Query 001559
Match_columns 1053
No_of_seqs 474 out of 3688
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 15:50:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001559.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_859-862//hhsearch_pdb/001559hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axq_A Saccharopine dehydrogen 1.0 1 1 614.5 46.5 444 571-1052 20-465 (467)
2 1ff9_A Saccharopine reductase; 1.0 1 1 590.7 46.3 444 574-1052 3-448 (450)
3 2qrj_A Saccharopine dehydrogen 1.0 1 1 572.9 30.8 351 4-434 22-384 (394)
4 4dio_A NAD(P) transhydrogenase 1.0 1 1 508.3 20.0 349 6-439 25-396 (405)
5 3p2y_A Alanine dehydrogenase/p 1.0 1 1 503.3 22.1 346 5-434 21-379 (381)
6 2z2v_A Hypothetical protein PH 1.0 1 1 468.8 33.8 348 571-1051 13-365 (365)
7 3abi_A Putative uncharacterize 1.0 1 1 457.8 35.5 349 571-1051 13-365 (365)
8 4ina_A Saccharopine dehydrogen 1.0 1 1 406.0 32.5 374 574-1052 1-394 (405)
9 1x13_A NAD(P) transhydrogenase 1.0 1 1 387.1 20.1 358 6-443 7-381 (401)
10 1l7d_A Nicotinamide nucleotide 1.0 1 1 385.5 24.1 351 7-439 1-378 (384)
No 1
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=614.51 Aligned_cols=444 Identities=36% Similarity=0.629 Sum_probs=397.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..++++|+|+|+|++|++++..|++.+. .+|.+++|+.++++++++. .++..+.+|+.|.
T Consensus 20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g-------------------~~V~v~~R~~~ka~~la~~-~~~~~~~~D~~d~ 79 (467)
T 2axq_A 20 RHMGKNVLLLGSGFVAQPVIDTLAANDD-------------------INVTVACRTLANAQALAKP-SGSKAISLDVTDD 79 (467)
T ss_dssp ---CEEEEEECCSTTHHHHHHHHHTSTT-------------------EEEEEEESSHHHHHHHHGG-GTCEEEECCTTCH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCC-------------------CEEEEEECCHHHHHHHHHH-CCCCEEEEECCCH
T ss_conf 7789999999885999999999984899-------------------7699997999999999874-4981899715898
Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 78997501660999448852117999998870790999513675699999999975986980688982478999999999
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMIN 730 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~~mla~~~~~ 730 (1053)
+.+.++++++|+||||+|.+++..+..+|++.|++|+|++|..+.+..+.+.|+++|+++++++|++||+++++++++++
T Consensus 80 ~~l~~~l~~~DvVIn~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv~~i~g~G~~PG~~~~~a~~li~ 159 (467)
T 2axq_A 80 SALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTID 159 (467)
T ss_dssp HHHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 99999974897999888524337999999864987999525877899999999986997875688676506999999999
Q ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCEEEEECCCCCCE
Q ss_conf 86001484379985106988877778944654446988899840398258889989995398765664288721798650
Q 001559 731 HAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFA 810 (1053)
Q Consensus 731 ~~~~~~~~v~sf~~~~Gg~p~p~~~~~pl~y~~swsp~~~l~~~~~p~~~~~~G~~~~v~~~~~~~~~~~~~~p~~~~~~ 810 (1053)
+++..++++.+|.+|+|+.|.++.+++|++|+|+|||++++.++.+|+.+|+||+++.+++.+......++++ ++++.
T Consensus 160 q~~~~g~~~~s~~~wtG~~p~~~~~~~~l~y~fsws~~g~i~~~~~~a~~~~~G~~~~v~~~~~~~~~~~~~~--~~g~~ 237 (467)
T 2axq_A 160 EVHRAGGKLKSFLSYCGGLPAPEDSDNPLGYKFSWSSRGVLLALRNSAKYWKDGKIETVSSEDLMATAKPYFI--YPGYA 237 (467)
T ss_dssp HHHHTTCEEEEEEEEEEEEECGGGCCSTTSCCBSSCCHHHHHGGGSCEEEEETTEEEEECTTTHHHHCEECCS--STTCC
T ss_pred HHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCEEEEECCHHHHCCCCCCCC--CCCCC
T ss_conf 9875157601799882424772225641137677787899997268729999999999567554111010023--79851
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 21046888653101038576766000011122567899999887087778885333589998899999999301665679
Q 001559 811 LECLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMG 890 (1053)
Q Consensus 811 ~e~~~n~dsl~~~~~ygi~~~~~tl~r~TlRy~G~~~~~~~L~~lGLl~~~~~~~~~~g~~~s~~~~~~~~l~~~~~~~~ 890 (1053)
+|+|||+||+.|.+.|++ ++++++.|+||||+||++.|++|++|||++++|+++. ++.++|+++++++|+. |
T Consensus 238 ~e~~~~~~~~~~~e~y~i-~~~~~~~r~tlR~~g~~~~~~~L~~lGl~~~~~~~~~--~~~i~~~~~~~~~l~~-~---- 309 (467)
T 2axq_A 238 FVCYPNRDSTLFKDLYHI-PEAETVIRGTLRYQGFPEFVKALVDMGMLKDDANEIF--SKPIAWNEALKQYLGA-K---- 309 (467)
T ss_dssp EEEEECSBCTHHHHHTTC-TTCSEEEEEEEEETTHHHHHHHHHHTTTTCCSBCGGG--SSCCBHHHHHHHHHTC-S----
T ss_pred EEEECCCCCCHHHHHHCC-CCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCC--CCCCCHHHHHHHHCCC-C----
T ss_conf 798248886144555078-8764157899981889999999997699978863346--8886899999986389-7----
Q ss_pred CCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 9999867899999830-765024559999998786425557534789899257858997876048999986599999999
Q 001559 891 EAPLGEKEITERILSL-GHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVE 969 (1053)
Q Consensus 891 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~d~~~~~L~~~l~~~p~e~D~v~l~~~v~ 969 (1053)
+.+++++..++... ++.. .+++.+|+++++|+|+|++++++ ++++|+|+||++|+++|+|.++|+||++|+|+|+
T Consensus 310 --~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~G~~~~~~~~-~~~~~~d~l~~~l~~~l~~~~~e~D~v~l~~~~~ 385 (467)
T 2axq_A 310 --STSKEDLIASIDSKATWKD-DEDRERILSGFAWLGLFSDAKIT-PRGNALDTLCARLEELMQYEDNERDMVVLQHKFG 385 (467)
T ss_dssp --SSSHHHHHHHHHTTCCCSC-HHHHHHHHHHHHHTTTTSSCBCC-CCSBHHHHHHHHHHHHSBCCTTCCEEEEEEEEEE
T ss_pred --CCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf --6647889999986604775-26789999788750778777667-7899899999999986255889884599999999
Q ss_pred EECCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHC-CCEE
Q ss_conf 996998033269999999210268876662110235899999999873830898355455888617999999867-9989
Q 001559 970 VEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQAY-GIKL 1048 (1053)
Q Consensus 970 g~~~~g~~~~~~~~tl~~~g~~~~~~g~samarttG~p~aiaA~lil~g~i~~~GV~~P~~~~~y~p~l~~L~~~-GI~~ 1048 (1053)
+.++||++ ++++++++.|+++ .|+||||||||+|+||+|+|||+|+|+++||++|.+.++|+|||++|+++ ||.|
T Consensus 386 ~~~~~g~~-~~~~~~~~~y~~~---~g~sama~tvG~p~ai~a~~i~~g~i~~~Gv~~P~~~e~~~p~l~~L~~~~Gi~~ 461 (467)
T 2axq_A 386 IEWADGTT-ETRTSTLVDYGKV---GGYSSMAATVGYPVAIATKFVLDGTIKGPGLLAPYSPEINDPIMKELKDKYGIYL 461 (467)
T ss_dssp EECTTSCE-EEEEEEEEEECCT---TSCCHHHHHHHHHHHHHHHHHHTTSSCCSEEECSCSHHHHHHHHHHHHHHHCCCC
T ss_pred EEECCCCE-EEEEEEEEEECCC---CCCEEEEHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 89639968-9999999996688---8863775141326999999996796478812188767788999999988329863
Q ss_pred EEEC
Q ss_conf 9981
Q 001559 1049 VEKS 1052 (1053)
Q Consensus 1049 ~e~~ 1052 (1053)
+|++
T Consensus 462 ~~~~ 465 (467)
T 2axq_A 462 KEKT 465 (467)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9996
No 2
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A
Probab=1.00 E-value=1 Score=590.73 Aligned_cols=444 Identities=39% Similarity=0.652 Sum_probs=398.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|+|+|+|++|+.++..|++.+ . +|.+++|+.++++++++.++++..+.+|++|.+.+
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G-~-------------------~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l 62 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSG-I-------------------KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAAL 62 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTT-C-------------------EEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHHHHHHHHCCCCEEEEEECCCHHHH
T ss_conf 999999878799999999998591-9-------------------89999899899999998657863999504898999
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 97501660999448852117999998870790999513675699999999975986980688982478999999999860
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAH 733 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~~mla~~~~~~~~ 733 (1053)
.++++++|+|||++|..++..+..+|+++|+|++|.++..+.+..+.+.|+++|+.+++++|++||++++++++++++..
