs=184.8
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
+||+||.+||.+ ++..+.++.|..|+|++++ +..++.++|||+|||+.+++++|++|+.|+.+|+|||
T Consensus 16 ~hS~SP~~hn~~---~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~igavNt- 91 (278)
T PRK00258 16 AHSKSPLIHNAA---FKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSERARLIGAVNT- 91 (278)
T ss_pred hcccCHHHHHHH---HHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCHHHHHhCCceE-
Confidence 499999999999 8899999999999998755 4667899999999999999999999999999999996
Q ss_pred ccceeecceeeeeeeccc----ccC--CCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETA----TQK--GPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~----~~~--~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++||||+.. ... .....+.++|+|+|+|++|++++++|+..| + .+|
T Consensus 92 --v~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g-~------------------~~V 150 (278)
T PRK00258 92 --LVLEDGRLIGDNTDGIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLG-V------------------AEI 150 (278)
T ss_pred --EEeeCCEEEEEcccHHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcC-C------------------CEE
Confidence 4567889999999762 111 111456789999999999999999999887 2 389
Q ss_pred EEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCccccH-----HHHHHHHHhCCeEEEeeccChh
Q 001559 621 LVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV-----MVANACIEFKKHLVTASYIDDS 695 (1053)
Q Consensus 621 ~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-----~v~~aci~~g~~~vD~sy~~~~ 695 (1053)
+|++|+.++++++++.+.....+.++. ++.+.+.++|+||||||.++++ ++...++..+..++|++|.|..
T Consensus 151 ~v~~R~~~~a~~l~~~~~~~~~~~~~~----~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~ 226 (278)
T PRK00258 151 TIVNRTVERAEELAKLFGALGKAELDL----ELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLP 226 (278)
T ss_pred EEEeCCHHHHHHHHHHhhhccceeecc----cchhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCC
Confidence 999999999999988765321111111 2346678899999999998863 4456788889999999998887
Q ss_pred HHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 696 MSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 696 ~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
+..| +.|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 227 T~ll-~~A~~~G~~~~~G~~-------Ml~~Qa----------~~~f~~wtg~~~ 263 (278)
T PRK00258 227 TPFL-AWAKAQGARTIDGLG-------MLVHQA----------AEAFELWTGVRP 263 (278)
T ss_pred CHHH-HHHHHCcCeecCCHH-------HHHHHH----------HHHHHHHcCCCC
Confidence 7555 799999999999988 576654 346778998643
No 18
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=99.92 E-value=1.3e-25 Score=249.84 Aligned_cols=231 Identities=16% Similarity=0.121 Sum_probs=178.7
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCC-CC-----c--CccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQ-ST-----E--ALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~-~s-----~--~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
+||+||.+||.+ ++..+.+..|..|.+.+ ++ . ..++.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 16 ~hS~SP~ihn~~---f~~~gl~~~y~~~~~~~~~~l~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~iGAVNT- 91 (282)
T TIGR01809 16 AHSRSPHLHNAG---YEILGLPDKTYEFETCSAEELKEVLSGFGPQFGGASVTIPLKFAILRFADEHTDRASLIGSVNT- 91 (282)
T ss_pred hhccCHHHHHHH---HHHcCCCcEEEeeecCCHHHHHHHHHhcCCCCcEEEECCCCHHHHHHHhhcCCHHHHHhCceeE-
Confidence 599999999999 88889999999999864 33 3 447889999999999999999999999999999996
Q ss_pred cccee-ecceeeeeeecc------cccCCC-CCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc
Q 001559 547 ISGIN-RISLRIGKVQET------ATQKGP-GTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI 618 (1053)
Q Consensus 547 ~~~~~-~~~~~~g~~~~~------~~~~~~-~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 618 (1053)
+++ +.++++|||||. -.+.+. ...+.++|+|||+|++|++++..|++.| + .
T Consensus 92 --v~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G-~------------------~ 150 (282)
T TIGR01809 92 --LLRTQNGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASLG-V------------------T 150 (282)
T ss_pred --EEEcCCCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHcC-C------------------C
Confidence 444 467899999976 111221 1346789999999999999999999887 3 3
Q ss_pred EEEEEECCHHHHHHHHhcCCCc-eEEEecCCCHHHHHHhhccccEEEecCCccccHHH--HHH--------HHHhCCeEE
Q 001559 619 RVLVASLYLKDAEEVIEGIPNA-EAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMV--ANA--------CIEFKKHLV 687 (1053)
Q Consensus 619 ~v~v~~r~~~~a~~l~~~~~~~-~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v--~~a--------ci~~g~~~v 687 (1053)
+|+|++|+.++++++++.+... ....++ ..+++...+.++|+||||||.++.... ... .+..+..++
T Consensus 151 ~i~I~nRt~~ka~~La~~~~~~~~~~~~~--~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~ 228 (282)
T TIGR01809 151 DITVINRNPDKLSRLVDLGVQVGVITRLE--GDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFL 228 (282)
T ss_pred eEEEEeCCHHHHHHHHHHhhhcCcceecc--chhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEE
Confidence 7999999999999999876421 111111 123455667889999999998874221 111 123567899
Q ss_pred EeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 688 TASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 688 D~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
|+.|.|.++..| +.|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 229 D~vY~P~~T~ll-~~A~~~G~~~~~Gl~-------MLv~Qa----------~~~f~lwtg~~~ 273 (282)
T TIGR01809 229 DAAYDPWPTPLV-AIVSAAGWRVISGLQ-------MLLHQG----------FAQFEQWTGMPA 273 (282)
T ss_pred EEeeCCCCCHHH-HHHHHCCCEEECcHH-------HHHHHH----------HHHHHHHHCCCC
Confidence 999999888655 799999999999998 575553 456788998643
No 19
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=99.92 E-value=2.1e-25 Score=247.19 Aligned_cols=226 Identities=19% Similarity=0.180 Sum_probs=180.3
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
+||+||.+||.+ ++..+.++.|..|.|.+++ +...+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 11 ~hS~SP~~hn~~---~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~~gavNt- 86 (270)
T TIGR00507 11 AHSKSPLIHNAF---FKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKLAGAVNT- 86 (270)
T ss_pred ccccCHHHHHHH---HHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHHhCCceE-
Confidence 599999999999 8889999999999999765 4568999999999999999999999999999999996
Q ss_pred ccceeecceeeeeeecccc------cCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETAT------QKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++||||+... +.+. ..+.++++|+|+|++|++++..|++.+ .+|
T Consensus 87 --i~~~~g~l~g~NTD~~G~~~~l~~~~~-~~~~k~vliiGaGg~g~aia~~L~~~g--------------------~~v 143 (270)
T TIGR00507 87 --LKLEDGKLVGYNTDGIGLVSDLERLIP-LRPNQRVLIIGAGGAARAVALPLLKAD--------------------CNV 143 (270)
T ss_pred --EEeeCCEEEEEcCCHHHHHHHHHhcCC-CccCCEEEEEcCcHHHHHHHHHHHHCC--------------------CEE
Confidence 45678899999997611 1112 345688999999999999999999876 389
Q ss_pred EEEECCHHHHHHHHhcCCCc-eEEEecCCCHHHHHHhhccccEEEecCCccccH-----HHHHHHHHhCCeEEEeeccCh
Q 001559 621 LVASLYLKDAEEVIEGIPNA-EAVQLDVSDHKSLCKCISQVEIVISLLPASCHV-----MVANACIEFKKHLVTASYIDD 694 (1053)
Q Consensus 621 ~v~~r~~~~a~~l~~~~~~~-~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-----~v~~aci~~g~~~vD~sy~~~ 694 (1053)
.+++|+.++++++++.+... ....... ++ ..+.++|+||||||.++.. ++....++.++.++|++|.++
T Consensus 144 ~v~~R~~~~~~~la~~~~~~~~~~~~~~---~~--~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~ 218 (270)
T TIGR00507 144 IIANRTVSKAEELAERFQRYGEIQAFSM---DE--LPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPG 218 (270)
T ss_pred EEEeCCHHHHHHHHHHHhhcCceEEech---hh--hcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCC
Confidence 99999999999888765421 1111111 11 2235799999999998753 233556788999999999998
Q ss_pred hHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 695 SMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 695 ~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
++ .|.++|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 219 ~T-~ll~~A~~~G~~~vdG~~-------Ml~~Qa----------~~~f~~w~g~~~ 256 (270)
T TIGR00507 219 ET-PFLAEAKSLGTKTIDGLG-------MLVAQA----------ALAFELWTGVEP 256 (270)
T ss_pred CC-HHHHHHHHCCCeeeCCHH-------HHHHHH----------HHHHHHHcCCCC
Confidence 88 466899999999999998 576654 446788998643
No 20
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=99.91 E-value=4.8e-25 Score=243.23 Aligned_cols=220 Identities=16% Similarity=0.147 Sum_probs=174.7
Q ss_pred ccccccchhhhhHHHHHcCCcEEEEEEEeCC-CC-----cCccccccccCCCCcchhhhhhcccccchhccCCccccccc
Q 001559 476 HLFDQFLINEALDIIEAAGGSFHLVKCQVGQ-ST-----EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQISG 549 (1053)
Q Consensus 476 Hl~d~~~~n~Aldv~~f~~g~v~lvef~V~~-~s-----~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~~~~ 549 (1053)
|++||.+||.+ ++..+.++.|..|...+ .. +.+++.++|||+|||+.+++++|++++.|+.+|+||| +
T Consensus 20 ~~~Sp~ihn~~---f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~~~A~~iGAVNT---i 93 (272)
T PRK12550 20 SNFGTRFHNYL---YEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELDPSAQAIESVNT---I 93 (272)
T ss_pred hhcCHHHHHHH---HHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCCHHHHHhCCeeE---E
Confidence 58999999999 77899999999998322 11 5668999999999999999999999999999999996 4
Q ss_pred eeecceeeeeeeccc------ccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE
Q 001559 550 INRISLRIGKVQETA------TQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA 623 (1053)
Q Consensus 550 ~~~~~~~~g~~~~~~------~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~ 623 (1053)
+++.++++|||||.. .+.+. ...++|+|+|+|++|++++..|++.+ + .+|+|+
T Consensus 94 ~~~~g~l~G~NTD~~Gf~~~L~~~~~--~~~~~vlilGaGGaarAi~~aL~~~g-~------------------~~i~i~ 152 (272)
T PRK12550 94 VNTDGHLKAYNTDYIAIAKLLASYQV--PPDLVVALRGSGGMAKAVAAALRDAG-F------------------TDGTIV 152 (272)
T ss_pred EeeCCEEEEEecCHHHHHHHHHhcCC--CCCCeEEEECCcHHHHHHHHHHHHCC-C------------------CEEEEE
Confidence 567889999999761 11222 23468999999999999999999887 2 379999
Q ss_pred ECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCccccH-------HHHHHHHHhCCeEEEeeccChhH
Q 001559 624 SLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV-------MVANACIEFKKHLVTASYIDDSM 696 (1053)
Q Consensus 624 ~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-------~v~~aci~~g~~~vD~sy~~~~~ 696 (1053)
+|+.++++++++.+. . +.. +.+. ..++|+||||||.+|+. ++....+..+..++|+.|.|.+|
T Consensus 153 nR~~~~a~~la~~~~-~-----~~~--~~~~--~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T 222 (272)
T PRK12550 153 ARNEKTGKALAELYG-Y-----EWR--PDLG--GIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAET 222 (272)
T ss_pred eCCHHHHHHHHHHhC-C-----cch--hhcc--cccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccC
Confidence 999999999988653 1 110 1111 24589999999998862 24455677788899999999888
Q ss_pred HHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 697 SKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 697 ~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
..| ++|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 223 ~ll-~~A~~~G~~~i~Gl~-------MLi~Qa----------~~~f~lwtg~~~ 258 (272)
T PRK12550 223 PLI-RYARARGKTVITGAE-------VIALQA----------VEQFVLYTGVRP 258 (272)
T ss_pred HHH-HHHHHCcCeEeCCHH-------HHHHHH----------HHHHHHHhCCCC
Confidence 666 799999999999988 576653 456788998644
No 21
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=99.87 E-value=1.5e-22 Score=240.41 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=174.6
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
+||+||.+||.+ +...|.++.|..|.|++++ ...++.++|||+|||+.+++++|++++.|+.+|||||
T Consensus 226 ~hS~SP~~hn~~---f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNT- 301 (477)
T PRK09310 226 DRSISHLSHNPL---FSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNT- 301 (477)
T ss_pred ccccCHHHHHHH---HHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceE-
Confidence 499999999999 8899999999999998755 5678999999999999999999999999999999995
Q ss_pred ccceeecceeeeeeecccc------cCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETAT------QKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++||||+..- +.+. ..+.++++|+|+|++|++++..|++.| .+|
T Consensus 302 --v~~~~g~l~G~NTD~~G~~~~l~~~~~-~~~~k~vlIiGaGgiG~aia~~L~~~G--------------------~~V 358 (477)
T PRK09310 302 --LVFRNGKIEGYNTDGEGLFSLLKQKNI-PLNNQHVAIVGAGGAAKAIATTLARAG--------------------AEL 358 (477)
T ss_pred --EEeeCCEEEEEecCHHHHHHHHHhcCC-CcCCCEEEEEcCcHHHHHHHHHHHHCC--------------------CEE
Confidence 55678899999997611 1122 456789999999999999999999887 378
Q ss_pred EEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHH
Q 001559 621 LVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLD 700 (1053)
Q Consensus 621 ~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~ 700 (1053)
.+++|+.++++++++.++. .. .+ .+++.+ +.++|+||||+|.++... ..+. ..++|++|.|.++. |.
T Consensus 359 ~i~~R~~~~~~~la~~~~~-~~--~~---~~~~~~-l~~~DiVInatP~g~~~~---~~l~--~~v~D~~Y~P~~T~-ll 425 (477)
T PRK09310 359 LIFNRTKAHAEALASRCQG-KA--FP---LESLPE-LHRIDIIINCLPPSVTIP---KAFP--PCVVDINTLPKHSP-YT 425 (477)
T ss_pred EEEeCCHHHHHHHHHHhcc-ce--ec---hhHhcc-cCCCCEEEEcCCCCCcch---hHHh--hhEEeccCCCCCCH-HH
Confidence 9999999999988876531 11 11 122222 468999999999887522 1222 37999999998886 55
Q ss_pred HHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccC
Q 001559 701 EKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGG 748 (1053)
Q Consensus 701 ~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg 748 (1053)
++|+++|+.+++|.+ ||..|. +.+|++|+|.
T Consensus 426 ~~A~~~G~~~~~G~~-------Ml~~Qa----------~~~f~lw~g~ 456 (477)
T PRK09310 426 QYARSQGSSIIYGYE-------MFAEQA----------LLQFRLWFPT 456 (477)
T ss_pred HHHHHCcCEEECcHH-------HHHHHH----------HHHHHHHcCC
Confidence 899999999999998 576654 4467789986
No 22
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=99.87 E-value=2.4e-22 Score=241.23 Aligned_cols=226 Identities=17% Similarity=0.191 Sum_probs=178.1
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCC-CC-----cCccccccccCCCCcchhhhhhcccccchhccCCcccccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQ-ST-----EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQIS 548 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~-~s-----~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~~~ 548 (1053)
+||+||.+||.+ ++..+.++.|+.|.|.. .. +...+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 263 ~hS~SP~ihn~~---f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~~iGAVNT--- 336 (529)
T PLN02520 263 GHSKSPILHNEA---FKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPIAKSIGAINT--- 336 (529)
T ss_pred ccccCHHHHHHH---HHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHHHHHhCCceE---
Confidence 499999999999 78899999999999953 11 5678999999999999999999999999999999996
Q ss_pred ceee--cceeeeeeecccc------cC----C-----CCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCccccccccccc
Q 001559 549 GINR--ISLRIGKVQETAT------QK----G-----PGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETD 611 (1053)
Q Consensus 549 ~~~~--~~~~~g~~~~~~~------~~----~-----~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~ 611 (1053)
++++ .++++||||+..- +. + ....+.++|+|+|+|++|++++..|++.|
T Consensus 337 vv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G-------------- 402 (529)
T PLN02520 337 IIRRPSDGKLVGYNTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKG-------------- 402 (529)
T ss_pred EEEeCCCCEEEEEcccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCC--------------
Confidence 4443 6789999997611 10 0 11345689999999999999999999987
Q ss_pred ccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHh-hccccEEEecCCccccH-----HHHHHHHHhCCe
Q 001559 612 FEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKC-ISQVEIVISLLPASCHV-----MVANACIEFKKH 685 (1053)
Q Consensus 612 ~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~-i~~~DvVI~~~p~~~~~-----~v~~aci~~g~~ 685 (1053)
.+|.+++|+.++++++++.++. ..+ +. +++.+. ...+|+|||++|.+|.+ ++....++.+..
T Consensus 403 ------~~V~i~nR~~e~a~~la~~l~~-~~~--~~---~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~ 470 (529)
T PLN02520 403 ------ARVVIANRTYERAKELADAVGG-QAL--TL---ADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSL 470 (529)
T ss_pred ------CEEEEEcCCHHHHHHHHHHhCC-cee--eH---hHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCE
Confidence 3799999999999999887642 222 22 223222 24589999999998853 344456777788
Q ss_pred EEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 686 LVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 686 ~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
++|+.|.|.+|..| ++|+++|+.+++|.+ ||..|+ +.+|++|+|..|
T Consensus 471 v~D~vY~P~~T~ll-~~A~~~G~~~~~Gl~-------MLv~Qa----------~~~f~lwtg~~~ 517 (529)
T PLN02520 471 VFDAVYTPKITRLL-REAEESGAIIVSGTE-------MFIRQA----------YEQFERFTGLPA 517 (529)
T ss_pred EEEeccCCCcCHHH-HHHHHCCCeEeCcHH-------HHHHHH----------HHHHHHHhCCCC
Confidence 99999999888666 799999999999988 576664 346778998643
No 23
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.82 E-value=2.3e-19 Score=201.12 Aligned_cols=249 Identities=16% Similarity=0.132 Sum_probs=169.0
Q ss_pred HHHHHHHhcCCCCcceeEEEEcCCCCCCCCChhHhhCCcEEccC----CCcCCEEEeecCCC------------------
Q 001559 28 SHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISED----LSECGLVLGIKQPK------------------ 85 (1053)
Q Consensus 28 ~~v~~L~~~G~~~~~~~~V~VE~~a~~~f~D~~Y~~aGA~i~~~----~~~adiIl~Vk~p~------------------ 85 (1053)
..+++|.++| ++|.| .+|+|++|..+||++.++ ++.||+|+++-+++
T Consensus 16 ~~~~~l~~~G------~~v~~-----~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~ 84 (296)
T PRK08306 16 ELIRKLVELG------AKVSL-----VGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLT 84 (296)
T ss_pred HHHHHHHHCC------CEEEE-----EeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcch
Confidence 4689999999 99999 889999999999999854 34699999996552
Q ss_pred cccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCcc-cchHHHHHHHHHHHHHHHHhhHhhhh
Q 001559 86 LEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGRR-LLAFGKFAGRAGMIDFLHGLGQRYLS 161 (1053)
Q Consensus 86 ~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~~-l~~fg~~AG~ag~~~al~~l~~~~l~ 161 (1053)
.+.+ .+++. ++++.. ++.+-+.+.++|++++++... +.+. +.+...-.| ++..++..+
T Consensus 85 ~~~l~~l~~~~~-v~~G~~------~~~~~~~~~~~gi~~~~~~~~---~~~~~~ns~~~aeg--av~~a~~~~------ 146 (296)
T PRK08306 85 EELLELTPEHCT-IFSGIA------NPYLKELAKETNRKLVELFER---DDVAILNSIPTAEG--AIMMAIEHT------ 146 (296)
T ss_pred HHHHHhcCCCCE-EEEecC------CHHHHHHHHHCCCeEEEEecc---chhhhhccHhHHHH--HHHHHHHhC------
Confidence 1222 45652 223322 233446677999999865544 2222 233333333 222211110
Q ss_pred cCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhh
Q 001559 162 LGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELF 241 (1053)
Q Consensus 162 ~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~ 241 (1053)
+ ..+...+++|+|.|++|+.++..++++|++ |++.+.+...
T Consensus 147 ------------------------------------~--~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r~~~~ 187 (296)
T PRK08306 147 ------------------------------------P--ITIHGSNVLVLGFGRTGMTLARTLKALGAN-VTVGARKSAH 187 (296)
T ss_pred ------------------------------------C--CCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECCHHH
Confidence 0 145678999999999999999999999996 7665533111
Q ss_pred hcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccccCCCCcccCH
Q 001559 242 GKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLST 321 (1053)
Q Consensus 242 ~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~ 321 (1053)
.+ + . ..+|++.. . + ..+ .+.++.+|+||||+ .+.++++
T Consensus 188 ~~---~----~----~~~G~~~~------------~------------~-~~l-~~~l~~aDiVI~t~-----p~~~i~~ 225 (296)
T PRK08306 188 LA---R----I----TEMGLSPF------------H------------L-SEL-AEEVGKIDIIFNTI-----PALVLTK 225 (296)
T ss_pred HH---H----H----HHcCCeee------------c------------H-HHH-HHHhCCCCEEEECC-----ChhhhhH
Confidence 00 0 0 00111000 0 0 011 34566899999996 2457899
Q ss_pred HHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHH-HHHHHHHH
Q 001559 322 QQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF-AKEASQHF 400 (1053)
Q Consensus 322 ~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l-p~~AS~~f 400 (1053)
++++.| + |+++|+|+++++|| ++|. .. ..+||++++.++||+.+ |.+||++|
T Consensus 226 ~~l~~~-~---~g~vIIDla~~pgg-td~~----~a------------------~~~Gv~~~~~~~lpg~vap~ta~~~~ 278 (296)
T PRK08306 226 EVLSKM-P---PEALIIDLASKPGG-TDFE----YA------------------EKRGIKALLAPGLPGKVAPKTAGQIL 278 (296)
T ss_pred HHHHcC-C---CCcEEEEEccCCCC-cCee----eh------------------hhCCeEEEEECCCCccCCHHHHHHHH
Confidence 999986 5 78999999999999 6652 11 24699999999999999 99999999
Q ss_pred HHHHHHHHHHhhc
Q 001559 401 GDILLEFIGSLSS 413 (1053)
Q Consensus 401 s~~l~~~l~~l~~ 413 (1053)
++++.+||..+..
T Consensus 279 ~~~i~~~l~~~~~ 291 (296)
T PRK08306 279 ANVLSQLLAEDLI 291 (296)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
No 24
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=99.68 E-value=5.6e-16 Score=169.90 Aligned_cols=130 Identities=25% Similarity=0.260 Sum_probs=109.4
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC--------CCceEEE
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI--------PNAEAVQ 644 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~--------~~~~~~~ 644 (1053)
...++|+| +|+.|.++++.+.+.... .+.++.|+.|++++++++++.. ++.-++.
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~----------------~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i 68 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVF----------------EGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILI 68 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcc----------------cCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEE
Confidence 45799999 699999999999875421 2579999999999999888653 2234778
Q ss_pred ecCCCHHHHHHhhccccEEEecCC-cccc-HHHHHHHHHhCCeEEEeeccCh----hHHHHHHHHHHcCCeEEecCCCCh
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLP-ASCH-VMVANACIEFKKHLVTASYIDD----SMSKLDEKAKGAGITILGEMGLDP 718 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p-~~~~-~~v~~aci~~g~~~vD~sy~~~----~~~~L~~~Ak~~Gv~~l~g~G~dP 718 (1053)
+|.+|+++|.++.+++.+||||++ +.+| .+|+++|+++|+|++|+|..|. ....+|+.|+++|+.++..||+|.
T Consensus 69 ~D~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDS 148 (423)
T KOG2733|consen 69 ADSANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDS 148 (423)
T ss_pred ecCCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCC
Confidence 999999999999999999999995 5555 8999999999999999996553 334789999999999999999986
Q ss_pred h
Q 001559 719 G 719 (1053)
Q Consensus 719 G 719 (1053)
=
T Consensus 149 I 149 (423)
T KOG2733|consen 149 I 149 (423)
T ss_pred C
Confidence 3
No 25
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=3.6e-14 Score=154.93 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=135.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
.+...++|.| .|++|..+|++|++++ ..-.++.||..+..++...+. ++... ++-+
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~~~g--------------------~~~aLAgRs~~kl~~l~~~LG~~~~~~--p~~~ 61 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLAREG--------------------LTAALAGRSSAKLDALRASLGPEAAVF--PLGV 61 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHHHcC--------------------CchhhccCCHHHHHHHHHhcCcccccc--CCCC
Confidence 4567899999 6999999999999987 245899999999999988875 33333 3334
Q ss_pred HHHHHHhhccccEEEecCCcccc--HHHHHHHHHhCCeEEEeec----cChhHHHHHHHHHHcCCeEEecCCCChhHHHH
Q 001559 650 HKSLCKCISQVEIVISLLPASCH--VMVANACIEFKKHLVTASY----IDDSMSKLDEKAKGAGITILGEMGLDPGIDHM 723 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~--~~v~~aci~~g~~~vD~sy----~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~m 723 (1053)
+..+.+++++++||+||++++.+ .+++++|+.+|+||.|++. +......+|++|+++|+.|+++||||.=.+++
T Consensus 62 p~~~~~~~~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl 141 (382)
T COG3268 62 PAALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCGFDSIPSDL 141 (382)
T ss_pred HHHHHHHHhcceEEEeccccccccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcCccch
Confidence 78899999999999999976653 7899999999999999984 22334456999999999999999999988888
Q ss_pred HHHHHHHHhhhcc-CceEEE----Eeecc-CCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecC
Q 001559 724 MAMKMINHAHVRK-GKIKSF----TSYCG-GLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDG 791 (1053)
Q Consensus 724 la~~~i~~~~~~~-~~v~sf----~~~~G-g~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~ 791 (1053)
-.+++.++....+ +++... .+.+| |+.. -+....++.........++|+.+.+|.
T Consensus 142 ~v~~l~~~~~~d~~~~~~~t~l~l~s~t~~g~S~-------------GTaat~~e~l~~~~~~~~~gr~~~~P~ 202 (382)
T COG3268 142 GVYALLKQALPDGTEELIATHLALGSFTGSGISG-------------GTAATSVEGLATAGKDPEAGRLLRVPY 202 (382)
T ss_pred HHHHHHHhhCcccccchhhhheeeeecccCCccc-------------ccHHHHHHHHHhccCCcccCceeccCc
Confidence 6666666553221 111111 11112 1110 133445555555677789999999986
No 26
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=99.09 E-value=1.4e-12 Score=144.96 Aligned_cols=328 Identities=15% Similarity=0.050 Sum_probs=224.7
Q ss_pred EEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCCCCCCCChhHhhCCcEEccCCC----cCCEEEeecCCC
Q 001559 10 GILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLS----ECGLVLGIKQPK 85 (1053)
Q Consensus 10 Gi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a~~~f~D~~Y~~aGA~i~~~~~----~adiIl~Vk~p~ 85 (1053)
.+++|++ +.|-|++|+|-+++.|+.+| +...+|.+-.+.|-|.+|++.|..+++.-+ +.+++.|+++.+
T Consensus 61 ~L~~~v~-~~D~viSLlP~t~h~lVaK~------~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~ 133 (445)
T KOG0172|consen 61 ALRKEVK-PLDLVISLLPYTFHPLVAKG------CIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMP 133 (445)
T ss_pred HHHhhhc-ccceeeeeccchhhHHHHHH------HHHhhcccccccccCHHHHhhhhhccCCCceEecccccCcchhhhh
Confidence 4567888 99999999999999999999 899999999999999999999999987543 468999999887
Q ss_pred ccccC-CCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCcccchHHHHHHHHHHHHHHHHhhHhhhhcCC
Q 001559 86 LEMIL-PDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGY 164 (1053)
Q Consensus 86 ~~~l~-~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~~l~~fg~~AG~ag~~~al~~l~~~~l~~g~ 164 (1053)
.-+-. .-+.+.+|.|+|+.|....+.......-.-..||||..-..++.|.++|++.+|.++.+.+-. |...+....+
T Consensus 134 a~~ti~~vh~hgg~i~sf~sycGglpape~s~nplgykfsws~~gvl~a~rnsAky~~~Gkiv~v~g~~-~~~~~~~~~~ 212 (445)
T KOG0172|consen 134 AMKTIDLVHEHGGKIKSFKSYCGGLPAPERSNNPLGYKFSWSPLGVLLALRNSAKYYKNGKIVEVDGGD-LADTATHYDF 212 (445)
T ss_pred hhccchHHHhhcceeeehhhhcCCccChhhCCCCcceeeccchhhhhhhccccchhccCCeEEEecccc-HHhhccCccc
Confidence 65544 346678899999999999999999999999999999998888999999999999998766542 2222211111
Q ss_pred CCCcccc-cccc--------ccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCC
Q 001559 165 STPFLSL-GASY--------MYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPS 235 (1053)
Q Consensus 165 ~tpf~~~-~~~~--------~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~ 235 (1053)
-|++.+ +.+. .|+--.++.++++ +++ ...|.+.+|-+-|.+|.++.+.+..++.. .
T Consensus 213 -~pg~al~~yPNrdst~y~evy~I~~ea~tilr--------gtl--ryqgf~~~i~aL~~~G~~~~da~~~~~~~---a- 277 (445)
T KOG0172|consen 213 -YPGPALECYPNRDSTEYSEVYGIPREAKTILR--------GTL--RYQGFVLIIGALVRCGLLACDALEKFSIP---A- 277 (445)
T ss_pred -CccccccccCCcchhhHHHHhcchHHHHHHHh--------ccc--ccccHHHHHHHHHHcCccchhhHhhcCCC---C-
Confidence 233333 2222 2322235666654 222 23455555555699999999988887753 1
Q ss_pred CchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccccCCC
Q 001559 236 RLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRF 315 (1053)
Q Consensus 236 dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~ 315 (1053)
...+|+.+...- .++|+. .++.||-++|.+-..+.
T Consensus 278 --------------------------n~L~W~~~~~~~-~g~~~~------------------i~ed~i~~i~~~~~~~~ 312 (445)
T KOG0172|consen 278 --------------------------NILTWKELLTSL-GGPFSE------------------IEEDDIKVICIYLSGKD 312 (445)
T ss_pred --------------------------CcccHHHHHHhh-cCCCcC------------------ccHHHHHHHHHHhhcCc
Confidence 122333333322 234421 11346777888874455
Q ss_pred CcccCHHHHHHhhcCCCCceEEEEEeecCCC---ceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHH
Q 001559 316 PRLLSTQQLQDLVRKGCPLVGISDITCDIGG---SLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF 392 (1053)
Q Consensus 316 P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG---~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l 392 (1053)
||.++. ++.|--++.+....+|++||.-. .+...-..|+.|.|+....- .++..+-....++++|..+
T Consensus 313 ~~~l~~--~e~Lg~~~~k~v~~~~~~~DTl~~~l~~~l~y~~~e~Dmvvl~h~~-------~~~~p~g~~e~~t~~l~~y 383 (445)
T KOG0172|consen 313 PRILST--LEWLGLFSDKLVTVRGVSLDTLCPHLEEPLYYVDTEFDMVVLQHKF-------GTEPPEGKVESITHTLVLY 383 (445)
T ss_pred cchhhh--hHhcCCCccccccccCCchhccccccccceeccCCccceeEEEecc-------eeeCCCCceEEeeecHhhc
Confidence 544432 22221144577788899999632 23333444555555443210 2234455668999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 001559 393 AKEASQHFGDILLEFIGSLSST 414 (1053)
Q Consensus 393 p~~AS~~fs~~l~~~l~~l~~~ 414 (1053)
|+.++..|+..++++...|+..
T Consensus 384 g~~ng~samaktVg~p~ai~~~ 405 (445)
T KOG0172|consen 384 GRENGESAMAKTVGSPTAIAAK 405 (445)
T ss_pred CCccchhHHHHhcCchHhhhhh
Confidence 9999999999999999988654
No 27
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.07 E-value=4.7e-10 Score=113.68 Aligned_cols=128 Identities=17% Similarity=0.286 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.+.++|+|+|+|.+|+.+++.|.+.+ . ..|.+++|+.++++++++.+.. ..+..+..
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g-~------------------~~v~v~~r~~~~~~~~~~~~~~-~~~~~~~~--- 73 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG-A------------------AKIVIVNRTLEKAKALAERFGE-LGIAIAYL--- 73 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-C------------------CEEEEEcCCHHHHHHHHHHHhh-cccceeec---
Confidence 45689999999999999999998875 1 3799999999999888776542 11112222
Q ss_pred HHHHhhccccEEEecCCcccc----HHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHH
Q 001559 652 SLCKCISQVEIVISLLPASCH----VMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMK 727 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~----~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~ 727 (1053)
+..+.++++|+||+|+|...+ ......+++.++.++|++|.+..+ .+.+++++.|+.+++|.. |+..|
T Consensus 74 ~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-~l~~~~~~~g~~~v~g~~-------~~~~q 145 (155)
T cd01065 74 DLEELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-PLLKEARALGAKTIDGLE-------MLVYQ 145 (155)
T ss_pred chhhccccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-HHHHHHHHCCCceeCCHH-------HHHHH
Confidence 334557899999999998875 233456788999999999987766 888999999999998777 57665
Q ss_pred HHH
Q 001559 728 MIN 730 (1053)
Q Consensus 728 ~i~ 730 (1053)
.+.
T Consensus 146 ~~~ 148 (155)
T cd01065 146 AAE 148 (155)
T ss_pred HHH
Confidence 443
No 28
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=99.00 E-value=1.9e-10 Score=107.91 Aligned_cols=75 Identities=37% Similarity=0.616 Sum_probs=64.7
Q ss_pred ccceeeecccccccccchhhhhHHHHHcCCcEEEEEEEeCCCCcCccccccccCCCCcchhhhhhcccccchhcc
Q 001559 466 KHNLLVSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540 (1053)
Q Consensus 466 ~~~~~~~~~gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~ 540 (1053)
|++++|+|+||+||++++|++||++..+||+|++.+|+|++.....|.+.+.|+.|+.+.|..+|+++..++...
T Consensus 1 ~~s~~VeL~GHLiDSgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~~ 75 (103)
T PF04455_consen 1 MFSREVELEGHLIDSGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAVP 75 (103)
T ss_dssp -EEEEEEEEE--TTSSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CccEEEEEEEeeechhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999998877664
No 29
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.90 E-value=4.1e-09 Score=117.52 Aligned_cols=154 Identities=13% Similarity=0.163 Sum_probs=119.2
Q ss_pred HHHHHcCCcEEEEEE--EeCCCC---------cCccccccccCCCCcchhhh--hhcccccchhccCCccccccceeecc
Q 001559 488 DIIEAAGGSFHLVKC--QVGQST---------EALSFSELEVGADDSAVLDQ--IIDSLTSLANASENNRDQISGINRIS 554 (1053)
Q Consensus 488 dv~~f~~g~v~lvef--~V~~~s---------~~~sl~~lnvt~p~k~~l~~--~ld~~~~~a~~~g~~n~~~~~~~~~~ 554 (1053)
..++..|.+++|..| .+.++. ...++.+++|++|+|+.+.. ++|++ +.++-++++|+. + .+
T Consensus 56 ~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~aKDVdg~n~~----n-~G 129 (283)
T PRK14192 56 NACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SLAKDVDGVTCL----G-FG 129 (283)
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CHHHhcCCCCcc----c-cC
Confidence 348889999999999 677654 44478899999999999999 99999 899999999952 2 44
Q ss_pred e------eeeeeecc-----cccCCCCCCCCCeEEEEcCch-hhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE
Q 001559 555 L------RIGKVQET-----ATQKGPGTKGTSSVLIIGAGR-VCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV 622 (1053)
Q Consensus 555 ~------~~g~~~~~-----~~~~~~~~~~~~~VlIiGaG~-vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v 622 (1053)
+ .+|++|+. ....+. ..++++|+|+|+|+ +|++++..|.+.+ ..|++
T Consensus 130 ~l~~~~~~~~p~T~~gii~~L~~~~i-~l~Gk~vvViG~gg~vGkpia~~L~~~g--------------------atVtv 188 (283)
T PRK14192 130 RMAMGEAAYGSATPAGIMRLLKAYNI-ELAGKHAVVVGRSAILGKPMAMMLLNAN--------------------ATVTI 188 (283)
T ss_pred ccccCCCcccCCcHHHHHHHHHHcCC-CCCCCEEEEECCcHHHHHHHHHHHHhCC--------------------CEEEE
Confidence 4 56777753 111233 56789999999987 9999999998876 38999
Q ss_pred EECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccC
Q 001559 623 ASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID 693 (1053)
Q Consensus 623 ~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~ 693 (1053)
++|.. .+|.+.++++|+|||++|..- .+-...++.|..++|+.|++
T Consensus 189 ~~~~t-----------------------~~L~~~~~~aDIvI~AtG~~~--~v~~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 189 CHSRT-----------------------QNLPELVKQADIIVGAVGKPE--LIKKDWIKQGAVVVDAGFHP 234 (283)
T ss_pred EeCCc-----------------------hhHHHHhccCCEEEEccCCCC--cCCHHHcCCCCEEEEEEEee
Confidence 98721 235556689999999996321 34456689999999999876
No 30
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.85 E-value=2.8e-08 Score=112.02 Aligned_cols=144 Identities=19% Similarity=0.174 Sum_probs=100.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.||.|+|+|.+|+.+++.+.+.+++ --+.|++|+. +++. +..+ .. ...|
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~------------------ELVgV~dr~~~~~~~---~~~~---v~--~~~d--- 53 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDM------------------ELVGVFSRRGAETLD---TETP---VY--AVAD--- 53 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCc------------------EEEEEEcCCcHHHHh---hcCC---cc--ccCC---
Confidence 47999999999999999999877533 1456788884 3322 2222 11 1112
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeecc----ChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHH
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI----DDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKM 728 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~----~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~ 728 (1053)
..+++.++|+|+-|+|...|.+.+..|+++|+|+||.... ++....+++.|++.|-..+.+.|+|||...+.=.
T Consensus 54 ~~e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~-- 131 (324)
T TIGR01921 54 DEKHLDDVDVLILCMGSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRV-- 131 (324)
T ss_pred HHHhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHH--
Confidence 3344578999999999999999999999999999999642 3446678888888777778789999999887622
Q ss_pred HHHhhhccCceEEEEeeccCCC
Q 001559 729 INHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 729 i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
+.+. ...+=..+..|-.|++
T Consensus 132 ~~ea--~lp~g~~yt~wG~g~s 151 (324)
T TIGR01921 132 YGEA--VLPKGQTYTFWGPGLS 151 (324)
T ss_pred HHhc--cCCCCcceeccCCCcC
Confidence 3221 1112245666665554
No 31
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.83 E-value=8.9e-09 Score=102.70 Aligned_cols=98 Identities=19% Similarity=0.335 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..+.++|+|||+|++|++++.+|+..| + .+|+|++|+.++++++++.+++..+...+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g-~------------------~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~--- 66 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALG-A------------------KEITIVNRTPERAEALAEEFGGVNIEAIPL--- 66 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTT-S------------------SEEEEEESSHHHHHHHHHHHTGCSEEEEEG---
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcC-C------------------CEEEEEECCHHHHHHHHHHcCccccceeeH---
Confidence 456899999999999999999999987 3 379999999999999999875433333333
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhC----CeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFK----KHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g----~~~vD~sy 691 (1053)
+++.+.+.++|+||||||.++. .+-...++.. ..++|+++
T Consensus 67 ~~~~~~~~~~DivI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 67 EDLEEALQEADIVINATPSGMP-IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp GGHCHHHHTESEEEE-SSTTST-SSTHHHHTTTCHHCSEEEES-S
T ss_pred HHHHHHHhhCCeEEEecCCCCc-ccCHHHHHHHHhhhhceecccc
Confidence 4566788999999999998876 3333444444 47899986
No 32
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=98.80 E-value=2.2e-09 Score=97.97 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=60.2
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRD 545 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~ 545 (1053)
+||+||.+||.+ ++..+.+..|..|.+.+++ +...+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 7 ~hS~SP~~hn~~---f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAvNt 82 (83)
T PF08501_consen 7 SHSLSPLIHNAA---FEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAVNT 82 (83)
T ss_dssp TT-SHHHHHHHH---HHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-SE
T ss_pred ccccCHHHHHHH---HHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCccc
Confidence 599999999999 8999999999999999877 5588999999999999999999999999999999996
No 33
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.80 E-value=7.3e-08 Score=106.98 Aligned_cols=141 Identities=21% Similarity=0.173 Sum_probs=106.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCC-CCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG-SPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
++||.|||+|.+|+.+++.|.+.+ .+ ..+.|++|+.++++++.+.+. ... ..+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~------------------elv~v~d~~~~~a~~~a~~~~-~~~-------~~~ 54 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINA------------------ELYAFYDRNLEKAENLASKTG-AKA-------CLS 54 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCe------------------EEEEEECCCHHHHHHHHHhcC-Cee-------ECC
Confidence 368999999999999999988653 22 137789999999998877543 221 123
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec----cChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHH
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY----IDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKM 728 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy----~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~ 728 (1053)
+.+++.++|+|+.|+|...+..+...++++|+|++.++. ..+...+|.+.|++.|+.++...|.-.|++.+-+.
T Consensus 55 ~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i~a~-- 132 (265)
T PRK13304 55 IDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGIKAA-- 132 (265)
T ss_pred HHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHHHHH--
Confidence 455667899999999999999999999999999999874 23445688899999999998888876777655322
Q ss_pred HHHhhhccCceEEEEeeccC
Q 001559 729 INHAHVRKGKIKSFTSYCGG 748 (1053)
Q Consensus 729 i~~~~~~~~~v~sf~~~~Gg 748 (1053)
..+++.++.+++..
T Consensus 133 ------~~G~i~~V~~~~~k 146 (265)
T PRK13304 133 ------SLGEIKSVTLTTRK 146 (265)
T ss_pred ------hcCCccEEEEEEec
Confidence 23567777766543
No 34
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.73 E-value=1.4e-07 Score=105.09 Aligned_cols=140 Identities=21% Similarity=0.189 Sum_probs=103.6
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhC-CCCCcccccccccccccCCCccE-EEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASF-GSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+++||.|||+|.+|+.+++.|.+. ++ .+ +.|++|++++++++++.++.... .
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~-------------------~el~aV~dr~~~~a~~~a~~~g~~~~-------~ 58 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPG-------------------LTLSAVAVRDPQRHADFIWGLRRPPP-------V 58 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCC-------------------eEEEEEECCCHHHHHHHHHhcCCCcc-------c
Confidence 357999999999999999999863 32 34 45899999999988877642111 1
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccC-hhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHH
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID-DSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMI 729 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~-~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i 729 (1053)
.++.++++++|+|+.|+|...|..+...++++|+|++..+... .+..+|.+.|++.|+.+....|+--|+|.+-
T Consensus 59 ~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~d~l~----- 133 (271)
T PRK13302 59 VPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGLDAVT----- 133 (271)
T ss_pred CCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhHHHHH-----
Confidence 2345566789999999999999999999999999999876432 2467888999999999988877655554322
Q ss_pred HHhhhccCceEEEEeec
Q 001559 730 NHAHVRKGKIKSFTSYC 746 (1053)
Q Consensus 730 ~~~~~~~~~v~sf~~~~ 746 (1053)
.. ..+++..+.+.+
T Consensus 134 -~g--~iG~~~~v~~~t 147 (271)
T PRK13302 134 -AA--AEGTIHSVKMIT 147 (271)
T ss_pred -HH--HcCCceEEEEEE
Confidence 11 224566666544
No 35
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.61 E-value=1.3e-06 Score=98.12 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=95.3
Q ss_pred CCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCcccc
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKA 281 (1053)
Q Consensus 202 ~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~ 281 (1053)
++.-.+++|+|.|.+|+..+..++.+|++ |...+-..... ..... . ++.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~-V~v~~R~~~~~------------------------~~~~~-~---g~~-- 196 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGAR-VFVGARSSADL------------------------ARITE-M---GLI-- 196 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCE-EEEEeCCHHHH------------------------HHHHH-C---CCe--
Confidence 34457899999999999999999999996 55544211000 00000 0 010
Q ss_pred ccccCccCcCcchhhhccCCCcEEEEcccccCCCCcccCHHHHHHhhcCCCCceEEEEEeecCCCc-eeeecccccccCC
Q 001559 282 DYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGS-LEFVNRTTSIDSS 360 (1053)
Q Consensus 282 ~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~-iE~t~~~tti~~P 360 (1053)
+-.+. .+ .+.++.+|+||||+-.+ ++++++++.| + ++.+|+|+++++||. ++..
T Consensus 197 -----~~~~~-~l-~~~l~~aDiVint~P~~-----ii~~~~l~~~-k---~~aliIDlas~Pg~tdf~~A--------- 251 (287)
T TIGR02853 197 -----PFPLN-KL-EEKVAEIDIVINTIPAL-----VLTADVLSKL-P---KHAVIIDLASKPGGTDFEYA--------- 251 (287)
T ss_pred -----eecHH-HH-HHHhccCCEEEECCChH-----HhCHHHHhcC-C---CCeEEEEeCcCCCCCCHHHH---------
Confidence 00011 11 34567899999997332 6788888886 5 689999999999883 3221
Q ss_pred eEEeCCCCCCcCCCCCCCCeEEEecCChhhHH-HHHHHHHHHHHHHHHHH
Q 001559 361 FFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF-AKEASQHFGDILLEFIG 409 (1053)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l-p~~AS~~fs~~l~~~l~ 409 (1053)
...|+.++..++||..+ |.+|.+.+++.+..+|.
T Consensus 252 ---------------k~~G~~a~~~~glPg~~ap~ta~~i~~~~~~~~~~ 286 (287)
T TIGR02853 252 ---------------KKRGIKALLAPGLPGIVAPKTAGKILANVLSELLL 286 (287)
T ss_pred ---------------HHCCCEEEEeCCCCcccCchhHHHHHHHHHHHHhh
Confidence 23599999999999999 99999999999988774
No 36
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.57 E-value=2.1e-07 Score=102.84 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=97.0
Q ss_pred CCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
++||+|+|+ |++|+.+++.+.+.+++ .-+.+++++.+++... .. .++...++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~------------------elvav~d~~~~~~~~~-~~--------~~i~~~~d 53 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL------------------ELVAAVDRPGSPLVGQ-GA--------LGVAITDD 53 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC------------------EEEEEEecCCcccccc-CC--------CCccccCC
Confidence 368999998 99999999998776533 2466788887665443 11 12222355
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHH
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMIN 730 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~ 730 (1053)
+.++++++|+||+++|+..+.+++..|+++|+|++..+ +...+...|.+.++..++.+...+.+.+++...++.++..
T Consensus 54 l~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~aa~ 133 (257)
T PRK00048 54 LEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEKAAK 133 (257)
T ss_pred HHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHHHHHH
Confidence 67777789999999999988999999999999998653 3456677787766677777777777777777777776664
Q ss_pred Hh
Q 001559 731 HA 732 (1053)
Q Consensus 731 ~~ 732 (1053)
.+
T Consensus 134 ~l 135 (257)
T PRK00048 134 YL 135 (257)
T ss_pred hc
Confidence 44
No 37
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.54 E-value=7.1e-07 Score=100.18 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=87.8
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+...++|+|+|+|++|+.+++.|...| .+|++++|+.+++++..+. ....+ +.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G--------------------~~V~v~~R~~~~~~~~~~~--g~~~~-----~~ 200 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALG--------------------ARVFVGARSSADLARITEM--GLIPF-----PL 200 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHC--CCeee-----cH
Confidence 345689999999999999999999887 3899999998876655432 12221 34
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCC
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMG 715 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G 715 (1053)
+++.+.++++|+||+++|..+...-....++.+..++|++|.+..+.. +.|++.|+..+..-|
T Consensus 201 ~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~~~~g 263 (287)
T TIGR02853 201 NKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKALLAPG 263 (287)
T ss_pred HHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEEEeCC
Confidence 567888999999999999865322233456778899999998877644 699999999885333
No 38
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.51 E-value=5.7e-07 Score=95.10 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=83.8
Q ss_pred CCCCCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEec
Q 001559 571 TKGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLD 646 (1053)
Q Consensus 571 ~~~~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d 646 (1053)
..+.++++|+|+ |++|+.+++.|++.+ .+|.+++|+.++++++.+.+. +.+...+|
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g--------------------~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~ 84 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG--------------------ARVVLVGRDLERAQKAADSLRARFGEGVGAVE 84 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHHHhhcCCcEEEee
Confidence 456789999995 999999999999876 389999999999988877553 34566678
Q ss_pred CCCHHHHHHhhccccEEEecCCccccH-HHHHHHHHhCCeEEEeeccChhHH
Q 001559 647 VSDHKSLCKCISQVEIVISLLPASCHV-MVANACIEFKKHLVTASYIDDSMS 697 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~~~~-~v~~aci~~g~~~vD~sy~~~~~~ 697 (1053)
..+.+++.+.++++|+||+++|.++.. .....+.+.++.++|++|.++...
T Consensus 85 ~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~ 136 (194)
T cd01078 85 TSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGI 136 (194)
T ss_pred CCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCc
Confidence 888888889999999999999988752 222334445778999999775443
No 39
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.48 E-value=1.7e-06 Score=83.71 Aligned_cols=113 Identities=27% Similarity=0.298 Sum_probs=90.0
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc-EEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI-RVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
.||+|||+|.+|+.....+.+..+ +. -+.|+++++++++++.+.+. +... .++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~------------------~~~v~~v~d~~~~~~~~~~~~~~-~~~~-------~~~ 54 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP------------------DFEVVAVCDPDPERAEAFAEKYG-IPVY-------TDL 54 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT------------------TEEEEEEECSSHHHHHHHHHHTT-SEEE-------SSH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC------------------CcEEEEEEeCCHHHHHHHHHHhc-ccch-------hHH
Confidence 379999999999999988887731 12 35789999999999887764 3321 234
Q ss_pred HHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEee---ccChhHHHHHHHHHHcCCeEEec
Q 001559 654 CKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 654 ~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
.++++ +.|+|+-++|...|..++..|+++|+|++.-. ...++..+|.+.|+++|+.++.+
T Consensus 55 ~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 55 EELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp HHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 55665 79999999999999999999999999987764 34567788999999999987653
No 40
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.46 E-value=2.1e-06 Score=98.12 Aligned_cols=146 Identities=23% Similarity=0.288 Sum_probs=108.5
Q ss_pred CCCeEEEEcCchhh-HHHHHHHHhCCC-CCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVC-RPAAELLASFGS-PSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg-~~ia~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
++.||.|||+|+++ ...+..+...+. + .-+.+++++.++++++++.++- . ...
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~------------------~~vav~d~~~~~a~~~a~~~~~-~------~~~ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGL------------------ELVAVVDRDPERAEAFAEEFGI-A------KAY 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCce------------------EEEEEecCCHHHHHHHHHHcCC-C------ccc
Confidence 46799999998555 567778877652 1 3688899999999999998762 2 112
Q ss_pred HHHHHhhcc--ccEEEecCCccccHHHHHHHHHhCCeEEEee---ccChhHHHHHHHHHHcCCeEEecC--CCChhHHHH
Q 001559 651 KSLCKCISQ--VEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGEM--GLDPGIDHM 723 (1053)
Q Consensus 651 ~~l~~~i~~--~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~~l~g~--G~dPGi~~m 723 (1053)
.++.+++++ .|+|+.++|..+|.+++.+|+++|+|++.-- ....+..+|.+.|+++|+.+..+. .++|.+-.
T Consensus 57 ~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~- 135 (342)
T COG0673 57 TDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQA- 135 (342)
T ss_pred CCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHH-
Confidence 446666764 7999999999999999999999999998865 345677889999999999888764 57776543
Q ss_pred HHHHHHHHhhhccCceEEEEeecc
Q 001559 724 MAMKMINHAHVRKGKIKSFTSYCG 747 (1053)
Q Consensus 724 la~~~i~~~~~~~~~v~sf~~~~G 747 (1053)
++.++++. ..+++.++.....
T Consensus 136 -~k~li~~g--~lG~v~~~~~~~~ 156 (342)
T COG0673 136 -LKELIDSG--ALGEVVSVQASFS 156 (342)
T ss_pred -HHHHHhcC--CcCceEEEEEEee
Confidence 33445432 3467777765443
No 41
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.42 E-value=1.1e-06 Score=90.51 Aligned_cols=110 Identities=25% Similarity=0.244 Sum_probs=80.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|++|.+||.|.+|+++++.|++.+ .+|.++||++++++++.+.- +.. + +++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g--------------------~~v~~~d~~~~~~~~~~~~g--~~~--~-----~s~ 51 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG--------------------YEVTVYDRSPEKAEALAEAG--AEV--A-----DSP 51 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT--------------------TEEEEEESSHHHHHHHHHTT--EEE--E-----SSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC--------------------CeEEeeccchhhhhhhHHhh--hhh--h-----hhh
Confidence 578999999999999999999887 38999999999999988762 222 2 456
Q ss_pred HHhhccccEEEecCCcccc-HHHH-----HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 654 CKCISQVEIVISLLPASCH-VMVA-----NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~-~~v~-----~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
.++++++|+|+.|+|..-. ..+. ...++.|+.++|++..++ ..+++.+.++++|+.++.
T Consensus 52 ~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 52 AEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVD 117 (163)
T ss_dssp HHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred hhHhhcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeee
Confidence 7788889999999997543 2332 233567899999997655 456788889999988776
No 42
>PRK11579 putative oxidoreductase; Provisional
Probab=98.37 E-value=6.8e-06 Score=94.78 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCeEEEEcCchhhH-HHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCR-PAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~-~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.||.|||+|.+|+ ..+..+...+++ .-+.|++++.+++. +.++.... ..+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~------------------~l~av~d~~~~~~~---~~~~~~~~-------~~~ 55 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGL------------------ELAAVSSSDATKVK---ADWPTVTV-------VSE 55 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCC------------------EEEEEECCCHHHHH---hhCCCCce-------eCC
Confidence 46999999999997 467777665422 13568999987654 34443222 134
Q ss_pred HHHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChhHHHHHHHHHHcCCeEEec--CCCChhHHHHHH
Q 001559 653 LCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDSMSKLDEKAKGAGITILGE--MGLDPGIDHMMA 725 (1053)
Q Consensus 653 l~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~~~~L~~~Ak~~Gv~~l~g--~G~dPGi~~mla 725 (1053)
++++++ +.|+|+.|+|..+|.+++..|+++|+|++.-.- ...+..+|.+.|+++|+.+..+ ..++|.+-.+
T Consensus 56 ~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~-- 133 (346)
T PRK11579 56 PQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTL-- 133 (346)
T ss_pred HHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHH--
Confidence 556665 589999999999999999999999999987543 3467788989999999988765 4678876544
Q ss_pred HHHHHHhhhccCceEEEEeecc
Q 001559 726 MKMINHAHVRKGKIKSFTSYCG 747 (1053)
Q Consensus 726 ~~~i~~~~~~~~~v~sf~~~~G 747 (1053)
++++++. ..|++..+..+++
T Consensus 134 k~~i~~g--~iG~i~~~~~~~~ 153 (346)
T PRK11579 134 KALLAEG--VLGEVAYFESHFD 153 (346)
T ss_pred HHHHhcC--CCCCeEEEEEEec
Confidence 3445432 3467777766543
No 43
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.36 E-value=3.6e-06 Score=95.05 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|||+|.+|+.++..|...| .+|++++|+.++.+.. +.++ ++.+ +.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~G--------------------a~V~v~~r~~~~~~~~-~~~G-~~~~-----~~~ 202 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALG--------------------ANVTVGARKSAHLARI-TEMG-LSPF-----HLS 202 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHH-HHcC-Ceee-----cHH
Confidence 44689999999999999999999887 3899999998765543 3332 3322 235
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCC
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMG 715 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G 715 (1053)
++.+.++++|+|||++|..+-..-....++.+..++|++|.+..+ .+ +.|++.|++++.--|
T Consensus 203 ~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggt-d~-~~a~~~Gv~~~~~~~ 264 (296)
T PRK08306 203 ELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGT-DF-EYAEKRGIKALLAPG 264 (296)
T ss_pred HHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCc-Ce-eehhhCCeEEEEECC
Confidence 678889999999999997543222334567889999999987665 34 688999999984333
No 44
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.27 E-value=5.2e-06 Score=92.30 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=87.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~ 652 (1053)
++||.|+|+|.+|+.+++.|.+.+.. .-+.++.+... .++..+.+. .+.+ ..|.+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~------------------~l~~v~~~~~~-~~~~~~~~~~~~~~----~~d~~~ 57 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDL------------------RVDWVIVPEHS-IDAVRRALGEAVRV----VSSVDA 57 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCc------------------eEEEEEEcCCC-HHHHhhhhccCCee----eCCHHH
Confidence 46899999999999999999876532 12334444321 122222221 1111 123343
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChh-HHHHHHHHHHcCCeEEecCCCChhHHHHH
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDS-MSKLDEKAKGAGITILGEMGLDPGIDHMM 724 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~-~~~L~~~Ak~~Gv~~l~g~G~dPGi~~ml 724 (1053)
+ -.+.|+||.|+|...|.+.+..|+++|+|++..+- ..++ ...|.+.|++.|+.++...|...|++-+-
T Consensus 58 l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~ 130 (265)
T PRK13303 58 L---PQRPDLVVECAGHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA 130 (265)
T ss_pred h---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence 3 35699999999999899999999999999998864 2343 35688899999999999888888877664
No 45
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.27 E-value=3.9e-06 Score=93.29 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=90.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HH----HHHHHhcCCCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KD----AEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~----a~~l~~~~~~~~~~~~d~~ 648 (1053)
+||+|+| +|++|+.+++.+.+.+++ .-+.+++|.. .. +.++....+ ..+.. ..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~------------------elvav~d~~~~~~~~~~~~~~~~~~~-~gv~~--~~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGL------------------QLVAAFERHGSSLQGTDAGELAGIGK-VGVPV--TD 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCC------------------EEEEEEecCCccccCCCHHHhcCcCc-CCcee--eC
Confidence 6899999 699999999999876533 1456677532 22 112211111 11110 12
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecCCCChhHHHHH
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMM 724 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~ml 724 (1053)
|.+ ++...+|+||+++|+..+...+..|+++|+|+|..+ +...+..+|.+.|+++|+.++.+..|+.|+.-|+
T Consensus 61 d~~---~l~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~ 135 (266)
T TIGR00036 61 DLE---AVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMF 135 (266)
T ss_pred CHH---HhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHH
Confidence 333 333569999999999999999999999999999754 5556778898899999999999999999987554
No 46
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=98.23 E-value=5.8e-06 Score=91.99 Aligned_cols=110 Identities=22% Similarity=0.276 Sum_probs=84.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.+||.|.+|.++|..|.+.| ..|+|+||+++++.+.+.... +.. ..+..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG--------------------~~v~v~~r~~~ka~~~~~~~G-a~~-------a~s~~ 52 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG--------------------HEVTVYNRTPEKAAELLAAAG-ATV-------AASPA 52 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC--------------------CEEEEEeCChhhhhHHHHHcC-Ccc-------cCCHH
Confidence 47999999999999999999998 389999999999655554433 111 13446
Q ss_pred HhhccccEEEecCCccccHH-HH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 655 KCISQVEIVISLLPASCHVM-VA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~-v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
++++++|+||.|+|..-+.. +. ...++.|+.+||+|.++| ..+++.+.+++.|+.++.
