Query 001560
Match_columns 1052
No_of_seqs 600 out of 3879
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:50:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0735 AAA+-type ATPase [Post 100.0 5E-115 1E-119 991.3 57.0 826 1-1050 3-840 (952)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 1.8E-79 3.8E-84 691.5 34.1 438 550-1049 186-683 (802)
3 KOG0730 AAA+-type ATPase [Post 100.0 3.7E-70 8.1E-75 627.2 30.6 414 554-1050 184-607 (693)
4 KOG0736 Peroxisome assembly fa 100.0 1.2E-59 2.5E-64 543.1 31.2 393 590-1047 431-845 (953)
5 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-55 2.5E-60 550.6 36.9 436 550-1050 174-627 (733)
6 COG0464 SpoVK ATPases of the A 100.0 1.4E-45 3.1E-50 442.2 31.4 400 579-1050 7-415 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 7.7E-39 1.7E-43 346.5 16.0 172 838-1048 145-325 (406)
8 KOG0741 AAA+-type ATPase [Post 100.0 7.6E-38 1.6E-42 349.1 24.4 374 548-950 215-611 (744)
9 COG1222 RPT1 ATP-dependent 26S 100.0 7.9E-37 1.7E-41 330.9 18.2 249 548-824 145-393 (406)
10 KOG0730 AAA+-type ATPase [Post 100.0 1.4E-33 3E-38 325.7 17.5 249 549-826 429-677 (693)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 1.9E-32 4.1E-37 311.0 19.4 259 550-827 507-773 (802)
12 KOG0727 26S proteasome regulat 100.0 2.1E-32 4.6E-37 281.6 13.6 172 838-1048 149-329 (408)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 6E-31 1.3E-35 309.5 26.8 306 655-1049 81-396 (489)
14 KOG0728 26S proteasome regulat 100.0 2E-31 4.4E-36 274.0 13.6 173 838-1049 141-322 (404)
15 KOG0734 AAA+-type ATPase conta 100.0 1.7E-31 3.8E-36 298.7 13.8 166 840-1048 300-474 (752)
16 KOG0734 AAA+-type ATPase conta 100.0 1E-30 2.2E-35 292.6 16.6 227 548-795 298-524 (752)
17 KOG0726 26S proteasome regulat 100.0 3.7E-31 8.1E-36 277.4 12.2 172 839-1049 180-360 (440)
18 KOG0729 26S proteasome regulat 100.0 1.3E-30 2.9E-35 270.1 15.4 171 839-1048 172-351 (435)
19 KOG0738 AAA+-type ATPase [Post 100.0 6.5E-30 1.4E-34 278.2 16.7 262 549-828 207-474 (491)
20 KOG0732 AAA+-type ATPase conta 100.0 7.9E-30 1.7E-34 310.3 19.1 387 550-952 261-668 (1080)
21 KOG0739 AAA+-type ATPase [Post 100.0 2E-30 4.2E-35 272.9 11.7 168 838-1048 127-302 (439)
22 TIGR02639 ClpA ATP-dependent C 100.0 8.8E-29 1.9E-33 308.4 26.2 351 553-951 181-567 (731)
23 KOG0652 26S proteasome regulat 100.0 8.8E-30 1.9E-34 263.3 12.8 171 839-1048 166-345 (424)
24 KOG0736 Peroxisome assembly fa 100.0 4.5E-29 9.7E-34 290.2 20.1 261 550-827 668-936 (953)
25 KOG0738 AAA+-type ATPase [Post 100.0 4.6E-30 9.9E-35 279.3 9.5 167 839-1048 207-385 (491)
26 KOG0739 AAA+-type ATPase [Post 100.0 1.7E-29 3.6E-34 265.9 11.4 226 550-796 129-354 (439)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 1.9E-28 4.1E-33 288.5 21.1 243 550-827 224-467 (489)
28 PF09262 PEX-1N: Peroxisome bi 100.0 7.4E-30 1.6E-34 225.2 5.8 77 94-170 1-80 (80)
29 PTZ00454 26S protease regulato 100.0 3E-28 6.6E-33 281.2 20.6 249 549-825 140-388 (398)
30 KOG0728 26S proteasome regulat 100.0 1.5E-28 3.3E-33 252.9 15.4 247 549-823 142-388 (404)
31 KOG0731 AAA+-type ATPase conta 100.0 2.3E-28 4.9E-33 291.3 18.9 250 548-824 305-554 (774)
32 PRK11034 clpA ATP-dependent Cl 100.0 1.4E-27 3.1E-32 293.6 26.1 353 553-951 185-571 (758)
33 KOG0652 26S proteasome regulat 100.0 1.7E-28 3.7E-33 253.8 14.0 246 550-823 167-412 (424)
34 KOG0727 26S proteasome regulat 100.0 3.6E-28 7.8E-33 250.4 15.9 248 548-823 149-396 (408)
35 KOG0731 AAA+-type ATPase conta 100.0 1.5E-28 3.2E-33 292.9 14.5 167 839-1048 306-485 (774)
36 KOG0737 AAA+-type ATPase [Post 100.0 3.9E-28 8.5E-33 265.3 16.2 233 547-799 85-318 (386)
37 COG1223 Predicted ATPase (AAA+ 99.9 9E-28 2E-32 249.0 14.5 238 550-823 117-355 (368)
38 PRK03992 proteasome-activating 99.9 2.6E-27 5.7E-32 274.7 20.2 250 550-827 127-376 (389)
39 KOG0726 26S proteasome regulat 99.9 2.6E-28 5.7E-33 256.1 8.5 248 548-823 179-426 (440)
40 COG1223 Predicted ATPase (AAA+ 99.9 4.5E-28 9.7E-33 251.3 9.3 165 840-1050 117-289 (368)
41 PTZ00361 26 proteosome regulat 99.9 1.5E-26 3.3E-31 268.5 18.9 246 550-823 179-424 (438)
42 COG0464 SpoVK ATPases of the A 99.9 2.9E-26 6.2E-31 275.5 20.9 248 550-826 238-486 (494)
43 TIGR01243 CDC48 AAA family ATP 99.9 3.1E-26 6.7E-31 286.5 21.3 259 550-827 449-714 (733)
44 KOG0735 AAA+-type ATPase [Post 99.9 2.8E-26 6.2E-31 264.4 18.9 228 551-798 664-891 (952)
45 KOG0651 26S proteasome regulat 99.9 7.6E-27 1.7E-31 248.1 12.5 173 840-1051 128-309 (388)
46 TIGR03689 pup_AAA proteasome A 99.9 8.8E-27 1.9E-31 273.7 13.2 169 839-1049 177-369 (512)
47 PTZ00454 26S protease regulato 99.9 3.2E-26 7E-31 264.4 15.4 169 839-1049 140-320 (398)
48 TIGR01241 FtsH_fam ATP-depende 99.9 7.5E-26 1.6E-30 271.2 18.7 247 550-825 51-297 (495)
49 KOG0729 26S proteasome regulat 99.9 2.7E-26 5.9E-31 238.2 12.7 247 548-824 171-419 (435)
50 COG0465 HflB ATP-dependent Zn 99.9 2.3E-26 5E-31 270.6 12.6 168 839-1049 145-324 (596)
51 COG0465 HflB ATP-dependent Zn 99.9 8.8E-26 1.9E-30 265.7 17.2 248 548-824 144-391 (596)
52 CHL00176 ftsH cell division pr 99.9 2.8E-25 6E-30 269.3 19.9 245 550-823 179-423 (638)
53 TIGR03345 VI_ClpV1 type VI sec 99.9 1.5E-24 3.3E-29 272.0 26.3 358 552-951 185-682 (852)
54 KOG0737 AAA+-type ATPase [Post 99.9 4.2E-26 9E-31 249.5 8.9 170 838-1049 86-265 (386)
55 PRK03992 proteasome-activating 99.9 2.6E-25 5.6E-30 258.1 16.0 170 838-1049 125-306 (389)
56 TIGR01242 26Sp45 26S proteasom 99.9 7.6E-25 1.6E-29 253.0 19.7 245 550-822 118-362 (364)
57 CHL00095 clpC Clp protease ATP 99.9 4.1E-24 8.9E-29 269.5 27.3 357 553-951 178-625 (821)
58 TIGR03689 pup_AAA proteasome A 99.9 1.6E-24 3.4E-29 254.8 21.5 195 550-756 178-380 (512)
59 PLN00020 ribulose bisphosphate 99.9 2.8E-25 6E-30 245.5 12.9 161 842-1048 113-301 (413)
60 COG0542 clpA ATP-binding subun 99.9 2.7E-24 5.8E-29 258.8 22.5 359 551-951 167-607 (786)
61 CHL00206 ycf2 Ycf2; Provisiona 99.9 7.7E-25 1.7E-29 276.1 17.6 214 581-825 1621-1879(2281)
62 PTZ00361 26 proteosome regulat 99.9 2.6E-25 5.6E-30 258.3 12.4 172 839-1049 178-358 (438)
63 KOG0732 AAA+-type ATPase conta 99.9 5.9E-25 1.3E-29 268.1 11.5 168 839-1048 260-441 (1080)
64 KOG0740 AAA+-type ATPase [Post 99.9 4.1E-24 8.8E-29 242.5 15.7 259 548-826 147-407 (428)
65 TIGR01241 FtsH_fam ATP-depende 99.9 2.2E-24 4.7E-29 258.6 13.6 168 839-1049 50-229 (495)
66 TIGR03346 chaperone_ClpB ATP-d 99.9 4.8E-23 1E-27 260.5 25.7 201 553-789 172-393 (852)
67 KOG0741 AAA+-type ATPase [Post 99.9 1.8E-24 3.9E-29 242.6 9.4 162 846-1049 223-405 (744)
68 PRK10733 hflB ATP-dependent me 99.9 4.7E-23 1E-27 252.8 20.3 248 548-824 146-393 (644)
69 KOG0651 26S proteasome regulat 99.9 5.9E-24 1.3E-28 226.2 9.5 245 550-822 128-372 (388)
70 PLN00020 ribulose bisphosphate 99.9 1.6E-22 3.4E-27 223.8 20.3 198 585-795 143-354 (413)
71 PRK10865 protein disaggregatio 99.9 3.6E-22 7.7E-27 251.6 25.4 188 553-776 177-380 (857)
72 TIGR01242 26Sp45 26S proteasom 99.9 6.2E-23 1.3E-27 237.1 14.6 172 839-1049 117-297 (364)
73 KOG0740 AAA+-type ATPase [Post 99.9 2.7E-23 5.9E-28 235.8 11.2 168 840-1050 149-325 (428)
74 CHL00176 ftsH cell division pr 99.9 8.3E-23 1.8E-27 247.9 14.2 167 840-1049 179-357 (638)
75 CHL00206 ycf2 Ycf2; Provisiona 99.9 6.8E-22 1.5E-26 249.9 13.5 132 868-1048 1620-1807(2281)
76 PRK10733 hflB ATP-dependent me 99.8 3.1E-21 6.7E-26 236.8 13.4 166 840-1048 148-325 (644)
77 TIGR02881 spore_V_K stage V sp 99.8 1.1E-18 2.4E-23 192.7 17.4 223 552-798 4-244 (261)
78 PF00004 AAA: ATPase family as 99.8 1.2E-18 2.6E-23 171.0 12.3 121 881-1044 1-132 (132)
79 CHL00181 cbbX CbbX; Provisiona 99.8 1E-17 2.2E-22 186.6 17.4 222 555-799 24-261 (287)
80 TIGR02880 cbbX_cfxQ probable R 99.8 1.7E-17 3.6E-22 184.9 17.6 221 555-798 23-259 (284)
81 PF09263 PEX-2N: Peroxisome bi 99.7 3.3E-18 7.2E-23 147.0 7.7 80 3-90 4-87 (87)
82 PF00004 AAA: ATPase family as 99.7 8E-17 1.7E-21 158.0 13.9 130 593-739 1-131 (132)
83 KOG0744 AAA+-type ATPase [Post 99.7 1.3E-17 2.8E-22 178.8 6.5 167 841-1049 139-331 (423)
84 KOG0743 AAA+-type ATPase [Post 99.7 2.7E-16 5.9E-21 177.5 13.3 162 841-1048 198-373 (457)
85 CHL00181 cbbX CbbX; Provisiona 99.7 2.2E-16 4.8E-21 175.9 11.2 156 843-1048 22-199 (287)
86 PF05496 RuvB_N: Holliday junc 99.7 2.7E-15 5.9E-20 157.3 17.9 195 552-788 22-225 (233)
87 KOG0743 AAA+-type ATPase [Post 99.6 2.3E-15 5E-20 170.1 16.4 208 552-783 199-411 (457)
88 KOG0742 AAA+-type ATPase [Post 99.6 5.7E-15 1.2E-19 162.3 18.3 184 589-793 383-593 (630)
89 TIGR02880 cbbX_cfxQ probable R 99.6 7.6E-16 1.6E-20 171.7 11.6 153 845-1047 23-197 (284)
90 KOG0744 AAA+-type ATPase [Post 99.6 1.3E-15 2.7E-20 163.7 11.7 213 588-822 175-413 (423)
91 TIGR02881 spore_V_K stage V sp 99.6 3.3E-15 7.1E-20 165.1 11.1 106 842-951 4-119 (261)
92 PRK00080 ruvB Holliday junctio 99.6 5.6E-14 1.2E-18 160.4 20.8 200 552-793 23-231 (328)
93 TIGR00635 ruvB Holliday juncti 99.6 1.1E-13 2.4E-18 156.4 20.2 198 552-791 2-208 (305)
94 COG2255 RuvB Holliday junction 99.6 1E-13 2.2E-18 147.7 18.3 199 553-793 25-232 (332)
95 KOG1051 Chaperone HSP104 and r 99.6 2E-13 4.3E-18 167.5 22.5 144 591-755 209-364 (898)
96 TIGR00763 lon ATP-dependent pr 99.5 2E-13 4.4E-18 171.9 19.7 213 555-797 321-559 (775)
97 PRK14956 DNA polymerase III su 99.5 1E-12 2.2E-17 153.3 19.6 194 552-789 16-227 (484)
98 PRK07003 DNA polymerase III su 99.5 2E-12 4.2E-17 155.8 20.7 195 552-790 14-226 (830)
99 KOG0989 Replication factor C, 99.4 1.7E-12 3.6E-17 139.9 16.3 192 551-787 33-233 (346)
100 PRK06893 DNA replication initi 99.4 2.2E-12 4.9E-17 139.7 16.2 166 591-789 40-208 (229)
101 KOG0742 AAA+-type ATPase [Post 99.4 2.7E-13 5.9E-18 149.3 8.7 159 841-1049 352-519 (630)
102 PRK12323 DNA polymerase III su 99.4 2.7E-12 5.9E-17 152.9 17.7 194 552-789 14-230 (700)
103 PF05496 RuvB_N: Holliday junc 99.4 6.2E-13 1.3E-17 139.7 10.5 115 840-977 20-134 (233)
104 TIGR02902 spore_lonB ATP-depen 99.4 3.7E-12 8E-17 153.7 18.8 229 551-821 62-330 (531)
105 PRK14960 DNA polymerase III su 99.4 5.6E-12 1.2E-16 150.6 19.8 194 552-789 13-224 (702)
106 PRK00149 dnaA chromosomal repl 99.4 3.2E-12 6.9E-17 152.1 17.9 195 591-822 149-348 (450)
107 COG0466 Lon ATP-dependent Lon 99.4 3.2E-12 7E-17 150.8 16.9 190 555-773 324-537 (782)
108 PRK14949 DNA polymerase III su 99.4 9.3E-12 2E-16 152.7 21.0 194 552-789 14-225 (944)
109 PTZ00112 origin recognition co 99.4 8.2E-12 1.8E-16 150.4 19.7 223 554-823 755-1006(1164)
110 PRK14088 dnaA chromosomal repl 99.4 5.6E-12 1.2E-16 148.9 17.7 276 591-933 131-411 (440)
111 TIGR02928 orc1/cdc6 family rep 99.4 1.5E-11 3.2E-16 142.7 20.7 226 555-823 16-274 (365)
112 COG2256 MGS1 ATPase related to 99.4 6.6E-13 1.4E-17 147.9 8.8 122 840-988 20-148 (436)
113 PRK14962 DNA polymerase III su 99.4 1.3E-11 2.9E-16 146.2 20.2 194 552-789 12-223 (472)
114 PRK14964 DNA polymerase III su 99.4 1.2E-11 2.6E-16 145.9 19.6 195 552-790 11-223 (491)
115 PRK14086 dnaA chromosomal repl 99.4 1E-11 2.2E-16 148.6 19.0 176 592-792 316-496 (617)
116 PRK14958 DNA polymerase III su 99.4 1.1E-11 2.4E-16 148.3 19.4 195 552-790 14-226 (509)
117 PRK07994 DNA polymerase III su 99.4 1.6E-11 3.5E-16 148.9 20.8 194 552-789 14-225 (647)
118 PRK06645 DNA polymerase III su 99.4 2E-11 4.4E-16 145.1 21.1 195 552-790 19-235 (507)
119 TIGR00362 DnaA chromosomal rep 99.4 5.8E-12 1.3E-16 148.1 15.9 177 591-792 137-318 (405)
120 PRK08691 DNA polymerase III su 99.4 1.8E-11 3.8E-16 147.7 19.7 195 552-790 14-226 (709)
121 COG2256 MGS1 ATPase related to 99.4 1.2E-11 2.7E-16 137.9 16.6 144 591-776 49-205 (436)
122 PRK14961 DNA polymerase III su 99.4 2.7E-11 5.8E-16 140.2 20.0 194 552-789 14-225 (363)
123 PRK00411 cdc6 cell division co 99.4 2.8E-11 6.1E-16 141.8 20.5 226 554-823 30-282 (394)
124 TIGR02639 ClpA ATP-dependent C 99.3 2.9E-12 6.2E-17 160.8 12.2 101 841-954 179-291 (731)
125 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.7E-11 5.8E-16 130.7 17.7 166 590-791 38-208 (226)
126 PLN03025 replication factor C 99.3 3.1E-11 6.7E-16 137.4 18.7 165 591-786 35-202 (319)
127 PRK08084 DNA replication initi 99.3 2.3E-11 4.9E-16 132.4 16.8 166 591-791 46-216 (235)
128 PRK14963 DNA polymerase III su 99.3 6E-11 1.3E-15 141.8 20.9 194 552-789 12-222 (504)
129 KOG2004 Mitochondrial ATP-depe 99.3 4.1E-11 8.9E-16 140.6 17.6 211 555-794 412-651 (906)
130 PRK10787 DNA-binding ATP-depen 99.3 5E-11 1.1E-15 149.2 19.1 212 555-797 323-560 (784)
131 PRK05563 DNA polymerase III su 99.3 7.7E-11 1.7E-15 142.9 20.1 194 552-789 14-225 (559)
132 PRK14957 DNA polymerase III su 99.3 9.8E-11 2.1E-15 140.2 20.5 194 552-789 14-225 (546)
133 PRK04195 replication factor C 99.3 6.3E-11 1.4E-15 142.2 19.0 180 552-775 12-194 (482)
134 PHA02544 44 clamp loader, smal 99.3 1.2E-10 2.5E-15 132.5 20.1 175 552-775 19-201 (316)
135 PRK14952 DNA polymerase III su 99.3 1.1E-10 2.4E-15 140.9 20.7 194 552-789 11-224 (584)
136 PRK05896 DNA polymerase III su 99.3 1E-10 2.2E-15 140.0 20.1 193 552-788 14-224 (605)
137 PF05673 DUF815: Protein of un 99.3 1.2E-10 2.6E-15 124.1 18.5 195 551-787 24-244 (249)
138 PRK12422 chromosomal replicati 99.3 3.5E-11 7.5E-16 141.9 15.9 196 591-823 142-343 (445)
139 PRK07764 DNA polymerase III su 99.3 9.1E-11 2E-15 146.7 20.3 194 552-789 13-226 (824)
140 PRK14951 DNA polymerase III su 99.3 8.1E-11 1.8E-15 142.6 19.2 195 552-790 14-231 (618)
141 PRK12402 replication factor C 99.3 1.2E-10 2.5E-15 133.5 19.8 167 591-786 37-228 (337)
142 PRK13342 recombination factor 99.3 8.2E-11 1.8E-15 138.5 18.8 160 591-789 37-201 (413)
143 PRK05342 clpX ATP-dependent pr 99.3 1.7E-10 3.8E-15 134.4 21.1 199 589-796 107-382 (412)
144 TIGR00763 lon ATP-dependent pr 99.3 7.5E-12 1.6E-16 157.9 10.5 101 844-952 320-429 (775)
145 PRK07133 DNA polymerase III su 99.3 1.1E-10 2.5E-15 142.2 19.7 194 552-789 16-224 (725)
146 PRK08903 DnaA regulatory inact 99.3 8.4E-11 1.8E-15 127.2 16.7 160 589-789 41-204 (227)
147 PF00308 Bac_DnaA: Bacterial d 99.3 8.1E-11 1.7E-15 126.6 16.1 174 591-790 35-214 (219)
148 PRK11034 clpA ATP-dependent Cl 99.3 1.1E-10 2.4E-15 145.1 19.2 214 555-797 459-720 (758)
149 PRK14969 DNA polymerase III su 99.3 1.1E-10 2.3E-15 140.8 18.6 195 552-790 14-226 (527)
150 PRK08451 DNA polymerase III su 99.3 2E-10 4.3E-15 136.9 20.6 195 552-790 12-224 (535)
151 TIGR02397 dnaX_nterm DNA polym 99.3 1.5E-10 3.3E-15 133.6 19.2 190 552-789 12-223 (355)
152 PRK07940 DNA polymerase III su 99.2 2.1E-10 4.5E-15 133.1 19.3 195 552-784 3-214 (394)
153 PRK10865 protein disaggregatio 99.2 2.8E-11 6.2E-16 153.4 13.1 101 841-954 175-288 (857)
154 PRK14965 DNA polymerase III su 99.2 1.7E-10 3.6E-15 140.7 19.2 194 552-789 14-225 (576)
155 PRK08727 hypothetical protein; 99.2 1.4E-10 3E-15 126.1 16.6 162 591-789 42-209 (233)
156 PRK14970 DNA polymerase III su 99.2 3.1E-10 6.7E-15 131.8 20.3 194 552-789 15-214 (367)
157 PRK14959 DNA polymerase III su 99.2 2.2E-10 4.8E-15 137.9 19.4 192 552-788 14-224 (624)
158 PRK05642 DNA replication initi 99.2 1.8E-10 4E-15 125.2 17.1 166 591-792 46-216 (234)
159 PRK09111 DNA polymerase III su 99.2 3.2E-10 7E-15 137.7 20.5 194 552-789 22-238 (598)
160 CHL00095 clpC Clp protease ATP 99.2 3.1E-11 6.7E-16 153.2 12.2 101 841-954 176-288 (821)
161 PRK06647 DNA polymerase III su 99.2 3.5E-10 7.6E-15 136.8 19.7 194 552-789 14-225 (563)
162 PRK14953 DNA polymerase III su 99.2 4.1E-10 8.8E-15 134.2 19.8 194 552-789 14-225 (486)
163 PRK13341 recombination factor 99.2 2.1E-10 4.6E-15 141.9 17.8 161 591-790 53-223 (725)
164 PRK06305 DNA polymerase III su 99.2 6.7E-10 1.5E-14 131.6 20.6 194 552-789 15-227 (451)
165 PRK05342 clpX ATP-dependent pr 99.2 4.4E-11 9.6E-16 139.3 10.2 110 845-954 72-190 (412)
166 TIGR00390 hslU ATP-dependent p 99.2 8.2E-11 1.8E-15 134.4 11.6 89 845-933 13-104 (441)
167 PRK00440 rfc replication facto 99.2 8E-10 1.7E-14 125.5 19.2 191 552-788 15-207 (319)
168 TIGR00382 clpX endopeptidase C 99.2 4.7E-10 1E-14 130.1 17.5 198 590-796 116-388 (413)
169 PRK05201 hslU ATP-dependent pr 99.2 9E-11 2E-15 134.1 11.0 89 845-933 16-107 (443)
170 COG1474 CDC6 Cdc6-related prot 99.2 1.1E-09 2.3E-14 126.0 19.2 220 556-822 19-264 (366)
171 PRK14087 dnaA chromosomal repl 99.2 3.9E-10 8.4E-15 133.6 16.0 196 591-822 142-347 (450)
172 TIGR00382 clpX endopeptidase C 99.2 1E-10 2.2E-15 135.6 10.8 109 844-954 77-198 (413)
173 PRK06620 hypothetical protein; 99.2 5.5E-10 1.2E-14 119.6 15.3 146 591-789 45-194 (214)
174 TIGR03345 VI_ClpV1 type VI sec 99.1 1.4E-10 3.1E-15 146.7 12.4 101 841-954 184-297 (852)
175 TIGR00390 hslU ATP-dependent p 99.1 6.2E-10 1.3E-14 127.3 16.1 136 655-795 247-407 (441)
176 COG2812 DnaX DNA polymerase II 99.1 2.6E-10 5.6E-15 134.3 13.4 195 553-791 15-227 (515)
177 PRK05201 hslU ATP-dependent pr 99.1 8E-10 1.7E-14 126.5 16.7 134 655-793 249-407 (443)
178 PRK14948 DNA polymerase III su 99.1 1.3E-09 2.7E-14 133.4 19.7 192 552-787 14-225 (620)
179 COG0466 Lon ATP-dependent Lon 99.1 1.8E-10 4E-15 136.3 11.2 116 843-966 322-446 (782)
180 COG2255 RuvB Holliday junction 99.1 1.2E-10 2.6E-15 124.5 8.5 119 840-981 22-140 (332)
181 TIGR02903 spore_lon_C ATP-depe 99.1 1.7E-09 3.8E-14 132.6 19.5 233 552-822 152-429 (615)
182 PRK14950 DNA polymerase III su 99.1 2.8E-09 6.1E-14 130.6 20.6 193 552-788 14-225 (585)
183 PRK14955 DNA polymerase III su 99.1 1.9E-09 4E-14 126.4 18.1 194 552-789 14-233 (397)
184 COG3829 RocR Transcriptional r 99.1 4.1E-11 8.8E-16 138.7 4.0 153 840-1051 241-416 (560)
185 KOG2028 ATPase related to the 99.1 1.6E-10 3.5E-15 126.3 8.1 95 880-988 164-266 (554)
186 PRK14954 DNA polymerase III su 99.1 2.8E-09 6.1E-14 129.7 19.6 194 552-789 14-233 (620)
187 TIGR02640 gas_vesic_GvpN gas v 99.1 1E-09 2.2E-14 121.4 14.4 156 561-754 5-198 (262)
188 PRK09087 hypothetical protein; 99.1 8.3E-10 1.8E-14 119.2 13.2 154 591-792 45-203 (226)
189 KOG2004 Mitochondrial ATP-depe 99.1 4E-10 8.7E-15 132.5 10.7 102 842-951 409-519 (906)
190 COG0593 DnaA ATPase involved i 99.1 1.9E-09 4.2E-14 123.6 15.9 195 591-823 114-313 (408)
191 TIGR03346 chaperone_ClpB ATP-d 99.1 5.7E-09 1.2E-13 133.1 21.7 218 554-797 565-830 (852)
192 PF00158 Sigma54_activat: Sigm 99.1 4.2E-11 9.1E-16 123.2 1.8 145 846-1049 1-167 (168)
193 TIGR01650 PD_CobS cobaltochela 99.1 1.4E-09 3.1E-14 121.6 14.2 141 590-754 64-233 (327)
194 PRK14971 DNA polymerase III su 99.0 6.4E-09 1.4E-13 127.3 20.2 194 552-789 15-227 (614)
195 COG3604 FhlA Transcriptional r 99.0 1.4E-10 3.1E-15 132.4 4.1 149 841-1051 220-393 (550)
196 PRK10787 DNA-binding ATP-depen 99.0 7.6E-10 1.6E-14 138.7 10.8 101 844-952 322-431 (784)
197 COG2607 Predicted ATPase (AAA+ 99.0 1.5E-08 3.2E-13 106.2 18.2 195 551-787 57-276 (287)
198 PRK00080 ruvB Holliday junctio 99.0 1E-09 2.2E-14 125.5 10.5 96 840-951 21-116 (328)
199 KOG1969 DNA replication checkp 99.0 8.8E-09 1.9E-13 121.8 18.2 177 586-791 322-514 (877)
200 TIGR00635 ruvB Holliday juncti 99.0 1.2E-09 2.6E-14 123.5 10.5 94 842-951 2-95 (305)
201 TIGR03015 pepcterm_ATPase puta 99.0 2.8E-08 6E-13 110.2 20.6 195 591-822 44-265 (269)
202 PF07724 AAA_2: AAA domain (Cd 99.0 5.7E-10 1.2E-14 115.2 6.6 71 877-952 2-83 (171)
203 COG0542 clpA ATP-binding subun 99.0 7.7E-09 1.7E-13 126.2 17.0 218 554-797 491-759 (786)
204 TIGR00678 holB DNA polymerase 99.0 7.5E-09 1.6E-13 108.7 14.8 153 590-776 14-184 (188)
205 COG1224 TIP49 DNA helicase TIP 99.0 1.3E-08 2.9E-13 111.7 16.1 131 655-823 291-432 (450)
206 PRK14956 DNA polymerase III su 99.0 2E-09 4.3E-14 126.0 10.3 93 840-950 14-134 (484)
207 cd00009 AAA The AAA+ (ATPases 98.9 1.1E-08 2.5E-13 100.7 14.1 127 590-739 19-150 (151)
208 PRK13342 recombination factor 98.9 3.6E-09 7.8E-14 124.7 11.8 91 840-950 8-105 (413)
209 TIGR02974 phageshock_pspF psp 98.9 1.3E-08 2.9E-13 116.0 15.9 200 557-792 2-233 (329)
210 COG5271 MDN1 AAA ATPase contai 98.9 1.3E-08 2.8E-13 126.2 16.3 137 590-753 1543-1702(4600)
211 PRK12323 DNA polymerase III su 98.9 2.2E-09 4.7E-14 128.5 9.0 94 839-950 11-137 (700)
212 PRK11608 pspF phage shock prot 98.9 3E-08 6.5E-13 113.2 17.3 200 553-791 5-239 (326)
213 KOG0989 Replication factor C, 98.9 1.2E-09 2.6E-14 118.2 5.4 122 839-980 31-168 (346)
214 PRK07940 DNA polymerase III su 98.9 5.2E-09 1.1E-13 121.5 10.7 146 841-1049 2-180 (394)
215 cd00009 AAA The AAA+ (ATPases 98.9 1.1E-08 2.5E-13 100.7 11.7 73 877-949 18-96 (151)
216 PRK07003 DNA polymerase III su 98.9 4.6E-09 1E-13 127.2 10.2 94 839-950 11-132 (830)
217 COG1219 ClpX ATP-dependent pro 98.9 4.1E-09 9E-14 114.1 8.8 106 846-953 63-178 (408)
218 PRK14962 DNA polymerase III su 98.9 7.9E-09 1.7E-13 122.8 11.9 93 840-950 10-130 (472)
219 TIGR01650 PD_CobS cobaltochela 98.9 1.3E-09 2.9E-14 121.9 4.7 74 877-951 63-148 (327)
220 TIGR02640 gas_vesic_GvpN gas v 98.9 5.5E-09 1.2E-13 115.6 9.3 73 878-951 21-119 (262)
221 COG2204 AtoC Response regulato 98.9 9.7E-10 2.1E-14 127.8 3.5 151 842-1051 139-311 (464)
222 KOG0991 Replication factor C, 98.9 2E-08 4.4E-13 104.3 12.7 156 591-776 49-207 (333)
223 KOG2028 ATPase related to the 98.9 3.5E-08 7.6E-13 108.3 14.6 184 592-822 164-367 (554)
224 COG1219 ClpX ATP-dependent pro 98.9 7.4E-08 1.6E-12 104.6 16.8 198 591-795 98-370 (408)
225 PRK04132 replication factor C 98.8 3.7E-08 8E-13 122.8 16.3 167 591-788 565-735 (846)
226 PRK13407 bchI magnesium chelat 98.8 2.3E-08 4.9E-13 113.6 13.3 81 656-753 129-215 (334)
227 PRK04195 replication factor C 98.8 1E-08 2.3E-13 123.2 11.0 97 840-951 10-112 (482)
228 PRK13531 regulatory ATPase Rav 98.8 3.6E-08 7.8E-13 115.2 15.0 142 588-752 37-192 (498)
229 COG2204 AtoC Response regulato 98.8 2.8E-08 6E-13 115.8 13.7 209 552-792 139-374 (464)
230 TIGR01817 nifA Nif-specific re 98.8 7.4E-08 1.6E-12 117.4 17.9 205 551-791 193-427 (534)
231 PRK14960 DNA polymerase III su 98.8 1E-08 2.2E-13 123.1 10.0 93 840-950 11-131 (702)
232 KOG0745 Putative ATP-dependent 98.8 8.9E-08 1.9E-12 107.6 16.5 196 591-795 227-511 (564)
233 smart00382 AAA ATPases associa 98.8 1.4E-08 3.1E-13 99.0 9.4 75 878-952 2-93 (148)
234 COG1221 PspF Transcriptional r 98.8 3.2E-08 6.9E-13 113.4 13.3 213 550-794 74-311 (403)
235 PHA02544 44 clamp loader, smal 98.8 1.8E-08 3.8E-13 114.7 10.8 96 839-949 16-112 (316)
236 TIGR02030 BchI-ChlI magnesium 98.8 9E-08 1.9E-12 109.0 16.4 81 656-753 132-218 (337)
237 PRK14949 DNA polymerase III su 98.8 1.4E-08 3E-13 125.3 10.4 93 840-950 12-132 (944)
238 PRK09112 DNA polymerase III su 98.8 2.1E-07 4.5E-12 106.9 19.1 189 552-785 21-241 (351)
239 PRK10820 DNA-binding transcrip 98.8 1E-07 2.2E-12 115.4 17.5 205 551-791 201-436 (520)
240 PRK14961 DNA polymerase III su 98.8 3.1E-08 6.8E-13 114.8 12.4 93 840-950 12-132 (363)
241 COG3604 FhlA Transcriptional r 98.8 6.4E-08 1.4E-12 111.1 14.3 210 550-792 219-456 (550)
242 PRK15429 formate hydrogenlyase 98.8 1.4E-07 3.1E-12 118.3 18.7 204 550-791 372-608 (686)
243 COG0714 MoxR-like ATPases [Gen 98.8 1.4E-08 3.1E-13 116.1 8.8 140 590-752 43-201 (329)
244 PF07728 AAA_5: AAA domain (dy 98.8 8.9E-09 1.9E-13 102.5 6.1 115 592-732 1-139 (139)
245 COG3829 RocR Transcriptional r 98.8 8.7E-08 1.9E-12 111.5 15.0 207 550-790 241-477 (560)
246 PRK07994 DNA polymerase III su 98.8 2.2E-08 4.8E-13 121.9 10.6 93 840-950 12-132 (647)
247 KOG0745 Putative ATP-dependent 98.8 2E-08 4.4E-13 112.6 9.2 75 878-952 226-306 (564)
248 PRK14958 DNA polymerase III su 98.8 2.2E-08 4.8E-13 120.2 10.1 94 840-951 12-133 (509)
249 smart00382 AAA ATPases associa 98.8 8.8E-08 1.9E-12 93.4 12.7 76 590-668 2-91 (148)