T Consensus 63 ~~~l~~~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~i~g~g~~pg~~~~~a~~li~q~~ 142 (450)
T 1ff9_A 63 DAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVH 142 (450)
T ss_dssp HHHHTTSSEEEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEEECSCBBTTBHHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 99874984999888521255899999867995999503668999999999987986986778767459999999999744
Q ss_pred HCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCEEEEECCCCCCEEEC
Q ss_conf 01484379985106988877778944654446988899840398258889989995398765664288721798650210
Q 001559 734 VRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALEC 813 (1053)
Q Consensus 734 ~~~~~v~sf~~~~Gg~p~p~~~~~pl~y~~swsp~~~l~~~~~p~~~~~~G~~~~v~~~~~~~~~~~~~~p~~~~~~~e~ 813 (1053)
..++++.+|.+|+|+.|.++.+.+|++|+|+||+.+++.++.+++.+++||+++.|++.+++...++++| ++++.+|+
T Consensus 143 ~~gg~i~~~~~~~G~~p~~~~~~~~l~~~~~~s~~g~l~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~--~~g~~~e~ 220 (450)
T 1ff9_A 143 AAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFI--YPGFAFVA 220 (450)
T ss_dssp HTTCEEEEEEEEEEEEECGGGCCSTTSCCCSSCHHHHHHHTTSCEEEEETTEEEEECTHHHHHTCEECCS--STTCCEEE
T ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCEECCCHHHHHHHHHCHHHEEECCEEEEEECCCHHCCCEEEEC--CCCCEEEE
T ss_conf 0478066999997346864467763112315676899998608100574891799857201025235203--79825899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 46888653101038576766000011122567899999887087778885333589998899999999301665679999
Q 001559 814 LPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAP 893 (1053)
Q Consensus 814 ~~n~dsl~~~~~ygi~~~~~tl~r~TlRy~G~~~~~~~L~~lGLl~~~~~~~~~~g~~~s~~~~~~~~l~~~~~~~~~~~ 893 (1053)
|||+||+.|.+.|++ ++++++.|+|+||+||+++|++|++|||++++|+++. ++.++|+++++++|+. | +
T Consensus 221 ~~~~~s~~~~~~~~~-~~~~~l~r~tlR~~g~~~~~~~l~~lGl~~~~~~~~~--~~~~~~~~~~~~~l~~-~------~ 290 (450)
T 1ff9_A 221 YPNRDSTPYKERYQI-PEADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFL--KEAIPWKEATQKIVKA-S------S 290 (450)
T ss_dssp EECSBCTTHHHHTTC-TTCSEEEEEEEEETTHHHHHHHHHHTTTTCCCBCGGG--SSCCBHHHHHHHHHTC-S------S
T ss_pred ECCCCCCHHHHHCCC-CCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCC--CCCCCHHHHHHHHHCC-C------C
T ss_conf 316776412766089-9754488853753579999999997699988864234--6887799999997188-7------7
Q ss_pred CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEC
Q ss_conf 9867899999830-765024559999998786425557534789899257858997876048999986599999999996
Q 001559 894 LGEKEITERILSL-GHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEF 972 (1053)
Q Consensus 894 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~d~~~~~L~~~l~~~p~e~D~v~l~~~v~g~~ 972 (1053)
.+++++..++.+. .+. ..+++.++++++.|+|+|++++++ .+++|+|.||++|+++|+|.|+|+||++|+|+|++.+
T Consensus 291 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~p~~~l~~~l~~~~~~~~~e~d~v~l~~~~~~~~ 368 (450)
T 1ff9_A 291 ASEQDIVSTIVSNATFE-STEEQKRIVAGLKWLGIFSDKKIT-PRGNALDTLCATLEEKMQFEEGERDLVMLQHKFEIEN 368 (450)
T ss_dssp SSHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHTTTSSCBCC-CCSBHHHHHHHHHHHHSSCCTTCCEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEE
T ss_conf 86799999999760577-567799999788860667766666-7899899999986675254788885599999999994
Q ss_pred CCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHC-CCEEEEE
Q ss_conf 998033269999999210268876662110235899999999873830898355455888617999999867-9989998
Q 001559 973 PDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQAY-GIKLVEK 1051 (1053)
Q Consensus 973 ~~g~~~~~~~~tl~~~g~~~~~~g~samarttG~p~aiaA~lil~g~i~~~GV~~P~~~~~y~p~l~~L~~~-GI~~~e~ 1051 (1053)
+||++ +++++++++|+++..+.|+||||||||+|+||+|+||++|+|+.+||++|++.++|+|||++|+++ ||.|+|+
T Consensus 369 ~~g~~-~~~~~~~~~~~~~~~~~g~~ama~t~G~p~ai~a~~i~~g~~~~~Gv~~p~~~e~~~p~l~~L~~~~Gi~~~~~ 447 (450)
T 1ff9_A 369 KDGSR-ETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEK 447 (450)
T ss_dssp TTSCE-EEEEEEEEEECCCTTSSSCCHHHHHHHHHHHHHHHHHHHTSSCCCEEECSCSHHHHHHHHHHHHHHHCCCCEEE
T ss_pred CCCCE-EEEEEEEEEECCCCCCCCCCCEEHHHCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 69977-99999999965646778751040753648999999996797577800078967777999999987469724999
Q ss_pred C
Q ss_conf 1
Q 001559 1052 S 1052 (1053)
Q Consensus 1052 ~ 1052 (1053)
+
T Consensus 448 ~ 448 (450)
T 1ff9_A 448 V 448 (450)
T ss_dssp E
T ss_pred E
T ss_conf 6
No 3
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=1.00 E-value=1 Score=572.87 Aligned_cols=351 Identities=21% Similarity=0.271 Sum_probs=292.9
Q ss_pred CCCEEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCEECCCCC--C--CCE-E
Q ss_conf 8860999960049999731005957899998639999640599981899998998467638949835887--6--777-9
Q 001559 4 LGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLS--E--CGL-V 78 (1053)
Q Consensus 4 ~~~~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~~~~~F~D~~Y~~aGA~I~~~~~--~--adi-I 78 (1053)
|..|+|||+||++ +||+||||||++|++|+++| ++|+||+|++++|+|++|++|||+|+++.. + ||+ |
T Consensus 22 m~~m~IGvpkE~k-~~E~RValtP~~V~~L~~~G------~~V~VE~gA~a~f~D~~Y~~AGA~I~~~~~~~~a~aDi~I 94 (394)
T 2qrj_A 22 MAAVTLHLRAETK-PLEARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPRDRII 94 (394)
T ss_dssp --CCEEEECCCCS-TTCCCCSSCHHHHHHHHHTT------CEEEEECCSSCSSCHHHHHHTTCEEECTTGGGGSCTTSEE
T ss_pred CCCEEEEEECCCC-CCCCEECCCHHHHHHHHHCC------CEEEEECCCCCCCCHHHHHHCCCEEECHHHHHCCCCCEEE
T ss_conf 7650899984799-99836165999999999689------9899917998899979998689199651564047887189
Q ss_pred EEECCCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 95159992-35579974999735533347999999999975992998024338788653417789999999999998527
Q 001559 79 LGIKQPKL-EMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQ 157 (1053)
Q Consensus 79 l~VKep~~-~~l~~~~t~i~fsh~~k~q~~n~~ll~~ll~k~itlid~E~i~~~~~~rl~~fg~~AG~ag~~~~l~~lg~ 157 (1053)
+|||||++ +++.+++++++|+|++++|++|++++++++++++|+|+||.|++++++||++||++|||+|++++++.|++
T Consensus 95 lkVkeP~~~~e~~~~~~~i~f~~~~~~q~~~~~l~~~l~~~~it~ia~E~v~~~~g~rL~sf~~iAG~~av~~a~~~lg~ 174 (394)
T 2qrj_A 95 IGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLEFLENDQGRRVAAFGFYAGFAGAALGVRDWAF 174 (394)
T ss_dssp ECSSCCCTTCCSCCCSEEEECCCCSSCCTTHHHHHHHHHHHTCEEEEGGGCBCTTSCBSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHCCCCCEEEEECHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 98789994776156995899942442465589999999987996998042586789887401667589999999999888
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCEEEEEECC-CHHHHHHHHHHHHCCCC--EECC
Q ss_conf 54304898875445510001219999999974032223159998878849999855-21289899999629992--5247
Q 001559 158 RYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGS-GNVSLGAQEIFKLLPHT--FVEP 234 (1053)
Q Consensus 158 ~~l~~g~~tpf~~~~~~~~~~~~~~~~~a~~~~g~~i~~~g~p~~i~p~~v~i~G~-G~vg~gA~~~~~~Lga~--~V~~ 234 (1053)
+++..|.. +|..+.+ |.+..+|.+++.. .+..++.+ +.+|.+++|+|+ |+||+||+++|++||+. .|+.