T Consensus 53 eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD 118 (286)
T COG2084 53 EAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLD 118 (286)
T ss_pred HHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 78889999999999875522 22 122457999999998765 457899999999998886
No 47
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.17 E-value=6.9e-06 Score=89.18 Aligned_cols=121 Identities=15% Similarity=0.091 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC----HHHH-------HHHHhcCCC
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----LKDA-------EEVIEGIPN 639 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----~~~a-------~~l~~~~~~ 639 (1053)
..+.++|+|+|+|.+|+.+++.|.+.| + ...++.++||+ .+++ +++++.+..
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G-~----------------~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~ 84 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAG-A----------------KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP 84 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcC-c----------------CcceEEEEeCCCccccccchhhhHHHHHHHHHhcc
Confidence 356789999999999999999999887 2 01269999998 4554 344444321
Q ss_pred ceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCe-EEecCCCC
Q 001559 640 AEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGIT-ILGEMGLD 717 (1053)
Q Consensus 640 ~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~-~l~g~G~d 717 (1053)
. +. + .++.+.++++|+||+++|.++..+.....+..+..++|++ +|..+ .+.+.|++.|+. +..|.++-
T Consensus 85 -~----~~-~-~~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e-~~~~~A~~~ga~i~a~G~~~~ 154 (226)
T cd05311 85 -E----KT-G-GTLKEALKGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPE-IWPEEAKEAGADIVATGRSDF 154 (226)
T ss_pred -C----cc-c-CCHHHHHhcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCc-CCHHHHHHcCCcEEEeCCCCC
Confidence 1 11 1 2465677889999999987665332223333555667776 65443 466899999995 77887653
No 48
>PRK10206 putative oxidoreductase; Provisional
Probab=98.15 E-value=1.9e-05 Score=91.11 Aligned_cols=143 Identities=18% Similarity=0.120 Sum_probs=98.4
Q ss_pred CeEEEEcCchhhH-HHHHHHHhC-CCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 575 SSVLIIGAGRVCR-PAAELLASF-GSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiGaG~vg~-~ia~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.||.|||+|.++. ..+..+... ..+ .-+.|+|++.+++ +.++.++.+.+ ..+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~------------------~l~av~d~~~~~~-~~~~~~~~~~~-------~~~ 55 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSW------------------HVAHIFRRHAKPE-EQAPIYSHIHF-------TSD 55 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCE------------------EEEEEEcCChhHH-HHHHhcCCCcc-------cCC
Confidence 5899999998764 345555333 212 1356899987654 55665543321 134
Q ss_pred HHHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChhHHHHHHHHHHcCCeEEecC--CCChhHHHHHH
Q 001559 653 LCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDSMSKLDEKAKGAGITILGEM--GLDPGIDHMMA 725 (1053)
Q Consensus 653 l~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~~~~L~~~Ak~~Gv~~l~g~--G~dPGi~~mla 725 (1053)
+.++++ +.|+|+.|+|...|.+++..|+++|+|++.-.- ...+..+|.+.|+++|+.+..+. -++|..- .+
T Consensus 56 ~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~--~~ 133 (344)
T PRK10206 56 LDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFL--TA 133 (344)
T ss_pred HHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHH--HH
Confidence 566664 689999999999999999999999999987643 34677889899999999987654 5777543 33
Q ss_pred HHHHHHhhhccCceEEEEeecc
Q 001559 726 MKMINHAHVRKGKIKSFTSYCG 747 (1053)
Q Consensus 726 ~~~i~~~~~~~~~v~sf~~~~G 747 (1053)
++++++. ..|++.++...++
T Consensus 134 k~li~~g--~iG~i~~i~~~~~ 153 (344)
T PRK10206 134 KKAIESG--KLGEIVEVESHFD 153 (344)
T ss_pred HHHHHcC--CCCCeEEEEEEec
Confidence 4455432 3467777776543
No 49
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.13 E-value=1.8e-05 Score=73.72 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=69.3
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
||.|||+|.+|.++++.|.+.+. ...+|.++ +|++++++++.+.++ +.+.. .+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-----------------~~~~v~~~~~r~~~~~~~~~~~~~-~~~~~------~~~~ 56 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-----------------KPHEVIIVSSRSPEKAAELAKEYG-VQATA------DDNE 56 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS------------------GGEEEEEEESSHHHHHHHHHHCT-TEEES------EEHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----------------CceeEEeeccCcHHHHHHHHHhhc-ccccc------CChH
Confidence 68999999999999999998861 12478855 999999999998876 23221 1345
Q ss_pred HhhccccEEEecCCccccHHHHHHH--HHhCCeEEEee
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC--IEFKKHLVTAS 690 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac--i~~g~~~vD~s 690 (1053)
++++++|+||.|+|+.....+.... ...++.+||++
T Consensus 57 ~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 57 EAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred HhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 6777999999999998877776554 67889999875
No 50
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.11 E-value=9.7e-06 Score=92.81 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=79.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCCC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d 649 (1053)
..++++|||+|.+|+..+..++....+ .+|.|++|++++++++++.+. ++++..+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~------------------~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~---- 183 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDI------------------ERVRVYSRTFEKAYAFAQEIQSKFNTEIYVV---- 183 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCc------------------cEEEEECCCHHHHHHHHHHHHHhcCCcEEEe----
Confidence 467899999999999999887654323 389999999999999887542 2332222
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHH
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEK 702 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~ 702 (1053)
+++.++++++|+||+|||.. ++.+. .++++|+|+.-+....+.+.++...
T Consensus 184 -~~~~~~~~~aDiVi~aT~s~-~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 184 -NSADEAIEEADIIVTVTNAK-TPVFS-EKLKKGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred -CCHHHHHhcCCEEEEccCCC-CcchH-HhcCCCcEEEecCCCCcccccCCHH
Confidence 33567778999999999976 67777 9999999998886555555555443
No 51
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.05 E-value=5.4e-05 Score=80.08 Aligned_cols=138 Identities=21% Similarity=0.232 Sum_probs=103.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|+|+|.+|..+++.+.+.. . +++ .+.|.||+.+++.++.+.++... ..++.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~-----------~~e-----~v~v~D~~~ek~~~~~~~~~~~~--------~s~id 55 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-V-----------DFE-----LVAVYDRDEEKAKELEASVGRRC--------VSDID 55 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-c-----------cee-----EEEEecCCHHHHHHHHhhcCCCc--------cccHH
Confidence 46999999999999999886542 1 122 68999999999999988876421 13456
Q ss_pred HhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChhH-HHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHH
Q 001559 655 KCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDSM-SKLDEKAKGAGITILGEMGLDPGIDHMMAMKMIN 730 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~~-~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~ 730 (1053)
+++++.|+||.|+....-......++++|++++-+|. ..+.. ..+.+.||..|..+..-.|---|+|-+.+.+
T Consensus 56 e~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l~aar--- 132 (255)
T COG1712 56 ELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDALAAAR--- 132 (255)
T ss_pred HHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHHHHHHhh---
Confidence 7778999999999887666777888999999998884 23333 3466789999999888778777888776543
Q ss_pred HhhhccCceEEEEee
Q 001559 731 HAHVRKGKIKSFTSY 745 (1053)
Q Consensus 731 ~~~~~~~~v~sf~~~ 745 (1053)
-+.++++.+-
T Consensus 133 -----~g~i~~V~lt 142 (255)
T COG1712 133 -----VGGIEEVVLT 142 (255)
T ss_pred -----cCCeeEEEEE
Confidence 1457776653
No 52
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.03 E-value=2.2e-05 Score=91.24 Aligned_cols=96 Identities=27% Similarity=0.368 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.+.++|+|||+|-||..+|.+|.+.| + ..|+|++|+.++|++++..+. .+++ ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g-~------------------~~i~IaNRT~erA~~La~~~~-~~~~-----~l 229 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKG-V------------------KKITIANRTLERAEELAKKLG-AEAV-----AL 229 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCC-C------------------CEEEEEcCCHHHHHHHHHHhC-Ceee-----cH
Confidence 356799999999999999999999988 3 389999999999999999986 3433 34
Q ss_pred HHHHHhhccccEEEecCCccc---cHHHHHHHHHhCC--eEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASC---HVMVANACIEFKK--HLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~~g~--~~vD~sy 691 (1053)
+++.+.+.++|+||++|.... .......+++..+ .+||++-
T Consensus 230 ~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 230 EELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred HHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecC
Confidence 778899999999999986432 2344455555444 4789874
No 53
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=98.02 E-value=3.2e-05 Score=80.17 Aligned_cols=71 Identities=27% Similarity=0.285 Sum_probs=63.9
Q ss_pred EEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHH
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCK 655 (1053)
Q Consensus 577 VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~ 655 (1053)
|+|+| .|.+|+.+++.|.+.+ .+|++..|++++++. .++++.+.+|+.|.+.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--------------------~~V~~~~R~~~~~~~----~~~~~~~~~d~~d~~~~~~ 56 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--------------------HEVTALVRSPSKAED----SPGVEIIQGDLFDPDSVKA 56 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--------------------SEEEEEESSGGGHHH----CTTEEEEESCTTCHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC--------------------CEEEEEecCchhccc----ccccccceeeehhhhhhhh
Confidence 78999 5999999999999987 389999999998877 5679999999999999999
Q ss_pred hhccccEEEecCCccc
Q 001559 656 CISQVEIVISLLPASC 671 (1053)
Q Consensus 656 ~i~~~DvVI~~~p~~~ 671 (1053)
.++++|+||++++...
T Consensus 57 al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 57 ALKGADAVIHAAGPPP 72 (183)
T ss_dssp HHTTSSEEEECCHSTT
T ss_pred hhhhcchhhhhhhhhc
Confidence 9999999999997543
No 54
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.99 E-value=5.9e-05 Score=86.63 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=89.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCC-CCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG-SPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
..||+|+|+ ++|+..++.+.+.+ .+ .-+.|+|++.++++++++.++ +.. . .+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~------------------eLvaV~d~~~erA~~~A~~~g-i~~----y---~~ 55 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERF------------------ELAGILAQGSERSRALAHRLG-VPL----Y---CE 55 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCc------------------EEEEEEcCCHHHHHHHHHHhC-CCc----c---CC
Confidence 578999999 56998888887754 23 248899999999999999875 321 1 33
Q ss_pred HHHhhccccEEEec----CCccccHHHHHHHHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 653 LCKCISQVEIVISL----LPASCHVMVANACIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 653 l~~~i~~~DvVI~~----~p~~~~~~v~~aci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
+++++.+.|+++-+ +|.+.|.+++.+|+++|+|++.---. ..+..+|.+.|+++|+.++.. -+.|.+.
T Consensus 56 ~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~-~f~p~~~ 128 (343)
T TIGR01761 56 VEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVN-TFYPHLP 128 (343)
T ss_pred HHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEE-ecCHHHH
Confidence 45556655544444 35679999999999999999887533 367788999999999998864 3777654
No 55
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.97 E-value=2.4e-05 Score=92.18 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|||+|++|+.++.+|+..| + ..++|++|+.++++++++.++...++ ..+
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g-~------------------~~I~V~nRt~~ra~~La~~~~~~~~~-----~~~ 234 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALA-P------------------KQIMLANRTIEKAQKITSAFRNASAH-----YLS 234 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcC-C------------------CEEEEECCCHHHHHHHHHHhcCCeEe-----cHH
Confidence 45688999999999999999999887 2 37999999999999999987533332 346
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHH-hCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIE-FKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~-~g~~~vD~sy 691 (1053)
++.+.+.++|+|||||+.... -+-..-++ ....++|++-
T Consensus 235 ~l~~~l~~aDiVI~aT~a~~~-vi~~~~~~~~~~~~iDLav 274 (414)
T PRK13940 235 ELPQLIKKADIIIAAVNVLEY-IVTCKYVGDKPRVFIDISI 274 (414)
T ss_pred HHHHHhccCCEEEECcCCCCe-eECHHHhCCCCeEEEEeCC
Confidence 778889999999999975421 11111112 2346789974
No 56
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.96 E-value=2.2e-05 Score=89.43 Aligned_cols=117 Identities=20% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d 649 (1053)
...++|+|||+|.+|+.+++.+...... .+|.|++|++++++++++.+.. ..+..
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~------------------~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----- 179 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPI------------------KQVRVWGRDPAKAEALAAELRAQGFDAEV----- 179 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCC------------------CEEEEEcCCHHHHHHHHHHHHhcCCceEE-----
Confidence 4468899999999999999877653212 3899999999999999987642 12222
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEe
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
.+++.+.++++|+||+|||.. .+.+-...++.|+|+.-+....+.++++.....+++..++.
T Consensus 180 ~~~~~~av~~aDIVi~aT~s~-~pvl~~~~l~~g~~i~~ig~~~~~~~El~~~~~~~a~~~vD 241 (314)
T PRK06141 180 VTDLEAAVRQADIISCATLST-EPLVRGEWLKPGTHLDLVGNFTPDMRECDDEAIRRASVYVD 241 (314)
T ss_pred eCCHHHHHhcCCEEEEeeCCC-CCEecHHHcCCCCEEEeeCCCCcccccCCHHHHhcCcEEEc
Confidence 134566788999999999865 33333467889996443434456777887777777766555
No 57
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.96 E-value=1.6e-05 Score=91.22 Aligned_cols=136 Identities=12% Similarity=0.101 Sum_probs=90.5
Q ss_pred cCCccccccceeecceeeeeeecc----cccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCC
Q 001559 540 SENNRDQISGINRISLRIGKVQET----ATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQ 615 (1053)
Q Consensus 540 ~g~~n~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~ 615 (1053)
.|++|+ .+...+.+.|++|+. .... ......++++|||+|++|+..+..|....++
T Consensus 98 tG~~~a---i~~d~~~lt~~rT~a~~~~a~~~-la~~~~~~v~IiGaG~~a~~~~~al~~~~~~---------------- 157 (330)
T PRK08291 98 TGLVEA---LLLDNGYLTDVRTAAAGAVAARH-LAREDASRAAVIGAGEQARLQLEALTLVRPI---------------- 157 (330)
T ss_pred CCceEE---EEcCCchHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCHHHHHHHHHHHhcCCC----------------
Confidence 566664 223445677777744 1111 1123457899999999999999998753322
Q ss_pred CccEEEEEECCHHHHHHHHhcCC---CceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeecc
Q 001559 616 NDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 616 ~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~ 692 (1053)
.+|.|++|+.++++++++.+. ++++... +++.+++.++|+||++||... +.+-...++.|+|+..+...
T Consensus 158 --~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~-----~d~~~al~~aDiVi~aT~s~~-p~i~~~~l~~g~~v~~vg~d 229 (330)
T PRK08291 158 --REVRVWARDAAKAEAYAADLRAELGIPVTVA-----RDVHEAVAGADIIVTTTPSEE-PILKAEWLHPGLHVTAMGSD 229 (330)
T ss_pred --CEEEEEcCCHHHHHHHHHHHhhccCceEEEe-----CCHHHHHccCCEEEEeeCCCC-cEecHHHcCCCceEEeeCCC
Confidence 379999999999999988653 2332211 346677889999999998642 22333458899999887655
Q ss_pred ChhHHHHHHHH
Q 001559 693 DDSMSKLDEKA 703 (1053)
Q Consensus 693 ~~~~~~L~~~A 703 (1053)
.+.+++++...
T Consensus 230 ~~~~rEld~~~ 240 (330)
T PRK08291 230 AEHKNEIAPAV 240 (330)
T ss_pred CCCcccCCHHH
Confidence 55666665443
No 58
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.95 E-value=5.6e-05 Score=90.20 Aligned_cols=191 Identities=21% Similarity=0.223 Sum_probs=122.5
Q ss_pred HHcCCcEEEEEEEeCCCC--cCccccccccC-CCCcchhhhhhcccccchhccCCccccccceeecc--eeeeeeecc--
Q 001559 491 EAAGGSFHLVKCQVGQST--EALSFSELEVG-ADDSAVLDQIIDSLTSLANASENNRDQISGINRIS--LRIGKVQET-- 563 (1053)
Q Consensus 491 ~f~~g~v~lvef~V~~~s--~~~sl~~lnvt-~p~k~~l~~~ld~~~~~a~~~g~~n~~~~~~~~~~--~~~g~~~~~-- 563 (1053)
.+.+++..+.++.|++++ .++++.+++.. .|+...++.+ .+......|.++.. +.... ...|....+
T Consensus 146 ~~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i-~r~~~~~~p~~~~~-----l~~gD~l~v~g~~~~l~~ 219 (453)
T PRK09496 146 EFADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAI-FRGGRLIIPRGDTV-----IEAGDEVYFIGAREHIRA 219 (453)
T ss_pred eecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEE-EECCEEEcCCCCcE-----ecCCCEEEEEeCHHHHHH
Confidence 345678999999999877 89999998864 4555555543 33333334433222 11111 122321111
Q ss_pred -cccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE
Q 001559 564 -ATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA 642 (1053)
Q Consensus 564 -~~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~ 642 (1053)
....+.....+++|+|+|+|.+|+.+++.|.+.+ ..|+++++++++.+++.+..+++.+
T Consensus 220 ~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~--------------------~~v~vid~~~~~~~~~~~~~~~~~~ 279 (453)
T PRK09496 220 VMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEG--------------------YSVKLIERDPERAEELAEELPNTLV 279 (453)
T ss_pred HHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCC--------------------CeEEEEECCHHHHHHHHHHCCCCeE
Confidence 1111112345789999999999999999998876 3899999999999988887667788
Q ss_pred EEecCCCHHHHH-HhhccccEEEecCCcccc-HHHHHHHHHhCC-eEEEeeccChhHHHHHHHHHHcCCeEE
Q 001559 643 VQLDVSDHKSLC-KCISQVEIVISLLPASCH-VMVANACIEFKK-HLVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 643 ~~~d~~d~~~l~-~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~-~~vD~sy~~~~~~~L~~~Ak~~Gv~~l 711 (1053)
+..|.++.+.|. ..+.++|+||.+++-... ..+...|.+.+. +++-.+..+... +..+..|+..+
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~~~~~~----~~~~~~g~~~v 347 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVNRPAYV----DLVEGLGIDIA 347 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEECCcchH----HHHHhcCCCEE
Confidence 899999998886 557889999999885432 223333444443 344444443332 34567787655
No 59
>PRK08223 hypothetical protein; Validated
Probab=97.95 E-value=5.5e-05 Score=84.37 Aligned_cols=114 Identities=18% Similarity=0.079 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEEE-ECC---HHHH----HHHHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLVA-SLY---LKDA----EEVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v~-~r~---~~~a----~~l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|.+++.+|++.| +. . ..+.|++ ++.+|+.-.+. +.+ ..|+ +++.+..|.+++
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aG-VG--~--i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V 99 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLG-IG--K--FTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEI 99 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhC-CC--e--EEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEE
Confidence 56789999999999999999999998 31 1 1222222 33333332221 110 1133 333344566655
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCcc---ccHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPAS---CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~---~~~~v~~aci~~g~~~vD~s 690 (1053)
...+.. +.+.+.++++++|+||+++... ....+.++|.+.++.+|..+
T Consensus 100 ~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~ 151 (287)
T PRK08223 100 RAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAA 151 (287)
T ss_pred EEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 444322 4556778899999999999753 23556777888888877764
No 60
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=0.00016 Score=81.29 Aligned_cols=152 Identities=23% Similarity=0.247 Sum_probs=112.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
..-|+.|+|+|.+++-.++.|...+. ++-.-|.|++|+.++|.+++..+. +.++ .
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~----------------s~~~Ivava~~s~~~A~~fAq~~~~~~~k~-------y 61 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPE----------------SNHQIVAVADPSLERAKEFAQRHNIPNPKA-------Y 61 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcc----------------cCcEEEEEecccHHHHHHHHHhcCCCCCcc-------c
Confidence 35689999999999999999876541 111358899999999999998753 2222 2
Q ss_pred HHHHHhhcc--ccEEEecCCccccHHHHHHHHHhCCeEEEee---ccChhHHHHHHHHHHcCCeEEecCC--CChhHHHH
Q 001559 651 KSLCKCISQ--VEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGEMG--LDPGIDHM 723 (1053)
Q Consensus 651 ~~l~~~i~~--~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~~l~g~G--~dPGi~~m 723 (1053)
.+.++++++ +|+|+-.+|...|..++..|++.|||++.-- -+.++..++.++|+++|+.++.|+- +.|-..
T Consensus 62 ~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~-- 139 (351)
T KOG2741|consen 62 GSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYA-- 139 (351)
T ss_pred cCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHH--
Confidence 456677765 7999999999999999999999999987753 3457788999999999999998864 455332
Q ss_pred HHHHHHHHhhhccCceEEEEeeccCCCCC
Q 001559 724 MAMKMINHAHVRKGKIKSFTSYCGGLPSP 752 (1053)
Q Consensus 724 la~~~i~~~~~~~~~v~sf~~~~Gg~p~p 752 (1053)
.++.++. ....|.+.+..+ +.+.|.+
T Consensus 140 ~lke~l~--~~~~Gdvk~v~~-~~~f~~~ 165 (351)
T KOG2741|consen 140 KLKELLS--SGVLGDVKSVEV-EFGFPFP 165 (351)
T ss_pred HHHHHHh--ccccccceEEEE-ecCCCcc
Confidence 2222232 234677888888 6555543
No 61
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.94 E-value=8.2e-05 Score=84.18 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=89.0
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|+|.|||+|.+|.+++..|++.+ .+|.++||+.++++++.+.. +. ...+.+++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g--------------------~~V~~~dr~~~~~~~l~~~g--~~----~~~s~~~~~ 54 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG--------------------HDCVGYDHDQDAVKAMKEDR--TT----GVANLRELS 54 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHcC--Cc----ccCCHHHHH
Confidence 47999999999999999999887 37899999999998887642 11 123456666
Q ss_pred HhhccccEEEecCCccccHHHHHH---HHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEecCCCChhH
Q 001559 655 KCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILGEMGLDPGI 720 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi 720 (1053)
+.+.++|+|+.++|......+.+. .++.|..++|++-. +..+.++.+.+++.|+.++. +++.-|.
T Consensus 55 ~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd-a~vsGg~ 123 (298)
T TIGR00872 55 QRLSAPRVVWVMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD-CGTSGGV 123 (298)
T ss_pred hhcCCCCEEEEEcCchHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe-cCCCCCH
Confidence 667789999999998744444433 35678889999754 45677777888899988765 6654443
No 62
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=97.92 E-value=5.2e-05 Score=83.48 Aligned_cols=113 Identities=20% Similarity=0.218 Sum_probs=88.6
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+...++|..||.|.+|+.++..|.+.| ..|+|+||+.++++++.+.-.+ + .
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G--------------------~kVtV~dr~~~k~~~f~~~Ga~--v-------~ 82 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAG--------------------YKVTVYDRTKDKCKEFQEAGAR--V-------A 82 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcC--------------------CEEEEEeCcHHHHHHHHHhchh--h-------h
Confidence 346789999999999999999999998 3899999999999999876322 1 1
Q ss_pred HHHHHhhccccEEEecCCccccHH-HH------HHHHHhCCeE-EEeeccChhH-HHHHHHHHHcCCeEEe
Q 001559 651 KSLCKCISQVEIVISLLPASCHVM-VA------NACIEFKKHL-VTASYIDDSM-SKLDEKAKGAGITILG 712 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~-v~------~aci~~g~~~-vD~sy~~~~~-~~L~~~Ak~~Gv~~l~ 712 (1053)
++-.+..+++|+||.++|.+.+.. +. ...++.|..+ ||+|.++|.+ +++.++++..|+.++.
T Consensus 83 ~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD 153 (327)
T KOG0409|consen 83 NSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD 153 (327)
T ss_pred CCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe
Confidence 334567788999999999876532 21 2245577776 8999887765 6898899999988886
No 63
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.92 E-value=7.3e-05 Score=85.03 Aligned_cols=72 Identities=26% Similarity=0.220 Sum_probs=61.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|+| +|++|+.+++.|.+.| .+|.+..|+.+++..+.. .+++.+.+|++|.+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g--------------------~~V~~l~R~~~~~~~l~~--~~v~~v~~Dl~d~~~l 58 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG--------------------YQVRCLVRNLRKASFLKE--WGAELVYGDLSLPETL 58 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--------------------CeEEEEEcChHHhhhHhh--cCCEEEECCCCCHHHH
Confidence 5799999 6999999999999887 379999999776654432 3588999999999999
Q ss_pred HHhhccccEEEecCC
Q 001559 654 CKCISQVEIVISLLP 668 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p 668 (1053)
.++++++|+||++++
T Consensus 59 ~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 59 PPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHCCCCEEEECCC
Confidence 999999999999875
No 64
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.92 E-value=9.4e-05 Score=81.21 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=95.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc-EEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI-RVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.+||.|||+|.+|+.+++.|.+.... .. -+.|.+|+.++++++.... .+ ..+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~-----------------~~~l~~V~~~~~~~~~~~~~~~---~~-------~~~ 54 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQ-----------------PCQLAALTRNAADLPPALAGRV---AL-------LDG 54 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCC-----------------ceEEEEEecCCHHHHHHhhccC---cc-------cCC
Confidence 36899999999999999998764311 12 3566888888888876642 21 133
Q ss_pred HHHh-hccccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChhH-HHHHHHHHHcCCeEEecCCCChhHHHHHHHH
Q 001559 653 LCKC-ISQVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDSM-SKLDEKAKGAGITILGEMGLDPGIDHMMAMK 727 (1053)
Q Consensus 653 l~~~-i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~~-~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~ 727 (1053)
+.++ ..+.|+||.|++...-......++++|++++-+|. -+++. ..|.+.|++.|..++.-.|---|+|.+-++.
T Consensus 55 l~~ll~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~l~aa~ 134 (267)
T PRK13301 55 LPGLLAWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQAVA 134 (267)
T ss_pred HHHHhhcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHHHHHhh
Confidence 5564 46799999999987667778899999999999984 23333 4687889999999988888777899887654
No 65
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.91 E-value=6.2e-05 Score=84.89 Aligned_cols=111 Identities=26% Similarity=0.312 Sum_probs=82.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.|||+|.+|..++..|++.+ .+|.++||+.++++++.+. ++.. ..++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g--------------------~~v~~~d~~~~~~~~~~~~--g~~~-------~~~~ 52 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG--------------------YSLVVYDRNPEAVAEVIAA--GAET-------ASTA 52 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC--------------------CeEEEEcCCHHHHHHHHHC--CCee-------cCCH
Confidence 368999999999999999999876 3789999999988877653 1211 1234
Q ss_pred HHhhccccEEEecCCccccHH-HH------HHHHHhCCeEEEeeccChh-HHHHHHHHHHcCCeEEec
Q 001559 654 CKCISQVEIVISLLPASCHVM-VA------NACIEFKKHLVTASYIDDS-MSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~-v~------~aci~~g~~~vD~sy~~~~-~~~L~~~Ak~~Gv~~l~g 713 (1053)
.++++++|+||.|+|...+.. +. ..++..|+.++|++...+. .+++.+.+++.|+.++..
T Consensus 53 ~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~ 120 (296)
T PRK11559 53 KAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDA 120 (296)
T ss_pred HHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 566789999999999765422 21 2345778999999987664 567877888888877653
No 66
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.88 E-value=8.1e-05 Score=89.25 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=91.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
...+|.+||.|.||+++|..|++.| .+|.|+||+.++++++.+... ++..+ .-..+.
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G--------------------~~V~V~NRt~~k~~~l~~~~~~~Ga~~~-~~a~s~ 63 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKG--------------------FPISVYNRTTSKVDETVERAKKEGNLPL-YGFKDP 63 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCC--------------------CeEEEECCCHHHHHHHHHhhhhcCCccc-ccCCCH
Confidence 3567999999999999999999988 389999999999999886311 11111 012245
Q ss_pred HHHHHhhccccEEEecCCccccH-HHH---HHHHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 651 KSLCKCISQVEIVISLLPASCHV-MVA---NACIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~-~v~---~aci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
+++.+.++++|+||.|+|..-.. .+. ...++.|..+||++-. +..+..+.++++++|+.++. +++.-|
T Consensus 64 ~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld-apVSGG 136 (493)
T PLN02350 64 EDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG-MGVSGG 136 (493)
T ss_pred HHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe-CCCcCC
Confidence 55555556699999999976542 222 3346789999999875 46778888899999998664 665433
No 67
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.87 E-value=3.9e-05 Score=87.93 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=87.0
Q ss_pred ecceeeeeeecc----cccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH
Q 001559 552 RISLRIGKVQET----ATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL 627 (1053)
Q Consensus 552 ~~~~~~g~~~~~----~~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~ 627 (1053)
..+.+.|++|+. .... ......++++|||+|.+|+..++.|....++ .+|.|++|+.
T Consensus 104 d~~~lT~~RTaa~~~laa~~-la~~~~~~v~iiGaG~qA~~~~~al~~~~~i------------------~~v~V~~R~~ 164 (326)
T TIGR02992 104 DNGYLTDVRTAAAGAVAARH-LAREDSSVVAIFGAGMQARLQLEALTLVRDI------------------RSARIWARDS 164 (326)
T ss_pred CCchHHHHHHHHHHHHHHHH-hCCCCCcEEEEECCCHHHHHHHHHHHHhCCc------------------cEEEEECCCH
Confidence 344566666643 1111 1123457899999999999999999753323 3799999999
Q ss_pred HHHHHHHhcCC---CceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHH
Q 001559 628 KDAEEVIEGIP---NAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKA 703 (1053)
Q Consensus 628 ~~a~~l~~~~~---~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~A 703 (1053)
++++++++.+. ++++.. .+++.+.++++|+||+|||... +.+-...++.|+|+..+....+.+++++...
T Consensus 165 ~~a~~~a~~~~~~~g~~v~~-----~~~~~~av~~aDiVvtaT~s~~-p~i~~~~l~~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 165 AKAEALALQLSSLLGIDVTA-----ATDPRAAMSGADIIVTTTPSET-PILHAEWLEPGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred HHHHHHHHHHHhhcCceEEE-----eCCHHHHhccCCEEEEecCCCC-cEecHHHcCCCcEEEeeCCCCCCceecCHHH
Confidence 99999987753 233322 2446777889999999998643 3333457899999998876556666665444
No 68
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.87 E-value=0.00012 Score=84.34 Aligned_cols=137 Identities=26% Similarity=0.258 Sum_probs=84.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----------CHHHHHHHHhcCCCceEEE
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----------YLKDAEEVIEGIPNAEAVQ 644 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----------~~~~a~~l~~~~~~~~~~~ 644 (1053)
.+|.|+|+|.+|+.+++.|.+... .+..++..+++ -+.|+|+ +.+++.+..+.........
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~----~~~~~~g~~~~-----vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKRE----YLKKRYGLDLK-----VVAIADSSGSAIDPDGLDLELALKVKEETGKLADYP 73 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHH----HHHHHcCCCEE-----EEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCc
Confidence 589999999999999999876520 00000011111 3667775 4555555544433211100
Q ss_pred ecCCCHHHHHHhhc--cccEEEecCCcccc-----HHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecC-
Q 001559 645 LDVSDHKSLCKCIS--QVEIVISLLPASCH-----VMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEM- 714 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~--~~DvVI~~~p~~~~-----~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~- 714 (1053)
+.....++.+++. +.|+||.|+|...| ...+..|+++|+|+|..+ .......+|.+.|+++|+.+..+.
T Consensus 74 -~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~ 152 (341)
T PRK06270 74 -EGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEAT 152 (341)
T ss_pred -cccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeee
Confidence 0000123445553 58999999997665 567789999999999974 333345688899999999888654
Q ss_pred --CCChhHH
Q 001559 715 --GLDPGID 721 (1053)
Q Consensus 715 --G~dPGi~ 721 (1053)
|..|-+.
T Consensus 153 v~~glPii~ 161 (341)
T PRK06270 153 VGGAMPIIN 161 (341)
T ss_pred eeechhHHH
Confidence 3445443
No 69
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=97.86 E-value=1.1e-05 Score=91.14 Aligned_cols=70 Identities=30% Similarity=0.571 Sum_probs=65.9
Q ss_pred ccceeeecccccccccchhhhhHHHHHcCCcEEEEEEEeCCCCcCccccccccCCCCcchhhhhhccccc
Q 001559 466 KHNLLVSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTS 535 (1053)
Q Consensus 466 ~~~~~~~~~gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s~~~sl~~lnvt~p~k~~l~~~ld~~~~ 535 (1053)
++++.|+++||++|++++|++||....++|+|++.+|+|++.....|.+.+.|+.|+.+.|..+|.++..
T Consensus 1 ~~~r~iel~GHiiDs~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~~~~~l~~Il~~l~~ 70 (407)
T TIGR00300 1 MESREIELEGHLIDSLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSARDHQHLEEILTELID 70 (407)
T ss_pred CcceEEEEeeeeechhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999887743
No 70
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.84 E-value=8.7e-05 Score=83.90 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=82.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.+++..|++.| .+|.++||+.++++++.+.- +. ...+..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G--------------------~~V~v~d~~~~~~~~~~~~g--~~-------~~~s~~ 52 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG--------------------HQLQVFDVNPQAVDALVDKG--AT-------PAASPA 52 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC--------------------CeEEEEcCCHHHHHHHHHcC--Cc-------ccCCHH
Confidence 57999999999999999999887 37999999999998877641 11 112345
Q ss_pred HhhccccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 655 KCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
++++++|+||.|+|.... ..+. ...+..|+.++|++-.++ .++++.+.++++|+.++.
T Consensus 53 ~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ld 118 (296)
T PRK15461 53 QAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMD 118 (296)
T ss_pred HHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 677899999999998642 2221 123567888999987654 567888889999988774
No 71
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=1.4e-05 Score=86.79 Aligned_cols=69 Identities=33% Similarity=0.618 Sum_probs=63.6
Q ss_pred cceeeecccccccccchhhhhHHHHHcCCcEEEEEEEeCCCCcCccccccccCCCCcchhhhhhccccc
Q 001559 467 HNLLVSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTS 535 (1053)
Q Consensus 467 ~~~~~~~~gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s~~~sl~~lnvt~p~k~~l~~~ld~~~~ 535 (1053)
.++.|+++||++|+.++|+|||+....+|+|++++|++++...+.|.+.+-|..|+.+.+-++++++-+
T Consensus 2 ~~Reiel~GHliDs~il~ralD~I~d~gG~f~vLef~~Gk~k~dpS~A~i~V~~~~~~~leeIl~eL~~ 70 (415)
T COG1915 2 ESREIELEGHLIDSLILNRALDIIVDMGGDFQVLEFNLGKRKTDPSYAEILVSAPDHEHLEEILSELID 70 (415)
T ss_pred CceEEEeeceehhhhhhHHHHHHHhhcCCceEEEEEecccccCCCCceEEEEeCCCHHHHHHHHHHHHH
Confidence 457799999999999999999999999999999999999999999999999999999988888877644
No 72
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.82 E-value=3.1e-05 Score=87.84 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d 649 (1053)
...++++|||+|.+|+..++.+....++ .+|.|++|+.++++++++.+.. +.+. +
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~------------------~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~-- 179 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPV------------------RRVWVRGRTAASAAAFCAHARALGPTAE---P-- 179 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC------------------CEEEEEcCCHHHHHHHHHHHHhcCCeeE---E--
Confidence 3467899999999999999999753222 3799999999999999987642 1221 1
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHc
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGA 706 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~ 706 (1053)
+++.++++++|+||+|||... ++....++.|+|+.-+....+.+++++.+.-.+
T Consensus 180 -~~~~~av~~aDiVitaT~s~~--Pl~~~~~~~g~hi~~iGs~~p~~~El~~~~~~~ 233 (304)
T PRK07340 180 -LDGEAIPEAVDLVVTATTSRT--PVYPEAARAGRLVVAVGAFTPDMAELAPRTVRG 233 (304)
T ss_pred -CCHHHHhhcCCEEEEccCCCC--ceeCccCCCCCEEEecCCCCCCcccCCHHHHhh
Confidence 345667789999999998653 333445799999998876666777766554443
No 73
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.81 E-value=0.00024 Score=80.54 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.++++.|++.+ .+|.++||++++++++.+. ++.. ..+.+++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g--------------------~~v~v~dr~~~~~~~~~~~--g~~~----~~~~~e~~ 54 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG--------------------HEVVGYDRNPEAVEALAEE--GATG----ADSLEELV 54 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC--------------------CeEEEEECCHHHHHHHHHC--CCee----cCCHHHHH
Confidence 47999999999999999999887 3799999999999887653 2221 12344443
Q ss_pred HhhccccEEEecCCcc-ccHHHHH---HHHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 655 KCISQVEIVISLLPAS-CHVMVAN---ACIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~-~~~~v~~---aci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
+.+.++|+||.++|.. ....+.. ..++.|..+||++-. +..+..+.+.++++|+.++. +.+.-|
T Consensus 55 ~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~ 123 (301)
T PRK09599 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGG 123 (301)
T ss_pred hhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcC
Confidence 3333579999999976 2233332 345678889999754 44667788899999999885 665433
No 74
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.80 E-value=0.00012 Score=83.46 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|.+|+.++.+|...+. .+|.+++|+.++++++++.++. .++ +.+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-------------------~~V~v~~r~~~ra~~la~~~g~-~~~-----~~~ 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-------------------AEITIANRTYERAEELAKELGG-NAV-----PLD 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-------------------CEEEEEeCCHHHHHHHHHHcCC-eEE-----eHH
Confidence 457899999999999999999987652 3799999999999999988763 222 335
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHH----hCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIE----FKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~----~g~~~vD~sy 691 (1053)
++.+.+.++|+||+|+|......+....++ .+..++|++-
T Consensus 231 ~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 231 ELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 677888899999999986554333333332 2457899983
No 75
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.80 E-value=0.00017 Score=71.84 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH--
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE-- 631 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~-- 631 (1053)
|.++|+|+|+|++|..++..|++.| + -+++++|.+ ..|++
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~G-v------------------~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~ 61 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSG-V------------------GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAA 61 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHT-T------------------SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhC-C------------------CceeecCCcceeecccccccccccccchhHHHHHH
Confidence 3579999999999999999999988 3 267777764 11333
Q ss_pred --HHHhcCCCceEEEe--cCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeec
Q 001559 632 --EVIEGIPNAEAVQL--DVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 632 --~l~~~~~~~~~~~~--d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy 691 (1053)
++.+..|.+++... ++ +.+.+.++++++|+||+|+... ....+.+.|.+.++++++...
T Consensus 62 ~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 62 KERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp HHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 33344566554433 34 4567788889999999998543 334567788899999888764
No 76
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.79 E-value=0.00018 Score=76.78 Aligned_cols=100 Identities=25% Similarity=0.310 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE 632 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~ 632 (1053)
.+..+|+|+|+|++|..+++.|+..| + -+++++|.+ ..|++.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~G-v------------------~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~ 79 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAG-V------------------GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEV 79 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEecCCEEcccchhhhhccChhhCCChHHHH
Confidence 46789999999999999999999998 3 267777765 234443
Q ss_pred HH----hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 633 VI----EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 633 l~----~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
++ +..|.+++...+.. +.+.+.+.++++|+||+|+.... ...+.+.|.+.++.+++..
T Consensus 80 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 80 AAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 33 33455554433322 44667788999999999986432 2446677888888887765
No 77
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.79 E-value=0.00011 Score=82.70 Aligned_cols=108 Identities=25% Similarity=0.294 Sum_probs=80.6
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHH
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCK 655 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~ 655 (1053)
+|.|||+|.+|.+++..|++.| .+|.+++|+.++++++.+.- .. ...+..+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G--------------------~~V~~~dr~~~~~~~~~~~g--~~-------~~~~~~~ 51 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG--------------------YQLHVTTIGPEVADELLAAG--AV-------TAETARQ 51 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC--------------------CeEEEEcCCHHHHHHHHHCC--Cc-------ccCCHHH
Confidence 4899999999999999999887 38999999999988876541 11 1123557
Q ss_pred hhccccEEEecCCccccH-HHH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 656 CISQVEIVISLLPASCHV-MVA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 656 ~i~~~DvVI~~~p~~~~~-~v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
.++++|+||.|+|..... .+. ...+..|+.++|++...+ .++++.+.+++.|+.++.
T Consensus 52 ~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 52 VTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 788999999999975432 221 122356888999987655 456788888888988877
No 78
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.77 E-value=0.00021 Score=80.85 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=80.1
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.+||+|.+|.++++.|++.+ .+|.++||+.++++++.+. ++.. ..+.+++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g--------------------~~v~v~dr~~~~~~~~~~~--g~~~----~~s~~~~~ 54 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG--------------------HEVVGYDVNQEAVDVAGKL--GITA----RHSLEELV 54 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHHC--CCee----cCCHHHHH
Confidence 47999999999999999999886 3789999999998887543 1211 11333333
Q ss_pred HhhccccEEEecCCcc-ccHHHHHH---HHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEe
Q 001559 655 KCISQVEIVISLLPAS-CHVMVANA---CIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~-~~~~v~~a---ci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
+-..++|+||.|+|.. ....+... .++.|+.++|+|-. +....++.+.+++.|+.++.
T Consensus 55 ~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 55 SKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HhCCCCCEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 2223479999999986 33344333 34678899999865 45677888889999987754
No 79
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.77 E-value=4.8e-05 Score=87.72 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=66.2
Q ss_pred CCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEE-EEEECCHHHHHHHHhcCCCceEE-EecCCCH
Q 001559 574 TSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV-LVASLYLKDAEEVIEGIPNAEAV-QLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v-~v~~r~~~~a~~l~~~~~~~~~~-~~d~~d~ 650 (1053)
++||+|+|+ |.+|+.+++.|.+++. .++ .+++| .+..+.+.+.++++... ..++.+.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~-------------------~elv~v~~~-~~~g~~l~~~~~~~~~~~~~~~~~~ 61 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE-------------------VEIVAVTSR-SSAGKPLSDVHPHLRGLVDLVLEPL 61 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC-------------------ceEEEEECc-cccCcchHHhCcccccccCceeecC
Confidence 579999995 9999999999998753 354 44553 33334444444432211 1122222
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
+.. ...++|+|+.|+|...|..++.+|+++|+++||.|
T Consensus 62 ~~~--~~~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S 99 (343)
T PRK00436 62 DPE--ILAGADVVFLALPHGVSMDLAPQLLEAGVKVIDLS 99 (343)
T ss_pred CHH--HhcCCCEEEECCCcHHHHHHHHHHHhCCCEEEECC
Confidence 222 34679999999999999999999999999999998
No 80
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=97.76 E-value=0.00021 Score=78.43 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEE-EE---CCHHHHH----HHHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLV-AS---LYLKDAE----EVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v-~~---r~~~~a~----~l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|++.| +. .+ .+.|++ ++.+|+.-.+ .. .-..|++ ++.+..|.+++
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~G-vg--~i--~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i 96 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAG-VG--NL--TLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAI 96 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcC-CC--EE--EEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEE
Confidence 45789999999999999999999988 31 11 111211 3333332111 11 1112333 33444566665
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
...+.. +.+.+.++++++|+||+|+.... ...+.+.|.+.++++|..+
T Consensus 97 ~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 97 NPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred EEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 544432 45667788999999999986533 3456778888888888765
No 81
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00041 Score=77.49 Aligned_cols=131 Identities=24% Similarity=0.275 Sum_probs=92.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc--CCCceEEEe-----
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG--IPNAEAVQL----- 645 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~--~~~~~~~~~----- 645 (1053)
+..||.+||+|.+|+-++...++.++. .-|.+.+|+...+++..+. .+..+++..
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm------------------~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~ 77 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGM------------------EVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASK 77 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCc------------------eEEEEecccchHHHHHHHHhcCCcccccccchhhH
Confidence 457999999999999999999877643 2578899999988877653 222222211
Q ss_pred ----------cCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeeccChhH--HHHHHHHHHcCCeEEe
Q 001559 646 ----------DVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASYIDDSM--SKLDEKAKGAGITILG 712 (1053)
Q Consensus 646 ----------d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy~~~~~--~~L~~~Ak~~Gv~~l~ 712 (1053)
-++|..++.-.....|+||++|+.. ....+...++.+++|+|=+....+-| .-|.++|.++|+.+-.
T Consensus 78 ~a~Ai~aGKi~vT~D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~ 157 (438)
T COG4091 78 MADAIEAGKIAVTDDAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSG 157 (438)
T ss_pred HHHHHhcCcEEEecchhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEec
Confidence 1222222221223479999999854 56788889999999998776533222 3577889999999999
Q ss_pred cCCCChhHH
Q 001559 713 EMGLDPGID 721 (1053)
Q Consensus 713 g~G~dPGi~ 721 (1053)
+.|=.|+.-
T Consensus 158 ~~GDeP~~~ 166 (438)
T COG4091 158 GAGDEPSSC 166 (438)
T ss_pred cCCCCcHHH
Confidence 999889743
No 82
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00026 Score=76.94 Aligned_cols=112 Identities=22% Similarity=0.252 Sum_probs=82.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|+++|+|+|.+|+.+|+.|.+.| ..|++++++.+++++....-..+.+++.|.+|.+.|.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--------------------~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~ 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--------------------HNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLE 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--------------------CceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHH
Confidence 68999999999999999999987 2799999999999885553234788999999999999
Q ss_pred Hh-hccccEEEecCCccc-cHHHHHHHHH-hCCeEEEeeccChhHHHHHHHHHHcCCe
Q 001559 655 KC-ISQVEIVISLLPASC-HVMVANACIE-FKKHLVTASYIDDSMSKLDEKAKGAGIT 709 (1053)
Q Consensus 655 ~~-i~~~DvVI~~~p~~~-~~~v~~aci~-~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ 709 (1053)
++ +.++|+||-+++..- ..-+...+.+ .|.+.+-+-...+... +..++.|+.
T Consensus 61 ~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~---~~~~~~g~~ 115 (225)
T COG0569 61 EAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHE---KVLEKLGAD 115 (225)
T ss_pred hcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHH---HHHHHcCCc
Confidence 77 899999999998643 2233333333 6777665544333221 334556743
No 83
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.75 E-value=1.9e-05 Score=77.69 Aligned_cols=109 Identities=22% Similarity=0.209 Sum_probs=70.2
Q ss_pred CeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-H----HHHHHhcCCCceEEEecCC
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-D----AEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~----a~~l~~~~~~~~~~~~d~~ 648 (1053)
+||+|+|+ |++|+.+++.+.+..++ .-+.+++|..+ . .-+++...+ ..+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~------------------~lv~~v~~~~~~~~g~d~g~~~~~~~------~~~~ 56 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF------------------ELVGAVDRKPSAKVGKDVGELAGIGP------LGVP 56 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE------------------EEEEEEETTTSTTTTSBCHHHCTSST-------SSB
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc------------------EEEEEEecCCcccccchhhhhhCcCC------cccc
Confidence 48999998 99999999999986633 13667777751 1 111111111 1111
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcC
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAG 707 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~G 707 (1053)
-.+++.+++..+|+||+.+-+......++.|+++|+++|--+ |...+...|.+.|++.+
T Consensus 57 v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~ 117 (124)
T PF01113_consen 57 VTDDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIP 117 (124)
T ss_dssp EBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSE
T ss_pred cchhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCC
Confidence 125678888889999999955555677889999999988755 55566777876666633
No 84
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.72 E-value=0.00023 Score=86.26 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=65.3
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-------------
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------------- 637 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------------- 637 (1053)
..++.|+|+| +|++|+.+++.|++.| .+|.++.|+.++++++.+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G--------------------~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG--------------------FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHhhhhcccccccccc
Confidence 4467899999 6999999999999987 37999999999887765422
Q ss_pred CCceEEEecCCCHHHHHHhhccccEEEecCCc
Q 001559 638 PNAEAVQLDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 638 ~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.++.++.+|++|.+++.+.+.++|+||++++.
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCIGA 169 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEcccc
Confidence 23678899999999999999999999999865
No 85
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.71 E-value=0.00025 Score=84.84 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=88.1
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~~~ 652 (1053)
.+|.|||+|.+|.++|..|++.| .+|.+.||+.++++++.+... +..... ..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G--------------------~~V~v~dr~~~~~~~l~~~~~~~g~~i~~--~~s~~e 59 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG--------------------FKISVYNRTYEKTEEFVKKAKEGNTRVKG--YHTLEE 59 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHhhhhcCCccee--cCCHHH
Confidence 57999999999999999999988 389999999999998876421 211111 123444
Q ss_pred HHHhhccccEEEecCCcccc-HHHHH---HHHHhCCeEEEeec-cChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 653 LCKCISQVEIVISLLPASCH-VMVAN---ACIEFKKHLVTASY-IDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~-~~v~~---aci~~g~~~vD~sy-~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
+.+.++++|+||-++|+... ..+.. ..++.|..++|.+- .+.++..+.++++++|+.++. +|+.-|..
T Consensus 60 ~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld-apVSGG~~ 132 (470)
T PTZ00142 60 LVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG-MGVSGGEE 132 (470)
T ss_pred HHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc-CCCCCCHH
Confidence 44444468988888776543 33332 34678899999985 356777788899999998664 77655544
No 86
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.69 E-value=0.00017 Score=84.20 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE 632 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~ 632 (1053)
.+.++|+|+|+|++|+.++.+|++.| + -+++++|++ ..|++.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~G-v------------------g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~ 193 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAG-V------------------GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDS 193 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEecchhhccccccchhhCCCcHHHH
Confidence 45678999999999999999999998 3 267777776 345554
Q ss_pred HHh----cCCCceEEEecCC-CHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 633 VIE----GIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 633 l~~----~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
+++ ..|.+++...+.. +.+.+.++++++|+||+|+... ....+.+.|.+.++++|..+
T Consensus 194 ~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 194 AAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred HHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 443 3465554433322 4456778889999999999653 33457788999999988875
No 87
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=97.68 E-value=0.00024 Score=77.32 Aligned_cols=112 Identities=24% Similarity=0.236 Sum_probs=84.1
Q ss_pred EEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhh-ccccEEEecCCccccHHHHHHHHHhCCeEEEeec----cC
Q 001559 619 RVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCI-SQVEIVISLLPASCHVMVANACIEFKKHLVTASY----ID 693 (1053)
Q Consensus 619 ~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i-~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy----~~ 693 (1053)
-+.|+|++.++++++++.+. +.. .+| +++++ .+.|+|+.|+|...|.+++..|+++|+|++.++. ..
T Consensus 4 LvaV~D~~~e~a~~~a~~~g-~~~----~~d---~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gAlad~ 75 (229)
T TIGR03855 4 IAAVYDRNPKDAKELAERCG-AKI----VSD---FDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGALADR 75 (229)
T ss_pred EEEEECCCHHHHHHHHHHhC-Cce----ECC---HHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcccCCH
Confidence 47889999999999998764 222 123 34444 4799999999999999999999999999999875 23
Q ss_pred hhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeec
Q 001559 694 DSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYC 746 (1053)
Q Consensus 694 ~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~ 746 (1053)
....+|.+.|++.|+.++...|.--|+|.+-+. +.+.+.++.+.+
T Consensus 76 e~~~~l~~aA~~~g~~l~i~sGai~g~d~l~a~--------~ig~~~~V~i~~ 120 (229)
T TIGR03855 76 ELRERLREVARSSGRKVYIPSGAIGGLDALKAA--------SLGRIERVVLTT 120 (229)
T ss_pred HHHHHHHHHHHhcCCEEEEChHHHHHHHHHHhc--------ccCCceEEEEEE
Confidence 556788899999999999988876666555322 224566665543
No 88
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.67 E-value=0.00019 Score=85.19 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=82.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+.+|.|+|+|.+|+.+++.|.++... ...+.+.+++ -+.|++|+.++++.. ..+... ++ .++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~----l~~~~g~~i~-----l~~V~~~~~~~~~~~--~~~~~~-----~~--~d~ 64 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEE----IAARAGRPIE-----IKKVAVRDLEKDRGV--DLPGIL-----LT--TDP 64 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHH----HHHhcCCCEE-----EEEEEeCChhhccCC--CCcccc-----ee--CCH
Confidence 46899999999999999988665310 0000001111 367889987765421 111111 11 234
Q ss_pred HHhhc--cccEEEecCCc-cccHHHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCCeEEecCCCC
Q 001559 654 CKCIS--QVEIVISLLPA-SCHVMVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGITILGEMGLD 717 (1053)
Q Consensus 654 ~~~i~--~~DvVI~~~p~-~~~~~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv~~l~g~G~d 717 (1053)
.+++. +.|+||.|++. ..|.....+|+++|+|+|+..- ......+|.+.|+++|+.+..++.+.
T Consensus 65 ~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ 133 (426)
T PRK06349 65 EELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVA 133 (426)
T ss_pred HHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEee
Confidence 55554 58999999865 4567889999999999998752 23456788899999999888664333
No 89
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=97.67 E-value=0.00038 Score=76.60 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=68.6
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~- 631 (1053)
.+.++|+|+|+|++|..++.+|+..| + -+++++|.+ ..|++
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~G-v------------------g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~ 90 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAG-V------------------GTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVES 90 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEEcCCEECcchhhhhhcCChhhCCChHHHH
Confidence 56789999999999999999999988 3 144444432 12333
Q ss_pred ---HHHhcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+.. +.+.+.++++++|+||+|+.... ...+.+.|.+.++.+|..+
T Consensus 91 a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 91 ARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGA 154 (245)
T ss_pred HHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEee
Confidence 33444566555444322 45567788899999999996432 2446677888888888764
No 90
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.66 E-value=0.00011 Score=71.89 Aligned_cols=94 Identities=23% Similarity=0.249 Sum_probs=66.8
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCCCHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSDHK 651 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d~~ 651 (1053)
||.|+| +|++|+.+++.|.+++.+ ..+.+++++.+.-+.+...++ ......++-.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~------------------e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 62 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDF------------------ELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPE 62 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTE------------------EEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCc------------------cEEEeeeeccccCCeeehhccccccccceeEeecchh
Confidence 699999 899999999999997632 146667776634444444443 2222222112332
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
.++++|+|+.|+|...+...+..+++.|..+||+|.
T Consensus 63 ----~~~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 63 ----ELSDVDVVFLALPHGASKELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp ----HHTTESEEEE-SCHHHHHHHHHHHHHTTSEEEESSS
T ss_pred ----HhhcCCEEEecCchhHHHHHHHHHhhCCcEEEeCCH
Confidence 338899999999999888889999999999999984
No 91
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.66 E-value=0.00032 Score=81.78 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=73.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
...+|+|+|+|.+|+.+++.|...| .+|.++||+.++++++...+.. .+..+..+.+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--------------------a~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~ 223 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--------------------ATVTILDINIDRLRQLDAEFGG--RIHTRYSNAYE 223 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--------------------CeEEEEECCHHHHHHHHHhcCc--eeEeccCCHHH
Confidence 4567999999999999999999887 3799999999998888766542 22334556778
Q ss_pred HHHhhccccEEEecCCcc-c-cH----HHHHHHHHhCCeEEEeecc
Q 001559 653 LCKCISQVEIVISLLPAS-C-HV----MVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~-~-~~----~v~~aci~~g~~~vD~sy~ 692 (1053)
+.+.++++|+||++++.. . .+ .-....++.|..++|+++.
T Consensus 224 l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 224 IEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred HHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 889999999999998431 1 11 1122346778889998853
No 92
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.65 E-value=0.00038 Score=80.14 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=71.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---------------------HHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---------------------KDA 630 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---------------------~~a 630 (1053)
.+.++|+|+|+|++|..++.+|++.| + -+++++|++. .|+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aG-v------------------g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka 82 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAG-I------------------GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKA 82 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEEcCCcccccccCccccccHHHccCCccHH
Confidence 56789999999999999999999998 3 2677777753 233
Q ss_pred H----HHHhcCCCce--EEEecCCCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 631 E----EVIEGIPNAE--AVQLDVSDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 631 ~----~l~~~~~~~~--~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
+ ++.+..|.++ .+..++ +.+.+.++++++|+||+|+.... ...+.+.|.+.|+.+|..+
T Consensus 83 ~aa~~~l~~inp~v~i~~~~~~~-~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 83 IAAKEHLRKINSEVEIVPVVTDV-TVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHHHHHHHHHCCCcEEEEEeccC-CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3 3333346554 344455 35678889999999999996543 2456678999999888765
No 93
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.63 E-value=0.0004 Score=79.95 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---------------------HHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---------------------KDA 630 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---------------------~~a 630 (1053)
.+..+|+|+|+|++|++++.+|++.| + -+++++|.+. .|+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aG-v------------------g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka 82 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAG-V------------------GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKA 82 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEEeCCccCHHHcCccccccHHHhcCCCcHH
Confidence 46789999999999999999999998 3 2677777752 233
Q ss_pred HH----HHhcCCCce--EEEecCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeec
Q 001559 631 EE----VIEGIPNAE--AVQLDVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 631 ~~----l~~~~~~~~--~~~~d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy 691 (1053)
+. +.+..|.++ .+..++ +.+++.++++++|+||+|+... ....+.+.|.+.++.++..+.
T Consensus 83 ~aa~~~l~~inp~v~v~~~~~~~-~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~ 149 (339)
T PRK07688 83 VAAKKRLEEINSDVRVEAIVQDV-TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGAC 149 (339)
T ss_pred HHHHHHHHHHCCCcEEEEEeccC-CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 33 223345544 333344 4566778899999999998654 335677889999999887653
No 94
>PLN02427 UDP-apiose/xylose synthase
Probab=97.63 E-value=0.00035 Score=81.65 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc-----CCCceEEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG-----IPNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~-----~~~~~~~~ 644 (1053)
..+.|+|+|.| +|++|+.+++.|++.+. .+|.+++|+.++.+.+... .++++++.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g-------------------~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~ 71 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETP-------------------HKVLALDVYNDKIKHLLEPDTVPWSGRIQFHR 71 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCC-------------------CEEEEEecCchhhhhhhccccccCCCCeEEEE
Confidence 34568899999 79999999999998742 3788889887766655432 13578899
Q ss_pred ecCCCHHHHHHhhccccEEEecCC
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p 668 (1053)
+|++|.+.+.++++++|+||+++.