250 PRK11388 DNA-binding transcrip 98.7 1.4E-07 3E-12 117.6 17.3 199 552-790 323-552 (638)
251 PRK05022 anaerobic nitric oxid 98.7 1.6E-07 3.5E-12 113.6 17.2 204 553-793 186-421 (509)
252 PRK08691 DNA polymerase III su 98.7 2.3E-08 4.9E-13 121.3 9.5 94 839-950 11-132 (709)
253 PRK05564 DNA polymerase III su 98.7 2.8E-07 6.1E-12 104.8 18.0 180 553-777 3-184 (313)
254 CHL00081 chlI Mg-protoporyphyr 98.7 1.6E-07 3.4E-12 107.0 15.8 168 551-753 14-231 (350)
255 PF07724 AAA_2: AAA domain (Cd 98.7 9E-08 2E-12 98.9 12.5 123 590-721 3-132 (171)
256 PRK07471 DNA polymerase III su 98.7 3.6E-07 7.9E-12 105.4 18.8 180 552-776 17-231 (365)
257 PRK15424 propionate catabolism 98.7 6.3E-09 1.4E-13 124.9 4.3 97 841-951 216-336 (538)
258 PRK06645 DNA polymerase III su 98.7 5.1E-08 1.1E-12 116.4 11.9 94 839-950 16-141 (507)
259 TIGR02329 propionate_PrpR prop 98.7 1.3E-07 2.8E-12 113.9 14.8 205 551-791 209-449 (526)
260 PF05673 DUF815: Protein of un 98.7 9.2E-08 2E-12 102.3 11.9 90 840-947 23-116 (249)
261 PHA02244 ATPase-like protein 98.7 1.4E-07 3.1E-12 106.8 13.4 73 877-951 118-194 (383)
262 PF01078 Mg_chelatase: Magnesi 98.7 1.3E-08 2.9E-13 106.6 4.8 46 842-902 1-46 (206)
263 PLN03025 replication factor C 98.7 2.8E-08 6.1E-13 113.2 7.9 117 839-978 8-136 (319)
264 PRK05563 DNA polymerase III su 98.7 6.8E-08 1.5E-12 117.5 11.7 93 840-950 12-132 (559)
265 PRK05707 DNA polymerase III su 98.7 3.6E-07 7.9E-12 104.0 16.8 157 590-777 22-197 (328)
266 PRK15424 propionate catabolism 98.7 2.3E-07 5.1E-12 111.6 16.0 206 551-790 216-463 (538)
267 PRK14964 DNA polymerase III su 98.7 5.8E-08 1.3E-12 115.1 10.3 94 839-950 8-129 (491)
268 PRK14963 DNA polymerase III su 98.7 1.2E-07 2.5E-12 113.8 12.5 92 840-949 10-128 (504)
269 PRK14952 DNA polymerase III su 98.7 9.4E-08 2E-12 115.8 11.8 93 840-950 9-131 (584)
270 PF00158 Sigma54_activat: Sigm 98.7 3E-07 6.5E-12 94.8 13.5 129 556-718 1-143 (168)
271 COG0714 MoxR-like ATPases [Gen 98.7 5E-08 1.1E-12 111.7 8.5 71 877-951 42-126 (329)
272 TIGR02903 spore_lon_C ATP-depe 98.6 1.6E-07 3.5E-12 115.5 13.4 62 840-914 150-221 (615)
273 PRK14957 DNA polymerase III su 98.6 1.1E-07 2.4E-12 114.2 11.6 93 840-950 12-132 (546)
274 PF07726 AAA_3: ATPase family 98.6 6.5E-09 1.4E-13 100.4 0.8 114 592-733 1-130 (131)
275 PHA02244 ATPase-like protein 98.6 2.1E-07 4.6E-12 105.4 13.0 126 591-743 120-263 (383)
276 PRK12402 replication factor C 98.6 1.9E-07 4E-12 107.1 13.0 98 840-950 11-138 (337)
277 KOG2035 Replication factor C, 98.6 6.2E-07 1.3E-11 95.9 15.4 157 591-778 35-223 (351)
278 PF06068 TIP49: TIP49 C-termin 98.6 2.6E-07 5.6E-12 103.7 13.2 95 655-777 278-384 (398)
279 TIGR02329 propionate_PrpR prop 98.6 1.4E-08 3.1E-13 122.0 3.3 97 841-951 209-321 (526)
280 PRK14969 DNA polymerase III su 98.6 1.4E-07 3.1E-12 113.9 11.8 93 840-950 12-132 (527)
281 smart00350 MCM minichromosome 98.6 2.5E-07 5.4E-12 111.8 13.9 144 588-755 234-401 (509)
282 KOG0991 Replication factor C, 98.6 2.5E-08 5.5E-13 103.6 4.6 121 840-980 23-152 (333)
283 KOG1514 Origin recognition com 98.6 1E-06 2.2E-11 104.8 18.3 235 555-825 397-657 (767)
284 PRK07764 DNA polymerase III su 98.6 9.7E-08 2.1E-12 119.9 10.5 93 840-950 11-133 (824)
285 PRK14965 DNA polymerase III su 98.6 1.3E-07 2.8E-12 115.6 11.3 93 840-950 12-132 (576)
286 TIGR02974 phageshock_pspF psp 98.6 2.1E-08 4.6E-13 114.4 4.1 91 847-951 2-107 (329)
287 PRK14951 DNA polymerase III su 98.6 7.8E-08 1.7E-12 117.0 9.2 93 840-950 12-137 (618)
288 PRK14959 DNA polymerase III su 98.6 1E-07 2.3E-12 115.1 10.2 93 840-950 12-132 (624)
289 PF12775 AAA_7: P-loop contain 98.6 7E-08 1.5E-12 107.1 7.9 150 590-756 33-195 (272)
290 TIGR02031 BchD-ChlD magnesium 98.6 4E-07 8.6E-12 111.5 14.5 144 590-754 16-174 (589)
291 PF05621 TniB: Bacterial TniB 98.6 1.8E-06 3.8E-11 95.4 18.0 204 562-795 41-272 (302)
292 PRK11331 5-methylcytosine-spec 98.6 4.8E-07 1E-11 105.1 14.3 136 591-744 195-362 (459)
293 TIGR02442 Cob-chelat-sub cobal 98.6 6.1E-07 1.3E-11 111.1 16.0 146 591-753 26-213 (633)
294 PRK13341 recombination factor 98.6 1.2E-07 2.7E-12 117.6 9.3 117 840-983 24-148 (725)
295 PRK14948 DNA polymerase III su 98.6 2.9E-07 6.3E-12 112.9 12.3 93 840-950 12-134 (620)
296 PRK05022 anaerobic nitric oxid 98.6 5.6E-08 1.2E-12 117.6 6.1 150 843-1051 186-357 (509)
297 PRK07133 DNA polymerase III su 98.6 2.5E-07 5.5E-12 113.4 11.5 100 839-950 13-131 (725)
298 PRK05896 DNA polymerase III su 98.6 1.6E-07 3.5E-12 112.9 9.6 93 840-950 12-132 (605)
299 PRK07399 DNA polymerase III su 98.6 1.7E-06 3.6E-11 98.1 17.2 187 553-785 3-222 (314)
300 TIGR01817 nifA Nif-specific re 98.6 4.8E-08 1E-12 119.1 5.1 97 841-951 193-304 (534)
301 TIGR02902 spore_lonB ATP-depen 98.6 1.1E-07 2.4E-12 115.2 8.1 111 840-973 61-204 (531)
302 PRK11388 DNA-binding transcrip 98.5 5.1E-08 1.1E-12 121.4 5.0 152 841-1051 322-492 (638)
303 PRK14970 DNA polymerase III su 98.5 2.4E-07 5.3E-12 107.7 10.3 93 840-950 13-121 (367)
304 TIGR02397 dnaX_nterm DNA polym 98.5 4.2E-07 9.1E-12 105.1 12.1 93 840-950 10-130 (355)
305 TIGR00602 rad24 checkpoint pro 98.5 1.5E-06 3.3E-11 106.1 17.3 199 553-787 83-323 (637)
306 COG0470 HolB ATPase involved i 98.5 7.6E-07 1.6E-11 101.3 14.0 130 592-750 26-177 (325)
307 PRK11608 pspF phage shock prot 98.5 7.2E-08 1.6E-12 110.1 5.5 95 843-951 5-114 (326)
308 PF07728 AAA_5: AAA domain (dy 98.5 1.8E-08 3.9E-13 100.3 0.1 69 880-950 1-78 (139)
309 PRK07993 DNA polymerase III su 98.5 2.9E-06 6.2E-11 97.0 17.9 176 557-778 5-199 (334)
310 TIGR02915 PEP_resp_reg putativ 98.5 1.2E-06 2.5E-11 104.7 15.2 200 555-791 140-371 (445)
311 PRK06871 DNA polymerase III su 98.5 3.5E-06 7.6E-11 95.5 18.1 175 556-776 4-196 (325)
312 PF14532 Sigma54_activ_2: Sigm 98.5 3.2E-08 6.9E-13 98.6 1.4 107 877-1051 20-135 (138)
313 PRK14955 DNA polymerase III su 98.5 5E-07 1.1E-11 106.0 11.5 53 840-904 12-64 (397)
314 PRK06305 DNA polymerase III su 98.5 3.6E-07 7.8E-12 108.5 10.2 93 840-950 13-134 (451)
315 PRK00149 dnaA chromosomal repl 98.5 3.1E-07 6.8E-12 109.6 9.7 73 879-952 149-226 (450)
316 PF13177 DNA_pol3_delta2: DNA 98.5 1.3E-06 2.7E-11 89.7 12.4 125 590-741 19-161 (162)
317 PRK15429 formate hydrogenlyase 98.5 2.1E-07 4.6E-12 116.7 7.8 97 841-951 373-484 (686)
318 PRK10820 DNA-binding transcrip 98.5 1.1E-07 2.5E-12 115.0 5.1 98 840-951 200-312 (520)
319 COG2812 DnaX DNA polymerase II 98.5 2.5E-07 5.5E-12 109.4 7.8 99 840-950 12-132 (515)
320 TIGR00362 DnaA chromosomal rep 98.5 2.6E-07 5.7E-12 108.8 7.9 72 879-952 137-214 (405)
321 COG5271 MDN1 AAA ATPase contai 98.5 1.2E-07 2.7E-12 117.9 4.8 138 591-753 889-1046(4600)
322 PRK13407 bchI magnesium chelat 98.4 1.7E-07 3.8E-12 106.4 5.3 50 840-902 4-53 (334)
323 KOG0990 Replication factor C, 98.4 6.6E-07 1.4E-11 97.8 9.3 154 592-775 64-224 (360)
324 PRK14953 DNA polymerase III su 98.4 6.3E-07 1.4E-11 107.2 9.9 93 840-950 12-132 (486)
325 TIGR02928 orc1/cdc6 family rep 98.4 1.4E-06 3E-11 101.2 12.6 99 843-950 14-142 (365)
326 PRK08058 DNA polymerase III su 98.4 2.4E-06 5.1E-11 97.8 14.2 134 590-751 28-179 (329)
327 PRK13531 regulatory ATPase Rav 98.4 5E-07 1.1E-11 105.8 8.7 72 877-951 38-121 (498)
328 PRK06647 DNA polymerase III su 98.4 7.7E-07 1.7E-11 108.1 10.7 94 839-950 11-132 (563)
329 PRK06964 DNA polymerase III su 98.4 1.9E-06 4.1E-11 98.3 13.2 137 589-752 20-202 (342)
330 PRK10923 glnG nitrogen regulat 98.4 5.4E-06 1.2E-10 99.7 17.8 199 554-791 138-370 (469)
331 PRK08769 DNA polymerase III su 98.4 7.5E-06 1.6E-10 92.6 17.7 156 590-778 26-203 (319)
332 PRK00411 cdc6 cell division co 98.4 1.7E-06 3.7E-11 101.5 12.9 98 844-950 30-151 (394)
333 PRK14954 DNA polymerase III su 98.4 1.2E-06 2.6E-11 107.1 11.6 99 840-950 12-140 (620)
334 PRK11331 5-methylcytosine-spec 98.4 1.1E-06 2.5E-11 102.1 10.6 75 878-952 194-287 (459)
335 PRK08903 DnaA regulatory inact 98.4 9.9E-07 2.1E-11 95.5 9.6 60 877-950 41-103 (227)
336 PRK09111 DNA polymerase III su 98.4 1.2E-06 2.5E-11 107.0 11.0 100 839-950 19-145 (598)
337 TIGR03420 DnaA_homol_Hda DnaA 98.4 9.7E-07 2.1E-11 95.2 9.0 88 841-951 12-104 (226)
338 COG1221 PspF Transcriptional r 98.4 2.4E-07 5.3E-12 106.3 4.0 97 840-951 74-187 (403)
339 PRK14088 dnaA chromosomal repl 98.4 6E-07 1.3E-11 106.5 7.3 73 879-952 131-209 (440)
340 KOG1942 DNA helicase, TBP-inte 98.4 6.6E-06 1.4E-10 88.5 14.2 93 655-775 296-401 (456)
341 PRK14950 DNA polymerase III su 98.3 1.1E-06 2.4E-11 108.0 9.6 93 840-950 12-133 (585)
342 COG1220 HslU ATP-dependent pro 98.3 8.1E-06 1.8E-10 89.7 14.9 113 656-773 251-381 (444)
343 PRK11361 acetoacetate metaboli 98.3 7.7E-06 1.7E-10 98.0 16.3 197 555-791 144-375 (457)
344 CHL00081 chlI Mg-protoporyphyr 98.3 5.6E-07 1.2E-11 102.5 6.0 50 840-902 13-62 (350)
345 KOG2227 Pre-initiation complex 98.3 9.7E-06 2.1E-10 92.8 15.7 194 555-784 151-368 (529)
346 PRK08699 DNA polymerase III su 98.3 6.7E-06 1.4E-10 93.6 14.6 136 590-752 21-183 (325)
347 PF13173 AAA_14: AAA domain 98.3 2.4E-06 5.1E-11 84.1 9.6 120 591-745 3-126 (128)
348 PRK08451 DNA polymerase III su 98.3 2.2E-06 4.8E-11 102.7 11.0 93 840-950 10-130 (535)
349 COG5245 DYN1 Dynein, heavy cha 98.3 1.5E-06 3.2E-11 108.4 9.3 70 876-947 1834-1904(3164)
350 PF14532 Sigma54_activ_2: Sigm 98.3 2E-06 4.4E-11 85.7 8.8 81 558-668 2-82 (138)
351 TIGR02655 circ_KaiC circadian 98.3 4.8E-06 1E-10 100.2 13.6 77 874-950 259-366 (484)
352 PF05729 NACHT: NACHT domain 98.3 5.1E-06 1.1E-10 84.4 11.9 146 592-756 2-165 (166)
353 PTZ00112 origin recognition co 98.3 2.3E-06 5E-11 104.5 10.5 100 844-951 755-883 (1164)
354 TIGR02442 Cob-chelat-sub cobal 98.3 7E-07 1.5E-11 110.6 6.5 47 843-902 3-49 (633)
355 PF01637 Arch_ATPase: Archaeal 98.3 3.7E-06 8E-11 90.4 11.1 164 590-777 20-228 (234)
356 TIGR01818 ntrC nitrogen regula 98.3 1E-05 2.2E-10 97.1 16.0 205 555-792 135-367 (463)
357 PRK06090 DNA polymerase III su 98.3 1.6E-05 3.5E-10 89.9 16.0 156 556-752 5-178 (319)
358 PRK15115 response regulator Gl 98.3 9.2E-06 2E-10 97.0 14.7 196 556-791 136-366 (444)
359 TIGR00764 lon_rel lon-related 98.2 9.5E-06 2.1E-10 99.7 14.5 101 709-822 268-390 (608)
360 KOG1051 Chaperone HSP104 and r 98.2 3.3E-05 7.1E-10 96.3 18.9 137 554-718 562-710 (898)
361 PRK06893 DNA replication initi 98.2 1.9E-06 4E-11 93.6 7.2 64 879-952 40-106 (229)
362 PRK12422 chromosomal replicati 98.2 1.6E-06 3.6E-11 102.6 7.2 72 879-951 142-216 (445)
363 KOG2680 DNA helicase TIP49, TB 98.2 1.6E-05 3.4E-10 85.9 13.7 132 655-824 288-430 (454)
364 PRK14086 dnaA chromosomal repl 98.2 1.8E-06 3.9E-11 104.1 7.2 72 880-952 316-392 (617)
365 KOG1969 DNA replication checkp 98.2 2.2E-06 4.9E-11 102.0 7.6 68 877-950 325-400 (877)
366 PRK08116 hypothetical protein; 98.2 5.4E-06 1.2E-10 92.0 9.6 72 590-666 114-189 (268)
367 TIGR00368 Mg chelatase-related 98.2 2.4E-06 5.3E-11 102.2 7.2 47 841-902 189-235 (499)
368 PF03215 Rad17: Rad17 cell cyc 98.2 8.2E-05 1.8E-09 89.5 19.8 200 555-793 20-269 (519)
369 PRK00440 rfc replication facto 98.2 5.4E-06 1.2E-10 94.2 9.4 93 840-951 13-116 (319)
370 PRK07952 DNA replication prote 98.1 4.6E-06 1E-10 90.9 8.0 70 879-950 100-175 (244)
371 PF03152 UFD1: Ubiquitin fusio 98.1 2.6E-05 5.7E-10 80.1 12.9 150 13-170 25-175 (176)
372 PF07726 AAA_3: ATPase family 98.1 3.6E-07 7.9E-12 88.4 -0.6 72 880-951 1-76 (131)
373 PRK08116 hypothetical protein; 98.1 5.6E-06 1.2E-10 91.9 8.6 70 878-949 114-190 (268)
374 PRK14971 DNA polymerase III su 98.1 7.6E-06 1.7E-10 100.6 10.5 93 840-950 13-134 (614)
375 PRK08084 DNA replication initi 98.1 6.7E-06 1.5E-10 89.6 8.8 63 879-951 46-111 (235)
376 PRK08181 transposase; Validate 98.1 4.7E-06 1E-10 92.2 7.2 72 878-951 106-181 (269)
377 TIGR02030 BchI-ChlI magnesium 98.1 4.9E-06 1.1E-10 94.9 7.6 47 843-902 3-49 (337)
378 smart00763 AAA_PrkA PrkA AAA d 98.1 7.2E-05 1.6E-09 85.2 16.7 53 555-616 52-104 (361)
379 PF06068 TIP49: TIP49 C-termin 98.1 5.6E-06 1.2E-10 93.2 7.3 84 841-933 21-106 (398)
380 PF01078 Mg_chelatase: Magnesi 98.1 3.8E-06 8.2E-11 88.4 5.4 46 553-615 2-47 (206)
381 PRK09302 circadian clock prote 98.1 4.2E-05 9.2E-10 92.9 15.3 78 874-951 269-377 (509)
382 TIGR00368 Mg chelatase-related 98.1 1.9E-05 4E-10 94.7 11.9 26 590-615 211-236 (499)
383 PRK12377 putative replication 98.1 8.6E-06 1.9E-10 89.1 8.2 70 879-950 102-176 (248)
384 PF00931 NB-ARC: NB-ARC domain 98.1 0.0001 2.2E-09 82.4 17.2 160 590-784 19-202 (287)
385 COG1239 ChlI Mg-chelatase subu 98.1 3.3E-05 7.2E-10 88.2 12.9 84 656-756 145-234 (423)
386 COG2607 Predicted ATPase (AAA+ 98.1 2.4E-05 5.3E-10 82.6 10.9 93 836-946 52-148 (287)
387 PRK09112 DNA polymerase III su 98.1 2.3E-05 4.9E-10 90.2 11.8 53 840-904 19-71 (351)
388 TIGR00678 holB DNA polymerase 98.1 1.8E-05 3.9E-10 83.1 10.1 70 877-951 13-110 (188)
389 PRK08181 transposase; Validate 98.0 1.7E-05 3.8E-10 87.7 10.1 74 590-668 106-180 (269)
390 PRK06835 DNA replication prote 98.0 1.3E-05 2.9E-10 91.2 9.2 70 879-950 184-259 (329)
391 COG0470 HolB ATPase involved i 98.0 1.9E-05 4.2E-10 89.8 10.6 70 880-951 26-123 (325)
392 PRK06526 transposase; Provisio 98.0 5.7E-06 1.2E-10 91.0 5.9 73 877-951 97-173 (254)
393 COG3283 TyrR Transcriptional r 98.0 3.3E-06 7.2E-11 93.1 3.9 154 840-1051 200-369 (511)
394 PRK07471 DNA polymerase III su 98.0 2E-05 4.3E-10 91.2 10.4 51 840-902 15-65 (365)
395 PRK10365 transcriptional regul 98.0 6.8E-05 1.5E-09 89.3 15.4 199 556-791 141-371 (441)
396 PRK05564 DNA polymerase III su 98.0 1.9E-05 4.2E-10 89.8 10.2 93 842-950 2-106 (313)
397 COG0606 Predicted ATPase with 98.0 1.9E-06 4E-11 99.5 1.9 47 841-902 176-222 (490)
398 PF13401 AAA_22: AAA domain; P 98.0 2.2E-05 4.7E-10 76.9 9.3 79 590-668 4-100 (131)
399 TIGR02915 PEP_resp_reg putativ 98.0 3.5E-06 7.6E-11 100.5 4.0 71 878-951 162-247 (445)
400 PF13173 AAA_14: AAA domain 98.0 1.8E-05 4E-10 77.7 8.3 69 879-949 3-73 (128)
401 PTZ00111 DNA replication licen 98.0 2.2E-05 4.7E-10 98.1 10.7 147 588-755 490-658 (915)
402 PF12774 AAA_6: Hydrolytic ATP 98.0 0.00015 3.2E-09 78.6 15.9 133 591-750 33-176 (231)
403 COG3284 AcoR Transcriptional a 98.0 9.5E-07 2.1E-11 104.8 -1.3 127 877-1051 335-482 (606)
404 COG1224 TIP49 DNA helicase TIP 98.0 1E-05 2.2E-10 89.6 6.7 86 841-935 36-123 (450)
405 PRK09183 transposase/IS protei 98.0 1.1E-05 2.5E-10 89.0 7.2 74 877-951 101-178 (259)
406 PRK08727 hypothetical protein; 98.0 1.5E-05 3.3E-10 86.8 7.8 64 879-952 42-108 (233)
407 PF01695 IstB_IS21: IstB-like 98.0 8.9E-06 1.9E-10 84.7 5.5 71 877-949 46-120 (178)
408 PRK05917 DNA polymerase III su 98.0 0.0001 2.2E-09 82.1 14.1 125 590-741 19-154 (290)
409 PRK11361 acetoacetate metaboli 98.0 5.6E-06 1.2E-10 99.2 4.5 71 878-951 166-251 (457)
410 PRK12377 putative replication 98.0 3.7E-05 8E-10 84.2 10.3 72 591-667 102-175 (248)
411 PRK05642 DNA replication initi 97.9 1.9E-05 4.2E-10 86.0 7.6 64 879-952 46-112 (234)
412 PRK10923 glnG nitrogen regulat 97.9 9.3E-06 2E-10 97.6 5.5 71 878-951 161-246 (469)
413 PRK06526 transposase; Provisio 97.9 1.5E-05 3.2E-10 87.7 6.5 74 590-668 98-172 (254)
414 PRK09862 putative ATP-dependen 97.9 7.5E-05 1.6E-09 89.3 12.8 132 589-744 209-391 (506)
415 COG1123 ATPase components of v 97.9 0.00031 6.7E-09 83.6 17.6 31 587-617 32-62 (539)
416 PRK15115 response regulator Gl 97.9 4.5E-06 9.7E-11 99.6 2.1 126 878-1051 157-304 (444)
417 PRK09862 putative ATP-dependen 97.9 1.9E-05 4.1E-10 94.3 7.2 71 877-950 209-307 (506)
418 smart00350 MCM minichromosome 97.9 1.3E-05 2.9E-10 97.0 5.8 103 844-951 203-314 (509)
419 PF14516 AAA_35: AAA-like doma 97.9 0.00053 1.2E-08 78.6 18.5 168 590-777 31-233 (331)
420 KOG3595 Dyneins, heavy chain [ 97.9 0.00017 3.6E-09 96.8 16.0 333 591-945 128-531 (1395)
421 PRK09183 transposase/IS protei 97.9 4E-05 8.6E-10 84.7 8.5 75 589-667 101-176 (259)
422 PRK07952 DNA replication prote 97.8 9.8E-05 2.1E-09 80.6 11.3 72 591-667 100-174 (244)
423 TIGR02237 recomb_radB DNA repa 97.8 8E-05 1.7E-09 79.5 10.4 81 586-669 8-111 (209)
424 COG3283 TyrR Transcriptional r 97.8 0.00019 4.1E-09 79.6 13.2 205 552-791 202-431 (511)
425 PTZ00111 DNA replication licen 97.8 1.4E-05 3E-10 99.8 4.9 104 844-951 450-571 (915)
426 TIGR00602 rad24 checkpoint pro 97.8 2.9E-05 6.2E-10 95.1 7.4 132 839-983 79-239 (637)
427 PRK08939 primosomal protein Dn 97.8 2.5E-05 5.5E-10 88.2 6.5 72 877-950 155-230 (306)
428 COG1484 DnaC DNA replication p 97.8 3E-05 6.6E-10 85.3 6.9 69 877-950 104-180 (254)
429 PRK05707 DNA polymerase III su 97.8 5.6E-05 1.2E-09 86.2 8.6 71 877-950 21-119 (328)
430 PRK06835 DNA replication prote 97.8 0.0001 2.2E-09 84.0 10.7 72 591-667 184-258 (329)
431 PRK06921 hypothetical protein; 97.8 0.0001 2.2E-09 81.8 10.3 72 590-666 117-188 (266)
432 COG1474 CDC6 Cdc6-related prot 97.8 6.4E-05 1.4E-09 86.9 8.9 99 846-953 19-139 (366)
433 PRK06921 hypothetical protein; 97.8 4.9E-05 1.1E-09 84.3 7.7 68 878-948 117-188 (266)
434 PRK14087 dnaA chromosomal repl 97.8 4.7E-05 1E-09 90.7 7.8 71 879-951 142-220 (450)
435 PRK06851 hypothetical protein; 97.8 0.00021 4.5E-09 82.1 12.7 34 879-912 215-251 (367)
436 COG1220 HslU ATP-dependent pro 97.8 5.3E-05 1.2E-09 83.4 7.2 85 846-932 17-106 (444)
437 PRK08058 DNA polymerase III su 97.7 5.7E-05 1.2E-09 86.5 8.0 90 842-950 3-123 (329)
438 PRK13406 bchD magnesium chelat 97.7 0.00021 4.6E-09 87.2 13.1 164 591-773 26-208 (584)
439 COG1239 ChlI Mg-chelatase subu 97.7 9.2E-05 2E-09 84.7 9.2 48 842-902 15-62 (423)
440 PRK10365 transcriptional regul 97.7 1.8E-05 4E-10 94.2 3.8 71 878-951 162-247 (441)
441 PF01695 IstB_IS21: IstB-like 97.7 2.8E-05 6.2E-10 81.0 4.5 72 590-666 47-119 (178)
442 PF13177 DNA_pol3_delta2: DNA 97.7 0.00011 2.5E-09 75.3 8.5 88 848-950 1-115 (162)
443 COG1241 MCM2 Predicted ATPase 97.7 0.00011 2.4E-09 89.8 9.6 140 591-754 320-483 (682)
444 smart00763 AAA_PrkA PrkA AAA d 97.7 7.4E-05 1.6E-09 85.1 7.3 85 842-933 48-144 (361)
445 KOG0478 DNA replication licens 97.7 0.00019 4.1E-09 85.5 10.8 144 587-754 459-626 (804)
446 PRK07399 DNA polymerase III su 97.7 9.5E-05 2.1E-09 83.9 8.2 49 842-902 2-50 (314)
447 KOG1970 Checkpoint RAD17-RFC c 97.7 0.0019 4E-08 75.8 18.6 47 559-615 87-135 (634)
448 cd01120 RecA-like_NTPases RecA 97.7 0.00018 3.9E-09 72.5 9.4 74 593-669 2-99 (165)
449 PRK08939 primosomal protein Dn 97.7 0.00015 3.3E-09 81.9 9.7 73 589-666 155-228 (306)
450 PF00308 Bac_DnaA: Bacterial d 97.7 7.4E-05 1.6E-09 80.6 6.8 71 879-951 35-111 (219)
451 PF13401 AAA_22: AAA domain; P 97.7 7.1E-05 1.5E-09 73.2 6.1 73 878-950 4-100 (131)
452 TIGR02031 BchD-ChlD magnesium 97.7 4.1E-05 8.9E-10 94.1 5.3 70 879-951 17-98 (589)
453 COG3267 ExeA Type II secretory 97.7 0.0013 2.9E-08 70.7 15.9 181 591-794 52-255 (269)
454 cd01120 RecA-like_NTPases RecA 97.6 0.00012 2.6E-09 73.8 7.6 72 881-952 2-100 (165)
455 TIGR01818 ntrC nitrogen regula 97.6 3E-05 6.5E-10 93.1 3.3 71 878-951 157-242 (463)
456 KOG0990 Replication factor C, 97.6 8.2E-05 1.8E-09 81.8 5.7 125 838-982 35-172 (360)
457 PF00910 RNA_helicase: RNA hel 97.6 5.2E-05 1.1E-09 72.2 3.3 23 881-903 1-23 (107)
458 COG1484 DnaC DNA replication p 97.6 8.8E-05 1.9E-09 81.7 5.5 75 589-667 104-179 (254)
459 PRK06964 DNA polymerase III su 97.5 0.0002 4.3E-09 82.0 8.3 28 876-903 19-46 (342)
460 PLN03210 Resistant to P. syrin 97.5 0.00077 1.7E-08 89.8 15.0 177 553-777 183-389 (1153)
461 COG0606 Predicted ATPase with 97.5 7.7E-05 1.7E-09 86.4 4.7 49 550-615 175-223 (490)
462 PRK13765 ATP-dependent proteas 97.5 0.0012 2.6E-08 81.4 15.3 218 553-820 30-397 (637)
463 KOG2170 ATPase of the AAA+ sup 97.5 0.0013 2.8E-08 72.1 13.0 119 557-698 85-206 (344)
464 PRK07132 DNA polymerase III su 97.4 0.0041 8.9E-08 70.1 17.0 151 591-775 19-177 (299)
465 COG3284 AcoR Transcriptional a 97.4 0.00085 1.8E-08 80.3 11.9 195 557-790 316-538 (606)
466 TIGR01618 phage_P_loop phage n 97.4 0.0003 6.4E-09 75.5 7.2 23 590-612 12-34 (220)
467 PRK05818 DNA polymerase III su 97.4 0.0014 3E-08 71.6 12.2 125 589-741 6-147 (261)
468 PRK09361 radB DNA repair and r 97.4 0.00074 1.6E-08 73.0 10.2 42 586-630 19-60 (225)
469 PRK07276 DNA polymerase III su 97.4 0.0027 5.9E-08 71.0 14.6 131 590-751 24-172 (290)
470 PRK06620 hypothetical protein; 97.4 0.00017 3.6E-09 77.6 4.7 28 879-906 45-72 (214)
471 PRK09087 hypothetical protein; 97.4 0.00023 4.9E-09 77.2 5.8 55 879-949 45-99 (226)
472 TIGR02237 recomb_radB DNA repa 97.4 0.00035 7.6E-09 74.6 7.2 79 873-951 7-111 (209)
473 PRK04132 replication factor C 97.4 0.00054 1.2E-08 86.3 9.6 67 878-950 564-643 (846)
474 TIGR02012 tigrfam_recA protein 97.4 0.00085 1.8E-08 76.0 10.3 81 586-669 51-147 (321)
475 TIGR00764 lon_rel lon-related 97.3 0.00028 6.1E-09 87.0 6.9 85 840-939 14-108 (608)
476 PF12774 AAA_6: Hydrolytic ATP 97.3 0.00029 6.2E-09 76.4 6.1 67 877-950 31-97 (231)
477 PRK06871 DNA polymerase III su 97.3 0.0011 2.4E-08 75.4 10.8 70 877-950 23-120 (325)
478 cd00983 recA RecA is a bacter 97.3 0.0014 3.1E-08 74.3 11.5 81 586-669 51-147 (325)
479 cd01121 Sms Sms (bacterial rad 97.3 0.0018 3.9E-08 75.2 12.6 81 586-669 78-172 (372)
480 COG1618 Predicted nucleotide k 97.3 0.0045 9.7E-08 62.2 13.4 27 591-617 6-32 (179)
481 PF00493 MCM: MCM2/3/5 family 97.3 0.00022 4.9E-09 81.7 4.6 145 588-756 55-223 (331)
482 KOG1968 Replication factor C, 97.3 0.00046 1E-08 87.0 7.6 159 593-786 360-530 (871)
483 PF00910 RNA_helicase: RNA hel 97.3 0.0005 1.1E-08 65.5 6.1 24 593-616 1-24 (107)
484 PRK11823 DNA repair protein Ra 97.3 0.0022 4.7E-08 76.5 12.9 81 586-669 76-170 (446)
485 TIGR02012 tigrfam_recA protein 97.3 0.00071 1.5E-08 76.6 8.3 79 874-952 51-148 (321)
486 PHA00729 NTP-binding motif con 97.2 0.00043 9.4E-09 74.2 6.0 24 880-903 19-42 (226)
487 KOG0927 Predicted transporter 97.2 0.0036 7.9E-08 73.4 13.8 30 873-902 411-440 (614)
488 PF03969 AFG1_ATPase: AFG1-lik 97.2 0.00046 1E-08 79.7 5.8 30 587-616 59-88 (362)
489 PF13207 AAA_17: AAA domain; P 97.2 0.00031 6.8E-09 67.8 3.7 31 881-911 2-32 (121)
490 KOG1942 DNA helicase, TBP-inte 97.2 0.0006 1.3E-08 73.8 6.0 83 842-933 36-120 (456)
491 PRK08118 topology modulation p 97.2 0.00072 1.6E-08 69.8 6.4 54 880-933 3-56 (167)
492 COG0488 Uup ATPase components 97.1 0.0031 6.6E-08 76.3 12.6 31 587-617 26-56 (530)
493 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0025 5.3E-08 69.3 10.8 84 586-669 15-129 (235)
494 PRK07993 DNA polymerase III su 97.1 0.0016 3.4E-08 74.7 9.4 72 876-950 22-121 (334)
495 cd01394 radB RadB. The archaea 97.1 0.0033 7.2E-08 67.5 11.4 42 586-630 15-56 (218)
496 cd03216 ABC_Carb_Monos_I This 97.1 0.0019 4.2E-08 66.3 9.0 75 586-667 22-112 (163)
497 PRK08533 flagellar accessory p 97.1 0.0034 7.4E-08 68.2 11.4 79 586-668 20-130 (230)
498 cd01131 PilT Pilus retraction 97.1 0.00082 1.8E-08 71.3 6.3 72 591-664 2-83 (198)
499 PRK07261 topology modulation p 97.1 0.00088 1.9E-08 69.4 6.3 43 880-922 2-44 (171)
500 KOG2228 Origin recognition com 97.1 0.0047 1E-07 68.7 12.0 142 591-755 50-220 (408)
No 1
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-115 Score=991.25 Aligned_cols=826 Identities=35% Similarity=0.509 Sum_probs=610.9
Q ss_pred CeeEEEEeCCcccceeeCCHHHHHHHhhccccCCCCceEEEEEEeCCCC--eEEEEecCCcCCCCceEecHHHHhhcCCC
Q 001560 1 MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQ--RWVVAWSGATSSSSFIEVARQFAECISLA 78 (1052)
Q Consensus 1 ~~~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~el~~~~~~--~~~~gW~g~~s~~~~iei~~~~a~~lgl~ 78 (1052)
|++.|++.+ +|+||||||..++..+... .|+.+|+..|.+.. .+++-|.|..++.+.||||+++|++|||.