T Consensus 175 ~~~g~~g~-~l~~~~p---m~s~~al~q~~~~---~l~~~~~~-g~~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v 246 (394)
T 2qrj_A 175 KQTHSDDE-DLPAVSP---YPNEKALVKDVTK---DYKEALAT-GARKPTVLIIGALGRCGSGAIDLLHKVGIPDANILK 246 (394)
T ss_dssp HHHSCTTC-CCCCCCC---CSSHHHHHHHHHH---HHHHHHTT-TCCCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHCCCCCC-CCCCCCC---CCCHHHHHHHHHH---HHHHHHCC-CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 63687666-6777667---6589999999999---87543115-898876999957887999999999868999672378
Q ss_pred CCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCC
Q ss_conf 99134320013457998654107874452211100024999875510122395676720242105979499972013689
Q 001559 235 SRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQR 314 (1053)
Q Consensus 235 ~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~ 314 (1053)
+|++... .| +.| +.+. ++||+|||++|+++
T Consensus 247 ~D~~~~~-------------------------------~g-~~~-----------------~~i~-~aDivIn~vlig~~ 276 (394)
T 2qrj_A 247 WDIKETS-------------------------------RG-GPF-----------------DEIP-QADIFINCIYLSKP 276 (394)
T ss_dssp ECHHHHT-------------------------------TC-SCC-----------------THHH-HSSEEEECCCCCSS
T ss_pred EECCCCC-------------------------------CC-CCH-----------------HHHH-HCCEEEECCCCCCC
T ss_conf 6345324-------------------------------69-726-----------------5575-18989979375888
Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEE---CCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 9964399989985518999439999841389963210---1465556872772799887678878998399932881058
Q 001559 315 FPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFV---NRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTE 391 (1053)
Q Consensus 315 ~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE~t---~~~tt~~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~ 391 (1053)
+|+|||++|+++|.| |||||||||||+|||||++ .++||+++|+|.++..+ +++|+||||||||++
T Consensus 277 aP~Lvt~e~v~~m~k---~gsVIVDVA~D~GG~~et~~f~~~~Tt~~~P~~~~~g~~--------~~~V~~~~v~nlP~~ 345 (394)
T 2qrj_A 277 IAPFTNMEKLNNPNR---RLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTA--------GPKLSVISIDHLPSL 345 (394)
T ss_dssp CCCSCCHHHHCCTTC---CCCEEEETTCCTTCTTCSSCSCCCCCBTTBCCEEECCSS--------SSCEEEECCTTGGGG
T ss_pred CCCCCCHHHHHCCCC---CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCC--------CCCEEEEEECCHHHH
T ss_conf 983628999846767---973999983479997676544555774578779978987--------887899996980466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCE
Q ss_conf 8999999999999999998206998776788877245342985
Q 001559 392 FAKEASQHFGDILLEFIGSLSSTVDFTELPSHLRRACIAHGGA 434 (1053)
Q Consensus 392 lp~~AS~~fs~~l~~~l~~l~~~~~~~~~~~~l~~a~i~~~G~ 434 (1053)
||++||++||++++|||..|.+. +.+.++++|++..+-+
T Consensus 346 lPrtAS~~~sn~llp~l~~l~~~----~~~~v~~~A~~~~~~~ 384 (394)
T 2qrj_A 346 LPREASEFFSHDLLPSLELLPQR----KTAPVWVRAKKLFDRH 384 (394)
T ss_dssp SHHHHHHHHHHHHHHHHHTCTTT----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHH
T ss_conf 09999999999899999998645----8547889989876567
No 4
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=1.00 E-value=1 Score=508.27 Aligned_cols=349 Identities=16% Similarity=0.220 Sum_probs=281.5
Q ss_pred CEEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHCCCEECCC--CCCCCEEEEE
Q ss_conf 60999960049999731005957899998639999640599981899--9989984676389498358--8767779951
Q 001559 6 NGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISED--LSECGLVLGI 81 (1053)
Q Consensus 6 ~~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~~--~~~F~D~~Y~~aGA~I~~~--~~~adiIl~V 81 (1053)
.|+|||+||++ +||+||||||++|++|++.| ++|+||+|+ .++|+|++|++|||+|... +++||+|++|
T Consensus 25 ~m~IGvpkE~~-~~E~RValtP~~v~~L~~~G------~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkV 97 (405)
T 4dio_A 25 SEIVFIAKESD-PNEGRVAGSVESVKKLKSLG------FDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKV 97 (405)
T ss_dssp -CEEEECCCCC-TTCCCCSCCHHHHHHHHHTT------CEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEE
T ss_pred CEEEEEECCCC-CCCCEECCCHHHHHHHHHCC------CEEEEECCCCCCCCCCHHHHHHCCCEECHHHHHCCCCEEEEE
T ss_conf 64999964799-99845168999999999689------999996799856887989999858899567852139999985
Q ss_pred CCCCCCCC---CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC---CCCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 59992355---799749997355333479999999999759929980243387---8865-3417789999999999998
Q 001559 82 KQPKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD---NGRR-LLAFGKFAGRAGMIDFLHG 154 (1053)
Q Consensus 82 Kep~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~ll~k~itlid~E~i~~~---~~~r-l~~fg~~AG~ag~~~~l~~ 154 (1053)
|||+++|+ .+++++++|.|+. .|++++++++++++|+|+||.|+|+ |.+. |++|+++|||++++.+++.
T Consensus 98 k~p~~~e~~~l~~g~~l~~~lh~~----~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~Av~~aa~~ 173 (405)
T 4dio_A 98 RRPSAQEISGYRSGAVVIAIMDPY----GNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQAVIDAAYE 173 (405)
T ss_dssp ECCCTTTGGGSCTTCEEEEECCCT----TCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCEEEEEECCC----CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH
T ss_conf 889956786128996999981605----5999999999779949985343435656754010345589999999999998
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEECC
Q ss_conf 52754304898875445510001219999999974032223159998878849999855212898999996299925247
Q 001559 155 LGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEP 234 (1053)
Q Consensus 155 lg~~~l~~g~~tpf~~~~~~~~~~~~~~~~~a~~~~g~~i~~~g~p~~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~ 234 (1053)
|++.+++ ...+.+ +++|.+++|+|.|++|++|+++++.+|+. |.+
T Consensus 174 l~~~~~~---------------------------------l~t~~g-~v~~~kV~ViG~G~iG~~aa~~a~~lGa~-V~v 218 (405)
T 4dio_A 174 YDRALPM---------------------------------MMTAAG-TVPAAKIFVMGAGVAGLQAIATARRLGAV-VSA 218 (405)
T ss_dssp CSSCSSC---------------------------------EEETTE-EECCCEEEEECCSHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHHCH---------------------------------HHCCCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEE
T ss_conf 6764112---------------------------------332678-85889999989759999999999977997-999
Q ss_pred CCCHHHH-HCCCCCCCCCCCCCEEEEEEEECCCCCC--CCCCCCCCCCCCCCCCCCCCC----CCCHHHHCCCCCCEEEE
Q ss_conf 9913432-0013457998654107874452211100--024999875510122395676----72024210597949997
Q 001559 235 SRLPELF-GKAKDQHGGASKRIFQVYGCVVTSEDMV--EHKDPTKGFDKADYYAHPEHY----NPVFHKKIAPYASVIVN 307 (1053)
Q Consensus 235 ~dl~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~y----~~~f~~~~~~~~diiIn 307 (1053)
.|.+... +.++ -+|..+...+.. +..++.++|+++. +++| ...+ .+.++.+||+|+
T Consensus 219 ~D~~~~~l~~~~------------~~G~~~~~~~~~~~~d~~~~~~ya~e~----s~~~~~~~~~~l-~e~l~~aDVVI~ 281 (405)
T 4dio_A 219 TDVRPAAKEQVA------------SLGAKFIAVEDEEFKAAETAGGYAKEM----SGEYQVKQAALV-AEHIAKQDIVIT 281 (405)
T ss_dssp ECSSTTHHHHHH------------HTTCEECCCCC---------------------CHHHHHHHHHH-HHHHHTCSEEEE
T ss_pred ECCCHHHHHHHH------------HCCCCEEECCCCCCCCCCCCCCHHHHC----CHHHHHHHHHHH-HHHHCCCCEEEE
T ss_conf 828888999999------------869924630321122233444023422----525555567679-998537999998
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECC
Q ss_conf 2013-689996439998998551899943999984138996321014655568727727998876788789983999328