T Consensus 72 ~Dl~d~~~l~~~~~~~d~ViHlAa 95 (386)
T PLN02427 72 INIKHDSRLEGLIKMADLTINLAA 95 (386)
T ss_pred cCCCChHHHHHHhhcCCEEEEccc
Confidence 999999999999999999999985
No 95
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.61 E-value=0.00025 Score=79.82 Aligned_cols=106 Identities=29% Similarity=0.357 Sum_probs=80.6
Q ss_pred EEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhc
Q 001559 579 IIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658 (1053)
Q Consensus 579 IiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~ 658 (1053)
+||+|.+|.+++..|++.| .+|.+++|+.++++++.+. ++.. ..++.+.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G--------------------~~V~v~dr~~~~~~~l~~~--g~~~-------~~s~~~~~~ 51 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG--------------------HPVRVFDLFPDAVEEAVAA--GAQA-------AASPAEAAE 51 (288)
T ss_pred CCcccHhHHHHHHHHHhCC--------------------CeEEEEeCCHHHHHHHHHc--CCee-------cCCHHHHHh
Confidence 5899999999999999887 3799999999998887653 1211 123567788
Q ss_pred cccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccChh-HHHHHHHHHHcCCeEEec
Q 001559 659 QVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDDS-MSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 659 ~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~~-~~~L~~~Ak~~Gv~~l~g 713 (1053)
++|+||.|+|.... ..+. ...+..|+.++|++.+++. .+++.+.++++|+.++..
T Consensus 52 ~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda 114 (288)
T TIGR01692 52 GADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA 114 (288)
T ss_pred cCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC
Confidence 99999999997543 2332 2345678899999987664 577888899999988763
No 96
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.61 E-value=0.0005 Score=74.85 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccc-cccCCCccEEEE-E---ECCHHHHHHHH----hcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMET-DFEWQNDIRVLV-A---SLYLKDAEEVI----EGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~v~v-~---~r~~~~a~~l~----~~~~~~~~ 642 (1053)
.+.++|+|+|+|++|..++..|++.| +. .+ .+.| |.++.+|+.-.. . +-...|++.++ +..|.+++
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~G-vg---~i-~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i 93 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAG-VG---KL-GLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEI 93 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcC-CC---EE-EEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEE
Confidence 45789999999999999999999998 31 00 1111 112222221111 0 01122443333 34455544
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeec
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy 691 (1053)
...+.. +.+.+.+.++++|+||+|+.... ...+.+.|.+.++.+++...
T Consensus 94 ~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~ 144 (228)
T cd00757 94 EAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAV 144 (228)
T ss_pred EEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 333322 45667788899999999996432 34567788888988888753
No 97
>PLN00203 glutamyl-tRNA reductase
Probab=97.59 E-value=0.00037 Score=84.23 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|||+|.+|+.++.+|...| + .+|+|++|+.++++++++.+++...... +.+
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G-~------------------~~V~V~nRs~era~~La~~~~g~~i~~~---~~~ 321 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKG-C------------------TKMVVVNRSEERVAALREEFPDVEIIYK---PLD 321 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCC-C------------------CeEEEEeCCHHHHHHHHHHhCCCceEee---cHh
Confidence 45689999999999999999999876 2 3799999999999999987764332222 335
Q ss_pred HHHHhhccccEEEecCCccc---cHHHHHHHHHh----C--CeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASC---HVMVANACIEF----K--KHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~~----g--~~~vD~sy 691 (1053)
++.+.+.++|+||+|||... ....++.+... + ..++|++-
T Consensus 322 dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 322 EMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred hHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 56778899999999996542 23444443321 1 36899974
No 98
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.59 E-value=0.0005 Score=79.70 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-------------------HHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-------------------KDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-------------------~~a~- 631 (1053)
.+..+|+|+|+|++|..++.+|+..| + -+++++|.+. .|++
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~G-v------------------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~ 86 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAG-V------------------GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAES 86 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEEcccccccCcccChhHCCChHHHH
Confidence 56789999999999999999999988 3 1455555431 2333
Q ss_pred ---HHHhcCCCceEEEecCC-CHHHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+.. +.+++.++++++|+||+|+..... ..+..+|.+.++.+|..+
T Consensus 87 a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 87 AREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred HHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 33444566554433222 456677889999999999965432 456788999999988865
No 99
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.58 E-value=0.00022 Score=78.79 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=68.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC-----ceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-----AEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-----~~~~~~ 645 (1053)
.+++.++|-| ++++|+.+|+.|+++| ..|.++.|+.++++++++++.+ ++++.+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g--------------------~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~ 63 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG--------------------YNLILVARREDKLEALAKELEDKTGVEVEVIPA 63 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC
Confidence 4578899999 6999999999999998 3899999999999999877653 568999
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCcccc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPASCH 672 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~~~~ 672 (1053)
|+++.+++..+.. .+|++||+++++..
T Consensus 64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~ 97 (265)
T COG0300 64 DLSDPEALERLEDELKERGGPIDVLVNNAGFGTF 97 (265)
T ss_pred cCCChhHHHHHHHHHHhcCCcccEEEECCCcCCc
Confidence 9998887776543 48999999998754
No 100
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.58 E-value=0.00034 Score=75.79 Aligned_cols=88 Identities=25% Similarity=0.276 Sum_probs=67.4
Q ss_pred EEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--HHHHHHhcCCCceEEEecCCCHHHH
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--DAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 577 VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+| +|.+|+.+++.|.+.+ .+|.+.-|+.. .++++.. .+++++.+|..|.++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~--------------------~~V~~l~R~~~~~~~~~l~~--~g~~vv~~d~~~~~~l 58 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG--------------------FSVRALVRDPSSDRAQQLQA--LGAEVVEADYDDPESL 58 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--------------------GCEEEEESSSHHHHHHHHHH--TTTEEEES-TT-HHHH
T ss_pred CEEECCccHHHHHHHHHHHhCC--------------------CCcEEEEeccchhhhhhhhc--ccceEeecccCCHHHH
Confidence 78999 5999999999999854 48999999864 3444433 2578899999999999
Q ss_pred HHhhccccEEEecCCcc------ccHHHHHHHHHhCCeE
Q 001559 654 CKCISQVEIVISLLPAS------CHVMVANACIEFKKHL 686 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~------~~~~v~~aci~~g~~~ 686 (1053)
.+.++++|+|+.++|.. ....++++|.++|+..
T Consensus 59 ~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~ 97 (233)
T PF05368_consen 59 VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKH 97 (233)
T ss_dssp HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SE
T ss_pred HHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccce
Confidence 99999999999999853 2345677888888643
No 101
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.56 E-value=0.00081 Score=71.78 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=77.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.+.++|+|+|.|.+|+.+++.|.+.| .+|.+.|++.++++++.+.+. .+. ++.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G--------------------~~Vvv~D~~~~~~~~~~~~~g-~~~--v~~--- 78 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEG--------------------AKLIVADINEEAVARAAELFG-ATV--VAP--- 78 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHcC-CEE--Ecc---
Confidence 467789999999999999999999987 378899999998888877653 332 222
Q ss_pred HHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeeccChhH-HHHHHHHHHcCCeEEecCCC
Q 001559 651 KSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASYIDDSM-SKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy~~~~~-~~L~~~Ak~~Gv~~l~g~G~ 716 (1053)
+++.. .++|+++.|+... .+...++. ++ .+.+++. .+.+-+ .+-.+..+++|+.++++++.
T Consensus 79 ~~l~~--~~~Dv~vp~A~~~~I~~~~~~~-l~-~~~v~~~-AN~~~~~~~~~~~L~~~Gi~~~Pd~~~ 141 (200)
T cd01075 79 EEIYS--VDADVFAPCALGGVINDDTIPQ-LK-AKAIAGA-ANNQLADPRHGQMLHERGILYAPDYVV 141 (200)
T ss_pred hhhcc--ccCCEEEecccccccCHHHHHH-cC-CCEEEEC-CcCccCCHhHHHHHHHCCCEEeCceee
Confidence 22222 2799999887643 23333322 22 2334444 333323 44556678999999997774
No 102
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.56 E-value=0.00078 Score=73.92 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=63.7
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
..++++|+|+| +|++|+.++..|++.+ .+|++..|+.+++++.....++++++.+|++|
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g--------------------~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d 73 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKG--------------------FAVKAGVRDVDKAKTSLPQDPSLQIVRADVTE 73 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCC--------------------CEEEEEecCHHHHHHhcccCCceEEEEeeCCC
Confidence 35578999999 6999999999999876 37888899988876654433458889999987
Q ss_pred -HHHHHHhh-ccccEEEecCCcc
Q 001559 650 -HKSLCKCI-SQVEIVISLLPAS 670 (1053)
Q Consensus 650 -~~~l~~~i-~~~DvVI~~~p~~ 670 (1053)
.+.+.+.+ .++|+||++++..
T Consensus 74 ~~~~l~~~~~~~~d~vi~~~g~~ 96 (251)
T PLN00141 74 GSDKLVEAIGDDSDAVICATGFR 96 (251)
T ss_pred CHHHHHHHhhcCCCEEEECCCCC
Confidence 46677777 6899999988753
No 103
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.56 E-value=0.00028 Score=72.73 Aligned_cols=73 Identities=21% Similarity=0.182 Sum_probs=63.0
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|||.||| +|.+|+.+++.+..+| .+|+.+-|++++..++ +++.+.+.|+.|.+++
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG--------------------HeVTAivRn~~K~~~~----~~~~i~q~Difd~~~~ 56 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG--------------------HEVTAIVRNASKLAAR----QGVTILQKDIFDLTSL 56 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC--------------------CeeEEEEeChHhcccc----ccceeecccccChhhh
Confidence 6899999 6999999999999988 3899999998876443 4567889999999999
Q ss_pred HHhhccccEEEecCCccc
Q 001559 654 CKCISQVEIVISLLPASC 671 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~ 671 (1053)
.+.+.++|+||++.....
T Consensus 57 a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 57 ASDLAGHDAVISAFGAGA 74 (211)
T ss_pred HhhhcCCceEEEeccCCC
Confidence 999999999999987653
No 104
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.55 E-value=0.00068 Score=81.20 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=88.8
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHHHH
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~l~ 654 (1053)
+|.|||+|.||.++|+.|++.| .+|.+.+|+.++++++.+... ...+. ...+.+++.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G--------------------~~V~v~drt~~~~~~l~~~~~~g~~~~--~~~s~~e~v 58 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG--------------------FTVSVYNRTPEKTDEFLAEHAKGKKIV--GAYSIEEFV 58 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC--------------------CeEEEEeCCHHHHHHHHhhccCCCCce--ecCCHHHHH
Confidence 3789999999999999999987 389999999999999886522 11111 123456666
Q ss_pred HhhccccEEEecCCcccc-HHHHH---HHHHhCCeEEEeec-cChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 655 KCISQVEIVISLLPASCH-VMVAN---ACIEFKKHLVTASY-IDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~-~~v~~---aci~~g~~~vD~sy-~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
+.++++|+||-++|.... ..+.. .+++.|..++|.+- .+.++..+.++++++|+.++. +|+.-|..
T Consensus 59 ~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvd-apVsGG~~ 129 (467)
T TIGR00873 59 QSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVG-SGVSGGEE 129 (467)
T ss_pred hhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEc-CCCCCCHH
Confidence 666789999999988533 33332 34567889999985 456667777788899997654 66554543
No 105
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.54 E-value=0.00014 Score=83.97 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=65.8
Q ss_pred CeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEE-EEECCHHHHHHHHhcCCCceEE-EecCCCHH
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVL-VASLYLKDAEEVIEGIPNAEAV-QLDVSDHK 651 (1053)
Q Consensus 575 ~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~-v~~r~~~~a~~l~~~~~~~~~~-~~d~~d~~ 651 (1053)
++|+|+|+ |++|+.+++.|.+++. .++. +++++....+.+.+.++..... ..++.+ .
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-------------------~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~-~ 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-------------------VEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEP-I 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-------------------ceEEEEeccchhcCCChHHhCccccccCCceeec-C
Confidence 47999996 9999999999998763 3555 5454443333344444432211 111211 1
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
+..+++.++|+|+.|+|...+..++..++++|+++||.|
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS 99 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLAAGVKVIDLS 99 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHhCCCEEEeCC
Confidence 223444589999999999999999999999999999998
No 106
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.53 E-value=0.0006 Score=78.44 Aligned_cols=76 Identities=12% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCC-CHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS-DHK 651 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~-d~~ 651 (1053)
+|+|+|.| +|++|+.+++.|.+.++ .+|...+|+.++...+.. .++++++.+|++ +.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-------------------~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~~~~~ 60 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-------------------WEVYGMDMQTDRLGDLVN-HPRMHFFEGDITINKE 60 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-------------------CeEEEEeCcHHHHHHhcc-CCCeEEEeCCCCCCHH
Confidence 46899999 59999999999987642 378888887665544432 235788899997 677
Q ss_pred HHHHhhccccEEEecCCc
Q 001559 652 SLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~ 669 (1053)
.+.++++++|+||+++..
T Consensus 61 ~~~~~~~~~d~ViH~aa~ 78 (347)
T PRK11908 61 WIEYHVKKCDVILPLVAI 78 (347)
T ss_pred HHHHHHcCCCEEEECccc
Confidence 788888999999998753
No 107
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.52 E-value=0.00066 Score=78.16 Aligned_cols=156 Identities=20% Similarity=0.159 Sum_probs=90.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC----------HHHHHHHHhcCCCceEEE
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----------LKDAEEVIEGIPNAEAVQ 644 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----------~~~a~~l~~~~~~~~~~~ 644 (1053)
.+|.|+|+|.||+.+++.|.++.. .+..+++.++. -+.|++++ .+++.+..+.........
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~----~l~~~~G~~l~-----VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~ 73 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSR----VFKERYGVELK-----VVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWG 73 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHH----HHHHHcCCCEE-----EEEEEeCCccccCCCCCChHHHHHhhhccCchhhcc
Confidence 689999999999999999877421 01111111111 35667754 222222222221111110
Q ss_pred ecCC-CHHHHHHhh--ccccEEEecCCccccHHHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 645 LDVS-DHKSLCKCI--SQVEIVISLLPASCHVMVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 645 ~d~~-d~~~l~~~i--~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
-+.. ..-++.+++ .++|+||++++...+..+...|++.|+|+|..+- ......+|.+.|+++|+.+..+.++.-|
T Consensus 74 ~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~G 153 (336)
T PRK08374 74 NDYEVYNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAG 153 (336)
T ss_pred ccccccCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEecccccc
Confidence 0000 001344555 3699999999876667788899999999998862 2234457888899999999977766545
Q ss_pred HHHHHHHHHHHHhhhccCceEEEE
Q 001559 720 IDHMMAMKMINHAHVRKGKIKSFT 743 (1053)
Q Consensus 720 i~~mla~~~i~~~~~~~~~v~sf~ 743 (1053)
+.-+-. +++.. .+++|.+|+
T Consensus 154 iPii~~---l~~~l-~g~~i~~i~ 173 (336)
T PRK08374 154 TPIIGL---LRENL-LGDTVKRIE 173 (336)
T ss_pred CCchHH---HHhhc-cccceEEEE
Confidence 443321 22221 455666665
No 108
>PRK06046 alanine dehydrogenase; Validated
Probab=97.51 E-value=0.00028 Score=80.93 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~ 648 (1053)
....+|.|||+|.+|+..++.|.....+ ..|.|++|+.++++++++.+. ++.+...
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i------------------~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~--- 185 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDL------------------EEVRVYDRTKSSAEKFVERMSSVVGCDVTVA--- 185 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCc------------------eEEEEECCCHHHHHHHHHHHHhhcCceEEEe---
Confidence 3467899999999999999999765433 379999999999999887653 1222222
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEe
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
++++++++ +|+|++|||... +-+....++.|+|+.-+....|.+++++.+.-+....++.
T Consensus 186 --~~~~~~l~-aDiVv~aTps~~-P~~~~~~l~~g~hV~~iGs~~p~~~El~~~~~~~a~vvvD 245 (326)
T PRK06046 186 --EDIEEACD-CDILVTTTPSRK-PVVKAEWIKEGTHINAIGADAPGKQELDPEILLRAKVVVD 245 (326)
T ss_pred --CCHHHHhh-CCEEEEecCCCC-cEecHHHcCCCCEEEecCCCCCccccCCHHHHhCCcEEEC
Confidence 23455665 999999999743 3334556899999888876566667776554444433443
No 109
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.50 E-value=0.00096 Score=71.85 Aligned_cols=99 Identities=22% Similarity=0.237 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC------------------HHHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY------------------LKDAEEV 633 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~------------------~~~a~~l 633 (1053)
.+..+|+|+|+|++|..++.+|++.| + -+++++|.+ ..|++.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~G-v------------------g~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a 86 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSG-V------------------GNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEAL 86 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEeccccccccEeehhhCCChHHHHH
Confidence 45788999999999999999999988 3 145555554 1244333
Q ss_pred H----hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCcccc-HHHHHHHHHh-CCeEEEe
Q 001559 634 I----EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASCH-VMVANACIEF-KKHLVTA 689 (1053)
Q Consensus 634 ~----~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~-g~~~vD~ 689 (1053)
+ +..|.+++...+.. +.+.+.+.++++|+||+|+..... ..+...|.+. ++.++..
T Consensus 87 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 87 KENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred HHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 3 33455544333321 345666788889999999754322 3345556665 6665554
No 110
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=97.50 E-value=0.00081 Score=76.89 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC--CCceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI--PNAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~--~~~~~~~~d~~d 649 (1053)
++++|+|.| +|++|+.+++.|++.+. ..+|.+.+|+..+..++...+ +++.++.+|++|
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~------------------~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d 64 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYN------------------PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRD 64 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCC------------------CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCC
Confidence 357899999 79999999999998752 137888898876655444433 357788999999
Q ss_pred HHHHHHhhccccEEEecCCc
Q 001559 650 HKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.+.+.++++++|+||+++..
T Consensus 65 ~~~l~~~~~~iD~Vih~Ag~ 84 (324)
T TIGR03589 65 KERLTRALRGVDYVVHAAAL 84 (324)
T ss_pred HHHHHHHHhcCCEEEECccc
Confidence 99999999999999999864
No 111
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.49 E-value=0.0008 Score=79.09 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=63.4
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH------HHHhcCCCceEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE------EVIEGIPNAEAV 643 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~------~l~~~~~~~~~~ 643 (1053)
..++++|+|+| +|++|+.+++.|.+.| .+|.+++|+..+.+ ++....++++.+
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G--------------------~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v 116 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRG--------------------YNVVAVAREKSGIRGKNGKEDTKKELPGAEVV 116 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEEechhhccccchhhHHhhhcCCceEE
Confidence 45678999999 6999999999999887 37888999875432 222334578899
Q ss_pred EecCCCHHHHHHhhc----cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS----QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~----~~DvVI~~~p~ 669 (1053)
.+|++|.+.+.++++ ++|+||+|+..
T Consensus 117 ~~Dl~d~~~l~~~~~~~~~~~D~Vi~~aa~ 146 (390)
T PLN02657 117 FGDVTDADSLRKVLFSEGDPVDVVVSCLAS 146 (390)
T ss_pred EeeCCCHHHHHHHHHHhCCCCcEEEECCcc
Confidence 999999999998887 58999998753
No 112
>PRK08328 hypothetical protein; Provisional
Probab=97.48 E-value=0.00092 Score=72.98 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--------------------HH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--------------------DA- 630 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--------------------~a- 630 (1053)
.+..+|+|+|+|++|.+++..|++.| + -+++++|.+.- ++
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~G-v------------------g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~ 85 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAG-V------------------GRILLIDEQTPELSNLNRQILHWEEDLGKNPKPL 85 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEEcCCccChhhhccccccChhhcCchHHHH
Confidence 45788999999999999999999998 3 14555554311 11
Q ss_pred ---HHHHhcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 631 ---EEVIEGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 631 ---~~l~~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
+++.+..|.+.+...... +.+++.++++++|+||+|+.... ...+.+.|.+.+++++..+
T Consensus 86 ~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~ 150 (231)
T PRK08328 86 SAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGA 150 (231)
T ss_pred HHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 122233454443322211 34455666777777777775421 2334455667777666653
No 113
>PRK07411 hypothetical protein; Validated
Probab=97.48 E-value=0.00067 Score=79.63 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEEE-E-C--CHHHH----HHHHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLVA-S-L--YLKDA----EEVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v~-~-r--~~~~a----~~l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|+..| +. ...++|+. ++.+|+.-.+. + . ...|+ +++.+..|.+++
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~G-vg----~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v 110 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAG-IG----RIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQV 110 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcC-CC----EEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeE
Confidence 56789999999999999999999988 31 11222222 33333322221 0 0 11133 344444566555
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
...+.. +.+...++++++|+||+|+... ....+.+.|.+.++.+|..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 160 (390)
T PRK07411 111 DLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGS 160 (390)
T ss_pred EEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 444322 4456678899999999999654 34567789999999988764
No 114
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.48 E-value=0.00031 Score=80.55 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d 649 (1053)
...+++.|||+|.+|+..++.|...... .+|.|++|+.++++++++.+.+ +++..+
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~------------------~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~---- 183 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDL------------------EEVSVYCRTPSTREKFALRASDYEVPVRAA---- 183 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCC------------------CEEEEECCCHHHHHHHHHHHHhhCCcEEEe----
Confidence 3457899999999999998888664322 4899999999999988876532 222222
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcC
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAG 707 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~G 707 (1053)
++..++++++|+|+.|||.. .+.+....++.|+|+.-+....+.+++++...-++.
T Consensus 184 -~~~~eav~~aDiVitaT~s~-~P~~~~~~l~~g~~v~~vGs~~p~~~Eld~~~l~~a 239 (325)
T TIGR02371 184 -TDPREAVEGCDILVTTTPSR-KPVVKADWVSEGTHINAIGADAPGKQELDPEILKNA 239 (325)
T ss_pred -CCHHHHhccCCEEEEecCCC-CcEecHHHcCCCCEEEecCCCCcccccCCHHHHhcC
Confidence 34567788999999999863 233345678999998888765666667665544433
No 115
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.47 E-value=0.0011 Score=66.74 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=64.3
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHHHH--
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEEVI-- 634 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~l~-- 634 (1053)
+|+|+|+|++|..+++.|++.| + -+++++|.+ ..|++.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v------------------~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~ 61 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-V------------------GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARR 61 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-C------------------CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHH
Confidence 5899999999999999999988 3 256666543 12333333
Q ss_pred --hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeec
Q 001559 635 --EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 635 --~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy 691 (1053)
+..|.+++...+.. +.....+.++++|+||+|+.... ...+.+.|.+.++++++...
T Consensus 62 l~~~~p~v~i~~~~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 62 LNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred HHHHCCCcEEEEEeeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 33455554333322 22334577788999999986532 24567788888888888764
No 116
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.47 E-value=0.00062 Score=76.91 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=78.1
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.+||+|.+|.++++.|.+.| .+|.+++|++. ++++.+. . +.. ..+..
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G--------------------~~v~v~~~~~~-~~~~~~~-g-~~~-------~~s~~ 50 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG--------------------HQLHVTTIGPV-ADELLSL-G-AVS-------VETAR 50 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--------------------CeEEEEeCCHh-HHHHHHc-C-Cee-------cCCHH
Confidence 36999999999999999999887 37889999874 5555432 1 211 12344
Q ss_pred HhhccccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 655 KCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
++.+++|+||.|+|..-. ..+. ...+..|+.++|+|..++ .++++.+.++++|+.++.
T Consensus 51 ~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 51 QVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred HHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 567899999999996532 1221 112456889999997665 456798999999998877
No 117
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=97.45 E-value=0.0021 Score=71.40 Aligned_cols=100 Identities=22% Similarity=0.233 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~- 631 (1053)
.+..+|+|+|+|++|..+++.|++.| + -+++++|.+ ..|++
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~G-V------------------g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTG-I------------------GAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEV 88 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcC-C------------------CEEEEEeCCEecccccccccccChhhcChHHHHH
Confidence 46789999999999999999999988 3 144444433 12333
Q ss_pred ---HHHhcCCCceEEEecCC-CHHHHHHhhc-cccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVS-DHKSLCKCIS-QVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~-d~~~l~~~i~-~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+.. +.+.+.+++. ++|+||+|.... ....+.+.|.+.+..++.+.
T Consensus 89 ~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 89 MAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred HHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 33344566555444322 4556666664 699999998642 33456778888888887764
No 118
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.45 E-value=0.00036 Score=79.12 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=81.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC---ceEEEecCCC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN---AEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~---~~~~~~d~~d 649 (1053)
..+++.|||+|..|+..++.+..-.++ .+|.|++|+.++++++++.+.. +++..+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i------------------~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~---- 173 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNP------------------KRIRVYSRNFDHARAFAERFSKEFGVDIRPV---- 173 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCC------------------CEEEEECCCHHHHHHHHHHHHHhcCCcEEEe----
Confidence 468899999999999999998875433 3899999999999998877542 233322
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHH
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKG 705 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~ 705 (1053)
+++.+++.++|||+.+||.. .+-+-...+++|+|+.-+....|.+++++...-+
T Consensus 174 -~~~~eav~~aDIV~taT~s~-~P~~~~~~l~pg~hV~aiGs~~p~~~El~~~~l~ 227 (301)
T PRK06407 174 -DNAEAALRDADTITSITNSD-TPIFNRKYLGDEYHVNLAGSNYPNRREAEHSVLN 227 (301)
T ss_pred -CCHHHHHhcCCEEEEecCCC-CcEecHHHcCCCceEEecCCCCCCcccCCHHHHH
Confidence 44778889999999999854 2333455789999988876555666677654333
No 119
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=97.44 E-value=0.00095 Score=77.78 Aligned_cols=100 Identities=23% Similarity=0.207 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE 632 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~ 632 (1053)
.+..+|+|+|+|++|..++.+|+..| + -+++++|.+ ..|++.
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~G-v------------------g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~ 99 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAG-V------------------GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEV 99 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEEeCCEEccccccccccCChhHCCCHHHHH
Confidence 45788999999999999999999988 3 144444443 234443
Q ss_pred HH----hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 633 VI----EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 633 l~----~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
++ +..|.+++...+.. +.+.+.++++++|+||+|+...- ...+.+.|.+.++.+|..+
T Consensus 100 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~ 163 (370)
T PRK05600 100 AAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGT 163 (370)
T ss_pred HHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 33 34465544333321 45667789999999999997543 3456788999999988775
No 120
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.43 E-value=0.00062 Score=76.27 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=66.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-HHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-EVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
.+|.|||+|.+|+..+..+.+...+ .-+.|+++++++.. +.++.+. +.... .+.+.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~------------------elvaV~d~d~es~~la~A~~~G-i~~~~---~~~e~l 59 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHL------------------EMVAMVGIDPESDGLARARELG-VKTSA---EGVDGL 59 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCc------------------EEEEEEeCCcccHHHHHHHHCC-CCEEE---CCHHHH
Confidence 5899999999999887777665422 14678898877543 4455443 22221 123333
Q ss_pred HHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.+. .+.|+|+.+||...|...+..|+++|+|++|.+
T Consensus 60 l~~-~dIDaV~iaTp~~~H~e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 60 LAN-PDIDIVFDATSAKAHARHARLLAELGKIVIDLT 95 (285)
T ss_pred hcC-CCCCEEEECCCcHHHHHHHHHHHHcCCEEEECC
Confidence 221 368999999999999999999999999999987
No 121
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.43 E-value=0.0021 Score=70.05 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~- 631 (1053)
.+..+|+|+|+|++|+.+++.|++.| + -+++++|.+ ..|++
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~G-V------------------g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~ 69 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSG-V------------------GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEV 69 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEECCCEECchhhcchhCcChhhCCCcHHHH
Confidence 45688999999999999999999998 3 144444432 12333
Q ss_pred ---HHHhcCCCceEEEecCC-CHHHHHHhhc-cccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVS-DHKSLCKCIS-QVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~-d~~~l~~~i~-~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+.. +.+++.+++. ++|+||+|+.... ...+.+.|.+.+..++...
T Consensus 70 ~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~ 134 (231)
T cd00755 70 MAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSM 134 (231)
T ss_pred HHHHHHHHCCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 33344565555444322 3455666664 5899999975432 2446677888888777654
No 122
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.43 E-value=0.0019 Score=73.94 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=76.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccE-EEEEECCHHH-------HHHHHhcCCCceEEEec
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKD-------AEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~-------a~~l~~~~~~~~~~~~d 646 (1053)
++|.|+|+|.+|+.+++.|.+.... .++.. +++ |.|++++... .+++.+...+-.....+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~------~~~g~------~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~ 68 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDD------RRNNN------GISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEID 68 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHh------HhcCC------CeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCC
Confidence 4799999999999999999774210 00011 123 5667765311 11221111100000111
Q ss_pred CC--CHHHHHHhhccccEEEecCCccc----cHHHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCCeEEecCCC
Q 001559 647 VS--DHKSLCKCISQVEIVISLLPASC----HVMVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 647 ~~--d~~~l~~~i~~~DvVI~~~p~~~----~~~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv~~l~g~G~ 716 (1053)
.. +.+.+.+ .++|+||.|+|... .......+++.|+|+|.++= ......+|.+.|++.|+.+..+.-+
T Consensus 69 ~~~~~~~~ll~--~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV 144 (326)
T PRK06392 69 YEKIKFDEIFE--IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATV 144 (326)
T ss_pred CCcCCHHHHhc--CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeee
Confidence 11 2333322 37899999998532 13445889999999999972 2334568888999999999876543
No 123
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=97.42 E-value=0.00088 Score=78.77 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEEE-E---CCHHHHHH----HHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLVA-S---LYLKDAEE----VIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v~-~---r~~~~a~~----l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|+..| +. ...++|++ ++.+|+.-.+. . .-..|++. +.+..|.+++
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~G-vg----~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i 114 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAG-VG----TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNV 114 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcC-CC----eEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEE
Confidence 45789999999999999999999988 31 11233332 44444432221 1 11224433 3344566555
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
...+.. +.+.+.++++++|+||+|+.... ...+.+.|.+.++.+|..+
T Consensus 115 ~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 115 RLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred EEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 433222 44566788999999999986432 3457788999999988764
No 124
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.41 E-value=0.00054 Score=75.20 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=63.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+++|+.+..+++...++ ++.++++|++|.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~ 60 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG--------------------WRVGAYDINEAGLAALAAELGAGNAWTGALDVTDR 60 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCH
Confidence 46799999 7999999999999987 378999999998888877654 477889999998
Q ss_pred HHHHHhhcc--------ccEEEecCCcc
Q 001559 651 KSLCKCISQ--------VEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~--------~DvVI~~~p~~ 670 (1053)
+++.+++.+ .|+||++++..
T Consensus 61 ~~v~~~~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 61 AAWDAALADFAAATGGRLDVLFNNAGIL 88 (260)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 888766553 59999998753
No 125
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.40 E-value=0.00084 Score=79.74 Aligned_cols=95 Identities=28% Similarity=0.299 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|.+|+.++.+|...| + .+|.+++|+.+++++++..++. .++ +.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G-~------------------~~V~v~~r~~~ra~~la~~~g~-~~~-----~~~ 234 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKG-V------------------RKITVANRTLERAEELAEEFGG-EAI-----PLD 234 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCC-C------------------CeEEEEeCCHHHHHHHHHHcCC-cEe-----eHH
Confidence 45689999999999999999998876 2 2799999999999999887752 222 335
Q ss_pred HHHHhhccccEEEecCCccc---cHHHHHHHHH----hCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASC---HVMVANACIE----FKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~----~g~~~vD~sy 691 (1053)
++.+.+.++|+||+|||..- .....+.++. .+..++|++.
T Consensus 235 ~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 235 ELPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred HHHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 66778889999999997542 2333333332 2356899974
No 126
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.40 E-value=0.0033 Score=60.41 Aligned_cols=108 Identities=27% Similarity=0.282 Sum_probs=76.4
Q ss_pred EEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHH-
Q 001559 577 VLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCK- 655 (1053)
Q Consensus 577 VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~- 655 (1053)
|+|+|+|.+|+.+++.|.+.+ .+|.++++++++++++.+.. +.++..|.+|.+.|.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--------------------~~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--------------------IDVVVIDRDPERVEELREEG--VEVIYGDATDPEVLERA 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--------------------SEEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHhCC--------------------CEEEEEECCcHHHHHHHhcc--cccccccchhhhHHhhc
Confidence 689999999999999999854 48999999999999888764 7899999999999884
Q ss_pred hhccccEEEecCCcccc-HHHHHHHHH--hCCeEEEeeccChhHHHHHHHHHHcCCeE
Q 001559 656 CISQVEIVISLLPASCH-VMVANACIE--FKKHLVTASYIDDSMSKLDEKAKGAGITI 710 (1053)
Q Consensus 656 ~i~~~DvVI~~~p~~~~-~~v~~aci~--~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~ 710 (1053)
-++++|.||.+++-... ..++..+-+ ...+++-....+... +..++.|+..
T Consensus 59 ~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~----~~l~~~g~d~ 112 (116)
T PF02254_consen 59 GIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPENA----ELLRQAGADH 112 (116)
T ss_dssp TGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHH----HHHHHTT-SE
T ss_pred CccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHCCcCE
Confidence 58899999999985432 233333333 234555555544333 3445666643
No 127
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.38 E-value=0.0014 Score=68.52 Aligned_cols=94 Identities=22% Similarity=0.254 Sum_probs=56.5
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH------------------HHHHHHH---
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL------------------KDAEEVI--- 634 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~------------------~~a~~l~--- 634 (1053)
+|+|+|+|++|..++.+|++.| + -+++++|.+. .|++.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-v------------------g~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l 61 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-V------------------GNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENL 61 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHH
Confidence 5899999999999999999988 3 1456655543 2333332
Q ss_pred -hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCcccc-HHHHHHHHHh-CCeEEE
Q 001559 635 -EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASCH-VMVANACIEF-KKHLVT 688 (1053)
Q Consensus 635 -~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~-g~~~vD 688 (1053)
+..|.+++...+.. +.+.+.+.++++|+||+|+..... ..+...|.+. ++.++.
T Consensus 62 ~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~ 119 (174)
T cd01487 62 REINPFVKIEAINIKIDENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVC 119 (174)
T ss_pred HHHCCCCEEEEEEeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 33455444333221 445667788889999988654221 2233444444 444443
No 128
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.38 E-value=0.00062 Score=75.33 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=66.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|+++++.|.+.+ +. ...+.+.+|+.++++++.+.++++... .+..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g-~~----------------~~~i~v~~r~~~~~~~l~~~~~~~~~~-------~~~~ 56 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSP-AD----------------VSEIIVSPRNAQIAARLAERFPKVRIA-------KDNQ 56 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCC-CC----------------hheEEEECCCHHHHHHHHHHcCCceEe-------CCHH
Confidence 47999999999999999998876 20 125789999999999888876533321 2234
Q ss_pred HhhccccEEEecCCccccHHHHHHH-HHhCCeEEEee
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC-IEFKKHLVTAS 690 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac-i~~g~~~vD~s 690 (1053)
++++++|+||-|+|+.....+.... +..++++++++
T Consensus 57 ~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis~~ 93 (258)
T PRK06476 57 AVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVISVI 93 (258)
T ss_pred HHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEEEC
Confidence 5567899999999975444544332 35678888876
No 129
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.37 E-value=0.0015 Score=75.64 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=88.1
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE-EE-EECCHHHHHHHHhcCCCceEEEecCC--
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV-LV-ASLYLKDAEEVIEGIPNAEAVQLDVS-- 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v-~v-~~r~~~~a~~l~~~~~~~~~~~~d~~-- 648 (1053)
+++|.|+| +|.+|+..+..+.+.++ ..+| .+ ++++.+++.+.++.+.---+...|-.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~------------------~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~ 62 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPD------------------RFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAA 62 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCcc------------------ccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHH
Confidence 47899999 89999999999877652 1233 33 48899999888887642112212211
Q ss_pred ----------------CHHHHHHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCC
Q 001559 649 ----------------DHKSLCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGI 708 (1053)
Q Consensus 649 ----------------d~~~l~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv 708 (1053)
..+.+.++++ ++|+||++++...+.....+|+++|+++....= ....-..+.+.|++.|+
T Consensus 63 ~~l~~~l~~~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~ 142 (385)
T PRK05447 63 KELKEALAAAGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGA 142 (385)
T ss_pred HHHHHhhccCCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCC
Confidence 1334555554 479999999988787778889999999888641 11223456678899999
Q ss_pred eEEecCCCChhHHHH
Q 001559 709 TILGEMGLDPGIDHM 723 (1053)
Q Consensus 709 ~~l~g~G~dPGi~~m 723 (1053)
.+++ +|+.-+-+
T Consensus 143 ~i~P---VDSEh~ai 154 (385)
T PRK05447 143 QILP---VDSEHSAI 154 (385)
T ss_pred eEEE---ECHHHHHH
Confidence 9988 46644433
No 130
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.35 E-value=0.00056 Score=78.82 Aligned_cols=108 Identities=9% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d~ 650 (1053)
...+++|||+|..|+..++.+..-.+. .+|.|++|++++++++++.+.. +++..+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i------------------~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~----- 184 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGI------------------EEIRLYDIDPAATAKLARNLAGPGLRIVAC----- 184 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCc------------------eEEEEEeCCHHHHHHHHHHHHhcCCcEEEe-----
Confidence 457899999999999999888764423 4899999999999998877652 333322
Q ss_pred HHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEeeccChhHHHHHHHH
Q 001559 651 KSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTASYIDDSMSKLDEKA 703 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~sy~~~~~~~L~~~A 703 (1053)
+++.++++++|+|+.+||..-. +-+-...++.|+|+.-+....+.+++++...
T Consensus 185 ~~~~~av~~ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 185 RSVAEAVEGADIITTVTADKTNATILTDDMVEPGMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred CCHHHHHhcCCEEEEecCCCCCCceecHHHcCCCcEEEecCCCCCCcccCCHHH
Confidence 3477889999999999974332 2234468899999877765566677776554
No 131
>PLN02214 cinnamoyl-CoA reductase
Probab=97.34 E-value=0.0014 Score=75.55 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHH-----HHhcCCCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE-----VIEGIPNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~-----l~~~~~~~~~~~~ 645 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.+..|+.++... +....++++++.+
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERG--------------------YTVKGTVRNPDDPKNTHLRELEGGKERLILCKA 67 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc--------------------CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEec
Confidence 4568899999 5999999999999987 378888887654321 1111124677889
Q ss_pred cCCCHHHHHHhhccccEEEecCCcc
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
|++|.+.+.++++++|+||++++..
T Consensus 68 Dl~d~~~~~~~~~~~d~Vih~A~~~ 92 (342)
T PLN02214 68 DLQDYEALKAAIDGCDGVFHTASPV 92 (342)
T ss_pred CcCChHHHHHHHhcCCEEEEecCCC
Confidence 9999999999999999999999653
No 132
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.34 E-value=0.00095 Score=75.14 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=68.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH-HHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD-AEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~-a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
++.||.|||+|.+|...+..+.+...+ .-+.+++++++. ..+.++.+. +... ..+.+
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~v------------------elvAVvdid~es~gla~A~~~G-i~~~---~~~ie 60 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHL------------------EPGAMVGIDPESDGLARARRLG-VATS---AEGID 60 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCc------------------EEEEEEeCChhhHHHHHHHHcC-CCcc---cCCHH
Confidence 357899999999999988877765422 146689998764 334455442 2211 11334
Q ss_pred HHHHh--hccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 652 SLCKC--ISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~--i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.|.+. ..+.|+|+.+||...|...+..++++|+|++|.+
T Consensus 61 ~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 61 GLLAMPEFDDIDIVFDATSAGAHVRHAAKLREAGIRAIDLT 101 (302)
T ss_pred HHHhCcCCCCCCEEEECCCHHHHHHHHHHHHHcCCeEEECC
Confidence 44332 2579999999999999999999999999999997
No 133
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.34 E-value=0.0016 Score=74.07 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=74.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
.++|+|||+|.+|..++..|.+.+. ..+|.+++|+.++++.+.+. . +... . ..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~------------------~~~V~~~dr~~~~~~~a~~~-g-~~~~---~--~~~~ 60 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL------------------AGEIVGADRSAETRARAREL-G-LGDR---V--TTSA 60 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC------------------CcEEEEEECCHHHHHHHHhC-C-CCce---e--cCCH
Confidence 4689999999999999999988762 13799999998877765432 2 1100 1 1224
Q ss_pred HHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEeeccChhHH-HHHHHHHHcCCeEEecC
Q 001559 654 CKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTASYIDDSMS-KLDEKAKGAGITILGEM 714 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~sy~~~~~~-~L~~~Ak~~Gv~~l~g~ 714 (1053)
.+.++++|+||.|+|......+... ++..+..++|++....... .+. .....++.++.+.
T Consensus 61 ~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~-~~~~~~~~~v~~h 124 (307)
T PRK07502 61 AEAVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMA-PHLPEGVHFIPGH 124 (307)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHH-HhCCCCCeEEeCC
Confidence 5567899999999998765444433 4566788888876543322 222 1122455666653
No 134
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.34 E-value=0.00022 Score=69.10 Aligned_cols=108 Identities=23% Similarity=0.258 Sum_probs=66.0
Q ss_pred cCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC--HHHHHHHHhcCCCceEEEecCCCHHHHHHhhc
Q 001559 581 GAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY--LKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658 (1053)
Q Consensus 581 GaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~--~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~ 658 (1053)
|+|.+|+.+++.|.+.... .++ .-+.|++|+ .... .....++.... .++.+++.
T Consensus 1 G~G~VG~~l~~~l~~~~~~----------~~~-----~v~~v~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~ 56 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER----------IDL-----EVVGVADRSMLISKD--WAASFPDEAFT-------TDLEELID 56 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH----------CEE-----EEEEEEESSEEEETT--HHHHHTHSCEE-------SSHHHHHT
T ss_pred CCCHHHHHHHHHHHhCccc----------CCE-----EEEEEEECCchhhhh--hhhhccccccc-------CCHHHHhc
Confidence 8999999999999876410 000 146778888 1111 11111111111 22345555
Q ss_pred --cccEEEecCCccccHHHHHHHHHhCCeEEEeec--cC--hhHHHHHHHHHHcCCeEEe
Q 001559 659 --QVEIVISLLPASCHVMVANACIEFKKHLVTASY--ID--DSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 659 --~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy--~~--~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
+.|+||+|++..........+++.|+|+|.++- .. ....+|.+.|++.|+.+.-
T Consensus 57 ~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 57 DPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred CcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence 799999998876666778899999999999973 22 4456888999999988763
No 135
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.33 E-value=0.0007 Score=77.19 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=81.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d~ 650 (1053)
..++++|||+|..|+..++.+....+. .+|.|++|++++++++++...+ +.+..+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i------------------~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~----- 183 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDC------------------RQLWVWGRSETALEEYRQYAQALGFAVNTT----- 183 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCC------------------CEEEEECCCHHHHHHHHHHHHhcCCcEEEE-----
Confidence 467899999999999999998765433 4899999999999988876542 333322
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHc
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGA 706 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~ 706 (1053)
++..++++++|+|+.||+... +-+-...++.|+|+.-+....+.+++++...-+.
T Consensus 184 ~~~~~av~~ADIV~taT~s~~-P~~~~~~l~~G~hi~~iGs~~p~~~Eld~~~l~~ 238 (315)
T PRK06823 184 LDAAEVAHAANLIVTTTPSRE-PLLQAEDIQPGTHITAVGADSPGKQELDAELVAR 238 (315)
T ss_pred CCHHHHhcCCCEEEEecCCCC-ceeCHHHcCCCcEEEecCCCCcccccCCHHHHhh
Confidence 346788899999999998542 3333457899999888876566777776554333
No 136
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0011 Score=75.22 Aligned_cols=155 Identities=21% Similarity=0.175 Sum_probs=91.6
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCccccc-ccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQK-TCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+..+|.|+|.|.+|+.+++.|.++.. |+ .+...+++ -+.|++|+....+. ...+++....-|.+...
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~-----~l~~~~g~~i~-----v~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 69 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQE-----ELRKRAGIEIR-----VVAVADRDGSLVRD--LDLLNAEVWTTDGALSL 69 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHH-----HHHhhcCCceE-----EEEEEeccchhccc--ccccchhhheecccccc
Confidence 35689999999999999999987652 11 01111111 35567776544330 11111111111211110
Q ss_pred -HHHHhhccccEEEecCCcccc--H--HHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCCeEEecCCCChhHHHHH
Q 001559 652 -SLCKCISQVEIVISLLPASCH--V--MVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGITILGEMGLDPGIDHMM 724 (1053)
Q Consensus 652 -~l~~~i~~~DvVI~~~p~~~~--~--~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~ml 724 (1053)
...-...++|+||+++|.... . .....++++|+|+|+..= ....-.+|.+.|+++|+.+.-++-+.-|+.-+-
T Consensus 70 ~~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~ 149 (333)
T COG0460 70 GDEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIK 149 (333)
T ss_pred cHhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHH
Confidence 111233468999999987432 3 566789999999999862 334456888999999999998866555544332
Q ss_pred HHHHHHHhhhccCceEEEE
Q 001559 725 AMKMINHAHVRKGKIKSFT 743 (1053)
Q Consensus 725 a~~~i~~~~~~~~~v~sf~ 743 (1053)
+ +++.. .+++|.+|.
T Consensus 150 ~---lr~~l-~g~~I~~i~ 164 (333)
T COG0460 150 L---LRELL-AGDEILSIR 164 (333)
T ss_pred H---HHhhc-ccCceEEEE
Confidence 2 22222 256676665
No 137
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.32 E-value=0.0009 Score=77.20 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=69.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-Cc--------e-E-
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NA--------E-A- 642 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~--------~-~- 642 (1053)
+.||.|+|+|++|+.+++.+.+++++ .-+.+.+++++.+..++...+ .. . +
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~------------------eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~ 62 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDM------------------ELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFE 62 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCc------------------EEEEEECCChHHHHHHHHhcCCCccccCcccccccc
Confidence 46899999999999999998876533 146667777766666655321 00 0 0
Q ss_pred -EEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 643 -VQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 643 -~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
..+.+. ..+.+++.++|+||+|+|...+......|+++|+.+|+-+.
T Consensus 63 ~~~i~V~--~~~~el~~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 63 EAGIPVA--GTIEDLLEKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred CCceEEc--CChhHhhccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 001111 22455667899999999999999999999999999999874
No 138
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=97.32 E-value=0.00085 Score=77.44 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=65.5
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEec
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLD 646 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d 646 (1053)
....++|+|.| +|++|+.++++|++.| .+|.+++|+.++.+.+...+ ++++.+.+|
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 66 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRG--------------------YTVHATLRDPAKSLHLLSKWKEGDRLRLFRAD 66 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCChHHHHHHHHhhccCCeEEEEECC
Confidence 35678999999 7999999999999987 37888889887766655443 347788899
Q ss_pred CCCHHHHHHhhccccEEEecCCc
Q 001559 647 VSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++|.+.+.++++++|+||+++..
T Consensus 67 l~~~~~~~~~~~~~d~Vih~A~~ 89 (353)
T PLN02896 67 LQEEGSFDEAVKGCDGVFHVAAS 89 (353)
T ss_pred CCCHHHHHHHHcCCCEEEECCcc
Confidence 99999999999999999999864
No 139
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=97.32 E-value=0.0011 Score=76.45 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH----HHHHHhc-----CCCce
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD----AEEVIEG-----IPNAE 641 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~----a~~l~~~-----~~~~~ 641 (1053)
.++++|+|.| +|++|+.++++|.+.+ .+|.+++|.... ...+... ..++.
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g--------------------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN--------------------QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFI 72 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC--------------------CEEEEEeCCCCcchhhhhhhhhccccccCCceE
Confidence 4578999999 6999999999999887 378888875332 1111111 12466
Q ss_pred EEEecCCCHHHHHHhhccccEEEecCCc
Q 001559 642 AVQLDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 642 ~~~~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.+.+|+.|.+.+.++++++|+||+++..
T Consensus 73 ~~~~Di~d~~~l~~~~~~~d~ViHlAa~ 100 (348)
T PRK15181 73 FIQGDIRKFTDCQKACKNVDYVLHQAAL 100 (348)
T ss_pred EEEccCCCHHHHHHHhhCCCEEEECccc
Confidence 7889999999999999999999999853
No 140
>PRK06196 oxidoreductase; Provisional
Probab=97.32 E-value=0.00086 Score=76.21 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=64.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.+.|+|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+.++..+.+|++|.+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G--------------------~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~ 84 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAG--------------------AHVIVPARRPDVAREALAGIDGVEVVMLDLADLE 84 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHH
Confidence 457899999 6999999999999987 3789999999988887776666788999999998
Q ss_pred HHHHhhc-------cccEEEecCCc
Q 001559 652 SLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++.+++. ..|+||++++.
T Consensus 85 ~v~~~~~~~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 85 SVRAFAERFLDSGRRIDILINNAGV 109 (315)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCC
Confidence 8776653 47999999875
No 141
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.32 E-value=0.00032 Score=80.34 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
..++++|+|+|+ |.+|+.+++.|+....+ .++.+++|+.++++++...+.. .+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv------------------~~lilv~R~~~rl~~La~el~~-----~~--- 205 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV------------------AELLLVARQQERLQELQAELGG-----GK--- 205 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC------------------CEEEEEcCCHHHHHHHHHHhcc-----cc---
Confidence 356789999997 99999999999754212 3789999999999988876542 12
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
...+.+.+.++|+||+++.......+-..-++.+..++|+++
T Consensus 206 i~~l~~~l~~aDiVv~~ts~~~~~~I~~~~l~~~~~viDiAv 247 (340)
T PRK14982 206 ILSLEEALPEADIVVWVASMPKGVEIDPETLKKPCLMIDGGY 247 (340)
T ss_pred HHhHHHHHccCCEEEECCcCCcCCcCCHHHhCCCeEEEEecC
Confidence 234678889999999999653322222334567788999986
No 142
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=97.31 E-value=0.0017 Score=72.88 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=63.8
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccc-cccCCCccEE-EEEECC-----HHHH----HHHHhcCCCceEEE
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMET-DFEWQNDIRV-LVASLY-----LKDA----EEVIEGIPNAEAVQ 644 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~v-~v~~r~-----~~~a----~~l~~~~~~~~~~~ 644 (1053)
+|+|+|+|++|..+|++|+..| +. ...+.| |.++.+|..- .+...+ ..|+ +++.+.+|.+++..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG-Vg----~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG-VR----HITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CC----eEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 5999999999999999999988 31 112222 2233333321 121111 1233 33334456554432
Q ss_pred ec--C----------------CCHHHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEe
Q 001559 645 LD--V----------------SDHKSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTA 689 (1053)
Q Consensus 645 ~d--~----------------~d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~ 689 (1053)
.. + .+.+.+.++++++|+|++|+...-. .-+...|.+.++.+++.
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a 139 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA 139 (307)
T ss_pred eeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 22 1 2566788999999999999965432 33455677777766664
No 143
>PRK07680 late competence protein ComER; Validated
Probab=97.31 E-value=0.00092 Score=74.65 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=67.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.+++..|.+.+.+ ....|.+++|+.++++++.+.++++... .+..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~----------------~~~~v~v~~r~~~~~~~~~~~~~g~~~~-------~~~~ 57 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAV----------------KPSQLTITNRTPAKAYHIKERYPGIHVA-------KTIE 57 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC----------------CcceEEEECCCHHHHHHHHHHcCCeEEE-------CCHH
Confidence 4699999999999999999887621 0126899999999988887765443321 1233
Q ss_pred HhhccccEEEecCCccccHHHHHHH---HHhCCeEEEeec
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTASY 691 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~sy 691 (1053)
+.+.++|+||-|+|+.....+.+.. +..++.+++++-
T Consensus 58 ~~~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~a 97 (273)
T PRK07680 58 EVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITS 97 (273)
T ss_pred HHHHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECC
Confidence 5567899999999876655555443 345678888874
No 144
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.30 E-value=0.0017 Score=77.08 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|.+|+.++.+|...| + .+|++++|+.++++++++.++. ..+ +.+
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G-~------------------~~V~v~~rs~~ra~~la~~~g~-~~i-----~~~ 232 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKG-V------------------GKILIANRTYERAEDLAKELGG-EAV-----KFE 232 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCC-C------------------CEEEEEeCCHHHHHHHHHHcCC-eEe-----eHH
Confidence 45688999999999999999998876 2 3799999999999988887653 222 235
Q ss_pred HHHHhhccccEEEecCCccc---cHHHHHHHHHh---CCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASC---HVMVANACIEF---KKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~~---g~~~vD~sy 691 (1053)
++.+.+.++|+||+||+..- .....+.+... ...++|++.
T Consensus 233 ~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 233 DLEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred HHHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 67788899999999997542 23334444332 236889973
No 145
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.30 E-value=9.1e-05 Score=84.42 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=70.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d~ 650 (1053)
...++.|||+|..|+..++.|....+. .+|.|++|+.++++++++.+.. +.+..+
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i------------------~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~----- 183 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPI------------------KEVRVYSRSPERAEAFAARLRDLGVPVVAV----- 183 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--------------------SEEEEE-SSHHHHHHHHHHHHCCCTCEEEE-----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCc------------------eEEEEEccChhHHHHHHHhhccccccceec-----
Confidence 356899999999999999998765423 4899999999999999876543 334333
Q ss_pred HHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcC
Q 001559 651 KSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAG 707 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~G 707 (1053)
++++++++++|+|+.|||.... +-+....++.|+|+.-+....+.+++|+...-+.-
T Consensus 184 ~~~~~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~~iGs~~~~~~El~~~~~~~a 241 (313)
T PF02423_consen 184 DSAEEAVRGADIIVTATPSTTPAPVFDAEWLKPGTHINAIGSYTPGMRELDDELLKRA 241 (313)
T ss_dssp SSHHHHHTTSSEEEE----SSEEESB-GGGS-TT-EEEE-S-SSTTBESB-HHHHHCS
T ss_pred cchhhhcccCCEEEEccCCCCCCccccHHHcCCCcEEEEecCCCCchhhcCHHHhccC
Confidence 4467889999999999987552 33344578999999988766666666655444443
No 146
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.29 E-value=0.0011 Score=76.06 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=76.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC------CceEEEecC
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~d~ 647 (1053)
+++|.|||+|.+|.+++..|++.| .+|.+++|+.++++.+..... +... ...+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G--------------------~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~-~~~~ 62 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKG--------------------VPVRLWARRPEFAAALAAERENREYLPGVAL-PAEL 62 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHhCcccccCCCCcC-CCCe
Confidence 578999999999999999999887 379999999988887765321 1110 0001
Q ss_pred CCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec-cChh---HHHHHHHHHH---cCCeEEe
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY-IDDS---MSKLDEKAKG---AGITILG 712 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy-~~~~---~~~L~~~Ak~---~Gv~~l~ 712 (1053)
....++.+.++++|+||-++|......+. ..++.+..+++++- ..+. ...+.+...+ .++.++.
T Consensus 63 ~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~-~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~ 133 (328)
T PRK14618 63 YPTADPEEALAGADFAVVAVPSKALRETL-AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS 133 (328)
T ss_pred EEeCCHHHHHcCCCEEEEECchHHHHHHH-HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE
Confidence 11124556678999999999987544443 33456778888764 3322 3445444444 5555444
No 147
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.27 E-value=0.00061 Score=69.78 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=65.8
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEE-EecCC
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAV-QLDVS 648 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~-~~d~~ 648 (1053)
||.|||+|.+|.++|..|++.+ .+|.++.|+.+.++.+.+.. ++.+.- .+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--------------------~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~- 59 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--------------------HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA- 59 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--------------------EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcC--------------------CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-
Confidence 6999999999999999999987 48999999999888887543 221110 0111
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHH---HHhCCeEEEee
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTAS 690 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~s 690 (1053)
..++.+.++++|+||-++|...+..+.+.. ++.++.++-++
T Consensus 60 -t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 60 -TTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp -ESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred -ccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 245778899999999999998887776654 45666666554
No 148
>PRK07825 short chain dehydrogenase; Provisional
Probab=97.27 E-value=0.00097 Score=73.80 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=64.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+.++..+.+|++|.++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~ 64 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALG--------------------ARVAIGDLDEALAKETAAELGLVVGGPLDVTDPAS 64 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHhccceEEEccCCCHHH
Confidence 57899999 6999999999999987 37899999999988887766667888999999888
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++++ ..|++|++++..
T Consensus 65 ~~~~~~~~~~~~~~id~li~~ag~~ 89 (273)
T PRK07825 65 FAAFLDAVEADLGPIDVLVNNAGVM 89 (273)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcC
Confidence 765544 469999998753
No 149
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.27 E-value=0.0007 Score=70.22 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcCchh-hHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIGAGRV-CRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~v-g~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
+.+.++|+|+|+|.+ |..++.+|.+.+ ..|++++|+.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g--------------------~~V~v~~r~~---------------------- 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRN--------------------ATVTVCHSKT---------------------- 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCC--------------------CEEEEEECCc----------------------
Confidence 467899999999985 999999999887 3799999862
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
+++.+.+.++|+||++++... .+-..-++.+..++|++.
T Consensus 79 -~~l~~~l~~aDiVIsat~~~~--ii~~~~~~~~~viIDla~ 117 (168)
T cd01080 79 -KNLKEHTKQADIVIVAVGKPG--LVKGDMVKPGAVVIDVGI 117 (168)
T ss_pred -hhHHHHHhhCCEEEEcCCCCc--eecHHHccCCeEEEEccC
Confidence 346678899999999998643 233345677888999975
No 150
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.26 E-value=0.00048 Score=68.10 Aligned_cols=110 Identities=24% Similarity=0.156 Sum_probs=67.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
...+|.|||+|++|..++++|.+.| + .-+.|.+|+.+.+++++..++...+ .+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag-~------------------~v~~v~srs~~sa~~a~~~~~~~~~--------~~ 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG-H------------------EVVGVYSRSPASAERAAAFIGAGAI--------LD 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT-S------------------EEEEESSCHH-HHHHHHC--TT-------------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC-C------------------eEEEEEeCCcccccccccccccccc--------cc
Confidence 4689999999999999999999887 3 2356778998888888877764332 23
Q ss_pred HHHhhccccEEEecCCccccHHHHHHH-----HHhCCeEEEeeccChhHHHHHHHHHHcCCeEE
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANAC-----IEFKKHLVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~ac-----i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l 711 (1053)
+.+.+.++|+++-++|-..-..+++.. .+.|+.++-+|.-- .. ++.+-++++|+.+.