T Consensus 3 ~a~vV~~~~-~r~cfv~lP~ql~~ai~~~------~~~~av~~v~~~~~~~~s~~~g~~s~~se~~ieIn~~~A~~l~L~ 75 (952)
T KOG0735|consen 3 MACVVNYKS-LRSCFVNLPEQLLEAISEP------VQNYAVQAVVSKNPIKKSWVFGHGSGSSENVIEINRVYAHTLGLA 75 (952)
T ss_pred ceEEEEeee-chhhhhccHHHHHHHHhcc------ccCceeEEEEcCCChhheeecccCCCCccceEEeehhhHhhccCC
Confidence 677888888 9999999999999999863 45688999887643 23333455556668999999999999999
Q ss_pred CCCEEEEEEecCcccceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEeEEecCceEEEEEEcccCCCCCeE
Q 001560 79 DHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVV 158 (1052)
Q Consensus 79 ~~~~v~~~~~~~~~~~~~v~veP~t~dDWEilel~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~ 158 (1052)
+|+.|.++++.+++.|++|+|||+|+|||||||+||+.+|.+||+|+|||++ ++||+|++++|+|+|+|.++.|+..||
T Consensus 76 e~~~V~l~~~~~v~~~~~V~VeP~TsdDWEIiElnA~~~e~~lL~Q~RIv~~-~~f~iwl~~~t~i~fqv~rl~Ps~~~g 154 (952)
T KOG0735|consen 76 ENQEVKLSIIDHVHEATQVEVEPVTSDDWEIIELNAEWLEENLLVQTRIVTP-EIFIIWLPSGTVIQFQVDRLIPSMLYG 154 (952)
T ss_pred CCCeEEEEEcCCccceeEEEEeeccCccHHHHHhhHHHHhhhhhhheeeccc-ceeEEEEcCccEEEEEEeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EecCCCEEEEcccCCCCCCcccccchhhcccCccccccceeeeccCCCCcccccccCCceecccccceEEECCCcccccc
Q 001560 159 QLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVS 238 (1052)
Q Consensus 159 ~l~~~tev~vaPk~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 238 (1052)
||.++|||+||||+|+...+.+++.....+... +..+|. ....+...|..+....+++||| +++.
T Consensus 155 Rl~~~Tev~VaPK~~k~~l~~~~~g~~e~n~lk----s~~lr~------~~lrs~v~~~~~p~~n~s~vyi--~~aq--- 219 (952)
T KOG0735|consen 155 RLLRGTEVLVAPKPNKSALNVKENGVIEENTLK----SRSLRK------VQLRSVVEGRLLPDSNSSTVYI--NTAQ--- 219 (952)
T ss_pred eecCCceEEEecCcccchhhhhcccchhhhhhh----hhhhhh------hhhhhheecccccCcccceeee--cccc---
Confidence 999999999999999988644332222111110 112221 1245566777777777889998 4332
Q ss_pred ccCceEEEeccCCCcCCCCCCCCCccccCccccccccCCCCCCccccceeEEEEEeeCcccccceeecHHHHHHHhcccc
Q 001560 239 LCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLH 318 (1052)
Q Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~ 318 (1052)
....+....+++.+.++.+. + .+.-. ..|. ...+-+-..++|...+|..|.+++.++|.++.+...
T Consensus 220 l~t~q~~~~~~k~~Lr~ssr-~-------d~~~~--~~g~----~~Skvv~~~~~c~~q~P~~H~ai~~~l~~~~~tpe~ 285 (952)
T KOG0735|consen 220 LVTAQGPALSVKLPLRQSSR-S-------DEVYN--DGGN----LKSKVVEQDVVCPKQIPEFHFAISKSLWLSYSTPED 285 (952)
T ss_pred ceeccCceeeeeccccCCcc-c-------hhHhh--ccCc----chhhhhcccccCCCCCCcceeeEehhHHHhhcCCcc
Confidence 22233323344444333110 0 00000 0110 111222333677778899999999999999974100
Q ss_pred ceEEEEeecccccCCCCceecccceeeeccccccccccccccccccccccccccccCCccccCCCCcchhhHHhhhcCCC
Q 001560 319 SWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEP 398 (1052)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~l~p~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1052)
. +| .+.++ ..|..++.+..+.+-.
T Consensus 286 ----------------------d--ik-------~~l~~------------------------~iw~~~n~i~~~~~i~- 309 (952)
T KOG0735|consen 286 ----------------------D--IK-------TGLKF------------------------VIWNLNNPISSSKFIE- 309 (952)
T ss_pred ----------------------c--hh-------cCcee------------------------eeeccccchhhhhhhH-
Confidence 0 11 11111 1122222221111000
Q ss_pred CCchhhHHHH-hhhcchhhHHHHHHHHHHHhhhhccccccccccccccCCceEEEEEeccccCCCCCCCCCcCcccchhh
Q 001560 399 SSKEDEEAVY-QFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKT 477 (1052)
Q Consensus 399 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1052)
..+- .| .-++++++. .++.++ +..+++++.+ ++.+|++....++.....+..++..+.+..
T Consensus 310 --~l~~--vg~p~~tkk~l~--------~eL~A~----~~~ts~li~~--t~k~~~ie~~es~~~l~nq~eV~~~w~q~~ 371 (952)
T KOG0735|consen 310 --ELKR--VGLPDETKKNLS--------SELVAA----KLKTSYLIDG--TLKLFEIEVLESVSSLSNQEEVVRLWDQLK 371 (952)
T ss_pred --HHHh--ccCCcccccchh--------Hhhhhh----hhccccccCC--ceEEEEeeccccccccccchHHhhHHHhhc
Confidence 0000 00 011222232 122111 1333555555 678888876322221111112222222111
Q ss_pred hhhccchhhhhhcccccccccCCCCchhhhhHHhhccCCCCHHHHHHHhcccCCCCcccceeeccccccccccccccccc
Q 001560 478 KARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLS 557 (1052)
Q Consensus 478 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 557 (1052)
.-+..+.|..+.-.+..+.+.+.|.. ++. .....+. .++..
T Consensus 372 vt~~~~~ei~~~~~v~~~~~~g~K~~-----------------------------~~~----l~~~~~e----~d~i~-- 412 (952)
T KOG0735|consen 372 VTKMPPLEIKITSDVNLPVLAGIKEN-----------------------------SPD----LVMSPFE----HDFIQ-- 412 (952)
T ss_pred cccCCchheeeeeeecchhhhcchhc-----------------------------Ccc----cccCcCC----Cceee--
Confidence 11111111111111111111110000 000 0000000 11111
Q ss_pred cchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCch
Q 001560 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG 637 (1052)
Q Consensus 558 G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~ 637 (1052)
.....++..+ ..++| ...++++||+||+|||||.|++++++++..+ ..+|+.+++|+.+.+...
T Consensus 413 -~~s~kke~~n---~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 413 -VPSYKKENAN---QELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred -cchhhhhhhh---hhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhH
Confidence 1111111111 23333 3456789999999999999999999998743 448999999999999999
Q ss_pred hhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecC
Q 001560 638 PIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ 717 (1052)
Q Consensus 638 ~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn 717 (1052)
+.+++.+..+|.+|.|++|+|++|||+|.|++ .++.++++......++..++.+.+..+...+. .+.+||+.+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~-~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~------~ia~Iat~q 549 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS-ASSNENGQDGVVSERLAAFLNQVIKIYLKRNR------KIAVIATGQ 549 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc-cCcccCCcchHHHHHHHHHHHHHHHHHHccCc------EEEEEEech
Confidence 99999999999999999999999999999997 34556666777788888888888887776543 489999999
Q ss_pred CCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhc
Q 001560 718 SLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYL 797 (1052)
Q Consensus 718 ~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~ 797 (1052)
....+++.|.++++|+.++.+++|+..+|.+||+..+++....+..+.++.++..|+||.+.||..+++||+|.++....
T Consensus 550 e~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leri 629 (952)
T KOG0735|consen 550 ELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERI 629 (952)
T ss_pred hhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887777777888899999999999999999999999984432
Q ss_pred ccCCcccccccccccccccccccccccccccccccccccCCCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCccc
Q 001560 798 HSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRL 877 (1052)
Q Consensus 798 ~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~ 877 (1052)
. . ....++.++|.+++++|.|.++|++....+. ..+|+|++|+.++++.+.+.++||.+|+.+|.+++++.
T Consensus 630 s------~-~~klltke~f~ksL~~F~P~aLR~ik~~k~t--gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~ 700 (952)
T KOG0735|consen 630 S------N-GPKLLTKELFEKSLKDFVPLALRGIKLVKST--GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL 700 (952)
T ss_pred c------c-CcccchHHHHHHHHHhcChHHhhhccccccC--CCCceecccHHHHHHHHHHHHhccccchHHHhhCCccc
Confidence 1 1 2237999999999999999999999998886 48999999999999999999999999999999999999
Q ss_pred CCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCC
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN 957 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~ 957 (1052)
+.|+|||||||||||.+|.++|..++++||++++++++++|+|++|+++|++|.+|+..+||||||||+|+++|+||+++
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs 780 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS 780 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhccccccceeeeeeeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC------
Q 001560 958 TGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL------ 1031 (1052)
Q Consensus 958 ~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~------ 1031 (1052)
+|++||+||| |||+|||+++.+||+|+|||.|
T Consensus 781 TGVTDRVVNQ------------------------------------------lLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 781 TGVTDRVVNQ------------------------------------------LLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred CCchHHHHHH------------------------------------------HHHhhccccccceEEEEEecCCccccCH
Confidence 9999999999 9999999999999999999999
Q ss_pred ---CCCCcceEEEecCCccccc
Q 001560 1032 ---EFFHYNVLLFCSFIIFLIL 1050 (1052)
Q Consensus 1032 ---r~gRfd~~i~~~~p~~~~~ 1050 (1052)
||||||+.+||++|+.+-.
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHH
Confidence 9999999999999997643
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-79 Score=691.49 Aligned_cols=438 Identities=32% Similarity=0.510 Sum_probs=393.9
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
+..|.++||++..+.++.+.+..+. .++.|..+|..||+|+|||||||||||+||+++|.+++ .+++.+++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~---~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------vPf~~isA 256 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIK---HPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------VPFLSISA 256 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhc---CchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC------CceEeecc
Confidence 4578899999999999988775544 45689999999999999999999999999999999999 88999999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
.++.+...|+.+++++++|++|....|||+||||||.+.+++... ..+-..++..+|+..||++..... ...+
T Consensus 257 peivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a----qreMErRiVaQLlt~mD~l~~~~~---~g~~ 329 (802)
T KOG0733|consen 257 PEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA----QREMERRIVAQLLTSMDELSNEKT---KGDP 329 (802)
T ss_pred hhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH----HHHHHHHHHHHHHHhhhccccccc---CCCC
Confidence 999999999999999999999999999999999999998765432 223345888999999999875422 1136
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
|+|||+||+|+++|++|+|+|||++.|.+..|+..+|.+||+.++++..+.. +-.+..||..|+||.|+||..||.+|.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998655543 445899999999999999999999999
Q ss_pred HHHHhhhcccCC----------c-----c--cc----------------------------------ccccccccccccc
Q 001560 790 HAAVGRYLHSDS----------S-----F--EK----------------------------------HIKPTLVRDDFSQ 818 (1052)
Q Consensus 790 ~~a~~r~~~~~~----------~-----~--~~----------------------------------~~~~~lt~eDf~~ 818 (1052)
..|+.|.+.... . . +. .+...+..+||+.
T Consensus 409 ~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~ 488 (802)
T KOG0733|consen 409 FVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEE 488 (802)
T ss_pred HHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHH
Confidence 999999874221 0 0 00 0012356789999
Q ss_pred ccccccccccccccccccCCCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHH
Q 001560 819 AMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA 898 (1052)
Q Consensus 819 Al~~~~P~~lr~v~~~~~~~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~al 898 (1052)
|+..+.|++.|+...+.|+ ++|+|||++++++.+|...+.+|.++++.|+..|+..+.|+||+||||||||++|||+
T Consensus 489 Al~~iQPSakREGF~tVPd---VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 489 ALSKIQPSAKREGFATVPD---VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred HHHhcCcchhcccceecCC---CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 9999999999998888875 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeee
Q 001560 899 AAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIY 978 (1052)
Q Consensus 899 A~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~ 978 (1052)
|++.|.+|+.|++++|+++|+||+|+.||.+|++||..+|||+||||+|+|.++|+....++..|+|||
T Consensus 566 ANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNq----------- 634 (802)
T KOG0733|consen 566 ANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQ----------- 634 (802)
T ss_pred hhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred eeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 979 FWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||+||||++.+.+|+||||||| ||||||+.+|+++|+.+-
T Consensus 635 -------------------------------LLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 635 -------------------------------LLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred -------------------------------HHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 9999999999999999999999 999999999999999763
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-70 Score=627.24 Aligned_cols=414 Identities=32% Similarity=0.542 Sum_probs=380.1
Q ss_pred cccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 001560 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1052)
Q Consensus 554 ~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~ 633 (1052)
..++|....+..+.+.+..-+ ..+..+...+.++|+++|+|||||+|||.+++++|++.+ ++++.+++..+.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl--~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~~~i~~peli 255 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPL--RHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFLFLINGPELI 255 (693)
T ss_pred cccchhHHHHHHHHHHHHhhh--cchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC------ceeEecccHHHH
Confidence 367788888888877664332 356688889999999999999999999999999999988 899999999999
Q ss_pred CCchhhHHHHhhhhHHHhhccC-CeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEE
Q 001560 634 LEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (1052)
Q Consensus 634 ~~~~~~~~~~l~~~f~~a~~~~-PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~v 712 (1052)
.+..++.+..++..|++|..++ |+++||||+|.++|++..... ...++..+|+.+|++..... +++|
T Consensus 256 ~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-----~e~Rv~sqlltL~dg~~~~~-------~viv 323 (693)
T KOG0730|consen 256 SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-----VESRVVSQLLTLLDGLKPDA-------KVIV 323 (693)
T ss_pred HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-----HHHHHHHHHHHHHhhCcCcC-------cEEE
Confidence 9999999999999999999999 999999999999986544332 34578889999999876432 5999
Q ss_pred EEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 001560 713 VASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1052)
Q Consensus 713 Iattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a 792 (1052)
++++|++++||++++| |||++.+.+..|+..+|.+|++.+.++.++. ++..+..+|..|+||+++||..+|..|...+
T Consensus 324 l~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999987776 6778999999999999999999999998777
Q ss_pred HhhhcccCCcccccccccccccccccccccccccccccccccccCCCCCCccccccchhHHHHHHHHhhcccCChhhhhc
Q 001560 793 VGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQ 872 (1052)
Q Consensus 793 ~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~ 872 (1052)
..+ ++++|..|+.+..|+++|......+ +++|+||||++++|+.|++.+.||+++++.|.+
T Consensus 402 ~r~----------------~~~~~~~A~~~i~psa~Re~~ve~p---~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r 462 (693)
T KOG0730|consen 402 TRR----------------TLEIFQEALMGIRPSALREILVEMP---NVSWDDIGGLEELKRELQQAVEWPLKHPEKFAR 462 (693)
T ss_pred hhh----------------hHHHHHHHHhcCCchhhhheeccCC---CCChhhccCHHHHHHHHHHHHhhhhhchHHHHH
Confidence 655 6789999999999999999886555 599999999999999999999999999999999
Q ss_pred CCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 873 ~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
+|+.+++|+|||||||||||++||++|++++++|+.+++++++++|+|++|+.+|++|++|+..+|||+||||||+++++
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~ 542 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGS 542 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC-
Q 001560 953 RGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL- 1031 (1052)
Q Consensus 953 r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~- 1031 (1052)
|++...++++|++++ ||+||||++..++|+|||||||
T Consensus 543 R~g~~~~v~~RVlsq------------------------------------------LLtEmDG~e~~k~V~ViAATNRp 580 (693)
T KOG0730|consen 543 RGGSSSGVTDRVLSQ------------------------------------------LLTEMDGLEALKNVLVIAATNRP 580 (693)
T ss_pred cCCCccchHHHHHHH------------------------------------------HHHHcccccccCcEEEEeccCCh
Confidence 987777999999999 9999999999999999999999
Q ss_pred --------CCCCcceEEEecCCccccc
Q 001560 1032 --------EFFHYNVLLFCSFIIFLIL 1050 (1052)
Q Consensus 1032 --------r~gRfd~~i~~~~p~~~~~ 1050 (1052)
||||||+.||+++||.+-.
T Consensus 581 d~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 581 DMIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred hhcCHHHcCCcccceeEeecCccHHHH
Confidence 9999999999999998753
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-59 Score=543.06 Aligned_cols=393 Identities=37% Similarity=0.587 Sum_probs=329.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhcc
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1052)
...+||+|+||||||++++++|++++ .|+..++|.++........+.++..+|..|+...|+|||+-++|.+..
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg------~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i 504 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELG------LHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI 504 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhC------CceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee
Confidence 34599999999999999999999999 899999999999999999999999999999999999999999999873
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHH
Q 001560 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (1052)
Q Consensus 670 ~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~I 749 (1052)
+. ++. . ..++...+...+..- ......+++++|+++++.+.+++.+++ .|.+.|.++.|+.+||.+|
T Consensus 505 d~---dgg-e---d~rl~~~i~~~ls~e----~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~i 571 (953)
T KOG0736|consen 505 DQ---DGG-E---DARLLKVIRHLLSNE----DFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEI 571 (953)
T ss_pred cC---CCc-h---hHHHHHHHHHHHhcc----cccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHH
Confidence 22 221 1 124444444443300 011223479999999999999999999 7777899999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccC---------Cccccccccccccccccccc
Q 001560 750 LEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSD---------SSFEKHIKPTLVRDDFSQAM 820 (1052)
Q Consensus 750 L~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~---------~~~~~~~~~~lt~eDf~~Al 820 (1052)
|+.++....+. .+..+..++.+|.||+.+|++.++..+-..+..+..... ..........++++||.+++
T Consensus 572 Lq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kal 650 (953)
T KOG0736|consen 572 LQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKAL 650 (953)
T ss_pred HHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHH
Confidence 99998765432 344578899999999999999998877444433332111 11112223678999999999
Q ss_pred ccccccccccccccccCCCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHH
Q 001560 821 HEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900 (1052)
Q Consensus 821 ~~~~P~~lr~v~~~~~~~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~ 900 (1052)
.+...... .....|..+++.|+||||++++|..+.+.+.+|++|+++|.. |+++++|+|||||||||||.+|||+|.
T Consensus 651 s~~~~~fs--~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 651 SRLQKEFS--DAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred HHHHHhhh--hhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHh
Confidence 87654332 234566678899999999999999999999999999999976 788899999999999999999999999
Q ss_pred HcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCC--CCcccchhhhhccccccceeeee
Q 001560 901 ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQVSSTSYLFIIY 978 (1052)
Q Consensus 901 ~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~--~~~~~~~r~v~~~~~~~~~~i~~ 978 (1052)
+|..+|++|+++||+++|+|++|+++|++|++||.++||||||||+|+++|+||. ++.|++||+|.|
T Consensus 728 EcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQ----------- 796 (953)
T KOG0736|consen 728 ECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQ----------- 796 (953)
T ss_pred hceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999999999999986 467999999999
Q ss_pred eeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCc--ccCCeEEEEeCCC---------CCCCcceEEEecCCcc
Q 001560 979 FWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVE--VLTGVFVFAATRL---------EFFHYNVLLFCSFIIF 1047 (1052)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~--~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~ 1047 (1052)
||.||||+. +.++||||+|||| ||||||+.+|++.++-
T Consensus 797 -------------------------------LLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 797 -------------------------------LLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred -------------------------------HHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCcc
Confidence 999999998 5679999999999 9999999999998863
No 5
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-55 Score=550.58 Aligned_cols=436 Identities=31% Similarity=0.514 Sum_probs=376.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+++++|++..++.+.+.+...+ ..+..|..+++.++.++||+||||||||++++++|++++ .+++.+++
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~--~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~------~~~i~i~~ 245 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPM--KHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG------AYFISING 245 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC------CeEEEEec
Confidence 4567789999999999988876443 356788899999999999999999999999999999987 67888999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
..+...+.+...+.++.+|+.+....|+||||||+|.+++.+....+ .....+...|...++.+... +.
T Consensus 246 ~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~----~~~~~~~~~Ll~~ld~l~~~-------~~ 314 (733)
T TIGR01243 246 PEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG----EVEKRVVAQLLTLMDGLKGR-------GR 314 (733)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc----hHHHHHHHHHHHHhhccccC-------CC
Confidence 98888888888889999999999999999999999999865433221 22235677788888876543 25
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+++|+++|.++.+|+++++++||+..+.++.|+.++|.+||+.+.....+ ..+..+..++..++||+++|+..+++.|.
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~l~~la~~t~G~~gadl~~l~~~a~ 393 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVDLDKLAEVTHGFVGADLAALAKEAA 393 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999977654333 23445889999999999999999999999
Q ss_pred HHHHhhhcccCCc------c--cccccccccccccccccccccccccccccccccCCCCCCccccccchhHHHHHHHHhh
Q 001560 790 HAAVGRYLHSDSS------F--EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIE 861 (1052)
Q Consensus 790 ~~a~~r~~~~~~~------~--~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~g~~~vk~~l~~~i~ 861 (1052)
..++.|....... . .......++.+||..|+....|+.++......+ ...|++++|++.+++.|++.+.
T Consensus 394 ~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~---~~~~~di~g~~~~k~~l~~~v~ 470 (733)
T TIGR01243 394 MAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVP---NVRWSDIGGLEEVKQELREAVE 470 (733)
T ss_pred HHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhcccc---ccchhhcccHHHHHHHHHHHHH
Confidence 9988876532110 0 011224578899999999999998887655444 5899999999999999999999
Q ss_pred cccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEE
Q 001560 862 LPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLL 941 (1052)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~IL 941 (1052)
|++++++.+..++++++.|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|+.|+...||||
T Consensus 471 ~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~ii 550 (733)
T TIGR01243 471 WPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAII 550 (733)
T ss_pred hhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccCCcCCCC-CcccchhhhhccccccceeeeeeeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCccc
Q 001560 942 FFDEFDSIAPKRGHD-NTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVL 1020 (1052)
Q Consensus 942 fiDEid~l~~~r~~~-~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 1020 (1052)
||||+|+++++|+.+ ..+..++++++ ||++|||+...
T Consensus 551 fiDEid~l~~~r~~~~~~~~~~~~~~~------------------------------------------lL~~ldg~~~~ 588 (733)
T TIGR01243 551 FFDEIDAIAPARGARFDTSVTDRIVNQ------------------------------------------LLTEMDGIQEL 588 (733)
T ss_pred EEEChhhhhccCCCCCCccHHHHHHHH------------------------------------------HHHHhhcccCC
Confidence 999999999998754 34567888999 99999999888
Q ss_pred CCeEEEEeCCC---------CCCCcceEEEecCCccccc
Q 001560 1021 TGVFVFAATRL---------EFFHYNVLLFCSFIIFLIL 1050 (1052)
Q Consensus 1021 ~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~~ 1050 (1052)
++++||+|||+ ||||||+.||+++|+.+..
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R 627 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEAR 627 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHH
Confidence 99999999999 9999999999999997653
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=442.16 Aligned_cols=400 Identities=32% Similarity=0.482 Sum_probs=345.6
Q ss_pred cccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeE
Q 001560 579 GLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSI 658 (1052)
Q Consensus 579 ~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsI 658 (1052)
+..+...+..++.+++++||||+|||++++++|.. . .+...++.......+.+..+..+...|..+....|++
T Consensus 7 ~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 79 (494)
T COG0464 7 PELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G------AEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSI 79 (494)
T ss_pred HHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c------CcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCe
Confidence 34566677888999999999999999999999998 3 3336677777788888988999999999999999999
Q ss_pred EEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeC
Q 001560 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQL 738 (1052)
Q Consensus 659 L~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i 738 (1052)
+++||+|.+.+.+.. ........+...+...++... . +.+.+++.++.+..+++++++++||+..+.+
T Consensus 80 i~~d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~-------~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (494)
T COG0464 80 IFIDEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-R-------GQVIVIGATNRPDGLDPAKRRPGRFDREIEV 147 (494)
T ss_pred EeechhhhcccCccc----cccchhhHHHHHHHHhccccc-C-------CceEEEeecCCccccChhHhCccccceeeec
Confidence 999999999976544 122233466777777777765 1 1378888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccc
Q 001560 739 PAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQ 818 (1052)
Q Consensus 739 ~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~ 818 (1052)
..|+...+.+|+.......... .+.....++..+.||.++|+..++..+...+..|.. ........++.+||.+
T Consensus 148 ~~~~~~~~~ei~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----~~~~~~~~~~~~~~~~ 221 (494)
T COG0464 148 NLPDEAGRLEILQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----DLVGEYIGVTEDDFEE 221 (494)
T ss_pred CCCCHHHHHHHHHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----ccCcccccccHHHHHH
Confidence 9999999999988766543322 255688999999999999999999999888887742 0112234578899999
Q ss_pred ccccccccccccccccccCCCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHH
Q 001560 819 AMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA 898 (1052)
Q Consensus 819 Al~~~~P~~lr~v~~~~~~~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~al 898 (1052)
+++...|+ +++.... +.+.|.+++|++.+++.+++.+.+++++++.|...+++++.++|||||||||||++|+++
T Consensus 222 ~l~~~~~~--~~~~~~~---~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkav 296 (494)
T COG0464 222 ALKKVLPS--RGVLFED---EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAV 296 (494)
T ss_pred HHHhcCcc--cccccCC---CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHH
Confidence 99999887 4444333 358999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeee
Q 001560 899 AAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIY 978 (1052)
Q Consensus 899 A~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~ 978 (1052)
|.+++.+|+.+++++++++|+|++|++++.+|..|+..+||||||||+|++++.|+.+..+...|++++
T Consensus 297 a~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~----------- 365 (494)
T COG0464 297 ALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQ----------- 365 (494)
T ss_pred HhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999999998777777899999
Q ss_pred eeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 979 FWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||++|||++..++|+||+|||+ ||||||+.+||++|+.+.
T Consensus 366 -------------------------------lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 366 -------------------------------LLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred -------------------------------HHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 9999999999999999999999 999999999999999864
Q ss_pred c
Q 001560 1050 L 1050 (1052)
Q Consensus 1050 ~ 1050 (1052)
.
T Consensus 415 r 415 (494)
T COG0464 415 R 415 (494)
T ss_pred H
Confidence 3
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-39 Score=346.47 Aligned_cols=172 Identities=35% Similarity=0.545 Sum_probs=162.0
Q ss_pred CCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhh
Q 001560 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1052)
Q Consensus 838 ~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~ 917 (1052)
.+.++|++|||+++..+.+++.+++|+++|++|...|+.+|+|+|||||||||||++|||+|++.+..|+.+.+|+|+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhh
Q 001560 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILV 997 (1052)
Q Consensus 918 yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 997 (1052)
|+|+..+-+|++|+.|+..+|||+||||||+++.+|..++++ .+|=|+.
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~-gDrEVQR------------------------------ 273 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTS-GDREVQR------------------------------ 273 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCC-chHHHHH------------------------------
Confidence 999999999999999999999999999999999999866555 4555544
Q ss_pred hhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 998 NFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 998 ~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
+|-+||++|||+...++|-||||||| |||||||.|.|++|+.+
T Consensus 274 --------TmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~ 325 (406)
T COG1222 274 --------TMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEE 325 (406)
T ss_pred --------HHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHH
Confidence 56679999999999999999999999 99999999999999976
No 8
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-38 Score=349.14 Aligned_cols=374 Identities=21% Similarity=0.322 Sum_probs=280.7
Q ss_pred cccccccccccchhHHHHHHHHH--HHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRI--KVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV 625 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l--~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~ 625 (1052)
+++..-..++|++..+.++..+. ..+.+| ....++|.+.-+|+|||||||||||.+||.+.+.|+.+. -.
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp---~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre-----PK 286 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPP---EVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE-----PK 286 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCH---HHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC-----Cc
Confidence 45555567899999999998866 355544 467889999999999999999999999999999998643 34
Q ss_pred EEecccccCCchhhHHHHhhhhHHHhhcc--------CCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001560 626 FVCCSRLSLEKGPIIRQALSNFISEALDH--------APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1052)
Q Consensus 626 ~v~~s~L~~~~~~~~~~~l~~~f~~a~~~--------~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~ 697 (1052)
.++.-++..+++|+.+..++++|..|..- .-.|+++||||.+|.++....++ ...-..+.++|+.-||+.
T Consensus 287 IVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~--TGVhD~VVNQLLsKmDGV 364 (744)
T KOG0741|consen 287 IVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS--TGVHDTVVNQLLSKMDGV 364 (744)
T ss_pred ccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC--CCccHHHHHHHHHhcccH
Confidence 47788888899999999999999887431 12499999999999876655442 223347888898888876
Q ss_pred ccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhc---cCCCCHHHHHHHhhhcC
Q 001560 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR---SLECSDEILLDVASKCD 774 (1052)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~---~~~~sd~~l~~La~~te 774 (1052)
..- .+|+||+.||+++.+|++|+|||||..++++..||+..|.+|++.+..+. +.--++.++.+||.+|.
T Consensus 365 eqL-------NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTK 437 (744)
T KOG0741|consen 365 EQL-------NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTK 437 (744)
T ss_pred Hhh-------hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhc
Confidence 543 26999999999999999999999999999999999999999998766542 33334556999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcccCC----cccccccccccccccccccccccccccccccccc--cCCCCCCcccccc
Q 001560 775 GYDAYDLEILVDRTVHAAVGRYLHSDS----SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTS--AEGGRSGWDDVGG 848 (1052)
Q Consensus 775 G~s~~DL~~Lv~~A~~~a~~r~~~~~~----~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~--~~~~~~~~~~i~g 848 (1052)
.|++++|+.+++.|...|+.|....+. .....++..++++||..|+.+.+|+.-....... .......|...