Q 001559 308 CMYW-EQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVD 386 (1053)
Q Consensus 308 ~~~~-~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE~t~~~tt~~~P~~~~~~~~~~~~~~~~~~gV~i~~vd 386 (1053)
|+++ ++++|+|+|++|++.| | ||+||+|+|||+|||||++ ++++ .|.. +||+|||++
T Consensus 282 tvlipg~~ap~Lvt~emv~~M-k---~GsVIVDvA~d~GG~~e~t-~~~~----~~~~-------------~GV~~~gv~ 339 (405)
T 4dio_A 282 TALIPGRPAPRLVTREMLDSM-K---PGSVVVDLAVERGGNIEGA-EAGK----VTEV-------------GGVRIVGHL 339 (405)
T ss_dssp CCCCSSSCCCCCBCHHHHTTS-C---TTCEEEETTGGGTCSBTTC-CTTE----EEEE-------------TTEEEEECS
T ss_pred CCCCCCCCCCEEECHHHHHCC-C---CCCEEEEEECCCCCCCCCC-CCCC----EEEE-------------CCEEEEEEC
T ss_conf 986788878777669999508-9---9978999807889975556-7897----6898-------------998999758
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC-CC-CHHHHHHHHHCCCEECCCC
Q ss_conf 81058899999999999999999820699--877-67-8887724534298551899
Q 001559 387 TLPTEFAKEASQHFGDILLEFIGSLSSTV--DFT-EL-PSHLRRACIAHGGALTTLY 439 (1053)
Q Consensus 387 nLPs~lp~~AS~~fs~~l~~~l~~l~~~~--~~~-~~-~~~l~~a~i~~~G~lt~~~ 439 (1053)
|||+.+|++||++|+++++|||..|.+.+ .+. ++ |++|++++++++|++|++-
T Consensus 340 nlP~~vp~tAS~~ls~~~~~~l~~l~~~g~~~~~~~~~d~~l~~~~~~~~G~i~~~~ 396 (405)
T 4dio_A 340 NVAGRIAASASLLYAKNLVTFLETMVSKETKALALNMEDELVKATALTHGGAVVHPA 396 (405)
T ss_dssp SGGGGGHHHHHHHHHHHHHHHHHTTC-----CCCCCTTSHHHHHHEEEETTEEC---
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHCCEEEECCEECCHH
T ss_conf 988617999999999999999999971884111013349688586089799986889
No 5
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=1.00 E-value=1 Score=503.27 Aligned_cols=346 Identities=16% Similarity=0.211 Sum_probs=280.8
Q ss_pred CCEEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHCCCEECCCCCCCCEEEEEC
Q ss_conf 860999960049999731005957899998639999640599981899--998998467638949835887677799515
Q 001559 5 GNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDLSECGLVLGIK 82 (1053)
Q Consensus 5 ~~~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~~--~~~F~D~~Y~~aGA~I~~~~~~adiIl~VK 82 (1053)
+.|+|||+||++ +|||||||||++|++|+++| ++|+||+|+ +++|+|++|++|||+|++.++ ||+||+||
T Consensus 21 ~~m~IgvpkE~~-~~E~RValtP~~v~~L~~~G------~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~-adiIlkVk 92 (381)
T 3p2y_A 21 SMTLIGVPRESA-EGERRVALVPKVVEKLSARG------LEVVVESAAGAGALFSDADYERAGATIGDPWP-ADVVVKVN 92 (381)
T ss_dssp TTCEEEECCCCS-TTCCCCSSCHHHHHHHHHTT------CEEEECTTTTGGGTCCHHHHHHTTCEESCCTT-SSEEECSS
T ss_pred CCEEEEEEECCC-CCCCEECCCHHHHHHHHHCC------CEEEEECCCCCCCCCCHHHHHHCCCEEEEEEC-CCEEEEEC
T ss_conf 523999970699-99706068999999999689------99999689986687784889978978956643-88899958
Q ss_pred CCCCCC---CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC---CCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 999235---5799749997355333479999999999759929980243387---8865-34177899999999999985
Q 001559 83 QPKLEM---ILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD---NGRR-LLAFGKFAGRAGMIDFLHGL 155 (1053)
Q Consensus 83 ep~~~~---l~~~~t~i~fsh~~k~q~~n~~ll~~ll~k~itlid~E~i~~~---~~~r-l~~fg~~AG~ag~~~~l~~l 155 (1053)
||+++| +.+|+++++|+|+. +|++++++++++++|+|+||.|+|+ |.+. |++|+++|||++++.+++.+
T Consensus 93 ~p~~~e~~~l~~g~~l~~~lh~~----~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av~~aa~~l 168 (381)
T 3p2y_A 93 PPTSDEISQLKPGSVLIGFLAPR----TQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAVLLGASLS 168 (381)
T ss_dssp CCCHHHHTTSCTTCEEEECCCTT----TCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHCCCCCEEEEEECCC----CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHH
T ss_conf 89966786246897899982506----69999999997899499802241465566132120246889999999999986
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCC
Q ss_conf 27543048988754455100012199999999740322231599988788499998552128989999962999252479
Q 001559 156 GQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPS 235 (1053)
Q Consensus 156 g~~~l~~g~~tpf~~~~~~~~~~~~~~~~~a~~~~g~~i~~~g~p~~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~ 235 (1053)
++.+++ ...|.+ +++|.+++|+|.|++|+.|+++++++|++ |.+.
T Consensus 169 ~~~~~~---------------------------------l~~~~~-~v~~~kV~ViG~G~iG~~aa~~a~~lGa~-V~v~ 213 (381)
T 3p2y_A 169 TRFVPM---------------------------------LTTAAG-TVKPASALVLGVGVAGLQALATAKRLGAK-TTGY 213 (381)
T ss_dssp SSCSSC---------------------------------EECSSC-EECCCEEEEESCSHHHHHHHHHHHHHTCE-EEEE
T ss_pred HHHHHH---------------------------------HHCCCC-CCCCCEEEEECCHHHHHHHHHHHHHCCCE-EEEE
T ss_conf 553002---------------------------------432668-84889999989349999999999988898-9999
Q ss_pred CCHHHH-HCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCC-CC
Q ss_conf 913432-0013457998654107874452211100024999875510122395676720242105979499972013-68
Q 001559 236 RLPELF-GKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-EQ 313 (1053)
Q Consensus 236 dl~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~~~f~~~~~~~~diiIn~~~~-~~ 313 (1053)
|.+... +.+ ..+|+.+...+. ..++.++|+++...+........+ .+.++.+||+|+|+++ ++
T Consensus 214 D~~~~~l~~~------------~~lGa~~~~l~~--~~~~~~gya~~~~~~~~~~~~~~l-~e~l~~aDIVI~tv~iPg~ 278 (381)
T 3p2y_A 214 DVRPEVAEQV------------RSVGAQWLDLGI--DAAGEGGYARELSEAERAQQQQAL-EDAITKFDIVITTALVPGR 278 (381)
T ss_dssp CSSGGGHHHH------------HHTTCEECCCC---------------CHHHHHHHHHHH-HHHHTTCSEEEECCCCTTS
T ss_pred ECCHHHHHHH------------HHCCCEEEECCC--CCCCCCCCHHHHHHHHHHHHHHHH-HHHHHCCCEEEECCCCCCC
T ss_conf 6998999999------------985995774032--234556302332177776518889-9997169999989877876
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHH
Q ss_conf 99964399989985518999439999841389963210146555687277279988767887899839993288105889
Q 001559 314 RFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFA 393 (1053)
Q Consensus 314 ~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE~t~~~tt~~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp 393 (1053)
++|.|+|++|++.| | |+++|+|+|||+|||||++ ++++ .|.. +||+|||++|||+.+|
T Consensus 279 ~ap~Lvt~emv~~M-k---pGsVIVDvA~d~GG~~e~t-~~~~----~~~~-------------~gV~~~~v~nlP~~vp 336 (381)
T 3p2y_A 279 PAPRLVTAAAATGM-Q---PGSVVVDLAGETGGNCELT-EPGR----TIVH-------------HGVTITSPLNLPATMP 336 (381)
T ss_dssp CCCCCBCHHHHHTS-C---TTCEEEETTGGGTCSBTTC-CTTC----EEEE-------------TTEEEECCSCTGGGSH
T ss_pred CCCEEECHHHHHCC-C---CCCEEEEEECCCCCCCCCC-CCCC----EEEE-------------CCEEEEEECCCCHHHH
T ss_conf 56614659999418-8---9958999807999960546-5797----6889-------------9999996289721629
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC-CC-CHHHHHHHHHCCCE
Q ss_conf 9999999999999999820699877-67-88877245342985
Q 001559 394 KEASQHFGDILLEFIGSLSSTVDFT-EL-PSHLRRACIAHGGA 434 (1053)
Q Consensus 394 ~~AS~~fs~~l~~~l~~l~~~~~~~-~~-~~~l~~a~i~~~G~ 434 (1053)
++||++||+|+++||..+.+++.+. |+ |++++++++|++|-
T Consensus 337 ~tAS~~~s~~l~~~l~~~~~~g~~~~d~~d~i~~~~~~~~~g~ 379 (381)
T 3p2y_A 337 EHASELYAKNVTALLDLLLTDDGVAPDFTDEIVAASCITRTEG 379 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHEETTEECCCTTSHHHHHHBSSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCEEEEECCC
T ss_conf 9999999999999999985178726798465665208960787
No 6
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=1.00 E-value=1 Score=468.77 Aligned_cols=348 Identities=26% Similarity=0.389 Sum_probs=299.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.-+.++|+|+|+|++|++++..|++. . +|.|++|+.++++++++.. ....+|+.|.