T Consensus 62 ~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~-~~-~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 62 LEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGAL-GS-DVLAPARERGAIVA 123 (127)
T ss_dssp TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS---G-GGGHHHHHTT-EEE
T ss_pred cccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECCCCC-hH-HhhhhHHHCCCeEE
Confidence 456788999999999987555555543 34688888888531 11 22346677777543
No 151
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=97.25 E-value=0.0018 Score=78.96 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccc-cccCCCccE-EEEEECC------HHHH----HHHHhcCCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMET-DFEWQNDIR-VLVASLY------LKDA----EEVIEGIPN 639 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~-v~v~~r~------~~~a----~~l~~~~~~ 639 (1053)
.+..+|+|+|+|+.|.++|++|+..| +. ...++| |.++.+|.. ..+.... ..|+ +++.+-+|.
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~G-Vg----~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~ 410 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWG-VR----HITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPS 410 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcC-CC----eEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCC
Confidence 46789999999999999999999998 31 011222 223322322 2122110 1122 333444676
Q ss_pred ceEEEe--cC-------C---------CHHHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEee
Q 001559 640 AEAVQL--DV-------S---------DHKSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 640 ~~~~~~--d~-------~---------d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~s 690 (1053)
+++... .+ + |.+.+.++++++|+|++|+...-. .-+...|...++.+|..+
T Consensus 411 v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA 480 (664)
T TIGR01381 411 IQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA 480 (664)
T ss_pred cEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 554322 21 1 225688899999999999976543 345678999999988764
No 152
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.25 E-value=0.0015 Score=71.56 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=64.5
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc-EEEEEEC-CHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI-RVLVASL-YLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~v~v~~r-~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.+||.|||+|.+|++++..|.+.+.. +. .+.+++| +.++++++.+.++ +... .
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-------~ 58 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKE-----------------YIEEIIVSNRSNVEKLDQLQARYN-VSTT-------T 58 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCC-----------------CcCeEEEECCCCHHHHHHHHHHcC-cEEe-------C
Confidence 47899999999999999999876511 12 3777887 5788888877653 2211 2
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHH--hCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIE--FKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~--~g~~~vD~s 690 (1053)
+..++++++|+||.++|+..+..+.+.... .++.++.++
T Consensus 59 ~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~ 99 (245)
T PRK07634 59 DWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVA 99 (245)
T ss_pred ChHHHHhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEEC
Confidence 234567889999999999888776654321 245566664
No 153
>PRK06182 short chain dehydrogenase; Validated
Probab=97.24 E-value=0.0014 Score=72.55 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=62.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++... ++..+.+|++|.++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G--------------------~~V~~~~r~~~~l~~~~~~--~~~~~~~Dv~~~~~ 60 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQG--------------------YTVYGAARRVDKMEDLASL--GVHPLSLDVTDEAS 60 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHhC--CCeEEEeeCCCHHH
Confidence 56899999 6999999999999887 3789999999888776543 47888999999988
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++++ +.|+||++++..
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcC
Confidence 887776 579999999754
No 154
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.0013 Score=70.74 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVSD 649 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~d 649 (1053)
+++|+|+| +|++|+.++++|++.| .+|.+++|+.++++++.+.+ .++..+.+|++|
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEG--------------------YKVAITARDQKELEEAAAELNNKGNVLGLAADVRD 65 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC--------------------CEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC
Confidence 47899999 6999999999999886 37899999998877776554 457788899999
Q ss_pred HHHHHHhhc-------cccEEEecCCc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+++.+.++ .+|+||+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 66 EADVQRAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 988876665 58999999854
No 155
>PLN02858 fructose-bisphosphate aldolase
Probab=97.23 E-value=0.0014 Score=87.69 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=84.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
..+|.+||.|.||.++|..|++.| ..|.++||++++++++.+. ++.. .++.
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G--------------------~~v~v~dr~~~~~~~l~~~--Ga~~-------~~s~ 54 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSG--------------------FKVQAFEISTPLMEKFCEL--GGHR-------CDSP 54 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCC--------------------CeEEEEcCCHHHHHHHHHc--CCee-------cCCH
Confidence 467999999999999999999987 3899999999999998874 2221 1345
Q ss_pred HHhhccccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcC--CeEEe
Q 001559 654 CKCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAG--ITILG 712 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~G--v~~l~ 712 (1053)
.++.+++|+||.|+|..-. ..+. ...++.|..++|+|.+++ .++++.+.++++| +.++.
T Consensus 55 ~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD 123 (1378)
T PLN02858 55 AEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD 123 (1378)
T ss_pred HHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 6778899999999987643 2222 123467889999997655 4568888899999 66554
No 156
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.22 E-value=0.00092 Score=70.94 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=65.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHH-HHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDA-EEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a-~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+|++.|+|+|.+|..+++.|++.+ .+|.|.+|+.+++ +.+++.+. ..+ ...+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag--------------------~eV~igs~r~~~~~~a~a~~l~-~~i------~~~~ 53 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG--------------------HEVIIGSSRGPKALAAAAAALG-PLI------TGGS 53 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC--------------------CeEEEecCCChhHHHHHHHhhc-ccc------ccCC
Confidence 578999999999999999999987 3899996665544 44444332 111 1123
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHH--HhCCeEEEeec
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACI--EFKKHLVTASY 691 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci--~~g~~~vD~sy 691 (1053)
..+..+.+|+|+-++|+...+.++.+.. -.|+.+||.+-
T Consensus 54 ~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tn 94 (211)
T COG2085 54 NEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATN 94 (211)
T ss_pred hHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCC
Confidence 4567778999999999988777765543 23799999863
No 157
>PRK14852 hypothetical protein; Provisional
Probab=97.21 E-value=0.0022 Score=81.64 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEE-EEC---CHHHHH----HHHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLV-ASL---YLKDAE----EVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v-~~r---~~~~a~----~l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|+..| +. ..++.|++ ++.+|+.-.+ ++. -..|++ ++.+-.|.+++
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAraG-VG----~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I 404 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLARTG-IG----NFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDI 404 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHHcC-CC----eEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeE
Confidence 56789999999999999999999998 31 12233322 3333332211 111 122333 33344566555
Q ss_pred EEecC-CCHHHHHHhhccccEEEecCCccc---cHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDV-SDHKSLCKCISQVEIVISLLPASC---HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~-~d~~~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~~g~~~vD~s 690 (1053)
...+. -+.+.+.++++++|+||+|+.... ...+...|.+.|+.+|..+
T Consensus 405 ~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag 456 (989)
T PRK14852 405 RSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAG 456 (989)
T ss_pred EEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEee
Confidence 44422 256778899999999999997632 2456778999999999764
No 158
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.21 E-value=0.0014 Score=72.01 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=63.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSD 649 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d 649 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.++ ++..+.+|++|
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 61 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG--------------------ATLGLVARRTDALQAFAARLPKAARVSVYAADVRD 61 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC
Confidence 46799999 7999999999999987 379999999988887776554 46788999999
Q ss_pred HHHHHHhhcc-------ccEEEecCCc
Q 001559 650 HKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
.+++.+++++ .|++|++++.
T Consensus 62 ~~~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 62 ADALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 9888776654 6999999864
No 159
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.20 E-value=0.0013 Score=74.07 Aligned_cols=78 Identities=26% Similarity=0.284 Sum_probs=63.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
..++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ ..+..+.+|+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G--------------------~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl 98 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRG--------------------ATVVAVARREDLLDAVADRITRAGGDAMAVPCDL 98 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 457899999 6999999999999987 38999999998887776543 2356788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 99 ~d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 99 SDLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 99988877766 679999998754
No 160
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00062 Score=77.62 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=88.2
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
....+.|||+|..++..++++...-+. .+|.|.+|+++.+++++..+.+--.. ++...++
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~------------------~~I~i~~r~~~~~e~~a~~l~~~~~~--~v~a~~s 188 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDI------------------REIRVYSRDPEAAEAFAARLRKRGGE--AVGAADS 188 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCc------------------cEEEEEcCCHHHHHHHHHHHHhhcCc--cceeccC
Confidence 357899999999999999999876533 38999999999999998665421110 2233456
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcC-CeEEe
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAG-ITILG 712 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~G-v~~l~ 712 (1053)
++++++++|+|+.|||... +-+...-++.|+|+.-+.-..|.+.+|+.+.-.+- ..++.
T Consensus 189 ~~~av~~aDiIvt~T~s~~-Pil~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD 248 (330)
T COG2423 189 AEEAVEGADIVVTATPSTE-PVLKAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVD 248 (330)
T ss_pred HHHHhhcCCEEEEecCCCC-CeecHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEc
Confidence 7899999999999998754 44455678999998888766777778876655444 55554
No 161
>PRK06101 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.0016 Score=70.76 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=61.7
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+...++..+.+|++|.+++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 61 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQG--------------------WQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGT 61 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHH
Confidence 5689999 7999999999999987 379999999998888877656678899999999998
Q ss_pred HHhhcc----ccEEEecCC
Q 001559 654 CKCISQ----VEIVISLLP 668 (1053)
Q Consensus 654 ~~~i~~----~DvVI~~~p 668 (1053)
.+++++ .|++|+.++
T Consensus 62 ~~~~~~~~~~~d~~i~~ag 80 (240)
T PRK06101 62 KAALSQLPFIPELWIFNAG 80 (240)
T ss_pred HHHHHhcccCCCEEEEcCc
Confidence 888775 367776654
No 162
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.18 E-value=0.0014 Score=72.27 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=63.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+. ++.++++|++|.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~ 64 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAG--------------------ARVAIVDIDADNGAAVAASLGERARFIATDITDD 64 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCH
Confidence 457899999 6999999999999987 389999999888888776654 467889999999
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|++|++++.
T Consensus 65 ~~~~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 65 AAIERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 88877665 36999999864
No 163
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.18 E-value=0.0016 Score=70.97 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=62.1
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~ 652 (1053)
|+|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++...++ ++..+.+|++|.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG--------------------HKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHH
Confidence 5799999 6999999999999887 379999999998887766543 46788899999888
Q ss_pred HHHhhc-------cccEEEecCCc
Q 001559 653 LCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~ 669 (1053)
+.+.++ +.|+||++++.
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag~ 84 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAGL 84 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 776554 58999999865
No 164
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=97.18 E-value=0.0029 Score=67.40 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~- 631 (1053)
.+.++|+|+|+|++|..+++.|+..| + -+++++|.+ ..|++
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~G-V------------------g~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a 79 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSG-I------------------GSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcC-C------------------CEEEEEECCcccHhhCCCCccccHHHcCchHHHH
Confidence 45789999999999999999999998 3 245555543 11333
Q ss_pred ---HHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+..-.+...+.++++|+||++++.. ....+.+.|.+.+++++...
T Consensus 80 ~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 80 SLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred HHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 344455665543332211123456788999999998542 33567788999999988875
No 165
>PRK05884 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0016 Score=70.29 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=61.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ ++..+.+|++|.+++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~-~~~~~~~D~~~~~~v 59 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG--------------------HKVTLVGARRDDLEVAAKEL-DVDAIVCDNTDPASL 59 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHhc-cCcEEecCCCCHHHH
Confidence 4699998 6999999999999887 37899999999888877665 367788999999888
Q ss_pred HHhhc----cccEEEecCCc
Q 001559 654 CKCIS----QVEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~----~~DvVI~~~p~ 669 (1053)
.++++ ..|++||+++.
T Consensus 60 ~~~~~~~~~~id~lv~~ag~ 79 (223)
T PRK05884 60 EEARGLFPHHLDTIVNVPAP 79 (223)
T ss_pred HHHHHHHhhcCcEEEECCCc
Confidence 77665 47999998763
No 166
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.17 E-value=0.0024 Score=71.33 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=68.1
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
+|+|+| +|.+|+.++++|.+.+ .+|.+..|+.+++. .++++.+.+|..|.+.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g--------------------~~V~~~~R~~~~~~-----~~~~~~~~~d~~d~~~l~ 55 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS--------------------VPFLVASRSSSSSA-----GPNEKHVKFDWLDEDTWD 55 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC--------------------CcEEEEeCCCcccc-----CCCCccccccCCCHHHHH
Confidence 489999 6999999999999887 37999999987543 235677788999999999
Q ss_pred Hhh------cc-ccEEEecCCcccc-----HHHHHHHHHhCC-eEEEee
Q 001559 655 KCI------SQ-VEIVISLLPASCH-----VMVANACIEFKK-HLVTAS 690 (1053)
Q Consensus 655 ~~i------~~-~DvVI~~~p~~~~-----~~v~~aci~~g~-~~vD~s 690 (1053)
+++ ++ +|.|+.+.|.... ..++++|.++|+ ++|-+|
T Consensus 56 ~a~~~~~~~~g~~d~v~~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~S 104 (285)
T TIGR03649 56 NPFSSDDGMEPEISAVYLVAPPIPDLAPPMIKFIDFARSKGVRRFVLLS 104 (285)
T ss_pred HHHhcccCcCCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCEEEEee
Confidence 888 56 9999988875321 245566677774 555554
No 167
>PRK08219 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0015 Score=69.64 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=63.3
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++. + +|.+.+|+.++++++.+..++++++.+|++|.++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~-------------------~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~ 61 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--H-------------------TLLLGGRPAERLDELAAELPGATPFPVDLTDPEA 61 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--C-------------------CEEEEeCCHHHHHHHHHHhccceEEecCCCCHHH
Confidence 46899999 699999999999876 3 6899999988877776656668889999999999
Q ss_pred HHHhhc---cccEEEecCCc
Q 001559 653 LCKCIS---QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i~---~~DvVI~~~p~ 669 (1053)
+.++++ +.|+||++++.
T Consensus 62 ~~~~~~~~~~id~vi~~ag~ 81 (227)
T PRK08219 62 IAAAVEQLGRLDVLVHNAGV 81 (227)
T ss_pred HHHHHHhcCCCCEEEECCCc
Confidence 988877 48999999864
No 168
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.17 E-value=0.002 Score=69.85 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=67.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
.|-++|-| +.++|.++|+.|++.| .+|.++.|+.+++++++..++ .+.++.+|++|.
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G--------------------~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~ 65 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAG--------------------AKVVLAARREERLEALADEIGAGAALALALDVTDR 65 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCC--------------------CeEEEEeccHHHHHHHHHhhccCceEEEeeccCCH
Confidence 45677779 6899999999999998 489999999999999999998 478899999999
Q ss_pred HHHHHhhc-------cccEEEecCCccccHH
Q 001559 651 KSLCKCIS-------QVEIVISLLPASCHVM 674 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~~~~~~ 674 (1053)
+++.++++ +.|++||-++.....+
T Consensus 66 ~~~~~~i~~~~~~~g~iDiLvNNAGl~~g~~ 96 (246)
T COG4221 66 AAVEAAIEALPEEFGRIDILVNNAGLALGDP 96 (246)
T ss_pred HHHHHHHHHHHHhhCcccEEEecCCCCcCCh
Confidence 88655544 5899999998655433
No 169
>PRK07454 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0015 Score=70.72 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=62.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+.+++.|+++| .+|.+++|+.++.+++.+.+ .++..+.+|+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 64 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG--------------------WDLALVARSQDALEALAAELRSTGVKAAAYSIDL 64 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccC
Confidence 467899999 6999999999999987 37999999988777665432 2467788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 65 SNPEAIAPGIAELLEQFGCPDVLINNAGMA 94 (241)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 99888776655 379999998753
No 170
>PLN02253 xanthoxin dehydrogenase
Probab=97.16 E-value=0.0017 Score=72.09 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~ 648 (1053)
++++++|.| +|++|+++++.|++.| .+|.+++|+.+..+++.+.+. ++..+.+|++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 76 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHG--------------------AKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVT 76 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecC
Confidence 457899998 7999999999999987 378999998877777665542 4678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|+||++++.
T Consensus 77 d~~~~~~~~~~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 77 VEDDVSRAVDFTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 9988887766 57999999864
No 171
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=97.16 E-value=0.0013 Score=73.48 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=70.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----CHHHHHHHH----hcCCCceE
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----YLKDAEEVI----EGIPNAEA 642 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----~~~~a~~l~----~~~~~~~~ 642 (1053)
..+...|+|+|+|+.|.+++.||+..| +. .+--+--|.+|.+|.+-.|+-- ...+|+..+ ...+.+++
T Consensus 63 ~Lk~s~VLVVGaGGLGcPa~~YLaaaG-vG---~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v 138 (427)
T KOG2017|consen 63 SLKNSSVLVVGAGGLGCPAAQYLAAAG-VG---RLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEV 138 (427)
T ss_pred ccCCccEEEEccCCCCCHHHHHHHHcC-CC---eecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCcee
Confidence 456788999999999999999999887 31 0000001112222222111100 012333222 22344554
Q ss_pred EEecC-CCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDV-SDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~-~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
..-.. .+...+-++++++|+|.+||... ....+...|.-.|+.+|..|
T Consensus 139 ~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgS 188 (427)
T KOG2017|consen 139 QTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGS 188 (427)
T ss_pred eechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccc
Confidence 33322 25677789999999999999643 44677889999999999875
No 172
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.0017 Score=71.11 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~ 648 (1053)
.+.++++|.| .|++|+.+++.|+++| .+|.+++|+.+..+++.+..++ +..+.+|++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~ 68 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAG--------------------ARVHVCDVSEAALAATAARLPGAKVTATVADVA 68 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHhcCceEEEEccCC
Confidence 4568999999 6999999999999987 3799999998888777766554 477889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ ++|+||++++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 69 DPAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 9988776654 579999998643
No 173
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=97.15 E-value=0.0039 Score=66.50 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccE-EEEEEC-----CHHHHH----HHHhcCCCc
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIR-VLVASL-----YLKDAE----EVIEGIPNA 640 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~-v~v~~r-----~~~~a~----~l~~~~~~~ 640 (1053)
.+..+|+|+|+|++|..+++.|+..| +. .-.++|+. ++.++.. -..... -..|++ ++.+..|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~G-Vg----~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v 91 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAG-ID----SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNV 91 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcC-CC----EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCC
Confidence 45789999999999999999999988 31 01111111 2222221 111111 011333 344445666
Q ss_pred eEEEec--CC-CHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 641 EAVQLD--VS-DHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 641 ~~~~~d--~~-d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
++...+ .. ..+...+.++++|+||+|+... ....+.+.|.+.+..++..+
T Consensus 92 ~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 92 KLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred EEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 554443 22 1345567788999999998543 23456788999999988875
No 174
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.15 E-value=0.0029 Score=75.43 Aligned_cols=112 Identities=20% Similarity=0.249 Sum_probs=77.3
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|+| +|.+|..++..|.+.| .+|.+++|+.+++++++..+. +.. ..++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G--------------------~~V~v~~r~~~~~~~~a~~~g-v~~-------~~~~ 52 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG--------------------FEVIVTGRDPKKGKEVAKELG-VEY-------ANDN 52 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC--------------------CEEEEEECChHHHHHHHHHcC-Cee-------ccCH
Confidence 5799998 8999999999999877 379999999888777666543 221 1234
Q ss_pred HHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEeeccChhH-HHHHHHHHHcCCeEEecCC
Q 001559 654 CKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTASYIDDSM-SKLDEKAKGAGITILGEMG 715 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~sy~~~~~-~~L~~~Ak~~Gv~~l~g~G 715 (1053)
.+.++++|+||.|+|......+... .+..++.++|++-..... ..+. +....|+.++.+.-
T Consensus 53 ~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~-~~~~~~~~~V~~HP 117 (437)
T PRK08655 53 IDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAME-EYAPEGVEILPTHP 117 (437)
T ss_pred HHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHH-HhcCCCCEEEEcCC
Confidence 5667899999999998654444433 345788899998654333 3333 22334667776543
No 175
>PRK06194 hypothetical protein; Provisional
Probab=97.14 E-value=0.0012 Score=73.67 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=62.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+++|+.+.++++.+.+ .++..+.+|+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 64 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALG--------------------MKLVLADVQQDALDRAVAELRAQGAEVLGVRTDV 64 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC--------------------CEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 357899999 7999999999999987 37899999987776665443 2356688999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++++ .|+||++++..
T Consensus 65 ~d~~~~~~~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 65 SDAAQVEALADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 999888877764 69999998753
No 176
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.14 E-value=0.0013 Score=71.22 Aligned_cols=77 Identities=26% Similarity=0.301 Sum_probs=63.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~ 648 (1053)
+.++++|+| +|++|+.+++.|++.| .+|.+++|+.++.+++...+. ++..+.+|++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEG--------------------ARVVVTDRNEEAAERVAAEILAGGRAIAVAADVS 63 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 457899999 6999999999999887 379999999988777665542 3668899999
Q ss_pred CHHHHHHhhcc-------ccEEEecCCc
Q 001559 649 DHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
|.+++..++++ .|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 64 DEADVEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 99988877654 5999999865
No 177
>PRK14851 hypothetical protein; Provisional
Probab=97.14 E-value=0.0026 Score=79.36 Aligned_cols=113 Identities=14% Similarity=0.035 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCccccccccccc-ccCCCccEEEE-EEC---CHHHHHHH----HhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETD-FEWQNDIRVLV-ASL---YLKDAEEV----IEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~-~~~~~~~~v~v-~~r---~~~~a~~l----~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|++.| +. . ..+.|+ .++.+|+.-.+ +.. -..|++.+ .+-.|.+++
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~G-VG--~--l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I 115 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTG-IG--R--FHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEI 115 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhC-CC--e--EEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeE
Confidence 56789999999999999999999998 31 1 123332 23333332211 111 12244333 334565544
Q ss_pred EE--ecCCCHHHHHHhhccccEEEecCCcc-c--cHHHHHHHHHhCCeEEEee
Q 001559 643 VQ--LDVSDHKSLCKCISQVEIVISLLPAS-C--HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~--~d~~d~~~l~~~i~~~DvVI~~~p~~-~--~~~v~~aci~~g~~~vD~s 690 (1053)
.. ..+ +.+++.++++++|+||+|+... + ...+...|.+.++.+|+..
T Consensus 116 ~~~~~~i-~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 116 TPFPAGI-NADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred EEEecCC-ChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 33 334 5667889999999999999753 2 2457788999999999864
No 178
>PRK07877 hypothetical protein; Provisional
Probab=97.14 E-value=0.0024 Score=79.90 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEEEE---CCHHHHHH----HHhcCCCceEE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLVAS---LYLKDAEE----VIEGIPNAEAV 643 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v~~---r~~~~a~~----l~~~~~~~~~~ 643 (1053)
.+..+|+|+|+| +|.+++.+|++.|.+. ...++|.+ ++.+|++-.++. ....|++. +.+-.|.+++.
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG----~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~ 179 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCG----ELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVE 179 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCC----eEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEE
Confidence 567899999998 9999999999887211 12333333 444444332221 12234433 33345655554
Q ss_pred EecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 644 QLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 644 ~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
..+.. +.+++.++++++|+||+|+...- ...+.++|.+.|+.+|..+
T Consensus 180 ~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~ 228 (722)
T PRK07877 180 VFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMAT 228 (722)
T ss_pred EEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 44432 57889999999999999998643 3567789999999988765
No 179
>PRK05867 short chain dehydrogenase; Provisional
Probab=97.13 E-value=0.0016 Score=71.12 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~ 67 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG--------------------AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDV 67 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 457899999 6999999999999987 37899999988888776543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|++|++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 68 SQHQQVTSMLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 99888776654 579999998653
No 180
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.12 E-value=0.0017 Score=71.41 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+..+ ++..+.+|++|.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~ 63 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEG--------------------ARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSL 63 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCH
Confidence 357899999 6999999999999987 378999999988888776543 467788999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|++|++++.
T Consensus 64 ~~~~~~~~~~~~~~g~id~li~~Ag~ 89 (262)
T TIGR03325 64 DDHKEAVARCVAAFGKIDCLIPNAGI 89 (262)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 77766554 46999999864
No 181
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=97.12 E-value=0.0018 Score=73.68 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=63.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++.++.+|+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl 64 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG--------------------WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDL 64 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHhhccCCceEEEEecC
Confidence 457899999 7999999999999987 37899999998888776654 2467788999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+|.+++.+++++ .|+|||+++.
T Consensus 65 ~~~~~v~~~~~~~~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 65 GDLDSVRRFVDDFRALGKPLDALVCNAAV 93 (322)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEECCcc
Confidence 999888776653 7999999874
No 182
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.12 E-value=0.0018 Score=73.25 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=74.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHH--HHhcCC----CceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE--VIEGIP----NAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~--l~~~~~----~~~~~~~ 645 (1053)
.+++|+|-| +|++|+.+++.|.++| ..|.-.-|++++-+. .+..++ +.+.+..
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG--------------------Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~a 64 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG--------------------YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKA 64 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC--------------------CEEEEEEcCcchhhhHHHHHhcccCcccceEEec
Confidence 468899999 6999999999999998 378888898876433 233443 4678889
Q ss_pred cCCCHHHHHHhhccccEEEecCCc-ccc----------------HHHHHHHHHhC--CeEEEee
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPA-SCH----------------VMVANACIEFK--KHLVTAS 690 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~-~~~----------------~~v~~aci~~g--~~~vD~s 690 (1053)
|+.|.+++.+.+++||.|++++.+ .+. ..|.++|.+.. +.+|-.|
T Consensus 65 DL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 65 DLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred cccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 999999999999999999999843 221 13567888877 4455443
No 183
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.11 E-value=0.0016 Score=74.27 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=65.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE---E--EecCC
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA---V--QLDVS 648 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~---~--~~d~~ 648 (1053)
|++|.|||+|.+|.+++..|++.+ .+|.+++|+.++++++......... . ...+.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNG--------------------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLR 60 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeE
Confidence 468999999999999999999887 3799999999888887764211000 0 00011
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEee
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTAS 690 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~s 690 (1053)
...++.+.++++|+||-|+|......+... .+..++.+++++
T Consensus 61 ~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 61 ATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred EeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 112345667899999999997543333332 234567778775
No 184
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=97.10 E-value=0.0019 Score=71.07 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.++ ++..+++|++|.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEG--------------------ARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSY 64 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCH
Confidence 457899999 6999999999999987 378999999998888877665 367888999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|++|++++.
T Consensus 65 ~~~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 65 ADNQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 87776654 46999999875
No 185
>PRK05717 oxidoreductase; Validated
Probab=97.10 E-value=0.002 Score=70.56 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=63.3
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCC
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~ 648 (1053)
..++++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+... ++.++.+|++
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEG--------------------WQVVLADLDRERGSKVAKALGENAWFIAMDVA 66 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcC--------------------CEEEEEcCCHHHHHHHHHHcCCceEEEEccCC
Confidence 34568899999 7999999999999987 378889999888777765543 4678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.+++. ..|+||++++..
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~li~~ag~~ 95 (255)
T PRK05717 67 DEAQVAAGVAEVLGQFGRLDALVCNAAIA 95 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 9887755443 369999998653
No 186
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.09 E-value=0.0022 Score=71.14 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=62.8
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~ 652 (1053)
++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+..+ ++.++.+|++|.++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARG--------------------DRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHH
Confidence 5799999 7999999999999987 378999999988887766544 57788999999988
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++++ ..|+||++++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~~ 87 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGYG 87 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 876654 379999998754
No 187
>PRK09186 flagellin modification protein A; Provisional
Probab=97.08 E-value=0.0018 Score=70.54 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=60.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~~ 645 (1053)
++++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+ + .+.++.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG--------------------GIVIAADIDKEALNELLESLGKEFKSKKLSLVEL 62 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEe
Confidence 357899999 6999999999999987 37888999988887765543 1 2445689
Q ss_pred cCCCHHHHHHhhcc-------ccEEEecCC
Q 001559 646 DVSDHKSLCKCISQ-------VEIVISLLP 668 (1053)
Q Consensus 646 d~~d~~~l~~~i~~-------~DvVI~~~p 668 (1053)
|++|.+++.+++++ .|+||+++.
T Consensus 63 Dl~d~~~~~~~~~~~~~~~~~id~vi~~A~ 92 (256)
T PRK09186 63 DITDQESLEEFLSKSAEKYGKIDGAVNCAY 92 (256)
T ss_pred cCCCHHHHHHHHHHHHHHcCCccEEEECCc
Confidence 99999888777764 699999984
No 188
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.0024 Score=71.04 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=63.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~ 651 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++.+.+..+ ++..+.+|++|.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~ 63 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAG--------------------HRVVGTVRSEAARADFEALHPDRALARLLDVTDFD 63 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCc--------------------CEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHH
Confidence 46799999 6999999999999987 379999999988887766543 4677889999998
Q ss_pred HHHHhhc-------cccEEEecCCcc
Q 001559 652 SLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++.++++ ..|+||++++..
T Consensus 64 ~~~~~~~~~~~~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 64 AIDAVVADAEATFGPIDVLVNNAGYG 89 (277)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 8877766 479999998753
No 189
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.07 E-value=0.0017 Score=70.93 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=63.0
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d 646 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.+. ++..+.+|
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAG--------------------AEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence 3467899999 6999999999999987 378999999887776655432 36678889
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
++|.+++.+++++ .|+||++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 68 VTDHDAVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 9999888777654 69999998653
No 190
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.07 E-value=0.0022 Score=70.44 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=61.1
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCCCH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVSDH 650 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~d~ 650 (1053)
|+++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.+ .++..+.+|++|.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~ 60 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG--------------------ARVVISSRNEENLEKALKELKEYGEVYAVKADLSDK 60 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCH
Confidence 5799999 6999999999999987 37999999988777665543 3467789999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 61 ~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 61 DDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 88876664 47999999864
No 191
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.07 E-value=0.0012 Score=69.08 Aligned_cols=90 Identities=30% Similarity=0.243 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|.|+|+|.+|+.+|+.|...| .+|.+++|+.......... .+. .
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG--------------------~~V~~~d~~~~~~~~~~~~--~~~--------~ 82 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFG--------------------MRVIGYDRSPKPEEGADEF--GVE--------Y 82 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT---------------------EEEEEESSCHHHHHHHHT--TEE--------E
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCC--------------------ceeEEecccCChhhhcccc--cce--------e
Confidence 467899999999999999999999887 4899999997765422221 111 2
Q ss_pred HHHHHhhccccEEEecCCcccc-----HHHHHHHHHhCCeEEEee
Q 001559 651 KSLCKCISQVEIVISLLPASCH-----VMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-----~~v~~aci~~g~~~vD~s 690 (1053)
.++.++++++|+|++++|..-. ..-..+.++.|..+|.++
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEecc
Confidence 3578899999999999996421 112233445566666655
No 192
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=97.07 E-value=0.0026 Score=79.91 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=59.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.++++|+|.| +|++|+.+++.|.+.++ .+|.+++|.......+.. .++++.+.+|++|.
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g-------------------~~V~~l~r~~~~~~~~~~-~~~~~~~~gDl~d~ 372 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDN-------------------YEVYGLDIGSDAISRFLG-HPRFHFVEGDISIH 372 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCC-------------------cEEEEEeCCchhhhhhcC-CCceEEEeccccCc
Confidence 5678999999 79999999999997642 388889987654433322 24578888999876
Q ss_pred HH-HHHhhccccEEEecCC
Q 001559 651 KS-LCKCISQVEIVISLLP 668 (1053)
Q Consensus 651 ~~-l~~~i~~~DvVI~~~p 668 (1053)
.. +.++++++|+||+++.
T Consensus 373 ~~~l~~~l~~~D~ViHlAa 391 (660)
T PRK08125 373 SEWIEYHIKKCDVVLPLVA 391 (660)
T ss_pred HHHHHHHhcCCCEEEECcc
Confidence 55 5678889999999875
No 193
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.06 E-value=0.0028 Score=73.03 Aligned_cols=136 Identities=14% Similarity=0.011 Sum_probs=77.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-------HHHhcCCCce-EEEec
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-------EVIEGIPNAE-AVQLD 646 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-------~l~~~~~~~~-~~~~d 646 (1053)
.+|.|+|.|.||+.+++.|.++.. .+..+++.++. -+.|++|+..... ++.+.-.... .....
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~----~l~~~~g~~l~-----v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~ 73 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYL----YINETYGIDLV-----VSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI 73 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHH----HHHHhcCCcEE-----EEEEEecchhhccccCCChhhhhhccccccchhhhh
Confidence 689999999999999999976541 11122222222 2556676543221 1111000000 00000
Q ss_pred CCCHHHHHHhhccccEEEecCCccc-----cHHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 647 VSDHKSLCKCISQVEIVISLLPASC-----HVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~~-----~~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
..+..++...-.+.||||+|||..+ .......+++.|+|+|+.. -......+|.+.|++.|+.+..++-+.-|
T Consensus 74 ~~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggG 153 (346)
T PRK06813 74 EHHPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAA 153 (346)
T ss_pred ccChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeec
Confidence 0011111100015799999998543 2356688999999999986 23345578888999999999977644434
No 194
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.0021 Score=71.46 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=61.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++|+|.| +|++|+++++.|++.| .+|.+++|+.++++++.+. ++..+.+|++|.++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G--------------------~~Vi~~~r~~~~~~~l~~~--~~~~~~~Dl~d~~~ 61 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG--------------------WRVFATCRKEEDVAALEAE--GLEAFQLDYAEPES 61 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHC--CceEEEccCCCHHH
Confidence 46799999 5999999999999887 3899999999888877653 47788999999887
Q ss_pred HHHhhc--------cccEEEecCCcc
Q 001559 653 LCKCIS--------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~--------~~DvVI~~~p~~ 670 (1053)
+.++++ ..|+||++++..
T Consensus 62 ~~~~~~~~~~~~~g~id~li~~Ag~~ 87 (277)
T PRK05993 62 IAALVAQVLELSGGRLDALFNNGAYG 87 (277)
T ss_pred HHHHHHHHHHHcCCCccEEEECCCcC
Confidence 766554 369999998653
No 195
>PLN02858 fructose-bisphosphate aldolase
Probab=97.05 E-value=0.0025 Score=85.37 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+..++|.+||.|.||.+++..|++.| .+|.++||+.++++++.+.. +.. ..
T Consensus 322 ~~~~~IGfIGlG~MG~~mA~~L~~~G--------------------~~V~v~dr~~~~~~~l~~~G--a~~-------~~ 372 (1378)
T PLN02858 322 KPVKRIGFIGLGAMGFGMASHLLKSN--------------------FSVCGYDVYKPTLVRFENAG--GLA-------GN 372 (1378)
T ss_pred cCCCeEEEECchHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHcC--Cee-------cC
Confidence 34588999999999999999999887 38999999999998877642 111 12
Q ss_pred HHHHhhccccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccChh-HHHHHHHHHH--cCCeEEe
Q 001559 652 SLCKCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDDS-MSKLDEKAKG--AGITILG 712 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~~-~~~L~~~Ak~--~Gv~~l~ 712 (1053)
+..++++++|+||.|+|.... ..+. ...+..|..+||+|.+++. ++++.+.+++ +|+.++.
T Consensus 373 s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD 443 (1378)
T PLN02858 373 SPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443 (1378)
T ss_pred CHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 345778899999999995432 2232 1234678999999976654 5678888888 8888765
No 196
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.0023 Score=69.47 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=62.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~ 648 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.+++++..+.+ .++..+.+|++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREG--------------------ARVVVADRDAEAAERVAAAIAAGGRAFARQGDVG 63 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC--------------------CeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 457899999 6999999999999987 37889999988776665543 23678889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.++++ ..|+||++++.
T Consensus 64 ~~~~~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 64 SAEAVEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9988877665 57999999875
No 197
>PRK06153 hypothetical protein; Provisional
Probab=97.03 E-value=0.004 Score=72.02 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccc-cccCCCccEEEE-E-ECC---H--HHHHHHHhcC----CC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMET-DFEWQNDIRVLV-A-SLY---L--KDAEEVIEGI----PN 639 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~v~v-~-~r~---~--~~a~~l~~~~----~~ 639 (1053)
.+..+|+|+|+|++|+.++..|++.| +. ...+.| |.++..|+.-.+ + ..+ . .|++.+.+.+ ++
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~G-Vg----eI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~ 248 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTP-VR----EIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG 248 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcC-CC----EEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe
Confidence 45789999999999999999999998 31 011111 223333332222 1 111 1 3444443322 23
Q ss_pred ceEEEecCCCHHHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEeec
Q 001559 640 AEAVQLDVSDHKSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 640 ~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~sy 691 (1053)
+..+...+ +.+.+. .+.++|+||.|+..... ..+.+.|.+.+..+||+..
T Consensus 249 I~~~~~~I-~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 249 IVPHPEYI-DEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred EEEEeecC-CHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence 44433333 444443 56788888888875433 3344556666666666543
No 198
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.03 E-value=0.0047 Score=73.74 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=68.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|+|+|+|+|.+|+.+++.|.+.+ .+|.+++++.++++++.+.. +++++..|.++...+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g--------------------~~v~vid~~~~~~~~~~~~~-~~~~~~gd~~~~~~l~ 59 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN--------------------NDVTVIDTDEERLRRLQDRL-DVRTVVGNGSSPDVLR 59 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--------------------CcEEEEECCHHHHHHHHhhc-CEEEEEeCCCCHHHHH
Confidence 57999999999999999998876 37899999999988876533 4678889999988898
Q ss_pred Hh-hccccEEEecCCcccc-HHHHHHHHH
Q 001559 655 KC-ISQVEIVISLLPASCH-VMVANACIE 681 (1053)
Q Consensus 655 ~~-i~~~DvVI~~~p~~~~-~~v~~aci~ 681 (1053)
++ +.++|.||.+++.... ..+...|.+
T Consensus 60 ~~~~~~a~~vi~~~~~~~~n~~~~~~~r~ 88 (453)
T PRK09496 60 EAGAEDADLLIAVTDSDETNMVACQIAKS 88 (453)
T ss_pred HcCCCcCCEEEEecCChHHHHHHHHHHHH
Confidence 77 8999999999986433 233344444
No 199
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.0018 Score=70.79 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
..++|+|.| +|++|+.+++.|++.| .+|.+++|+.++.+++.+.+ .++..+.+|+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG--------------------ADVVLAARTAERLDEVAAEIDDLGRRALAVPTDI 63 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCC
Confidence 357899999 6999999999999987 37999999988877766543 2467889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||+++..
T Consensus 64 ~~~~~~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 64 TDEDQCANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEECCcc
Confidence 99888776654 46999999854
No 200
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.03 E-value=0.0023 Score=65.55 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++++|+|+|.+|+.+|+.|...| .+|+|++.++-++-+... .++++
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~G--------------------a~V~V~e~DPi~alqA~~--dGf~v-------- 69 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLG--------------------ARVTVTEIDPIRALQAAM--DGFEV-------- 69 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT---------------------EEEEE-SSHHHHHHHHH--TT-EE--------
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCC--------------------CEEEEEECChHHHHHhhh--cCcEe--------
Confidence 456789999999999999999999887 489999999877644332 22333
Q ss_pred HHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEeeccChh
Q 001559 651 KSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTASYIDDS 695 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~sy~~~~ 695 (1053)
..+.++++.+|++|++|+..-- ..-....++.|+.+.++...+.+
T Consensus 70 ~~~~~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 70 MTLEEALRDADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp E-HHHHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTS
T ss_pred cCHHHHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCcee
Confidence 2467888999999999986421 11223457778777777654433
No 201
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.0023 Score=69.49 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=60.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~~d~ 647 (1053)
+++|+|.| +|++|+.+++.|++.| ..|.+++|+.++.+++.+.+ .++.++.+|+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl 60 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG--------------------ARLYLAARDVERLERLADDLRARGAVAVSTHELDI 60 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC--------------------CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 46899999 7999999999999887 37999999988776655432 3577889999
Q ss_pred CCHHHHHHhhcc----ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ----VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~----~DvVI~~~p~ 669 (1053)
+|.+++.+++.+ .|+||++++.
T Consensus 61 ~~~~~~~~~~~~~~~~~d~vv~~ag~ 86 (243)
T PRK07102 61 LDTASHAAFLDSLPALPDIVLIAVGT 86 (243)
T ss_pred CChHHHHHHHHHHhhcCCEEEECCcC
Confidence 998887766653 5999998864
No 202
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.00 E-value=0.0064 Score=64.96 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g 597 (1053)
.+.++|+|+|+|++|+.++.+|++.|
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~G 44 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAG 44 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcC
Confidence 45789999999999999999999998
No 203
>PRK08339 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.0025 Score=70.52 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~~d 646 (1053)
+.+.++|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 66 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG--------------------ADVILLSRNEENLKKAREKIKSESNVDVSYIVAD 66 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEec
Confidence 457899999 6899999999999988 37999999988887766543 246788999
Q ss_pred CCCHHHHHHhhc------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 67 v~~~~~i~~~~~~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 67 LTKREDLERTVKELKNIGEPDIFFFSTGG 95 (263)
T ss_pred CCCHHHHHHHHHHHHhhCCCcEEEECCCC
Confidence 999988877765 37999998864
No 204
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.0024 Score=70.06 Aligned_cols=77 Identities=23% Similarity=0.273 Sum_probs=62.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC------CceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~ 645 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+. ++..+.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G--------------------~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREG--------------------AAVALADLDAALAERAAAAIARDVAGARVLAVPA 65 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEc
Confidence 457899999 7999999999999987 378999999888877665432 3567889
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.++++ ..|++|++++.
T Consensus 66 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 66 DVTDAASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 9999888877665 57999999875
No 205
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.00 E-value=0.003 Score=70.62 Aligned_cols=93 Identities=12% Similarity=0.093 Sum_probs=66.3
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.+||+|.+|.+++..|.+.+.. ...+|.+.+|+.++++++.+.++ ++. . .+..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~----------------~~~~I~v~~r~~~~~~~l~~~~g-~~~--~-----~~~~ 58 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIV----------------SPDQIICSDLNVSNLKNASDKYG-ITI--T-----TNNN 58 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCC----------------CCceEEEECCCHHHHHHHHHhcC-cEE--e-----CCcH
Confidence 5799999999999999999887621 12369999999999988876553 322 1 1234
Q ss_pred HhhccccEEEecCCccccHHHHHHH---HHhCCeEEEeec
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTASY 691 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~sy 691 (1053)
++++++|+||-|+|+.....+.... ++.++.++|+.-
T Consensus 59 e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~A 98 (272)
T PRK12491 59 EVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAA 98 (272)
T ss_pred HHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCC
Confidence 5677899999999875545544332 445677888763
No 206
>PRK06057 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.0027 Score=69.52 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=61.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
++++|+|+| +|++|+.+++.|++.| .+|.+++|+..+.+++.+.+. ...+.+|++|.+
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~-~~~~~~D~~~~~ 64 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEG--------------------ATVVVGDIDPEAGKAAADEVG-GLFVPTDVTDED 64 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHcC-CcEEEeeCCCHH
Confidence 467899999 5999999999999987 378999999888777766554 357889999988
Q ss_pred HHHHhhc-------cccEEEecCCc
Q 001559 652 SLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~id~vi~~ag~ 89 (255)
T PRK06057 65 AVNALFDTAAETYGSVDIAFNNAGI 89 (255)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 8777665 46999999864
No 207
>PLN02650 dihydroflavonol-4-reductase
Probab=96.99 E-value=0.002 Score=74.28 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=61.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc--C----CCceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG--I----PNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~--~----~~~~~~~~ 645 (1053)
..++|+|.| +|++|+.+++.|++.| .+|.+.+|+.+++..+... . ++++++..
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~ 63 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG--------------------YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKA 63 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC--------------------CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEe
Confidence 357899999 7999999999999987 3788888886655543321 1 23677889
Q ss_pred cCCCHHHHHHhhccccEEEecCCc
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
|++|.+.+.++++++|+||+++..
T Consensus 64 Dl~d~~~~~~~~~~~d~ViH~A~~ 87 (351)
T PLN02650 64 DLAVEGSFDDAIRGCTGVFHVATP 87 (351)
T ss_pred cCCChhhHHHHHhCCCEEEEeCCC
Confidence 999999999999999999999853
No 208
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=96.99 E-value=0.0018 Score=73.61 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=60.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHH---Hhc---CCCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEV---IEG---IPNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l---~~~---~~~~~~~~~d 646 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+..|+..+++.+ ... .++++.+.+|
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRG--------------------YTVKATVRDLTDRKKTEHLLALDGAKERLKLFKAD 64 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEECCCcchHHHHHHHhccCCCCceEEEecC
Confidence 57899999 7999999999999987 3788778876544332 211 1357888899
Q ss_pred CCCHHHHHHhhccccEEEecCCc
Q 001559 647 VSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++|.+.+.++++++|+||+++..
T Consensus 65 l~~~~~~~~~~~~~d~vih~A~~ 87 (322)
T PLN02986 65 LLEESSFEQAIEGCDAVFHTASP 87 (322)
T ss_pred CCCcchHHHHHhCCCEEEEeCCC
Confidence 99999999999999999999864
No 209
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=96.99 E-value=0.0018 Score=73.68 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=60.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHH---hc---CCCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI---EG---IPNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~---~~---~~~~~~~~~d 646 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+..|+.++.++.. .. .++++++.+|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG--------------------YTINATVRDPKDRKKTDHLLALDGAKERLKLFKAD 64 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC--------------------CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCC
Confidence 57899999 6999999999999987 37777778765443321 11 1246788899
Q ss_pred CCCHHHHHHhhccccEEEecCCc
Q 001559 647 VSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++|.+.+.++++++|+||+++..
T Consensus 65 ~~d~~~~~~~~~~~d~vih~A~~ 87 (325)
T PLN02989 65 LLDEGSFELAIDGCETVFHTASP 87 (325)
T ss_pred CCCchHHHHHHcCCCEEEEeCCC
Confidence 99999999999999999999864
No 210
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.99 E-value=0.003 Score=68.84 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=62.3
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++...+ .++..+.+|++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 63 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEG--------------------AKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVT 63 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 47899999 7999999999999887 37899999988877665443 35678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.++++ ..|+||+++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 64 DEEAINAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9988877665 47999999864
No 211
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.99 E-value=0.0021 Score=76.14 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=54.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCc-----e-----EEE
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNA-----E-----AVQ 644 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~-----~-----~~~ 644 (1053)
|+|.|||+|.+|.++|..|++.| .+|.++|++.++.+++.+....+ + .+.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G--------------------~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~ 60 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG--------------------HEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALA 60 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC--------------------CeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhh
Confidence 47999999999999999999887 37999999999998876532110 0 000
Q ss_pred ec-CCCHHHHHHhhccccEEEecCCccc
Q 001559 645 LD-VSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 645 ~d-~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
.. ++-..++.+.++++|+||-|+|...
T Consensus 61 ~g~l~~~~~~~~~~~~advvii~vpt~~ 88 (411)
T TIGR03026 61 AGRLRATTDYEDAIRDADVIIICVPTPL 88 (411)
T ss_pred cCCeEEECCHHHHHhhCCEEEEEeCCCC
Confidence 00 0011234566789999999998754
No 212
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.0035 Score=69.09 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=62.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| +|++|+.+++.|+++| .+|.+++|+.++.+++.+.+ .++.++.+|+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~ 68 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAG--------------------ADVLIAARTESQLDEVAEQIRAAGRRAHVVAADL 68 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 467899999 6899999999999987 38999999988777666543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ +.|+||+++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 69 AHPEATAGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99988876554 57999999864
No 213
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.003 Score=72.55 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=63.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.|+|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+ .++.++.+|+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G--------------------~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv 65 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRG--------------------ARLVLAARDEEALQAVAEECRALGAEVLVVPTDV 65 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 457899999 5999999999999987 37899999999888776543 2356778999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|++||+++..
T Consensus 66 ~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 66 TDADQVKALATQAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 99988877663 579999998753
No 214
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.97 E-value=0.0016 Score=73.75 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=59.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH---HHHhc---CCCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE---EVIEG---IPNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~---~l~~~---~~~~~~~~~d 646 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+..|+.++.. .+... .++++++..|
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRG--------------------YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKAN 63 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCC--------------------CEEEEEEcCCCchhhHHHHHhccCCCCceEEEecc
Confidence 47899999 7999999999999987 37887888754332 22111 2357788899
Q ss_pred CCCHHHHHHhhccccEEEecCCc
Q 001559 647 VSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++|.+.+.++++++|+||++++.
T Consensus 64 l~~~~~~~~~~~~~d~Vih~A~~ 86 (322)
T PLN02662 64 LLEEGSFDSVVDGCEGVFHTASP 86 (322)
T ss_pred ccCcchHHHHHcCCCEEEEeCCc
Confidence 99998999999999999999864
No 215
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.97 E-value=0.0018 Score=63.15 Aligned_cols=96 Identities=21% Similarity=0.161 Sum_probs=61.7
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
||.|+| .|.+|+.++..|.+...+ .-+.+++++.++.+.+....+++.....+..+.+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~------------------~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF------------------EVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc------------------eEEEEEechhhcCcCHHHHCcccccccccccccCChh
Confidence 589999 599999999999886533 1244457665555555544443321111111222333
Q ss_pred HhhccccEEEecCCccccHHH---HHHHHHhCCeEEEeec
Q 001559 655 KCISQVEIVISLLPASCHVMV---ANACIEFKKHLVTASY 691 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v---~~aci~~g~~~vD~sy 691 (1053)
..++|+|+.|+|...+..+ ...+++.|+.++|++.
T Consensus 63 --~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 63 --ELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred --hcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCc
Confidence 2589999999999887654 3445689999999984
No 216
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.0032 Score=68.87 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=62.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 64 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREG--------------------AKVVVGARRQAELDQLVAEIRAEGGEAVALAGDV 64 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 357899999 6999999999999987 37899999988887776543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|++|++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 65 RDEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 99888776665 47999999875
No 217
>PRK08309 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.006 Score=63.89 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=66.4
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCCCHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSDHK 651 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d~~ 651 (1053)
|+++|+|+.+++..+++.|++.| .+|.+++|+.++++.+...++ ++..+.+|++|.+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G--------------------~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~ 60 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKG--------------------FHVSVIARREVKLENVKRESTTPESITPLPLDYHDDD 60 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCc--------------------CEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHH
Confidence 46899995455566999999987 388999999988887765442 4667788999998
Q ss_pred HHHHhhcc-------ccEEEecCCccccHHHHHHHHHhCCe
Q 001559 652 SLCKCISQ-------VEIVISLLPASCHVMVANACIEFKKH 685 (1053)
Q Consensus 652 ~l~~~i~~-------~DvVI~~~p~~~~~~v~~aci~~g~~ 685 (1053)
++.+++++ .|++|+.+-......++.+|-+.|.+
T Consensus 61 sv~~~i~~~l~~~g~id~lv~~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 61 ALKLAIKSTIEKNGPFDLAVAWIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeccccchhhHHHHHHHHccC
Confidence 88776653 46777766555555666677776655
No 218
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.0033 Score=71.57 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAV 643 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~ 643 (1053)
..+++.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ + ++.++
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G--------------------~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAG--------------------AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 34567899999 7999999999999987 38999999988877665432 2 36778
Q ss_pred EecCCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
.+|++|.+++.+++.+ .|++|+.++.
T Consensus 71 ~~Dl~d~~sv~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 71 ALDLSSLASVAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred EecCCCHHHHHHHHHHHHHhCCCccEEEECCcc
Confidence 9999998887766543 7999999875
No 219
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.002 Score=72.99 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=70.4
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce-E--EEecCCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE-A--VQLDVSD 649 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~-~--~~~d~~d 649 (1053)
++||.|+| +|+.|..+.+.|+.++. .++.++..+..+-+.+.+.+|+.. . .....-|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~-------------------ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~ 62 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPD-------------------VELILISSRERAGKPVSDVHPNLRGLVDLPFQTID 62 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC-------------------eEEEEeechhhcCCchHHhCcccccccccccccCC
Confidence 67999999 79999999999999984 356655554434456666777643 1 1111113
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.+.+ ...+||+|+-|+|.+....++...++.|+.++|+|
T Consensus 63 ~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~VIDLS 101 (349)
T COG0002 63 PEKI--ELDECDVVFLALPHGVSAELVPELLEAGCKVIDLS 101 (349)
T ss_pred hhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCeEEECC
Confidence 3333 34569999999999988888888899999999998
No 220
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.96 E-value=0.0063 Score=66.52 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=57.7
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH----
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE---- 632 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~---- 632 (1053)
+|+|+|+|++|..+++.|+..| + -+++|+|.+ ..|++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-v------------------g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~ 61 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-F------------------GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEA 61 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHH
Confidence 5899999999999999999988 3 144444443 223333
Q ss_pred HHhcCCCceE--EEecCCCHHHH-HHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEe
Q 001559 633 VIEGIPNAEA--VQLDVSDHKSL-CKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTA 689 (1053)
Q Consensus 633 l~~~~~~~~~--~~~d~~d~~~l-~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~ 689 (1053)
+.+..|.+++ ...++.+.+.. .+.++++|+||+++..... ..+.+.|.+.++.++|.
T Consensus 62 l~~~np~v~i~~~~~~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~ 122 (234)
T cd01484 62 VNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIES 122 (234)
T ss_pred HHHHCCCCEEEEEeccCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3334555443 33334322222 3678889999998764322 33455666666655554
No 221
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.95 E-value=0.0023 Score=71.42 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=62.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~ 647 (1053)
+++.++|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+. ++..+.+|+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G--------------------~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv 64 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRG--------------------ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDV 64 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 457799998 7999999999999987 378999999888777665432 356788999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++.+ .|+|||+++..
T Consensus 65 ~d~~~v~~~~~~~~~~~g~id~li~nAg~~ 94 (275)
T PRK05876 65 RHREEVTHLADEAFRLLGHVDVVFSNAGIV 94 (275)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 999888776654 69999998753
No 222
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.94 E-value=0.0042 Score=70.55 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=58.7
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH----
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE---- 632 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~---- 632 (1053)
+|+|+|+|++|..+++.|+..| + -+++|+|.+ ..|++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~G-v------------------g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~ 61 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTG-F------------------GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEA 61 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhc-C------------------CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHH
Confidence 5999999999999999999988 3 245555543 123333
Q ss_pred HHhcCCCceE--EEecCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEe
Q 001559 633 VIEGIPNAEA--VQLDVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 633 l~~~~~~~~~--~~~d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~ 689 (1053)
+.+..|.+++ ...++.+.....+.++++|+||+++... ....+.+.|.+.++.+++.
T Consensus 62 l~~lNp~v~V~~~~~~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~ 121 (312)
T cd01489 62 VLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIES 121 (312)
T ss_pred HHHHCCCCeEEEEeccCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3333454443 3334443322346778899999988542 2234556666666666654
No 223
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.94 E-value=0.0028 Score=68.49 Aligned_cols=77 Identities=25% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++...+ .++..+.+|++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G--------------------~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~ 66 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG--------------------VNVGLLARTEENLKAVAEEVEAYGVKVVIATADVS 66 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCC
Confidence 46799999 7999999999999887 37899999988776654432 24667889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.+++.++++ .+|+||++++..
T Consensus 67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 67 DYEEVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEEcCccc
Confidence 9988877765 589999998653
No 224
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.94 E-value=0.0037 Score=67.78 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=61.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+ .++..+.+|+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 65 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAG--------------------ATVAFNDGLAAEARELAAALEAAGGRAHAIAADL 65 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 457899999 6999999999999987 37888899988777665433 3467888999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.+++. +.|+||++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 66 ADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99988876664 57999999865
No 225
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.0025 Score=69.61 Aligned_cols=77 Identities=23% Similarity=0.231 Sum_probs=61.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 65 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREG--------------------AKVVVADRDAAGGEETVALIREAGGEALFVACDV 65 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC
Confidence 457899999 6999999999999887 37999999988766555432 2467889999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+|.+++.+++++ .|+||++++.
T Consensus 66 ~~~~~i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 66 TRDAEVKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 999888777654 4999999864
No 226
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.0036 Score=68.32 Aligned_cols=78 Identities=24% Similarity=0.333 Sum_probs=63.6
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
...++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++...+ .++..+.+|
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 66 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAG--------------------AKVVLASRRVERLKELRAEIEAEGGAAHVVSLD 66 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3468899999 6999999999999887 37999999998887766542 246788899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.+++.+.++ ..|+||++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 67 VTDYQSIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 999888877765 47999999875
No 227
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0035 Score=70.67 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=63.5
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDV 647 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~ 647 (1053)
.+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.++ .+..+.+|+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv 66 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARG--------------------AKLALVDLEEAELAALAAELGGDDRVLTVVADV 66 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 3567899999 6999999999999987 379999999999888877664 234456999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 67 ~d~~~v~~~~~~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 67 TDLAAMQAAAEEAVERFGGIDVVVANAGIA 96 (296)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 99888776654 479999998753
No 228
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.92 E-value=0.0037 Score=69.42 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=65.2
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.|||+|.+|..++..|.+.+.. ...|.+++|+.++++++.+.+. +.. . .+.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~-----------------~~~v~v~~r~~~~~~~~~~~~g-~~~-----~--~~~ 56 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVP-----------------AKDIIVSDPSPEKRAALAEEYG-VRA-----A--TDN 56 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCC-----------------cceEEEEcCCHHHHHHHHHhcC-Cee-----c--CCh
Confidence 57899999999999999999877510 1378999999999888776542 221 1 123
Q ss_pred HHhhccccEEEecCCccccHHHHHHHHHh-CCeEEEee
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACIEF-KKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~aci~~-g~~~vD~s 690 (1053)
.+.+.++|+||-|+|+.....+.+.+... ++.++.++
T Consensus 57 ~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~~ 94 (267)
T PRK11880 57 QEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSIA 94 (267)
T ss_pred HHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEec
Confidence 45567899999999987665665554332 45666654
No 229
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=96.92 E-value=0.0039 Score=68.27 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=63.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
..++++|.| +|++|+.+++.|+++| .+|.+++|+.++.+++.+.+. ++..+.+|++|.
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEG--------------------ARVVIADIKPARARLAALEIGPAAIAVSLDVTRQ 64 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCH
Confidence 356899999 6999999999999987 379999999988887776543 467788999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 65 DSIDRIVAAAVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 88877665 46999999864
No 230
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.91 E-value=0.0041 Score=67.31 Aligned_cols=77 Identities=27% Similarity=0.299 Sum_probs=61.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CCCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IPNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~~~~~~~~d~ 647 (1053)
+.++|+|.| +|++|+.+++.|+++| ..|.+.+|+.++..++... ..++..+.+|+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl 64 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADG--------------------AEVIVVDICGDDAAATAELVEAAGGKARARQVDV 64 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 457899999 7999999999999987 3789999997665544432 23477888999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ .+|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 65 RDRAALKAAVAAGVEDFGRLDILVANAGI 93 (251)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 99988877765 57999999864
No 231
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.0035 Score=69.42 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~~~ 645 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++.+.+.+.+ .++.++.+
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 65 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAG--------------------AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPA 65 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEc
Confidence 457899999 6999999999999987 37899999987776655432 24567789
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.++++ ..|+||+++..
T Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (276)
T PRK05875 66 DVTDEDQVARAVDAATAWHGRLHGVVHCAGG 96 (276)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 9999888877766 57999999864
No 232
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.0029 Score=69.11 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=60.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|++|
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG--------------------ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 6789999 6999999999999987 37999999988777665433 246778899999
Q ss_pred HHHHHHhhc-------cccEEEecCCc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+++.+++. ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~id~lI~~ag~ 88 (252)
T PRK07677 62 PEDVQKMVEQIDEKFGRIDALINNAAG 88 (252)
T ss_pred HHHHHHHHHHHHHHhCCccEEEECCCC
Confidence 888776554 46999999864
No 233
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=96.90 E-value=0.0021 Score=65.34 Aligned_cols=77 Identities=27% Similarity=0.351 Sum_probs=61.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC--HHHHHHHHhcC----CCceEEEecC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY--LKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~--~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
|.++|+| +|++|+.+++.|++.+. ..|.+++|+ .++++++...+ .++.++++|+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-------------------~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~ 61 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-------------------RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDL 61 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-------------------EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-------------------eEEEEeeecccccccccccccccccccccccccccc
Confidence 4688998 79999999999999862 478999999 67777775443 3578889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++.+++.++++ ..|++|++++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 62 SDPESIRALIEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp TSHHHHHHHHHHHHHHHSSESEEEEECSCT
T ss_pred cccccccccccccccccccccccccccccc
Confidence 99888776654 469999998753
No 234
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.0042 Score=67.76 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=62.2
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CCCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IPNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~~~~~~~~d~~ 648 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+. ..++..+.+|++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~ 61 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG--------------------HNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLT 61 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCC
Confidence 35799999 6999999999999887 3788899988777665443 234778889999
Q ss_pred CHHHHHHhhc-cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-~~DvVI~~~p~~ 670 (1053)
|.+++.+.+. ..|+||++++..
T Consensus 62 ~~~~~~~~~~~~id~vi~~ag~~ 84 (257)
T PRK09291 62 DAIDRAQAAEWDVDVLLNNAGIG 84 (257)
T ss_pred CHHHHHHHhcCCCCEEEECCCcC
Confidence 9999888776 799999998653
No 235
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.004 Score=69.02 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=60.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+. ++..+.+|++|.++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~--~~~~~~~Dl~~~~~ 58 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG--------------------YEVWATARKAEDVEALAAA--GFTAVQLDVNDGAA 58 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHC--CCeEEEeeCCCHHH
Confidence 36789999 6999999999999887 3789999998887766543 46778899999888
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++++ ..|+||++++..
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~~ 83 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGYG 83 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCC
Confidence 876654 469999999753
No 236
>PLN00198 anthocyanidin reductase; Provisional
Probab=96.88 E-value=0.0029 Score=72.42 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=59.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHH-----hcCCCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI-----EGIPNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~-----~~~~~~~~~~~ 645 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.+..|+.+....+. ...++++.+.+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG--------------------YAVNTTVRDPENQKKIAHLRALQELGDLKIFGA 66 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC--------------------CEEEEEECCCCCHHHHHHHHhcCCCCceEEEEc
Confidence 3468899999 8999999999999987 36777777654332211 11235778899
Q ss_pred cCCCHHHHHHhhccccEEEecCC
Q 001559 646 DVSDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p 668 (1053)
|++|.+.+.+.++++|+||+++.
T Consensus 67 Dl~d~~~~~~~~~~~d~vih~A~ 89 (338)
T PLN00198 67 DLTDEESFEAPIAGCDLVFHVAT 89 (338)
T ss_pred CCCChHHHHHHHhcCCEEEEeCC
Confidence 99999999999999999999985
No 237
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.0042 Score=67.48 Aligned_cols=77 Identities=31% Similarity=0.365 Sum_probs=60.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.+..+++.+.+ +++..+.+|+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 64 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREG--------------------ASVVVADINAEGAERVAKQIVADGGTAIAVQVDV 64 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 457899999 5999999999999987 37899999977665554432 2456778999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 65 SDPDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 99988776555 47999999975
No 238
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.0034 Score=67.45 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=60.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++.+++. .+.++....+|++|.++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~d~~~ 59 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG--------------------WQVTATVRGPQQDTALQ-ALPGVHIEKLDMNDPAS 59 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC--------------------CEEEEEeCCCcchHHHH-hccccceEEcCCCCHHH
Confidence 36799999 7999999999999987 38999999987766543 34567788899999887
Q ss_pred HHHhhc-----cccEEEecCCc
Q 001559 653 LCKCIS-----QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i~-----~~DvVI~~~p~ 669 (1053)
+.++++ ..|+||++++.
T Consensus 60 ~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 60 LDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred HHHHHHHhhcCCCCEEEEcCcc
Confidence 776655 47999999865
No 239
>PRK08643 acetoin reductase; Validated
Probab=96.87 E-value=0.0037 Score=68.36 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=60.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
++.++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++...+ .++..+.+|++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 61 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG--------------------FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVS 61 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 35789998 7999999999999987 37899999988777665543 23567889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.++++ +.|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 62 DRDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9988776655 46999999865
No 240
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0036 Score=70.69 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAV 643 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~ 643 (1053)
..+.+.|+|.| +|++|+.+++.|++.| .+|.+++|+.+++++..+.+ .++..+
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G--------------------~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 72 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKG--------------------AHVVLAVRNLDKGKAAAARITAATPGADVTLQ 72 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 34568899999 6999999999999987 37889999988766544322 236678
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+|++|.+++.++++ ..|+||++++.
T Consensus 73 ~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 73 ELDLTSLASVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred ECCCCCHHHHHHHHHHHHhhCCCCCEEEECCcc
Confidence 899999888776654 47999999865
No 241
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0042 Score=67.90 Aligned_cols=76 Identities=21% Similarity=0.318 Sum_probs=62.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
.++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+. ++..+.+|+.|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~ 61 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG--------------------DRVLALDIDAAALAAFADALGDARFVPVACDLTDA 61 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCH
Confidence 35799999 5999999999999887 378999999988887776543 367789999999
Q ss_pred HHHHHhhcc-------ccEEEecCCc
Q 001559 651 KSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+++.+++.+ .|+||+++..
T Consensus 62 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 62 ASLAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 888766654 7999999864
No 242
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.86 E-value=0.0047 Score=72.10 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=56.8
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.++|+|+|.| +|++|+.++++|.+.| .+|.+++|..... +.......+.+..|++|.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G--------------------~~V~~v~r~~~~~--~~~~~~~~~~~~~Dl~d~ 76 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEG--------------------HYIIASDWKKNEH--MSEDMFCHEFHLVDLRVM 76 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCC--------------------CEEEEEEeccccc--cccccccceEEECCCCCH
Confidence 3568999999 6999999999999887 3788888753211 111111246677899998
Q ss_pred HHHHHhhccccEEEecCC
Q 001559 651 KSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p 668 (1053)
+.+.+.++++|+||+++.
T Consensus 77 ~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 77 ENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred HHHHHHHhCCCEEEEccc
Confidence 888888889999999984
No 243
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.0049 Score=66.64 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=63.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+..+ +..+.+|++|.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~~~-~~~~~~D~~~~~ 66 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRG--------------------ARVVAAARNAAALDRLAGETG-CEPLRLDVGDDA 66 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhC-CeEEEecCCCHH
Confidence 457899999 5999999999999987 379999999988888776543 567889999988
Q ss_pred HHHHhhc---cccEEEecCCcc
Q 001559 652 SLCKCIS---QVEIVISLLPAS 670 (1053)
Q Consensus 652 ~l~~~i~---~~DvVI~~~p~~ 670 (1053)
++.++++ ..|+||++++..
T Consensus 67 ~v~~~~~~~~~~d~vi~~ag~~ 88 (245)
T PRK07060 67 AIRAALAAAGAFDGLVNCAGIA 88 (245)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 8877765 479999999753
No 244
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.86 E-value=0.0033 Score=68.76 Aligned_cols=78 Identities=26% Similarity=0.332 Sum_probs=61.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.+ .++..+.+|+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 65 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAG--------------------AAVAIADLNQDGANAVADEINKAGGKAIGVAMDV 65 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CeEEEEeCChHHHHHHHHHHHhcCceEEEEECCC
Confidence 457899999 6999999999999987 37889999987766665443 2356688999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++.+ .|+||+++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 66 TNEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 999888766553 79999998653
No 245
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.86 E-value=0.0039 Score=69.18 Aligned_cols=78 Identities=28% Similarity=0.302 Sum_probs=62.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 68 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG--------------------AKVAILDRNQEKAEAVVAEIKAAGGEALAVKADV 68 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 467899999 6999999999999887 37999999988777766543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~li~~ag~~ 98 (278)
T PRK08277 69 LDKESLEQARQQILEDFGPCDILINGAGGN 98 (278)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 99887766554 579999998743
No 246
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.83 E-value=0.0048 Score=74.82 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=71.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----------CCCceEEE
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----------IPNAEAVQ 644 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----------~~~~~~~~ 644 (1053)
++|.|||+|.+|+++|..|++.| .+|++.|+++++++++.+. +.......
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G--------------------~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 64 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG--------------------IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPP 64 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 57999999999999999999987 3899999999887765321 11100000
Q ss_pred e-cCCCHHHHHHhhccccEEEecCCcccc--HHHH---HHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeE
Q 001559 645 L-DVSDHKSLCKCISQVEIVISLLPASCH--VMVA---NACIEFKKHLVTASYIDDSMSKLDEKAKGAGITI 710 (1053)
Q Consensus 645 ~-d~~d~~~l~~~i~~~DvVI~~~p~~~~--~~v~---~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~ 710 (1053)
. .+.-..++.+.++++|+||.++|.... ..+. ...+..++ +++.+-.......+.+.+...+..+
T Consensus 65 ~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~s~l~~~~~~~~r~~ 135 (495)
T PRK07531 65 EGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLPSDLQEGMTHPERLF 135 (495)
T ss_pred hhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCHHHHHhhcCCcceEE
Confidence 0 011123466788999999999998753 2221 22233343 5666544444556655555555433
No 247
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.83 E-value=0.0045 Score=68.70 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=62.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|.+||+|.+|.++++.|.+.+.. ...+|.++ +|+.++++.+.+. ++... .+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~----------------~~~~i~v~~~r~~~~~~~~~~~--g~~~~-------~~~ 55 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVV----------------PPSRISTADDSNPARRDVFQSL--GVKTA-------ASN 55 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCC----------------CcceEEEEeCCCHHHHHHHHHc--CCEEe-------CCh
Confidence 5799999999999999999987621 01368888 9999988776542 23221 223
Q ss_pred HHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEee
Q 001559 654 CKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~s 690 (1053)
.+.++++|+||-|+|+.....+... .+..++.++++.
T Consensus 56 ~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~~ 95 (266)
T PLN02688 56 TEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVA 95 (266)
T ss_pred HHHHhcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEec
Confidence 4567789999999986554444433 234567677663
No 248
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.0029 Score=69.79 Aligned_cols=73 Identities=27% Similarity=0.423 Sum_probs=59.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
++.|+|.| +|++|+.+++.|++.| .+|.+.+|+.++.+. ..++..+.+|++|.++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g--------------------~~V~~~~r~~~~~~~----~~~~~~~~~D~~d~~~ 59 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAG--------------------YRVFGTSRNPARAAP----IPGVELLELDVTDDAS 59 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC--------------------CEEEEEeCChhhccc----cCCCeeEEeecCCHHH
Confidence 45799999 7999999999999987 379999998766542 2357889999999998
Q ss_pred HHHhhcc-------ccEEEecCCcc
Q 001559 653 LCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+.+++++ .|+||++++..
T Consensus 60 ~~~~~~~~~~~~g~~d~li~~ag~~ 84 (270)
T PRK06179 60 VQAAVDEVIARAGRIDVLVNNAGVG 84 (270)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCC
Confidence 8887764 59999999753
No 249
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.83 E-value=0.0058 Score=68.54 Aligned_cols=98 Identities=8% Similarity=0.088 Sum_probs=67.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.++|.+||+|.+|.++++.|.+.+.. ...+|.+++|+. ++++.+...++ +... .+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~----------------~~~~v~v~~r~~~~~~~~l~~~~g-~~~~-------~~ 58 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVV----------------KGEQITVSNRSNETRLQELHQKYG-VKGT-------HN 58 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC----------------CcceEEEECCCCHHHHHHHHHhcC-ceEe-------CC
Confidence 36899999999999999999887511 013788999975 46777766543 3221 22
Q ss_pred HHHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEe-eccChh
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTA-SYIDDS 695 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~-sy~~~~ 695 (1053)
..+.++++|+||-|+|+.....+... .+..++.++++ +.++.+
T Consensus 59 ~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~ 105 (279)
T PRK07679 59 KKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTH 105 (279)
T ss_pred HHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH
Confidence 34567789999999998765444433 24567789997 555433
No 250
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.0047 Score=66.25 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=60.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d 649 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+++|+.++..+....+. .++.+.+|++|
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~ 65 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG--------------------ARVALIGRGAAPLSQTLPGVPADALRIGGIDLVD 65 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC--------------------CeEEEEeCChHhHHHHHHHHhhcCceEEEeecCC
Confidence 467899999 6999999999999887 379999998877655443322 36778899999
Q ss_pred HHHHHHhhc-------cccEEEecCCc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+++.++++ .+|+||++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 66 PQAARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHHHHhCCcCEEEECCcc
Confidence 888876655 47999999864
No 251
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.82 E-value=0.0046 Score=69.59 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=54.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC-----ceEEEec---
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-----AEAVQLD--- 646 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-----~~~~~~d--- 646 (1053)
++|.|||+|.+|..+|..|++.| .+|+++|++.++++++.+.... ++.-.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--------------------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 61 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--------------------FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAA 61 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--------------------CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 57999999999999999999887 3799999999888776532110 0000000
Q ss_pred -------CCCHHHHHHhhccccEEEecCCcccc
Q 001559 647 -------VSDHKSLCKCISQVEIVISLLPASCH 672 (1053)
Q Consensus 647 -------~~d~~~l~~~i~~~DvVI~~~p~~~~ 672 (1053)
++-..++.+.++++|+||.|+|-...
T Consensus 62 ~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~ 94 (288)
T PRK09260 62 RQAALARLSYSLDLKAAVADADLVIEAVPEKLE 94 (288)
T ss_pred HHHHHhCeEEeCcHHHhhcCCCEEEEeccCCHH
Confidence 00113466788999999999997653
No 252
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=96.82 E-value=0.0047 Score=67.04 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=62.0
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++...+ .++..+.+|+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~ 61 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEG--------------------AKVAVFDLNREAAEKVAADIRAKGGNAQAFACDI 61 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 357899999 6999999999999987 37888999988777665432 3477889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.+++. ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 62 TDRDSVDTAVAAAEQALGPVDVLVNNAGW 90 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99888777665 47999999864
No 253
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.0047 Score=71.02 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=62.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++.|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G--------------------~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv 66 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRG--------------------AKVVLLARGEEGLEALAAEIRAAGGEALAVVADV 66 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 457899999 6999999999999987 37899999988877766543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|++||+++..
T Consensus 67 ~d~~~v~~~~~~~~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 67 ADAEAVQAAADRAEEELGPIDTWVNNAMVT 96 (334)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCcC
Confidence 99988876654 579999998753
No 254
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.0056 Score=66.39 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=60.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
++++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.++ ++..+++|++|.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEG--------------------ARVAITGRDPASLEAARAELGESALVIRADAGDV 64 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEecCCHHHHHHHHHHhCCceEEEEecCCCH
Confidence 357899999 6999999999999987 378889999887777766554 466788999987
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 65 AAQKALAQALAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 76654433 57999999865
No 255
>PRK07904 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.004 Score=68.51 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=58.2
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH-HHHHHhcC-----CCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD-AEEVIEGI-----PNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~-a~~l~~~~-----~~~~~~~~d 646 (1053)
.++|+|.| +|++|+++|+.|++.+. ..|.+.+|+.++ ++++.+.+ .++.++.+|
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg-------------------~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D 68 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAP-------------------ARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFD 68 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-------------------CeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEec
Confidence 46799999 79999999999998852 378899998775 55554332 147788999
Q ss_pred CCCHHHHHHhhc------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ +.|++|++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 69 ALDTDSHPKVIDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence 998877554433 58999988765
No 256
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.004 Score=68.76 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=60.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+.+++.|++.| ..|.+++|+.++.+++.+.+ .++.++.+|+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv 67 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAG--------------------ANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADV 67 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCC
Confidence 457899999 6999999999999887 37899999987766554332 2456788999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+|.+++.+++++ .|+||++++.
T Consensus 68 ~~~~~i~~~~~~~~~~~~~iD~vi~~ag~ 96 (264)
T PRK07576 68 RDYAAVEAAFAQIADEFGPIDVLVSGAAG 96 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 998888776654 5999998854
No 257
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=96.81 E-value=0.0039 Score=70.04 Aligned_cols=107 Identities=20% Similarity=0.152 Sum_probs=70.1
Q ss_pred EEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-HHHhcCCCceEEEecCCCHHHHHH
Q 001559 578 LIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-EVIEGIPNAEAVQLDVSDHKSLCK 655 (1053)
Q Consensus 578 lIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-~l~~~~~~~~~~~~d~~d~~~l~~ 655 (1053)
||.| +|++|+.+++.|.+++.. ..|.++++...... .....++..+.+.+|++|.+++.+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~------------------~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~ 62 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYI------------------YEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEE 62 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCc------------------eEEEEcccccccccchhhhcccceeEEEeccccHHHHHH
Confidence 4677 899999999999999831 37888888654322 222333334488999999999999
Q ss_pred hhccccEEEecCCcc-ccH-HHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEE
Q 001559 656 CISQVEIVISLLPAS-CHV-MVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 656 ~i~~~DvVI~~~p~~-~~~-~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l 711 (1053)
+++++|+||+++.+. ... .-.+.+.+. +-.-++.+.+.|++.|+.-+
T Consensus 63 a~~g~d~V~H~Aa~~~~~~~~~~~~~~~v---------NV~GT~nvl~aa~~~~Vkrl 111 (280)
T PF01073_consen 63 ALEGVDVVFHTAAPVPPWGDYPPEEYYKV---------NVDGTRNVLEAARKAGVKRL 111 (280)
T ss_pred HhcCCceEEEeCccccccCcccHHHHHHH---------HHHHHHHHHHHHHHcCCCEE
Confidence 999999999997432 211 111111111 11235566677777777643
No 258
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.81 E-value=0.0037 Score=67.29 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=60.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
+++|+|.| +|++|+.+++.|+++| .+|.+++|+.++.+.+...+ .++..+.+|++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~ 64 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG--------------------AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVS 64 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCC
Confidence 46899999 6999999999999887 36899999988776655433 24667789999
Q ss_pred CHHHHHHhhcc-------ccEEEecCCc
Q 001559 649 DHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
|.+++.+++++ .|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 65 DEAAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 98887766654 4999999864
No 259
>PRK08263 short chain dehydrogenase; Provisional
Probab=96.80 E-value=0.0049 Score=68.43 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=62.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~ 651 (1053)
++.|+|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.++ .+..+.+|++|.+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~ 62 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERG--------------------DRVVATARDTATLADLAEKYGDRLLPLALDVTDRA 62 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHH
Confidence 35799999 7999999999999887 378999999988887776554 4677889999988
Q ss_pred HHHHhhc-------cccEEEecCCcc
Q 001559 652 SLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++.+++. ..|+||++++..
T Consensus 63 ~~~~~~~~~~~~~~~~d~vi~~ag~~ 88 (275)
T PRK08263 63 AVFAAVETAVEHFGRLDIVVNNAGYG 88 (275)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCc
Confidence 8776655 469999998753
No 260
>PRK08589 short chain dehydrogenase; Validated
Probab=96.80 E-value=0.0036 Score=69.52 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=60.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+++++.|++.| .+|.+++|+ ++++++.+.+ .++..+.+|+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G--------------------~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl 63 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEG--------------------AYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDI 63 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeec
Confidence 457899999 6999999999999987 378999999 6666655443 2467889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|++|++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 64 SDEQQVKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred CCHHHHHHHHHHHHHHcCCcCEEEECCCC
Confidence 99887766554 36999999865
No 261
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.80 E-value=0.0078 Score=70.72 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=68.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE---------EEe
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA---------VQL 645 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~---------~~~ 645 (1053)
|+|.|||+|++|.++|..|+. | + +|+++|++.++.+++.+....+.- ...
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G-~-------------------~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~ 59 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N-H-------------------EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKI 59 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C-C-------------------cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCC
Confidence 479999999999999977764 5 3 799999999999988764321000 000
Q ss_pred cCCCHHHHHHhhccccEEEecCCcccc-----------HHHHHHH--HHhCCeEEEeeccChh-HHHHHHHHHHcCC
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCH-----------VMVANAC--IEFKKHLVTASYIDDS-MSKLDEKAKGAGI 708 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~-----------~~v~~ac--i~~g~~~vD~sy~~~~-~~~L~~~Ak~~Gv 708 (1053)
..+...+..+.++++|+||-|+|.... ..+.+.. ++.|+.+|+.|..++. ++++.+...+.|+
T Consensus 60 ~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v 136 (388)
T PRK15057 60 HFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI 136 (388)
T ss_pred cEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE
Confidence 011112234567899999999986521 0111111 2456667777765543 3445444444443
No 262
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.79 E-value=0.0065 Score=68.86 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEE-----ecCC
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQ-----LDVS 648 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~-----~d~~ 648 (1053)
+++|.|||+|..|.++|..|++.+ + .|.++.|+++-++++.+...|.++.. ..+.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng-~-------------------~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~ 60 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG-H-------------------EVRLWGRDEEIVAEINETRENPKYLPGILLPPNLK 60 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC-C-------------------eeEEEecCHHHHHHHHhcCcCccccCCccCCcccc
Confidence 478999999999999999999987 2 89999999999888876533322221 1122
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEee
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTAS 690 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~s 690 (1053)
-..++.++++++|+|+-++|......+++. .+..++.++.++
T Consensus 61 at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 61 ATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred cccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEe
Confidence 235688999999999999998665554433 455666666665
No 263
>PRK12320 hypothetical protein; Provisional
Probab=96.78 E-value=0.007 Score=75.61 Aligned_cols=90 Identities=24% Similarity=0.234 Sum_probs=69.8
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|.| +|++|+.+++.|.+.| .+|.+++|..... ..++++++..|++|.. +
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G--------------------~~Vi~ldr~~~~~-----~~~~ve~v~~Dl~d~~-l 54 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG--------------------HTVSGIAQHPHDA-----LDPRVDYVCASLRNPV-L 54 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--------------------CEEEEEeCChhhc-----ccCCceEEEccCCCHH-H
Confidence 5799999 7999999999999887 3788898875431 1245788999998874 7
Q ss_pred HHhhccccEEEecCCccc----------cHHHHHHHHHhCCeEEEee
Q 001559 654 CKCISQVEIVISLLPASC----------HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~----------~~~v~~aci~~g~~~vD~s 690 (1053)
.+++.++|+||++++... ...++++|.+.|+.+|-+|
T Consensus 55 ~~al~~~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~S 101 (699)
T PRK12320 55 QELAGEADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVS 101 (699)
T ss_pred HHHhcCCCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 788889999999997531 1245678888888777666
No 264
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.78 E-value=0.0023 Score=72.26 Aligned_cols=73 Identities=25% Similarity=0.259 Sum_probs=59.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++|+|.| +|++|+.+++.|++.+ .+|.+.+|+.++...+.. .+++.+.+|++|.+++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~~~~~l 58 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG--------------------EEVRVLVRPTSDRRNLEG--LDVEIVEGDLRDPASL 58 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC--------------------CEEEEEEecCcccccccc--CCceEEEeeCCCHHHH
Confidence 4799999 6999999999999887 378999998665433221 2477889999999999
Q ss_pred HHhhccccEEEecCCc
Q 001559 654 CKCISQVEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~ 669 (1053)
.++++++|+||++++.
T Consensus 59 ~~~~~~~d~vi~~a~~ 74 (328)
T TIGR03466 59 RKAVAGCRALFHVAAD 74 (328)
T ss_pred HHHHhCCCEEEEecee
Confidence 9999999999999853
No 265
>PLN02256 arogenate dehydrogenase
Probab=96.78 E-value=0.0079 Score=68.37 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.++++|.|||+|.+|..++..|.+.| .+|.+++++... +.+..+. +.. ..+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G--------------------~~V~~~d~~~~~--~~a~~~g-v~~----~~~-- 84 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQG--------------------HTVLATSRSDYS--DIAAELG-VSF----FRD-- 84 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC--------------------CEEEEEECccHH--HHHHHcC-Cee----eCC--
Confidence 45789999999999999999998876 378889988632 3333332 221 222
Q ss_pred HHHHhh-ccccEEEecCCccccHHHHHHH----HHhCCeEEEeecc
Q 001559 652 SLCKCI-SQVEIVISLLPASCHVMVANAC----IEFKKHLVTASYI 692 (1053)
Q Consensus 652 ~l~~~i-~~~DvVI~~~p~~~~~~v~~ac----i~~g~~~vD~sy~ 692 (1053)
+.+++ .++|+||-|+|+.....++... +..++.++|++-.
T Consensus 85 -~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 85 -PDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred -HHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCCc
Confidence 33444 4699999999987555554443 4567888898764
No 266
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.78 E-value=0.004 Score=68.04 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=61.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~ 647 (1053)
..++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.+. ++..+.+|+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G--------------------~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl 67 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYG--------------------AEIIINDITAERAELAVAKLRQEGIKAHAAPFNV 67 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC--------------------CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 467899999 7999999999999987 378999999887776655432 356678999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 68 THKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 99988876654 36999999865
No 267
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.77 E-value=0.013 Score=63.40 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH----------HHHHHHHhcCCCc
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL----------KDAEEVIEGIPNA 640 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~----------~~a~~l~~~~~~~ 640 (1053)
+.+.++|+|.|.|.+|+.+++.|.+.|. ..|.|+|.+. +..+...+.. .+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-------------------~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~-~~ 79 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-------------------KVLAVSDPDGYIYDPGITTEELINYAVALG-GS 79 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-------------------EEEEEEcCCCcEECCCCCHHHHHHHHHhhC-Cc
Confidence 4567999999999999999999999872 3688888876 5554443332 12
Q ss_pred eEE-EecCCCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEec
Q 001559 641 EAV-QLDVSDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 641 ~~~-~~d~~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
... ..|..+.+.+... +||++|-|++... +... +.+.++.+|--.-+.|-+.+-.+.-+++|+.++++
T Consensus 80 ~~~~~~~~~~~~~l~~~--~~DVlipaA~~~~i~~~~---a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 80 ARVKVQDYFPGEAILGL--DVDIFAPCALGNVIDLEN---AKKLKAKVVAEGANNPTTDEALRILHERGIVVAPD 149 (217)
T ss_pred cccCcccccCcccceec--cccEEeeccccCccChhh---HhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEECh
Confidence 111 1122233344332 7999999997543 2222 23344555555544333334455668899998874
No 268
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.77 E-value=0.0054 Score=68.78 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=64.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|..++..|.+.| .+|.+++++.+.++++.+.. .+.. ..+ ..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g--------------------~~V~~~d~~~~~~~~a~~~g-~~~~----~~~--~~- 52 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG--------------------HTVYGVSRRESTCERAIERG-LVDE----AST--DL- 52 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHCC-Cccc----ccC--CH-
Confidence 47999999999999999999886 37999999988887765531 1110 111 12
Q ss_pred HhhccccEEEecCCccccHHHHHH---HHHhCCeEEEeeccCh
Q 001559 655 KCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTASYIDD 694 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~sy~~~ 694 (1053)
+.++++|+||.|+|......+.+. .+..++.+.|++.+..
T Consensus 53 ~~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~ 95 (279)
T PRK07417 53 SLLKDCDLVILALPIGLLLPPSEQLIPALPPEAIVTDVGSVKA 95 (279)
T ss_pred hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEEEeCcchHH
Confidence 356899999999998765444433 2345677888876543
No 269
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.0043 Score=68.25 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=61.2
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CC--CceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IP--NAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~--~~~~~~ 644 (1053)
.+.+.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+. .+ ++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAG--------------------ASVAICGRDEERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEE
Confidence 3467899999 6999999999999987 3789999998877655433 22 355778
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|++|.+++.++++ ..|+||++++..
T Consensus 66 ~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 66 CDVLDEADVAAFAAAVEARFGGVDMLVNNAGQG 98 (265)
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 99999988766554 369999998753
No 270
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=96.75 E-value=0.0065 Score=65.61 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=62.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
+.++++|.| +|++|+.+++.|+++| ..|.+.+|+.++++++....+ ++.++.+|++|.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQG--------------------AIVGLHGTRVEKLEALAAELGERVKIFPANLSDR 64 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCH
Confidence 457899999 7999999999999987 278888899888887765543 467888999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 65 DEVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 88776643 47999999865
No 271
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0058 Score=67.19 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=61.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~ 648 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+++|+.++.+++...+ .++..+.+|++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG--------------------ARLLLVGRNAEKLEALAARLPYPGRHRWVVADLT 63 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHhcCCceEEEEccCC
Confidence 357899999 7999999999999987 37999999988877665442 24678889999
Q ss_pred CHHHHHHhhc------cccEEEecCCc
Q 001559 649 DHKSLCKCIS------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~------~~DvVI~~~p~ 669 (1053)
|.+++.++++ ..|+||++++.
T Consensus 64 d~~~~~~~~~~~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 64 SEAGREAVLARAREMGGINVLINNAGV 90 (263)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 9887766544 46999999865
No 272
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0056 Score=66.52 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=60.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~~d 646 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++...+ + ++..+.+|
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG--------------------RDLALCARRTDRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46799999 7999999999999887 37899999988877665432 2 35678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.++++ ..|+||++++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 62 VNDHDQVFEVFAEFRDELGGLDRVIVNAGIG 92 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 999887766554 479999998653
No 273
>PRK08264 short chain dehydrogenase; Validated
Probab=96.75 E-value=0.0054 Score=66.16 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=60.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.++|+|+| +|++|+.+++.|++.|. .+|.+++|+.+++++ .-.++.++.+|++|.+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~-------------------~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~ 62 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA-------------------AKVYAAARDPESVTD---LGPRVVPLQLDVTDPA 62 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc-------------------ccEEEEecChhhhhh---cCCceEEEEecCCCHH
Confidence 457899999 79999999999998871 178999999877654 2235778899999998
Q ss_pred HHHHhhc---cccEEEecCCc
Q 001559 652 SLCKCIS---QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~---~~DvVI~~~p~ 669 (1053)
++.++++ ..|+||++++.
T Consensus 63 ~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 63 SVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred HHHHHHHhcCCCCEEEECCCc
Confidence 8887776 47999999875
No 274
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=96.75 E-value=0.0089 Score=65.35 Aligned_cols=129 Identities=19% Similarity=0.117 Sum_probs=79.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-HHHhc--CCCceEEEecCCCHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-EVIEG--IPNAEAVQLDVSDHK 651 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-~l~~~--~~~~~~~~~d~~d~~ 651 (1053)
++|+++|.|.+|...++.|.+.+.. --|..++++.++.- .+.+. ++..-++ +-.+.+
T Consensus 3 ~~vvqyGtG~vGv~air~l~akpe~------------------elvgawv~s~ak~Gkdlgelagl~dlgV~--a~~~~~ 62 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAKPEL------------------ELVGAWVHSAAKSGKDLGELAGLPDLGVI--ATNSID 62 (350)
T ss_pred ceeEEeccchHHHHHHHHHHcCCCC------------------ceEEEEecCcccccccHHHhcCCCCceeE--eecccc
Confidence 6799999999999999988877533 14677788766543 22221 2221111 111111
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee--------ccChhHHHHHHHHHHcCCeEEecCCCChhHHHH
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--------YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHM 723 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s--------y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~m 723 (1053)
..-..+ ..+++.+..-.. ..-.+.|+++|.++|.-. |.++...+.++.|+++|...+.+.|++||..+-
T Consensus 63 avlAtl-~~~~~y~~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pGF~~d 139 (350)
T COG3804 63 AVLATL-ADAVIYAPLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPGFVTD 139 (350)
T ss_pred cceecc-ccceeeecccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCccHHHH
Confidence 111111 223333333111 344678999999999873 234556677789999999899999999996655
Q ss_pred HHH
Q 001559 724 MAM 726 (1053)
Q Consensus 724 la~ 726 (1053)
++-
T Consensus 140 llp 142 (350)
T COG3804 140 LLP 142 (350)
T ss_pred HHH
Confidence 443
No 275
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=96.75 E-value=0.0079 Score=76.65 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=93.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-------HHHHHHhcCCCceEEEe
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-------DAEEVIEGIPNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-------~a~~l~~~~~~~~~~~~ 645 (1053)
+..+|.|+|.|.||+.+++.|.++.. .+..+++.++. -+.|++++.. ....+...+.. ...
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~----~l~~~~g~~~~-----v~~I~~s~~~~~~~~gi~~~~~~~~~~~---~~~ 524 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQS----TLSARTGFEFV-----LVGVVDSRRSLLNYDGLDASRALAFFDD---EAV 524 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHH----HHHHhcCCCEE-----EEEEEeCCccccCccCCCHHHHHhhHHh---hcC
Confidence 45789999999999999999976541 22233333332 3556666532 11122211110 001
Q ss_pred cCCCHHHHHHhhcc----ccEEEecCCccccHHHHHHHHHhCCeEEEeecc-----ChhHHHHHHHHHHcCCeEEecCCC
Q 001559 646 DVSDHKSLCKCISQ----VEIVISLLPASCHVMVANACIEFKKHLVTASYI-----DDSMSKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 646 d~~d~~~l~~~i~~----~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~-----~~~~~~L~~~Ak~~Gv~~l~g~G~ 716 (1053)
+ .+.+.+.+.+.+ .++||+|++..-.......+++.|+|+|+.+=. .....+|.+.|+++|+.+..++-+
T Consensus 525 ~-~~~~~~~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV 603 (810)
T PRK09466 525 E-WDEESLFLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATV 603 (810)
T ss_pred C-ccHHHHHHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEecee
Confidence 1 133445555543 359999998543333445899999999998631 145568889999999999977655
Q ss_pred ChhHHHHHHHHHHHHhhhccCceEEEEe
Q 001559 717 DPGIDHMMAMKMINHAHVRKGKIKSFTS 744 (1053)
Q Consensus 717 dPGi~~mla~~~i~~~~~~~~~v~sf~~ 744 (1053)
.-|+.-+- .++.+...+++|.+|+-
T Consensus 604 ~~giPii~---~l~~l~~~gd~i~~i~G 628 (810)
T PRK09466 604 GAGLPINH---TVRDLRNSGDSILAISG 628 (810)
T ss_pred eeccChHH---HHHHHHhccCcEEEEEE
Confidence 44443322 12333334677877763
No 276
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.74 E-value=0.0047 Score=66.72 Aligned_cols=78 Identities=29% Similarity=0.440 Sum_probs=61.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+++++|+| +|++|+.+++.|++.| .+|.+. +|+.++.+++.+.+ .++.++.+|
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g--------------------~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG--------------------AKVVIAYDINEEAAQELLEEIKEEGGDAIAVKAD 63 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 457899999 6999999999999887 377777 99887766655433 236778899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.+++. ..|+||++++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 64 VSSEEDVENLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 999988876665 689999998653
No 277
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.74 E-value=0.0062 Score=68.32 Aligned_cols=94 Identities=13% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++|.|||+|.+|.+++..|.+.+.. ...+|.+++|+. ++++.+...++.+.. ..+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~----------------~~~~V~~~~r~~~~~~~~l~~~~~~~~~-------~~~ 57 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVA----------------TPEEIILYSSSKNEHFNQLYDKYPTVEL-------ADN 57 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC----------------CcccEEEEeCCcHHHHHHHHHHcCCeEE-------eCC
Confidence 46799999999999999999887511 013688888864 455555554432221 122
Q ss_pred HHHhhccccEEEecCCccccHHHHHHH---HHhCCeEEEee
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTAS 690 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~s 690 (1053)
..++++++|+||-|+|+.....+...+ +..+++++.+.
T Consensus 58 ~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~ 98 (277)
T PRK06928 58 EAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIA 98 (277)
T ss_pred HHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEEC
Confidence 345667899999999987666665544 45677777765
No 278
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=96.74 E-value=0.0037 Score=72.01 Aligned_cols=77 Identities=26% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc---CCCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG---IPNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~---~~~~~~~~~d~~ 648 (1053)
++++|+|.| +|++|+++++.|++.| .+|.+++|+.......... -.++..+.+|++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~ 62 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELG--------------------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIR 62 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCC--------------------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCC
Confidence 357899999 6999999999999987 3788888876544332221 124667889999
Q ss_pred CHHHHHHhhcc--ccEEEecCCc
Q 001559 649 DHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
|.+++.+++++ .|+||+++..
T Consensus 63 ~~~~~~~~~~~~~~d~vih~A~~ 85 (349)
T TIGR02622 63 DAAKLRKAIAEFKPEIVFHLAAQ 85 (349)
T ss_pred CHHHHHHHHhhcCCCEEEECCcc
Confidence 99999998886 5999999863
No 279
>PLN02686 cinnamoyl-CoA reductase
Probab=96.73 E-value=0.0054 Score=71.49 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=62.2
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc---------CCCce
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG---------IPNAE 641 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~---------~~~~~ 641 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.++.|+.++.+.+.+. .+++.
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G--------------------~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~ 110 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG--------------------YSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIW 110 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhhhccccccCCceE
Confidence 4578899999 6999999999999987 3788878887666554321 12467
Q ss_pred EEEecCCCHHHHHHhhccccEEEecCCc
Q 001559 642 AVQLDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 642 ~~~~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++.+|++|.+.+.++++++|.|++++..
T Consensus 111 ~v~~Dl~d~~~l~~~i~~~d~V~hlA~~ 138 (367)
T PLN02686 111 TVMANLTEPESLHEAFDGCAGVFHTSAF 138 (367)
T ss_pred EEEcCCCCHHHHHHHHHhccEEEecCee
Confidence 7889999999999999999999987653
No 280
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.72 E-value=0.0043 Score=67.02 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=61.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC------CceEEEecC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQLDV 647 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~d~ 647 (1053)
|+|.||| +|.+|..++..|++.+ .+|.+++|+.++++++...+. ++.. .+-.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G--------------------~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~ 59 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG--------------------NKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTG 59 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC--------------------CEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEE
Confidence 5799997 8999999999999887 278899999998887765321 1100 0111
Q ss_pred CCHHHHHHhhccccEEEecCCccccHHHHHHHHH--hCCeEEEee
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCHVMVANACIE--FKKHLVTAS 690 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~--~g~~~vD~s 690 (1053)
+ ...+.++++|+||-++|+.....+...... .++.++|++
T Consensus 60 ~---~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ 101 (219)
T TIGR01915 60 A---DNAEAAKRADVVILAVPWDHVLKTLESLRDELSGKLVISPV 101 (219)
T ss_pred e---ChHHHHhcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEec
Confidence 1 224567789999999998765544432211 234556654
No 281
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.71 E-value=0.0051 Score=67.42 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=62.1
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++.+.+...+ .++..+.+|
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 69 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAG--------------------ARVVLSARKAEELEEAAAHLEALGIDALWIAAD 69 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3468899999 7999999999999987 37899999988776655432 246678999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.++++ ..|+||++++..
T Consensus 70 l~d~~~i~~~~~~~~~~~~~id~vi~~ag~~ 100 (259)
T PRK08213 70 VADEADIERLAEETLERFGHVDILVNNAGAT 100 (259)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 999988865554 479999998753
No 282
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.70 E-value=0.0061 Score=67.60 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCCeEEEEcCc---hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---HHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGAG---RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGaG---~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|++ ++|+++|+.|++.| .+|.+.+|+. +.++++....+.+..+.+|
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G--------------------~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREG--------------------AELAFTYQNDKLKGRVEEFAAQLGSDIVLPCD 64 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCC--------------------CEEEEEecchhHHHHHHHHHhccCCceEeecC
Confidence 35779999974 79999999999988 2788888873 3445555545556678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 65 l~~~~~v~~~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 65 VAEDASIDAMFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCEEEECCcc
Confidence 999988876654 36999999875
No 283
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.0052 Score=68.50 Aligned_cols=75 Identities=23% Similarity=0.312 Sum_probs=58.1
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEecCCCH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLDVSDH 650 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~~d~ 650 (1053)
+.++|-|+|++|+.+++.|+ .| .+|.+++|+.++++++.+.+. ++..+.+|++|.
T Consensus 3 k~~lItGa~gIG~~la~~l~-~G--------------------~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~ 61 (275)
T PRK06940 3 EVVVVIGAGGIGQAIARRVG-AG--------------------KKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSR 61 (275)
T ss_pred CEEEEECCChHHHHHHHHHh-CC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCH
Confidence 45677789999999999996 55 378999999887766654432 466788999999
Q ss_pred HHHHHhhc------cccEEEecCCcc
Q 001559 651 KSLCKCIS------QVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~------~~DvVI~~~p~~ 670 (1053)
+++.++++ ..|+||++++..
T Consensus 62 ~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 62 ESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 88876664 479999998753
No 284
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=96.69 E-value=0.0048 Score=70.88 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=58.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-----HHHHHHhcC-----CCceEE
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-----DAEEVIEGI-----PNAEAV 643 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-----~a~~l~~~~-----~~~~~~ 643 (1053)
++|+|.| +|++|+.+++.|++.| .+|.+++|+.+ +.+.+.+.. ++++.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG--------------------YEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLH 60 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC--------------------CEEEEEecCCcccchhhhhhhhhccccccccceeEE
Confidence 4799999 6999999999999887 37888888743 333332221 247788
Q ss_pred EecCCCHHHHHHhhcc--ccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
.+|++|.+.+.+++++ +|+||+++..
T Consensus 61 ~~Dl~d~~~l~~~~~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 61 YGDLTDSSNLRRIIDEIKPTEIYNLAAQ 88 (343)
T ss_pred EeccCCHHHHHHHHHhCCCCEEEECCcc
Confidence 9999999999999885 5999999864
No 285
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.69 E-value=0.0082 Score=70.84 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=62.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-CCceEEEecCCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-PNAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-~~~~~~~~d~~d 649 (1053)
.++++|+|.| +|++|+++++.|++.| .+|.+++|+.++.++..... .++..+.+|++|
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G--------------------~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd 235 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQG--------------------AKVVALTSNSDKITLEINGEDLPVKTLHWQVGQ 235 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC
Confidence 3568899999 6999999999999887 37888899877665433221 235678899999
Q ss_pred HHHHHHhhccccEEEecCCcc
Q 001559 650 HKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.+++.+.+.+.|++|++++..
T Consensus 236 ~~~v~~~l~~IDiLInnAGi~ 256 (406)
T PRK07424 236 EAALAELLEKVDILIINHGIN 256 (406)
T ss_pred HHHHHHHhCCCCEEEECCCcC
Confidence 999999899999999988653
No 286
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.68 E-value=0.0026 Score=74.35 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..++||+|+| +|++|+.+++.|.+++. .+|+.+.++...-+.+....+... ..|..+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-------------------~el~~l~s~~saG~~i~~~~~~l~--~~~~~~~ 94 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD-------------------FEITVMTADRKAGQSFGSVFPHLI--TQDLPNL 94 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC-------------------CeEEEEEChhhcCCCchhhCcccc--Cccccce
Confidence 3567999999 69999999999999863 477777765443333333333211 1222212
Q ss_pred HHHH-HhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 651 KSLC-KCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~-~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
+++. +.++++|+|+.++|......++.+ ++.|+.+||+|
T Consensus 95 ~~~~~~~~~~~DvVf~Alp~~~s~~i~~~-~~~g~~VIDlS 134 (381)
T PLN02968 95 VAVKDADFSDVDAVFCCLPHGTTQEIIKA-LPKDLKIVDLS 134 (381)
T ss_pred ecCCHHHhcCCCEEEEcCCHHHHHHHHHH-HhCCCEEEEcC
Confidence 2222 224789999999999877777776 47889999998
No 287
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.67 E-value=0.0073 Score=69.07 Aligned_cols=110 Identities=9% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---------Cc--eE
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---------NA--EA 642 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---------~~--~~ 642 (1053)
.++|.|||+|.||+.+|..++..| .+|.+.|++++.+++..+.+. +. ..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG--------------------~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 66 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG--------------------LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGA 66 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 468999999999999999999887 489999999876654332110 00 00
Q ss_pred EEecCCCHHHHHHhhccccEEEecCCcccc--HHHH---HHHHHhCCeEEEeeccChhHHHHHHHHH
Q 001559 643 VQLDVSDHKSLCKCISQVEIVISLLPASCH--VMVA---NACIEFKKHLVTASYIDDSMSKLDEKAK 704 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~--~~v~---~aci~~g~~~vD~sy~~~~~~~L~~~Ak 704 (1053)
..-.++-..++.+.++++|+||.++|-... ..+. .+....++ +++.+..+-...++.+.++
T Consensus 67 ~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la~~~~ 132 (321)
T PRK07066 67 SPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFYARAT 132 (321)
T ss_pred HHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHHHhcC
Confidence 000011123467888999999999997653 1222 22334444 5555443434445544443
No 288
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.67 E-value=0.004 Score=70.87 Aligned_cols=75 Identities=25% Similarity=0.269 Sum_probs=56.5
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.|||+|.+|++++..|++.| .+|.+++|+.. .++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G--------------------~~V~~~~r~~~----------------------~~~ 41 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG--------------------HRVRVWSRRSG----------------------LSL 41 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--------------------CEEEEEeCCCC----------------------CCH
Confidence 478999999999999999999887 37999999742 134
Q ss_pred HHhhccccEEEecCCccccHHHHHHH----HHhCCeEEEee
Q 001559 654 CKCISQVEIVISLLPASCHVMVANAC----IEFKKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~ac----i~~g~~~vD~s 690 (1053)
.+.++++|+||.++|......+.... +..++.+++++
T Consensus 42 ~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 42 AAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 56678999999999976444444332 33456677765
No 289
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.66 E-value=0.011 Score=70.18 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=66.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.|||+|.+|.++|..|++.| .+|.++|++.++.+++...... .... +.+.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G--------------------~~V~~~D~~~~~v~~l~~g~~~--~~e~---~l~~~ 57 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQ--------------------KQVIGVDINQHAVDTINRGEIH--IVEP---DLDMV 57 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCC--------------------CEEEEEeCCHHHHHHHHCCCCC--cCCC---CHHHH
Confidence 478999999999999999999987 3899999999998876543211 1000 11111
Q ss_pred -HH-----------hhccccEEEecCCccc----------cHHHH---HHHHHhCCeEEEeeccChh-HHHHHHHHHHc
Q 001559 654 -CK-----------CISQVEIVISLLPASC----------HVMVA---NACIEFKKHLVTASYIDDS-MSKLDEKAKGA 706 (1053)
Q Consensus 654 -~~-----------~i~~~DvVI~~~p~~~----------~~~v~---~aci~~g~~~vD~sy~~~~-~~~L~~~Ak~~ 706 (1053)
.+ .++++|+||-|+|... ...+. ...++.|+.+|+.|.+++. ++++....++.
T Consensus 58 l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 58 VKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred HHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11 1347999999999752 11111 1223456667777665443 33443333333
No 290
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.0081 Score=66.40 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=60.9
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++...+ .++..+.+|++|
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~ 60 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG--------------------WRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD 60 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC
Confidence 4689999 6999999999999987 37899999988877665432 346778899999
Q ss_pred HHHHHHhhc-------cccEEEecCCcc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+++.++++ ..|+||++++..
T Consensus 61 ~~~~~~~~~~i~~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 61 YSQLTALAQACEEKWGGIDVIVNNAGVA 88 (270)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 888776664 579999998753
No 291
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.65 E-value=0.006 Score=66.79 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=59.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~~~d 646 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+++|+..+.+++.+.+ .++..+.+|
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG--------------------YRVAVADINSEKAANVAQEINAEYGEGMAYGFGAD 61 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEcc
Confidence 35799999 6999999999999987 37889999987766655432 246788999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++..++. ..|+||++++..
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~id~vv~~ag~~ 92 (259)
T PRK12384 62 ATSEQSVLALSRGVDEIFGRVDLLVYNAGIA 92 (259)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 999887776654 469999998643
No 292
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.0068 Score=66.54 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=60.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++|+|.| +|++|+.+++.|++.+ .+|.+++|+..+.+++.+.+ .++..+.+|++|
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g--------------------~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 61 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG--------------------AQLVLAARNETRLASLAQELADHGGEALVVPTDVSD 61 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence 5799999 6999999999999887 37999999987776655432 246678899999
Q ss_pred HHHHHHhhc-------cccEEEecCCcc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+++.+++. ..|+||+++...
T Consensus 62 ~~~~~~~~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 62 AEACERLIEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 988877665 579999998653
No 293
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=96.65 E-value=0.0098 Score=66.67 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=55.9
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH--HHHHHHHh--cCCCceEEEecCCCH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIE--GIPNAEAVQLDVSDH 650 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~--~~~~~~~~~~d~~d~ 650 (1053)
+|+|.| +|++|+.+++.|.+.+. +.+|.+.+|.. .+.+.+.. ..++++++.+|++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 62 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP------------------DAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDR 62 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC------------------CCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCH
Confidence 589999 69999999999988752 13677777631 12222221 123577888999999
Q ss_pred HHHHHhhcc--ccEEEecCCc
Q 001559 651 KSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~~--~DvVI~~~p~ 669 (1053)
+++.+++++ +|+||+++..
T Consensus 63 ~~~~~~~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 63 ELVSRLFTEHQPDAVVHFAAE 83 (317)
T ss_pred HHHHHHHhhcCCCEEEEcccc
Confidence 999999887 8999999964
No 294
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.64 E-value=0.0085 Score=65.49 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=62.0
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
...++++|.| +|++|+.+++.|++.| .+|.+++|+.+.++++.+.+ .++..+.+|
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 68 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAG--------------------AHVLVNGRNAATLEAAVAALRAAGGAAEALAFD 68 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC--------------------CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 4578899999 6999999999999887 38999999988776665432 246788999
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++++ .|+||++++.
T Consensus 69 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 69 IADEEAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 9998887766553 5899999865
No 295
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.64 E-value=0.016 Score=63.50 Aligned_cols=131 Identities=19% Similarity=0.270 Sum_probs=81.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-----HHHHHHhcCCCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-----DAEEVIEGIPNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-----~a~~l~~~~~~~~~~~~d~ 647 (1053)
++||+|.| +|+||+.+++.+.+.+++ .-+..++|... .+.+++. .. ...+.+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~------------------~L~aa~~~~~~~~~g~d~ge~~g-~~---~~gv~v 59 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL------------------ELVAAFDRPGSLSLGSDAGELAG-LG---LLGVPV 59 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc------------------eEEEEEecCCccccccchhhhcc-cc---ccCcee
Confidence 57899999 599999999999887643 13556676543 2233321 11 111122
Q ss_pred CCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEE-ee-ccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHH
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVT-AS-YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMA 725 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD-~s-y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla 725 (1053)
++ ++.....++|++|+.+-+......++.|+++++.+|- .+ +.+++...|.+.+++.++.+-+ -|.=|+. +.
T Consensus 60 ~~--~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~--NfSiGvn--ll 133 (266)
T COG0289 60 TD--DLLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAP--NFSLGVN--LL 133 (266)
T ss_pred ec--chhhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEec--cchHHHH--HH
Confidence 22 2555667899999999776667788899999987553 33 5556666787777775544444 4444543 33
Q ss_pred HHHHHHh
Q 001559 726 MKMINHA 732 (1053)
Q Consensus 726 ~~~i~~~ 732 (1053)
++++.++
T Consensus 134 ~~l~~~a 140 (266)
T COG0289 134 FKLAEQA 140 (266)
T ss_pred HHHHHHH
Confidence 4445444
No 296
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.64 E-value=0.0076 Score=67.30 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---HHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|+ +++|+++|+.|++.| .+|.+++|+. ++++++.+.++....+++|
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G--------------------~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~D 63 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQG--------------------AELAFTYLNEALKKRVEPIAQELGSDYVYELD 63 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCC--------------------CEEEEEecCHHHHHHHHHHHHhcCCceEEEec
Confidence 3578999996 599999999999987 3788889884 3455555554432568899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 64 v~d~~~v~~~~~~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 64 VSKPEHFKSLAESLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 999988766554 36999999875
No 297
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.63 E-value=0.0036 Score=66.05 Aligned_cols=125 Identities=18% Similarity=0.278 Sum_probs=77.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce----------EE-
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE----------AV- 643 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~----------~~- 643 (1053)
|+|.|+|+|++|.+.|-.|++.| .+|..+|.+.++.+.+.+....+. ..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--------------------~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~ 60 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--------------------HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS 60 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--------------------SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCC--------------------CEEEEEeCChHHHHHHhhccccccccchhhhhccccc
Confidence 68999999999999999999998 389999999999998876532110 00
Q ss_pred --EecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 644 --QLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 644 --~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
.+-. ..+..+.++++|+++-|+|..... ..-.|++|.......+. ...+.|..++...=+.||..
T Consensus 61 ~~~l~~--t~~~~~ai~~adv~~I~VpTP~~~----------~~~~Dls~v~~a~~~i~-~~l~~~~lvV~~STvppGtt 127 (185)
T PF03721_consen 61 AGRLRA--TTDIEEAIKDADVVFICVPTPSDE----------DGSPDLSYVESAIESIA-PVLRPGDLVVIESTVPPGTT 127 (185)
T ss_dssp TTSEEE--ESEHHHHHHH-SEEEE----EBET----------TTSBETHHHHHHHHHHH-HHHCSCEEEEESSSSSTTHH
T ss_pred cccchh--hhhhhhhhhccceEEEecCCCccc----------cCCccHHHHHHHHHHHH-HHHhhcceEEEccEEEEeee
Confidence 0001 122345577889999999866542 23356666554555554 34455888899999999988
Q ss_pred HHHHHHHHHHh
Q 001559 722 HMMAMKMINHA 732 (1053)
Q Consensus 722 ~mla~~~i~~~ 732 (1053)
.=+...++++.
T Consensus 128 ~~~~~~ile~~ 138 (185)
T PF03721_consen 128 EELLKPILEKR 138 (185)
T ss_dssp HHHHHHHHHHH
T ss_pred hHhhhhhhhhh
Confidence 85555555543
No 298
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.63 E-value=0.0061 Score=66.62 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=57.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++ . ....++..+++|++|.+
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g--------------------~~v~~~~r~~~~--~--~~~~~~~~~~~D~~~~~ 60 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAG--------------------ATVVVCGRRAPE--T--VDGRPAEFHAADVRDPD 60 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCChhh--h--hcCCceEEEEccCCCHH
Confidence 467899999 7999999999999987 378999998754 1 11234678899999988
Q ss_pred HHHHhhcc-------ccEEEecCCc
Q 001559 652 SLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++.+++++ .|+||++++.
T Consensus 61 ~~~~~~~~~~~~~~~id~vi~~ag~ 85 (252)
T PRK07856 61 QVAALVDAIVERHGRLDVLVNNAGG 85 (252)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 88777654 4999999864
No 299
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.63 E-value=0.0073 Score=66.57 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCc---hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH---HHHHHHhcCCCceEEEe
Q 001559 572 KGTSSVLIIGAG---RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK---DAEEVIEGIPNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiGaG---~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~---~a~~l~~~~~~~~~~~~ 645 (1053)
.+.+.++|.|++ ++|+++|+.|++.| .+|.+++|+.+ .++++.+.++.+.++.+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G--------------------~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 67 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG--------------------AELAVTYLNDKARPYVEPLAEELDAPIFLPL 67 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC--------------------CEEEEEeCChhhHHHHHHHHHhhccceEEec
Confidence 346789999953 89999999999987 37888888853 34555555555567889
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.+++. ..|++||+++.
T Consensus 68 D~~~~~~v~~~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 68 DVREPGQLEAVFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCCEEEEcCcc
Confidence 9999888766543 36999999864
No 300
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.63 E-value=0.0052 Score=71.89 Aligned_cols=94 Identities=10% Similarity=0.076 Sum_probs=69.2
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCC-CCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----Cc-eEEEec
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFG-SPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NA-EAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~-~~~~~d 646 (1053)
..++++|||+|..|+..++.++... .+ .+|.|++|++++++++++.+. ++ ++..+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i------------------~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~- 214 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGI------------------DTIKIKGRGQKSLDSFATWVAETYPQITNVEVV- 214 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCc------------------cEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe-
Confidence 4578999999999999999987632 12 389999999999998887653 22 23222
Q ss_pred CCCHHHHHHhhccccEEEecCCccc-----cHHHHHHHHHhCCeEEEe
Q 001559 647 VSDHKSLCKCISQVEIVISLLPASC-----HVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~~-----~~~v~~aci~~g~~~vD~ 689 (1053)
++..++++++|||+.||+... .+-+....++.|+|+.-+
T Consensus 215 ----~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~i 258 (379)
T PRK06199 215 ----DSIEEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMP 258 (379)
T ss_pred ----CCHHHHHcCCCEEEEccCCCCCCCCcCcEecHHHcCCCcEEecC
Confidence 346788899999999997432 133345578899998644
No 301
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.011 Score=64.85 Aligned_cols=72 Identities=25% Similarity=0.200 Sum_probs=65.1
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++|+|+| +|.+|+.+++.|.+.+ .+|.++.|+.+++..+. .+++....|..+...+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~--------------------~~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l 57 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG--------------------HEVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSL 57 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC--------------------CEEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHH
Confidence 5799999 7999999999999987 38999999999988876 6788999999999999
Q ss_pred HHhhccccEEEecCCc
Q 001559 654 CKCISQVEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~ 669 (1053)
...++++|.++.+.+.