T Consensus 438 NfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~-- 515 (744)
T KOG0741|consen 438 NFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP-- 515 (744)
T ss_pred CCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc--
Confidence 999999999999999999999875542 1123345678999999999999886422111000 00111222221
Q ss_pred chhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccH----H
Q 001560 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE----Q 924 (1052)
Q Consensus 849 ~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese----~ 924 (1052)
+.+.+.+-..+ -+..+.....+-..+||.||||+|||+||..+|..+++||+.+-.++-+ +|-+| .
T Consensus 516 ---v~~il~~G~ll----v~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~ 585 (744)
T KOG0741|consen 516 ---VTRILDDGKLL----VQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCA 585 (744)
T ss_pred ---HHHHHhhHHHH----HHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHH
Confidence 11112111111 0111112223345799999999999999999999999999998766543 55555 4
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 925 AVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 925 ~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
.++.+|+.|.+..-+|+++|+++.|.
T Consensus 586 ~i~k~F~DAYkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 586 HIKKIFEDAYKSPLSIIVVDDIERLL 611 (744)
T ss_pred HHHHHHHHhhcCcceEEEEcchhhhh
Confidence 68999999999999999999999986
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-37 Score=330.90 Aligned_cols=249 Identities=23% Similarity=0.341 Sum_probs=217.6
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v 627 (1052)
..+.++.++||++.+++++++.+. ++...+++|...|+.||+|||||||||||||.||||+|.... +.|+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VE--LPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~------AtFIrv 216 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVE--LPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD------ATFIRV 216 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhc--ccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC------ceEEEe
Confidence 346778999999999999999774 334567899999999999999999999999999999999987 889999
Q ss_pred ecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCc
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
..++|..++.|+-.+.++++|..|+.++|||+||||||.+.+.+.+...+.+ ..+++..-.|+..||++...
T Consensus 217 vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gD-rEVQRTmleLL~qlDGFD~~------- 288 (406)
T COG1222 217 VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGD-REVQRTMLELLNQLDGFDPR------- 288 (406)
T ss_pred ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCch-HHHHHHHHHHHHhccCCCCC-------
Confidence 9999999999999999999999999999999999999999988777655544 44445555667778887764
Q ss_pred CcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~ 787 (1052)
++|-||++||+++.|||+|+|||||++.|+||.|+.+.|.+||+.+.++..+. .+-.++.+|+.|+|++|+||+.+|.+
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999888765543 23459999999999999999999999
Q ss_pred HHHHHHhhhcccCCccccccccccccccccccccccc
Q 001560 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1052)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1052)
|-..|++. ....++++||.+|.+...
T Consensus 368 AGm~AiR~-----------~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 368 AGMFAIRE-----------RRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HhHHHHHh-----------ccCeecHHHHHHHHHHHH
Confidence 99999876 235799999999988754
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=325.73 Aligned_cols=249 Identities=20% Similarity=0.295 Sum_probs=218.4
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEe
Q 001560 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1052)
Q Consensus 549 ~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~ 628 (1052)
.+.++++++|++..+.++.+.+.. ....+..|.++|+.+|+|||||||||||||++||++|.+.+ .+++.+.
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~--p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~------~nFlsvk 500 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEW--PLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG------MNFLSVK 500 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhh--hhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc------CCeeecc
Confidence 356678999999888888876643 34567899999999999999999999999999999999988 7899999
Q ss_pred cccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcC
Q 001560 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1052)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1052)
+.++..+++|+.++.++++|+.|+..+|+|+||||||.+.+.+++..+ ....+++.+|++.||++....
T Consensus 501 gpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~----~v~~RVlsqLLtEmDG~e~~k------- 569 (693)
T KOG0730|consen 501 GPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS----GVTDRVLSQLLTEMDGLEALK------- 569 (693)
T ss_pred CHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc----chHHHHHHHHHHHcccccccC-------
Confidence 999999999999999999999999999999999999999987653222 556799999999999987653
Q ss_pred cEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 001560 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A 788 (1052)
+|+|||+||+++.||++++|||||++.+++|+||.+.|.+||+.++++..+.- +..+..||..|+||+|+||..+|++|
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~-~vdl~~La~~T~g~SGAel~~lCq~A 648 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE-DVDLEELAQATEGYSGAEIVAVCQEA 648 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc-cccHHHHHHHhccCChHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999988755432 24699999999999999999999999
Q ss_pred HHHHHhhhcccCCccccccccccccccccccccccccc
Q 001560 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1052)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1052)
+..|+.+.+ +...++.++|++|++..+++
T Consensus 649 ~~~a~~e~i---------~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 649 ALLALRESI---------EATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHHHhc---------ccccccHHHHHHHHHhhccc
Confidence 999988754 23568899999999876654
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=310.99 Aligned_cols=259 Identities=24% Similarity=0.313 Sum_probs=216.1
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
+.++.++|+++..-.++... .+.+..++..|..+|+..|.|||||||||||||.||||+|++.+ .+|+.|-.
T Consensus 507 dVtW~dIGaL~~vR~eL~~a--I~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag------~NFisVKG 578 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMA--ILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG------ANFISVKG 578 (802)
T ss_pred CCChhhcccHHHHHHHHHHH--HhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc------CceEeecC
Confidence 56677777766555554443 34445578899999999999999999999999999999999988 78999999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
.+|..+|+|+.++.++.+|+.|+..+||||||||+|.|++.+++.. .....++.++|+..||++..+. +
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~----s~~s~RvvNqLLtElDGl~~R~-------g 647 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG----SSVSSRVVNQLLTELDGLEERR-------G 647 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC----chhHHHHHHHHHHHhccccccc-------c
Confidence 9999999999999999999999999999999999999998876654 3445689999999999987654 5
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHH-HHHHHhhhcC--CCCHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCD--GYDAYDLEILVD 786 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~-~l~~La~~te--G~s~~DL~~Lv~ 786 (1052)
|.|||+||+|+-+|++++|+|||++.++++.|+.++|.+||+...+.....++++ .++.||+.+. ||+|+||..||+
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999988655555555 5999998765 999999999999
Q ss_pred HHHHHHHhhhcccCC-cccccc----cccccccccccccccccccc
Q 001560 787 RTVHAAVGRYLHSDS-SFEKHI----KPTLVRDDFSQAMHEFLPVA 827 (1052)
Q Consensus 787 ~A~~~a~~r~~~~~~-~~~~~~----~~~lt~eDf~~Al~~~~P~~ 827 (1052)
+|...|+.+.+.... ..++.. ...+++.+|+.|+....|+.
T Consensus 728 eAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 728 EASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 999988887653211 111111 12467789999999988853
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.1e-32 Score=281.57 Aligned_cols=172 Identities=34% Similarity=0.542 Sum_probs=157.9
Q ss_pred CCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhh
Q 001560 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1052)
Q Consensus 838 ~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~ 917 (1052)
.+.++|.|+||++-.|+.+++.+++|+.+.+++++.|+.+++|+|+|||||||||++|+++|+.....||.+.+++++.+
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhh
Q 001560 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILV 997 (1052)
Q Consensus 918 yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 997 (1052)
|.|+..+-+|++|+.|+.++|+|+||||+|+++.+|-...+++ +|-+..+
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtga-drevqri----------------------------- 278 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGA-DREVQRI----------------------------- 278 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccc-cHHHHHH-----------------------------
Confidence 9999999999999999999999999999999999997655553 3333331
Q ss_pred hhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 998 NFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 998 ~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
+-+||++|||+....+|-||||||| ||||+|+.|.|++|+-.
T Consensus 279 ---------l~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrr 329 (408)
T KOG0727|consen 279 ---------LIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 329 (408)
T ss_pred ---------HHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchh
Confidence 2239999999999999999999999 99999999999999853
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=6e-31 Score=309.52 Aligned_cols=306 Identities=20% Similarity=0.335 Sum_probs=227.0
Q ss_pred CCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcce
Q 001560 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (1052)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~ 734 (1052)
.|++++|.|+|.++. + . .+.+.|.++........ ..+|+.+. .-.+|+.|.+ +-.
T Consensus 81 ~~~~~vl~d~h~~~~---~------~----~~~r~l~~l~~~~~~~~-------~~~i~~~~--~~~~p~el~~---~~~ 135 (489)
T CHL00195 81 TPALFLLKDFNRFLN---D------I----SISRKLRNLSRILKTQP-------KTIIIIAS--ELNIPKELKD---LIT 135 (489)
T ss_pred CCcEEEEecchhhhc---c------h----HHHHHHHHHHHHHHhCC-------CEEEEEcC--CCCCCHHHHh---cee
Confidence 478999999999872 1 1 23333444333332221 23333333 2467777775 445
Q ss_pred eeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCccccccccccccc
Q 001560 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 814 (1052)
Q Consensus 735 ~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~e 814 (1052)
.+.+|.|+.+|+.++++.+....+...++..++.++..+.|++..+++.++.++.... . .++.+
T Consensus 136 ~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~--~--------------~~~~~ 199 (489)
T CHL00195 136 VLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY--K--------------TIDEN 199 (489)
T ss_pred EEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--C--------------CCChh
Confidence 7899999999999999988876677889999999999999999999999888754211 0 12222
Q ss_pred ccccccccccccccccccccccCCCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhH
Q 001560 815 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHI 894 (1052)
Q Consensus 815 Df~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 894 (1052)
++...++.......+.... ....+...|++++|++.+|+.+.+.... +.......|+++++|+|||||||||||++
T Consensus 200 ~~~~i~~~k~q~~~~~~~l-e~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTll 275 (489)
T CHL00195 200 SIPLILEEKKQIISQTEIL-EFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLT 275 (489)
T ss_pred hHHHHHHHHHHHHhhhccc-cccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHH
Confidence 2111111111000000001 1112357899999999999999876542 34455677889999999999999999999
Q ss_pred HHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCC-CCcccchhhhhccccccc
Q 001560 895 VGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH-DNTGVTDRVVNQVSSTSY 973 (1052)
Q Consensus 895 A~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~-~~~~~~~r~v~~~~~~~~ 973 (1052)
|+++|++++.+|+.+++++++++|+|+++.+++++|+.|+..+||||||||||+++.++.. +..+...|++++
T Consensus 276 AkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~------ 349 (489)
T CHL00195 276 AKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLAT------ 349 (489)
T ss_pred HHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHH------
Confidence 9999999999999999999999999999999999999999999999999999999886543 344566777777
Q ss_pred eeeeeeeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecC
Q 001560 974 LFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSF 1044 (1052)
Q Consensus 974 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~ 1044 (1052)
||+.|++ ...+|+||||||+ |+||||+.+++++
T Consensus 350 ------------------------------------lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~l 391 (489)
T CHL00195 350 ------------------------------------FITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDL 391 (489)
T ss_pred ------------------------------------HHHHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCC
Confidence 8898875 3458999999999 9999999999999
Q ss_pred Ccccc
Q 001560 1045 IIFLI 1049 (1052)
Q Consensus 1045 p~~~~ 1049 (1052)
|+.+.
T Consensus 392 P~~~e 396 (489)
T CHL00195 392 PSLEE 396 (489)
T ss_pred cCHHH
Confidence 99764
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=274.05 Aligned_cols=173 Identities=35% Similarity=0.522 Sum_probs=160.5
Q ss_pred CCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhh
Q 001560 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1052)
Q Consensus 838 ~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~ 917 (1052)
.+..+|+-+||++...+.+++.+++|.+||++|..+|+..|.|+|||||||||||.+|+++|....+.|+.++++++..+
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhh
Q 001560 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILV 997 (1052)
Q Consensus 918 yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 997 (1052)
|+|+..+-+|++|-.|+..+|+|+|.||||++++.|..++.| .|.-+..
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g-gdsevqr------------------------------ 269 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG-GDSEVQR------------------------------ 269 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC-ccHHHHH------------------------------
Confidence 999999999999999999999999999999999999876555 3333332
Q ss_pred hhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 998 NFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 998 ~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
+|.+||+++||++..+++-||+|||| ||||+||.|.|+.|+.+-
T Consensus 270 --------tmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 270 --------TMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred --------HHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHH
Confidence 56679999999999999999999999 999999999999999764
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=298.73 Aligned_cols=166 Identities=30% Similarity=0.535 Sum_probs=156.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
.+.|+|+-|.++.|++|.+.++ .++.|..|.++|-+.|+|+||+||||||||+||||+|.+.+.||+...++++-..|+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 5789999999999999999998 479999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhhh
Q 001560 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNF 999 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 999 (1052)
|...+.+|++|+.|++.+||||||||+|+++++|......+....+||
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQ-------------------------------- 426 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQ-------------------------------- 426 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHH--------------------------------
Confidence 999999999999999999999999999999999987655566556666
Q ss_pred cccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 1000 LISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 1000 ~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
||.+|||+....||+||+|||+ ||||||++|.++.||+.
T Consensus 427 ----------LLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 427 ----------LLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVR 474 (752)
T ss_pred ----------HHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcc
Confidence 9999999999999999999999 99999999999999975
No 16
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-30 Score=292.57 Aligned_cols=227 Identities=22% Similarity=0.315 Sum_probs=196.5
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v 627 (1052)
.....|+++.|.|++++++.+-+..+-. +..|.++|...|+||||+||||||||.|||++|.+.+ .++++.
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkd---P~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~------VPFF~~ 368 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKD---PTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG------VPFFYA 368 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcC---cHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC------CCeEec
Confidence 4466788999999999998776666644 5589999999999999999999999999999999988 889999
Q ss_pred ecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCc
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
+.+++...++|.-.++++++|..|+.++||||||||||.+.+++..... ....+.+++|+..||++....
T Consensus 369 sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~----~y~kqTlNQLLvEmDGF~qNe------ 438 (752)
T KOG0734|consen 369 SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ----HYAKQTLNQLLVEMDGFKQNE------ 438 (752)
T ss_pred cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH----HHHHHHHHHHHHHhcCcCcCC------
Confidence 9999988888888899999999999999999999999999865543222 145578888999999987653
Q ss_pred CcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~ 787 (1052)
+|+||++||.++.||++|.|||||++++.+|.||...|.+||+.++.+..+. .+.+...||+-|.||+++||.+++..
T Consensus 439 -GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 439 -GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQ 516 (752)
T ss_pred -ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999875432 23357889999999999999999999
Q ss_pred HHHHHHhh
Q 001560 788 TVHAAVGR 795 (1052)
Q Consensus 788 A~~~a~~r 795 (1052)
|+..|...
T Consensus 517 AAlkAa~d 524 (752)
T KOG0734|consen 517 AALKAAVD 524 (752)
T ss_pred HHHHHHhc
Confidence 98766544
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-31 Score=277.40 Aligned_cols=172 Identities=31% Similarity=0.495 Sum_probs=159.9
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
+..+|.|++|++...+.+++.+++|+.||+.|..+|+.+|.|++|||+||||||.||+|+|+.....|+.+-+++|+.+|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVN 998 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 998 (1052)
.|+..+-+|++|+.|...+|+|+||||||++..+|-..+++..+.+-.
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQr-------------------------------- 307 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQR-------------------------------- 307 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHH--------------------------------
Confidence 999999999999999999999999999999999997655554444333
Q ss_pred hcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 999 FLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 999 ~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
+|.+||+++||+.++.+|-||||||+ ||||+||.|.|++||...
T Consensus 308 -------tmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~T 360 (440)
T KOG0726|consen 308 -------TMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360 (440)
T ss_pred -------HHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhh
Confidence 45669999999999999999999999 999999999999999754
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=270.10 Aligned_cols=171 Identities=31% Similarity=0.504 Sum_probs=158.4
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
+.++|.|++|..+..+.+++.+++|+-+|+.|.++|+.++.|+|+|||||||||.+|+++|+..+.-||.+-+++|+.+|
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky 251 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 251 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVN 998 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 998 (1052)
+|+..+-+|++|+.|+..+.||+||||||++.+.|-.++.+...++-.
T Consensus 252 vgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqr-------------------------------- 299 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQR-------------------------------- 299 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHH--------------------------------
Confidence 999999999999999999999999999999999886554443333322
Q ss_pred hcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 999 FLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 999 ~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
+|.+|++++||+..+.++-|++|||| ||||+|+.+.|.+|+.|
T Consensus 300 -------tmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 300 -------TMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred -------HHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccc
Confidence 46669999999999999999999999 99999999999999987
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.5e-30 Score=278.15 Aligned_cols=262 Identities=21% Similarity=0.256 Sum_probs=213.7
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEe
Q 001560 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1052)
Q Consensus 549 ~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~ 628 (1052)
.....+++.|+..+++-+.+.+ +++..-+++|.....|. ++||++||||||||+||+|+|.+++ ..|+.|+
T Consensus 207 p~ikW~DIagl~~AK~lL~EAV--vlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~------tTFFNVS 277 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAV--VLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECG------TTFFNVS 277 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHH--hhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhc------CeEEEec
Confidence 3455678888988888777754 44444567888766665 4599999999999999999999998 7788999
Q ss_pred cccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcC
Q 001560 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1052)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1052)
.+.+..++.|+.++.++-+|+.|+-++|++|||||||+|++++... ...+++.++...|+-.||+....... ..
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~---~k 351 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLEN---SK 351 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhcccccccc---ce
Confidence 9999999999999999999999999999999999999999765433 34466778999999999998765432 12
Q ss_pred cEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 001560 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A 788 (1052)
.|+|+|+||-|++||.+|+| ||.+.|++|.|+.+.|..+++..++.... .++..++.|+..++||+|+||.++|+.|
T Consensus 352 ~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 352 VVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVEL-DDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred eEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccC-CCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 48999999999999999999 99999999999999999999988875332 3445689999999999999999999999
Q ss_pred HHHHHhhhcccCCc------cccccccccccccccccccccccccc
Q 001560 789 VHAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAM 828 (1052)
Q Consensus 789 ~~~a~~r~~~~~~~------~~~~~~~~lt~eDf~~Al~~~~P~~l 828 (1052)
...+++|....... ........++.+||+.|+....|+..
T Consensus 429 sm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 429 SMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 99999876532110 00111245889999999999888643
No 20
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.9e-30 Score=310.33 Aligned_cols=387 Identities=21% Similarity=0.284 Sum_probs=290.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...|.+++|++..++.+++.+ ++.-.+++.|..+++.||+|+|++||||||||..|+++|..+......+.+ ..-..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmV--l~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisf-fmrkg 337 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMV--LLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISF-FMRKG 337 (1080)
T ss_pred ccCccccccHHHHHHHHHHHH--HhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccch-hhhcC
Confidence 566889999999999999865 333346779999999999999999999999999999999998765544332 22344
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
.+..++++|+.++.++.+|++|+.++|+|+|+||||.|++.++..+.. ....+...|+.+|+++..+ |.
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEq----ih~SIvSTLLaLmdGldsR-------gq 406 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQ----IHASIVSTLLALMDGLDSR-------GQ 406 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHH----hhhhHHHHHHHhccCCCCC-------Cc
Confidence 556678999999999999999999999999999999999876443221 2236777888899987664 46
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
|+||++||+++.++++++|+|||++.++|+.|+.+.|.+|+..+..++...++...+..+|..|.||.++||+.+|..|+
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988888777788889999999999999999999999999
Q ss_pred HHHHhhhcccCCcc-----ccccccccccccccccccccccccccccccc-ccCCCCCCccccccchhHHHHHHHHh---
Q 001560 790 HAAVGRYLHSDSSF-----EKHIKPTLVRDDFSQAMHEFLPVAMRDITKT-SAEGGRSGWDDVGGLTDIQNAIKEMI--- 860 (1052)
Q Consensus 790 ~~a~~r~~~~~~~~-----~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~-~~~~~~~~~~~i~g~~~vk~~l~~~i--- 860 (1052)
..++.+..+..... .......+...||..|+....|++.|..... .|.. ....- +.+.......++..+
T Consensus 487 l~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~-~~~~~-ll~~~~~~~~iq~~~~va 564 (1080)
T KOG0732|consen 487 LIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLS-TYLKP-LLPFQDALEDIQGLMDVA 564 (1080)
T ss_pred hhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCC-cceec-ccchHHHHHHhhcchhHH
Confidence 99988765432211 1112234778999999999999888753322 2211 00111 221222222222111
Q ss_pred ----------hcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc-CCeEEEeechhhhhhh-hcccHHHHHH
Q 001560 861 ----------ELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNKY-IGASEQAVRD 928 (1052)
Q Consensus 861 ----------~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~-~~~~i~v~~s~l~~~y-vGese~~ir~ 928 (1052)
.+..+..+.+-...+--+..+++.|..|.|-+.+..++-+.+ +.+......+.++..- .+..+..+..
T Consensus 565 ~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~ 644 (1080)
T KOG0732|consen 565 SSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVH 644 (1080)
T ss_pred hhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHH
Confidence 111111011001111223458889999999999999877666 8888888888777644 5556788999
Q ss_pred HHHHHhcCCCEEEEEeCCCccCCc
Q 001560 929 IFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 929 lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
+|.+|+...|||+||-.+|.-...
T Consensus 645 i~~eaR~~~psi~~ip~~d~w~~~ 668 (1080)
T KOG0732|consen 645 IFMEARKTTPSIVFIPNVDEWARV 668 (1080)
T ss_pred HHHHHhccCCceeeccchhhhhhc
Confidence 999999999999999888876543
No 21
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=272.89 Aligned_cols=168 Identities=32% Similarity=0.597 Sum_probs=156.8
Q ss_pred CCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhh
Q 001560 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1052)
Q Consensus 838 ~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~ 917 (1052)
.+.+.|+|+.|++..|+.|++.+.+|.++|++|.. ...+-+|+||||||||||+.||+|+|.+.+-.|++|+.++|+++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 35799999999999999999999999999999976 34667899999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhh
Q 001560 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILV 997 (1052)
Q Consensus 918 yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 997 (1052)
|.|++|+-++.+|+.||..+|+|+||||||++++.|+.+.+++.+|+-.+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTE------------------------------ 255 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTE------------------------------ 255 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHH------------------------------
Confidence 99999999999999999999999999999999999998888888888887
Q ss_pred hhcccccchhHHHhhhhcCCccc-CCeEEEEeCCC-------CCCCcceEEEecCCccc
Q 001560 998 NFLISACPCFQQFLTELDGVEVL-TGVFVFAATRL-------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 998 ~~~~~~~~~~~~lL~~ldg~~~~-~~v~vi~aTn~-------r~gRfd~~i~~~~p~~~ 1048 (1052)
||-+|.|+... ++|+|++|||- ..+||++.||++||+..
T Consensus 256 ------------fLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~ 302 (439)
T KOG0739|consen 256 ------------FLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 302 (439)
T ss_pred ------------HHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHH
Confidence 99999999754 58999999999 66899999999999853
No 22
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.96 E-value=8.8e-29 Score=308.44 Aligned_cols=351 Identities=18% Similarity=0.250 Sum_probs=238.4
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc----eeeEEEEe
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----VAHIVFVC 628 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----~~~v~~v~ 628 (1052)
++.+.|.+..++.+++.| .+ ....++||+||||||||++++++|+.+...... ...++.++
T Consensus 181 l~~~igr~~ei~~~~~~L---~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 181 IDPLIGREDELERTIQVL---CR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCcccCcHHHHHHHHHHH---hc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 445677887777655433 11 123569999999999999999999998432211 25677888
Q ss_pred ccccc--CCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccC
Q 001560 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1052)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1052)
+..+. ..+.++.++.++++|+++.++.+.||||||+|.+++.+...++. . ...+.|...+..
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~----~~~~~L~~~l~~---------- 309 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--M----DASNLLKPALSS---------- 309 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--H----HHHHHHHHHHhC----------
Confidence 88776 46778999999999999988889999999999998643222211 1 123334443321
Q ss_pred cCcEEEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhh----ccCCCCHHHHHHHhhhcCCCC
Q 001560 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGYD 777 (1052)
Q Consensus 707 ~~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~----~~~~~sd~~l~~La~~teG~s 777 (1052)
+.+.+|++|+..+ ..|+++.| ||. .++++.|+.+++.+||+..... ++..++++.+..++..+..|-
T Consensus 310 -g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 310 -GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred -CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 2589999999743 57899999 997 7999999999999999976653 346689999999988887764
Q ss_pred H-----HHHHHHHHHHHHHHHhhhcccCCccccccccccccccccccccccccccccccccccc----CCCCCCcccccc
Q 001560 778 A-----YDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVGG 848 (1052)
Q Consensus 778 ~-----~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~----~~~~~~~~~i~g 848 (1052)
+ ...-.+++.|+.....+ .. ......++.+|+..++...+......+..... .........+.|
T Consensus 386 ~~r~~P~kai~lld~a~a~~~~~--~~-----~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~G 458 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASFRLR--PK-----AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFG 458 (731)
T ss_pred ccccCCHHHHHHHHHhhhhhhcC--cc-----cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeC
Confidence 4 33456667665332211 10 01224588888888888765432211110000 001123456788
Q ss_pred chhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhh------------
Q 001560 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN------------ 916 (1052)
Q Consensus 849 ~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~------------ 916 (1052)
++++.+.+.+.+.... .....+-++...+||+||||||||++|+++|+.++.+++.++++++.+
T Consensus 459 Q~~ai~~l~~~i~~~~----~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~ 534 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSR----AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP 534 (731)
T ss_pred cHHHHHHHHHHHHHHh----cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC
Confidence 8888888877765320 000111234456899999999999999999999999999999988743
Q ss_pred hhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 917 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 917 ~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
.|+|..+ ...+.+..+..+.+||||||+|++.+
T Consensus 535 gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~ 567 (731)
T TIGR02639 535 GYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP 567 (731)
T ss_pred CCcccch--hhHHHHHHHhCCCeEEEEechhhcCH
Confidence 2444332 23345555667788999999999854
No 23
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.8e-30 Score=263.33 Aligned_cols=171 Identities=32% Similarity=0.481 Sum_probs=159.7
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
+...|+||||++...+.|.+.+.+|..|++.|.++|+++|.|+|+|||||||||++||+.|.+.+..|..+-++.++..|
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 245 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVN 998 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 998 (1052)
+|+..+-+|+.|..|+..+|+|+||||+|+++.+|-.+ ....+|-+..
T Consensus 246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDS-ek~GDREVQR------------------------------- 293 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS-EKAGDREVQR------------------------------- 293 (424)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccc-cccccHHHHH-------------------------------
Confidence 99999999999999999999999999999999998643 3345565554
Q ss_pred hcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 999 FLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 999 ~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
+|.+||+++||+.+.+.|-||+|||| |.||+||.|.|++|+.+
T Consensus 294 -------TMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~ 345 (424)
T KOG0652|consen 294 -------TMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEE 345 (424)
T ss_pred -------HHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChH
Confidence 57779999999999999999999999 99999999999999876
No 24
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.5e-29 Score=290.15 Aligned_cols=261 Identities=23% Similarity=0.315 Sum_probs=212.8
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
+..++++||+++++.+|.+.|..-+ ..+.+|.. |+.+..|||||||||||||.+|||+|-++. ..+..|..
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL--~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcs------L~FlSVKG 738 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPL--KHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECS------LNFLSVKG 738 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcc--cChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhce------eeEEeecC
Confidence 5667899999999999999885432 34456654 566677899999999999999999999998 67888888
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
-+|...|.|+.++.++++|+.|+..+|||||+||+|+++|.|+....++ ....++..+|+..+|++..... ..
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG--GVMDRVVSQLLAELDgls~~~s-----~~ 811 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG--GVMDRVVSQLLAELDGLSDSSS-----QD 811 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc--ccHHHHHHHHHHHhhcccCCCC-----Cc
Confidence 8999999999999999999999999999999999999999765544332 3455889999999999875321 26
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCC-HHHHHHHHHHHHhhccCCCCHHHHHHHhhhc-CCCCHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPA-ASERKAILEHEIQRRSLECSDEILLDVASKC-DGYDAYDLEILVDR 787 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd-~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t-eG~s~~DL~~Lv~~ 787 (1052)
|+|||+||+|+.|||+|+|||||++-+++.+++ .+.+..+|+...++..++- +..+..+|+.| ..|+|+|+-.+|..
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLde-dVdL~eiAk~cp~~~TGADlYsLCSd 890 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDE-DVDLVEIAKKCPPNMTGADLYSLCSD 890 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCC-CcCHHHHHhhCCcCCchhHHHHHHHH
Confidence 999999999999999999999999999998885 5668889998887655442 22477888887 67999999999999
Q ss_pred HHHHHHhhhcccCCc------ccccccccccccccccccccccccc
Q 001560 788 TVHAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVA 827 (1052)
Q Consensus 788 A~~~a~~r~~~~~~~------~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1052)
|...|+.|....-.. ........++++||.++++++.|+.
T Consensus 891 A~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 891 AMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 999999987632111 1122345689999999999999863
No 25
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-30 Score=279.33 Aligned_cols=167 Identities=33% Similarity=0.535 Sum_probs=154.5
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
+...|+||.|+.++|+.|++.+.+|+.+|+.|+.. .+|-+|+|++||||||||+||+|+|.+|+..|+.|+.+.+.++|
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 45899999999999999999999999999999873 57788999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCC-CcccchhhhhccccccceeeeeeeccCcccCccccchhhhh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILV 997 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 997 (1052)
-|++|+.+|-+|+.|+..+|++|||||||+|+.+||.. ..++.+|+-++
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsE------------------------------ 335 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSE------------------------------ 335 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHH------------------------------
Confidence 99999999999999999999999999999999999875 44677788788
Q ss_pred hhcccccchhHHHhhhhcCCccc-CC---eEEEEeCCC-------CCCCcceEEEecCCccc
Q 001560 998 NFLISACPCFQQFLTELDGVEVL-TG---VFVFAATRL-------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 998 ~~~~~~~~~~~~lL~~ldg~~~~-~~---v~vi~aTn~-------r~gRfd~~i~~~~p~~~ 1048 (1052)
||-+|||+... ++ |+|+||||. ..+||.+.||++||+.+
T Consensus 336 ------------LLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~ 385 (491)
T KOG0738|consen 336 ------------LLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAE 385 (491)
T ss_pred ------------HHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHH
Confidence 99999999743 34 999999999 77899999999999986
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=265.91 Aligned_cols=226 Identities=22% Similarity=0.327 Sum_probs=198.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
....+++.|++.+++.+++. ++|+-..+++|.....|. +++||||||||||+.||+++|-+.+ ..++.++.
T Consensus 129 NVkWsDVAGLE~AKeALKEA--VILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAn------STFFSvSS 199 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEA--VILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEAN------STFFSVSS 199 (439)
T ss_pred CCchhhhccchhHHHHHHhh--eeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcC------CceEEeeh
Confidence 34567888999999999884 467777889998766555 5699999999999999999999977 67888999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
++|..++.|+.+++++++|+.|+.+.|+||||||+|++++.+++. .+++++++...|+-.|.+...... .
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en----EseasRRIKTEfLVQMqGVG~d~~------g 269 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN----ESEASRRIKTEFLVQMQGVGNDND------G 269 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC----chHHHHHHHHHHHHhhhccccCCC------c
Confidence 999999999999999999999999999999999999999765543 345566788888888888765443 5
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
|+|+++||-|+.||.+++| ||++.|++|.|+...|..+++.++......+++.++..|++.|+||+++||..+++.|+
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999999999 99999999999999999999999998888899999999999999999999999999998
Q ss_pred HHHHhhh
Q 001560 790 HAAVGRY 796 (1052)
Q Consensus 790 ~~a~~r~ 796 (1052)
.+.+++.
T Consensus 348 mePvRkv 354 (439)
T KOG0739|consen 348 MEPVRKV 354 (439)
T ss_pred hhhHHHh
Confidence 8777654
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=1.9e-28 Score=288.46 Aligned_cols=243 Identities=21% Similarity=0.284 Sum_probs=202.1
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+++++|++..++.+.++...+. ..+..+|+++|+|+||+||||||||++|+++|++++ .+++.+++
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~-----~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~------~~~~~l~~ 292 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS-----KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ------LPLLRLDV 292 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh-----HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEEEh
Confidence 4567899999988888877554321 123567889999999999999999999999999988 78899999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
+.+.+.+.|+.+..++++|..+...+||||||||+|.+++.+... .......++...|+..+++.. .+
T Consensus 293 ~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~~~---------~~ 360 (489)
T CHL00195 293 GKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSEKK---------SP 360 (489)
T ss_pred HHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhcCC---------Cc
Confidence 999999999999999999999999999999999999998632211 122344567777777776422 15
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCC-CCHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~-~sd~~l~~La~~teG~s~~DL~~Lv~~A 788 (1052)
++||+|||+++.+|++++|+|||+..++++.|+.++|.+||+.++.+.... ..+..+..+|..|+||+++||+.+|.+|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876543 3456789999999999999999999999
Q ss_pred HHHHHhhhcccCCcccccccccccccccccccccccccc
Q 001560 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1052)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1052)
.+.+..+. ..++.+||..|+..+.|.+
T Consensus 441 ~~~A~~~~------------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 441 MYIAFYEK------------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHcC------------CCcCHHHHHHHHHhcCCCc
Confidence 98876541 3589999999999998864
No 28
>PF09262 PEX-1N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015342 This domain adopts a double psi beta-barrel fold, similar in structure to the Cdc48 N-terminal domain. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; GO: 0005524 ATP binding, 0007031 peroxisome organization, 0005777 peroxisome; PDB: 1WLF_A.