T Consensus 13 ~~~~~~v~IiGaG~iG~~ia~~L~~~--~-------------------~V~V~~R~~~~a~~la~~~---~~~~~d~~~~ 68 (365)
T 2z2v_A 13 EGRHMKVLILGAGNIGRAIAWDLKDE--F-------------------DVYIGDVNNENLEKVKEFA---TPLKVDASNF 68 (365)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHTTT--S-------------------EEEEEESCHHHHHHHTTTS---EEEECCTTCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHCC--C-------------------EEEEEECCHHHHHHHHHHC---CEEEEECCCH
T ss_conf 57888699995789999999999769--9-------------------4999979999999988437---7489804898
Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 78997501660999448852117999998870790999513675699999999975986980688982478999999999
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMIN 730 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~~mla~~~~~ 730 (1053)
+++.++++++|+||||+|++++..++++|+++|+||+|++|.++++.+|++.|+++|+++++++|+|||+++|+++++++
T Consensus 69 ~~l~~ll~~~DvVIn~~P~~~~~~v~~a~l~~G~~~vD~s~~~~~~~~l~~~Ak~aG~~~l~g~G~dPG~~~~~a~~~~~ 148 (365)
T 2z2v_A 69 DKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQ 148 (365)
T ss_dssp HHHHHHHTTCSCEEECCCHHHHHHHHHHHHHTTCCEEECCCCSSCGGGGHHHHHHTTCEEECSCBTTTBHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999983799999998735249999999971995999368928999999999876998998997750078999999997
Q ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCEEEEECCCCCCE
Q ss_conf 86001484379985106988877778944654446988899840398258889989995398765664288721798650
Q 001559 731 HAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFA 810 (1053)
Q Consensus 731 ~~~~~~~~v~sf~~~~Gg~p~p~~~~~pl~y~~swsp~~~l~~~~~p~~~~~~G~~~~v~~~~~~~~~~~~~~p~~~~~~ 810 (1053)
++ + ++++++||||+| +.++||++|+|||||+++++++.+|+++|+||+++.+++.+.. +.++||++ .
T Consensus 149 ~~----~-v~~i~~~~Gglp--~~~~~p~~y~~sws~~~~i~~~~~~~~~~~~G~~~~v~~~~~~---~~~~~p~~---~ 215 (365)
T 2z2v_A 149 EL----D-LKEGYIYVGGLP--KDPKPPLYYKITWSPRDLIEEYTRPARVIRNGKVSKVDPLSEV---KKVKIGKF---E 215 (365)
T ss_dssp HS----C-EEEEEEEEEEEE--SSCCTTTCCCCCSCHHHHHHHHHSCEEEEETTEEEEECTTTCE---EEEEETTE---E
T ss_pred HC----C-CCEEEEEECCCC--CCCCCCCEEEEEECHHHHHHHHCCCCEEEECCEEEEECCCCCC---EEEECCCE---E
T ss_conf 64----8-888999951488--7789983368875377889985585418999999996687774---58975974---5
Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 21046888653101-03857676600001112256789999988708777888533358999889999999930166567
Q 001559 811 LECLPNRNSLVYGD-IYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKM 889 (1053)
Q Consensus 811 ~e~~~n~dsl~~~~-~ygi~~~~~tl~r~TlRy~G~~~~~~~L~~lGLl~~~~~~~~~~g~~~s~~~~~~~~l~~~~~~~ 889 (1053)
+|+|+|. ++. + .|++ + ++++.|+|+||+||++.|++|++|||++.++++ .
T Consensus 216 ~e~~~~~-~l~--sl~~~~-~-~~~~~~~t~r~~g~~~~~~~L~~lGl~~~~~~~-----------~------------- 266 (365)
T 2z2v_A 216 FEAFISD-GLR--SMLETI-N-SERLEEWTLRWPGHLEKIKVLRELGFFKPENLD-----------F------------- 266 (365)
T ss_dssp EEEEEES-CCT--THHHHS-C-CSEEEEEEEECTTHHHHHHHHHHTTTTSHHHHH-----------H-------------
T ss_pred EEEEECC-CHH--HHHCCC-C-CCEEEEEEEECCCHHHHHHHHHHCCCCCCCHHH-----------H-------------
T ss_conf 8998377-746--674377-6-775888211434899999999977999874488-----------9-------------
Q ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 99999867899999830765024559999998786425557534789899257858997876048999986599999999
Q 001559 890 GEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVE 969 (1053)
Q Consensus 890 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~d~~~~~L~~~l~~~p~e~D~v~l~~~v~ 969 (1053)
+++.|.++++|.+ +|+++|+++++
T Consensus 267 ------------------------------------------------------~~~~l~p~~~~~~--~d~~~~~v~~~ 290 (365)
T 2z2v_A 267 ------------------------------------------------------TLRVIEPLMRYET--KDFSIMKVVGK 290 (365)
T ss_dssp ------------------------------------------------------HHHHHGGGGCSSC--CEEEEEEEEEE
T ss_pred ------------------------------------------------------HHHCCCCCCCCCC--CCEEEEEEEEE
T ss_conf ------------------------------------------------------9880041012799--98899999998
Q ss_pred EECCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC----CCCCHHHHHHHHHCC
Q ss_conf 9969980332699999992102688766621102358999999998738308983554558----886179999998679
Q 001559 970 VEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIE----PEVYVPALDMLQAYG 1045 (1053)
Q Consensus 970 g~~~~g~~~~~~~~tl~~~g~~~~~~g~samarttG~p~aiaA~lil~g~i~~~GV~~P~~----~~~y~p~l~~L~~~G 1045 (1053)
|. + + +.++.+.... +.++|||++|||+|++++|+||++|+| ++||+.||+ .++|+|||++|+++|
T Consensus 291 g~-~--~---~~~~~~~~~~----~~g~sams~ttg~p~~i~a~li~~G~~-~~Gv~~pE~~~~~~~~~~~~l~~L~~~G 359 (365)
T 2z2v_A 291 GE-E--G---EMEFFLYDEE----DSMFSSMSRVTGFTAAIISRIVAENTC-TFGVIPPEILGMREDTFRRIIDELKERG 359 (365)
T ss_dssp ES-S--C---EEEEEEEEEC----CSSSCHHHHHHHHHHHHHHHHHHTTCS-CSEEECGGGGTSSHHHHHHHHHHHHHTT
T ss_pred CC-C--E---EEEEEEEECC----CCCCEEEEHHHHHHHHHHHHHHHCCCC-CCCEECHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 68-6--5---8999998348----986347666640178999999977985-6652468772775567889999999779
Q ss_pred CEEEEE
Q ss_conf 989998
Q 001559 1046 IKLVEK 1051 (1053)
Q Consensus 1046 I~~~e~ 1051 (1053)
|.++|+
T Consensus 360 i~~~~~ 365 (365)
T 2z2v_A 360 ISIEGT 365 (365)
T ss_dssp CCEEC-
T ss_pred CCEECC
T ss_conf 814239
No 7
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=457.80 Aligned_cols=349 Identities=26% Similarity=0.377 Sum_probs=297.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.-++|||+|+|||++|+.++++|++.. +|.+++++.++++++.+ .+..+.+|+.|.
T Consensus 13 ~g~~mkilvlGaG~vG~~~~~~L~~~~---------------------~v~~~~~~~~~~~~~~~---~~~~~~~d~~d~ 68 (365)
T 3abi_A 13 EGRHMKVLILGAGNIGRAIAWDLKDEF---------------------DVYIGDVNNENLEKVKE---FATPLKVDASNF 68 (365)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHTTTS---------------------EEEEEESCHHHHHHHTT---TSEEEECCTTCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHCCC---------------------CEEEEECCHHHHHHHHC---CCCCEEEECCCH
T ss_conf 678668999998789999999985689---------------------86999957899998760---088179845999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 78997501660999448852117999998870790999513675699999999975986980688982478999999999
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMIN 730 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~~mla~~~~~ 730 (1053)
+.|.++++++|+||||+|+++|..++++|+++|+||+|++|.++++.+|++.|+++|++++++||+|||++||+++++++
T Consensus 69 ~~l~~~~~~~DvVi~~~p~~~~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~a~~~~~ 148 (365)
T 3abi_A 69 DKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQ 148 (365)
T ss_dssp HHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCBTTTBHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99999971798999915875510589998742866574302320211002332368822661577887538899999987
Q ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCEEEEECCCCCCE
Q ss_conf 86001484379985106988877778944654446988899840398258889989995398765664288721798650
Q 001559 731 HAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFA 810 (1053)
Q Consensus 731 ~~~~~~~~v~sf~~~~Gg~p~p~~~~~pl~y~~swsp~~~l~~~~~p~~~~~~G~~~~v~~~~~~~~~~~~~~p~~~~~~ 810 (1053)
+++ +.++++||||+| +.++||++|+|+|||+++++++.+|+++|+||+++.+++.+.. +.+++ +++.