T Consensus 58 ~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 58 VAGAKGVDGVLLISGL 73 (275)
T ss_pred HHHhccccEEEEEecc
Confidence 9999999999999884
No 302
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.62 E-value=0.0087 Score=66.42 Aligned_cols=195 Identities=17% Similarity=0.217 Sum_probs=118.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH--
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS-- 652 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~-- 652 (1053)
-.|++||.|-+|+-..-.+.++-.+ ...+++|+|-..+..+.+.+. ++++++-.+ +.++
T Consensus 14 gpIimIGfGSigrgTLPLierhf~~----------------d~~~~~viDp~ek~~k~~~~~--girfV~e~i-t~~Nyk 74 (481)
T COG5310 14 GPIIMIGFGSIGRGTLPLIERHFKF----------------DRSRMVVIDPREKDRKILDER--GIRFVQEAI-TRDNYK 74 (481)
T ss_pred CcEEEEeecccccccchhHHHhcCC----------------ChhheEEechhHHHHHHHHhh--hhHHHHHhc-ChhhHH
Confidence 3599999999999998888776543 134788888766444444332 344433333 2333
Q ss_pred --HHHhhcc---ccEEEecCCccccHHHHHHHHHhCCeEEEeec-------cChhHH------------HHHHHHHHc-C
Q 001559 653 --LCKCISQ---VEIVISLLPASCHVMVANACIEFKKHLVTASY-------IDDSMS------------KLDEKAKGA-G 707 (1053)
Q Consensus 653 --l~~~i~~---~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy-------~~~~~~------------~L~~~Ak~~-G 707 (1053)
|..++++ --.+||+.=..-...+++-|-+.|+.|||.+. .+..+. .+.++.++- |
T Consensus 75 ~vL~pll~~~~gqgf~vnLSvd~~s~Dlmr~crk~~vLYidTvVEpW~gfyfDa~adn~artnyaLRet~lrEk~r~pgg 154 (481)
T COG5310 75 DVLKPLLKGVGGQGFCVNLSVDTSSLDLMRLCRKHGVLYIDTVVEPWLGFYFDAQADNAARTNYALRETVLREKRRNPGG 154 (481)
T ss_pred HHHHHHhhcCCCceEEEEeEeccchhHHHHHHHHcCeEEEeeeeccccccchhhhhhhhhhhhHHHHHHHHHHhccCCCC
Confidence 3445554 56777775433446889999999999999973 221111 233334443 5
Q ss_pred CeEEecCCCChhHHHHHHHHHHHHhhhc---------------------cCceEEEEeec---cCCCCCCCCCCcccccc
Q 001559 708 ITILGEMGLDPGIDHMMAMKMINHAHVR---------------------KGKIKSFTSYC---GGLPSPAAANNPLAYKF 763 (1053)
Q Consensus 708 v~~l~g~G~dPGi~~mla~~~i~~~~~~---------------------~~~v~sf~~~~---Gg~p~p~~~~~pl~yk~ 763 (1053)
-+.+..||..||+...++.+++=.+... .-.|+.+++-- -+.+.| .++-++-=
T Consensus 155 ~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~ep~~ddr~gwAkLmkK~GVkgiHiaeRdTqra~~P---kp~n~fwn 231 (481)
T COG5310 155 PTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEEPAQDDREGWAKLMKKAGVKGIHIAERDTQRAKKP---KPFNGFWN 231 (481)
T ss_pred CeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccCCcchhhHHHHHHHHHcCCceEEEEeeccccCCCC---CCCccccc
Confidence 6788999999999988888844222111 01133333211 111222 22333333
Q ss_pred ccCHHHHHHhccCCceEEECCEEEEecC
Q 001559 764 SWSPAGAIRAGRNPAIYLFNGKTVQVDG 791 (1053)
Q Consensus 764 swsp~~~l~~~~~pa~~~~~G~~~~v~~ 791 (1053)
+||.++.+.+...|++...+---...|.
T Consensus 232 tWsveGfi~EG~qPaElgWGtHenw~pk 259 (481)
T COG5310 232 TWSVEGFITEGLQPAELGWGTHENWMPK 259 (481)
T ss_pred ceeeeeeccCCCChhhhccCCccccCCc
Confidence 8999999999999998877665555554
No 303
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.0069 Score=63.79 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=66.1
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+-.|||-| +-++|..+|+.+.+.| -+|.|++|+.+++++.....|.+....+|+.|.++
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elg--------------------N~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~ 64 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELG--------------------NTVIICGRNEERLAEAKAENPEIHTEVCDVADRDS 64 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhC--------------------CEEEEecCcHHHHHHHHhcCcchheeeecccchhh
Confidence 34589987 7899999999999987 38999999999999999999999999999999887
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.++++. ..+++||+++.-
T Consensus 65 ~~~lvewLkk~~P~lNvliNNAGIq 89 (245)
T COG3967 65 RRELVEWLKKEYPNLNVLINNAGIQ 89 (245)
T ss_pred HHHHHHHHHhhCCchheeeeccccc
Confidence 666554 369999999864
No 304
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.0062 Score=66.97 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=60.5
Q ss_pred CCCCeEEEEcC-c-hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CC--CceEE
Q 001559 572 KGTSSVLIIGA-G-RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IP--NAEAV 643 (1053)
Q Consensus 572 ~~~~~VlIiGa-G-~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~--~~~~~ 643 (1053)
.+.++++|.|+ | ++|+.+++.|++.| .+|.+.+|+.++.++..+. ++ ++..+
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEG--------------------ARVVISDIHERRLGETADELAAELGLGRVEAV 74 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEE
Confidence 34678999995 6 79999999999987 3788999988776655443 22 36678
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+|+++.+++.++++ ..|+||++++.
T Consensus 75 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 75 VCDVTSEAQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 899999887776654 46999999874
No 305
>PLN02240 UDP-glucose 4-epimerase
Probab=96.61 E-value=0.012 Score=67.55 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=57.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH----HHHHHHhc----CCCceEE
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK----DAEEVIEG----IPNAEAV 643 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~----~a~~l~~~----~~~~~~~ 643 (1053)
++++|+|.| +|++|+.+++.|++.+ .+|++.+|... ..+++... .++++.+
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG--------------------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH 63 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEE
Confidence 457899999 6999999999999887 37888876421 12222221 1357788
Q ss_pred EecCCCHHHHHHhhc--cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS--QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~--~~DvVI~~~p~ 669 (1053)
.+|++|.+.+.++++ ++|+||+++..
T Consensus 64 ~~D~~~~~~l~~~~~~~~~d~vih~a~~ 91 (352)
T PLN02240 64 KVDLRDKEALEKVFASTRFDAVIHFAGL 91 (352)
T ss_pred ecCcCCHHHHHHHHHhCCCCEEEEcccc
Confidence 899999999988876 58999999864
No 306
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.61 E-value=0.0076 Score=66.11 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=58.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHH---hcC-CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI---EGI-PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~---~~~-~~~~~~~~d 646 (1053)
.+.++|+|.| +|++|+.+++.|++.| .+|.+++|+ ++.+++. ... .++..+.+|
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D 71 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAG--------------------ADIIITTHG-TNWDETRRLIEKEGRKVTFVQVD 71 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcC
Confidence 3468899999 6999999999999987 378888887 3333333 222 246788999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++|++++.
T Consensus 72 ~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 72 LTKPESAEKVVKEALEEFGKIDILVNNAGT 101 (258)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 999888777665 46999999865
No 307
>PRK12746 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.008 Score=65.55 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=58.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE-EECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV-ASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v-~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.++++|.| +|++|+.+++.|+++| .+|.+ ..|+.++++++.+.+ .++..+.+|+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G--------------------~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 65 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDG--------------------ALVAIHYGRNKQAADETIREIESNGGKAFLIEADL 65 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 47899999 7999999999999987 25655 478877766555433 2466788999
Q ss_pred CCHHHHHHhhc-------------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||+++..
T Consensus 66 ~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 66 NSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred CCHHHHHHHHHHHHHHhccccCCCCccEEEECCCC
Confidence 99988876655 47999999864
No 308
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.60 E-value=0.015 Score=65.14 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=64.4
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.+++..|.+.+ + ...|.+++|+.++++.+.+ ..-+.. ..+ ..
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g-~-----------------~~~v~~~d~~~~~~~~~~~-~g~~~~----~~~---~~ 54 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKG-L-----------------ISKVYGYDHNELHLKKALE-LGLVDE----IVS---FE 54 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcC-C-----------------CCEEEEEcCCHHHHHHHHH-CCCCcc----cCC---HH
Confidence 47999999999999999999876 2 1378889999888776543 221110 112 23
Q ss_pred HhhccccEEEecCCccccHHHHHHH--HHhCCeEEEeeccChh
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC--IEFKKHLVTASYIDDS 695 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac--i~~g~~~vD~sy~~~~ 695 (1053)
++. ++|+||-|+|......+.... +..++.++|++.....
T Consensus 55 ~~~-~aD~Vilavp~~~~~~~~~~l~~l~~~~iv~d~gs~k~~ 96 (275)
T PRK08507 55 ELK-KCDVIFLAIPVDAIIEILPKLLDIKENTTIIDLGSTKAK 96 (275)
T ss_pred HHh-cCCEEEEeCcHHHHHHHHHHHhccCCCCEEEECccchHH
Confidence 333 499999999987655544433 4567788998765433
No 309
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.60 E-value=0.0052 Score=70.81 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++|+|+| +|++|+.+++.|.+++ + +..++..+.+..+..+.+. +.+.+....|..+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~-h----------------p~~~l~~l~s~~~~g~~l~--~~g~~i~v~d~~~--- 58 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERN-F----------------PVDKLRLLASARSAGKELS--FKGKELKVEDLTT--- 58 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-C----------------CcceEEEEEccccCCCeee--eCCceeEEeeCCH---
Confidence 46899999 7999999999999864 1 0135555555433333321 2223333344422
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
..++++|+||.|+|.+....++...+++|+.+||+|
T Consensus 59 --~~~~~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS 94 (334)
T PRK14874 59 --FDFSGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNS 94 (334)
T ss_pred --HHHcCCCEEEECCChHHHHHHHHHHHhCCCEEEECC
Confidence 123689999999999888888888889999999987
No 310
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.59 E-value=0.012 Score=72.37 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=85.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+-+++|+|+|.+|+.+++.|.+++ .++.++|.|+++++++.+. +..++..|.+|++.|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g--------------------~~vvvId~d~~~~~~~~~~--g~~~i~GD~~~~~~L 474 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG--------------------IPLVVIETSRTRVDELRER--GIRAVLGNAANEEIM 474 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC--------------------CCEEEEECCHHHHHHHHHC--CCeEEEcCCCCHHHH
Confidence 356999999999999999999887 3799999999999888753 578999999999988
Q ss_pred H-HhhccccEEEecCCccccH-HHHHHHHH--hCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHH
Q 001559 654 C-KCISQVEIVISLLPASCHV-MVANACIE--FKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMI 729 (1053)
Q Consensus 654 ~-~~i~~~DvVI~~~p~~~~~-~v~~aci~--~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i 729 (1053)
+ .-++++|.|+-+++..... .+...+.+ ..++++--...+.+. +..++.|+..+. .| ....+.++.
T Consensus 475 ~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~----~~l~~~Gad~vv----~p--~~~~a~~i~ 544 (558)
T PRK10669 475 QLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEV----AYITERGANQVV----MG--EREIARTML 544 (558)
T ss_pred HhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHcCCCEEE----Ch--HHHHHHHHH
Confidence 8 4578999999888764432 23322222 223444333332222 233567876554 22 234555555
Q ss_pred HHh
Q 001559 730 NHA 732 (1053)
Q Consensus 730 ~~~ 732 (1053)
+.+
T Consensus 545 ~~l 547 (558)
T PRK10669 545 ELL 547 (558)
T ss_pred HHh
Confidence 544
No 311
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.59 E-value=0.008 Score=66.28 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=62.5
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+ .++..+.+|
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G--------------------~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAG--------------------ATIVFNDINQELVDKGLAAYRELGIEAHGYVCD 67 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 3567899999 6999999999999987 37888899988777665443 246778999
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++.+ .|+||++++.
T Consensus 68 l~~~~~~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 68 VTDEDGVQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 9999887766643 6999999875
No 312
>PRK09242 tropinone reductase; Provisional
Probab=96.58 E-value=0.0082 Score=65.73 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=61.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~~ 645 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ + ++..+.+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLG--------------------ADVLIVARDADALAQARDELAEEFPEREVHGLAA 67 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 467899999 6999999999999987 37999999988887766542 2 3566788
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.+++. ..|+||++++.
T Consensus 68 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 68 DVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9998877665554 46999999875
No 313
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=96.58 E-value=0.013 Score=69.23 Aligned_cols=114 Identities=14% Similarity=0.162 Sum_probs=63.9
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCccc-ccccccccc-cCCCccEEEEEEC----CHHHHH----HHHhcCCCceEEEe
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQM-QKTCMETDF-EWQNDIRVLVASL----YLKDAE----EVIEGIPNAEAVQL 645 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~-~~~~~~~~~-~~~~~~~v~v~~r----~~~~a~----~l~~~~~~~~~~~~ 645 (1053)
+|+|+|+|++|..+++.|+..| +..+. -...+.|++ .+.+|+.-...=| ...|++ .+.+..|.+.+...
T Consensus 1 kVlvVGaGGlGcE~lKnLal~G-v~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMG-VGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 5899999999999999999887 20000 001111111 2222221111000 012333 33344566554433
Q ss_pred cCC-CHHH---H-HHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 646 DVS-DHKS---L-CKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 646 d~~-d~~~---l-~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
+.. +.+. + .+.+++.|+||+|+... ....+.+.|...++.+++..
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g 130 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESG 130 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 321 2211 2 36678899999998543 34567889999999999975
No 314
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.58 E-value=0.013 Score=65.70 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=55.5
Q ss_pred EEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceE----EEe
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEA----VQL 645 (1053)
Q Consensus 577 VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~----~~~ 645 (1053)
|||-| +|.+|+.++++|++.+. .++.+.|++..+.-++...+ + +++. +..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-------------------~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-------------------KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--------------------SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCC-------------------CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceee
Confidence 68888 79999999999999863 38999999998887777666 3 3433 367
Q ss_pred cCCCHHHHHHhhc--cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS--QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~--~~DvVI~~~p~ 669 (1053)
|++|.+.+.++++ +.|+|++++-.
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHaAA~ 87 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHAAAL 87 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE----
T ss_pred cccCHHHHHHHHhhcCCCEEEEChhc
Confidence 9999999999999 89999999865
No 315
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.58 E-value=0.0073 Score=65.10 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=60.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~ 648 (1053)
+.++|+|.| +|++|..+++.|++.| ..|.+.+|+.++++++...+ .++..+.+|++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~ 63 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG--------------------AQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVS 63 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCC
Confidence 357899999 6999999999999887 37999999988887664432 34678889999
Q ss_pred CHHHHHHhhcc-------ccEEEecCCc
Q 001559 649 DHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
|.+++.+++++ .|.+|++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~id~ii~~ag~ 91 (238)
T PRK05786 64 STESARNVIEKAAKVLNAIDGLVVTVGG 91 (238)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 98888766543 4888888764
No 316
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.58 E-value=0.006 Score=66.27 Aligned_cols=76 Identities=24% Similarity=0.283 Sum_probs=58.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE-EECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV-ASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v-~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+ ..|+.++.+++.+.+ .++..+.+|+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g--------------------~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG--------------------YDIAVNYARSRKAAEETAEEIEALGRKALAVKANV 63 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 46899999 7999999999999987 25544 578877776655432 2467788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 64 GDVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99988877666 36999999864
No 317
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.58 E-value=0.014 Score=66.34 Aligned_cols=120 Identities=22% Similarity=0.194 Sum_probs=70.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----------CCCce---
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----------IPNAE--- 641 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----------~~~~~--- 641 (1053)
++|.|||+|.+|.+++..|++.| .+|+++||+.+.+++..+. .....
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G--------------------~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~ 62 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG--------------------HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA 62 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC--------------------CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhh
Confidence 57999999999999999999987 3899999998766653211 00000
Q ss_pred --E--EEecCCCHHHHHHhhccccEEEecCCcccc--HHHHH---HHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEe
Q 001559 642 --A--VQLDVSDHKSLCKCISQVEIVISLLPASCH--VMVAN---ACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 642 --~--~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~--~~v~~---aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
. -.+.. ..++.+.++++|+||.++|-... ..+.. .+.. +..+++.+-.......+.+.++..+ .++.
T Consensus 63 ~~~~~~~i~~--~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~-~~~ii~ssts~~~~~~la~~~~~~~-~~~~ 138 (308)
T PRK06129 63 PDAVLARIRV--TDSLADAVADADYVQESAPENLELKRALFAELDALAP-PHAILASSTSALLASAFTEHLAGRE-RCLV 138 (308)
T ss_pred HHHHhcCeEE--ECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCC-CcceEEEeCCCCCHHHHHHhcCCcc-cEEE
Confidence 0 00011 13466778899999999997642 22222 2222 2334444433334445654444444 3444
Q ss_pred cCCCCh
Q 001559 713 EMGLDP 718 (1053)
Q Consensus 713 g~G~dP 718 (1053)
..-+.|
T Consensus 139 ~hp~~p 144 (308)
T PRK06129 139 AHPINP 144 (308)
T ss_pred EecCCC
Confidence 444544
No 318
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.57 E-value=0.0096 Score=65.47 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=58.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCCCceEEEecCCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
.++++++|.| +|++|+.+++.|++.| .+|.+++|+. +..+.. ...+ ...+.+|++|
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G--------------------~~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~ 69 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKG--------------------AKVIGLTHSKINNSESN-DESP-NEWIKWECGK 69 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCC--------------------CEEEEEECCchhhhhhh-ccCC-CeEEEeeCCC
Confidence 3467899999 6999999999999987 3788888876 332221 1112 3567899999
Q ss_pred HHHHHHhhccccEEEecCCc
Q 001559 650 HKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.+++.+.+.+.|++||+++.
T Consensus 70 ~~~~~~~~~~iDilVnnAG~ 89 (245)
T PRK12367 70 EESLDKQLASLDVLILNHGI 89 (245)
T ss_pred HHHHHHhcCCCCEEEECCcc
Confidence 99998888899999999875
No 319
>PRK06914 short chain dehydrogenase; Provisional
Probab=96.57 E-value=0.0075 Score=66.91 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=58.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~~~d 646 (1053)
++.++|.| +|++|+.+++.|++.| ..|.+++|+.++++++.+.. .++.++.+|
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 62 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKG--------------------YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLD 62 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecC
Confidence 35689999 6999999999999987 37888999988776665431 246788899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.+ +. ..|+||++++.
T Consensus 63 ~~d~~~~~~-~~~~~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 63 VTDQNSIHN-FQLVLKEIGRIDLLVNNAGY 91 (280)
T ss_pred CCCHHHHHH-HHHHHHhcCCeeEEEECCcc
Confidence 999887765 33 46999999864
No 320
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.57 E-value=0.01 Score=64.45 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=57.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC-CCceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI-PNAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~-~~~~~~~~d~~d 649 (1053)
+.++|+|.| +|++|+++++.|++.| .+|.+.+|+.. ++.+..... .++..+.+|+++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~ 63 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAG--------------------ADIVGAGRSEPSETQQQVEALGRRFLSLTADLSD 63 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEcCchHHHHHHHHHhcCCceEEEECCCCC
Confidence 468899999 6999999999999987 37888888752 222222333 246788999999
Q ss_pred HHHHHHhhc-------cccEEEecCCcc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+++.++++ ..|++|++++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 64 IEAIKALVDSAVEEFGHIDILVNNAGII 91 (248)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 888775543 479999998653
No 321
>PRK04148 hypothetical protein; Provisional
Probab=96.56 E-value=0.019 Score=57.30 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=69.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.++|++||+| .|..+|..|++.| .+|+.+|.+++..+...+. .+.++..|+.+++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G--------------------~~ViaIDi~~~aV~~a~~~--~~~~v~dDlf~p~- 71 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESG--------------------FDVIVIDINEKAVEKAKKL--GLNAFVDDLFNPN- 71 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHh--CCeEEECcCCCCC-
Confidence 45789999999 8999999999887 3899999999877766554 3678888887653
Q ss_pred HHHhhccccEEEecCCc-cccHHHHHHHHHhCCeEE
Q 001559 653 LCKCISQVEIVISLLPA-SCHVMVANACIEFKKHLV 687 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~-~~~~~v~~aci~~g~~~v 687 (1053)
-++-+++|+|.++=|+ .+++++.+-+-+-|+.++
T Consensus 72 -~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 72 -LEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred -HHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 2556789999999865 467777777766666543
No 322
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.56 E-value=0.0085 Score=71.63 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCC--CceEEEecCCC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIP--NAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~--~~~~~~~d~~d 649 (1053)
+.++|+|+|+|.+|.++|+.|++.| ..|++++++. +.+++..+.+. +++++..|..+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--------------------~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--------------------AKVILTDEKEEDQLKEALEELGELGIELVLGEYPE 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch
Confidence 4688999999999999999999998 3899999974 33333333222 35666666543
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEE
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVT 688 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD 688 (1053)
+...++|+||.++......+...+|.+.|..++.
T Consensus 64 -----~~~~~~d~vv~~~g~~~~~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGVPLDSPPVVQAHKKGIEVIG 97 (450)
T ss_pred -----hHhhcCCEEEECCCCCCCCHHHHHHHHCCCcEEe
Confidence 3456799999998776655666677777766543
No 323
>PLN02928 oxidoreductase family protein
Probab=96.56 E-value=0.0053 Score=71.04 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCC
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~ 648 (1053)
....++|+|||+|.+|+.+|+.|...| .+|.+++|+..+.......++. +........
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG--------------------~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFG--------------------VKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG 215 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCC--------------------CEEEEECCCCChhhhhhhccccccccccccccC
Confidence 355789999999999999999998876 4899999874332211100110 000000011
Q ss_pred CHHHHHHhhccccEEEecCCcccc-----HHHHHHHHHhCCeEEEee
Q 001559 649 DHKSLCKCISQVEIVISLLPASCH-----VMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~-----~~v~~aci~~g~~~vD~s 690 (1053)
...+|.++++++|+|+.++|..-. ..-..++++.|..+|+++
T Consensus 216 ~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 216 GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 345789999999999999996532 112234456666677665
No 324
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.56 E-value=0.0068 Score=66.35 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=61.3
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
..+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++.+++...+ .++..+.+|
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G--------------------~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 68 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAG--------------------ASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 3468899999 7999999999999987 37888999888776665432 245678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 69 ~~~~~~i~~~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 69 ITSEQELSALADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 999988776654 36999999864
No 325
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.54 E-value=0.0095 Score=66.38 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---HHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|+ +++|+++|+.|++.| .+|.+..|+. ++++++.+.+.....+++|
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G--------------------~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~D 68 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAG--------------------AELAFTYQGDALKKRVEPLAAELGAFVAGHCD 68 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCC--------------------CEEEEEcCchHHHHHHHHHHHhcCCceEEecC
Confidence 4578999996 699999999999988 3787877763 4556666665555678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.++++ ..|++||+++..
T Consensus 69 l~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~ 99 (272)
T PRK08159 69 VTDEASIDAVFETLEKKWGKLDFVVHAIGFS 99 (272)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEECCccc
Confidence 999888776654 369999998753
No 326
>PRK07775 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.0095 Score=66.19 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=60.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.++.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++...+ .++..+.+|+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 68 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAG--------------------FPVALGARRVEKCEELVDKIRADGGEAVAFPLDV 68 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 456899999 6999999999999987 37888899887776654432 2466778999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 69 TDPDSVKSFVAQAEEALGEIEVLVSGAGD 97 (274)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 99988877665 46999999864
No 327
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.01 Score=64.88 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CCCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IPNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~~~~~~~~d 646 (1053)
.+.+.++|.| +|++|+.+++.|++.| .+|.+.+|+.++. ++.+. ..++.++.+|
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G--------------------~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D 63 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG--------------------AIPVIFGRSAPDD-EFAEELRALQPRAEFVQVD 63 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC--------------------CcEEEEcCChhhH-HHHHHHHhcCCceEEEEcc
Confidence 4467899999 6999999999999987 3688888887655 33322 2357789999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.+++.++++ ..|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 64 LTDDAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 999988877665 46999999874
No 328
>PLN02583 cinnamoyl-CoA reductase
Probab=96.52 E-value=0.011 Score=66.63 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--HHHHHHhcC----CCceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--DAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--~a~~l~~~~----~~~~~~~~ 645 (1053)
++++|+|.| +|++|+.+++.|++.| .+|.++.|+.+ +..+....+ .+++.+.+
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G--------------------~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~ 64 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG--------------------YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDV 64 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC--------------------CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEe
Confidence 457899999 6999999999999987 37888888532 332232322 24778889
Q ss_pred cCCCHHHHHHhhccccEEEecCC
Q 001559 646 DVSDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p 668 (1053)
|++|.+.+.+.+.++|.|+++.+
T Consensus 65 Dl~d~~~~~~~l~~~d~v~~~~~ 87 (297)
T PLN02583 65 DPLDYHSILDALKGCSGLFCCFD 87 (297)
T ss_pred cCCCHHHHHHHHcCCCEEEEeCc
Confidence 99999999999999999998653
No 329
>PRK12742 oxidoreductase; Provisional
Probab=96.52 E-value=0.011 Score=63.64 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=58.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcCCCceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.++|+|.| +|++|+.+++.|++.| .+|.+..+ +.++++++.... ++..+.+|++|.
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G--------------------~~v~~~~~~~~~~~~~l~~~~-~~~~~~~D~~~~ 63 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDG--------------------ANVRFTYAGSKDAAERLAQET-GATAVQTDSADR 63 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEecCCCHHHHHHHHHHh-CCeEEecCCCCH
Confidence 357899999 6999999999999887 26666544 667777776654 356778999998
Q ss_pred HHHHHhhcc---ccEEEecCCc
Q 001559 651 KSLCKCISQ---VEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~~---~DvVI~~~p~ 669 (1053)
+++.+.+.. .|++|++++.
T Consensus 64 ~~~~~~~~~~~~id~li~~ag~ 85 (237)
T PRK12742 64 DAVIDVVRKSGALDILVVNAGI 85 (237)
T ss_pred HHHHHHHHHhCCCcEEEECCCC
Confidence 888776654 7999999865
No 330
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.52 E-value=0.011 Score=63.48 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=59.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+++|+.+.++++... +++.+.+|++|.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G--------------------~~v~~~~r~~~~~~~~~~~--~~~~~~~D~~~~~~ 58 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADG--------------------WRVIATARDAAALAALQAL--GAEALALDVADPAS 58 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHhc--cceEEEecCCCHHH
Confidence 46789998 7999999999999877 3789999998888776543 46788999999888
Q ss_pred HHHhh---c--cccEEEecCCc
Q 001559 653 LCKCI---S--QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i---~--~~DvVI~~~p~ 669 (1053)
+.+++ . ..|+||++++.
T Consensus 59 v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 59 VAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred HHHHHHHhcCCCCCEEEECCCc
Confidence 77653 2 37999998865
No 331
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=96.52 E-value=0.017 Score=62.47 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE 632 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~ 632 (1053)
.+..+|+|+|.|++|+.+++.|++.| + -+++++|-+ ..+.+-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsG-i------------------g~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~v 88 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSG-I------------------GRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEV 88 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcC-C------------------CeEEEEecccccccccchhhHhhhhhcccHHHHH
Confidence 56788999999999999999999998 3 144444432 112222
Q ss_pred HH----hcCCCceEEEecCC-CHHHHHHhhcc-ccEEEecCCccc-cHHHHHHHHHhCCeEEEe
Q 001559 633 VI----EGIPNAEAVQLDVS-DHKSLCKCISQ-VEIVISLLPASC-HVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 633 l~----~~~~~~~~~~~d~~-d~~~l~~~i~~-~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~ 689 (1053)
+. +-.|++++...+.. +.+.+.+++.. .|.||+|...-. -..++.-|.+++..++..
T Consensus 89 m~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss 152 (263)
T COG1179 89 MKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISS 152 (263)
T ss_pred HHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEee
Confidence 22 22455555544422 56667766654 777777764321 133344455555544444
No 332
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=96.51 E-value=0.014 Score=62.45 Aligned_cols=73 Identities=27% Similarity=0.298 Sum_probs=56.9
Q ss_pred EEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHH
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCK 655 (1053)
Q Consensus 577 VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~ 655 (1053)
|+|+| +|++|+++++.|.+.+ ..|....|+........... +++.+.+|+.|.+.+.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~-~~~~~~~dl~~~~~~~~ 59 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG--------------------HEVIVLSRSSNSESFEEKKL-NVEFVIGDLTDKEQLEK 59 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--------------------TEEEEEESCSTGGHHHHHHT-TEEEEESETTSHHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcC--------------------Cccccccccccccccccccc-eEEEEEeeccccccccc
Confidence 78999 7999999999999987 25666666644433222222 57889999999999999
Q ss_pred hhccc--cEEEecCCcc
Q 001559 656 CISQV--EIVISLLPAS 670 (1053)
Q Consensus 656 ~i~~~--DvVI~~~p~~ 670 (1053)
+++.. |+||+++...
T Consensus 60 ~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 60 LLEKANIDVVIHLAAFS 76 (236)
T ss_dssp HHHHHTESEEEEEBSSS
T ss_pred cccccCceEEEEeeccc
Confidence 99987 9999998653
No 333
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.51 E-value=0.016 Score=65.05 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH---
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH--- 650 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~--- 650 (1053)
.++|+|+|+|.+|+.+++.|.+.| ..+.|++++...+....... +++.|.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g--------------------~~v~i~g~d~~~~~~~~a~~-------lgv~d~~~~ 55 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG--------------------LVVRIIGRDRSAATLKAALE-------LGVIDELTV 55 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC--------------------CeEEEEeecCcHHHHHHHhh-------cCccccccc
Confidence 578999999999999999999988 26777777765544332221 122221
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHH---HHhCCeEEEeeccC
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTASYID 693 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~sy~~ 693 (1053)
+...+.+.++|+||-++|......+++.. ++.|+.+.|+....
T Consensus 56 ~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 56 AGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred chhhhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEeccccc
Confidence 22356777899999999988766665543 46788999997653
No 334
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=96.50 E-value=0.007 Score=65.74 Aligned_cols=120 Identities=12% Similarity=0.134 Sum_probs=89.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhC-CCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC-ceEEEecCCCHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASF-GSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-AEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-~~~~~~d~~d~~ 651 (1053)
....+++|+|..+....+.-.+. +.. .+|.|++|+.++|+++++.+.+ ..-+++++...+
T Consensus 138 S~vL~i~GsG~qA~~hi~ih~~~~psl------------------reVrIwnht~e~A~~la~~lsk~~~~iqie~~~~q 199 (333)
T KOG3007|consen 138 SCVLTIFGSGLQAFWHIYIHIKLIPSL------------------REVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQ 199 (333)
T ss_pred ceEEEEEcccchhHHHHHHHHHhcccc------------------eEEEeecCChHHHHHHHHHhhhcccceEEEEEehh
Confidence 34567779999998887765443 322 4899999999999998875542 334566666667
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee-ccChhHHHHHHHHHHcCCeEEec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS-YIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s-y~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
.+.++++..||++.||+.. .+-+.-..+++|+| +|+. ...|+|.+.++++-+.++.++..
T Consensus 200 sl~~aV~~sDIIs~atlst-ePilfgewlkpgth-IdlVGsf~p~mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 200 SLNGAVSNSDIISGATLST-EPILFGEWLKPGTH-IDLVGSFKPVMHECDDELIQSACVFVDS 260 (333)
T ss_pred hhhcccccCceEEeccccC-CceeeeeeecCCce-EeeeccCCchHHHHhHHHhhhheEEEec
Confidence 8999999999999999753 33444566889987 4554 46789999999999988887764
No 335
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.50 E-value=0.01 Score=66.00 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=57.0
Q ss_pred CCCeEEEEcCc---hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH---HHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGAG---RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD---AEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGaG---~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~---a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|++ ++|+++|+.|++.| .+|.+++|+.+. .+++.+..+....+++|
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~G--------------------a~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~D 65 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQG--------------------AELAFTYQGEALGKRVKPLAESLGSDFVLPCD 65 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCC--------------------CEEEEecCchHHHHHHHHHHHhcCCceEEeCC
Confidence 45789999975 89999999999988 378888887533 33443433333467899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 66 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 66 VEDIASVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 999888766654 46999999875
No 336
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.012 Score=64.11 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=61.5
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+.+.|+|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 65 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG--------------------AHVIVSSRKLDGCQAVADAIVAAGGKAEALACH 65 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 3457899999 7999999999999987 37899999988877666543 235678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 66 IGEMEQIDALFAHIRERHGRLDILVNNAAA 95 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 998887766554 47999999864
No 337
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.49 E-value=0.0095 Score=65.41 Aligned_cols=77 Identities=10% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC--CCceEEEec
Q 001559 572 KGTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI--PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~--~~~~~~~~d 646 (1053)
.+.+.++|.|+ +++|+++++.|++.| .+|.+.+|+. +.++..+.+ .++..+++|
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G--------------------~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~D 63 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQG--------------------ATVIYTYQND-RMKKSLQKLVDEEDLLVECD 63 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCC--------------------CEEEEecCch-HHHHHHHhhccCceeEEeCC
Confidence 34678999996 499999999999987 3788888884 444333332 236678999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 64 l~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 64 VASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 999887765543 36999999865
No 338
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.48 E-value=0.0055 Score=62.89 Aligned_cols=88 Identities=11% Similarity=0.204 Sum_probs=54.0
Q ss_pred eEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCcccccccc
Q 001559 206 LVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYA 285 (1053)
Q Consensus 206 ~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (1053)
.+++|+|-|.||+|.++.++.+|++ |++.|..... .++.. ..+|.-
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi~--------------------------alqA~--~dGf~v----- 69 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPIR--------------------------ALQAA--MDGFEV----- 69 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHHH--------------------------HHHHH--HTT-EE-----
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChHH--------------------------HHHhh--hcCcEe-----
Confidence 6789999999999999999999998 6665543211 01110 024421
Q ss_pred CccCcCcchhhhccCCCcEEEEcccccCCCCcccCHHHHHHhhcCCCCceEEEEEee
Q 001559 286 HPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITC 342 (1053)
Q Consensus 286 ~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~~~v~~m~k~~~~gsvIvDis~ 342 (1053)
..+ ++.++.+||+|++. ....+|+.+++++| | .+.+++++..
T Consensus 70 ------~~~-~~a~~~adi~vtaT----G~~~vi~~e~~~~m-k---dgail~n~Gh 111 (162)
T PF00670_consen 70 ------MTL-EEALRDADIFVTAT----GNKDVITGEHFRQM-K---DGAILANAGH 111 (162)
T ss_dssp ------E-H-HHHTTT-SEEEE-S----SSSSSB-HHHHHHS-----TTEEEEESSS
T ss_pred ------cCH-HHHHhhCCEEEECC----CCccccCHHHHHHh-c---CCeEEeccCc
Confidence 112 56788999999983 34568999999997 5 6788887653
No 339
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.46 E-value=0.0083 Score=69.10 Aligned_cols=90 Identities=21% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|||.|.+|+.+|+.|...| .+|.+++|+..... ..... +. .
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G--------------------~~V~~~d~~~~~~~--~~~~~-~~--------~ 195 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFG--------------------MRILYYSRTRKPEA--EKELG-AE--------Y 195 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--------------------CEEEEECCCCChhh--HHHcC-CE--------e
Confidence 456789999999999999999998876 48899999754322 11111 11 1
Q ss_pred HHHHHhhccccEEEecCCcccc--H---HHHHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCH--V---MVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~--~---~v~~aci~~g~~~vD~sy 691 (1053)
.++.++++++|+|+.++|..-. . .-..+.++.|..+++++-
T Consensus 196 ~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 196 RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTAR 241 (333)
T ss_pred cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcC
Confidence 3577889999999999996532 1 112334567777777763
No 340
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.46 E-value=0.012 Score=63.83 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=59.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|+| +|++|+.+++.|++.| .+|.+++|+.++.++..+.+ .++..+++|+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG--------------------AKLALIDLNQEKLEEAVAECGALGTEVRGYAANV 63 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC
Confidence 357899999 5999999999999887 37899999987766654432 2466788999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+|.+++.++++. .|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 64 TDEEDVEATFAQIAEDFGQLNGLINNAGI 92 (253)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 988777655543 6999999874
No 341
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.46 E-value=0.011 Score=64.48 Aligned_cols=75 Identities=31% Similarity=0.361 Sum_probs=59.3
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++...+ .++..+.+|++|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 60 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG--------------------FAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD 60 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence 4689999 7999999999999887 37888999987776655432 246778899999
Q ss_pred HHHHHHhhc-------cccEEEecCCc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+++.++++ ..|+||++++.
T Consensus 61 ~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 61 KDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 988877654 36999999875
No 342
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.46 E-value=0.0087 Score=67.61 Aligned_cols=98 Identities=12% Similarity=0.192 Sum_probs=62.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|.| +|++|+.+++.|.+.| +|.+.+|... .+..|++|.+.+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---------------------~V~~~~~~~~-------------~~~~Dl~d~~~~ 46 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---------------------NLIALDVHST-------------DYCGDFSNPEGV 46 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---------------------CEEEeccccc-------------cccCCCCCHHHH
Confidence 5799999 6999999999998876 4666776421 234699999999
Q ss_pred HHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEe
Q 001559 654 CKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 654 ~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
.++++ ++|+||+|+...... .|...-.... ..+..-+..|.+.|++.|+.++.
T Consensus 47 ~~~~~~~~~D~Vih~Aa~~~~~----~~~~~~~~~~--~~N~~~~~~l~~aa~~~g~~~v~ 101 (299)
T PRK09987 47 AETVRKIRPDVIVNAAAHTAVD----KAESEPEFAQ--LLNATSVEAIAKAANEVGAWVVH 101 (299)
T ss_pred HHHHHhcCCCEEEECCccCCcc----hhhcCHHHHH--HHHHHHHHHHHHHHHHcCCeEEE
Confidence 98888 489999998543110 0100000000 00112345666778888876654
No 343
>PLN02712 arogenate dehydrogenase
Probab=96.45 E-value=0.017 Score=72.38 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..++++|.|||+|.+|..++..|.+.| .+|.+++|+... ++ +..+. +.. .
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G--------------------~~V~~~dr~~~~-~~-a~~~G-v~~----~--- 415 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQG--------------------HTVLAYSRSDYS-DE-AQKLG-VSY----F--- 415 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCc--------------------CEEEEEECChHH-HH-HHHcC-CeE----e---
Confidence 346789999999999999999998876 378899998543 22 22332 221 1
Q ss_pred HHHHHhhc-cccEEEecCCccccHHHHHH----HHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecC
Q 001559 651 KSLCKCIS-QVEIVISLLPASCHVMVANA----CIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEM 714 (1053)
Q Consensus 651 ~~l~~~i~-~~DvVI~~~p~~~~~~v~~a----ci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~ 714 (1053)
.++.++++ ++|+||-|+|......++.. .++.|+.++|++-......+..+.....|+.++.++
T Consensus 416 ~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~H 484 (667)
T PLN02712 416 SDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTH 484 (667)
T ss_pred CCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeC
Confidence 22344444 58999999997655444433 245678899997654333333334444566666443
No 344
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.45 E-value=0.012 Score=63.71 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| ++++|+++++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G--------------------~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~ 63 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLG--------------------ATLILCDQDQSALKDTYEQCSALTDNVYSFQLKD 63 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 457899999 6889999999999987 37899999998887765432 2355677899
Q ss_pred CCHHHHHHhhc--------cccEEEecCC
Q 001559 648 SDHKSLCKCIS--------QVEIVISLLP 668 (1053)
Q Consensus 648 ~d~~~l~~~i~--------~~DvVI~~~p 668 (1053)
+|.+++.++++ ..|++|++++
T Consensus 64 ~~~~~~~~~~~~~~~~~g~~iD~li~nag 92 (227)
T PRK08862 64 FSQESIRHLFDAIEQQFNRAPDVLVNNWT 92 (227)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 99888765542 5799999985
No 345
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.44 E-value=0.014 Score=63.36 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=57.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~----~~~~~~~~d 646 (1053)
..++++|.| +|++|+.+++.|++.| .+|.+++|+.+ +.+++...+ .++..+.+|
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAG--------------------AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGAD 64 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcC
Confidence 347899999 6999999999999887 37888888643 444443322 245678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ +.|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (248)
T PRK07806 65 LTDEESVAALMDTAREEFGGLDALVLNASG 94 (248)
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 999988776654 47999998864
No 346
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=96.43 E-value=0.023 Score=62.80 Aligned_cols=116 Identities=23% Similarity=0.258 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC----HHHHH----HHHhcCCCceEE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----LKDAE----EVIEGIPNAEAV 643 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----~~~a~----~l~~~~~~~~~~ 643 (1053)
.+..+|+|+|+|+.|.+++.+|+..| +. .. ..+-.|.++.++++-.+.=+. ..|++ .+.+..|.+++.
T Consensus 28 l~~s~vlvvG~GglG~~~~~~la~aG-vg-~l--~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v~v~ 103 (254)
T COG0476 28 LKDSRVLVVGAGGLGSPAAKYLALAG-VG-KL--TIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVV 103 (254)
T ss_pred HhhCCEEEEecChhHHHHHHHHHHcC-CC-eE--EEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCCCeEE
Confidence 45678999999999999999999988 31 11 111111233333322221111 11222 233445555544
Q ss_pred EecC-CCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeec
Q 001559 644 QLDV-SDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 644 ~~d~-~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy 691 (1053)
.... -+.+.+.+++++.|+|++++-.+. ...+..+|...++.+++.+.
T Consensus 104 ~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~ 153 (254)
T COG0476 104 AYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGA 153 (254)
T ss_pred EeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeee
Confidence 3332 255666889999999999997643 46678889999988888763
No 347
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.011 Score=64.78 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=61.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C-CceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P-NAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~-~~~~~~~d 646 (1053)
+.++++|.| +|++|+.++..|++.| .+|.+++|+.++++++.+.+ + ++..+.+|
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D 65 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEG--------------------CHLHLVARDADALEALAADLRAAHGVDVAVHALD 65 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEec
Confidence 457899999 5899999999999987 38999999988877655432 2 36678899
Q ss_pred CCCHHHHHHhhc---cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS---QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~---~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++|++++.
T Consensus 66 ~~~~~~~~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 66 LSSPEAREQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 999888876655 48999999864
No 348
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.43 E-value=0.026 Score=70.17 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=81.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
..+|+|+|+|.+|+.+++.|.+.+ .+++++|.|+++++++.+. +..++..|.++.+.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--------------------~~vvvID~d~~~v~~~~~~--g~~v~~GDat~~~~L 457 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK--------------------MRITVLERDISAVNLMRKY--GYKVYYGDATQLELL 457 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC--------------------CCEEEEECCHHHHHHHHhC--CCeEEEeeCCCHHHH
Confidence 467999999999999999998876 4799999999999887653 478899999999999
Q ss_pred HH-hhccccEEEecCCcccc-HHHHHHHHHh--CCeEEEeeccChhHHHHHHHHHHcCCeEE
Q 001559 654 CK-CISQVEIVISLLPASCH-VMVANACIEF--KKHLVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 654 ~~-~i~~~DvVI~~~p~~~~-~~v~~aci~~--g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l 711 (1053)
++ -+.++|+||.+++.... ..+...+.+. ..+++--+..+.+... -+++|+..+
T Consensus 458 ~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~----L~~~Ga~~v 515 (601)
T PRK03659 458 RAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHE----LLQAGVTQF 515 (601)
T ss_pred HhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH----HHhCCCCEE
Confidence 84 48899999999987533 2333444333 2344444444444433 356777655
No 349
>PRK06924 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.01 Score=64.62 Aligned_cols=66 Identities=23% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcC-CCceEEEecCCCH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGI-PNAEAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~-~~~~~~~~d~~d~ 650 (1053)
+++|+|+| +|++|+.+++.|++.| .+|.+.+|+. ++.+.+.+.. .++.++.+|++|.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~ 60 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKG--------------------THVISISRTENKELTKLAEQYNSNLTFHSLDLQDV 60 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcC--------------------CEEEEEeCCchHHHHHHHhccCCceEEEEecCCCH
Confidence 36799999 7999999999999987 3788889986 5555555443 3577889999999
Q ss_pred HHHHHhhcc
Q 001559 651 KSLCKCISQ 659 (1053)
Q Consensus 651 ~~l~~~i~~ 659 (1053)
+++.+++++
T Consensus 61 ~~~~~~~~~ 69 (251)
T PRK06924 61 HELETNFNE 69 (251)
T ss_pred HHHHHHHHH
Confidence 888776654
No 350
>PRK09135 pteridine reductase; Provisional
Probab=96.43 E-value=0.0093 Score=64.48 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=57.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-HHHHHHHHhcC----C-CceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEGI----P-NAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~~----~-~~~~~~~d 646 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+++|+ .++.+++...+ + .+..+.+|
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 65 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAG--------------------YRVAIHYHRSAAEADALAAELNALRPGSAAALQAD 65 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcC
Confidence 47899999 7999999999999987 378888875 44444443222 1 36778899
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.++++. .|+||++++.
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 95 (249)
T PRK09135 66 LLDPDALPELVAACVAAFGRLDALVNNASS 95 (249)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9999888777663 6999999864
No 351
>PRK05865 hypothetical protein; Provisional
Probab=96.42 E-value=0.03 Score=71.56 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=69.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|.| +|++|+.+++.|.+.| .+|.+++|+.... . ..++..+.+|++|.+.+
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G--------------------~~Vv~l~R~~~~~--~---~~~v~~v~gDL~D~~~l 55 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG--------------------HEVVGIARHRPDS--W---PSSADFIAADIRDATAV 55 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc--------------------CEEEEEECCchhh--c---ccCceEEEeeCCCHHHH
Confidence 5799999 6999999999999887 3788889874321 1 12477889999999999
Q ss_pred HHhhccccEEEecCCccc---------cHHHHHHHHHhCC-eEEEeec
Q 001559 654 CKCISQVEIVISLLPASC---------HVMVANACIEFKK-HLVTASY 691 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~---------~~~v~~aci~~g~-~~vD~sy 691 (1053)
.++++++|+||+++.... ...+.++|.+.|. ++|-+|.
T Consensus 56 ~~al~~vD~VVHlAa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS 103 (854)
T PRK05865 56 ESAMTGADVVAHCAWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSS 103 (854)
T ss_pred HHHHhCCCEEEECCCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 999999999999985421 1234567777764 5666654
No 352
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.42 E-value=0.015 Score=63.80 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=56.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CCCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IPNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+++++.|++.| .+|.+++|+.. .+++.+. -.++..+.+|+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G--------------------~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~ 65 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEG--------------------ARVVLVDRSEL-VHEVAAELRAAGGEALALTADL 65 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeC
Confidence 457899999 6999999999999987 37888999843 3333322 22456788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|++|++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~id~lv~nAg~ 94 (260)
T PRK12823 66 ETYAGAQAAMAAAVEAFGRIDVLINNVGG 94 (260)
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 99877766555 47999998863
No 353
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.42 E-value=0.012 Score=63.55 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=56.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.+...+..... ++..+.+|++|.++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~-~~~~~~~D~~~~~~ 60 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG--------------------QPVIVSYRTHYPAIDGLRQA-GAQCIQADFSTNAG 60 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC--------------------CeEEEEeCCchhHHHHHHHc-CCEEEEcCCCCHHH
Confidence 36799999 6999999999999887 37888999876543333332 36778899999887
Q ss_pred HHHhhc-------cccEEEecCCc
Q 001559 653 LCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~ 669 (1053)
+.+++. ..|++|++++.
T Consensus 61 ~~~~~~~~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 61 IMAFIDELKQHTDGLRAIIHNASD 84 (236)
T ss_pred HHHHHHHHHhhCCCccEEEECCcc
Confidence 765543 37999999864
No 354
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=96.41 E-value=0.0093 Score=68.39 Aligned_cols=79 Identities=20% Similarity=0.138 Sum_probs=59.6
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-----HHHHHHhc----CCCc
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-----DAEEVIEG----IPNA 640 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-----~a~~l~~~----~~~~ 640 (1053)
..++++|+|.| +|++|+.+++.|++.| .+|.+++|+.+ +++.+.+. -.++
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKG--------------------YEVHGIIRRSSNFNTQRLDHIYIDPHPNKARM 62 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCC--------------------CEEEEEecccccccccchhhhccccccccCce
Confidence 34568899999 6999999999999987 37888877543 23333211 1236
Q ss_pred eEEEecCCCHHHHHHhhcc--ccEEEecCCc
Q 001559 641 EAVQLDVSDHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 641 ~~~~~d~~d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
+.+.+|++|.+.+.+++++ .|+||+++..
T Consensus 63 ~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 63 KLHYGDLSDASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred EEEEecCCCHHHHHHHHHHcCCCEEEECCcc
Confidence 7888999999999888875 5999999864
No 355
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.41 E-value=0.012 Score=63.81 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=59.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcCC-CceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+. .|+.++++++...++ ++.++.+|++|
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G--------------------~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 63 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREG--------------------ARVVVNYHQSEDAAEALADELGDRAIALQADVTD 63 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC--------------------CeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCC
Confidence 357899999 7999999999999987 256654 456667676665543 46778899999
Q ss_pred HHHHHHhhcc--------ccEEEecCCc
Q 001559 650 HKSLCKCISQ--------VEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~--------~DvVI~~~p~ 669 (1053)
.+++.+++++ .|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~id~li~~ag~ 91 (253)
T PRK08642 64 REQVQAMFATATEHFGKPITTVVNNALA 91 (253)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 8888776653 7999999864
No 356
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=96.41 E-value=0.0097 Score=65.61 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=56.6
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC------HHHHHHHHhcCCCceEE
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY------LKDAEEVIEGIPNAEAV 643 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~------~~~a~~l~~~~~~~~~~ 643 (1053)
+.+.++|.|+ +++|+++|+.|++.| .+|.+..|+ .+.++++.+...++..+
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAG--------------------AELGITYLPDEKGRFEKKVRELTEPLNPSLFL 64 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCC--------------------CEEEEEecCcccchHHHHHHHHHhccCcceEe
Confidence 3578999996 599999999999988 267776543 33445554443446678
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|++|.+++.++++ ..|++||+++.
T Consensus 65 ~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 65 PCDVQDDAQIEETFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred ecCcCCHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 899999988776654 46999999875
No 357
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.41 E-value=0.0099 Score=68.36 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.+.++|.|||+|.+|+.+|+.|...| .+|.+++|+.+..... .+ . ..
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G--------------------~~V~~~d~~~~~~~~~------~~-----~--~~ 190 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFG--------------------ATITAYDAYPNKDLDF------LT-----Y--KD 190 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--------------------CEEEEEeCChhHhhhh------hh-----c--cC
Confidence 45678999999999999999998876 4899999987543211 11 0 13
Q ss_pred HHHHhhccccEEEecCCcccc--HHHH---HHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCH--VMVA---NACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~--~~v~---~aci~~g~~~vD~s 690 (1053)
++.++++++|+|+.++|..-. ..+. ...++.|..+|+++
T Consensus 191 ~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 191 SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred CHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 577889999999999997642 1121 22345566666665
No 358
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=96.39 E-value=0.013 Score=63.65 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=58.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++++|.| +|++|+.+++.|++.| .+|.+++|+.++.+++.+.+ .++..+.+|++|
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG--------------------ANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK 61 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC
Confidence 5799999 7999999999999887 37999999988777665432 246778899999
Q ss_pred HHHHHHhh-------ccccEEEecCCc
Q 001559 650 HKSLCKCI-------SQVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i-------~~~DvVI~~~p~ 669 (1053)
.+++.+++ ...|+||++...
T Consensus 62 ~~~~~~~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 62 EDEIADMIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 88655443 457999998754
No 359
>PRK05855 short chain dehydrogenase; Validated
Probab=96.39 E-value=0.0095 Score=72.90 Aligned_cols=78 Identities=24% Similarity=0.246 Sum_probs=63.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|+| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++.++.+|+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv 373 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREG--------------------AEVVASDIDEAAAERTAELIRAAGAVAHAYRVDV 373 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 457899999 6999999999999987 37999999988887766543 2467889999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++++ .|+|||+++..
T Consensus 374 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~ 403 (582)
T PRK05855 374 SDADAMEAFAEWVRAEHGVPDIVVNNAGIG 403 (582)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEECCccC
Confidence 999888776654 69999999753
No 360
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.39 E-value=0.014 Score=65.70 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=52.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC--------CCceEEE-
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI--------PNAEAVQ- 644 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~--------~~~~~~~- 644 (1053)
.++|.|||+|.+|..+|..|+..| .+|.++|++.+.+++..+.+ ++.....
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G--------------------~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHG--------------------FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh
Confidence 368999999999999999999887 38999999987666554321 0000000
Q ss_pred -------ecCCCHHHHHHhhccccEEEecCCcc
Q 001559 645 -------LDVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 645 -------~d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
-.++-..++.+.++++|+||.|+|-.
T Consensus 63 ~~~~~~~~~i~~~~d~~~a~~~aDlVieavpe~ 95 (287)
T PRK08293 63 APAEAALNRITLTTDLAEAVKDADLVIEAVPED 95 (287)
T ss_pred hhHHHHHcCeEEeCCHHHHhcCCCEEEEeccCC
Confidence 00001234667788999999999955
No 361
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.38 E-value=0.015 Score=63.36 Aligned_cols=78 Identities=26% Similarity=0.330 Sum_probs=59.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~ 648 (1053)
.+.++|+|.| +|++|+.+++.|++.| .+|.+++|+.+..+ ...... ++..+.+|++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G--------------------~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~Dl~ 71 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKG--------------------ARVALLDRSEDVAE-VAAQLLGGNAKGLVCDVS 71 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHH-HHHHhhCCceEEEEecCC
Confidence 3467899999 6999999999999987 37889999876433 232222 3567889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.+++.+++. ..|+||++++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 100 (255)
T PRK06841 72 DSQSVEAAVAAVISAFGRIDILVNSAGVA 100 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 9888776655 469999999753
No 362
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.38 E-value=0.019 Score=64.15 Aligned_cols=80 Identities=25% Similarity=0.270 Sum_probs=59.1
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHH----hcCC-C-ceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI----EGIP-N-AEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~----~~~~-~-~~~~~ 644 (1053)
...+.|+|-| +.++|.++|..|++.| .++.++.|..++.+++. +..+ . +.+++
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G--------------------~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~ 69 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRG--------------------AKLVLVARRARRLERVAEELRKLGSLEKVLVLQ 69 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCC--------------------CceEEeehhhhhHHHHHHHHHHhCCcCccEEEe
Confidence 3467788889 6899999999999998 25555555555555553 3332 3 78899
Q ss_pred ecCCCHHHHHHh-------hccccEEEecCCccc
Q 001559 645 LDVSDHKSLCKC-------ISQVEIVISLLPASC 671 (1053)
Q Consensus 645 ~d~~d~~~l~~~-------i~~~DvVI~~~p~~~ 671 (1053)
+|++|.++..+. +.+.|++||-++...
T Consensus 70 ~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 70 LDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCCEEEecCcccc
Confidence 999998887744 346899999998765
No 363
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.38 E-value=0.012 Score=64.32 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=58.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~----~~~~~~~~d 646 (1053)
+.+.++|.| +|++|+++++.|++.| .+|.+.+|+.+ .++++.+.+ .++..+.+|
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 66 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAG--------------------ADVALFDLRTDDGLAETAEHIEAAGRRAIQIAAD 66 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcC
Confidence 457899998 7999999999999987 37888888643 334443322 246678899
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++++ .|+||++++.
T Consensus 67 ~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 96 (254)
T PRK06114 67 VTSKADLRAAVARTEAELGALTLAVNAAGI 96 (254)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9999888776654 5999999875
No 364
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.37 E-value=0.017 Score=63.25 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=57.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcCCCceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..++++|.| +|++|+.+++.|++.| .+|.+..+ +.+.++++... ++..+.+|++|.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G--------------------~~v~~~~~~~~~~~~~l~~~--~~~~~~~Dl~~~ 63 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREG--------------------AKVAVLYNSAENEAKELREK--GVFTIKCDVGNR 63 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCcHHHHHHHHhC--CCeEEEecCCCH
Confidence 457899999 6999999999999987 26666655 44445555433 467889999999
Q ss_pred HHHHHhhc-------cccEEEecCCcc
Q 001559 651 KSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+++.++++ ..|+||++++..
T Consensus 64 ~~~~~~~~~~~~~~~~id~li~~ag~~ 90 (255)
T PRK06463 64 DQVKKSKEVVEKEFGRVDVLVNNAGIM 90 (255)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 88877665 469999998653
No 365
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.36 E-value=0.022 Score=68.65 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=68.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCC----
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS---- 648 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~---- 648 (1053)
...+|+|+|+|.+|..++..+...| ..|.+++++.++.+... .++ .+.+.+|..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--------------------A~V~v~d~~~~rle~a~-~lG-a~~v~v~~~e~g~ 220 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--------------------AIVRAFDTRPEVKEQVQ-SMG-AEFLELDFKEEGG 220 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHH-HcC-CeEEecccccccc
Confidence 3589999999999999999998887 26999999988766544 354 444444431
Q ss_pred ----------CH------HHHHHhhccccEEEecC-----Ccc-ccHHHHHHHHHhCCeEEEeec
Q 001559 649 ----------DH------KSLCKCISQVEIVISLL-----PAS-CHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 649 ----------d~------~~l~~~i~~~DvVI~~~-----p~~-~~~~v~~aci~~g~~~vD~sy 691 (1053)
+. +.+.+.++++|+||+++ |.. +-..-+.+.++.|..+||++.
T Consensus 221 ~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 221 SGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred ccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 11 11456678899999999 322 122334567889999999974
No 366
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.35 E-value=0.015 Score=61.47 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=66.5
Q ss_pred CCCCeEEEEc--CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 572 KGTSSVLIIG--AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG--aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
...+.|+|.| .|++|.++++.+++.| .+|..+.|+.++...|..... .....+|+++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G--------------------~~V~AtaR~~e~M~~L~~~~g-l~~~kLDV~~ 63 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNG--------------------YLVYATARRLEPMAQLAIQFG-LKPYKLDVSK 63 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCC--------------------eEEEEEccccchHhhHHHhhC-CeeEEeccCC
Confidence 3467899999 4999999999999988 489999999998888875543 6788899999
Q ss_pred HHHHHHhhcc--------ccEEEecCCccccHHH
Q 001559 650 HKSLCKCISQ--------VEIVISLLPASCHVMV 675 (1053)
Q Consensus 650 ~~~l~~~i~~--------~DvVI~~~p~~~~~~v 675 (1053)
++++.+..++ -|+++|-++..+..+.
T Consensus 64 ~~~V~~v~~evr~~~~Gkld~L~NNAG~~C~~Pa 97 (289)
T KOG1209|consen 64 PEEVVTVSGEVRANPDGKLDLLYNNAGQSCTFPA 97 (289)
T ss_pred hHHHHHHHHHHhhCCCCceEEEEcCCCCCccccc
Confidence 8887665442 5899998887765443
No 367
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.35 E-value=0.012 Score=67.72 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHh-CCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLAS-FGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.+.++|.|||+|.+|+.+|+.|++ .+ .+|...|++..... ... +. -.