Probab=99.96 E-value=7.4e-30 Score=225.19 Aligned_cols=77 Identities=48% Similarity=0.830 Sum_probs=62.2
Q ss_pred ceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEeEEecCceEEEEEEcccCCCCC---eEEecCCCEEEEcc
Q 001560 94 ATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKP---VVQLVPGTEVAVAP 170 (1052)
Q Consensus 94 ~~~v~veP~t~dDWEilel~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~---~~~l~~~tev~vaP 170 (1052)
|++|+|||+|+|||||||+||+|||++||+|+|||++||+||||++++++++|+|.++.|++. ||||+++|||+|||
T Consensus 1 A~~V~veP~T~dDWEIlEl~A~~lE~~lL~QiRvv~~~~~~~v~v~~~~~i~~~V~~i~p~~~~~~~~~L~~~TEv~VaP 80 (80)
T PF09262_consen 1 AKSVEVEPLTSDDWEILELHAEFLEDQLLSQIRVVFPGQVFPVWVSQNTVIKFKVVSIEPSSSAEGCARLSPDTEVIVAP 80 (80)
T ss_dssp -SEEEEEESSHHHHHHHHHS-SSHHHHHHHH--EE-TT-EEEEESSSS-EEEEEEEEEES--S---SEE--TT-EEEE--
T ss_pred CcEEEEEcCCccHHHHHHHhHHHHHHHHHHhheeecCCCEEEEEEcCCeEEEEEEEEccCCCCceeEEEeCCCcEEEECC
Confidence 789999999999999999999999999999999999999999999999999999999999985 99999999999998
No 29
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.96 E-value=3e-28 Score=281.22 Aligned_cols=249 Identities=21% Similarity=0.329 Sum_probs=204.3
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEe
Q 001560 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1052)
Q Consensus 549 ~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~ 628 (1052)
.+..+.+++|++..++++.+.+...+. .+.+|...|+.+|+++||+||||||||++|+++|++++ .+++.+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~--~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~ 211 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLT--CPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVV 211 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhc--CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEe
Confidence 356788999999999999998864332 45688899999999999999999999999999999987 6677788
Q ss_pred cccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcC
Q 001560 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1052)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1052)
++.+...+.+...+.++++|..|...+|+||||||+|.+++.+.+...... ......+..|+..++++... .
T Consensus 212 ~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d-~~~~r~l~~LL~~ld~~~~~-------~ 283 (398)
T PTZ00454 212 GSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGAD-REVQRILLELLNQMDGFDQT-------T 283 (398)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCcc-HHHHHHHHHHHHHhhccCCC-------C
Confidence 888877788888888999999999999999999999999875543332222 22334445555666655432 2
Q ss_pred cEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 001560 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A 788 (1052)
++.+|++||+++.+|++++|+|||+..|+++.|+.++|.+||+.++.+.++. .+..+..++..++||+++||+.+|.+|
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA 362 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEA 362 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999988765543 334588999999999999999999999
Q ss_pred HHHHHhhhcccCCcccccccccccccccccccccccc
Q 001560 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1052)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1052)
...|+.+ ....++.+||.+|++....
T Consensus 363 ~~~A~r~-----------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 363 GMQAVRK-----------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHc-----------CCCccCHHHHHHHHHHHHh
Confidence 9988876 2256999999999887543
No 30
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=252.90 Aligned_cols=247 Identities=22% Similarity=0.337 Sum_probs=208.1
Q ss_pred ccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEe
Q 001560 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1052)
Q Consensus 549 ~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~ 628 (1052)
.++.+.-++|++.+++++++-|.. +-..+++|..+|+..|.|+|||||||||||.||+++|.+.. ..++.++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeL--PvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~------c~firvs 213 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIEL--PVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVS 213 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhc--cccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc------eEEEEec
Confidence 356777899999999999997743 34578899999999999999999999999999999999876 7789999
Q ss_pred cccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcC
Q 001560 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1052)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1052)
.++|..++.|+-.+..+++|-.|+.++|+|+|+||||++.+.+.+.....+++....+++ |++.+|++....
T Consensus 214 gselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmle-llnqldgfeatk------- 285 (404)
T KOG0728|consen 214 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLE-LLNQLDGFEATK------- 285 (404)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHH-HHHhcccccccc-------
Confidence 999999999999999999999999999999999999999877666555545544444443 445567665543
Q ss_pred cEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 001560 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A 788 (1052)
++-+|.+||+.+-+|++|+|+||+++.|+||+|+.+.|.+||+.+-++.++. ..-.+..+|....|.++++++..|.+|
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhh
Confidence 5999999999999999999999999999999999999999999777654432 112478999999999999999999999
Q ss_pred HHHHHhhhcccCCcccccccccccccccccccccc
Q 001560 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
-..|++.. +..+|++||+-|+...
T Consensus 365 gm~alrer-----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 365 GMYALRER-----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred hHHHHHHh-----------hccccHHHHHHHHHHH
Confidence 88887652 2568999999887764
No 31
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-28 Score=291.30 Aligned_cols=250 Identities=20% Similarity=0.290 Sum_probs=214.3
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v 627 (1052)
+....|.++.|.+++++++.+.+..+-. ++.|..+|...|+|+||+||||||||.||||+|.+.+ .+++.+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKN---P~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg------VPF~sv 375 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKN---PEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG------VPFFSV 375 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcC---HHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC------Cceeee
Confidence 4456788999999999999998877754 5689999999999999999999999999999999988 889999
Q ss_pred ecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCc
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
+.+++.....+.-..+++++|..|+.++|||+||||||.+...+............+..+++|+..||++....
T Consensus 376 SGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~------ 449 (774)
T KOG0731|consen 376 SGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK------ 449 (774)
T ss_pred chHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC------
Confidence 99998866666667789999999999999999999999998766421122233445577888888899886542
Q ss_pred CcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~ 787 (1052)
.|+++++||+++-+|++|+|+|||+++++++.|+..+|.+|++.+++...+..++..+..+|.+|+||+|+||.++|.+
T Consensus 450 -~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ne 528 (774)
T KOG0731|consen 450 -GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNE 528 (774)
T ss_pred -cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhH
Confidence 5999999999999999999999999999999999999999999999987777666678889999999999999999999
Q ss_pred HHHHHHhhhcccCCccccccccccccccccccccccc
Q 001560 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1052)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1052)
|...+.++ ....++..||..|++...
T Consensus 529 aa~~a~r~-----------~~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 529 AALLAARK-----------GLREIGTKDLEYAIERVI 554 (774)
T ss_pred HHHHHHHh-----------ccCccchhhHHHHHHHHh
Confidence 99888776 235688889998888543
No 32
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-27 Score=293.64 Aligned_cols=353 Identities=16% Similarity=0.211 Sum_probs=233.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc----ceeeEEEEe
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~~~v~~v~ 628 (1052)
+..+.|.+..+..+++.+..- ...++||+||||||||++|+.+|..+..... ....++.++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~---------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRR---------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhcc---------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 445778888888877644321 1356899999999999999999987632210 112344444
Q ss_pred ccccc--CCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccC
Q 001560 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1052)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1052)
...+. ..+.++.+..++.++..+....++||||||+|.+++.+....+ . ..+.+.|...+..
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g---~---~d~~nlLkp~L~~---------- 313 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---Q---VDAANLIKPLLSS---------- 313 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc---H---HHHHHHHHHHHhC----------
Confidence 44443 3456788888999999887778899999999999864322111 1 1233444433321
Q ss_pred cCcEEEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHh----hccCCCCHHHHHHHhhhcCC--
Q 001560 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDG-- 775 (1052)
Q Consensus 707 ~~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~----~~~~~~sd~~l~~La~~teG-- 775 (1052)
+.+.+|++|+..+ ..|++|.| ||. .+.++.|+.+++.+||+.+.. .++..++++.+..++..+..
T Consensus 314 -g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 314 -GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred -CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 2589999999864 46999999 997 799999999999999996554 34567888888776665544
Q ss_pred ---CCHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccccccccccccccccccccC----CCCCCcccccc
Q 001560 776 ---YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGG 848 (1052)
Q Consensus 776 ---~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~----~~~~~~~~i~g 848 (1052)
+.|.....++++|+... |..+.. .....++.+|+.+.+...+......+...... -....-..++|
T Consensus 390 ~~r~lPdKaidlldea~a~~--~~~~~~-----~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViG 462 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARA--RLMPVS-----KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFG 462 (758)
T ss_pred cCccChHHHHHHHHHHHHhh--ccCccc-----ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeC
Confidence 45567778888887533 211110 11234777888877777654332221111100 00122345899
Q ss_pred chhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh-----hhhhcccH
Q 001560 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-----NKYIGASE 923 (1052)
Q Consensus 849 ~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~-----~~yvGese 923 (1052)
++++.+.+.+.+.....- ...+.++...+||+||||||||.+|+++|+.++.+|+.++++++. ++++|...
T Consensus 463 Q~~ai~~l~~~i~~~~~g----l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAG----LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred cHHHHHHHHHHHHHHhcc----ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCC
Confidence 999999998887632110 001123445799999999999999999999999999999998864 33444321
Q ss_pred H-----HHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 924 Q-----AVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 924 ~-----~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
. ....+.+..+..+.+||||||||++.+
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~ 571 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP 571 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhhhH
Confidence 1 112233444556678999999999954
No 33
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-28 Score=253.83 Aligned_cols=246 Identities=20% Similarity=0.323 Sum_probs=207.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+++++|++.+++++++.+ +++......|..+|+.||.|+|+|||||||||.+||+.|...+ +.+..+..
T Consensus 167 tE~YsDiGGldkQIqELvEAi--VLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~------aTFLKLAg 238 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAI--VLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN------ATFLKLAG 238 (424)
T ss_pred cccccccccHHHHHHHHHHHh--ccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc------chHHHhcc
Confidence 456889999999999999966 5555677889999999999999999999999999999998866 45555666
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
..|...+.|+-.+.+++.|..|...+|+|+||||+|.+..++-+.+.+++.+....+++ |+..+|++.... .
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLE-LLNQLDGFss~~-------~ 310 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLE-LLNQLDGFSSDD-------R 310 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHH-HHHhhcCCCCcc-------c
Confidence 67777888888999999999999999999999999999988888877766554444444 445577776543 4
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
|-||++||+.+-++|+|+|+||.++.|+||.|+.+.|.+|++.+.++.... ++..++.+|+.|++|+++..+.+|-+|-
T Consensus 311 vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 311 VKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred eEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehhhh
Confidence 899999999999999999999999999999999999999999777654432 3345999999999999999999999999
Q ss_pred HHHHhhhcccCCcccccccccccccccccccccc
Q 001560 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
..|++| +...++.+||..++.+.
T Consensus 390 MiALRr-----------~atev~heDfmegI~eV 412 (424)
T KOG0652|consen 390 MIALRR-----------GATEVTHEDFMEGILEV 412 (424)
T ss_pred HHHHhc-----------ccccccHHHHHHHHHHH
Confidence 988887 23568889998776553
No 34
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-28 Score=250.44 Aligned_cols=248 Identities=20% Similarity=0.328 Sum_probs=210.1
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v 627 (1052)
..+..+.+++|++..++++++.+..-+ ....+|.+.|+.||+|+|+|||||||||+|++++|+... +.++.+
T Consensus 149 kpdvsy~diggld~qkqeireavelpl--t~~~ly~qigidpprgvllygppg~gktml~kava~~t~------a~firv 220 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPL--THADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT------AAFIRV 220 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccc--hHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc------hheeee
Confidence 456678899999999999999775433 356789999999999999999999999999999999876 788999
Q ss_pred ecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCc
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
..+++..++.|+--+..+++|..|+.++|+|+||||+|.++.++-+.+.. ......+++-.|++.||++....
T Consensus 221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtg-adrevqril~ellnqmdgfdq~~------ 293 (408)
T KOG0727|consen 221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTG-ADREVQRILIELLNQMDGFDQTT------ 293 (408)
T ss_pred ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccc-ccHHHHHHHHHHHHhccCcCccc------
Confidence 99999999999999999999999999999999999999999876555433 33445566666778888887643
Q ss_pred CcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~ 787 (1052)
+|-+|.+||+.+.+||+|+|+||.++.|+||.||..++.-++.....+..+. ++..++.+..+.+..+++||..+|++
T Consensus 294 -nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 294 -NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred -ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHH
Confidence 5999999999999999999999999999999999999999999888765543 23358888889999999999999999
Q ss_pred HHHHHHhhhcccCCcccccccccccccccccccccc
Q 001560 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
|-..|++. ..-.+...||+++.+..
T Consensus 372 agm~avr~-----------nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 372 AGMLAVRE-----------NRYVVLQKDFEKAYKTV 396 (408)
T ss_pred HhHHHHHh-----------cceeeeHHHHHHHHHhh
Confidence 99888765 22457778888876653
No 35
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-28 Score=292.86 Aligned_cols=167 Identities=30% Similarity=0.517 Sum_probs=152.8
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
..+.|.|+.|.+++|+.|.|.+. .+++|+.|.++|.+.|+|+||+||||||||+||||+|.+.|.||+.+++++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 35899999999999999999998 58999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCC-C---CcccchhhhhccccccceeeeeeeccCcccCccccchh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH-D---NTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIY 994 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~-~---~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 994 (1052)
+|.....+|++|..|+..+|||+||||||+++..|++ . .++...
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e-------------------------------- 432 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDERE-------------------------------- 432 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHH--------------------------------
Confidence 9999999999999999999999999999999999952 1 122222
Q ss_pred hhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 995 ILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 995 ~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
.++++||.+|||+...++|+|+|+||| |||||||+|++++|+..
T Consensus 433 ----------~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~ 485 (774)
T KOG0731|consen 433 ----------QTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVK 485 (774)
T ss_pred ----------HHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchh
Confidence 244459999999999999999999999 99999999999999864
No 36
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-28 Score=265.34 Aligned_cols=233 Identities=22% Similarity=0.315 Sum_probs=201.2
Q ss_pred ccccccccccccchhHHHHHHHHHHHhcCCCcccccccc-CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEE
Q 001560 547 QGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTY-HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV 625 (1052)
Q Consensus 547 ~~~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~-~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~ 625 (1052)
..+..++.+++|++..++++.+.+ +++...+.+|... -+.++.||||+||||||||++|+++|++.+ +.++
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~V--ilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag------a~fI 156 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELV--ILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG------ANFI 156 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHH--hhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC------CCcc
Confidence 356778899999999999998855 4444566777433 346788999999999999999999999988 7889
Q ss_pred EEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 001560 626 FVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1052)
Q Consensus 626 ~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1052)
.++.+.+..+++|+.++..+.+|..|..-+|+|+||||+|++++.+. +...++...+...|+...|++..+.+.
T Consensus 157 nv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~-- 230 (386)
T KOG0737|consen 157 NVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSE-- 230 (386)
T ss_pred eeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCc--
Confidence 99999999999999999999999999999999999999999997652 334566778888999999988766542
Q ss_pred CcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHH
Q 001560 706 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILV 785 (1052)
Q Consensus 706 ~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv 785 (1052)
.|+|+|+||+|.++|.++.| |+++.++++.|+..+|.+||+-+++...+. ++-++..+|..|+||+|+||+.+|
T Consensus 231 ---rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC 304 (386)
T KOG0737|consen 231 ---RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELC 304 (386)
T ss_pred ---eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHH
Confidence 49999999999999999999 999999999999999999999999876554 445689999999999999999999
Q ss_pred HHHHHHHHhhhccc
Q 001560 786 DRTVHAAVGRYLHS 799 (1052)
Q Consensus 786 ~~A~~~a~~r~~~~ 799 (1052)
+.|.+..++..+..
T Consensus 305 ~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 305 RLAALRPIRELLVS 318 (386)
T ss_pred HHHhHhHHHHHHHh
Confidence 99999888877643
No 37
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=9e-28 Score=249.02 Aligned_cols=238 Identities=24% Similarity=0.340 Sum_probs=196.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
+..++++.|.+.++..+.=-+.++-.|. .|.. =.|++||||||||||||++|+++|.+.. .+++.+..
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe---~Fg~---WAPknVLFyGppGTGKTm~Akalane~k------vp~l~vka 184 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPE---RFGD---WAPKNVLFYGPPGTGKTMMAKALANEAK------VPLLLVKA 184 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChH---Hhcc---cCcceeEEECCCCccHHHHHHHHhcccC------CceEEech
Confidence 4567788899888887755555655443 3433 3478899999999999999999999987 78889999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
..|.|+++|+..+.++++++.|...+|||+||||+|.+.-.+.-.+ -...+..+.+.|+..||++.... .
T Consensus 185 t~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe---lRGDVsEiVNALLTelDgi~ene-------G 254 (368)
T COG1223 185 TELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE---LRGDVSEIVNALLTELDGIKENE-------G 254 (368)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH---hcccHHHHHHHHHHhccCcccCC-------c
Confidence 9999999999999999999999999999999999999974321111 11124478888999999887543 5
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHH-HHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE-ILVDRT 788 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~-~Lv~~A 788 (1052)
|+.|++||+++.||+++++ ||...|+|..|+.++|.+|++.++++..+.++.. ++.++..+.|++++||+ .++..|
T Consensus 255 VvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 255 VVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred eEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999887776544 89999999999999986 567778
Q ss_pred HHHHHhhhcccCCcccccccccccccccccccccc
Q 001560 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
+|.|+.. +...++.+|++.|++.-
T Consensus 332 Lh~Ai~e-----------d~e~v~~edie~al~k~ 355 (368)
T COG1223 332 LHRAIAE-----------DREKVEREDIEKALKKE 355 (368)
T ss_pred HHHHHHh-----------chhhhhHHHHHHHHHhh
Confidence 8888765 23468899999998863
No 38
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.95 E-value=2.6e-27 Score=274.69 Aligned_cols=250 Identities=23% Similarity=0.349 Sum_probs=203.1
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
+..+.+++|++..++++.+.+...+ ..+..|...|+.+|+++|||||||||||++|+++|++++ .+++.+++
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl--~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~ 198 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPL--KKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 198 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC------CCEEEeeh
Confidence 4567799999999999999875432 245678889999999999999999999999999999987 67888999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
+.+...+.+...+.++.+|..+.++.|+||||||+|.+++.+.+....... .....+..|+..++.+... ++
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~-~~~~~l~~lL~~ld~~~~~-------~~ 270 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDR-EVQRTLMQLLAEMDGFDPR-------GN 270 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccH-HHHHHHHHHHHhccccCCC-------CC
Confidence 999888888888889999999999999999999999998755433222222 2223333444444443322 25
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+.||+|||.++.+|++++|+|||+..+++++|+.++|.+||+.++.+..+. .+..+..+|..|+||+++||+.+|++|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765443 2345889999999999999999999999
Q ss_pred HHHHhhhcccCCcccccccccccccccccccccccccc
Q 001560 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1052)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1052)
..|+.+ ....++.+||.+|+....+..
T Consensus 350 ~~a~~~-----------~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 350 MFAIRD-----------DRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHc-----------CCCCcCHHHHHHHHHHHhccc
Confidence 888765 224689999999999877654
No 39
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-28 Score=256.10 Aligned_cols=248 Identities=21% Similarity=0.328 Sum_probs=204.4
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v 627 (1052)
....++.+++|++.+++++++.+. ++...+++|...|+.||.||+|||+||||||.||+++|+... +.|..+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvE--LPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS------ATFlRv 250 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVE--LPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS------ATFLRV 250 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhc--CCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc------hhhhhh
Confidence 345678899999999999999664 344578899999999999999999999999999999999876 777888
Q ss_pred ecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCc
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
-.++|..++.|+-.+..+++|..|..++|+|+||||||.+..++.+.......+..+.++ .|++.+|++..+
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmL-ELLNQldGFdsr------- 322 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML-ELLNQLDGFDSR------- 322 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHH-HHHHhccCcccc-------
Confidence 889999999999999999999999999999999999999988777665433322222223 344555655543
Q ss_pred CcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~ 787 (1052)
+.|-||.+||+.+++||+|.|+||+++.|+|+.||...+..|+..+..+..+. .+..++.+...-+.++++||+.+|.+
T Consensus 323 gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHH
Confidence 46999999999999999999999999999999999999999998766654432 22347888888889999999999999
Q ss_pred HHHHHHhhhcccCCcccccccccccccccccccccc
Q 001560 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
|-..|++.. +..++.+||.+|.+..
T Consensus 402 aGllAlRer-----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 402 AGLLALRER-----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred HhHHHHHHH-----------HhhccHHHHHHHHHHH
Confidence 998887653 2458999999987654
No 40
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=4.5e-28 Score=251.26 Aligned_cols=165 Identities=31% Similarity=0.471 Sum_probs=148.6
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
...++|++|+++.|+.++-+++ .+..|+.|..|. |+++|||||||||||++|+++|++...||+.+++.++++.|+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 5789999999999999876665 367888887775 568999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCC-cccchhhhhccccccceeeeeeeccCcccCccccchhhhhh
Q 001560 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN-TGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVN 998 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~-~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 998 (1052)
|+..+.++++|++|+..+|||+||||+|+++.+|+.+. .|-...+||.
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNA------------------------------- 241 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNA------------------------------- 241 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHH-------------------------------
Confidence 99999999999999999999999999999999887642 3445567777
Q ss_pred hcccccchhHHHhhhhcCCcccCCeEEEEeCCC-------CCCCcceEEEecCCccccc
Q 001560 999 FLISACPCFQQFLTELDGVEVLTGVFVFAATRL-------EFFHYNVLLFCSFIIFLIL 1050 (1052)
Q Consensus 999 ~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~-------r~gRfd~~i~~~~p~~~~~ 1050 (1052)
|||+|||+....||..|||||+ ...||...|.|.||+.|-.
T Consensus 242 -----------LLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr 289 (368)
T COG1223 242 -----------LLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEER 289 (368)
T ss_pred -----------HHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHH
Confidence 9999999999999999999999 6689999999999998753
No 41
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=268.55 Aligned_cols=246 Identities=20% Similarity=0.320 Sum_probs=200.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+.+++|++..++++.+.+...+ ..+.+|..+++.+|.++|||||||||||++|+++|+++. ..++.+.+
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl--~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi~V~~ 250 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPL--THPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------ATFLRVVG 250 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhh--hCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CCEEEEec
Confidence 4567889999999999999886432 356688889999999999999999999999999999987 56777888
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
+.+.+.+.+.....++.+|..|.++.|+||||||+|.++..+.+........ ....+..|+..++++... .+
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e-~qr~ll~LL~~Ldg~~~~-------~~ 322 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKE-IQRTMLELLNQLDGFDSR-------GD 322 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHH-HHHHHHHHHHHHhhhccc-------CC
Confidence 8888888888888899999999999999999999999986544332222222 223333455556655432 25
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+.||++||+++.+|+++.|+|||++.|+|+.|+.++|.+||+.++.+..+. .+..+..++..++||+++||+.+|..|.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~ 401 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAG 401 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765432 2335889999999999999999999999
Q ss_pred HHHHhhhcccCCcccccccccccccccccccccc
Q 001560 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
..|..+. ...++.+||..|+...
T Consensus 402 ~~Alr~~-----------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 402 LLALRER-----------RMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHhc-----------CCccCHHHHHHHHHHH
Confidence 8887662 2568999999998774
No 42
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-26 Score=275.46 Aligned_cols=248 Identities=25% Similarity=0.354 Sum_probs=211.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+.+++|++...+.+.+.+...+. .+..|...++.++.++|||||||||||++|+++|.+++ .+++.++.
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~--~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~ 309 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLK--RPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKG 309 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhh--ChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeC
Confidence 45677889999998888888765432 34457777889999999999999999999999999887 88999999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
+++.+++.|++++.++++|..|+..+||||||||+|++++.+...... ...++...|+..++...... +
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~----~~~r~~~~lL~~~d~~e~~~-------~ 378 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG----SGRRVVGQLLTELDGIEKAE-------G 378 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch----HHHHHHHHHHHHhcCCCccC-------c
Confidence 999999999999999999999999999999999999999765443321 12467788888888765543 5
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCC-CCHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~-~sd~~l~~La~~teG~s~~DL~~Lv~~A 788 (1052)
|+||++||+++.+|++++|+|||+..+++++||.++|.+|++.++.+.... ..+.++..++..++||+++||..+|++|
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea 458 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREA 458 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999865554 4556789999999999999999999999
Q ss_pred HHHHHhhhcccCCccccccccccccccccccccccccc
Q 001560 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1052)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1052)
...+..+.. ...++.+||..|++...|+
T Consensus 459 ~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 459 ALEALREAR----------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHhc----------cCCccHHHHHHHHHhcCCC
Confidence 999887742 2468999999999986664
No 43
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=3.1e-26 Score=286.51 Aligned_cols=259 Identities=22% Similarity=0.318 Sum_probs=210.9
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+.+++|++..++.+.+.+... ...+..+...+..+|+++|||||||||||++|+++|.+++ .+++.+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~--~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~------~~fi~v~~ 520 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWP--LKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG------ANFIAVRG 520 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhh--hhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEeh
Confidence 346778999999998888876543 2356688888999999999999999999999999999987 77889999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
+++...+.|+.++.++.+|..|+...|+||||||+|.+++.+.... ......++...|+..+++..... +
T Consensus 521 ~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~~~-------~ 590 (733)
T TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQELS-------N 590 (733)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccCCC-------C
Confidence 9999999999999999999999999999999999999987543221 22234567788888888764422 5
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
++||+|||+++.+|++++|+|||+..++++.|+.++|.+||+.+.++..+. ++..+..+|..|+||+++||+.+|++|.
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAA 669 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877654332 3345899999999999999999999999
Q ss_pred HHHHhhhcccCCc--c-----cccccccccccccccccccccccc
Q 001560 790 HAAVGRYLHSDSS--F-----EKHIKPTLVRDDFSQAMHEFLPVA 827 (1052)
Q Consensus 790 ~~a~~r~~~~~~~--~-----~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1052)
..++.+....... . .......++.+||..|+....|+.
T Consensus 670 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 670 MAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred HHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 9888875422110 0 011224688999999998877753
No 44
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-26 Score=264.39 Aligned_cols=228 Identities=25% Similarity=0.271 Sum_probs=195.8
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s 630 (1052)
....+++|+.++++-+.+.| ..+..++++|....++.+.|||||||||||||.||.++|...+ ..++.+..-
T Consensus 664 i~w~digg~~~~k~~l~~~i--~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~------~~fisvKGP 735 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVI--EWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN------LRFISVKGP 735 (952)
T ss_pred CCceecccHHHHHHHHHHHH--hccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC------eeEEEecCH
Confidence 45678888888777776644 4456789999999999999999999999999999999999887 678888888
Q ss_pred cccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcE
Q 001560 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1052)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1052)
++..++.|..++.++++|..|...+|||||+||+|+++|.++.. +.....++.++|+..||+..+- ..|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD----sTGVTDRVVNQlLTelDG~Egl-------~GV 804 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD----STGVTDRVVNQLLTELDGAEGL-------DGV 804 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC----CCCchHHHHHHHHHhhcccccc-------ceE
Confidence 89999999999999999999999999999999999999865432 2334558889999989876542 369
Q ss_pred EEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 001560 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 711 ~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~ 790 (1052)
.++|+|.+|+.+||+|+|+||+++.+.-+.|+..+|.+|++.+.... ...++.+++.+|..|+||+++||+.++..|..
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~-~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL-LKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc-CCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876543 33456679999999999999999999999988
Q ss_pred HHHhhhcc
Q 001560 791 AAVGRYLH 798 (1052)
Q Consensus 791 ~a~~r~~~ 798 (1052)
.++.+.+.
T Consensus 884 ~avh~~l~ 891 (952)
T KOG0735|consen 884 AAVHEILK 891 (952)
T ss_pred HHHHHHHH
Confidence 88877653
No 45
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.6e-27 Score=248.12 Aligned_cols=173 Identities=31% Similarity=0.531 Sum_probs=158.3
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
...|+.++|+..+...+++.+++|+..+.+|.+.++.+|.+++||||||||||.+|+++|..+|.+|+.+..+++.++|+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhhh
Q 001560 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNF 999 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 999 (1052)
||+.+.+|+.|..|+...|||+|+||||+++++|.. .....+|.++.
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~s-e~Ts~dreiqr-------------------------------- 254 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFS-EGTSSDREIQR-------------------------------- 254 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEec-cccchhHHHHH--------------------------------
Confidence 999999999999999999999999999999998843 33344555544
Q ss_pred cccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccccc
Q 001560 1000 LISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 1000 ~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
|+-+|+++|||++....|-+|||||+ ||||+|+.+.+++|+.--.+
T Consensus 255 ------TLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~ 309 (388)
T KOG0651|consen 255 ------TLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARL 309 (388)
T ss_pred ------HHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhce
Confidence 34449999999999999999999999 99999999999999875443
No 46
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=8.8e-27 Score=273.72 Aligned_cols=169 Identities=40% Similarity=0.656 Sum_probs=153.0
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe----------EEE
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FIS 908 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~----------~i~ 908 (1052)
+...|++|+|++..++.+++.+.+++.+++.|...++.+++|+|||||||||||++|+++|+.++.+ |+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 4588999999999999999999999999999999999999999999999999999999999998654 778
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHhcC----CCEEEEEeCCCccCCcCCCC-CcccchhhhhccccccceeeeeeeccC
Q 001560 909 VKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQVSSTSYLFIIYFWEVG 983 (1052)
Q Consensus 909 v~~s~l~~~yvGese~~ir~lf~~A~~~----~p~ILfiDEid~l~~~r~~~-~~~~~~r~v~~~~~~~~~~i~~~~~~~ 983 (1052)
+++++++++|+|++++.++.+|+.|+.. .||||||||+|+++.+|+.+ +.+...+++++
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~---------------- 320 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQ---------------- 320 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHH----------------
Confidence 8889999999999999999999998763 79999999999999988754 23444566777
Q ss_pred cccCccccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 984 KKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||++|||++..++++||+|||+ ||||||+.|+|++|+.+.
T Consensus 321 --------------------------LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~ 369 (512)
T TIGR03689 321 --------------------------LLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEA 369 (512)
T ss_pred --------------------------HHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHH
Confidence 9999999998889999999999 999999999999999764
No 47
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.93 E-value=3.2e-26 Score=264.44 Aligned_cols=169 Identities=35% Similarity=0.541 Sum_probs=154.3
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
+...|+||+|++.+++.+++.+++|+.+++.|...|+.++.++|||||||||||++|+++|+.++.+|+.+.++++..+|
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKY 219 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCccc---chhhhhccccccceeeeeeeccCcccCccccchhh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYI 995 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~---~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 995 (1052)
+|++++.++++|..|+..+||||||||+|+++.+|.....+. ..+++.+
T Consensus 220 ~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~---------------------------- 271 (398)
T PTZ00454 220 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLE---------------------------- 271 (398)
T ss_pred cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHH----------------------------
Confidence 999999999999999999999999999999998885433221 2233444
Q ss_pred hhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 996 LVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 996 ~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||++|||+....+++||+|||+ ||||||+.|+|++|+.+-
T Consensus 272 --------------LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~ 320 (398)
T PTZ00454 272 --------------LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 320 (398)
T ss_pred --------------HHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHH
Confidence 9999999988889999999998 999999999999999764
No 48
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.93 E-value=7.5e-26 Score=271.19 Aligned_cols=247 Identities=21% Similarity=0.330 Sum_probs=199.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+++++|.+..++.+.+.+..+. .+..|...+..+|+++||+||||||||++|+++|++++ .+++.+++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~---~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~------~~~~~i~~ 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLK---NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSISG 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHH---CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCeeeccH
Confidence 4567789999999888887555433 34467777888899999999999999999999999987 67888888
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
+++...+.+...+.++++|..+....|+||||||+|.+++.+...... .........+.|+..|+.+.... .
T Consensus 122 ~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~lL~~~d~~~~~~-------~ 193 (495)
T TIGR01241 122 SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGTNT-------G 193 (495)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC-ccHHHHHHHHHHHhhhccccCCC-------C
Confidence 888776667777889999999999999999999999998654332111 12233456666777777765432 4
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
++||+|||+++.+|++++|+|||+..++++.|+.++|.+|++.++...... ++..+..++..+.||+++||+.+|++|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765443 4556889999999999999999999997
Q ss_pred HHHHhhhcccCCcccccccccccccccccccccccc
Q 001560 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1052)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1052)
..+..+ ....++.+||..|+.....
T Consensus 273 ~~a~~~-----------~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 273 LLAARK-----------NKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHc-----------CCCCCCHHHHHHHHHHHhc
Confidence 766543 2246889999999887543
No 49
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-26 Score=238.17 Aligned_cols=247 Identities=19% Similarity=0.270 Sum_probs=203.7
Q ss_pred cccccccccccchhHHHHHHHHHH-HhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIK-VLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF 626 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l~-~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~ 626 (1052)
..+.++++++|..++++.+++.+. .++ .++.|..+|+.||.|+|+|||||||||..||++|+... +.++.