T Consensus 149 ~~~-----~~~~~~~~gg~p--~~~~~~~~y~~~~s~~~~i~~~~~~~~~~~~G~~~~v~~~~~~---~~~~~---~~~~ 215 (365)
T 3abi_A 149 ELD-----LKEGYIYVGGLP--KDPKPPLYYKITWSPRDLIEEYTRPARVIRNGKVSKVDPLSEV---KKVKI---GKFE 215 (365)
T ss_dssp HSC-----EEEEEEEEEEEE--SSCCTTTCCCCCSCHHHHHHHHHSCEEEEETTEEEEECTTTCE---EEEEE---TTEE
T ss_pred HCC-----CCCEEEEECCCC--CCCCCCCHHCEEECHHHHHHHHCCCCEEEECCEEEEECCCCCC---EEEEC---CCCC
T ss_conf 326-----542068732567--7788850100032033357762777079987818995686753---69861---7833
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 21046888653101038576766000011122567899999887087778885333589998899999999301665679
Q 001559 811 LECLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMG 890 (1053)
Q Consensus 811 ~e~~~n~dsl~~~~~ygi~~~~~tl~r~TlRy~G~~~~~~~L~~lGLl~~~~~~~~~~g~~~s~~~~~~~~l~~~~~~~~ 890 (1053)
+++|+++++..+.+.|. ++++.++|+||+||++.|++|+++||++.++. +++...
T Consensus 216 ~~~~~~~~~~~~~~~~~----~~~~~~~t~r~~g~~~~~~~L~~lGl~~~~~~------------~~~~~~--------- 270 (365)
T 3abi_A 216 FEAFISDGLRSMLETIN----SERLEEWTLRWPGHLEKIKVLRELGFFKPENL------------DFTLRV--------- 270 (365)
T ss_dssp EEEEECSCCTTHHHHSC----CSEEEEEEEECTTHHHHHHHHHHTTTTSHHHH------------HHHHHH---------
T ss_pred EEEECCCCHHHHHHCCC----CCCEEEEECCCCCHHHHHHHHHHHCCCCCCHH------------HHHHHH---------
T ss_conf 33124666154540357----67304541036548999999988447896458------------888766---------
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEE
Q ss_conf 99998678999998307650245599999987864255575347898992578589978760489999865999999999
Q 001559 891 EAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEV 970 (1053)
Q Consensus 891 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~d~~~~~L~~~l~~~p~e~D~v~l~~~v~g 970 (1053)
+..++ ..+++|+++|++...+
T Consensus 271 ---------------------------------------------------------l~~~~--~~~~~d~~~~~V~g~~ 291 (365)
T 3abi_A 271 ---------------------------------------------------------IEPLM--RYETKDFSIMKVVGKG 291 (365)
T ss_dssp ---------------------------------------------------------HGGGG--CSSCCEEEEEEEEEEE
T ss_pred ---------------------------------------------------------HHHHC--CCCCCCEEEEEEEEEE
T ss_conf ---------------------------------------------------------47751--7766755999999994
Q ss_pred ECCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC----CCCCHHHHHHHHHCCC
Q ss_conf 969980332699999992102688766621102358999999998738308983554558----8861799999986799
Q 001559 971 EFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIE----PEVYVPALDMLQAYGI 1046 (1053)
Q Consensus 971 ~~~~g~~~~~~~~tl~~~g~~~~~~g~samarttG~p~aiaA~lil~g~i~~~GV~~P~~----~~~y~p~l~~L~~~GI 1046 (1053)
.++ +.++++...++ .+++|||+|||+|++++|+++++|.++ +||++||. .+.++||+++|+++||
T Consensus 292 --~~~----~~~~~~~~~~d----~~~sAMa~tTG~~~a~~a~lil~g~i~-~GV~~PE~l~~~~~~~~~~l~~L~~~GI 360 (365)
T 3abi_A 292 --EEG----EMEFFLYDEED----SMFSSMSRVTGFTAAIISRIVAENTCT-FGVIPPEILGMREDTFRRIIDELKERGI 360 (365)
T ss_dssp --TTE----EEEEEEEEECC----SSSCHHHHHHHHHHHHHHHHHHTTCSC-SEEECTHHHHHSHHHHHHHHHHHHHTTC
T ss_pred --CCC----EEEEEEEECCC----CCCCHHHHHHHHHHHHHHHHHHCCCCC-CCEECHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf --797----19999998159----975299999999999999999769999-9788953236625569999999998798
Q ss_pred EEEEE
Q ss_conf 89998
Q 001559 1047 KLVEK 1051 (1053)
Q Consensus 1047 ~~~e~ 1051 (1053)
.|+|+
T Consensus 361 ~I~eT 365 (365)
T 3abi_A 361 SIEGT 365 (365)
T ss_dssp CEEC-
T ss_pred EEEEC
T ss_conf 36439
No 8
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=1.00 E-value=1 Score=405.95 Aligned_cols=374 Identities=18% Similarity=0.209 Sum_probs=299.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-----CCEEEEECCC
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199-----9628991279
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-----NAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-----~~~~~~~d~~ 648 (1053)
+++|+|+|+|++|+.+++.|++.+.++ ..|.+++|+.++++++++.++ ++..+.+|++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~-----------------~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~ 63 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVF-----------------SHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDAD 63 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTC-----------------CEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCC-----------------EEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 988999897899999999998489996-----------------089999899999999999855524982699995699
Q ss_pred CHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHHHCCEEEEEE-CCCH--------HHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 97789975016--6099944885211799999887079099951-3675--------69999999997598698068898
Q 001559 649 DHKSLCKCISQ--VEIVISLLPASCHVMVANACIEFKKHLVTAS-YIDD--------SMSKLDEKAKGAGITILGEMGLD 717 (1053)
Q Consensus 649 d~~~l~~~i~~--~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s-y~~~--------~~~~L~~~Ak~~Gv~ii~g~G~d 717 (1053)
|.+++.+++++ +|+|||++|++.+.+++++|+++|+||+|++ |.++ ....+++.|+++|+++++++|++
T Consensus 64 d~~~l~~~l~~~~~DvVin~ag~~~~~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~~ 143 (405)
T 4ina_A 64 SIEELVALINEVKPQIVLNIALPYQDLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGFD 143 (405)
T ss_dssp CHHHHHHHHHHHCCSEEEECSCGGGHHHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBTT
T ss_pred CHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCC
T ss_conf 98999999986288899987774357599999998287789966988700002456789988999998299999808877
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCC--CCCHHHHHHHCCCCCEEEECCEEEEECCCCCC
Q ss_conf 2478999999999860014843799851069888777789446544--46988899840398258889989995398765
Q 001559 718 PGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKF--SWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLY 795 (1053)
Q Consensus 718 PGi~~mla~~~~~~~~~~~~~v~sf~~~~Gg~p~p~~~~~pl~y~~--swsp~~~l~~~~~p~~~~~~G~~~~v~~~~~~ 795 (1053)
||++++++.+++.+. .++++++.++.... .+++|+| +|||+++++++.+|+++|++|+++.+++.+..