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~~g--------------------~~V~~~d~~~~~~~--~~~---~~-------~~ 191 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKGYG--------------------SDVVAYDPFPNAKA--ATY---VD-------YK 191 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhcCC--------------------CEEEEECCCccHhH--Hhh---cc-------cc
Confidence 456889999999999999999953 33 47888888754321 110 11 11
Q ss_pred HHHHHhhccccEEEecCCccccHH-H----HHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCHVM-V----ANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~-v----~~aci~~g~~~vD~sy 691 (1053)
.++.++++++|+|+.++|..-... + ....++.|+.+|+++-
T Consensus 192 ~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred CCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCC
Confidence 357788999999999999754221 1 1233466777777763
No 368
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.35 E-value=0.017 Score=67.22 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=69.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.+++..|.+.| + .+.+.+++.++.+..... . ... .|- ...++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G-~-------------------~v~i~~~~~~~~~~~~a~-~-~~~--~~~-~~~~~~ 55 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG-P-------------------DVFIIGYDPSAAQLARAL-G-FGV--IDE-LAADLQ 55 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC-C-------------------CeEEEEeCCCHHHHHHHh-c-CCC--Ccc-cccCHH
Confidence 36999999999999999999887 2 567777776554332211 1 111 110 123456
Q ss_pred HhhccccEEEecCCccccHHHHHH----HHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEec
Q 001559 655 KCISQVEIVISLLPASCHVMVANA----CIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~a----ci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
+.++++|+||-|+|......+... ++..++.+.|++-.......-.+.....+..++.+
T Consensus 56 ~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~ 118 (359)
T PRK06545 56 RAAAEADLIVLAVPVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGG 118 (359)
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEee
Confidence 778899999999998654444332 24457778888766533222111222345566654
No 369
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=96.34 E-value=0.022 Score=64.08 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=57.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-------------------HHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-------------------KDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-------------------~~a~- 631 (1053)
.+..+|+|+|+|++|..+|++|+..| + -+++++|.+. .|++
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaG-V------------------g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea 77 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAG-V------------------KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEA 77 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcC-C------------------CeEEEEcCCccchhhcccCccCChHHhCHHHHHH
Confidence 45688999999999999999999988 3 2566666431 2332
Q ss_pred ---HHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEe
Q 001559 632 ---EVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~ 689 (1053)
++.+..|.+++...+-. ...+.++++|+||.+.... ....+.+.|.++++.++..
T Consensus 78 ~~~~L~eLNp~V~V~~~~~~---~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a 136 (286)
T cd01491 78 SQARLAELNPYVPVTVSTGP---LTTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISA 136 (286)
T ss_pred HHHHHHHHCCCCEEEEEecc---CCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEE
Confidence 33344555544333221 1125567788888876421 1234455566655555444
No 370
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.33 E-value=0.035 Score=63.15 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=53.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceE-------
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEA------- 642 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~------- 642 (1053)
.++|.|||+|.+|..++..|++.| .+|++++++.++++++.+.. +....
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g--------------------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKG--------------------LQVVLIDVMEGALERARGVIERALGVYAPLGIASAG 63 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCC--------------------CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHH
Confidence 468999999999999999999876 37999999988877665421 10000
Q ss_pred -EEecCCCHHHHHHhhccccEEEecCCccc
Q 001559 643 -VQLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 643 -~~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
..+.. ..++.+.++++|+||.|+|...
T Consensus 64 ~~~i~~--~~~~~~~~~~aDlVi~av~~~~ 91 (311)
T PRK06130 64 MGRIRM--EAGLAAAVSGADLVIEAVPEKL 91 (311)
T ss_pred hhceEE--eCCHHHHhccCCEEEEeccCcH
Confidence 00011 1234566789999999999764
No 371
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.33 E-value=0.013 Score=67.03 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..+.++|.|||+|.+|++++..|...| .+|.+.+|+..+..+.+... ++..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG--------------------~~Vvv~~r~~~~s~~~A~~~-G~~~-------- 64 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSG--------------------VDVVVGLREGSKSWKKAEAD-GFEV-------- 64 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCC--------------------CEEEEEECCchhhHHHHHHC-CCee--------
Confidence 456789999999999999999999887 37888888755555554443 2221
Q ss_pred HHHHHhhccccEEEecCCccccHHHH
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVA 676 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~ 676 (1053)
.+..++++++|+|+.++|......+.
T Consensus 65 ~s~~eaa~~ADVVvLaVPd~~~~~V~ 90 (330)
T PRK05479 65 LTVAEAAKWADVIMILLPDEVQAEVY 90 (330)
T ss_pred CCHHHHHhcCCEEEEcCCHHHHHHHH
Confidence 13567788999999999987655554
No 372
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.32 E-value=0.006 Score=69.57 Aligned_cols=88 Identities=20% Similarity=0.270 Sum_probs=61.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.+.++|.|+|.|.+|+.+|+.|...| .+|.+++++.++. +.+... ....
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG--------------------~~V~~~~~~~~~~-------~~~~~~----~~~~ 182 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWG--------------------FPLRCWSRSRKSW-------PGVQSF----AGRE 182 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCCCCC-------CCceee----cccc
Confidence 45689999999999999999999876 4888999865331 111111 1235
Q ss_pred HHHHhhccccEEEecCCccccH-HH----HHHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHV-MV----ANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~-~v----~~aci~~g~~~vD~s 690 (1053)
+|.++++++|+|+.++|..-.. .+ ..++++.|+.+|+++
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 7889999999999999975321 11 123456666677765
No 373
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=96.32 E-value=0.014 Score=60.97 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=62.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC---ceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN---AEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~---~~~~~~d~~ 648 (1053)
+.+.++|.| +-++|++++..|++.| .+|.|++++.+.|++.+..++. -..+.+|++
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~G--------------------arv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS 72 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKG--------------------ARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVS 72 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcC--------------------cEEEEeecchhhHHHHHhhcCCCCccceeeeccC
Confidence 345677777 5689999999999998 3899999999999999988764 457889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++.+..++ ..++++||++..
T Consensus 73 ~a~~v~~~l~e~~k~~g~psvlVncAGIt 101 (256)
T KOG1200|consen 73 KAHDVQNTLEEMEKSLGTPSVLVNCAGIT 101 (256)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 8766655443 469999999865
No 374
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.30 E-value=0.015 Score=63.69 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=58.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC-CCceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI-PNAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~-~~~~~~~~d~~d 649 (1053)
+.++++|.| +|++|+++++.|++.| .+|.+++|+.. ++.+..+.. .++..+.+|++|
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G--------------------~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 66 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAG--------------------ADIVGVGVAEAPETQAQVEALGRKFHFITADLIQ 66 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 457899999 7999999999999987 37888888642 233333333 346778999999
Q ss_pred HHHHHHhhc-------cccEEEecCCcc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+++.++++ ..|++|++++..
T Consensus 67 ~~~~~~~~~~~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 67 QKDIDSIVSQAVEVMGHIDILINNAGII 94 (251)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 988877765 369999998753
No 375
>PLN00016 RNA-binding protein; Provisional
Probab=96.30 E-value=0.012 Score=68.81 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=63.6
Q ss_pred CCCCeEEEE----c-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHh-------cC--
Q 001559 572 KGTSSVLII----G-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE-------GI-- 637 (1053)
Q Consensus 572 ~~~~~VlIi----G-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~-------~~-- 637 (1053)
..+++|+|+ | +|++|+.+++.|.+.| .+|++++|+......+.. .+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G--------------------~~V~~l~R~~~~~~~~~~~~~~~~~~l~~ 109 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAG--------------------HEVTLFTRGKEPSQKMKKEPFSRFSELSS 109 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCC--------------------CEEEEEecCCcchhhhccCchhhhhHhhh
Confidence 446789999 8 6999999999999987 389999998654332210 11
Q ss_pred CCceEEEecCCCHHHHHHhh--ccccEEEecCCccc--cHHHHHHHHHhCC-eEEEee
Q 001559 638 PNAEAVQLDVSDHKSLCKCI--SQVEIVISLLPASC--HVMVANACIEFKK-HLVTAS 690 (1053)
Q Consensus 638 ~~~~~~~~d~~d~~~l~~~i--~~~DvVI~~~p~~~--~~~v~~aci~~g~-~~vD~s 690 (1053)
.+++.+..|..| +.+.+ .++|+||++..... ...++++|.++|+ ++|-+|
T Consensus 110 ~~v~~v~~D~~d---~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 110 AGVKTVWGDPAD---VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred cCceEEEecHHH---HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 246778887755 44444 46899999865322 2345566666664 455443
No 376
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.30 E-value=0.025 Score=63.86 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=60.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----------CCceEE
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----------PNAEAV 643 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----------~~~~~~ 643 (1053)
.++|.|||+|.+|+.+|..|+..| .+|++.|++++.+++..+.+ ...+..
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G--------------------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~ 64 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG--------------------VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER 64 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChh
Confidence 458999999999999999999887 48999999998876632211 001000
Q ss_pred -----EecCCCHHHHHHhhccccEEEecCCccccH--H---HHHHHH-HhCCeEEEeec
Q 001559 644 -----QLDVSDHKSLCKCISQVEIVISLLPASCHV--M---VANACI-EFKKHLVTASY 691 (1053)
Q Consensus 644 -----~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~--~---v~~aci-~~g~~~vD~sy 691 (1053)
.-.++-..++ +.++++|+||.|+|-.... . ..+.+. ..++.+.+.+.
T Consensus 65 ~~~~~~~~l~~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 65 ERDAALARLRFTTDL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred hHHHHHhCeEeeCCH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 0000001223 3468999999999876541 1 123333 56666666554
No 377
>PRK08278 short chain dehydrogenase; Provisional
Probab=96.29 E-value=0.017 Score=64.18 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=57.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH-------HHHHHh----cCCCc
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD-------AEEVIE----GIPNA 640 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~-------a~~l~~----~~~~~ 640 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+++|+.+. .+++.+ .-.++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 64 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDG--------------------ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQA 64 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEecccccccchhhHHHHHHHHHHhcCCce
Confidence 357899999 7999999999999987 378888887542 222222 22246
Q ss_pred eEEEecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 641 EAVQLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 641 ~~~~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
..+.+|+++.+++.++++ ..|+||++++.
T Consensus 65 ~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 65 LPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 678899999988876665 57999999875
No 378
>PRK06720 hypothetical protein; Provisional
Probab=96.28 E-value=0.022 Score=59.15 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=59.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++.++|.| +|++|+.+++.|++.| .+|.+.+|+.+.+++..+.+ +.+.++.+|+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G--------------------~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl 74 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQG--------------------AKVIVTDIDQESGQATVEEITNLGGEALFVSYDM 74 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 457889999 5789999999999887 37999999987765554332 2356788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++.+++.++++ ..|++||+++..
T Consensus 75 ~~~~~v~~~v~~~~~~~G~iDilVnnAG~~ 104 (169)
T PRK06720 75 EKQGDWQRVISITLNAFSRIDMLFQNAGLY 104 (169)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 98887766542 479999998753
No 379
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.28 E-value=0.013 Score=64.61 Aligned_cols=78 Identities=9% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCCeEEEEc---CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC---HHHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIG---AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY---LKDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG---aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~---~~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.| ++++|+++|+.|++.| .+|.+..|+ .+.++++....+....+++|
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQG--------------------AELAFTYVVDKLEERVRKMAAELDSELVFRCD 64 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCC--------------------CEEEEEcCcHHHHHHHHHHHhccCCceEEECC
Confidence 457899999 4599999999999988 367776654 34455555444445678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.+++. ..|++||+++..
T Consensus 65 v~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 65 VASDDEINQVFADLGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEECCccC
Confidence 999888776653 479999998753
No 380
>PRK06398 aldose dehydrogenase; Validated
Probab=96.28 E-value=0.01 Score=65.26 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=56.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+.+|+..+. .++..+.+|++|.+
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G--------------------~~Vi~~~r~~~~~-------~~~~~~~~D~~~~~ 57 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEG--------------------SNVINFDIKEPSY-------NDVDYFKVDVSNKE 57 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CeEEEEeCCcccc-------CceEEEEccCCCHH
Confidence 457899999 6999999999999987 3788889875432 24678899999988
Q ss_pred HHHHhhc-------cccEEEecCCc
Q 001559 652 SLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++.++++ ..|+|||+++.
T Consensus 58 ~i~~~~~~~~~~~~~id~li~~Ag~ 82 (258)
T PRK06398 58 QVIKGIDYVISKYGRIDILVNNAGI 82 (258)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 8776664 47999999864
No 381
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.27 E-value=0.03 Score=63.08 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=55.3
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCccccccccccc-ccCCCccEEEE-EEC---CHHHHHHHH----hcCCCceE--EE
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETD-FEWQNDIRVLV-ASL---YLKDAEEVI----EGIPNAEA--VQ 644 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~-~~~~~~~~v~v-~~r---~~~~a~~l~----~~~~~~~~--~~ 644 (1053)
+|+|+|+|++|..+++.|+..| +. ...+.|+ .++.+++.-.. +.. ...||+.++ +..|.+++ ..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg----~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FR----NIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CC----eEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5999999999999999999988 31 1122221 13233322111 110 123444333 34565443 33
Q ss_pred ecCCCHHHHHHhhccccEEEecCCcccc-HHHHHHHHHh
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLPASCH-VMVANACIEF 682 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~ 682 (1053)
.++.+. -.+.++++|+||+++...-. ..+.+.|.+.
T Consensus 76 ~~i~~~--~~~f~~~fdvVi~alDn~~aR~~in~~~~~~ 112 (291)
T cd01488 76 GKIQDK--DEEFYRQFNIIICGLDSIEARRWINGTLVSL 112 (291)
T ss_pred cccCch--hHHHhcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 444332 24778899999999865332 3344555554
No 382
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.26 E-value=0.014 Score=64.33 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcC-----CCceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGI-----PNAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~-----~~~~~~~ 644 (1053)
.+.++++|.| ++++|+++++.|++.| ..|.++. |+.++++++.+.+ .++..+.
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSG--------------------VNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYP 65 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEE
Confidence 3467899999 6999999999999987 2666664 5666665554332 2467889
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|++|.+++.+++. ..|++|++++.
T Consensus 66 ~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 97 (260)
T PRK08416 66 LNILEPETYKELFKKIDEDFDRVDFFISNAII 97 (260)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCccEEEECccc
Confidence 99999888776654 36999998853
No 383
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.015 Score=64.48 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=57.7
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----C-ceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----N-AEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~-~~~~~~d~~ 648 (1053)
++++|.| +|++|+.+++.|++.| ..|.+++|+.+..+++.+.+. + ...+.+|++
T Consensus 1 k~vlItGas~giG~~la~~la~~G--------------------~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG--------------------AELFLTDRDADGLAQTVADARALGGTVPEHRALDIS 60 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCC
Confidence 4689998 7999999999999887 378889999877666654321 2 344679999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.+++. ..|+||++++..
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 89 (272)
T PRK07832 61 DYDAVAAFAADIHAAHGSMDVVMNIAGIS 89 (272)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 9887765554 369999998653
No 384
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.25 E-value=0.019 Score=63.34 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC---HHHHHHHHhcCC--CceEEE
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY---LKDAEEVIEGIP--NAEAVQ 644 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~---~~~a~~l~~~~~--~~~~~~ 644 (1053)
..+.++|.|+ +++|+++|+.|++.| .+|.+++|+ .++++++.+.++ ++..++
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 65 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAG--------------------AKLVFTYAGERLEKEVRELADTLEGQESLLLP 65 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC--------------------CEEEEecCcccchHHHHHHHHHcCCCceEEEe
Confidence 4578999996 699999999999988 378887654 456667766553 466788
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|++|.+++.++++ ..|++||+++.
T Consensus 66 ~Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 66 CDVTSDEEITACFETIKEEVGVIHGVAHCIAF 97 (257)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCccEEEECccc
Confidence 99999887765553 37999999864
No 385
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.24 E-value=0.01 Score=60.67 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=57.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.++|.|||+|..|++.+..|.+.| ..|.|..|..++..+.++.- ++++ .+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG--------------------~~V~Vglr~~s~s~~~A~~~-Gf~v--------~~ 53 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSG--------------------VNVIVGLREGSASWEKAKAD-GFEV--------MS 53 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC---------------------EEEEEE-TTCHHHHHHHHT-T-EC--------CE
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC--------------------CCEEEEecCCCcCHHHHHHC-CCee--------cc
Confidence 5689999999999999999999887 48999988766444444432 2232 34
Q ss_pred HHHhhccccEEEecCCccccHHHHH----HHHHhCCeEEEe
Q 001559 653 LCKCISQVEIVISLLPASCHVMVAN----ACIEFKKHLVTA 689 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~----aci~~g~~~vD~ 689 (1053)
+.++++++|+|+.++|-..+..+-+ -.++.|+.++-.
T Consensus 54 ~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 54 VAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLVFA 94 (165)
T ss_dssp HHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEEES
T ss_pred HHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEEeC
Confidence 6788899999999999877765543 345666654433
No 386
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=96.23 E-value=0.015 Score=62.84 Aligned_cols=77 Identities=26% Similarity=0.283 Sum_probs=57.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE-EECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV-ASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v-~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++.++|.| +|++|+.+++.|++.| + +|.+ ..|+.++.+++...+ .++..+.+|+
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g-~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 60 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEG-Y-------------------TVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADI 60 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-C-------------------EEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccC
Confidence 35789999 6999999999999887 2 5655 567777666554332 2367789999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++++ .|+||++++..
T Consensus 61 ~d~~~i~~~~~~~~~~~~~id~vi~~ag~~ 90 (247)
T PRK09730 61 SDENQVVAMFTAIDQHDEPLAALVNNAGIL 90 (247)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 999888877664 47999998753
No 387
>PRK08017 oxidoreductase; Provisional
Probab=96.22 E-value=0.019 Score=62.51 Aligned_cols=73 Identities=25% Similarity=0.199 Sum_probs=56.8
Q ss_pred CeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++|+|.|+ |++|+.+++.|++.| .+|.+++|+.++.+.+.+. ++..+.+|++|.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~--~~~~~~~D~~~~~~~ 60 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG--------------------YRVLAACRKPDDVARMNSL--GFTGILLDLDDPESV 60 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHhHHHHhC--CCeEEEeecCCHHHH
Confidence 57999995 999999999999887 3788999998887765442 467888999988776
Q ss_pred HHhhc--------cccEEEecCCc
Q 001559 654 CKCIS--------QVEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~--------~~DvVI~~~p~ 669 (1053)
.++++ ..|.+|++.+.
T Consensus 61 ~~~~~~i~~~~~~~~~~ii~~ag~ 84 (256)
T PRK08017 61 ERAADEVIALTDNRLYGLFNNAGF 84 (256)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCC
Confidence 55443 35788888754
No 388
>PRK09134 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.017 Score=63.39 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=57.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
..++++|.| +|++|+.+++.|++.| .+|.++.+ +.++.+++...+ .++..+.+|
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG--------------------FDVAVHYNRSRDEAEALAAEIRALGRRAVALQAD 67 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 457899999 7999999999999887 25666544 555555444332 346778899
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++++ .|+||++++.
T Consensus 68 l~d~~~~~~~~~~~~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 68 LADEAEVRALVARASAALGPITLLVNNASL 97 (258)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 9999888776653 6999999864
No 389
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=96.22 E-value=0.019 Score=65.46 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=60.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~~ 648 (1053)
++.++|.| ++++|+++++.|++.|. .+|.+++|+.++++++.+.+. ++..+.+|++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~-------------------~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~ 63 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGE-------------------WHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLG 63 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-------------------CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 45788888 68999999999998862 378899999988877766542 3567789999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|++|++++.
T Consensus 64 ~~~~v~~~~~~~~~~~~~iD~lI~nAG~ 91 (314)
T TIGR01289 64 SLDSVRQFVQQFRESGRPLDALVCNAAV 91 (314)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 9887765543 47999999874
No 390
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.018 Score=63.11 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=57.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH---HHHhcCCCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE---EVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~---~l~~~~~~~~~~~~d~~ 648 (1053)
..++++|.| +|++|+.+++.|++.| .+|.+++|+.+..+ ++.....++..+.+|++
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G--------------------~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~ 64 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHG--------------------ANLILLDISPEIEKLADELCGRGHRCTAVVADVR 64 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEecCCHHHHHHHHHHHHhCCceEEEECCCC
Confidence 357899998 7999999999999987 37899999864221 22221234667889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|+||+++..
T Consensus 65 ~~~~v~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 65 DPASVAAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 9888777655 46999999864
No 391
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.21 E-value=0.017 Score=62.17 Aligned_cols=77 Identities=30% Similarity=0.326 Sum_probs=56.0
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhc----CCCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEG----IPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~----~~~~~~~~~d 646 (1053)
++++|+|+| +|++|+.++..|++.| + +|.+..| +.+..+.+... -+++..+.+|
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g-~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAG-A-------------------DVVVHYRSDEEAAEELVEAVEALGRRAQAVQAD 64 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-C-------------------eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 357899999 7999999999999987 2 5555444 44333333322 2347788999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 94 (249)
T PRK12825 65 VTDKAALEAAVAAAVERFGRIDILVNNAGI 94 (249)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 999988877665 46999999873
No 392
>PRK06484 short chain dehydrogenase; Validated
Probab=96.21 E-value=0.017 Score=70.27 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=64.1
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
...+.++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.++ ++..+.+|++|
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~ 326 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAG--------------------DRLLIIDRDAEGAKKLAEALGDEHLSVQADITD 326 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhCCceeEEEccCCC
Confidence 3567899998 7999999999999988 379999999998888877654 35668899999
Q ss_pred HHHHHHhhcc-------ccEEEecCCc
Q 001559 650 HKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
.+++.++++. .|++|++++.
T Consensus 327 ~~~~~~~~~~~~~~~g~id~li~nAg~ 353 (520)
T PRK06484 327 EAAVESAFAQIQARWGRLDVLVNNAGI 353 (520)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9887766643 6999999864
No 393
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.014 Score=63.88 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=59.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccE-EEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
+.++|+|.| +|++|+.+++.|++.| . + |.+++|+.++.+++...+ .++..+.+|
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G-~-------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 64 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERG-A-------------------AGLVICGRNAEKGEAQAAELEALGAKAVFVQAD 64 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-C-------------------CeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 457899999 6999999999999887 2 5 889999877666544332 235668899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.+++. +.|+||+++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~g~id~li~~ag~ 94 (260)
T PRK06198 65 LSDVEDCRRVVAAADEAFGRLDALVNAAGL 94 (260)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 999888776654 47999999864
No 394
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.19 E-value=0.018 Score=63.49 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=59.4
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH--HHHHHHHhcCC-CceEEEec
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIEGIP-NAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~~~~-~~~~~~~d 646 (1053)
+.+.++|.|+ +++|+++++.|++.| .+|.+.+|+. +.++++.+.++ ++..+.+|
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G--------------------~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D 65 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQG--------------------AEVVLTGFGRALRLTERIAKRLPEPAPVLELD 65 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCC--------------------CEEEEecCccchhHHHHHHHhcCCCCcEEeCC
Confidence 3578999995 799999999999987 3788888763 44566666554 36688999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 66 v~~~~~i~~~~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 66 VTNEEHLASLADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEEcccc
Confidence 999888766543 47999999875
No 395
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.18 E-value=0.017 Score=63.73 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC---CHHHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL---YLKDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r---~~~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|+ +++|+++|+.|++.| .+|.+++| +.++++++.+.++....+.+|
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREG--------------------AELAFTYVGDRFKDRITEFAAEFGSDLVFPCD 64 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCC--------------------CeEEEEccchHHHHHHHHHHHhcCCcceeecc
Confidence 3578999993 699999999999987 36777654 455666666655544567899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 65 v~d~~~v~~~~~~~~~~~g~iD~lvnnAG~ 94 (260)
T PRK06997 65 VASDEQIDALFASLGQHWDGLDGLVHSIGF 94 (260)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEcccc
Confidence 999988876654 47999999875
No 396
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.18 E-value=0.017 Score=62.78 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=56.4
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++|+|.| +|++|+.+++.|++.| + +|.+. .|+.++++++...+ .++..+.+|+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g-~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 61 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG-W-------------------SVGINYARDAAAAEETADAVRAAGGRACVVAGDV 61 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC-C-------------------EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 46799999 6999999999999987 2 56554 56666665554332 2467889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 62 ANEADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 99887766554 47999999864
No 397
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.022 Score=63.32 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=70.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.+||+|.||++++.-|.+.+.. ...+|.|.+|+.++++++.+.++.. . . .+.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~----------------~~~~I~v~~~~~e~~~~l~~~~g~~-~----~---~~~ 56 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGAL----------------PPEEIIVTNRSEEKRAALAAEYGVV-T----T---TDN 56 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCC----------------CcceEEEeCCCHHHHHHHHHHcCCc-c----c---CcH
Confidence 46899999999999999999988732 1248999999999998888888632 1 1 223
Q ss_pred HHhhccccEEEecCCccccHHHHHHH--HHhCCeEEEeec
Q 001559 654 CKCISQVEIVISLLPASCHVMVANAC--IEFKKHLVTASY 691 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~ac--i~~g~~~vD~sy 691 (1053)
.+...++|+|+-++.+.....+...+ +..++++|.+.-
T Consensus 57 ~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISiaA 96 (266)
T COG0345 57 QEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIAA 96 (266)
T ss_pred HHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEeC
Confidence 46677899999999776555665554 346788888753
No 398
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.18 E-value=0.015 Score=68.59 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|+|+|.+|+.++..+...| .+|.|+++++.+++.... ++ +... +
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--------------------a~ViV~d~d~~R~~~A~~-~G-~~~~-----~- 250 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--------------------ARVIVTEVDPICALQAAM-EG-YEVM-----T- 250 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEECChhhHHHHHh-cC-CEEc-----c-
Confidence 456889999999999999999998887 378999999888765443 22 3222 1
Q ss_pred HHHHHhhccccEEEecCCc
Q 001559 651 KSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~ 669 (1053)
+.+.++++|+||+|++.
T Consensus 251 --~~e~v~~aDVVI~atG~ 267 (413)
T cd00401 251 --MEEAVKEGDIFVTTTGN 267 (413)
T ss_pred --HHHHHcCCCEEEECCCC
Confidence 23566789999999864
No 399
>PRK07574 formate dehydrogenase; Provisional
Probab=96.18 E-value=0.017 Score=67.58 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|.|||+|.+|+.+|+.|...| .+|.+.+|+....+ ..... ++.. ..
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~fG--------------------~~V~~~dr~~~~~~-~~~~~-g~~~-------~~ 240 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPFD--------------------VKLHYTDRHRLPEE-VEQEL-GLTY-------HV 240 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--------------------CEEEEECCCCCchh-hHhhc-Ccee-------cC
Confidence 45688999999999999999998876 48999998753222 11121 1111 23
Q ss_pred HHHHhhccccEEEecCCccccH-HH----HHHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHV-MV----ANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~-~v----~~aci~~g~~~vD~s 690 (1053)
++.++++++|+|+.++|..-.. .+ ..+.++.|.-+|+++
T Consensus 241 ~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 241 SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 5788999999999999965321 11 123355666666665
No 400
>PRK05599 hypothetical protein; Provisional
Probab=96.17 E-value=0.017 Score=63.24 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=57.9
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-----CceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-----NAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-----~~~~~~~d~~ 648 (1053)
|.++|.| ++++|+++++.|++ | .+|.+++|+.++++++.+.+. .+..+.+|++
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g--------------------~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~ 59 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-G--------------------EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQ 59 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-C--------------------CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccC
Confidence 4688998 68999999999984 6 278999999998887765432 2567899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|++|++++.
T Consensus 60 d~~~v~~~~~~~~~~~g~id~lv~nag~ 87 (246)
T PRK05599 60 DLDTHRELVKQTQELAGEISLAVVAFGI 87 (246)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEecCc
Confidence 9887765543 47999998765
No 401
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.17 E-value=0.025 Score=60.67 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.++++|+|+|+|.+|..-++.|.+.| ..|+|++.+.. ..+++++. .+++.+.-+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g--------------------a~VtVvsp~~~~~l~~l~~~-~~i~~~~~~~~-- 63 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG--------------------AQLRVIAEELESELTLLAEQ-GGITWLARCFD-- 63 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC--------------------CEEEEEcCCCCHHHHHHHHc-CCEEEEeCCCC--
Confidence 45689999999999999999999987 37899887653 44555544 25665554442
Q ss_pred HHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeE
Q 001559 651 KSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHL 686 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~ 686 (1053)
...+.++|+||-+++.. .+..+...|.+.|+.+
T Consensus 64 ---~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 64 ---ADILEGAFLVIAATDDEELNRRVAHAARARGVPV 97 (205)
T ss_pred ---HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEE
Confidence 23467899999998875 5667777777777665
No 402
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.16 E-value=0.026 Score=66.38 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
...+++|+|+|+|.+|+.++..+...| .+|.|+++++.++.+.... ++.+. +
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~G--------------------a~ViV~d~dp~r~~~A~~~--G~~v~-----~- 243 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMG--------------------ARVIVTEVDPIRALEAAMD--GFRVM-----T- 243 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCc--------------------CEEEEEeCChhhHHHHHhc--CCEeC-----C-
Confidence 356789999999999999999998776 3899999998876543332 23221 1
Q ss_pred HHHHHhhccccEEEecCCccccH-HHHHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCHV-MVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~-~v~~aci~~g~~~vD~sy 691 (1053)
+.+.++++|+||++++..-.. .-...+++.|..++.++.
T Consensus 244 --leeal~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 244 --MEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred --HHHHHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 345678899999998642111 112234556666665553
No 403
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.018 Score=72.19 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=64.5
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+++.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 428 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAG--------------------ATVFLVARNGEALDELVAEIRAKGGTAHAYTCD 428 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3467899999 6999999999999987 38999999998887766543 346778999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.++++ ..|+||++++..
T Consensus 429 v~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 459 (657)
T PRK07201 429 LTDSAAVDHTVKDILAEHGHVDYLVNNAGRS 459 (657)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 999988877766 479999999753
No 404
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.15 E-value=0.031 Score=69.70 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=65.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
..+|+|+|+|++|+.+++.|.+.+ ++++++|.|+++++++.+. +..++..|.+|.+.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--------------------~~vvvID~d~~~v~~~~~~--g~~v~~GDat~~~~L 457 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG--------------------VKMTVLDHDPDHIETLRKF--GMKVFYGDATRMDLL 457 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC--------------------CCEEEEECCHHHHHHHHhc--CCeEEEEeCCCHHHH
Confidence 468999999999999999999876 4799999999999988653 578899999999988
Q ss_pred H-HhhccccEEEecCCcc
Q 001559 654 C-KCISQVEIVISLLPAS 670 (1053)
Q Consensus 654 ~-~~i~~~DvVI~~~p~~ 670 (1053)
+ .-++++|+||.+++..
T Consensus 458 ~~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 458 ESAGAAKAEVLINAIDDP 475 (621)
T ss_pred HhcCCCcCCEEEEEeCCH
Confidence 8 5688999999999754
No 405
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.0098 Score=67.04 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=60.2
Q ss_pred CCCCCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
..++++|+|||. |.+|++++..|.+.+ ..|+++++..
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~g--------------------atVtv~~~~t---------------------- 193 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAH--------------------CSVTVVHSRS---------------------- 193 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCC--------------------CEEEEECCCC----------------------
Confidence 567899999997 599999999999887 3899997642
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeecc
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~ 692 (1053)
.++.+.++++|+||.+++..- .+-...++.|+.++|++.+
T Consensus 194 -~~l~e~~~~ADIVIsavg~~~--~v~~~~ik~GaiVIDvgin 233 (301)
T PRK14194 194 -TDAKALCRQADIVVAAVGRPR--LIDADWLKPGAVVIDVGIN 233 (301)
T ss_pred -CCHHHHHhcCCEEEEecCChh--cccHhhccCCcEEEEeccc
Confidence 135677889999999998642 2223348899999999854
No 406
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=96.13 E-value=0.017 Score=72.74 Aligned_cols=79 Identities=30% Similarity=0.419 Sum_probs=63.2
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~ 644 (1053)
...++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ + ++..+.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~G--------------------a~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~ 471 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEG--------------------AHVVLADLNLEAAEAVAAEINGQFGAGRAVALK 471 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCC--------------------CEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 3567899999 6999999999999987 38999999988877665432 1 355788
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|++|.+++.++++ +.|+||++++..
T Consensus 472 ~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~~ 504 (676)
T TIGR02632 472 MDVTDEQAVKAAFADVALAYGGVDIVVNNAGIA 504 (676)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 99999988877766 579999998753
No 407
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.13 E-value=0.061 Score=61.26 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=52.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce-----EEEecCCC
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE-----AVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~-----~~~~d~~d 649 (1053)
++|.|||+|++|+.++..|+..+.. .+|.++|++.++++.++..+.+.. ...+-..+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~------------------~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~ 62 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA------------------DELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGD 62 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC------------------CEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCC
Confidence 3799999999999999999987721 379999999998887776542110 01111122
Q ss_pred HHHHHHhhccccEEEecCCc
Q 001559 650 HKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~ 669 (1053)
. +.++++|+||++++.
T Consensus 63 ~----~~l~~aDIVIitag~ 78 (306)
T cd05291 63 Y----SDCKDADIVVITAGA 78 (306)
T ss_pred H----HHhCCCCEEEEccCC
Confidence 2 336899999999975
No 408
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=96.13 E-value=0.041 Score=70.66 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=88.2
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccE-EEEEECCHHH-------HHHHHhcCCCceEEE
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKD-------AEEVIEGIPNAEAVQ 644 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~-------a~~l~~~~~~~~~~~ 644 (1053)
+..+|.|+|.|.+|+.+++.|.++... ...+ .. +++ +.|++++... ...+...... .
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~----l~~~-~~------~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~---~- 528 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPW----LKKK-NI------DLRVCGIANSRKMLLDEHGIDLDNWREELAE---A- 528 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHH----HHhc-CC------cEEEEEEEcCCccccCCCCCCHHHHHHHHhh---c-
Confidence 568899999999999999998765310 0001 11 122 3344543210 0111111100 0
Q ss_pred ecCCCHHHHHHhhc----cccEEEecCCccccHHHHHHHHHhCCeEEEeec--cC---hhHHHHHHHHHHcCCeEEecCC
Q 001559 645 LDVSDHKSLCKCIS----QVEIVISLLPASCHVMVANACIEFKKHLVTASY--ID---DSMSKLDEKAKGAGITILGEMG 715 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~----~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy--~~---~~~~~L~~~Ak~~Gv~~l~g~G 715 (1053)
....+.+.+.+.+. ..|+||+|++..........+++.|+|+|+.+= .. ..-.+|.+.|++.|+.+..++-
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeat 608 (819)
T PRK09436 529 GEPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETN 608 (819)
T ss_pred cCCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeee
Confidence 01113445556665 369999999864333344689999999999862 22 3557888999999999997654
Q ss_pred CChhHHHHHHHHHHHHhhhccCceEEEEe
Q 001559 716 LDPGIDHMMAMKMINHAHVRKGKIKSFTS 744 (1053)
Q Consensus 716 ~dPGi~~mla~~~i~~~~~~~~~v~sf~~ 744 (1053)
+.-|+.-+- .+.++...+++|.+++-
T Consensus 609 V~~giPii~---~l~~~~~~g~~i~~i~G 634 (819)
T PRK09436 609 VGAGLPVIE---TLQNLLNAGDELLKFEG 634 (819)
T ss_pred eccccchHH---HHHHHHhccCcEEEEEE
Confidence 433433221 11222224566777653
No 409
>PRK08324 short chain dehydrogenase; Validated
Probab=96.12 E-value=0.018 Score=72.61 Aligned_cols=78 Identities=28% Similarity=0.336 Sum_probs=63.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~ 648 (1053)
.+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+. ++..+.+|++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G--------------------a~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvt 480 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG--------------------ACVVLADLDEEAAEAAAAELGGPDRALGVACDVT 480 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc--------------------CEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCC
Confidence 457899999 6999999999999887 379999999988877765543 4678889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ +.|+||++++..
T Consensus 481 d~~~v~~~~~~~~~~~g~iDvvI~~AG~~ 509 (681)
T PRK08324 481 DEAAVQAAFEEAALAFGGVDIVVSNAGIA 509 (681)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 9888776665 579999999753
No 410
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.11 E-value=0.03 Score=62.43 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=56.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++|||.| ||++|+..+..|.+.| .+|.|.|.-..--.+.+.... +++++.|+.|.+.|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G--------------------~~vvV~DNL~~g~~~~v~~~~-~~f~~gDi~D~~~L 59 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG--------------------HEVVVLDNLSNGHKIALLKLQ-FKFYEGDLLDRALL 59 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC--------------------CeEEEEecCCCCCHHHhhhcc-CceEEeccccHHHH
Confidence 5799997 9999999999999987 378888873222122222111 57889999999999
Q ss_pred HHhhcc--ccEEEecCCc
Q 001559 654 CKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~--~DvVI~~~p~ 669 (1053)
.+.+++ .|.||..+..
T Consensus 60 ~~vf~~~~idaViHFAa~ 77 (329)
T COG1087 60 TAVFEENKIDAVVHFAAS 77 (329)
T ss_pred HHHHHhcCCCEEEECccc
Confidence 999885 7999998854
No 411
>PRK06484 short chain dehydrogenase; Validated
Probab=96.11 E-value=0.019 Score=69.82 Aligned_cols=77 Identities=25% Similarity=0.401 Sum_probs=62.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
+.+.++|.| ++++|+++++.|++.| .+|.+++|+.++++++.+.+. ++..+.+|++|.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 63 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG--------------------DQVVVADRNVERARERADSLGPDHHALAMDVSDE 63 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCH
Confidence 457889999 6999999999999988 378999999998888777653 456788999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|++||+++.
T Consensus 64 ~~~~~~~~~~~~~~g~iD~li~nag~ 89 (520)
T PRK06484 64 AQIREGFEQLHREFGRIDVLVNNAGV 89 (520)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 88766654 37999999864
No 412
>PLN02572 UDP-sulfoquinovose synthase
Probab=96.11 E-value=0.021 Score=68.35 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=57.2
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--------------------H
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--------------------D 629 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--------------------~ 629 (1053)
..++++|+|.| +|++|+.+++.|++.| .+|.++|+... +
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G--------------------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRG--------------------YEVAIVDNLCRRLFDHQLGLDSLTPIASIHER 103 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCC--------------------CeEEEEeccccccccccccccccccccchHHH
Confidence 35678999999 7999999999999887 36777764211 1
Q ss_pred HHHHHhc-CCCceEEEecCCCHHHHHHhhcc--ccEEEecCC
Q 001559 630 AEEVIEG-IPNAEAVQLDVSDHKSLCKCISQ--VEIVISLLP 668 (1053)
Q Consensus 630 a~~l~~~-~~~~~~~~~d~~d~~~l~~~i~~--~DvVI~~~p 668 (1053)
.+.+... ..+++.+.+|++|.+.+.+++++ +|+||+++.
T Consensus 104 l~~~~~~~~~~v~~v~~Dl~d~~~v~~~l~~~~~D~ViHlAa 145 (442)
T PLN02572 104 VRRWKEVSGKEIELYVGDICDFEFLSEAFKSFEPDAVVHFGE 145 (442)
T ss_pred HHHHHHhhCCcceEEECCCCCHHHHHHHHHhCCCCEEEECCC
Confidence 1111111 12578889999999999988884 799999883
No 413
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.11 E-value=0.063 Score=61.49 Aligned_cols=137 Identities=13% Similarity=0.045 Sum_probs=78.7
Q ss_pred CCCCCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH--HHHhcCCCceEEEecC
Q 001559 571 TKGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE--EVIEGIPNAEAVQLDV 647 (1053)
Q Consensus 571 ~~~~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~--~l~~~~~~~~~~~~d~ 647 (1053)
-.++.||+|+|+ |.+|+.++..|+..+.. .++.++|++..+++ .+....+ .....+.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~------------------~elvL~Di~~~~g~a~Dl~~~~~--~~~v~~~ 64 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHV------------------SELSLYDIVGAPGVAADLSHIDT--PAKVTGY 64 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCC------------------CEEEEEecCCCcccccchhhcCc--CceEEEe
Confidence 357889999997 99999999999866522 37889998432222 2222222 2233455
Q ss_pred CCHHHHHHhhccccEEEecCCcccc----------------HHHHHHHHHhCCe-EEEeeccChhHHH-HHH--HHHHcC
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCH----------------VMVANACIEFKKH-LVTASYIDDSMSK-LDE--KAKGAG 707 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~----------------~~v~~aci~~g~~-~vD~sy~~~~~~~-L~~--~Ak~~G 707 (1053)
+|..+..+.++++|+||.+++.... ..++.+..+++.+ ++-++.+|-+... +.. ..+..|
T Consensus 65 td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg 144 (321)
T PTZ00325 65 ADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGV 144 (321)
T ss_pred cCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccC
Confidence 5545556788999999999864321 1233444556653 4444444433322 211 123344
Q ss_pred CeE--EecCCCChhHHHHHHHHHHH
Q 001559 708 ITI--LGEMGLDPGIDHMMAMKMIN 730 (1053)
Q Consensus 708 v~~--l~g~G~dPGi~~mla~~~i~ 730 (1053)
..- +.|+| .+|.+-.++.+.
T Consensus 145 ~p~~~viG~g---~LDs~R~r~~la 166 (321)
T PTZ00325 145 YDPRKLFGVT---TLDVVRARKFVA 166 (321)
T ss_pred CChhheeech---hHHHHHHHHHHH
Confidence 322 33344 488777776553
No 414
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.10 E-value=0.03 Score=62.99 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=54.4
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH-HHHHHh--cCCCceEEEecCCCHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD-AEEVIE--GIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~-a~~l~~--~~~~~~~~~~d~~d~~ 651 (1053)
+|+|+| +|++|+.+++.|.+.+ .+|.+.+|...+ .+.+.. ..++++.+.+|+++.+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 60 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG--------------------HEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRE 60 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC--------------------CeEEEEeCCCccchhhhhhhccccceEEEECCCCCHH
Confidence 589998 7999999999999887 267777653222 222111 1124667889999999
Q ss_pred HHHHhhc--cccEEEecCCcc
Q 001559 652 SLCKCIS--QVEIVISLLPAS 670 (1053)
Q Consensus 652 ~l~~~i~--~~DvVI~~~p~~ 670 (1053)
++.++++ +.|+||++++..
T Consensus 61 ~~~~~~~~~~~d~vv~~ag~~ 81 (328)
T TIGR01179 61 LLDRLFEEHKIDAVIHFAGLI 81 (328)
T ss_pred HHHHHHHhCCCcEEEECcccc
Confidence 9988886 689999999753
No 415
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.10 E-value=0.047 Score=66.12 Aligned_cols=98 Identities=22% Similarity=0.199 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH- 650 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~- 650 (1053)
....+|+|+|+|.+|..++..+...| ..|.++|++.++.+...+ ++ ++.+.+|..+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--------------------A~V~a~D~~~~rle~aes-lG-A~~v~i~~~e~~ 220 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--------------------AIVRAFDTRPEVAEQVES-MG-AEFLELDFEEEG 220 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHH-cC-CeEEEecccccc
Confidence 34789999999999999999988887 279999999988775444 43 44443433210
Q ss_pred ------------H-------HHHHhhccccEEEecCCccc--cH----HHHHHHHHhCCeEEEeec
Q 001559 651 ------------K-------SLCKCISQVEIVISLLPASC--HV----MVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ------------~-------~l~~~i~~~DvVI~~~p~~~--~~----~v~~aci~~g~~~vD~sy 691 (1053)
+ .+.+.++++|+||+|+...- .+ .-+-.+++.|..++|++.
T Consensus 221 ~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 221 GSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1 12233467999999996422 22 233456788889999985
No 416
>PRK12937 short chain dehydrogenase; Provisional
Probab=96.10 E-value=0.03 Score=60.47 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=57.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
+.++++|.| +|++|+.+++.|++.| .++.++.| +..+++++.+.+ .++..+.+|
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADG--------------------FAVAVNYAGSAAAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 457899999 7999999999999987 25666555 344444444332 246778899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 64 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 64 VADAAAVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 999988877766 57999999864
No 417
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.09 E-value=0.017 Score=64.73 Aligned_cols=78 Identities=13% Similarity=0.243 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCch-hhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIGAGR-VCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~-vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
+.++++|+|+|.|. +|++++..|...+ ..|+++.+..
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~g--------------------atVtv~~s~t---------------------- 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKN--------------------ASVTILHSRS---------------------- 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCC--------------------CeEEEEeCCc----------------------
Confidence 56789999999877 9999999998876 3788887631
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccC
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID 693 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~ 693 (1053)
.+|.+.++++|+||+++|..- .+...-++.|+.++|++..+
T Consensus 193 -~~l~~~~~~ADIVIsAvg~p~--~i~~~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 193 -KDMASYLKDADVIVSAVGKPG--LVTKDVVKEGAVIIDVGNTP 233 (286)
T ss_pred -hhHHHHHhhCCEEEECCCCCc--ccCHHHcCCCcEEEEcCCCc
Confidence 246778899999999997642 12334578899999998654
No 418
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.09 E-value=0.016 Score=67.04 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE----E--Ee
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA----V--QL 645 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~----~--~~ 645 (1053)
+++++|.|||+|.+|.+++..|++.+ .+.++.|+.+.++++.+...+... . ..
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g---------------------~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~ 63 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG---------------------PTLQWVRSAETADDINDNHRNSRYLGNDVVLSD 63 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC---------------------CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCC
Confidence 45789999999999999999999876 356677998888877654211110 0 00
Q ss_pred cCCCHHHHHHhhccccEEEecCCccccHHHHHH
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCHVMVANA 678 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a 678 (1053)
.+.-..++.+.++++|+||-++|......+.+.
T Consensus 64 ~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~ 96 (341)
T PRK12439 64 TLRATTDFAEAANCADVVVMGVPSHGFRGVLTE 96 (341)
T ss_pred CeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHH
Confidence 111113455667899999999997655444433
No 419
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.08 E-value=0.018 Score=66.66 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=61.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcCCC---------ceEE
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGIPN---------AEAV 643 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~~~---------~~~~ 643 (1053)
+||+|+| .|++|+.+++.|.+++.+ ++..+ ++..+..+.+.+.++. ....
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~-------------------~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 61 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF-------------------ELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDL 61 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc-------------------eEEEEEEChhhcCCcchhhccccccCCCcccccee
Confidence 4799999 599999999999887632 44433 5443332333222221 1111
Q ss_pred EecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.+.-.+.+ ...++|+|+.|+|...+..+..++.++|++++|.|
T Consensus 62 ~~~~~~~~----~~~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDls 104 (341)
T TIGR00978 62 PIVEPEPV----ASKDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNA 104 (341)
T ss_pred EEEeCCHH----HhccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECC
Confidence 11111222 34689999999999998888888899999999997
No 420
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.08 E-value=0.025 Score=61.96 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=56.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--HHHHHHhcCCCceEEEecCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--DAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--~a~~l~~~~~~~~~~~~d~~ 648 (1053)
.+++.++|.| +|++|+++++.|++.| .+|.+.+++.. ..+++.+.-.++..+++|++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G--------------------~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 67 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAG--------------------CDIVGINIVEPTETIEQVTALGRRFLSLTADLR 67 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEecCcchHHHHHHHHhcCCeEEEEECCCC
Confidence 3457899999 7999999999999987 36776666432 22333222224667889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.++++ ..|++|++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~D~li~~Ag~ 95 (253)
T PRK08993 68 KIDGIPALLERAVAEFGHIDILVNNAGL 95 (253)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 9888877665 47999999864
No 421
>PRK07791 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.018 Score=64.58 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=57.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---------HHHHHHHhcC----C
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---------KDAEEVIEGI----P 638 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---------~~a~~l~~~~----~ 638 (1053)
+.+.++|.| ++++|+.+++.|++.| .+|.+++|+. ++++++.+.+ .
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G--------------------~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 64 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEG--------------------ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG 64 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEeeCCccccccccchhHHHHHHHHHHhcCC
Confidence 357899998 7999999999999987 3788887765 5555555433 2
Q ss_pred CceEEEecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 639 NAEAVQLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 639 ~~~~~~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++..+.+|++|.+++.++++ ..|++||+++.
T Consensus 65 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 65 EAVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 35678899999887765543 46999999865
No 422
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.05 E-value=0.031 Score=61.71 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred CCCeEEEEcCc---hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---HHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGAG---RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGaG---~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|++ ++|+++|+.|++.| .+|.+.+|+. +.++++.+..+....+++|
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G--------------------~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~D 66 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHG--------------------AELWFTYQSEVLEKRVKPLAEEIGCNFVSELD 66 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcC--------------------CEEEEEeCchHHHHHHHHHHHhcCCceEEEcc
Confidence 45778899964 79999999999987 3788888873 2344444443333356899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 67 v~~~~~v~~~~~~~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 67 VTNPKSISNLFDDIKEKWGSFDFLLHGMAF 96 (260)
T ss_pred CCCHHHHHHHHHHHHHHcCCccEEEEcccc
Confidence 999888776654 37999998754
No 423
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.05 E-value=0.024 Score=63.10 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=47.9
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
+|+|+| +|++|+.+++.|.+.| .+|.+++|. ..|+.|.+.+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g--------------------~~v~~~~r~-----------------~~d~~~~~~~~ 43 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG--------------------RVVVALTSS-----------------QLDLTDPEALE 43 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC--------------------CEEEEeCCc-----------------ccCCCCHHHHH
Confidence 589999 6999999999999887 378888874 35788889999
Q ss_pred Hhhccc--cEEEecCCc
Q 001559 655 KCISQV--EIVISLLPA 669 (1053)
Q Consensus 655 ~~i~~~--DvVI~~~p~ 669 (1053)
+.++++ |+||++++.
T Consensus 44 ~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 44 RLLRAIRPDAVVNTAAY 60 (287)
T ss_pred HHHHhCCCCEEEECCcc
Confidence 888876 999999864
No 424
>PLN03139 formate dehydrogenase; Provisional
Probab=96.05 E-value=0.024 Score=66.41 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|.|||+|.+|+.+++.|...| .+|.+++|+....+. .... ++.. .
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG--------------------~~V~~~d~~~~~~~~-~~~~-g~~~-------~ 246 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFN--------------------CNLLYHDRLKMDPEL-EKET-GAKF-------E 246 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCC--------------------CEEEEECCCCcchhh-Hhhc-Ccee-------c
Confidence 356789999999999999999998876 478889987533222 1111 1111 1
Q ss_pred HHHHHhhccccEEEecCCccccH-H-H---HHHHHHhCCeEEEee
Q 001559 651 KSLCKCISQVEIVISLLPASCHV-M-V---ANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~-~-v---~~aci~~g~~~vD~s 690 (1053)
+++.++++++|+|+.++|..-.. . + ..+.++.|..+|+++
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 35788999999999999964321 1 1 223445666666665
No 425
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.04 E-value=0.013 Score=65.96 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=43.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|||+|+| .|.+|++++++|.+.+ ..+...+|. .+|++|.+.+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~--------------------~~v~~~~r~-----------------~~dl~d~~~~ 43 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG--------------------YEVIATSRS-----------------DLDLTDPEAV 43 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS--------------------EEEEEESTT-----------------CS-TTSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC--------------------CEEEEeCch-----------------hcCCCCHHHH
Confidence 6899999 6999999999998765 366666665 3678899999
Q ss_pred HHhhcc--ccEEEecCCc
Q 001559 654 CKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~--~DvVI~~~p~ 669 (1053)
.+.+++ .|+||||+..
T Consensus 44 ~~~~~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 44 AKLLEAFKPDVVINCAAY 61 (286)
T ss_dssp HHHHHHH--SEEEE----
T ss_pred HHHHHHhCCCeEecccee
Confidence 988875 7999999864
No 426
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.04 E-value=0.015 Score=60.37 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=64.5
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEec----
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLD---- 646 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d---- 646 (1053)
..+..+|+|+|+|.+|..+++.|...| .++++.+.++++.+++-.... ..+..+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG--------------------a~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~ 74 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLG--------------------AEVVVPDERPERLRQLESLGA--YFIEVDYEDH 74 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT---------------------EEEEEESSHHHHHHHHHTTT--EESEETTTTT
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCC--------------------CEEEeccCCHHHHHhhhcccC--ceEEEccccc
Confidence 456789999999999999999999987 489999999988877655433 223232
Q ss_pred ---------------CCCHHHHHHhhccccEEEecC--CccccH----HHHHHHHHhCCeEEEee
Q 001559 647 ---------------VSDHKSLCKCISQVEIVISLL--PASCHV----MVANACIEFKKHLVTAS 690 (1053)
Q Consensus 647 ---------------~~d~~~l~~~i~~~DvVI~~~--p~~~~~----~v~~aci~~g~~~vD~s 690 (1053)
......+.+.++.+|+||.+. |..-.+ .-....++.|..++|+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 75 LERKDFDKADYYEHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp TTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred ccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 113356788889999999654 221112 12233466777788876
No 427
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.03 E-value=0.023 Score=67.30 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|.+|+.++..|...| .+|.++++++.++.+.... ++++.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--------------------a~ViV~d~dp~ra~~A~~~--G~~v~-------- 259 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--------------------ARVIVTEVDPICALQAAMD--GFRVM-------- 259 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--------------------CEEEEEcCCchhhHHHHhc--CCEec--------
Confidence 46789999999999999999998887 3899999998876554332 22221
Q ss_pred HHHHhhccccEEEecCCc
Q 001559 652 SLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~ 669 (1053)
.+.++++++|+||++++.
T Consensus 260 ~l~eal~~aDVVI~aTG~ 277 (425)
T PRK05476 260 TMEEAAELGDIFVTATGN 277 (425)
T ss_pred CHHHHHhCCCEEEECCCC
Confidence 245667799999999864
No 428
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.03 E-value=0.022 Score=64.62 Aligned_cols=79 Identities=25% Similarity=0.311 Sum_probs=59.4
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-HHHHHHHHhcC----CCceEEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEGI----PNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~~----~~~~~~~ 644 (1053)
..+.+.++|.| +|++|+.+++.|++.| .+|.+.+++ .++++++++.+ .++..+.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~G--------------------a~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 68 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLG--------------------ATVVVNDVASALDASDVLDEIRAAGAKAVAVA 68 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEecCCchhHHHHHHHHHHhcCCeEEEEe
Confidence 34568899999 6999999999999987 378888774 34454444332 2466788
Q ss_pred ecCCCHHHHHHhhc------cccEEEecCCc
Q 001559 645 LDVSDHKSLCKCIS------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~------~~DvVI~~~p~ 669 (1053)
+|++|.+++.++++ ..|+||++++.
T Consensus 69 ~Dv~d~~~~~~~~~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 69 GDISQRATADELVATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 99999888777664 47999999865
No 429
>PLN02712 arogenate dehydrogenase
Probab=96.03 E-value=0.036 Score=69.52 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.++++|.|||+|.+|..++..|.+.| .+|.+++|+..+ +.+..+. +.. ..+
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G--------------------~~V~~~dr~~~~--~~A~~~G-v~~----~~d-- 100 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQG--------------------HTVLAHSRSDHS--LAARSLG-VSF----FLD-- 100 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHH--HHHHHcC-CEE----eCC--
Confidence 45679999999999999999999886 378999998543 2233332 221 222
Q ss_pred HHHHhh-ccccEEEecCCccccHHHHHH----HHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEec
Q 001559 652 SLCKCI-SQVEIVISLLPASCHVMVANA----CIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 652 ~l~~~i-~~~DvVI~~~p~~~~~~v~~a----ci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
+.+++ .++|+||-|+|......++.. .++.|+.++|++-......+..+.....|..++..
T Consensus 101 -~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~ 166 (667)
T PLN02712 101 -PHDLCERHPDVILLCTSIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICS 166 (667)
T ss_pred -HHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEee
Confidence 33433 469999999998654444433 24567889999765433322222333335555543
No 430
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=96.02 E-value=0.021 Score=61.92 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=58.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
+.+.++|.| +|++|+.+++.|+++| . .|.+. .|+.++.+++.+.+ .++..+.+|
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g-~-------------------~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEG-A-------------------KVVINYNSSKEAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-C-------------------EEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECC
Confidence 457899999 7999999999999887 2 55554 45556555554332 246778999
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++++ .|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 65 VSKVEDANRLVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9999888877765 6999999865
No 431
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.02 E-value=0.022 Score=63.78 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=58.5
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
+|+|.| +|++|+.+++.|.+.| .+|..++|......... .+++.+.+|.+|.+...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~---~~~~~~~~d~~~~~~~~ 58 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG--------------------HDVRGLDRLRDGLDPLL---SGVEFVVLDLTDRDLVD 58 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC--------------------CeEEEEeCCCccccccc---cccceeeecccchHHHH
Confidence 499999 6999999999999886 38999999766544333 45677888988887788
Q ss_pred Hhhccc-cEEEecCCccc
Q 001559 655 KCISQV-EIVISLLPASC 671 (1053)
Q Consensus 655 ~~i~~~-DvVI~~~p~~~ 671 (1053)
+.++.+ |+||+++....
T Consensus 59 ~~~~~~~d~vih~aa~~~ 76 (314)
T COG0451 59 ELAKGVPDAVIHLAAQSS 76 (314)
T ss_pred HHHhcCCCEEEEccccCc
Confidence 888888 99999986543
No 432
>PRK07069 short chain dehydrogenase; Validated
Probab=96.01 E-value=0.018 Score=62.55 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=56.4
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-HHHHHHHHhcCC------CceEEEecC
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEGIP------NAEAVQLDV 647 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~~~------~~~~~~~d~ 647 (1053)
+|+|.| +|++|+.+++.|++.| .+|.+++|+ .++++++.+.+. .+..+.+|+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 60 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG--------------------AKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDV 60 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeec
Confidence 378998 7999999999999887 378999998 666666654432 123467899
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (251)
T PRK07069 61 TDEAQWQALLAQAADAMGGLSVLVNNAGV 89 (251)
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEECCCc
Confidence 99888776654 46999999864
No 433
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.01 E-value=0.041 Score=58.93 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.+.++|+|+|+|.+|...++.|.+.| .+|+|++++.. .+.+++.. ..+....-.. .
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~g--------------------a~V~VIs~~~~~~l~~l~~~-~~i~~~~~~~-~- 64 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYG--------------------AHIVVISPELTENLVKLVEE-GKIRWKQKEF-E- 64 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------------CeEEEEcCCCCHHHHHHHhC-CCEEEEecCC-C-
Confidence 46789999999999999999999987 27899988653 33444433 2233322111 1
Q ss_pred HHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCC
Q 001559 651 KSLCKCISQVEIVISLLPAS-CHVMVANACIEFKK 684 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~ 684 (1053)
.+.+.++|+||.||+.. .+..+...| +.+.
T Consensus 65 ---~~~l~~adlViaaT~d~elN~~i~~~a-~~~~ 95 (202)
T PRK06718 65 ---PSDIVDAFLVIAATNDPRVNEQVKEDL-PENA 95 (202)
T ss_pred ---hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCC
Confidence 24567899999999754 345556666 4454
No 434
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.00 E-value=0.025 Score=62.13 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=57.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-HHHHHHHHhcC----CCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~~----~~~~~~~~ 645 (1053)
.+.++++|.| +|++|+.+++.|++.| ..|.+..|+ .+.++++.+.+ .++..+.+
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G--------------------~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 64 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEK--------------------AKVVINYRSDEEEANDVAEEIKKAGGEAIAVKG 64 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4568899999 7999999999999987 267777774 44444444322 23567889
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.++++ ..|++|++++.