T Consensus 171 kpdvty~dvggckeqieklrevve~pll---~perfv~lgidppkgvllygppgtgktl~aravanrtd------acfir 241 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLL---HPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD------ACFIR 241 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhcccc---CHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC------ceEEe
Confidence 446778999999999999988774 444 45689999999999999999999999999999999876 88999
Q ss_pred EecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccC
Q 001560 627 VCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1052)
Q Consensus 627 v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1052)
+-.++|..++.|+-.+.++++|+.|+....||+|+||+|.+.+.+-+.....+ ..+.+..-.|...+|++..+
T Consensus 242 vigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggd-nevqrtmleli~qldgfdpr------ 314 (435)
T KOG0729|consen 242 VIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGD-NEVQRTMLELINQLDGFDPR------ 314 (435)
T ss_pred ehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCc-HHHHHHHHHHHHhccCCCCC------
Confidence 99999999999999999999999999999999999999999876655433333 33333333344556665543
Q ss_pred cCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHH-HHHHHhhhcCCCCHHHHHHHH
Q 001560 707 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILV 785 (1052)
Q Consensus 707 ~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~-~l~~La~~teG~s~~DL~~Lv 785 (1052)
+++-|+.+||+|+.+||+|+|+||.++.++|..||.+.|..|++.+.+. +.+..+ -++.+|+.|..-++++|+.+|
T Consensus 315 -gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvc 391 (435)
T KOG0729|consen 315 -GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVC 391 (435)
T ss_pred -CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHH
Confidence 4799999999999999999999999999999999999999999976654 333333 478899999999999999999
Q ss_pred HHHHHHHHhhhcccCCccccccccccccccccccccccc
Q 001560 786 DRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1052)
Q Consensus 786 ~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1052)
.+|-..|+... ....|..||..|+....
T Consensus 392 teagmfairar-----------rk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 392 TEAGMFAIRAR-----------RKVATEKDFLDAVNKVV 419 (435)
T ss_pred HHhhHHHHHHH-----------hhhhhHHHHHHHHHHHH
Confidence 99988777542 14578889988877643
No 50
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-26 Score=270.58 Aligned_cols=168 Identities=29% Similarity=0.532 Sum_probs=153.3
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
..+.|.|+.|.++.|+.+.+.+. .++.|..|...|.+.|+|+||+||||||||++||++|.+.+.||+.+++++++..|
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 45889999999999999999998 57899999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCc---ccchhhhhccccccceeeeeeeccCcccCccccchhh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYI 995 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~---~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 995 (1052)
+|-....+|++|++|++.+|||+||||+|++...|+.+.. ......+||
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQ---------------------------- 275 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQ---------------------------- 275 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHH----------------------------
Confidence 9999999999999999999999999999999999975422 222224444
Q ss_pred hhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 996 LVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 996 ~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||.+|||+...++|+||+|||| |||||||.|.+++||...
T Consensus 276 --------------lLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 276 --------------LLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred --------------HHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 9999999998899999999999 999999999999999653
No 51
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.8e-26 Score=265.68 Aligned_cols=248 Identities=21% Similarity=0.326 Sum_probs=211.1
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v 627 (1052)
.....|.++.|.+++++++.+-+..+..| ..|..+|...|+|+||+||||||||.|||++|.+.+ .++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p---~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~------VPFf~i 214 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNP---KKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSI 214 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCc---hhhHhcccccccceeEecCCCCCcHHHHHHHhcccC------CCceec
Confidence 34567788999999999998877776554 468888999999999999999999999999999988 889999
Q ss_pred ecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCc
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
+.+++....++.-...++++|.+|..++|||+||||+|.+...+....+. .....++.+++|+..||++....
T Consensus 215 SGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg-gnderEQTLNQlLvEmDGF~~~~------ 287 (596)
T COG0465 215 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGGNE------ 287 (596)
T ss_pred cchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC-CchHHHHHHHHHHhhhccCCCCC------
Confidence 99999888888778889999999999999999999999998765444332 34456688899999999987432
Q ss_pred CcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~ 787 (1052)
.|+++++||+++-+|++|+|+|||++.+.++.||...|.+|++.++++..+. .+..+..+|+.|.||+++|+.+++.+
T Consensus 288 -gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 288 -GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred -ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHH
Confidence 5999999999999999999999999999999999999999999888876655 33457779999999999999999999
Q ss_pred HHHHHHhhhcccCCccccccccccccccccccccccc
Q 001560 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1052)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1052)
|...+.++. ...+++.||..|.....
T Consensus 366 Aal~aar~n-----------~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 366 AALLAARRN-----------KKEITMRDIEEAIDRVI 391 (596)
T ss_pred HHHHHHHhc-----------CeeEeccchHHHHHHHh
Confidence 988887762 25578888888776643
No 52
>CHL00176 ftsH cell division protein; Validated
Probab=99.93 E-value=2.8e-25 Score=269.34 Aligned_cols=245 Identities=20% Similarity=0.318 Sum_probs=198.1
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+.+++|++..++++.+.+..+.. +..|...+...|+++||+||||||||++|+++|++++ .++++++|
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~---~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~------~p~i~is~ 249 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKK---PERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE------VPFFSISG 249 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhC---HHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeeeccH
Confidence 45677899999998888776655433 3457777888899999999999999999999999987 77888999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
+++.....+.....++++|..+..+.|+||||||+|.++..+....+. ......+.+..|+..++++.... +
T Consensus 250 s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~e~~~~L~~LL~~~dg~~~~~-------~ 321 (638)
T CHL00176 250 SEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG-GNDEREQTLNQLLTEMDGFKGNK-------G 321 (638)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC-CcHHHHHHHHHHHhhhccccCCC-------C
Confidence 988766666666778999999999999999999999998654332222 22333456666777777665432 5
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+++|++||+++.+|++++|+|||++++.++.|+.++|.+||+.+++.... .++..+..+|..+.||+++||+.++++|+
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999887432 34567899999999999999999999998
Q ss_pred HHHHhhhcccCCcccccccccccccccccccccc
Q 001560 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
..+..+ ....++.+||..|+...
T Consensus 401 l~a~r~-----------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 401 ILTARR-----------KKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHh-----------CCCCcCHHHHHHHHHHH
Confidence 766544 22458889999988765
No 53
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.93 E-value=1.5e-24 Score=272.02 Aligned_cols=358 Identities=17% Similarity=0.230 Sum_probs=217.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc----ceeeEEEE
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~~~v~~v 627 (1052)
.+..+.|.+..+..+++.+ .+. ...+++|+||||||||++++.+|+.+..+.. ....++.+
T Consensus 185 ~ld~~iGr~~ei~~~i~~l---~r~------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDIL---LRR------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCcccCCHHHHHHHHHHH---hcC------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3445667777655554422 211 1246899999999999999999999854321 12446667
Q ss_pred eccccc--CCchhhHHHHhhhhHHHhhc-cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 001560 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1052)
Q Consensus 628 ~~s~L~--~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1052)
+...+. ..+.++.+..++.++.++.. ..+.||||||+|.+.+.+.. .+.. . ..+.|...+..
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~-~~~~--d----~~n~Lkp~l~~-------- 314 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ-AGQG--D----AANLLKPALAR-------- 314 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc-cccc--c----HHHHhhHHhhC--------
Confidence 777665 35678888999999998864 46789999999999864322 1111 1 12333333321
Q ss_pred cCcCcEEEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhh----ccCCCCHHHHHHHhhhcCC
Q 001560 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (1052)
Q Consensus 705 ~~~~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~----~~~~~sd~~l~~La~~teG 775 (1052)
|.+.+|++|+..+ .++++|.| ||. .|.++.|+.+++.+||+.+... +++.++++.+..++..+.+
T Consensus 315 ---G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 315 ---GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred ---CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 3589999998743 47999999 996 8999999999999998765543 4567899999999998887
Q ss_pred CCH-----HHHHHHHHHHHHHHHhhhc-----------------------ccCCcc--ccc-------------------
Q 001560 776 YDA-----YDLEILVDRTVHAAVGRYL-----------------------HSDSSF--EKH------------------- 806 (1052)
Q Consensus 776 ~s~-----~DL~~Lv~~A~~~a~~r~~-----------------------~~~~~~--~~~------------------- 806 (1052)
|.+ ...-.+++.|+........ ...... ...
T Consensus 389 yi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (852)
T TIGR03345 389 YIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAA 468 (852)
T ss_pred ccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 744 2333445554422111000 000000 000
Q ss_pred --------------------------------------------------------cccccccccccccccccccccccc
Q 001560 807 --------------------------------------------------------IKPTLVRDDFSQAMHEFLPVAMRD 830 (1052)
Q Consensus 807 --------------------------------------------------------~~~~lt~eDf~~Al~~~~P~~lr~ 830 (1052)
....++.+|+.+.+...+......
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~ 548 (852)
T TIGR03345 469 LEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGR 548 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchh
Confidence 000011122222222211111100
Q ss_pred ccccccC----CCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---C
Q 001560 831 ITKTSAE----GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---S 903 (1052)
Q Consensus 831 v~~~~~~----~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~ 903 (1052)
+...... -....-..+.|+++..+.+.+.+..... ....+.++...+||+||||||||.+|+++|..+ +
T Consensus 549 ~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~----gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~ 624 (852)
T TIGR03345 549 MVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARA----GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE 624 (852)
T ss_pred hchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhc----CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 0000000 0011224577888888877777653210 001122333458999999999999999999998 4
Q ss_pred CeEEEeechhhhhh------------hhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 904 LRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 904 ~~~i~v~~s~l~~~------------yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
..++.++++++... |+|..+.. .+.+..+..+++||+|||||++.+
T Consensus 625 ~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~ 682 (852)
T TIGR03345 625 QNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHP 682 (852)
T ss_pred cceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcCH
Confidence 57899999887532 66654322 244555667889999999998754
No 54
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.2e-26 Score=249.54 Aligned_cols=170 Identities=31% Similarity=0.516 Sum_probs=156.4
Q ss_pred CCCCCccccccchhHHHHHHHHhhcccCChhhhhcCC-cccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhh
Q 001560 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1052)
Q Consensus 838 ~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~ 916 (1052)
...++|+||+|++.+++.+++.+.+|+++++.|...+ .+++.|+|||||||||||++|+++|++.|.+|+.|.++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3468999999999999999999999999999997655 588999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhh
Q 001560 917 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYIL 996 (1052)
Q Consensus 917 ~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 996 (1052)
+|+|++++.++.+|..|.+.+|||+||||+|++.+.|+....+++..+-++
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~e----------------------------- 216 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNE----------------------------- 216 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999976667777777788
Q ss_pred hhhcccccchhHHHhhhhcCCcccCC--eEEEEeCCC-------CCCCcceEEEecCCcccc
Q 001560 997 VNFLISACPCFQQFLTELDGVEVLTG--VFVFAATRL-------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 997 ~~~~~~~~~~~~~lL~~ldg~~~~~~--v~vi~aTn~-------r~gRfd~~i~~~~p~~~~ 1049 (1052)
|+..-||+.+.++ |+|+||||| ..+|+-+.+++++|+.+-
T Consensus 217 -------------FM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 217 -------------FMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQ 265 (386)
T ss_pred -------------HHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhh
Confidence 8889999987765 999999999 678999999999998653
No 55
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.93 E-value=2.6e-25 Score=258.12 Aligned_cols=170 Identities=34% Similarity=0.551 Sum_probs=154.1
Q ss_pred CCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhh
Q 001560 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1052)
Q Consensus 838 ~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~ 917 (1052)
.+...|++++|+++.++.+++.+.+++.+++.|..+|+.+++++|||||||||||++|+++|+.++.+|+.++++++.++
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCccc---chhhhhccccccceeeeeeeccCcccCccccchh
Q 001560 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIY 994 (1052)
Q Consensus 918 yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~---~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 994 (1052)
|+|++++.++.+|+.|+...||||||||+|.++++|+.+..+. ..+.+.+
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~--------------------------- 257 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQ--------------------------- 257 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHH---------------------------
Confidence 9999999999999999999999999999999998886543221 1222333
Q ss_pred hhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 995 ILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 995 ~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||.+++|+....+++||+|||+ ||||||+.|+|++|+.+.
T Consensus 258 ---------------lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~ 306 (389)
T PRK03992 258 ---------------LLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEG 306 (389)
T ss_pred ---------------HHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHH
Confidence 8999999888889999999998 899999999999999764
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.93 E-value=7.6e-25 Score=253.00 Aligned_cols=245 Identities=24% Similarity=0.342 Sum_probs=193.9
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+.+++|++..++.+.+.+...+ ..+..|...+..+|.++||+||||||||++|+++|++++ .+++.+.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~--~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~ 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPL--KHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHh--cCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC------CCEEecch
Confidence 4456789999999999999886432 245678888999999999999999999999999999987 56677777
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
..+...+.+.....++.+|..+....|+||||||+|.++..+.+........ ....+..++..++.+... ++
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~-~~~~l~~ll~~ld~~~~~-------~~ 261 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDRE-VQRTLMQLLAELDGFDPR-------GN 261 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHH-HHHHHHHHHHHhhCCCCC-------CC
Confidence 7777777777778889999999989999999999999986543322222222 222333344444443221 25
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+.+|+|||+++.++++++++|||+..++++.|+.++|.+|++.++.+..+. .+..+..++..++||+++||..+|++|.
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887654432 2235889999999999999999999999
Q ss_pred HHHHhhhcccCCccccccccccccccccccccc
Q 001560 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1052)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1052)
..|+.+ ....++.+||..|+..
T Consensus 341 ~~a~~~-----------~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 341 MFAIRE-----------ERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHh-----------CCCccCHHHHHHHHHH
Confidence 988766 2246899999988765
No 57
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.92 E-value=4.1e-24 Score=269.52 Aligned_cols=357 Identities=19% Similarity=0.266 Sum_probs=230.3
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc----ceeeEEEEe
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~~~v~~v~ 628 (1052)
+..+.|.+..++.+++.+. .....+++|+||||||||++|+.+|..+..... ....++.++
T Consensus 178 ~~~~igr~~ei~~~~~~L~---------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 178 LDPVIGREKEIERVIQILG---------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCcHHHHHHHHHHHc---------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4456788888777766442 122357999999999999999999998753211 124677788
Q ss_pred ccccc--CCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccC
Q 001560 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1052)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1052)
...+. ..+.|+.++.++.+++++....+.||||||+|.+++.+.. ++. . ...+.|...+..
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~-~g~--~----~~a~lLkp~l~r---------- 305 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA-EGA--I----DAANILKPALAR---------- 305 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC-CCc--c----cHHHHhHHHHhC----------
Confidence 87765 4567889999999999998778899999999999864322 221 1 223334333321
Q ss_pred cCcEEEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHh----hccCCCCHHHHHHHhhhcCCCC
Q 001560 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDGYD 777 (1052)
Q Consensus 707 ~~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~----~~~~~~sd~~l~~La~~teG~s 777 (1052)
+.+.+|++|+..+ ..++++.+ ||. .+.++.|+.++..+|++.... ..+..++++.+..++..+.+|.
T Consensus 306 -g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 306 -GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred -CCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 2588999998754 46889998 997 589999999999999986543 2445688999988888887775
Q ss_pred H-----HHHHHHHHHHHHHHHhhhc--cc---------------------CCcc--------------------------
Q 001560 778 A-----YDLEILVDRTVHAAVGRYL--HS---------------------DSSF-------------------------- 803 (1052)
Q Consensus 778 ~-----~DL~~Lv~~A~~~a~~r~~--~~---------------------~~~~-------------------------- 803 (1052)
+ ...-.+++.|+........ +. ....
T Consensus 382 ~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (821)
T CHL00095 382 ADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKT 461 (821)
T ss_pred ccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 3344566665543211100 00 0000
Q ss_pred ---cccccccccccccccccccccccccccccccccC----CCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcc
Q 001560 804 ---EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR 876 (1052)
Q Consensus 804 ---~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~----~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~ 876 (1052)
.......++.+|+.+.+...+......+...... -....-..+.|++++.+.+...+.... .....+-+
T Consensus 462 ~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~----~gl~~~~~ 537 (821)
T CHL00095 462 EEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRAR----VGLKNPNR 537 (821)
T ss_pred hhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHh----hcccCCCC
Confidence 0000133555666666555543322211111000 001123568899999888887775321 00011223
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhh-----hh-------hhcccHHHHHHHHHHHhcCCCEEE
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL-----NK-------YIGASEQAVRDIFSKATAAAPCLL 941 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~-----~~-------yvGese~~ir~lf~~A~~~~p~IL 941 (1052)
+...+||+||+|||||++|+++|+.+ +.+++.++++++. ++ |+|..+ ...+.+..+..+.+|+
T Consensus 538 p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~Vv 615 (821)
T CHL00095 538 PIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVV 615 (821)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEE
Confidence 33458999999999999999999987 4689999998863 22 444333 2345666667777999
Q ss_pred EEeCCCccCC
Q 001560 942 FFDEFDSIAP 951 (1052)
Q Consensus 942 fiDEid~l~~ 951 (1052)
+|||+|++.+
T Consensus 616 llDeieka~~ 625 (821)
T CHL00095 616 LFDEIEKAHP 625 (821)
T ss_pred EECChhhCCH
Confidence 9999999854
No 58
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.92 E-value=1.6e-24 Score=254.80 Aligned_cols=195 Identities=20% Similarity=0.311 Sum_probs=155.4
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc----ceeeEE
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIV 625 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~~~v~ 625 (1052)
+..+.+++|++..++.+++.+...+ ..+.+|...++++|+++|||||||||||++|+++|+++..... ....++
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~--~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPF--LHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHh--hCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 4567889999999999999885432 2466889999999999999999999999999999999864311 113344
Q ss_pred EEecccccCCchhhHHHHhhhhHHHhhc----cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 001560 626 FVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1052)
Q Consensus 626 ~v~~s~L~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1052)
.+...++...+.++.++.++.+|..+.. ..|+||||||+|.+++.+.... +......++..|+..++++...
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~---s~d~e~~il~~LL~~LDgl~~~- 331 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV---SSDVETTVVPQLLSELDGVESL- 331 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc---cchHHHHHHHHHHHHhcccccC-
Confidence 5556677778888888888888888765 3699999999999986543221 1222345677788888876542
Q ss_pred CCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhh
Q 001560 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (1052)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~ 756 (1052)
+++++|+|||+++.||++++|+|||+.+|+|+.|+.++|.+||+.++..
T Consensus 332 ------~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 332 ------DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ------CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 2599999999999999999999999999999999999999999998864
No 59
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=2.8e-25 Score=245.55 Aligned_cols=161 Identities=16% Similarity=0.187 Sum_probs=127.0
Q ss_pred Ccccc-ccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhc
Q 001560 842 GWDDV-GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1052)
Q Consensus 842 ~~~~i-~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvG 920 (1052)
.++++ +|+.-.+..+....--.. .......+++++.+++||||||||||++|+++|+++|.+|+.++++++.++|+|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 555444444443332111 112223568999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc-----CCCEEEEEeCCCccCCcCCCCCcccchhhh-hccccccceeeeeeeccCcccCccccchh
Q 001560 921 ASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVV-NQVSSTSYLFIIYFWEVGKKEGVVPYDIY 994 (1052)
Q Consensus 921 ese~~ir~lf~~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~r~v-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 994 (1052)
++|+.+|++|+.|+. ++||||||||||+++++|+.....+..+++ .+
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~t--------------------------- 243 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGT--------------------------- 243 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHH---------------------------
Confidence 999999999999975 579999999999999999855445556666 45
Q ss_pred hhhhhcccccchhHHHhhhhcCC------------cccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 995 ILVNFLISACPCFQQFLTELDGV------------EVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 995 ~~~~~~~~~~~~~~~lL~~ldg~------------~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
||+.||+. +...+|+||+|||+ ||||||+.+ .+|+.+
T Consensus 244 ---------------LLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 244 ---------------LMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred ---------------HHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 88888763 34568999999999 999999965 488876
No 60
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-24 Score=258.77 Aligned_cols=359 Identities=17% Similarity=0.229 Sum_probs=236.0
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc----ceeeEEE
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVF 626 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~~~v~~ 626 (1052)
..++-++|.+..+..+++-| .+.. ..+-+|.|+||+|||.++..+|.....+.. ....++.
T Consensus 167 gklDPvIGRd~EI~r~iqIL---~RR~------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQIL---SRRT------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred CCCCCCcChHHHHHHHHHHH---hccC------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 34556778888777776643 2211 244678899999999999999998875432 2245677
Q ss_pred Eeccccc--CCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 001560 627 VCCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1052)
Q Consensus 627 v~~s~L~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1052)
+|...+. .++.|+.+..++.++.+.....+.||||||+|.+.+...... . ...+.+.+.-.| .
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaL----A--------- 296 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPAL----A--------- 296 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHH----h---------
Confidence 7777766 567899999999999999888899999999999997543222 1 222332333222 2
Q ss_pred cCcCcEEEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHh----hccCCCCHHHHHHHhhhcCC
Q 001560 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDG 775 (1052)
Q Consensus 705 ~~~~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~----~~~~~~sd~~l~~La~~teG 775 (1052)
+|.+.+||+|+-.+ .-|++|.| ||. .+.+..|+.++-..||+..-. .++..++|+++...+..+..
T Consensus 297 --RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R 371 (786)
T COG0542 297 --RGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR 371 (786)
T ss_pred --cCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh
Confidence 13588998887543 34789999 999 799999999999999986443 35567889888877776654
Q ss_pred C-----CHHHHHHHHHHHHHHHHhhhc-ccC--------------------------C-cccc---------------cc
Q 001560 776 Y-----DAYDLEILVDRTVHAAVGRYL-HSD--------------------------S-SFEK---------------HI 807 (1052)
Q Consensus 776 ~-----s~~DL~~Lv~~A~~~a~~r~~-~~~--------------------------~-~~~~---------------~~ 807 (1052)
| .|.-.-.+++.|+........ +.. . .... ..
T Consensus 372 YI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 451 (786)
T COG0542 372 YIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELE 451 (786)
T ss_pred hcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHh
Confidence 4 333344556665533222100 000 0 0000 00
Q ss_pred ccccccccccccccccccccccccccccc----CCCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeE
Q 001560 808 KPTLVRDDFSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLL 883 (1052)
Q Consensus 808 ~~~lt~eDf~~Al~~~~P~~lr~v~~~~~----~~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL 883 (1052)
. .++.+++...+...+............ ......-..++|+++....+.+.+... ...-.-+.+|-+.+||
T Consensus 452 ~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra----RaGL~dp~rPigsFlF 526 (786)
T COG0542 452 A-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA----RAGLGDPNRPIGSFLF 526 (786)
T ss_pred h-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH----hcCCCCCCCCceEEEe
Confidence 0 133345555555554322211100000 001123456899999888888877632 1111223455567999
Q ss_pred ecCCCCchhhHHHHHHHHcC---CeEEEeechhhhhh------------hhcccHHHHHHHHHHHhcCCCEEEEEeCCCc
Q 001560 884 YGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDS 948 (1052)
Q Consensus 884 ~GppGtGKT~lA~alA~~~~---~~~i~v~~s~l~~~------------yvGese~~ir~lf~~A~~~~p~ILfiDEid~ 948 (1052)
.||+|+|||.+|++||..+. ..++.+++|++..+ |+|-.+. ..+-+..|+.++||++||||++
T Consensus 527 ~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 527 LGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred eCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhh
Confidence 99999999999999999995 78999999999743 7776662 3566777888899999999999
Q ss_pred cCC
Q 001560 949 IAP 951 (1052)
Q Consensus 949 l~~ 951 (1052)
..|
T Consensus 605 AHp 607 (786)
T COG0542 605 AHP 607 (786)
T ss_pred cCH
Confidence 976
No 61
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=7.7e-25 Score=276.12 Aligned_cols=214 Identities=16% Similarity=0.187 Sum_probs=169.6
Q ss_pred cccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCc------------------------
Q 001560 581 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK------------------------ 636 (1052)
Q Consensus 581 ~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~------------------------ 636 (1052)
...++|+.+|+||||+||||||||.|||++|.+.+ .+++.++++++...+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSY------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC------CceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 34567889999999999999999999999999988 788888887776322
Q ss_pred -----------------hhh--HHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001560 637 -----------------GPI--IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1052)
Q Consensus 637 -----------------~~~--~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~ 697 (1052)
.+. .+..++.+|+.|+..+||||||||||.+... +. . ...+.+|+..|++.
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~--ds------~--~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN--ES------N--YLSLGLLVNSLSRD 1764 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC--cc------c--eehHHHHHHHhccc
Confidence 011 1224788999999999999999999999743 10 0 12356666777754
Q ss_pred ccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHH--HHHHHhhhcCC
Q 001560 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE--ILLDVASKCDG 775 (1052)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~--~l~~La~~teG 775 (1052)
... +...+|+||||||+|+.+||||+|+|||++.|.++.|+..+|.+++..++..+++...++ .+..+|+.|.|
T Consensus 1765 ~~~----~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1765 CER----CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred ccc----CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCC
Confidence 321 112369999999999999999999999999999999999999999886655445544432 47899999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccccccccc
Q 001560 776 YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1052)
Q Consensus 776 ~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1052)
|+|+||.++|.+|+..|+.+ .+..++.+++..|+.+.+.
T Consensus 1841 fSGADLanLvNEAaliAirq-----------~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1841 SNARDLVALTNEALSISITQ-----------KKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred CCHHHHHHHHHHHHHHHHHc-----------CCCccCHHHHHHHHHHHHh
Confidence 99999999999999988877 2356888999999988754
No 62
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.92 E-value=2.6e-25 Score=258.33 Aligned_cols=172 Identities=31% Similarity=0.499 Sum_probs=153.5
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
+...|+||+|++..++.+++.+.+++.+++.|...++.++.++|||||||||||++|+++|.+++.+|+.+.++++.++|
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVN 998 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 998 (1052)
+|++++.++++|+.|+...||||||||||+++.+|.....+....+...
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~------------------------------- 306 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRT------------------------------- 306 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHH-------------------------------
Confidence 9999999999999999999999999999999988865433322222111
Q ss_pred hcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 999 FLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 999 ~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
+.+||++|||+....++.||+|||+ ||||||+.|+|++|+.+.
T Consensus 307 --------ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~ 358 (438)
T PTZ00361 307 --------MLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKT 358 (438)
T ss_pred --------HHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHH
Confidence 2239999999988889999999998 899999999999998754
No 63
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.9e-25 Score=268.07 Aligned_cols=168 Identities=33% Similarity=0.589 Sum_probs=155.7
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPE 913 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~ 913 (1052)
....|+++||++.++..|++++..|+.|++.|.++++.+++|+||+||||||||+.|+++|..+ ...|+--++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 3578999999999999999999999999999999999999999999999999999999999998 45678889999
Q ss_pred hhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccch
Q 001560 914 LLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDI 993 (1052)
Q Consensus 914 l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 993 (1052)
.+++|+|+.|+.++.+|+.|++..|+|+||||||.|++.|+.........++..
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvST-------------------------- 393 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVST-------------------------- 393 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHH--------------------------
Confidence 999999999999999999999999999999999999999976544445556666
Q ss_pred hhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 994 YILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 994 ~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
||..|||+.+++.|+||+|||| ||||||+.+||++|+.+
T Consensus 394 ----------------LLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ 441 (1080)
T KOG0732|consen 394 ----------------LLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVD 441 (1080)
T ss_pred ----------------HHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchH
Confidence 9999999999999999999999 99999999999999764
No 64
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.1e-24 Score=242.46 Aligned_cols=259 Identities=19% Similarity=0.239 Sum_probs=201.8
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v 627 (1052)
+....+.+++|++.+...+.+.+. +....+..|..+. .+++++||.||||+|||+|++++|.+.+ +.+..+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi--~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~------atff~i 217 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVI--LPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG------ATFFNI 217 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhh--hcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhc------ceEeec
Confidence 334556677888887777777553 2233344565544 4456799999999999999999999988 889999
Q ss_pred ecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCc
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
+++.|.+++.|+.++.++.+|.-|+..+|+|+||||+|+++..+.+.++..+.. ...++|+.. +...... -
T Consensus 218 SassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr---~ktefLiq~-~~~~s~~-----~ 288 (428)
T KOG0740|consen 218 SASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRR---LKTEFLLQF-DGKNSAP-----D 288 (428)
T ss_pred cHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchh---hhhHHHhhh-ccccCCC-----C
Confidence 999999999999999999999999999999999999999998875555433222 334444443 3222211 1
Q ss_pred CcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~ 787 (1052)
..|++|||||.|+.+|.+++| ||.+++++|.|+.+.|..+|+.++.+.+..+.+..+..+++.|+||++.|+..+|..
T Consensus 289 drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 289 DRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred CeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 269999999999999999999 999999999999999999999999988777888999999999999999999999999
Q ss_pred HHHHHHhhhcc--cCCccccccccccccccccccccccccc
Q 001560 788 TVHAAVGRYLH--SDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1052)
Q Consensus 788 A~~~a~~r~~~--~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1052)
|...-...... .-........+.++..||..+++...|.
T Consensus 367 a~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 367 AAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred hhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 97654443322 1112223344567788888888877664
No 65
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.91 E-value=2.2e-24 Score=258.62 Aligned_cols=168 Identities=30% Similarity=0.565 Sum_probs=152.1
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
+..+|++++|++++++.+++.+.+ +++++.+...+...+.++||+||||||||++|+++|.+++.+|+.++++++.+.|
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 468999999999999999998886 7888999998999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCC---cccchhhhhccccccceeeeeeeccCcccCccccchhh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYI 995 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~---~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 995 (1052)
.|.+++.++++|+.|+..+||||||||+|+++.+|+.+. .....+++++
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~---------------------------- 180 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQ---------------------------- 180 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHH----------------------------
Confidence 999999999999999999999999999999998886531 2223345555
Q ss_pred hhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 996 LVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 996 ~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||++|||+....+++||+|||+ ||||||+.|++++|+.+.
T Consensus 181 --------------lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 181 --------------LLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred --------------HHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 9999999988889999999999 899999999999999753
No 66
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.91 E-value=4.8e-23 Score=260.48 Aligned_cols=201 Identities=16% Similarity=0.239 Sum_probs=136.9
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc----ceeeEEEEe
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~~~v~~v~ 628 (1052)
+..+.|.+..+..+++.+ .+ ....+++|+||||+|||++++.+|+.+..+.. ....++.++
T Consensus 172 ~~~~igr~~ei~~~~~~l---~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVL---SR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCcCCCcHHHHHHHHHHH---hc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 445667777655554432 11 12356899999999999999999998753211 125677777
Q ss_pred ccccc--CCchhhHHHHhhhhHHHhhc-cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 001560 629 CSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1052)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1052)
...+. ..+.++.++.++.++..+.. ..+.||||||+|.+++.+.. .+. . ...+.|...+.
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~-~~~--~----d~~~~Lk~~l~---------- 299 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA-EGA--M----DAGNMLKPALA---------- 299 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC-cch--h----HHHHHhchhhh----------
Confidence 77664 35667888889999988754 35899999999999853321 111 1 22233333221
Q ss_pred CcCcEEEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhh----ccCCCCHHHHHHHhhhcCCC
Q 001560 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGY 776 (1052)
Q Consensus 706 ~~~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~----~~~~~sd~~l~~La~~teG~ 776 (1052)
.+.+.+|++|+..+ .+|+++.| ||. .+.++.|+.+++.+|++.+..+ +++.+.++.+..++..+.+|
T Consensus 300 -~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 300 -RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred -cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 13589999998764 47999999 997 6899999999999999977554 34557788888888777666
Q ss_pred C-----HHHHHHHHHHHH
Q 001560 777 D-----AYDLEILVDRTV 789 (1052)
Q Consensus 777 s-----~~DL~~Lv~~A~ 789 (1052)
. |.-.-.++++|+
T Consensus 376 i~~r~lPdkAidlld~a~ 393 (852)
T TIGR03346 376 ITDRFLPDKAIDLIDEAA 393 (852)
T ss_pred ccccCCchHHHHHHHHHH
Confidence 4 333444555554
No 67
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-24 Score=242.56 Aligned_cols=162 Identities=35% Similarity=0.523 Sum_probs=140.6
Q ss_pred cccchhHH-HHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC-eEEEeechhhhhhhhcccH
Q 001560 846 VGGLTDIQ-NAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-RFISVKGPELLNKYIGASE 923 (1052)
Q Consensus 846 i~g~~~vk-~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~-~~i~v~~s~l~~~yvGese 923 (1052)
|||++.-- +..++........|+...++|+.+-+|+|||||||||||.+||.+.+.++. +--.|++++++++|+|++|
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE 302 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESE 302 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccH
Confidence 56766433 444566665566788889999999999999999999999999999999954 4566999999999999999
Q ss_pred HHHHHHHHHHhc-----C---CCEEEEEeCCCccCCcCCC--CCcccchhhhhccccccceeeeeeeccCcccCccccch
Q 001560 924 QAVRDIFSKATA-----A---APCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDI 993 (1052)
Q Consensus 924 ~~ir~lf~~A~~-----~---~p~ILfiDEid~l~~~r~~--~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 993 (1052)
.++|.+|+.|.+ + .-.|++|||||+++.+||+ +++|+.|.+|||
T Consensus 303 ~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQ-------------------------- 356 (744)
T KOG0741|consen 303 ENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQ-------------------------- 356 (744)
T ss_pred HHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHH--------------------------
Confidence 999999998843 1 2249999999999999987 457899999999
Q ss_pred hhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 994 YILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 994 ~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||+.|||++...+++||+-||| |||||..++++.|||.+=
T Consensus 357 ----------------LLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~g 405 (744)
T KOG0741|consen 357 ----------------LLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKG 405 (744)
T ss_pred ----------------HHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccC
Confidence 9999999999999999999999 999999999999999763
No 68
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.90 E-value=4.7e-23 Score=252.79 Aligned_cols=248 Identities=21% Similarity=0.283 Sum_probs=195.1
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEE
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v 627 (1052)
.+...+.++.|.+..++.+.+.+..+.. +..+...+...++++||+||||||||++++++|++++ .+++.+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~---~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~------~~f~~i 216 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLRE---PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFTI 216 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhC---HHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCEEEE
Confidence 3455677888888888887765554322 3344556677788899999999999999999999987 678889
Q ss_pred ecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCc
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
+++++.....+.....+++.|..+....|+||||||+|.++..+....+. ......+.++.|+..|+++....