T Consensus 144 PG~~~l~a~~~~~~~---~~~i~~i~i~~~~g-------g~~g~~~~~~~sp~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 213 (405)
T 4ina_A 144 PGVTNVFCAYAQKHY---FDEIHEIDILDCNA-------GDHGYPFATNFNPEINLREVSSKGRYWENGEWIETEPMEIM 213 (405)
T ss_dssp TBHHHHHHHHHHHHT---CSEEEEEEEEEEEC-------CBCSSSSCCSSCHHHHHHHTTSCEEEEETTEEEEESTTCCE
T ss_pred CCHHHHHHHHHHHHC---CCCCCEEEEEEECC-------CCCCCCCEEEECHHHHHHHHCCCCEEEECCEEEEECCCCEE
T ss_conf 017899999999862---68664899999668-------87786512000888999984688479989989995687602
Q ss_pred CCCEEEEECCCCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 664288721798650210468--886531010385767660000111225678999998870877788853335899988
Q 001559 796 DSAEKFRIADLPAFALECLPN--RNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPT 873 (1053)
Q Consensus 796 ~~~~~~~~p~~~~~~~e~~~n--~dsl~~~~~ygi~~~~~tl~r~TlRy~G~~~~~~~L~~lGLl~~~~~~~~~~g~~~s 873 (1053)
+.++||+++ ..++|.. .+...+.+.+ +.++++..++.++++|.+.|+.|++|||++.+|+.+ .|..++
T Consensus 214 ---~~~~fp~~G--~~~~y~~~~~e~~tl~~~~---~~~~~v~~~~~~~~~~~~~~~~L~~lGl~~~~~v~~--~g~~v~ 283 (405)
T 4ina_A 214 ---QVWDYPEVG--PKDSYLLYHEELESLVRNI---KGLKRIRFFMTFGQSYLTHMRCLENVGMLRIDEIEV--NGCKVV 283 (405)
T ss_dssp ---EEEEETTTE--EEEEEEECCTHHHHHHHHS---TTCCEEEEEEECCHHHHHHHHHHHHHTTTCCSCEEE--TTEEEC
T ss_pred ---EEEECCCCC--EEEEEEECCCCHHHHHHHC---CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEE--CCCEEC
T ss_conf ---798888974--1658971797577897648---776468862366989999999998748777785641--790435
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999301665679999986789999983076502455999999878642555753478989925785899787604
Q 001559 874 FRMFLCEILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLA 953 (1053)
Q Consensus 874 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~d~~~~~L~~~l~ 953 (1053)
|+++++++|+ ++++
T Consensus 284 p~~~l~~~l~------------------------------------------------------------------~~~~ 297 (405)
T 4ina_A 284 PIQVLKALLP------------------------------------------------------------------DPAS 297 (405)
T ss_dssp HHHHHHHHSC------------------------------------------------------------------CHHH
T ss_pred HHHHHHHHCC------------------------------------------------------------------HHHC
T ss_conf 9999998654------------------------------------------------------------------0102
Q ss_pred CCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC
Q ss_conf 89999865999999999969980332699999992102688766621102358999999998738308983554558886
Q 001559 954 YSSTEEDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEV 1033 (1053)
Q Consensus 954 ~~p~e~D~v~l~~~v~g~~~~g~~~~~~~~tl~~~g~~~~~~g~samarttG~p~aiaA~lil~g~i~~~GV~~P~~~~~ 1033 (1053)
++|+++|+++|+|.++|. +||++++...++++++.+.+.+.+.+||++|||+|++|+|+||++|+|+++||++||+.+
T Consensus 298 ~~~~~~d~~~i~~~v~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~a~~~ttg~p~~i~a~li~~G~~~~~Gv~~~e~~~- 375 (405)
T 4ina_A 298 LASRTKGKTNIGCYIKGI-KEGKARTIYIYNVCDHESCYREVNAQAISYTTGVPAMIGAKLMLEGKWSGKGVFNMEELD- 375 (405)
T ss_dssp HTTTCBSEEEEEEEEEEE-ETTEEEEEEEEEEEEHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTTSSCCSEEEEGGGSC-
T ss_pred CCCCCCCEEEEEEEEEEE-ECCEEEEEEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEECCCCCC-
T ss_conf 499998748999999999-899489999999750642345566368885337369999999957964788564611168-
Q ss_pred CHHHHHHHHHCCCEEEEEC
Q ss_conf 1799999986799899981
Q 001559 1034 YVPALDMLQAYGIKLVEKS 1052 (1053)
Q Consensus 1034 y~p~l~~L~~~GI~~~e~~ 1052 (1053)
++|||++|+++||.|+++.
T Consensus 376 ~~~fl~~l~~~Gi~~~~~~ 394 (405)
T 4ina_A 376 PDPFMDELNKQGLPWEVKE 394 (405)
T ss_dssp SHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHCCCCEEEEE
T ss_conf 2899999986699749977
No 9
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=1.00 E-value=1 Score=387.12 Aligned_cols=358 Identities=19% Similarity=0.281 Sum_probs=268.8
Q ss_pred CEEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHCCCEECCC--CCCCCEEEEE
Q ss_conf 60999960049999731005957899998639999640599981899--9989984676389498358--8767779951
Q 001559 6 NGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISED--LSECGLVLGI 81 (1053)
Q Consensus 6 ~~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~~--~~~F~D~~Y~~aGA~I~~~--~~~adiIl~V 81 (1053)
...|++++|.+ +|||||+++|+.|++|+++| ++|+||+++ .++|+|++|++|||+|+++ +..||+|+++
T Consensus 7 ~~~~~~~~e~~-~~E~Rv~ltP~~v~~L~~~G------~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~adiil~v 79 (401)
T 1x13_A 7 HGRIGIPRERL-TNETRVAATPKTVEQLLKLG------FTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKV 79 (401)
T ss_dssp -CEEEECCCCS-TTCCCCSCCHHHHHHHHHTT------CEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGSSSEEECS
T ss_pred CCCEEECCCCC-CCCEEECCCHHHHHHHHHCC------CEEEEEECCCCCCCCCHHHHHHCCCEEECCHHHHCCCEEEEE
T ss_conf 77313002689-99704479999999999789------989999789855687867798789899661898438859980
Q ss_pred CCCCCCCC---CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC-CCCCC---CHHHHHHHHHHHHHHHHH
Q ss_conf 59992355---799749997355333479999999999759929980243387-88653---417789999999999998
Q 001559 82 KQPKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD-NGRRL---LAFGKFAGRAGMIDFLHG 154 (1053)
Q Consensus 82 Kep~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~ll~k~itlid~E~i~~~-~~~rl---~~fg~~AG~ag~~~~l~~ 154 (1053)
|+|..+++ .+++++++|.|+. +|+.+++++.+++|++++||.+++. .++++ .+++.+||+.++..+.+.
T Consensus 80 k~p~~~~i~~l~~~~~li~~~~~~----~d~~~~~al~~~gI~v~~~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~ 155 (401)
T 1x13_A 80 NAPLDDEIALLNPGTTLVSFIWPA----QNPELMQKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHE 155 (401)
T ss_dssp SCCCHHHHTTCCTTCEEEECCCGG----GCHHHHHHHHHTTCEEEEGGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCEEEEECCC----CCHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999861799589992477----8999999999779979996022234432466267789999999999999985
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEECC
Q ss_conf 52754304898875445510001219999999974032223159998878849999855212898999996299925247
Q 001559 155 LGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEP 234 (1053)
Q Consensus 155 lg~~~l~~g~~tpf~~~~~~~~~~~~~~~~~a~~~~g~~i~~~g~p~~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~ 234 (1053)
+++.+. ++ ....+ ++++.+++|+|+|++|++|+++++.+|++ |..