T Consensus 65 Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 65 DVTVESDVVNLIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9999988776664 36999999864
No 435
>PRK07023 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.021 Score=62.00 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=54.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-CCceEEEecCCCHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-PNAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-~~~~~~~~d~~d~~ 651 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+++|+.++. +.... .++..+.+|++|.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G--------------------~~v~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~ 58 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG--------------------IAVLGVARSRHPS--LAAAAGERLAEVELDLSDAA 58 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC--------------------CEEEEEecCcchh--hhhccCCeEEEEEeccCCHH
Confidence 46899999 6999999999999887 3788888875532 22222 24677899999988
Q ss_pred HHHHhhc-----------cccEEEecCCc
Q 001559 652 SLCKCIS-----------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-----------~~DvVI~~~p~ 669 (1053)
++.+++. ..|++|++++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~v~~ag~ 87 (243)
T PRK07023 59 AAAAWLAGDLLAAFVDGASRVLLINNAGT 87 (243)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEcCcc
Confidence 8776432 35789988764
No 436
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.99 E-value=0.05 Score=65.24 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=81.0
Q ss_pred hhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHHHHHhhccccEE
Q 001559 585 VCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKSLCKCISQVEIV 663 (1053)
Q Consensus 585 vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~l~~~i~~~DvV 663 (1053)
||+++|..|++.| .+|.|.||+.++++++.+... ...+... .+.+++.+.++.+|+|
T Consensus 1 MG~~mA~nL~~~G--------------------~~V~v~nrt~~~~~~l~~~~g~~~g~~~~--~s~~e~v~~l~~~~~I 58 (459)
T PRK09287 1 MGKNLALNIASHG--------------------YTVAVYNRTPEKTDEFLAEEGKGKKIVPA--YTLEEFVASLEKPRKI 58 (459)
T ss_pred CcHHHHHHHHhCC--------------------CeEEEECCCHHHHHHHHHhhCCCCCeEee--CCHHHHHhhCCCCCEE
Confidence 6899999999988 389999999999999987422 1112222 2455555555569999
Q ss_pred EecCCcccc-HHHH---HHHHHhCCeEEEeec-cChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 664 ISLLPASCH-VMVA---NACIEFKKHLVTASY-IDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 664 I~~~p~~~~-~~v~---~aci~~g~~~vD~sy-~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
|.++|.+-. ..+. ...++.|..+||.+- .+.++..+.+.++++|+.++. +|+.-|..
T Consensus 59 i~mv~~g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvd-apVSGG~~ 120 (459)
T PRK09287 59 LLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIG-MGVSGGEE 120 (459)
T ss_pred EEECCCchHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEe-cCCCCCHH
Confidence 999998743 2232 234577899999984 456777888899999998664 77655544
No 437
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=95.97 E-value=0.026 Score=61.38 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=56.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+. . ...-.++..+.+|++|.+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G--------------------~~v~~~~~~~--~---~~~~~~~~~~~~D~~~~~ 61 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAG--------------------AKVIGFDQAF--L---TQEDYPFATFVLDVSDAA 61 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEecch--h---hhcCCceEEEEecCCCHH
Confidence 457899999 6999999999999987 3788888876 1 112234778899999998
Q ss_pred HHHHhhcc-------ccEEEecCCc
Q 001559 652 SLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++.+++++ .|+||+++..
T Consensus 62 ~~~~~~~~~~~~~~~id~vi~~ag~ 86 (252)
T PRK08220 62 AVAQVCQRLLAETGPLDVLVNAAGI 86 (252)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 88877654 6999999864
No 438
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.97 E-value=0.022 Score=64.51 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=57.9
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccE-EEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.||.|+| +|++|..+++.|+.++.+ + +.+.++.. + +..+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~-------------------el~~l~s~~~---------~--------~~~~--- 42 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDI-------------------ELLSIAPDRR---------K--------DAAE--- 42 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCe-------------------EEEEEecccc---------c--------CcCC---
Confidence 4799999 799999999999999743 3 33443321 1 1112
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
..++++++|+|+-|+|.......+..+.+.|+.+||+|
T Consensus 43 ~~~~~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlS 80 (310)
T TIGR01851 43 RAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDAS 80 (310)
T ss_pred HhHhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECC
Confidence 23566789999999999887777777788999999998
No 439
>PRK07041 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.022 Score=61.14 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=58.9
Q ss_pred EEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCCCHHHH
Q 001559 578 LIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 578 lIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~d~~~l 653 (1053)
+|.| +|++|+.+++.|++.| .+|.+++|+.++++.+...+ .++..+.+|++|.+++
T Consensus 1 lItGas~~iG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 60 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG--------------------ARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAV 60 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 4677 7999999999999987 37899999988877766543 3467888999999998
Q ss_pred HHhhcc---ccEEEecCCc
Q 001559 654 CKCISQ---VEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~---~DvVI~~~p~ 669 (1053)
.++++. .|++|++++.
T Consensus 61 ~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 61 DAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 887765 6999999865
No 440
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.96 E-value=0.045 Score=60.75 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=68.7
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|+| +|. |+.+++.|.+.| .+|.+.-++....+.+.. .+ ...+..+..|.+++
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g--------------------~~v~~s~~t~~~~~~~~~-~g-~~~v~~g~l~~~~l 57 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG--------------------IEILVTVTTSEGKHLYPI-HQ-ALTVHTGALDPQEL 57 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC--------------------CeEEEEEccCCccccccc-cC-CceEEECCCCHHHH
Confidence 5799998 488 999999999887 367777777655444333 22 23345666688889
Q ss_pred HHhhcc--ccEEEecCCcc---ccHHHHHHHHHhCCeEEEe
Q 001559 654 CKCISQ--VEIVISLLPAS---CHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 654 ~~~i~~--~DvVI~~~p~~---~~~~v~~aci~~g~~~vD~ 689 (1053)
.+.+++ .|+||+++-++ ++..+..+|-+.|.+|+-.
T Consensus 58 ~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 58 REFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 888875 89999999443 3467789999999999887
No 441
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=95.95 E-value=0.025 Score=61.38 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=55.4
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE-EECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV-ASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v-~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.+.++|.| +|++|+.+++.|++.| . +|.+ .+++..+.++..+.+ .++..+.+|+
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~G-~-------------------~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKDG-F-------------------KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNV 62 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC-C-------------------EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 46789999 7999999999999988 2 5555 445555544443322 2355678999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 92 (246)
T PRK12938 63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGIT 92 (246)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 99988876664 479999998653
No 442
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=95.95 E-value=0.025 Score=60.94 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=56.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcC----CCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
+.++|.| +|++|+.+++.|++.| .+|.+..| +.++++++.... .++..+.+|++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDG--------------------YRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVS 60 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCC
Confidence 4688998 7999999999999887 26777776 666655544322 24678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ ..|+||++++..
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 89 (242)
T TIGR01829 61 SFESCKAAVAKVEAELGPIDVLVNNAGIT 89 (242)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 9887765554 479999998653
No 443
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.95 E-value=0.043 Score=69.11 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=57.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH--HHHHHHHh--cCCCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIE--GIPNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~--~~~~~~~~~~d~ 647 (1053)
+.++|+|.| +|++|+.+++.|.+.+. +.+|.+.+|.. ++...+.. ..++++.+.+|+
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~------------------~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl 66 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYP------------------DYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDI 66 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCC------------------CCEEEEEeCCCccchhhhhhhcccCCCeEEEECCC
Confidence 468999999 79999999999998741 24777788742 22333322 134678889999
Q ss_pred CCHHHHHHhh--ccccEEEecCCc
Q 001559 648 SDHKSLCKCI--SQVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i--~~~DvVI~~~p~ 669 (1053)
+|.+.+.+.+ .++|+||+++..
T Consensus 67 ~d~~~~~~~~~~~~~D~ViHlAa~ 90 (668)
T PLN02260 67 ASADLVNYLLITEGIDTIMHFAAQ 90 (668)
T ss_pred CChHHHHHHHhhcCCCEEEECCCc
Confidence 9988877665 579999999864
No 444
>PRK08703 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.031 Score=60.41 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=56.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~~d 646 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+ +.+..+.+|
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D 64 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAG--------------------ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFD 64 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC--------------------CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEee
Confidence 457899999 6999999999999887 37999999998877665442 235567788
Q ss_pred CCC--HHHHHHhh--------ccccEEEecCCc
Q 001559 647 VSD--HKSLCKCI--------SQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d--~~~l~~~i--------~~~DvVI~~~p~ 669 (1053)
+++ .+++.+++ ...|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 65 LMSAEEKEFEQFAATIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred ecccchHHHHHHHHHHHHHhCCCCCEEEEeccc
Confidence 864 23333322 356999999864
No 445
>PRK06523 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.023 Score=62.25 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=56.3
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.+.++|+|.| +|++|+.+++.|++.| .+|.+++|+.+.. .-.++..+.+|++|.
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~v~~~~r~~~~~-----~~~~~~~~~~D~~~~ 61 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAG--------------------ARVVTTARSRPDD-----LPEGVEFVAADLTTA 61 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCC--------------------CEEEEEeCChhhh-----cCCceeEEecCCCCH
Confidence 3468899999 6999999999999987 3789999986532 112467889999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK06523 62 EGCAAVARAVLERLGGVDILVHVLGG 87 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 87765443 46999999864
No 446
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.93 E-value=0.017 Score=58.19 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=61.4
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
+.++++|+|+| ..-+|++++..|.+.+ ..|++++++-
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~g--------------------atV~~~~~~t---------------------- 62 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDG--------------------ATVYSCDWKT---------------------- 62 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEeCCCC----------------------
Confidence 56789999999 7899999999998876 3788887531
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccC
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID 693 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~ 693 (1053)
.++.+.++++|+||.+++.. ..+-...++.|++++|.....
T Consensus 63 -~~l~~~v~~ADIVvsAtg~~--~~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 63 -IQLQSKVHDADVVVVGSPKP--EKVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred -cCHHHHHhhCCEEEEecCCC--CccCHHHcCCCCEEEEcCCCc
Confidence 23567889999999999865 235566799999999987543
No 447
>PRK12827 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.027 Score=60.87 Aligned_cols=77 Identities=27% Similarity=0.380 Sum_probs=56.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----CHHHHHHHHhcC----CCceEE
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----YLKDAEEVIEGI----PNAEAV 643 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----~~~~a~~l~~~~----~~~~~~ 643 (1053)
++++++|.| +|++|+.+++.|+++| .+|.+++| +.+..+++.+.+ .++..+
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADG--------------------ADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGL 64 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEE
Confidence 357899999 7999999999999987 26666544 444444444332 246788
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+|++|.+++.++++ +.|+||++++.
T Consensus 65 ~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 97 (249)
T PRK12827 65 AFDVRDFAATRAALDAGVEEFGRLDILVNNAGI 97 (249)
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 999999988876653 57999999865
No 448
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.92 E-value=0.033 Score=66.46 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|+|+|.+|+.+|..|...| .+|.++++++.++.+.... +++.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~G--------------------a~ViV~e~dp~~a~~A~~~--G~~~-------- 300 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFG--------------------ARVVVTEIDPICALQAAME--GYQV-------- 300 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCchhHHHHHhc--Ccee--------
Confidence 456789999999999999999998877 3899999987776433221 2322
Q ss_pred HHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeecc
Q 001559 651 KSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy~ 692 (1053)
..+.++++++|+||.+++.. +-..-...+++.|..+++++-.
T Consensus 301 ~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 301 VTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 13567788999999997531 1111122345667777776644
No 449
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.92 E-value=0.021 Score=64.85 Aligned_cols=71 Identities=24% Similarity=0.251 Sum_probs=52.9
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..+.++|.|||.|.+|+++|+.|...| .+|.+.+|.. +..+.+... +++.
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G--------------------~~ViV~~r~~-~s~~~A~~~-G~~v-------- 62 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSG--------------------VEVVVGVRPG-KSFEVAKAD-GFEV-------- 62 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCc--------------------CEEEEEECcc-hhhHHHHHc-CCEE--------
Confidence 467899999999999999999999887 4888888763 333333322 2221
Q ss_pred HHHHHhhccccEEEecCCccc
Q 001559 651 KSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
.++.++++++|+|+.++|...
T Consensus 63 ~sl~Eaak~ADVV~llLPd~~ 83 (335)
T PRK13403 63 MSVSEAVRTAQVVQMLLPDEQ 83 (335)
T ss_pred CCHHHHHhcCCEEEEeCCChH
Confidence 247788999999999999643
No 450
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.90 E-value=0.015 Score=65.63 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcCCCceEEEecCC
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~~~~~~~~~d~~ 648 (1053)
..++++|+|+| .|.+|+++|..|.+.+ ..|++++ |+.
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g--------------------~tVtv~~~rT~--------------------- 193 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAAN--------------------ATVTIAHSRTR--------------------- 193 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCC--------------------CEEEEECCCCC---------------------
Confidence 45689999999 9999999999999887 3899994 542
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeecc
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~ 692 (1053)
++.+.++++|+||.+++..- .+....++.|++++|++.+
T Consensus 194 ---~l~e~~~~ADIVIsavg~~~--~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 194 ---DLPAVCRRADILVAAVGRPE--MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred ---CHHHHHhcCCEEEEecCChh--hcchheecCCCEEEEcCCc
Confidence 24667789999999998642 2333448899999999864
No 451
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.89 E-value=0.023 Score=64.60 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=57.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.+|.|+| +|++|..+++.|.+++. .++.-...+... +..+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~-------------------~~l~~~~s~~~~----------------~~~~--- 43 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD-------------------IELLSIPEAKRK----------------DAAA--- 43 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC-------------------eEEEEEecCCCC----------------cccC---
Confidence 57899999 79999999999999873 244333322111 0011
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
..+..+++|+|+.|+|......++..+.+.|+.+||.|
T Consensus 44 ~~~~~~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlS 81 (313)
T PRK11863 44 RRELLNAADVAILCLPDDAAREAVALIDNPATRVIDAS 81 (313)
T ss_pred chhhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECC
Confidence 12345689999999999888888888889999999998
No 452
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.89 E-value=0.039 Score=59.40 Aligned_cols=77 Identities=29% Similarity=0.312 Sum_probs=56.0
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhc----CCCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEG----IPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~----~~~~~~~~~d 646 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+..|+.. ..+.+... -.++..+.+|
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQG--------------------ANVVINYASSEAGAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcC
Confidence 357899999 7999999999999887 26767666543 33333322 2246677889
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 64 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 64 VSDAESVERAVDEAKAEFGGVDILVNNAGI 93 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 999888776654 47999999864
No 453
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.89 E-value=0.046 Score=65.08 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCc-e--------EE
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNA-E--------AV 643 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~-~--------~~ 643 (1053)
..++|.|||.|++|.++|..|++ + + +|.++|++.++.+++......+ + ..
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~-~-------------------~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g 63 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-S-R-------------------QVVGFDVNKKRILELKNGVDVNLETTEEELREAR 63 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-C-C-------------------EEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC
Confidence 35889999999999999999877 4 3 8999999999999987443210 0 00
Q ss_pred EecCCCHHHHHHhhccccEEEecCCccccH-------HHH------HHHHHhCCeEEEeeccChhH
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPASCHV-------MVA------NACIEFKKHLVTASYIDDSM 696 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-------~v~------~aci~~g~~~vD~sy~~~~~ 696 (1053)
.+-.++. .+.++++|++|.|+|...+. .+. ...++.|..+|+.|.+++.+
T Consensus 64 ~l~~t~~---~~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt 126 (425)
T PRK15182 64 YLKFTSE---IEKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC 126 (425)
T ss_pred CeeEEeC---HHHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence 0001111 23578999999999865321 111 12335677778877665543
No 454
>PLN02206 UDP-glucuronate decarboxylase
Probab=95.88 E-value=0.032 Score=66.78 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=49.9
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhc--CCCceEEEecC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEG--IPNAEAVQLDV 647 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~--~~~~~~~~~d~ 647 (1053)
.+.|||+|.| +|++|+.+++.|.+.| .+|.+++|... +.+.+... .++++.+..|+
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G--------------------~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~ 176 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARG--------------------DSVIVVDNFFTGRKENVMHHFSNPNFELIRHDV 176 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCc--------------------CEEEEEeCCCccchhhhhhhccCCceEEEECCc
Confidence 4568999999 7999999999999987 26777776422 12222222 23466666676
Q ss_pred CCHHHHHHhhccccEEEecCC
Q 001559 648 SDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p 668 (1053)
.+. .+.++|+||+++.
T Consensus 177 ~~~-----~l~~~D~ViHlAa 192 (442)
T PLN02206 177 VEP-----ILLEVDQIYHLAC 192 (442)
T ss_pred cCh-----hhcCCCEEEEeee
Confidence 543 3457999999985
No 455
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.87 E-value=0.027 Score=68.57 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=62.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----------CCc---
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----------PNA--- 640 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----------~~~--- 640 (1053)
.++|.|||+|.||..+|..|+..| ..|++.|++.+.+++..+.+ ...
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG--------------------~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~ 66 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAG--------------------HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE 66 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 468999999999999999999887 48999999999887642111 100
Q ss_pred -------eEEEecCCCHHHHHHhhccccEEEecCCccccH--HH---HHHHHHhCCeE-EEeeccChh
Q 001559 641 -------EAVQLDVSDHKSLCKCISQVEIVISLLPASCHV--MV---ANACIEFKKHL-VTASYIDDS 695 (1053)
Q Consensus 641 -------~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~--~v---~~aci~~g~~~-vD~sy~~~~ 695 (1053)
..... .++.+ ++++|+||.++|-.... .+ .......++.+ .+.|..+..
T Consensus 67 ~~~~~~~~i~~~-----~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~ 128 (507)
T PRK08268 67 QADAALARLRPV-----EALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT 128 (507)
T ss_pred HHHHHHhCeEEe-----CCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 01111 12333 56999999999876542 22 22233455665 367776654
No 456
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.87 E-value=0.036 Score=62.56 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----------CCceE-
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----------PNAEA- 642 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----------~~~~~- 642 (1053)
.++|.|||+|.+|..+|..|+..| .+|.++|++.+++++..+.+ ..+..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G--------------------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~ 63 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAG--------------------YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 468999999999999999999887 38999999988776643211 00000
Q ss_pred ------EEecCCCHHHHHHhhccccEEEecCCccc
Q 001559 643 ------VQLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 643 ------~~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
..+..+ .++ +.++++|+||.|+|-..
T Consensus 64 ~~~~~~~~i~~~--~~~-~~~~~aD~Vieavpe~~ 95 (292)
T PRK07530 64 ARAAALARISTA--TDL-EDLADCDLVIEAATEDE 95 (292)
T ss_pred HHHHHHhCeEee--CCH-HHhcCCCEEEEcCcCCH
Confidence 000111 123 24689999999998653
No 457
>PRK08303 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.025 Score=64.26 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=56.3
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH----------HHHHHHHhc---C
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL----------KDAEEVIEG---I 637 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~----------~~a~~l~~~---~ 637 (1053)
.+.+.++|.| ++++|+++++.|++.| .+|.+++|+. ++++++.+. .
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G--------------------~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAG--------------------ATVYVTGRSTRARRSEYDRPETIEETAELVTAA 65 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEecccccccccccccchHHHHHHHHHhc
Confidence 3457899999 6899999999999987 3788889873 344443332 2
Q ss_pred C-CceEEEecCCCHHHHHHhhc-------cccEEEecC
Q 001559 638 P-NAEAVQLDVSDHKSLCKCIS-------QVEIVISLL 667 (1053)
Q Consensus 638 ~-~~~~~~~d~~d~~~l~~~i~-------~~DvVI~~~ 667 (1053)
+ ++.++++|++|.+++.++++ ..|++||++
T Consensus 66 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 66 GGRGIAVQVDHLVPEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 2 35678899999888776654 369999987
No 458
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.85 E-value=0.026 Score=64.42 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=54.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHH---HHhcC--CCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE---VIEGI--PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~---l~~~~--~~~~~~~~d~~ 648 (1053)
|+|+|+| +|++|+.+++.|++.| .+|.+++|....... ..... .++..+.+|++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 60 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG--------------------HDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC--------------------CeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCC
Confidence 5799999 6999999999999887 367777754221111 11112 23567789999
Q ss_pred CHHHHHHhhc--cccEEEecCCc
Q 001559 649 DHKSLCKCIS--QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~--~~DvVI~~~p~ 669 (1053)
|.+.+.++++ ++|+||++++.
T Consensus 61 d~~~~~~~~~~~~~d~vvh~a~~ 83 (338)
T PRK10675 61 NEALLTEILHDHAIDTVIHFAGL 83 (338)
T ss_pred CHHHHHHHHhcCCCCEEEECCcc
Confidence 9988888776 58999999854
No 459
>PRK12743 oxidoreductase; Provisional
Probab=95.85 E-value=0.031 Score=61.22 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=56.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.++. ++.++++++.+.+ .++..+.+|+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 61 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG--------------------FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDL 61 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccC
Confidence 46799999 6999999999999987 2676664 5666655554432 2467888999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.+++. ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 62 SDLPEGAQALDKLIQRLGRIDVLVNNAGA 90 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99887766554 47999999865
No 460
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=95.84 E-value=0.034 Score=66.46 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=50.3
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHh--cCCCceEEEec
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIE--GIPNAEAVQLD 646 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~--~~~~~~~~~~d 646 (1053)
..+.+||+|.| +|++|+.+++.|.+.| .+|.+++|... +.+.+.. ..++++.+..|
T Consensus 117 ~~~~mkILVTGatGFIGs~Lv~~Ll~~G--------------------~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~D 176 (436)
T PLN02166 117 GRKRLRIVVTGGAGFVGSHLVDKLIGRG--------------------DEVIVIDNFFTGRKENLVHLFGNPRFELIRHD 176 (436)
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHCC--------------------CEEEEEeCCCCccHhHhhhhccCCceEEEECc
Confidence 35568999999 7999999999999887 37888887522 1122211 12345666666
Q ss_pred CCCHHHHHHhhccccEEEecCC
Q 001559 647 VSDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p 668 (1053)
+.+ ..+.++|+||+++.
T Consensus 177 i~~-----~~~~~~D~ViHlAa 193 (436)
T PLN02166 177 VVE-----PILLEVDQIYHLAC 193 (436)
T ss_pred ccc-----ccccCCCEEEECce
Confidence 643 33568999999985
No 461
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=95.84 E-value=0.036 Score=59.79 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=56.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC----CCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
++++|.| +|++|+.+++.|++.| .+|.+.+|+.. .++++.... .++..+.+|++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 62 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG--------------------YRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVT 62 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCC
Confidence 5788998 7999999999999887 37888888743 333333322 23678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ ..|+||++++..
T Consensus 63 ~~~~v~~~~~~~~~~~~~id~vi~~ag~~ 91 (245)
T PRK12824 63 DTEECAEALAEIEEEEGPVDILVNNAGIT 91 (245)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 9888776654 379999998653
No 462
>PRK06701 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.034 Score=62.56 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=57.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC----CCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~----~~~~~~~~ 645 (1053)
.+.++++|.| +|++|+.+++.|++.| .+|.+++|+.+ ..+++.+.+ .++.++.+
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G--------------------~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEG--------------------ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEc
Confidence 3467899999 6999999999999987 37888888743 233332221 23667889
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+.+.++++ ..|+||++++.
T Consensus 104 Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 104 DVSDEAFCKDAVEETVRELGRLDILVNNAAF 134 (290)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 9999888877664 46999999865
No 463
>PRK06123 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.037 Score=60.01 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=55.3
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcC----CCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
+.++|.| +|++|+.+++.|++.| . .|.+.. |+.++.+.+.+.+ .++..+.+|++
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G-~-------------------~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~ 62 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERG-Y-------------------AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVA 62 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-C-------------------eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccC
Confidence 4688998 6999999999999987 2 555554 5555555443322 23567889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|+||++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06123 63 DEADVLRLFEAVDRELGRLDALVNNAGI 90 (248)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 9988887765 46999999865
No 464
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.81 E-value=0.033 Score=60.65 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=55.0
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhc----CCCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEG----IPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~----~~~~~~~~~d~~ 648 (1053)
+.|+|.| +|++|+.+++.|++.| .+|.+++|+. +..++..+. -.++.++.+|++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 62 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG--------------------FDLAINDRPDDEELAATQQELRALGVEVIFFPADVA 62 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCC
Confidence 5688888 7999999999999987 3678888753 333333222 124678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|+||++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 63 DLSAHEAMLDAAQAAWGRIDCLVNNAGV 90 (256)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 9888766554 46999999864
No 465
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=95.81 E-value=0.017 Score=63.48 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=57.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.+.++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+ ..++..+.+|++|.+
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G--------------------~~v~~~~~~~~~~~-----~~~~~~~~~D~~~~~ 62 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANG--------------------ANVVNADIHGGDGQ-----HENYQFVPTDVSSAE 62 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCccccc-----cCceEEEEccCCCHH
Confidence 457899999 7999999999999987 37888888765432 124677889999998
Q ss_pred HHHHhhc-------cccEEEecCCc
Q 001559 652 SLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++.++++ ..|+||++++.
T Consensus 63 ~~~~~~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 63 EVNHTVAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcc
Confidence 8877665 36999999864
No 466
>PRK06128 oxidoreductase; Provisional
Probab=95.79 E-value=0.038 Score=62.30 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=56.6
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH--HHHHHHHhc---C-CCceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIEG---I-PNAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~~---~-~~~~~~~ 644 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.+..++. .+++++.+. . .++.++.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G--------------------~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREG--------------------ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALP 112 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcC--------------------CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEe
Confidence 3467899999 6999999999999987 2677766543 233333322 2 2366788
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|++|.+++.++++ ..|+||++++.
T Consensus 113 ~Dl~~~~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 113 GDLKDEAFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 99999888776654 46999999875
No 467
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.78 E-value=0.033 Score=63.77 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=56.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~~d 646 (1053)
++.++|.| +|++|+++|+.|++.| .+|.+++|+.++++++.+.+ + ++..+.+|
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G--------------------~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~D 112 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKG--------------------LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVD 112 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--------------------CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 57899999 6999999999999987 37899999999888776543 2 35567788
Q ss_pred CCC--HHH---HHHhhcc--ccEEEecCCcc
Q 001559 647 VSD--HKS---LCKCISQ--VEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d--~~~---l~~~i~~--~DvVI~~~p~~ 670 (1053)
+++ .+. +.+.+.+ .|++||+++..
T Consensus 113 l~~~~~~~~~~l~~~~~~~didilVnnAG~~ 143 (320)
T PLN02780 113 FSGDIDEGVKRIKETIEGLDVGVLINNVGVS 143 (320)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEEecCcC
Confidence 874 232 3333443 55999998753
No 468
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.78 E-value=0.052 Score=62.10 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce----EEEecC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE----AVQLDV 647 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~----~~~~d~ 647 (1053)
++.+||.|||+|.+|..++..|+..+-+ .++.++|++.++++..+..+.++. -..+-.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~------------------~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~ 65 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIA------------------DELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA 65 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCC------------------CEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe
Confidence 4567999999999999999999887622 279999998887766654433211 011111
Q ss_pred CCHHHHHHhhccccEEEecCCc
Q 001559 648 SDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.+ . +.++++|+||.+.+.
T Consensus 66 ~~---~-~~~~~adivIitag~ 83 (315)
T PRK00066 66 GD---Y-SDCKDADLVVITAGA 83 (315)
T ss_pred CC---H-HHhCCCCEEEEecCC
Confidence 12 2 446899999999864
No 469
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.78 E-value=0.019 Score=66.22 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=62.7
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
+|+|+| +|++|+.+++.|.+++ + +...+.++.+.....+.+. +.+......|.. .
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~-h----------------p~~~l~~~as~~~~g~~~~--~~~~~~~~~~~~-----~ 56 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERN-F----------------PIDKLVLLASDRSAGRKVT--FKGKELEVNEAK-----I 56 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCC-C----------------ChhhEEEEeccccCCCeee--eCCeeEEEEeCC-----h
Confidence 589999 7999999999998854 2 1235555545433222222 222334444442 1
Q ss_pred HhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 655 KCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
+.++++|+|+.|+|......++...+++|+.+||.|
T Consensus 57 ~~~~~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~s 92 (339)
T TIGR01296 57 ESFEGIDIALFSAGGSVSKEFAPKAAKCGAIVIDNT 92 (339)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHHCCCEEEECC
Confidence 234789999999999988888888889999999998
No 470
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.77 E-value=0.053 Score=61.09 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=52.3
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce--EEEecCCCHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE--AVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~--~~~~d~~d~~~ 652 (1053)
++|+|||+|.+|..++..|++.| .+|++++|+.++.+.+.+.--.+. ..........+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 60 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG--------------------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADD 60 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--------------------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCC
Confidence 57999999999999999999887 379999998888777665311110 00000001122
Q ss_pred HHHhhccccEEEecCCccccHH
Q 001559 653 LCKCISQVEIVISLLPASCHVM 674 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~ 674 (1053)
..+. +.+|+||-+++......
T Consensus 61 ~~~~-~~~d~vila~k~~~~~~ 81 (304)
T PRK06522 61 PAEL-GPQDLVILAVKAYQLPA 81 (304)
T ss_pred hhHc-CCCCEEEEecccccHHH
Confidence 3333 78999999998754333
No 471
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=95.76 E-value=0.037 Score=61.56 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=57.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-----CHHHHHHHHhcCCCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-----YLKDAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-----~~~~a~~l~~~~~~~~~~~~d~~ 648 (1053)
|++||-| ||++|+..++++.+... +.+|++.|. +.+....+ ...|+..+++.|+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~------------------d~~v~~~DkLTYAgn~~~l~~~-~~~~~~~fv~~DI~ 61 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHP------------------DDHVVNLDKLTYAGNLENLADV-EDSPRYRFVQGDIC 61 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCC------------------CceEEEEecccccCCHHHHHhh-hcCCCceEEecccc
Confidence 5788997 99999999999987762 346777776 33333332 34467899999999
Q ss_pred CHHHHHHhhc--cccEEEecC
Q 001559 649 DHKSLCKCIS--QVEIVISLL 667 (1053)
Q Consensus 649 d~~~l~~~i~--~~DvVI~~~ 667 (1053)
|.+.+.++++ +.|+||+.+
T Consensus 62 D~~~v~~~~~~~~~D~VvhfA 82 (340)
T COG1088 62 DRELVDRLFKEYQPDAVVHFA 82 (340)
T ss_pred CHHHHHHHHHhcCCCeEEEec
Confidence 9999999998 589999976
No 472
>PRK12744 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.033 Score=61.00 Aligned_cols=77 Identities=26% Similarity=0.295 Sum_probs=55.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----CHHHHHHHHhcC----CCceEE
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----YLKDAEEVIEGI----PNAEAV 643 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----~~~~a~~l~~~~----~~~~~~ 643 (1053)
+.++++|.| +|++|+++++.|++.| + +|.++.+ +.+.++++.+.+ .++..+
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G-~-------------------~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 66 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQG-A-------------------KAVAIHYNSAASKADAEETVAAVKAAGAKAVAF 66 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-C-------------------cEEEEecCCccchHHHHHHHHHHHHhCCcEEEE
Confidence 457899999 7999999999999887 2 5444433 334444444332 246778
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|++|.+++.+++. ..|++|++++.
T Consensus 67 ~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 67 QADLTTAAAVEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred ecCcCCHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence 999999988876654 46999999864
No 473
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.71 E-value=0.015 Score=60.78 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=66.2
Q ss_pred CCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccc
Q 001559 201 SGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDK 280 (1053)
Q Consensus 201 ~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~ 280 (1053)
..+.-.++.|+|.|+.|+..++.++.+|.+ |...|-.... .. .... .++
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~-V~~~d~~~~~------------------------~~-~~~~---~~~-- 80 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGMR-VIGYDRSPKP------------------------EE-GADE---FGV-- 80 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-E-EEEEESSCHH------------------------HH-HHHH---TTE--
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCce-eEEecccCCh------------------------hh-hccc---ccc--
Confidence 367779999999999999999999999997 4433310000 00 0000 011
Q ss_pred cccccCccCcCcchhhhccCCCcEEEEcccccCCCCcccCHHHHHHhhcCCCCceEEEEEeecCCCce
Q 001559 281 ADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSL 348 (1053)
Q Consensus 281 ~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~i 348 (1053)
.+. .+ +++++.+|+|+++.--....-.+|+++.++.| | +++++|.++ .|+-|
T Consensus 81 --------~~~-~l-~ell~~aDiv~~~~plt~~T~~li~~~~l~~m-k---~ga~lvN~a--RG~~v 132 (178)
T PF02826_consen 81 --------EYV-SL-DELLAQADIVSLHLPLTPETRGLINAEFLAKM-K---PGAVLVNVA--RGELV 132 (178)
T ss_dssp --------EES-SH-HHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTS-T---TTEEEEESS--SGGGB
T ss_pred --------eee-eh-hhhcchhhhhhhhhccccccceeeeeeeeecc-c---cceEEEecc--chhhh
Confidence 011 12 55677899999999987778889999999996 5 789999866 45433
No 474
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.12 Score=55.70 Aligned_cols=119 Identities=20% Similarity=0.218 Sum_probs=84.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|++.+||.|++|..+++.|.+.+ .+|.+.|++++..+++...- ++ .++..+++.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g--------------------hdvV~yD~n~~av~~~~~~g--a~----~a~sl~el~ 54 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG--------------------HDVVGYDVNQTAVEELKDEG--AT----GAASLDELV 54 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC--------------------CeEEEEcCCHHHHHHHHhcC--Cc----cccCHHHHH
Confidence 46889999999999999999987 38999999998888877653 11 222345566
Q ss_pred HhhccccEEEecCCcc-ccHHHH---HHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 655 KCISQVEIVISLLPAS-CHVMVA---NACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~-~~~~v~---~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
+.+..-.+|--++|.+ ....++ ...+++|-.+||-. |..+.. ...++.+++|+.++. +|-.-|+.
T Consensus 55 ~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~-rr~~~l~~kgi~flD-~GTSGG~~ 125 (300)
T COG1023 55 AKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSL-RRAKLLAEKGIHFLD-VGTSGGVW 125 (300)
T ss_pred HhcCCCcEEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHH-HHHHHHHhcCCeEEe-ccCCCCch
Confidence 6666778898999987 333333 33578888999974 443333 344678899998886 66554543
No 475
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=95.70 E-value=0.049 Score=66.17 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=73.5
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH------HHHHHHhc-CCCceEEEe
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK------DAEEVIEG-IPNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~------~a~~l~~~-~~~~~~~~~ 645 (1053)
+..+|+|+|.|++|+.++..|+..| + .+++..+.|+... +..+++.. .+++.+..+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG-~----------------~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i 190 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSG-F----------------PRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEI 190 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcC-C----------------CcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEec
Confidence 5688999999999999999999998 3 2455555555433 22333444 456766667
Q ss_pred cCCCHHHHHHhhccccEEEecCCcccc---HHHHHHHHHhCCeEEEe
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCH---VMVANACIEFKKHLVTA 689 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~---~~v~~aci~~g~~~vD~ 689 (1053)
+.+..+++.+.++.+|+||.++.-+.. ..+..+|++.|+..+=+
T Consensus 191 ~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPa 237 (637)
T TIGR03693 191 DFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPA 237 (637)
T ss_pred cCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEE
Confidence 767778899999999999999975543 45778999999765543
No 476
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.68 E-value=0.023 Score=61.27 Aligned_cols=91 Identities=20% Similarity=0.163 Sum_probs=63.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc-EEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI-RVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...+|+|+|+|.+|+.+++++.... . +. -+.++|++++++.+.+. ++. +...+
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~-~-----------------g~~ivgv~D~d~~~~~~~i~---g~~-----v~~~~ 136 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEK-R-----------------GFKIVAAFDVDPEKIGTKIG---GIP-----VYHID 136 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhccc-C-----------------CcEEEEEEECChhhcCCEeC---CeE-----EcCHH
Confidence 4578999999999999998754211 1 12 46678888765532221 111 12346
Q ss_pred HHHHhhcc--ccEEEecCCccccHHHHHHHHHhCC-eEEEe
Q 001559 652 SLCKCISQ--VEIVISLLPASCHVMVANACIEFKK-HLVTA 689 (1053)
Q Consensus 652 ~l~~~i~~--~DvVI~~~p~~~~~~v~~aci~~g~-~~vD~ 689 (1053)
++.+++++ +|+||-|+|...+..+...|+++|+ +++..
T Consensus 137 ~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~ 177 (213)
T PRK05472 137 ELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNF 177 (213)
T ss_pred HHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeec
Confidence 67777764 9999999999988888999999996 44443
No 477
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.67 E-value=0.046 Score=61.75 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=34.2
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE 632 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~ 632 (1053)
.++|.|||+|.+|..+|..|+..| .+|.++|++.+++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G--------------------~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAG--------------------MDVWLLDSDPAALSR 42 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcC--------------------CeEEEEeCCHHHHHH
Confidence 467999999999999999999887 389999999887653
No 478
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=95.67 E-value=0.069 Score=60.40 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-----HHHhcCCCceEEEecCCCHHHHHHhhc
Q 001559 584 RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-----EVIEGIPNAEAVQLDVSDHKSLCKCIS 658 (1053)
Q Consensus 584 ~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-----~l~~~~~~~~~~~~d~~d~~~l~~~i~ 658 (1053)
+-|+++|+.|++.| ..|.|+||+.++++ .+.+. ++.. .++..++.+
T Consensus 30 ~gGspMArnLlkAG--------------------heV~V~Drnrsa~e~e~~e~Laea--GA~~-------AaS~aEAAa 80 (341)
T TIGR01724 30 YGGSRMAIEFAMAG--------------------HDVVLAEPNREFMSDDLWKKVEDA--GVKV-------VSDDKEAAK 80 (341)
T ss_pred CCHHHHHHHHHHCC--------------------CEEEEEeCChhhhhhhhhHHHHHC--CCee-------cCCHHHHHh
Confidence 56889999999887 38999999876543 23332 1221 124568888
Q ss_pred cccEEEecCCcccc-HHHHH---HHHHhCCeEEEeeccChhH
Q 001559 659 QVEIVISLLPASCH-VMVAN---ACIEFKKHLVTASYIDDSM 696 (1053)
Q Consensus 659 ~~DvVI~~~p~~~~-~~v~~---aci~~g~~~vD~sy~~~~~ 696 (1053)
++|+||.|+|..-+ ..+.. ..+..|+.++|+|.+++..
T Consensus 81 ~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t 122 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVV 122 (341)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHH
Confidence 99999999997654 23432 2346788899999877654
No 479
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.67 E-value=0.035 Score=62.64 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=50.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-------------Cce
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-------------NAE 641 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-------------~~~ 641 (1053)
++|.|||+|.+|..++..|+..| .+|.++|++.++.++..+.+. ...
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--------------------~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~ 63 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--------------------YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMS 63 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--------------------CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCC
Confidence 67999999999999999999887 389999999887764332110 000
Q ss_pred E-------EEecCCCHHHHHHhhccccEEEecCCccc
Q 001559 642 A-------VQLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 642 ~-------~~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
. ..+..+ .++ +.++++|+||.|+|...
T Consensus 64 ~~~~~~~~~~i~~~--~~~-~~~~~aDlVieav~e~~ 97 (291)
T PRK06035 64 EDEAKAIMARIRTS--TSY-ESLSDADFIVEAVPEKL 97 (291)
T ss_pred HHHHHHHHhCcEee--CCH-HHhCCCCEEEEcCcCcH
Confidence 0 000011 122 35688999999998765
No 480
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.66 E-value=0.034 Score=63.19 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|.|||.|.+|+.+|+.|...| .+|.+++|+... .++... .
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG--------------------~~V~~~~r~~~~--------~~~~~~------~ 164 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFG--------------------MNIYAYTRSYVN--------DGISSI------Y 164 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--------------------CEEEEECCCCcc--------cCcccc------c
Confidence 456799999999999999999887766 489999987421 011100 1
Q ss_pred HHHHHhhccccEEEecCCccccH-----HHHHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCHV-----MVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~-----~v~~aci~~g~~~vD~sy 691 (1053)
.++.++++++|+|+.++|..-.. .-..+.++.|..+|+++-
T Consensus 165 ~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sR 210 (303)
T PRK06436 165 MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVAR 210 (303)
T ss_pred CCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCC
Confidence 35788899999999999965321 112234566777777763
No 481
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.65 E-value=0.064 Score=59.91 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC-ceEEEecCCC
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-AEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-~~~~~~d~~d 649 (1053)
.....+|+|||.|.+|...|+...-.+ ..|+|.|++.+|.+.+-..+.. +... -++
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glg--------------------A~Vtild~n~~rl~~ldd~f~~rv~~~---~st 221 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLG--------------------ADVTILDLNIDRLRQLDDLFGGRVHTL---YST 221 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccC--------------------CeeEEEecCHHHHhhhhHhhCceeEEE---EcC
Confidence 456778999999999999999887666 3899999999999988776642 2322 347
Q ss_pred HHHHHHhhccccEEEecC--CccccHHH----HHHHHHhCCeEEEee
Q 001559 650 HKSLCKCISQVEIVISLL--PASCHVMV----ANACIEFKKHLVTAS 690 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~--p~~~~~~v----~~aci~~g~~~vD~s 690 (1053)
...+++.+.++|+||+++ |..-.+.+ ....++.|..+||++
T Consensus 222 ~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 222 PSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred HHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 788999999999999987 43333322 223455666666664
No 482
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=95.65 E-value=0.021 Score=65.78 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=54.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH--HHHHHh--cCCCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD--AEEVIE--GIPNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~--a~~l~~--~~~~~~~~~~d~~ 648 (1053)
+++|+|.| +|++|+.+++.|.+.| . ..+.+.++.... ...+.. ...+++++.+|++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g-~------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 61 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINET-S------------------DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDIC 61 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcC-C------------------CEEEEEecCccccchhhhhhcccCCceEEEECCCc
Confidence 46899999 7999999999999887 2 135555654221 111211 1124667889999
Q ss_pred CHHHHHHhhcc--ccEEEecCCc
Q 001559 649 DHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
|.+++.+++++ +|+||+++..
T Consensus 62 d~~~~~~~~~~~~~D~Vih~A~~ 84 (355)
T PRK10217 62 DRAELARVFTEHQPDCVMHLAAE 84 (355)
T ss_pred ChHHHHHHHhhcCCCEEEECCcc
Confidence 99999998885 8999999854
No 483
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.64 E-value=0.045 Score=64.14 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=60.0
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+..++|+||| +|.+|..++..|.+.| ..|.+++|+..
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G--------------------~~V~~~d~~~~---------------------- 133 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSG--------------------YQVRILEQDDW---------------------- 133 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCC--------------------CeEEEeCCCcc----------------------
Confidence 3468899999 9999999999999887 37999998520
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHH--HHhCCeEEEeeccC
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANAC--IEFKKHLVTASYID 693 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~ac--i~~g~~~vD~sy~~ 693 (1053)
+...+.++++|+||.|+|......+.... +..|+.++|++...
T Consensus 134 ~~~~~~~~~aDlVilavP~~~~~~~~~~l~~l~~~~iv~Dv~SvK 178 (374)
T PRK11199 134 DRAEDILADAGMVIVSVPIHLTEEVIARLPPLPEDCILVDLTSVK 178 (374)
T ss_pred hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhCCCCCcEEEECCCcc
Confidence 12346678999999999987654444332 45678889987654
No 484
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.62 E-value=0.057 Score=58.88 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----------CHHHHHHHHhcCCCc
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----------YLKDAEEVIEGIPNA 640 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----------~~~~a~~l~~~~~~~ 640 (1053)
+.+.++|+|.|.|.+|+.+++.|.+.+ . .-|.|+|. +.+++.+..+....+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g-~------------------~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l 88 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAG-A------------------KVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSV 88 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCC-C------------------EEEEEECCCCeEECCCCCCHHHHHHHHHhcCCc
Confidence 457899999999999999999999887 2 13448888 777766665543321
Q ss_pred eEEE-ecCCCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecC
Q 001559 641 EAVQ-LDVSDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEM 714 (1053)
Q Consensus 641 ~~~~-~d~~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~ 714 (1053)
.... ....+.+.+-.. +|||+|-|++... +...+. +-.+.+|--.-+.+-+.+-.+.-+++|+.++++.
T Consensus 89 ~~~~~~~~~~~~~i~~~--~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~ 159 (227)
T cd01076 89 LGFPGAERITNEELLEL--DCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEILHERGVLVVPDI 159 (227)
T ss_pred ccCCCceecCCccceee--cccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChH
Confidence 1100 000012222222 7999999996543 333222 2234455444443334455566789999998853
No 485
>PLN02494 adenosylhomocysteinase
Probab=95.62 E-value=0.034 Score=66.17 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|+|+|.+|+.+|..+...| .+|.++++++.++.+.... ++.+.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~G--------------------a~VIV~e~dp~r~~eA~~~--G~~vv------- 301 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAG--------------------ARVIVTEIDPICALQALME--GYQVL------- 301 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCchhhHHHHhc--CCeec-------
Confidence 456899999999999999999998776 3899999998765433222 12221
Q ss_pred HHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy 691 (1053)
.+.++++++|+||.+++..- -..-...+++.|..++.++.
T Consensus 302 -~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 302 -TLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred -cHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 24567788999999876431 11222334556666665553
No 486
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=95.61 E-value=0.032 Score=64.41 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=63.9
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-----CHHHHHHHHhcCCCceEE---Ee--
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-----YLKDAEEVIEGIPNAEAV---QL-- 645 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-----~~~~a~~l~~~~~~~~~~---~~-- 645 (1053)
+|.|||+|.+|.++|..|++.+... ..+| +.+|.++.| +.+-.+.+.+...+.+.. .+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~--------~~~~----~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~ 68 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARAL--------PELF----EESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPA 68 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcc--------cccC----CceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCC
Confidence 5899999999999999999865100 0000 147999998 444444444332222111 01
Q ss_pred cCCCHHHHHHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEee
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTAS 690 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~s 690 (1053)
++.-..++.++++++|+||-++|......+... .++.++.++.++
T Consensus 69 ~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 69 NLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred CeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 111124577889999999999998776555443 345566666665
No 487
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.61 E-value=0.0097 Score=62.48 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=45.3
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----------Cce----
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----------NAE---- 641 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----------~~~---- 641 (1053)
+|.|||+|.+|+.+|..++..| .+|.++|++.+.+++..+.+. ...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--------------------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~ 60 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--------------------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEA 60 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--------------------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--------------------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhh
Confidence 6899999999999999999987 489999999886654332211 000
Q ss_pred -----EEEecCCCHHHHHHhhccccEEEecCCccc
Q 001559 642 -----AVQLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 642 -----~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
-+.+ ..++.++. ++|+||.++|-.+
T Consensus 61 ~~~~~~i~~----~~dl~~~~-~adlViEai~E~l 90 (180)
T PF02737_consen 61 DAALARISF----TTDLEEAV-DADLVIEAIPEDL 90 (180)
T ss_dssp HHHHHTEEE----ESSGGGGC-TESEEEE-S-SSH
T ss_pred hhhhhhccc----ccCHHHHh-hhheehhhccccH
Confidence 0111 12344555 8999999998654
No 488
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.60 E-value=0.024 Score=65.38 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=60.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
++++|+|+| +|++|+.+++.|.+++.. ...+..+... +.+.+... +.+ ..+++.+.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP-----------------~~~l~~v~s~-~~aG~~l~-~~~---~~l~~~~~~ 60 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFP-----------------VGTLHLLASS-ESAGHSVP-FAG---KNLRVREVD 60 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCC-----------------ceEEEEEECc-ccCCCeec-cCC---cceEEeeCC
Confidence 457999999 699999999999954311 1243333222 22222111 222 112222222
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.. + ++++|+|+-++|......++..+.++|+.+||.|
T Consensus 61 ~~-~-~~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS 97 (336)
T PRK05671 61 SF-D-FSQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLS 97 (336)
T ss_pred hH-H-hcCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECc
Confidence 11 2 4789999999998877788888899999999998
No 489
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.59 E-value=0.1 Score=59.77 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=64.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|++|..+++++...+ .+|+.++|+.++.+.. .++..- ..++.+|.+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g--------------------a~Via~~~~~~K~e~a-~~lGAd--~~i~~~~~~ 221 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG--------------------AEVIAITRSEEKLELA-KKLGAD--HVINSSDSD 221 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--------------------CeEEEEeCChHHHHHH-HHhCCc--EEEEcCCch
Confidence 45789999999999999999988787 3899999998886543 444321 223444454
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
.+.++-+.+|++|+++| .........+++.|=.++-+..
T Consensus 222 ~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 222 ALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred hhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECC
Confidence 44444444999999999 5444444445555444444443
No 490
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.57 E-value=0.064 Score=64.48 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHH----HhcCC--CceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEV----IEGIP--NAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l----~~~~~--~~~~~~ 644 (1053)
..+|+|+|-| .|-+|+.+++.+++.+. .++.+++|++-+...+ .+.+| ....+.
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p-------------------~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~i 308 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNP-------------------KEIILFSRDEYKLYLIDMELREKFPELKLRFYI 308 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCC-------------------CEEEEecCchHHHHHHHHHHHhhCCCcceEEEe
Confidence 4578999999 58899999999998862 4899999997766443 34344 356778
Q ss_pred ecCCCHHHHHHhhcc--ccEEEecCCc
Q 001559 645 LDVSDHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
+|+.|.+.+.+++.+ +|+|++++-+
T Consensus 309 gdVrD~~~~~~~~~~~kvd~VfHAAA~ 335 (588)
T COG1086 309 GDVRDRDRVERAMEGHKVDIVFHAAAL 335 (588)
T ss_pred cccccHHHHHHHHhcCCCceEEEhhhh
Confidence 999999999999998 9999999853
No 491
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.56 E-value=0.0059 Score=61.54 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=52.4
Q ss_pred CeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC------ceEEEecC
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN------AEAVQLDV 647 (1053)
Q Consensus 575 ~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~------~~~~~~d~ 647 (1053)
+||.|||+ |.+|+.++..|...+-. .++.+.|++.++++..+..+.. .... +..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~------------------~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~-i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA------------------DEIVLIDINEDKAEGEALDLSHASAPLPSPVR-ITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS------------------SEEEEEESSHHHHHHHHHHHHHHHHGSTEEEE-EEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC------------------CceEEeccCcccceeeehhhhhhhhhcccccc-ccc
Confidence 58999998 99999999999988632 3799999998877766543321 1111 111
Q ss_pred CCHHHHHHhhccccEEEecCCcc
Q 001559 648 SDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
...+.++++|+||.+++..
T Consensus 62 ----~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 62 ----GDYEALKDADIVVITAGVP 80 (141)
T ss_dssp ----SSGGGGTTESEEEETTSTS
T ss_pred ----ccccccccccEEEEecccc
Confidence 2246678999999998654
No 492
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=95.54 E-value=0.033 Score=61.11 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=56.2
Q ss_pred eEEEEc-CchhhHHHHHHHHh----CCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEE
Q 001559 576 SVLIIG-AGRVCRPAAELLAS----FGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQ 644 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~----~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~ 644 (1053)
.++|.| +|++|+.+++.|++ .| ..|.+++|+.++++++.+.+ + ++..+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~ 61 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG--------------------SVLVLSARNDEALRQLKAEIGAERSGLRVVRVS 61 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC--------------------cEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEE
Confidence 378888 69999999999987 44 47899999998887776543 2 356788
Q ss_pred ecCCCHHHHHHhhccc-----------cEEEecCCc
Q 001559 645 LDVSDHKSLCKCISQV-----------EIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~-----------DvVI~~~p~ 669 (1053)
+|++|.+++.++++.. |+||++++.
T Consensus 62 ~Dl~~~~~v~~~~~~~~~~~g~~~~~~~~lv~nAG~ 97 (256)
T TIGR01500 62 LDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGT 97 (256)
T ss_pred eccCCHHHHHHHHHHHHhccccCCCceEEEEeCCcc
Confidence 9999988776655421 588888864
No 493
>PRK12747 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.055 Score=59.03 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=53.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.+.++|.| +|++|+++++.|++.| .+|.+.. ++.++++++...+ ..+..+.+|+
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDG--------------------ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANL 63 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--------------------CeEEEEcCCCHHHHHHHHHHHHhcCCceEEEeccc
Confidence 57899999 7999999999999987 2677654 5656655544332 2355678899
Q ss_pred CCHHHHHHhhc-------------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------------~~DvVI~~~p~ 669 (1053)
++.++...+++ ..|++|++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~ 98 (252)
T PRK12747 64 ESLHGVEALYSSLDNELQNRTGSTKFDILINNAGI 98 (252)
T ss_pred CCHHHHHHHHHHHHHHhhhhcCCCCCCEEEECCCc
Confidence 87765443221 58999999864
No 494
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.52 E-value=0.057 Score=59.39 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g 597 (1053)
+..+|+|+|+|++|..+++.|++.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 5689999999999999999999874
No 495
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.019 Score=66.76 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=70.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHH---
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDA--- 630 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a--- 630 (1053)
+..||||+|||++|..+.+.|+..| ++ +|.|+|.+ ..+|
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~g-f~------------------~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA 71 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTG-FE------------------EIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVA 71 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhc-CC------------------eeEEEeccceeccchhhhheeehhhcCchHHHHH
Confidence 4678999999999999999999887 42 55555543 1122
Q ss_pred H-HHHhcCCCc--eEEEecCCCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 631 E-EVIEGIPNA--EAVQLDVSDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 631 ~-~l~~~~~~~--~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
. .+....|++ ...+.++.+.+--.+..+++|+|.||+..-- ...|.+.|+.+.+++||..
T Consensus 72 ~~~v~~Fnpn~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesG 135 (603)
T KOG2013|consen 72 AKAVKQFNPNIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESG 135 (603)
T ss_pred HHHHHHhCCCCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecC
Confidence 2 222334554 4556677777555688889999999997543 3567888999999999863
No 496
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.50 E-value=0.05 Score=59.15 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=56.8
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-----CCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~~ 645 (1053)
.+.++|+|.| +|++|..+++.|++.| .+|.+.+|+.++++++.+.+ .++.++.+
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~ 69 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHG--------------------ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPL 69 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEe
Confidence 4578899998 7999999999999887 37889999988776665433 23556677
Q ss_pred cCC--CHHHHHHhh-------ccccEEEecCCc
Q 001559 646 DVS--DHKSLCKCI-------SQVEIVISLLPA 669 (1053)
Q Consensus 646 d~~--d~~~l~~~i-------~~~DvVI~~~p~ 669 (1053)
|++ +.+++.+++ ...|+||+++..
T Consensus 70 d~~~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 70 DLLTATPQNYQQLADTIEEQFGRLDGVLHNAGL 102 (247)
T ss_pred cccCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 775 444443332 357999998854
No 497
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.50 E-value=0.036 Score=63.59 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|||+|-+|+.++++|.+.| + .+|+|++|+.+. ..+... .
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g-~------------------~~i~v~nRt~~~-----~~~~~~---------~ 217 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQG-Y------------------SRITFCSRQQLT-----LPYRTV---------V 217 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcC-C------------------CEEEEEcCCccc-----cchhhh---------h
Confidence 356789999999999999999999987 2 379999999742 111100 0
Q ss_pred HHHHHhhccccEEEecCC--ccccHHHHHHHHHh--CCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLP--ASCHVMVANACIEF--KKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p--~~~~~~v~~aci~~--g~~~vD~sy 691 (1053)
....+...++|+||+|+. ...++.+...-++. ...++|++-
T Consensus 218 ~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAv 262 (338)
T PRK00676 218 REELSFQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNV 262 (338)
T ss_pred hhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecC
Confidence 011244568999998742 12222222222221 146889874
No 498
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.48 E-value=0.11 Score=59.68 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=48.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE-----EEecC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA-----VQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~-----~~~d~ 647 (1053)
+.+||.|||+|.+|..++..|+..+ . ..+.+.|++.++++..+..+..... ..+-.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~-~------------------~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~ 64 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKN-L------------------GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG 64 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCC-C------------------CeEEEEECCCccchhHHHHHhhhccccCCCeEEEe
Confidence 4679999999999999999988776 2 2689999987655432221111100 11111
Q ss_pred CCHHHHHHhhccccEEEecCCc
Q 001559 648 SDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
..+++ .++++|+||.+...
T Consensus 65 --~~d~~-~l~~ADiVVitag~ 83 (319)
T PTZ00117 65 --TNNYE-DIKDSDVVVITAGV 83 (319)
T ss_pred --CCCHH-HhCCCCEEEECCCC
Confidence 12344 66899999999943
No 499
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.46 E-value=0.043 Score=63.65 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHh-cCCC---------ceE
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE-GIPN---------AEA 642 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~-~~~~---------~~~ 642 (1053)
+++|+|+| +|++|+.+++.|.+++. .++..+.++...+.+... .++. ...
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~-------------------~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~ 63 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW-------------------FEVTALAASERSAGKTYGEAVRWQLDGPIPEEVAD 63 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC-------------------ceEEEEEcChhhcCCcccccccccccccccccccc
Confidence 47899999 79999999999998763 366666555544332221 1110 011
Q ss_pred EEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
..+...+.+. +.++|+|+.|+|......++.++.+.|+.+||.+
T Consensus 64 ~~v~~~~~~~----~~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 64 MEVVSTDPEA----VDDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eEEEeCCHHH----hcCCCEEEEeCChhHHHHHHHHHHHCCCEEEECC
Confidence 1222223332 3689999999999887778888889999999997
No 500
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.44 E-value=0.057 Score=60.96 Aligned_cols=79 Identities=16% Similarity=0.049 Sum_probs=52.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEE------ecCC
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQ------LDVS 648 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~------~d~~ 648 (1053)
|+|+|+|+|.+|..++..|++.| .+|++++| .++.+++.+. +..... ....
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g--------------------~~V~~~~r-~~~~~~~~~~--g~~~~~~~~~~~~~~~ 57 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG--------------------RDVTFLVR-PKRAKALRER--GLVIRSDHGDAVVPGP 57 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--------------------CceEEEec-HHHHHHHHhC--CeEEEeCCCeEEecce
Confidence 57999999999999999999887 27899999 7777766542 111110 0100
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHH
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVA 676 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~ 676 (1053)
-..+..+....+|+||-|++......+.
T Consensus 58 ~~~~~~~~~~~~d~vilavk~~~~~~~~ 85 (305)
T PRK12921 58 VITDPEELTGPFDLVILAVKAYQLDAAI 85 (305)
T ss_pred eecCHHHccCCCCEEEEEecccCHHHHH
Confidence 0122334557899999999876544433
Done!