T Consensus 217 s~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g-~~~~~~~~ln~lL~~mdg~~~~~------ 289 (644)
T PRK10733 217 SGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEGNE------ 289 (644)
T ss_pred ehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC-CchHHHHHHHHHHHhhhcccCCC------
Confidence 99887766666667778889999998999999999999998655432222 22334466677777788765432
Q ss_pred CcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~ 787 (1052)
.+++|++||+++.+|++++|+|||++++.++.|+.++|.+||+.++++..+. .+..+..++..+.||+++||..+|++
T Consensus 290 -~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~e 367 (644)
T PRK10733 290 -GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNE 367 (644)
T ss_pred -CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999998875443 23347789999999999999999999
Q ss_pred HHHHHHhhhcccCCccccccccccccccccccccccc
Q 001560 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1052)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1052)
|...+..+ ....++..||..|+....
T Consensus 368 Aa~~a~r~-----------~~~~i~~~d~~~a~~~v~ 393 (644)
T PRK10733 368 AALFAARG-----------NKRVVSMVEFEKAKDKIM 393 (644)
T ss_pred HHHHHHHc-----------CCCcccHHHHHHHHHHHh
Confidence 98877654 224577888887776543
No 69
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.9e-24 Score=226.24 Aligned_cols=245 Identities=19% Similarity=0.303 Sum_probs=191.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
..+|++++|....+-++.+.+. +....+.+|...++.+|.+++||||||+|||.+|+++|..++ ..++.+..
T Consensus 128 ~~s~~~~ggl~~qirelre~ie--lpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg------~nfl~v~s 199 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIE--LPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG------VNFLKVVS 199 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheE--eeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC------CceEEeeH
Confidence 3467788898888888888663 333456799999999999999999999999999999999998 77888999
Q ss_pred ccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
+.+...+.|+..+.+++.|..|..+.|||||+||+|.+.+.+ ..++.... ..+...|.++++.+.+.. ..+.
T Consensus 200 s~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr-~se~Ts~d---reiqrTLMeLlnqmdgfd----~l~r 271 (388)
T KOG0651|consen 200 SALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR-FSEGTSSD---REIQRTLMELLNQMDGFD----TLHR 271 (388)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE-eccccchh---HHHHHHHHHHHHhhccch----hccc
Confidence 999999999999999999999999999999999999998654 33333222 345555555555443321 2346
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
|-+|.|+|+++.|+|+|+|+||+++.+++|.|+...|..|++.+.+.... ..+-..+.+.+..+||.++|+++.|.+|-
T Consensus 272 Vk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Geid~eaivK~~d~f~gad~rn~~tEag 350 (388)
T KOG0651|consen 272 VKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEIDDEAILKLVDGFNGADLRNVCTEAG 350 (388)
T ss_pred ccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cccccHHHHHHHHhccChHHHhhhccccc
Confidence 89999999999999999999999999999999999999999865543221 12223677888899999999999998876
Q ss_pred HHHHhhhcccCCccccccccccccccccccccc
Q 001560 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1052)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1052)
.-++.. +...+..+||..++.+
T Consensus 351 ~Fa~~~-----------~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 351 MFAIPE-----------ERDEVLHEDFMKLVRK 372 (388)
T ss_pred ccccch-----------hhHHHhHHHHHHHHHH
Confidence 443322 2234566777776654
No 70
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.89 E-value=1.6e-22 Score=223.85 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=154.6
Q ss_pred cCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhc-----cCCeEE
Q 001560 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIV 659 (1052)
Q Consensus 585 ~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~-----~~PsIL 659 (1052)
.++.+|.+++||||||||||++|+++|++++ ..++.++..++.+++.|+.++.++++|..|.. .+||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg------~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMG------IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC------CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 4578999999999999999999999999998 78899999999999999999999999999875 479999
Q ss_pred EEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--cC---CccCcCcEEEEEecCCCCCCchhhhcCCCcce
Q 001560 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--RK---SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (1052)
Q Consensus 660 ~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~--~~---~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~ 734 (1052)
||||||.+++.+.+.+ .......+..+|+.++|..... .. .......|.||+|||+++.|+++|+|+|||++
T Consensus 217 FIDEIDA~~g~r~~~~---~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk 293 (413)
T PLN00020 217 FINDLDAGAGRFGTTQ---YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (413)
T ss_pred EEehhhhcCCCCCCCC---cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence 9999999997654221 1112223347888888763210 00 01123469999999999999999999999998
Q ss_pred eeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCC----CCHHHHHHHHHHHHHHHHhh
Q 001560 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG----YDAYDLEILVDRTVHAAVGR 795 (1052)
Q Consensus 735 ~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG----~s~~DL~~Lv~~A~~~a~~r 795 (1052)
.+ ..|+.++|.+||+.++++.+ ++...+..|+..++| |.++--..+.++++..-+.+
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 65 58999999999999988754 457778888888877 45554456666665554444
No 71
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.89 E-value=3.6e-22 Score=251.56 Aligned_cols=188 Identities=16% Similarity=0.259 Sum_probs=128.7
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc----ceeeEEEEe
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~~~v~~v~ 628 (1052)
+..+.|.+..+..+++-| .+. ...+++|+||||||||++++.+|..+..+.. ....++.++
T Consensus 177 l~~vigr~~ei~~~i~iL---~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVL---QRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCcCCCCHHHHHHHHHHH---hcC------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 445677777655444422 111 1256999999999999999999999853211 125677787
Q ss_pred ccccc--CCchhhHHHHhhhhHHHhhc-cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 001560 629 CSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1052)
Q Consensus 629 ~s~L~--~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1052)
...+. ..+.++.++.++.+|.++.. ..+.||||||+|.+.+.+.. +++ .. ..+.|...+.
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~-~~~--~d----~~~~lkp~l~---------- 304 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-DGA--MD----AGNMLKPALA---------- 304 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC-ccc--hh----HHHHhcchhh----------
Confidence 77765 44668888889999987543 56899999999999864321 111 11 2233333221
Q ss_pred CcCcEEEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhc----cCCCCHHHHHHHhhhcCCC
Q 001560 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR----SLECSDEILLDVASKCDGY 776 (1052)
Q Consensus 706 ~~~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~----~~~~sd~~l~~La~~teG~ 776 (1052)
.|.+.+||+|+..+ .+|+++.| ||+ .|.++.|+.+++.+|++.+..+. ++.++++.+...+..+++|
T Consensus 305 -~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 305 -RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred -cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 13589999999876 47999999 998 68899999999999998766542 3456677766655555444
No 72
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.89 E-value=6.2e-23 Score=237.11 Aligned_cols=172 Identities=37% Similarity=0.588 Sum_probs=151.7
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
+...|++++|+++.++.+++.+.+++.+++.|...|+.++.++||+||||||||++|+++|+.++.+|+.+.++++..+|
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhh
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVN 998 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 998 (1052)
+|+++..++.+|+.|+...|+||||||+|.++.+|..+..+....+ +.
T Consensus 197 ~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~-~~------------------------------- 244 (364)
T TIGR01242 197 IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREV-QR------------------------------- 244 (364)
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHH-HH-------------------------------
Confidence 9999999999999999999999999999999987764332211111 11
Q ss_pred hcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 999 FLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 999 ~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
.+.++|.+++++...++++||+|||+ ||||||+.|+|++|+.+-
T Consensus 245 -------~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 245 -------TLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred -------HHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence 12338899999877789999999998 899999999999998753
No 73
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.7e-23 Score=235.77 Aligned_cols=168 Identities=32% Similarity=0.558 Sum_probs=152.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
.+.|+++.|++.+++.+.+.+.||...++.|..+. .+..++||.||||+|||++++|+|.+++..|+.++++.|.++|+
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~ 227 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV 227 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence 48999999999999999999999999999998754 45568999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhhh
Q 001560 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNF 999 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 999 (1052)
|++|+.+|.+|.-|+..+|+|+||||+|+++.+|.....+...|+..+
T Consensus 228 Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~kte-------------------------------- 275 (428)
T KOG0740|consen 228 GESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTE-------------------------------- 275 (428)
T ss_pred ChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhH--------------------------------
Confidence 999999999999999999999999999999999977677777777777
Q ss_pred cccccchhHHHhhhhcCCcc--cCCeEEEEeCCC-------CCCCcceEEEecCCccccc
Q 001560 1000 LISACPCFQQFLTELDGVEV--LTGVFVFAATRL-------EFFHYNVLLFCSFIIFLIL 1050 (1052)
Q Consensus 1000 ~~~~~~~~~~lL~~ldg~~~--~~~v~vi~aTn~-------r~gRfd~~i~~~~p~~~~~ 1050 (1052)
||.+.+|... .++|+||+|||+ ..+||-+.+|+++|+++..
T Consensus 276 ----------fLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr 325 (428)
T KOG0740|consen 276 ----------FLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETR 325 (428)
T ss_pred ----------HHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHH
Confidence 7888887653 458999999999 3349999999999999853
No 74
>CHL00176 ftsH cell division protein; Validated
Probab=99.88 E-value=8.3e-23 Score=247.86 Aligned_cols=167 Identities=31% Similarity=0.538 Sum_probs=149.7
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
...|+|++|++++++.+.+.+.. ++.++.|...+...+.++||+||||||||++|+++|.+++.+|+.++++++...|.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV 257 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence 47899999999999999998875 67888888889999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCc---ccchhhhhccccccceeeeeeeccCcccCccccchhhh
Q 001560 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYIL 996 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~---~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 996 (1052)
|.....++++|+.|+...||||||||+|.++.+|+.+.. ......+++
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~----------------------------- 308 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQ----------------------------- 308 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999988764322 222334455
Q ss_pred hhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCcccc
Q 001560 997 VNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 997 ~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||++|||+....+++||+|||+ ||||||+.+++++|+.+.
T Consensus 309 -------------LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 309 -------------LLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred -------------HHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHH
Confidence 9999999988889999999999 899999999999999764
No 75
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.86 E-value=6.8e-22 Score=249.86 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=111.0
Q ss_pred hhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh----------hc-----------------
Q 001560 868 NIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY----------IG----------------- 920 (1052)
Q Consensus 868 ~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y----------vG----------------- 920 (1052)
....+.|..+++|+||+||||||||.+|+|+|.+++.||+.+++++++++| +|
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 344567888999999999999999999999999999999999999999765 22
Q ss_pred --------------ccHH--HHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchh-hhhccccccceeeeeeeccC
Q 001560 921 --------------ASEQ--AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDR-VVNQVSSTSYLFIIYFWEVG 983 (1052)
Q Consensus 921 --------------ese~--~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r-~v~~~~~~~~~~i~~~~~~~ 983 (1052)
+++. .++.+|+.|++.+||||||||||+++.+.. ++ .+++
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~q---------------- 1756 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGL---------------- 1756 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHH----------------
Confidence 2333 389999999999999999999999986411 11 2444
Q ss_pred cccCccccchhhhhhhcccccchhHHHhhhhcCCc---ccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 984 KKEGVVPYDIYILVNFLISACPCFQQFLTELDGVE---VLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~---~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
||++|||.. +.++|+||||||+ ||||||+.|++++|+..
T Consensus 1757 --------------------------LLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p 1807 (2281)
T CHL00206 1757 --------------------------LVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIP 1807 (2281)
T ss_pred --------------------------HHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCch
Confidence 999999864 4568999999999 99999999999999863
No 76
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.85 E-value=3.1e-21 Score=236.80 Aligned_cols=166 Identities=29% Similarity=0.558 Sum_probs=147.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
...|.++.|.+..++.+.+.+.+ .+.+..+...+...+.|+||+||||||||++|+++|++++.+|+.++++++.+.|+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 46799999999999999998886 45666677777778889999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCc---ccchhhhhccccccceeeeeeeccCcccCccccchhhh
Q 001560 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYIL 996 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~---~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 996 (1052)
|.++..++.+|+.|+..+||||||||+|+++.+|+.+.. ....+++|+
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~----------------------------- 277 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ----------------------------- 277 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999988865322 223345565
Q ss_pred hhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 997 VNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 997 ~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
||.+|||+....+++||+|||+ ||||||+.++|++|+.+
T Consensus 278 -------------lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 278 -------------MLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred -------------HHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 9999999998899999999999 99999999999999964
No 77
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.79 E-value=1.1e-18 Score=192.66 Aligned_cols=223 Identities=18% Similarity=0.201 Sum_probs=157.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCC---CCCceEEEEcCCCchHHHHHHHHHHHhccCc-cceeeEEEE
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL---PLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFV 627 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~---~~p~~vLL~GppGTGKTtLAraLA~~L~~~~-~~~~~v~~v 627 (1052)
.+.++.|++.+++.+.+......... .....|. +...++||+||||||||++|+++|+.+.... ....+++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~---~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINE---KRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHH---HHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 45678899998888877654332111 1111222 3345799999999999999999999874221 122467788
Q ss_pred ecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCc
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
+|+++.+.+.++....+.++|..+. ++||||||+|.|.. +.+. ......++.|...++....
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~---~~~~----~~~~~~i~~Ll~~~e~~~~-------- 142 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR---GGEK----DFGKEAIDTLVKGMEDNRN-------- 142 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc---CCcc----chHHHHHHHHHHHHhccCC--------
Confidence 9999998888888888888887764 57999999999952 1111 1112345556666665432
Q ss_pred CcEEEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc---------
Q 001560 708 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC--------- 773 (1052)
Q Consensus 708 ~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t--------- 773 (1052)
.+++|+++...+ .+++++.+ ||...++||+++.+++.+|++.++...+..++++.+..++...
T Consensus 143 -~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~ 219 (261)
T TIGR02881 143 -EFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSR 219 (261)
T ss_pred -CEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCC
Confidence 356666554322 36788988 9998999999999999999999999888888888877664321
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcc
Q 001560 774 DGYDAYDLEILVDRTVHAAVGRYLH 798 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~~~a~~r~~~ 798 (1052)
..-+++.+.++++.|......|.+.
T Consensus 220 ~~gn~R~~~n~~e~a~~~~~~r~~~ 244 (261)
T TIGR02881 220 EFSNARYVRNIIEKAIRRQAVRLLD 244 (261)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhc
Confidence 1236788999999998887777653
No 78
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.78 E-value=1.2e-18 Score=170.96 Aligned_cols=121 Identities=38% Similarity=0.647 Sum_probs=107.1
Q ss_pred eeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCC-CEEEEEeCCCccCCcCCCCCcc
Q 001560 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNTG 959 (1052)
Q Consensus 881 iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~-p~ILfiDEid~l~~~r~~~~~~ 959 (1052)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+++++.++++|+.|.... ||||||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999999999999999999999998887 9999999999999887444445
Q ss_pred cchhhhhccccccceeeeeeeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCccc-CCeEEEEeCCC-------
Q 001560 960 VTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVL-TGVFVFAATRL------- 1031 (1052)
Q Consensus 960 ~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~-~~v~vi~aTn~------- 1031 (1052)
...+++++ |+..++..... .+++||+|||.
T Consensus 81 ~~~~~~~~------------------------------------------L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~ 118 (132)
T PF00004_consen 81 FEQRLLNQ------------------------------------------LLSLLDNPSSKNSRVIVIATTNSPDKIDPA 118 (132)
T ss_dssp HHHHHHHH------------------------------------------HHHHHHTTTTTSSSEEEEEEESSGGGSCHH
T ss_pred ccccccce------------------------------------------eeecccccccccccceeEEeeCChhhCCHh
Confidence 55566666 88888887665 56999999999
Q ss_pred --CCCCcceEEEecC
Q 001560 1032 --EFFHYNVLLFCSF 1044 (1052)
Q Consensus 1032 --r~gRfd~~i~~~~ 1044 (1052)
| +||++.+++++
T Consensus 119 l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 119 LLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHS-TTSEEEEEE-S
T ss_pred HHh-CCCcEEEEcCC
Confidence 7 99999999975
No 79
>CHL00181 cbbX CbbX; Provisional
Probab=99.76 E-value=1e-17 Score=186.56 Aligned_cols=222 Identities=16% Similarity=0.158 Sum_probs=154.9
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCC---CceEEEEcCCCchHHHHHHHHHHHhccC-ccceeeEEEEecc
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPL---PGHILIHGPPGSGKTSLAKAVAKSLEHH-KDLVAHIVFVCCS 630 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~---p~~vLL~GppGTGKTtLAraLA~~L~~~-~~~~~~v~~v~~s 630 (1052)
+++|++.+++.+.+.+..+.- ...+...+..+ +.++||+||||||||++|+++|+.+... .....+++.+++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~---~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLI---DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHH---HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 578898888877775543221 12233334433 3469999999999999999999987522 1112457888888
Q ss_pred cccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcE
Q 001560 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1052)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1052)
++.+.+.+........++..+ .++||||||+|.+.... ... .......+.|...|+.... .+
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~--~~~----~~~~e~~~~L~~~me~~~~---------~~ 162 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPD--NER----DYGSEAIEILLQVMENQRD---------DL 162 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCC--Ccc----chHHHHHHHHHHHHhcCCC---------CE
Confidence 887777666555566677765 34799999999986421 111 1123556677777765321 46
Q ss_pred EEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhh------cCCCC-H
Q 001560 711 AFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK------CDGYD-A 778 (1052)
Q Consensus 711 ~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~------teG~s-~ 778 (1052)
++|++++... .++|.+.+ ||+.+++|++|+.+++.+|++.++++.+..++++....+... .+.|. +
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNa 240 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANA 240 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccH
Confidence 7777765422 34688988 999999999999999999999999988888877765444332 23344 8
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 001560 779 YDLEILVDRTVHAAVGRYLHS 799 (1052)
Q Consensus 779 ~DL~~Lv~~A~~~a~~r~~~~ 799 (1052)
++++++++++......|....
T Consensus 241 R~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 241 RSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998888887543
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=1.7e-17 Score=184.95 Aligned_cols=221 Identities=17% Similarity=0.162 Sum_probs=157.2
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCC---CCceEEEEcCCCchHHHHHHHHHHHhccCcc-ceeeEEEEecc
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLP---LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFVCCS 630 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~---~p~~vLL~GppGTGKTtLAraLA~~L~~~~~-~~~~v~~v~~s 630 (1052)
+++|++.+++.+.+.+..+.- ...+...|+. ++.++||+||||||||++|+++|+.+..... ...+++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~---~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLV---ERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHH---HHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 578888888887775544321 1233334443 3448999999999999999999998853221 12368888888
Q ss_pred cccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcE
Q 001560 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1052)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1052)
++.+.+.+.....+.++|..+ .+++|||||++.+.+.+. + ........+.|...|+... ..+
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~----~~~~~~~~~~Ll~~le~~~---------~~~ 161 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--E----RDYGQEAIEILLQVMENQR---------DDL 161 (284)
T ss_pred HHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--c----cchHHHHHHHHHHHHhcCC---------CCE
Confidence 887666666556667777766 347999999999863211 1 1122345566777776432 147
Q ss_pred EEEEecCCC--C---CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhh-------cCCCCH
Q 001560 711 AFVASAQSL--E---KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK-------CDGYDA 778 (1052)
Q Consensus 711 ~vIattn~~--~---~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~-------teG~s~ 778 (1052)
++|++++.. + .++++|.+ ||...++||+++.+++.+|++.++.+....++++.+..++.. ..--++
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChH
Confidence 777776643 2 24789999 999999999999999999999999988888888877766554 122368
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 001560 779 YDLEILVDRTVHAAVGRYLH 798 (1052)
Q Consensus 779 ~DL~~Lv~~A~~~a~~r~~~ 798 (1052)
+.+++++++++.....|...
T Consensus 240 R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999888888653
No 81
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=99.74 E-value=3.3e-18 Score=146.96 Aligned_cols=80 Identities=26% Similarity=0.430 Sum_probs=54.7
Q ss_pred eEEEEeCCcccceeeCCHHHHHHHhhccccCCCCceEEEEEEeCCCCeEEEEecCCcC----CCCceEecHHHHhhcCCC
Q 001560 3 LEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATS----SSSFIEVARQFAECISLA 78 (1052)
Q Consensus 3 ~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~el~~~~~~~~~~gW~g~~s----~~~~iei~~~~a~~lgl~ 78 (1052)
+.|.|++ .||||++||++|++.|. +.|+++||++|+++.++|++|++.-+ +.+.+|||++||++|||+
T Consensus 4 vtv~f~n-~kdCFL~Lp~~l~~~L~-------L~q~qAvEvsWg~~~pvfLSW~e~r~~~~~~en~~EinrqlgeKLGl~ 75 (87)
T PF09263_consen 4 VTVVFNN-AKDCFLHLPSRLASQLH-------LQQNQAVEVSWGHQSPVFLSWVEGRSFSDQGENVAEINRQLGEKLGLS 75 (87)
T ss_dssp EEEEEE---SSS-EEE-HHHHHHTT---------TT--EEEESSS---EEE-EEE-SS-------EEEEEHHHHHHTT--
T ss_pred EEEEecC-CcceEEECCHHHHHHHH-------HhhCceEEEEeCCCCcEEEEeecccccCCccccHHHHHHHHHHhhCCC
Confidence 5677877 99999999999999998 46999999999997799999998543 248999999999999999
Q ss_pred CCCEEEEEEecC
Q 001560 79 DHTIVQVRVVSN 90 (1052)
Q Consensus 79 ~~~~v~~~~~~~ 90 (1052)
||++|++++|.+
T Consensus 76 dGeQvfLrpCs~ 87 (87)
T PF09263_consen 76 DGEQVFLRPCSH 87 (87)
T ss_dssp TT-EEEEEE-S-
T ss_pred cCCeEeeeeCCC
Confidence 999999999863
No 82
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.71 E-value=8e-17 Score=157.97 Aligned_cols=130 Identities=30% Similarity=0.486 Sum_probs=110.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccC-CeEEEEeccchhccCC
Q 001560 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSS 671 (1052)
Q Consensus 593 vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~-PsIL~IDEiD~L~~~~ 671 (1052)
|||+||||||||++|+.+|+.++ .+++.+++..+.+.+.+...+.+..+|..+.... |+||||||+|.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------cccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 69999999999999999999997 8899999999998888899999999999998777 9999999999998644
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCC
Q 001560 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 739 (1052)
Q Consensus 672 ~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~ 739 (1052)
..........+.+.|...++...... .++.+|+|+|.++.+++.+.+ +||+..+++|
T Consensus 75 ----~~~~~~~~~~~~~~L~~~l~~~~~~~------~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 75 ----QPSSSSFEQRLLNQLLSLLDNPSSKN------SRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp ----STSSSHHHHHHHHHHHHHHHTTTTTS------SSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ----ccccccccccccceeeeccccccccc------ccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 12233445577888888888776542 259999999999999999997 7999999886
No 83
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.3e-17 Score=178.79 Aligned_cols=167 Identities=22% Similarity=0.332 Sum_probs=136.6
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCC-cccCCceeEecCCCCchhhHHHHHHHHc---------CCeEEEee
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVK 910 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~lA~alA~~~---------~~~~i~v~ 910 (1052)
..|+.++--..+|+.+..+....+...+...+.. +...+-+||+||||||||+++|++|+.+ ...+++++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 4688888888999999888776555544433322 3455679999999999999999999998 34689999
Q ss_pred chhhhhhhhcccHHHHHHHHHHHhc-----CCCEEEEEeCCCccCCcCCCC--Cc--ccchhhhhccccccceeeeeeec
Q 001560 911 GPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGHD--NT--GVTDRVVNQVSSTSYLFIIYFWE 981 (1052)
Q Consensus 911 ~s~l~~~yvGese~~ir~lf~~A~~-----~~p~ILfiDEid~l~~~r~~~--~~--~~~~r~v~~~~~~~~~~i~~~~~ 981 (1052)
+..+++||++|+.+.+..+|+.... +.--+++|||+++|+..|... ++ .-.-|+||.
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNa-------------- 284 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNA-------------- 284 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHH--------------
Confidence 9999999999999999999988744 233478899999999888432 22 234478898
Q ss_pred cCcccCccccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC-------CCCCcceEEEecCCcccc
Q 001560 982 VGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL-------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~-------r~gRfd~~i~~~~p~~~~ 1049 (1052)
+||+||.+....+|++++|+|. +-.|=|-..|++.|..+-
T Consensus 285 ----------------------------lLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 285 ----------------------------LLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred ----------------------------HHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHH
Confidence 9999999999999999999999 888999999999998754
No 84
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.7e-16 Score=177.45 Aligned_cols=162 Identities=16% Similarity=0.255 Sum_probs=130.9
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhc
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvG 920 (1052)
.+++.+.-..+.|+.+.+-+....+..+.|.+.|...++|.|||||||||||+++.|+|+.++..++-++.++. +
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-----~ 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-----K 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-----c
Confidence 68999999999999999999989999999999999999999999999999999999999999999999988763 3
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCc---ccchhhhhccccccceeeeeeeccCcccCccccchhhhh
Q 001560 921 ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILV 997 (1052)
Q Consensus 921 ese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~---~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 997 (1052)
.... +|.++-.+.. .+||+|++||.-+.-|+.... +... +. .
T Consensus 273 ~n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~---~~---------------------~-------- 317 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEG---DL---------------------S-------- 317 (457)
T ss_pred CcHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccC---Cc---------------------c--------
Confidence 3333 8888887644 469999999998764432211 1110 00 0
Q ss_pred hhcccccchhHHHhhhhcCCcccC--CeEEEEeCCC---------CCCCcceEEEecCCccc
Q 001560 998 NFLISACPCFQQFLTELDGVEVLT--GVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 998 ~~~~~~~~~~~~lL~~ldg~~~~~--~v~vi~aTn~---------r~gRfd~~i~~~~p~~~ 1048 (1052)
..++..||+.+||+-+.- ..|||+|||+ ||||.|++||+++-.++
T Consensus 318 ------~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~ 373 (457)
T KOG0743|consen 318 ------RVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFE 373 (457)
T ss_pred ------eeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHH
Confidence 123444999999998765 6899999999 99999999999988765
No 85
>CHL00181 cbbX CbbX; Provisional
Probab=99.66 E-value=2.2e-16 Score=175.88 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=121.8
Q ss_pred ccccccchhHHHHHHHHhhcccCChhhhhcCCccc---CCceeEecCCCCchhhHHHHHHHHc-------CCeEEEeech
Q 001560 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRL---RSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGP 912 (1052)
Q Consensus 843 ~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~---~~~iLL~GppGtGKT~lA~alA~~~-------~~~~i~v~~s 912 (1052)
+++++|++++|+.+++.+.+ ..+...+...|... +.++||+||||||||++|+++|..+ ..+++.++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999999887 34556666566533 3469999999999999999999875 2369999999
Q ss_pred hhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccc
Q 001560 913 ELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYD 992 (1052)
Q Consensus 913 ~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~ 992 (1052)
++.++|+|+++..++++|+.|.. +||||||+|.+...++. ++....+++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~--~~~~~e~~~~------------------------- 150 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE--RDYGSEAIEI------------------------- 150 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc--cchHHHHHHH-------------------------
Confidence 99999999999999999999855 49999999999754432 2233445555
Q ss_pred hhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC------------CCCCcceEEEecCCccc
Q 001560 993 IYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL------------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 993 ~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~------------r~gRfd~~i~~~~p~~~ 1048 (1052)
|+..|+.. ..+++||+|++. ..+||+..|+|+.++.+
T Consensus 151 -----------------L~~~me~~--~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 151 -----------------LLQVMENQ--RDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred -----------------HHHHHhcC--CCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 77778642 356888888874 46799999999988764
No 86
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=2.7e-15 Score=157.26 Aligned_cols=195 Identities=18% Similarity=0.275 Sum_probs=125.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
.+++..|.+..++.+.-.+...... ..+..|+|||||||+||||||+.+|++++ ..+..++...
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r----------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~------~~~~~~sg~~ 85 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR----------GEALDHMLFYGPPGLGKTTLARIIANELG------VNFKITSGPA 85 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT----------TS---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEECCC
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc----------CCCcceEEEECCCccchhHHHHHHHhccC------CCeEeccchh
Confidence 3556777877776654444333211 12336799999999999999999999998 5566665543
Q ss_pred ccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----ccCC---
Q 001560 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRKS--- 703 (1052)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~-----~~~~--- 703 (1052)
+. ..+++...+.. . ....||||||||.+-. ...+.|+..|+...- ++..
T Consensus 86 i~--k~~dl~~il~~----l--~~~~ILFIDEIHRlnk---------------~~qe~LlpamEd~~idiiiG~g~~ar~ 142 (233)
T PF05496_consen 86 IE--KAGDLAAILTN----L--KEGDILFIDEIHRLNK---------------AQQEILLPAMEDGKIDIIIGKGPNARS 142 (233)
T ss_dssp ----SCHHHHHHHHT--------TT-EEEECTCCC--H---------------HHHHHHHHHHHCSEEEEEBSSSSS-BE
T ss_pred hh--hHHHHHHHHHh----c--CCCcEEEEechhhccH---------------HHHHHHHHHhccCeEEEEeccccccce
Confidence 32 23444333322 2 3567999999999841 456778888886431 1111
Q ss_pred -ccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHH
Q 001560 704 -SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1052)
Q Consensus 704 -~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~ 782 (1052)
.....++.+|++|++...+...|+. ||....++..++.++..+|++.-....++.++++....+|.++.| +|+=..
T Consensus 143 ~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 143 IRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIAN 219 (233)
T ss_dssp EEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHH
T ss_pred eeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHH
Confidence 1123468999999999999999999 999888999999999999999888888889999999999999998 676555
Q ss_pred HHHHHH
Q 001560 783 ILVDRT 788 (1052)
Q Consensus 783 ~Lv~~A 788 (1052)
++++++
T Consensus 220 rll~rv 225 (233)
T PF05496_consen 220 RLLRRV 225 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 87
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.3e-15 Score=170.05 Aligned_cols=208 Identities=14% Similarity=0.204 Sum_probs=144.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
.|..+.=-...++.|++.+..+.. ...+|.+.|.+..+|.|||||||||||+++.|+|++|. ..+.-++.+.
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k--~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~------ydIydLeLt~ 270 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIK--GKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN------YDIYDLELTE 270 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHh--cchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC------CceEEeeecc
Confidence 345555333466778888877754 45789999999999999999999999999999999998 5666665555
Q ss_pred ccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCC--CCc-hhHHHHHHHHHHHHHHhccccCCccCcC
Q 001560 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGS--QPS-TSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1052)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~--~~~-~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1052)
..... + ++.++... ...+||+|+|||.-+..+...... ... ....-.+.-|++.+|++..... +
T Consensus 271 v~~n~--d----Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-----~ 337 (457)
T KOG0743|consen 271 VKLDS--D----LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-----D 337 (457)
T ss_pred ccCcH--H----HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-----C
Confidence 44332 2 44444433 455899999999976422211110 000 1112345567777887765322 2
Q ss_pred cEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCC--CCHHHHHH
Q 001560 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG--YDAYDLEI 783 (1052)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG--~s~~DL~~ 783 (1052)
.-++|+|||..+.|||+|.||||++.+|++..-+.++-..+++.++.-.. +...+..+.+..++ .+|+|+..
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHH
Confidence 46899999999999999999999999999999999999999998876432 22334444443333 37777654
No 88
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.7e-15 Score=162.27 Aligned_cols=184 Identities=17% Similarity=0.261 Sum_probs=127.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccC-CeEEEEeccchh
Q 001560 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSI 667 (1052)
Q Consensus 589 ~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~-PsIL~IDEiD~L 667 (1052)
+=++||||||||||||++||.||+.-+.+ +-.+...+...... ..-..|.++|+-+.... .-+|||||+|.+
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlD------YA~mTGGDVAPlG~-qaVTkiH~lFDWakkS~rGLllFIDEADAF 455 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLD------YAIMTGGDVAPLGA-QAVTKIHKLFDWAKKSRRGLLLFIDEADAF 455 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCc------eehhcCCCccccch-HHHHHHHHHHHHHhhcccceEEEehhhHHH
Confidence 34679999999999999999999987732 22233333332221 12235778888776543 458899999999
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHH
Q 001560 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1052)
Q Consensus 668 ~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~ 747 (1052)
+..+.....+ +....-++ .++-...... ..++++.++|+|.++|.++.. ||+..++||.|..++|.
T Consensus 456 LceRnktymS---EaqRsaLN---AlLfRTGdqS------rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERf 521 (630)
T KOG0742|consen 456 LCERNKTYMS---EAQRSALN---ALLFRTGDQS------RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERF 521 (630)
T ss_pred HHHhchhhhc---HHHHHHHH---HHHHHhcccc------cceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHH
Confidence 8655444322 22222222 2222222211 158899999999999999998 99999999999999999
Q ss_pred HHHHHHHhhcc----------------------CC----CCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 001560 748 AILEHEIQRRS----------------------LE----CSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1052)
Q Consensus 748 ~IL~~~l~~~~----------------------~~----~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~ 793 (1052)
.+|..|+.++- +. ..+..+...|+.|+||++++|..|+-.....++
T Consensus 522 kll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavY 593 (630)
T KOG0742|consen 522 KLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVY 593 (630)
T ss_pred HHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Confidence 99998876431 11 223457789999999999999988765544443
No 89
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.64 E-value=7.6e-16 Score=171.70 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=120.5
Q ss_pred ccccchhHHHHHHHHhhcccCChhhhhcCCcc---cCCceeEecCCCCchhhHHHHHHHHc-------CCeEEEeechhh
Q 001560 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGPEL 914 (1052)
Q Consensus 845 ~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~---~~~~iLL~GppGtGKT~lA~alA~~~-------~~~~i~v~~s~l 914 (1052)
+++|++++|+.+.+.+.+ ..+++.+...|+. +..++||+||||||||++|+++|+.+ ..+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999999887 5666777766764 34589999999999999999998876 237999999999
Q ss_pred hhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchh
Q 001560 915 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIY 994 (1052)
Q Consensus 915 ~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 994 (1052)
+++|+|+++.+++++|+.|.. ++|||||++.+.+.+. .......+.+.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~--------------------------- 149 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEI--------------------------- 149 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHH---------------------------
Confidence 999999999999999999855 5999999999975432 22233444555
Q ss_pred hhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC------------CCCCcceEEEecCCcc
Q 001560 995 ILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL------------EFFHYNVLLFCSFIIF 1047 (1052)
Q Consensus 995 ~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~------------r~gRfd~~i~~~~p~~ 1047 (1052)
|+..|+. ...+++||+||+. ..+||+..|+|+.++.