T Consensus 156 ~~~~~~-----------~~-------------------~~~~g----~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~-V~v 200 (401)
T 1x13_A 156 FGRFFT-----------GQ-------------------ITAAG----KVPPAKVMVIGAGVAGLAAIGAANSLGAI-VRA 200 (401)
T ss_dssp CSSCSS-----------CE-------------------EETTE----EECCCEEEEECCSHHHHHHHHHHHHTTCE-EEE
T ss_pred CCCCCC-----------CC-------------------EEECC----CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEE
T ss_conf 454568-----------86-------------------01015----72899899989879999999999977998-999
Q ss_pred CCCHHHH-HCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCC-C
Q ss_conf 9913432-0013457998654107874452211100024999875510122395676720242105979499972013-6
Q 001559 235 SRLPELF-GKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-E 312 (1053)
Q Consensus 235 ~dl~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~~~f~~~~~~~~diiIn~~~~-~ 312 (1053)
.|.+... +..+ + .|.. + +.+...++.+++ ++|++.......+.|...+ .+.++.+|++|+|++| |
T Consensus 201 ~D~~~~~~~~~~-~--lGa~-----~-~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~l-~e~~~~aDvVI~~~~~pg 267 (401)
T 1x13_A 201 FDTRPEVKEQVQ-S--MGAE-----F-LELDFKEEAGSG---DGYAKVMSDAFIKAEMELF-AAQAKEVDIIVTTALIPG 267 (401)
T ss_dssp ECSCGGGHHHHH-H--TTCE-----E-CCC--------C---CHHHHHHSHHHHHHHHHHH-HHHHHHCSEEEECCCCTT
T ss_pred ECCCHHHHHHHH-H--CCCE-----E-EEECCCCCCCCC---CCCHHHCCHHHHHHHHHHH-HHHHCCCCEEEECCCCCC
T ss_conf 808888999999-7--5998-----9-971120012345---5301222688887778899-998678999997886689
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 89996439998998551899943999984138996321014655568727727998876788789983999328810588
Q 001559 313 QRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF 392 (1053)
Q Consensus 313 ~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE~t~~~tt~~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l 392 (1053)
.++|.++++++++.| + |+++|+|++|+.||+|+++ +.++|++.. +||+++|++|+|+++
T Consensus 268 ~~ap~li~~~~l~~m-k---~g~vIVdva~~~Gg~v~~~----~~~~p~~~~-------------~gv~i~g~~~~p~~~ 326 (401)
T 1x13_A 268 KPAPKLITREMVDSM-K---AGSVIVDLAAQNGGNCEYT----VPGEIFTTE-------------NGVKVIGYTDLPGRL 326 (401)
T ss_dssp SCCCCCBCHHHHHTS-C---TTCEEEETTGGGTCSBTTC----CTTSEEECT-------------TSCEEECCSCTGGGS
T ss_pred CCCCEEECHHHHHCC-C---CCCEEEEECCCCCCCCCCC----CCCCCEEEE-------------CCEEEEEECCCCCCC
T ss_conf 987854179999507-8---9968999768999986755----589846888-------------998999628974418
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CCC-CC-CHHHHHHHHHCCCEECCCCCCHH
Q ss_conf 99999999999999999820699--877-67-88877245342985518997336
Q 001559 393 AKEASQHFGDILLEFIGSLSSTV--DFT-EL-PSHLRRACIAHGGALTTLYEYIP 443 (1053)
Q Consensus 393 p~~AS~~fs~~l~~~l~~l~~~~--~~~-~~-~~~l~~a~i~~~G~lt~~~~yi~ 443 (1053)
|++||++|++++++||..+..+. .+. ++ |+++++++++++|+||++....+
T Consensus 327 ~~~a~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 381 (401)
T 1x13_A 327 PTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTVIRAGEITWPAPPIQ 381 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSSSCCCCCTTSHHHHHHEEEETTEECCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCEEEECCEECCCCCCCC
T ss_conf 9999999998699999997157545631367868872686876988868999999
No 10
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=1.00 E-value=1 Score=385.55 Aligned_cols=351 Identities=17% Similarity=0.255 Sum_probs=268.8
Q ss_pred EEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHCCCEECCC----CCCCCEEEE
Q ss_conf 0999960049999731005957899998639999640599981899--9989984676389498358----876777995
Q 001559 7 GVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISED----LSECGLVLG 80 (1053)
Q Consensus 7 ~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~~--~~~F~D~~Y~~aGA~I~~~----~~~adiIl~ 80 (1053)
|+|||+||++ +|||||||+|++|++|++.| ++|+||+|+ .++|+|++|++|||+|+++ +++||+|++
T Consensus 1 m~igv~~e~~-~~E~Rv~l~P~~v~~L~~~G------~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~ 73 (384)
T 1l7d_A 1 MKIAIPKERR-PGEDRVAISPEVVKKLVGLG------FEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWK 73 (384)
T ss_dssp CEEEECCCCS-TTCCCCSCCHHHHHHHHHTT------CEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEE
T ss_pred CEEEEECCCC-CCCCCCCCCHHHHHHHHHCC------CEEEEECCCCCCCCCCHHHHHHCCCEEECCHHHHHCCCCEEEE
T ss_conf 9899971699-99852287989999999689------9999974998557878799997898996575453158999998
Q ss_pred ECCC-----CCCCC---CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC-CCCCC---CHHHHHHHHHHH
Q ss_conf 1599-----92355---799749997355333479999999999759929980243387-88653---417789999999
Q 001559 81 IKQP-----KLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD-NGRRL---LAFGKFAGRAGM 148 (1053)
Q Consensus 81 VKep-----~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~ll~k~itlid~E~i~~~-~~~rl---~~fg~~AG~ag~ 148 (1053)
+|+| +.+++ .+++.+++|.|+. +|+.+++++.++++++++||.+++. .++++ ++++..||+.++
T Consensus 74 v~~p~~~~~~~~~i~~l~~~~~~i~~~~~~----~~~~~~~~~~~~gi~~~~~e~~~~~~~~~~l~~l~~~a~~ag~~av 149 (384)
T 1l7d_A 74 VQRPMTAEEGTDEVALIKEGAVLMCHLGAL----TNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAV 149 (384)
T ss_dssp EECCCCGGGSCCGGGGSCTTCEEEEECCGG----GCHHHHHHHHHTTCEEEEGGGCCCSGGGGGGCHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCHHHHHHHCCCCEEEEEECCC----CCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 067665668978998525378899993444----8999999999779989982245553234554210077799899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 99999852754304898875445510001219999999974032223159998878849999855212898999996299
Q 001559 149 IDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLP 228 (1053)
Q Consensus 149 ~~~l~~lg~~~l~~g~~tpf~~~~~~~~~~~~~~~~~a~~~~g~~i~~~g~p~~i~p~~v~i~G~G~vg~gA~~~~~~Lg 228 (1053)
..+.+.+++.+ |++ ..|++ ++++.+++|+|+|++|++|+++++.+|
T Consensus 150 ~~~~~~~~~~~-------~~~--------------------------~~~~~-~l~g~~V~ViGaG~iG~~aa~~a~~~G 195 (384)
T 1l7d_A 150 IDGAYEFARAF-------PMM--------------------------MTAAG-TVPPARVLVFGVGVAGLQAIATAKRLG 195 (384)
T ss_dssp HHHHHHCSSCS-------SCE--------------------------EETTE-EECCCEEEEECCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCC-------CCH--------------------------HCCCC-CCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 99998740213-------412--------------------------11578-989998999898899999999999789
Q ss_pred CCEECCCCCHHHH-HCCCCCCCCCCCCCEEEEEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCE
Q ss_conf 9252479913432-00134579986541078744522---1110002499987551012239567672024210597949
Q 001559 229 HTFVEPSRLPELF-GKAKDQHGGASKRIFQVYGCVVT---SEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASV 304 (1053)
Q Consensus 229 a~~V~~~dl~~~~-~~~~~~~~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~y~~~f~~~~~~~~di 304 (1053)
++ |.+.|.+... +.+ ..+|+.+. ..+..+. .+.++|++....+........+ .+.++.+|+
T Consensus 196 a~-V~~~d~~~~~~~~~------------~~~Ga~~~~i~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~l-~~~~~~aDv 260 (384)
T 1l7d_A 196 AV-VMATDVRAATKEQV------------ESLGGKFITVDDEAMKTA-ETAGGYAKEMGEEFRKKQAEAV-LKELVKTDI 260 (384)
T ss_dssp CE-EEEECSCSTTHHHH------------HHTTCEECCC------------------------CCHHHHH-HHHHTTCSE
T ss_pred CE-EEEEECCHHHHHHH------------HHCCCEEEEECCCCCCCC-CCCCCCHHHCCHHHHHHHHHHH-HHHHCCCCE
T ss_conf 98-99970898999999------------986996896035200012-3456411113777776529999-998689999
Q ss_pred EEECCCC-CCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 9972013-689996439998998551899943999984138996321014655568727727998876788789983999
Q 001559 305 IVNCMYW-EQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQ 383 (1053)
Q Consensus 305 iIn~~~~-~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE~t~~~tt~~~P~~~~~~~~~~~~~~~~~~gV~i~ 383 (1053)
+|+|++| +.++|.++++++++.| + |+++|+|++|+.||+||++. +++ .+.. ++|+++
T Consensus 261 Vi~~~~~pg~~~~~li~~~~l~~m-k---~g~vivdva~~~gg~~~~~~-~~~----~~~~-------------~~v~i~ 318 (384)
T 1l7d_A 261 AITTALIPGKPAPVLITEEMVTKM-K---PGSVIIDLAVEAGGNCPLSE-PGK----IVVK-------------HGVKIV 318 (384)
T ss_dssp EEECCCCTTSCCCCCSCHHHHTTS-C---TTCEEEETTGGGTCSSTTCC-TTC----EEEE-------------TTEEEE
T ss_pred EEECCCCCCCCCCEEECHHHHHCC-C---CCCEEEEEECCCCCCEECCC-CCC----EEEE-------------CCEEEE
T ss_conf 998976389988814189999528-9---99889999668999740014-883----8988-------------998999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC-CC-CHHHHHHHHHCCCEECCCC
Q ss_conf 32881058899999999999999999820699--877-67-8887724534298551899
Q 001559 384 AVDTLPTEFAKEASQHFGDILLEFIGSLSSTV--DFT-EL-PSHLRRACIAHGGALTTLY 439 (1053)
Q Consensus 384 ~vdnLPs~lp~~AS~~fs~~l~~~l~~l~~~~--~~~-~~-~~~l~~a~i~~~G~lt~~~ 439 (1053)
|++|+|+.+|++||++|++++++|+..|.+.+ .+. ++ |++|++++++++|++|++.
T Consensus 319 g~~~~p~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~~~ 378 (384)
T 1l7d_A 319 GHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPA 378 (384)
T ss_dssp CCSSGGGGGHHHHHHHHHHHHHHHHGGGEETTTTEECCCTTCHHHHHHEEEETTEECCC-
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHCCEEEECCEECCHH
T ss_conf 968973151999999999869999999984785323201259788667398399981833
Done!