T Consensus 150 ---------------Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 150 ---------------LLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred ---------------HHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 7788864 2357888888764 4468888888887764
No 90
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.3e-15 Score=163.73 Aligned_cols=213 Identities=20% Similarity=0.233 Sum_probs=148.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhccC---ccceeeEEEEecccccCCchhhHHHHhhhhHHHhhcc---CC--eEE
Q 001560 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH---AP--SIV 659 (1052)
Q Consensus 588 ~~p~~vLL~GppGTGKTtLAraLA~~L~~~---~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~---~P--sIL 659 (1052)
..++-+||+||||||||+|++++|+.|.-+ .-.....+.++|..+..+++++..+.+..+|+..... .. -.+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 344669999999999999999999998733 1122568889999999999998888888888765431 22 256
Q ss_pred EEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCC
Q 001560 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 739 (1052)
Q Consensus 660 ~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~ 739 (1052)
+|||.++|...+........+....++.+.++..+|.+... ++|++++|+|-.+++|.++.. |-+-++++.
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-------~NvliL~TSNl~~siD~AfVD--RADi~~yVG 325 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-------PNVLILATSNLTDSIDVAFVD--RADIVFYVG 325 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-------CCEEEEeccchHHHHHHHhhh--HhhheeecC
Confidence 79999999875532222222233447788888889987654 369999999999999999998 889899999
Q ss_pred CCCHHHHHHHHHHHHhhc---cCCC----C----------HHHHHHHhhh-cCCCCHHHHHHHHHHHHHHHHhhhcccCC
Q 001560 740 APAASERKAILEHEIQRR---SLEC----S----------DEILLDVASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDS 801 (1052)
Q Consensus 740 ~Pd~~eR~~IL~~~l~~~---~~~~----s----------d~~l~~La~~-teG~s~~DL~~Lv~~A~~~a~~r~~~~~~ 801 (1052)
+|+...|.+|++..+... ++-. + +.....++.. +.|.+|+.|+.|---|. ..+.+
T Consensus 326 ~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Lah-a~y~~------ 398 (423)
T KOG0744|consen 326 PPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAH-AEYFR------ 398 (423)
T ss_pred CccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHH-HhccC------
Confidence 999999999999877631 1110 1 1111222222 47888887776643332 22222
Q ss_pred ccccccccccccccccccccc
Q 001560 802 SFEKHIKPTLVRDDFSQAMHE 822 (1052)
Q Consensus 802 ~~~~~~~~~lt~eDf~~Al~~ 822 (1052)
..+++.++|..|+..
T Consensus 399 ------~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 399 ------TFTVDLSNFLLALLE 413 (423)
T ss_pred ------CCccChHHHHHHHHH
Confidence 145777777766544
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.59 E-value=3.3e-15 Score=165.06 Aligned_cols=106 Identities=26% Similarity=0.390 Sum_probs=87.2
Q ss_pred CccccccchhHHHHHHHHhhcccCChhhhhcCCc---ccCCceeEecCCCCchhhHHHHHHHHc-------CCeEEEeec
Q 001560 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL---RLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKG 911 (1052)
Q Consensus 842 ~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~---~~~~~iLL~GppGtGKT~lA~alA~~~-------~~~~i~v~~ 911 (1052)
.+++++|++++|+.+++.+.|+.... .....|. ....++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~-~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINE-KRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 35789999999999999988764432 2222333 234579999999999999999999874 347899999
Q ss_pred hhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 912 PELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 912 s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
+++.++|+|+++..++++|+.|.. +||||||+|.|..
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~ 119 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLAR 119 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhccC---CEEEEechhhhcc
Confidence 999999999999999999999854 5999999999963
No 92
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.59 E-value=5.6e-14 Score=160.41 Aligned_cols=200 Identities=18% Similarity=0.269 Sum_probs=139.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
.+.++.|.+..++.+...+...... ..++.++||+||||||||++|+++|++++ ..+..++...
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG~GKT~la~~ia~~l~------~~~~~~~~~~ 86 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKR----------GEALDHVLLYGPPGLGKTTLANIIANEMG------VNIRITSGPA 86 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCCccHHHHHHHHHHHhC------CCeEEEeccc
Confidence 4567788888877776655432211 23456799999999999999999999987 3333444332
Q ss_pred ccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----cc----C
Q 001560 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KR----K 702 (1052)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~-----~~----~ 702 (1052)
+. ..+. +..++... ..+++|||||+|.+.. ...+.|...++.... .. .
T Consensus 87 ~~--~~~~----l~~~l~~l--~~~~vl~IDEi~~l~~---------------~~~e~l~~~~e~~~~~~~l~~~~~~~~ 143 (328)
T PRK00080 87 LE--KPGD----LAAILTNL--EEGDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPAARS 143 (328)
T ss_pred cc--ChHH----HHHHHHhc--ccCCEEEEecHhhcch---------------HHHHHHHHHHHhcceeeeeccCccccc
Confidence 22 1122 22333322 4578999999999841 112234444443321 00 0
Q ss_pred CccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHH
Q 001560 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1052)
Q Consensus 703 ~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~ 782 (1052)
......++.+|++++....+++.+++ ||...+.+++|+.+++.+|++..+...+..++++.+..++..+.|+ ++.+.
T Consensus 144 ~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~ 220 (328)
T PRK00080 144 IRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIAN 220 (328)
T ss_pred eeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHH
Confidence 01112357899999999999999988 9988899999999999999999999889999999999999999984 57777
Q ss_pred HHHHHHHHHHH
Q 001560 783 ILVDRTVHAAV 793 (1052)
Q Consensus 783 ~Lv~~A~~~a~ 793 (1052)
.+++++.+.+.
T Consensus 221 ~~l~~~~~~a~ 231 (328)
T PRK00080 221 RLLRRVRDFAQ 231 (328)
T ss_pred HHHHHHHHHHH
Confidence 77777665544
No 93
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.56 E-value=1.1e-13 Score=156.43 Aligned_cols=198 Identities=17% Similarity=0.256 Sum_probs=135.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
++.++.|.+..++.+...+...... ...+.+++|+||||||||++|+++|++++. .+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------~~~~~~~~~ 65 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPGLGKTTLAHIIANEMGV------NLKITSGPA 65 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEeccch
Confidence 3567788888888776666433211 123467999999999999999999999873 333333322
Q ss_pred ccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----c----C
Q 001560 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-----R----K 702 (1052)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~-----~----~ 702 (1052)
.. ..+.+. ..+... ..+.+|||||+|.+.+ ...+.|...++..... . .
T Consensus 66 ~~--~~~~l~----~~l~~~--~~~~vl~iDEi~~l~~---------------~~~e~l~~~~~~~~~~~v~~~~~~~~~ 122 (305)
T TIGR00635 66 LE--KPGDLA----AILTNL--EEGDVLFIDEIHRLSP---------------AVEELLYPAMEDFRLDIVIGKGPSARS 122 (305)
T ss_pred hc--CchhHH----HHHHhc--ccCCEEEEehHhhhCH---------------HHHHHhhHHHhhhheeeeeccCccccc
Confidence 21 112222 222222 4567999999999842 1122344444433210 0 0
Q ss_pred CccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHH
Q 001560 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1052)
Q Consensus 703 ~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~ 782 (1052)
......++.+|++++.+..+++++++ ||...+.+++|+.+++.+|++..+...+..++++.+..+++.+.|+ ++.+.
T Consensus 123 ~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~ 199 (305)
T TIGR00635 123 VRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIAN 199 (305)
T ss_pred eeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHH
Confidence 00112357899999999999999988 9988899999999999999999988888889999999999999985 46777
Q ss_pred HHHHHHHHH
Q 001560 783 ILVDRTVHA 791 (1052)
Q Consensus 783 ~Lv~~A~~~ 791 (1052)
.+++.+...
T Consensus 200 ~ll~~~~~~ 208 (305)
T TIGR00635 200 RLLRRVRDF 208 (305)
T ss_pred HHHHHHHHH
Confidence 777766543
No 94
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.56 E-value=1e-13 Score=147.68 Aligned_cols=199 Identities=20% Similarity=0.300 Sum_probs=140.9
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccc
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L 632 (1052)
+.+..|....++.+.=.|...- ......-|+||+||||.||||||+.+|++++ ..+...+...+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk----------~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg------vn~k~tsGp~l 88 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAK----------KRGEALDHVLLFGPPGLGKTTLAHIIANELG------VNLKITSGPAL 88 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHH----------hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc------CCeEecccccc
Confidence 3455566555554433333221 1233457899999999999999999999998 33333332222
Q ss_pred cCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-----cccCC----
Q 001560 633 SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-----EKRKS---- 703 (1052)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~-----~~~~~---- 703 (1052)
...+++...+.. . ...+||||||||.+.+ .+-+.|...|+.+. +++..
T Consensus 89 --eK~gDlaaiLt~----L--e~~DVLFIDEIHrl~~---------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv 145 (332)
T COG2255 89 --EKPGDLAAILTN----L--EEGDVLFIDEIHRLSP---------------AVEEVLYPAMEDFRLDIIIGKGPAARSI 145 (332)
T ss_pred --cChhhHHHHHhc----C--CcCCeEEEehhhhcCh---------------hHHHHhhhhhhheeEEEEEccCCccceE
Confidence 233444333332 2 3457999999999953 34456777777664 22221
Q ss_pred ccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHH
Q 001560 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (1052)
Q Consensus 704 ~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~ 783 (1052)
....+++.+|++|.+...+...|+. ||....++..++.++..+|+.+.....++.++++....+|++..| +|+=..+
T Consensus 146 ~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnR 222 (332)
T COG2255 146 RLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANR 222 (332)
T ss_pred eccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHH
Confidence 2224589999999999999999999 999999999999999999999988888899999999999999988 6766666
Q ss_pred HHHHHHHHHH
Q 001560 784 LVDRTVHAAV 793 (1052)
Q Consensus 784 Lv~~A~~~a~ 793 (1052)
|++|....|.
T Consensus 223 LLrRVRDfa~ 232 (332)
T COG2255 223 LLRRVRDFAQ 232 (332)
T ss_pred HHHHHHHHHH
Confidence 6666654444
No 95
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2e-13 Score=167.54 Aligned_cols=144 Identities=17% Similarity=0.293 Sum_probs=99.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCcc----ceeeEEEEeccccc--CCchhhHHHHhhhhHHHhh-ccCCeEEEEec
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVCCSRLS--LEKGPIIRQALSNFISEAL-DHAPSIVIFDN 663 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~~~v~~v~~s~L~--~~~~~~~~~~l~~~f~~a~-~~~PsIL~IDE 663 (1052)
++-+|.|.||+|||.++.-+|+....+.. ....++.++...+. ..+.++++.+++.+..++. .....||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 55788899999999999999998875432 23456667766544 4566888999999999887 44567999999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCC-----CCchhhhcCCCcceeeeC
Q 001560 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQL 738 (1052)
Q Consensus 664 iD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i 738 (1052)
++.+.+.... ++ .....+.|...+.. +.+.+||+|+..+ .-+|++.+ ||+ .+.+
T Consensus 289 lh~lvg~g~~-~~------~~d~~nlLkp~L~r-----------g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v 347 (898)
T KOG1051|consen 289 LHWLVGSGSN-YG------AIDAANLLKPLLAR-----------GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLV 347 (898)
T ss_pred eeeeecCCCc-ch------HHHHHHhhHHHHhc-----------CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEe
Confidence 9999864332 11 11233333332221 2488999887433 34788888 998 5778
Q ss_pred CCCCHHHHHHHHHHHHh
Q 001560 739 PAPAASERKAILEHEIQ 755 (1052)
Q Consensus 739 ~~Pd~~eR~~IL~~~l~ 755 (1052)
+.|+.+....||...-.
T Consensus 348 ~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 348 PIPSVENLSLILPGLSE 364 (898)
T ss_pred ccCcccchhhhhhhhhh
Confidence 88888776777765443
No 96
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.52 E-value=2e-13 Score=171.93 Aligned_cols=213 Identities=21% Similarity=0.304 Sum_probs=138.5
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc-
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS- 633 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~- 633 (1052)
++.|++.+++.+.+.+....... ...+.++||+||||||||++|+++|+.++ .++..+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~---------~~~~~~lll~GppG~GKT~lAk~iA~~l~------~~~~~i~~~~~~~ 385 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG---------KMKGPILCLVGPPGVGKTSLGKSIAKALN------RKFVRFSLGGVRD 385 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc---------CCCCceEEEECCCCCCHHHHHHHHHHHhc------CCeEEEeCCCccc
Confidence 36678888887777654221110 12234699999999999999999999987 455555544321
Q ss_pred --------CCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh-----ccc
Q 001560 634 --------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY-----GEK 700 (1052)
Q Consensus 634 --------~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~-----~~~ 700 (1052)
..+.+.....+.+.|..+....| |+||||+|.+.+. ..+ .. ...|+..++.- ...
T Consensus 386 ~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~---~~~----~~----~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 386 EAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS---FRG----DP----ASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred HHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc---cCC----CH----HHHHHHhcCHHhcCccccc
Confidence 12223333344556666654445 8999999999632 111 11 22333333321 000
Q ss_pred -cCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHh-----hc-----cCCCCHHHHHHH
Q 001560 701 -RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RR-----SLECSDEILLDV 769 (1052)
Q Consensus 701 -~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~-----~~-----~~~~sd~~l~~L 769 (1052)
........++++|+|+|..+.++++|++ ||. .+.|+.|+.+++.+|++.++. .. .+.++++.+..+
T Consensus 454 ~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred cCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHH
Confidence 0001112368999999999999999999 996 799999999999999987762 22 245788888887
Q ss_pred hh-hcCCCCHHHHHHHHHHHHHHHHhhhc
Q 001560 770 AS-KCDGYDAYDLEILVDRTVHAAVGRYL 797 (1052)
Q Consensus 770 a~-~teG~s~~DL~~Lv~~A~~~a~~r~~ 797 (1052)
+. .+..+..++|+..+.+.+..+..+..
T Consensus 531 ~~~~~~e~g~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 531 IKYYTREAGVRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred HHhcChhcCChHHHHHHHHHHHHHHHHHH
Confidence 76 44556778888888887766655543
No 97
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1e-12 Score=153.33 Aligned_cols=194 Identities=18% Similarity=0.256 Sum_probs=136.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|.++.|.+..+..+...+. .. ..+..+||+||+||||||+|+.+|+.+.+....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~----~~----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALK----SG----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CHHHHhChHHHHHHHHHHHH----cC----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 35677788777766555442 11 122448999999999999999999998753210
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...+..+++.. ......++.....+..........|+||||+|.+-. ...+.|+..
T Consensus 82 ~~i~~g~~~dviEIdaas--~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS--NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhh--cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHHH
Confidence 01233444322 122344444444433333334557999999999831 234555666
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+++|.+|+.++.+++.+++ |.. .+.|..++.++..+.++..+...++.++++.+..|+...
T Consensus 145 LEEPp~---------~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S 212 (484)
T PRK14956 145 LEEPPA---------HIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG 212 (484)
T ss_pred hhcCCC---------ceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665332 58888888889999999999 765 688999999999999999998888999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
+| +.+|.-.++++++
T Consensus 213 ~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 213 DG-SVRDMLSFMEQAI 227 (484)
T ss_pred CC-hHHHHHHHHHHHH
Confidence 98 6888888887765
No 98
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2e-12 Score=155.76 Aligned_cols=195 Identities=17% Similarity=0.211 Sum_probs=140.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
+|+++.|.+..++.+++.+. . ...+..+||+||+|+||||+++.+|+.+.+....
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~----~----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALD----G----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHh----c----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 46678888887777666442 1 1123457999999999999999999999753210
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...++.++..+ ....++++..++............|+||||+|.|-. .-.+.|++.
T Consensus 80 r~I~~G~h~DviEIDAas--~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLKt 142 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS--NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLKT 142 (830)
T ss_pred HHHhcCCCceEEEecccc--cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHHH
Confidence 01344444432 233445555554443322233456999999999831 224556666
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+|+.++.|.+.+++ |+. .|.|..++.++..++|+..++..++.++++.+..|++.+
T Consensus 143 LEEPP~---------~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 143 LEEPPP---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210 (830)
T ss_pred HHhcCC---------CeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776543 47889999999999999998 775 799999999999999999998888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (1052)
.| +.+|..+++++++.
T Consensus 211 ~G-smRdALsLLdQAia 226 (830)
T PRK07003 211 QG-SMRDALSLTDQAIA 226 (830)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 98 56777777777663
No 99
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.44 E-value=1.7e-12 Score=139.90 Aligned_cols=192 Identities=23% Similarity=0.287 Sum_probs=135.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s 630 (1052)
..+.++.|.+.+..-+++.+..-. ..++|||||||||||+.|+++|+++......-..+...+.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~---------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRI---------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcC---------------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 345677778777777777653311 14599999999999999999999998633322334555666
Q ss_pred cccCCchhhHHHHhhhhHHHh-----hccCC----eEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 001560 631 RLSLEKGPIIRQALSNFISEA-----LDHAP----SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1052)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a-----~~~~P----sIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1052)
+-.|.... +.++...-+.. ....| -|++|||+|.+.. .-...|.+.|+.+..
T Consensus 98 derGisvv--r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 98 DERGISVV--REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTMEDFSR-- 158 (346)
T ss_pred ccccccch--hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHhcccc--
Confidence 66665532 22222211111 11112 4999999999852 334567777777544
Q ss_pred CCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHH
Q 001560 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDL 781 (1052)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL 781 (1052)
.+++|..||+.+.|+..+.+ |.. .+.|++...+.....|+.+..+.++.++++.+..+++.++| +-++.
T Consensus 159 -------~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~A 227 (346)
T KOG0989|consen 159 -------TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRA 227 (346)
T ss_pred -------ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 47899999999999999998 766 68899999988899999999999999999999999999988 33444
Q ss_pred HHHHHH
Q 001560 782 EILVDR 787 (1052)
Q Consensus 782 ~~Lv~~ 787 (1052)
..+++.
T Consensus 228 it~Lqs 233 (346)
T KOG0989|consen 228 ITTLQS 233 (346)
T ss_pred HHHHHH
Confidence 444443
No 100
>PRK06893 DNA replication initiation factor; Validated
Probab=99.43 E-value=2.2e-12 Score=139.68 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=113.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
..++||||||||||+|++++|+++.... ..+.+++....... ..+.+... .+..+|+|||++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~~~--------~~~~~~~~--~~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQYF--------SPAVLENL--EQQDLVCLDDLQAVIGN 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhhhh--------hHHHHhhc--ccCCEEEEeChhhhcCC
Confidence 3489999999999999999999875432 23455555422111 11222222 34579999999988531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCc---hhhhcCCCcceeeeCCCCCHHHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRFDFHVQLPAPAASERK 747 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld---~aL~r~gRF~~~i~i~~Pd~~eR~ 747 (1052)
... ...|...++.....+. .++++++...+..++ +.+.++.++...+.+++|+.++|.
T Consensus 107 ---------~~~----~~~l~~l~n~~~~~~~------~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 107 ---------EEW----ELAIFDLFNRIKEQGK------TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred ---------hHH----HHHHHHHHHHHHHcCC------cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 011 1123333333332211 245566666676654 788885566678999999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 748 ~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+|++..+..+++.++++++..|+.+.+| +.+.+..++++..
T Consensus 168 ~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 168 IVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 9999999888999999999999999987 6777777777654
No 101
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.7e-13 Score=149.28 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=115.1
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhc
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvG 920 (1052)
..+++++....+.+.+.++.... .+.. ....+-++||||||||||||++|+-||..+|+.+-...+.|+. ..-.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aT-aNTK----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~ 425 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIAT-ANTK----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGA 425 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHh-cccc----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccch
Confidence 34777777778888887765421 1110 1123446799999999999999999999999999888888753 2222
Q ss_pred ccHHHHHHHHHHHhcCCCE-EEEEeCCCccCCcCCCC-CcccchhhhhccccccceeeeeeeccCcccCccccchhhhhh
Q 001560 921 ASEQAVRDIFSKATAAAPC-LLFFDEFDSIAPKRGHD-NTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVN 998 (1052)
Q Consensus 921 ese~~ir~lf~~A~~~~p~-ILfiDEid~l~~~r~~~-~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 998 (1052)
+.-..|.++|+-|...... +|||||+|++...|... -++.+...+|.
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNA------------------------------- 474 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNA------------------------------- 474 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHH-------------------------------
Confidence 3346799999999765444 89999999999988653 34455556666
Q ss_pred hcccccchhHHHhhhhcCCcccCCeEEEEeCCC-------CCCCcceEEEecCCcccc
Q 001560 999 FLISACPCFQQFLTELDGVEVLTGVFVFAATRL-------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 999 ~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~-------r~gRfd~~i~~~~p~~~~ 1049 (1052)
||-.-. ...+.++++.|||+ ...|||..|.|+||..|-
T Consensus 475 -----------lLfRTG--dqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEE 519 (630)
T KOG0742|consen 475 -----------LLFRTG--DQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEE 519 (630)
T ss_pred -----------HHHHhc--ccccceEEEeccCCccchhHHHHhhhhheeecCCCChHH
Confidence 554432 22346788889998 677999999999998763
No 102
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.7e-12 Score=152.87 Aligned_cols=194 Identities=16% Similarity=0.199 Sum_probs=140.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------ 619 (1052)
.|.++.|.+..++.+.+.+.. ...+..+||+||+|+||||+|+.+|+.+.+...
T Consensus 14 tFddVIGQe~vv~~L~~al~~--------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQ--------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHh--------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 466788888887777665421 112345899999999999999999999986210
Q ss_pred -----------ceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHH
Q 001560 620 -----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1052)
Q Consensus 620 -----------~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~ 688 (1052)
....++.++..+ ....++++..++.+..........|+||||+|.|-. .-.+
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas--~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS--NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHH
Confidence 001344444432 234556666665544433334557999999999831 2345
Q ss_pred HHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHH
Q 001560 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1052)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~ 768 (1052)
.|++.+++... .+.+|.+|+.++.|.+.+++ |+. .+.|+.++.++..+.++..+...++.++++.+..
T Consensus 143 ALLKTLEEPP~---------~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~ 210 (700)
T PRK12323 143 AMLKTLEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRL 210 (700)
T ss_pred HHHHhhccCCC---------CceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56666666433 47888889999999999998 764 7899999999999999998888888899999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHH
Q 001560 769 VASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 769 La~~teG~s~~DL~~Lv~~A~ 789 (1052)
|+..+.| +.++...++++++
T Consensus 211 IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 211 LAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9999888 6778877777765
No 103
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.42 E-value=6.2e-13 Score=139.69 Aligned_cols=115 Identities=22% Similarity=0.368 Sum_probs=74.0
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
+..+++++|+++++..++-.+...... -..-.++|||||||+|||++|+.+|++++.+|...+++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 368999999999999987666532111 12235799999999999999999999999999998886532
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeee
Q 001560 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFII 977 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~ 977 (1052)
....+..++.... ...|||||||+.+-. ..++-++..||++...+++
T Consensus 88 --k~~dl~~il~~l~--~~~ILFIDEIHRlnk-------~~qe~LlpamEd~~idiii 134 (233)
T PF05496_consen 88 --KAGDLAAILTNLK--EGDILFIDEIHRLNK-------AQQEILLPAMEDGKIDIII 134 (233)
T ss_dssp --SCHHHHHHHHT----TT-EEEECTCCC--H-------HHHHHHHHHHHCSEEEEEB
T ss_pred --hHHHHHHHHHhcC--CCcEEEEechhhccH-------HHHHHHHHHhccCeEEEEe
Confidence 1234455555543 346999999999943 4456667777766654443
No 104
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.42 E-value=3.7e-12 Score=153.70 Aligned_cols=229 Identities=16% Similarity=0.202 Sum_probs=144.3
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCc----cceeeEEE
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVF 626 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~----~~~~~v~~ 626 (1052)
..|+++.|.+..++.++..+ . .+.+.++||+||||||||++|+++++.+.... .....++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al---~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL---C------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH---h------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 34667888888877776432 1 12356899999999999999999998754221 11256788
Q ss_pred EecccccCCchhhHHHHhh----------hhHH----------HhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHH
Q 001560 627 VCCSRLSLEKGPIIRQALS----------NFIS----------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (1052)
Q Consensus 627 v~~s~L~~~~~~~~~~~l~----------~~f~----------~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l 686 (1052)
++|........+-....+. ..+. .......++|||||+|.|-+ .....+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-----------~~q~~L 195 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-----------VQMNKL 195 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-----------HHHHHH
Confidence 8886421100000000000 0000 01122357999999999832 222333
Q ss_pred HHHHHHHHHH-----hccccCC----------ccCcCc-EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHH
Q 001560 687 TKFLVDIMDE-----YGEKRKS----------SCGIGP-IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAIL 750 (1052)
Q Consensus 687 ~~~L~~~ld~-----~~~~~~~----------~~~~~~-V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL 750 (1052)
+..|.+..-. +...... ...... .++++|++.++.+++++++ |+. .+.+++++.+++.+|+
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il 272 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIA 272 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHH
Confidence 3333221000 0000000 000112 3445667789999999998 875 7889999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccccc
Q 001560 751 EHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1052)
Q Consensus 751 ~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1052)
+..+++.++.++++.++.++..+. +++++.++++.|+..+..+ ....++.+|+..++.
T Consensus 273 ~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-----------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 273 KNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-----------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-----------CCcEEcHHHHHHHhC
Confidence 999999889999999998887664 7899999999988655433 124578888887765
No 105
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=5.6e-12 Score=150.61 Aligned_cols=194 Identities=18% Similarity=0.248 Sum_probs=137.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|.++.|.+.....+.+.+.. ...+..+||+||+|+|||++|+++|+.+.+....
T Consensus 13 tFddVIGQe~vv~~L~~aI~~--------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALER--------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 466788888777666664421 1223568999999999999999999998753211
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...++.++.++- .....++..+...-.........|+||||+|.|-. ...+.|+..
T Consensus 79 ~~I~~g~hpDviEIDAAs~--~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~NALLKt 141 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR--TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFNALLKT 141 (702)
T ss_pred HHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHHHHHHH
Confidence 113444444321 23444554444332222234457999999998831 234456666
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+|+.+..+++.+++ |+. .++|.+++.++..+.++..+.+.++.++++.+..++..+
T Consensus 142 LEEPP~---------~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 142 LEEPPE---------HVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HhcCCC---------CcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 36777788888888888887 765 789999999999999999999989999999999999998
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +.+++.+++++++
T Consensus 210 ~G-dLRdALnLLDQaI 224 (702)
T PRK14960 210 QG-SLRDALSLTDQAI 224 (702)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 7888888887765
No 106
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=3.2e-12 Score=152.15 Aligned_cols=195 Identities=18% Similarity=0.289 Sum_probs=131.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
.+++||||+|+|||+|++++++++..... ...+.++++.++.......+.....+.|.... ..+++|+|||+|.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC
Confidence 45999999999999999999999864321 15678889887754443333321122232222 35789999999998531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCC---CchhhhcCCCcc--eeeeCCCCCHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~r~gRF~--~~i~i~~Pd~~e 745 (1052)
. .....+...+ +.....+ ..++|++...+.. +++.+.+ ||. ..+.+++|+.++
T Consensus 227 ~---------~~~~~l~~~~----n~l~~~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 227 E---------RTQEEFFHTF----NALHEAG-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLET 284 (450)
T ss_pred H---------HHHHHHHHHH----HHHHHCC-------CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHH
Confidence 0 1112333333 3332221 2355555555554 6688888 785 579999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccccccc
Q 001560 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1052)
Q Consensus 746 R~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1052)
|.+|++..+...++.++++++..||....| +.++|..++.+....+... ...++.+.+.+++..
T Consensus 285 r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~------------~~~it~~~~~~~l~~ 348 (450)
T PRK00149 285 RIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT------------GKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHH
Confidence 999999999988899999999999999887 7888888888775443222 123666666666554
No 107
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.2e-12 Score=150.84 Aligned_cols=190 Identities=23% Similarity=0.331 Sum_probs=129.0
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc-
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS- 633 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~- 633 (1052)
+-.|++.+++.|++.+....... -..+.-++|+||||+|||+|++.+|+.++ ..++.++...+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~---------~~kGpILcLVGPPGVGKTSLgkSIA~al~------RkfvR~sLGGvrD 388 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK---------KLKGPILCLVGPPGVGKTSLGKSIAKALG------RKFVRISLGGVRD 388 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc---------cCCCcEEEEECCCCCCchhHHHHHHHHhC------CCEEEEecCcccc
Confidence 44678888888888885432211 11223489999999999999999999998 566666654332
Q ss_pred --------CCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHH-----HHHHhccc
Q 001560 634 --------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD-----IMDEYGEK 700 (1052)
Q Consensus 634 --------~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~-----~ld~~~~~ 700 (1052)
..|.|.+-.++-+.+..|...+| +++|||+|.+.. +-.|. ++ ..+++.|.- +.|.|-.-
T Consensus 389 EAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~s---s~rGD-Pa---SALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 389 EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGS---SFRGD-PA---SALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred HHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccC---CCCCC-hH---HHHHhhcCHhhcCchhhccccC
Confidence 23556665666666666765665 888999999963 22221 11 134444321 22222211
Q ss_pred cCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHh-----hc-----cCCCCHHHHHHHh
Q 001560 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RR-----SLECSDEILLDVA 770 (1052)
Q Consensus 701 ~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~-----~~-----~~~~sd~~l~~La 770 (1052)
......|++|+|+|+.+.+|.+|+. |+. +|++.-++.+|..+|.+.++- .+ .+.++++.+..+.
T Consensus 461 ---~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 461 ---PYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred ---ccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 1122369999999999999999999 998 899999999999999987753 23 3457888888776
Q ss_pred hhc
Q 001560 771 SKC 773 (1052)
Q Consensus 771 ~~t 773 (1052)
+..
T Consensus 535 ~~Y 537 (782)
T COG0466 535 RYY 537 (782)
T ss_pred HHH
Confidence 653
No 108
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=9.3e-12 Score=152.73 Aligned_cols=194 Identities=21% Similarity=0.254 Sum_probs=136.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~---------- 621 (1052)
.|.++.|.+..+..+++.+.. . ..+..+||+||||||||++||++|+.+.+.....
T Consensus 14 tFddIIGQe~Iv~~LknaI~~----~----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQ----Q----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHh----C----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 456777888777766654421 1 1234479999999999999999999997642100
Q ss_pred --------eeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 622 --------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 622 --------~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
..++.++... ......++..+..+..........|+||||+|.|-. ...+.|+..
T Consensus 80 ~~i~~g~~~DviEidAas--~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---------------eAqNALLKt 142 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS--RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---------------SSFNALLKT 142 (944)
T ss_pred HHHhcCCCceEEEecccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------HHHHHHHHH
Confidence 1122233221 122344555444433222233456999999999831 345667777
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|++|+.+..|.+.+++ |.. .++|++++.++..+.|++.+...++.++++.+..|+..+
T Consensus 143 LEEPP~---------~vrFILaTTe~~kLl~TIlS--RCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S 210 (944)
T PRK14949 143 LEEPPE---------HVKFLLATTDPQKLPVTVLS--RCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA 210 (944)
T ss_pred HhccCC---------CeEEEEECCCchhchHHHHH--hhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776543 47777788888889988888 653 799999999999999999888878889999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +++++..++++++
T Consensus 211 ~G-d~R~ALnLLdQal 225 (944)
T PRK14949 211 NG-SMRDALSLTDQAI 225 (944)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 88 6788888887766
No 109
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.40 E-value=8.2e-12 Score=150.44 Aligned_cols=223 Identities=15% Similarity=0.191 Sum_probs=139.1
Q ss_pred cccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccC----ccceeeEEEEec
Q 001560 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH----KDLVAHIVFVCC 629 (1052)
Q Consensus 554 ~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~----~~~~~~v~~v~~ 629 (1052)
..|+|.+..++.+...|...+.. ..++..++|+|+||||||++++.+++++... ......+++++|
T Consensus 755 D~LPhREeEIeeLasfL~paIkg----------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ----------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc----------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 47888999999988888655431 1222335699999999999999999988522 111256789999
Q ss_pred ccccCCch-----------------hhHHHHhhhhHHHhh--ccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHH
Q 001560 630 SRLSLEKG-----------------PIIRQALSNFISEAL--DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1052)
Q Consensus 630 s~L~~~~~-----------------~~~~~~l~~~f~~a~--~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L 690 (1052)
..+..... ......+..+|.... .....||+|||+|.|... . ..+ |
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---~---------QDV---L 889 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---T---------QKV---L 889 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---H---------HHH---H
Confidence 66443211 012234455555442 233569999999999631 0 122 3
Q ss_pred HHHHHHhccccCCccCcCcEEEEEecCC---CCCCchhhhcCCCcce-eeeCCCCCHHHHHHHHHHHHhhccCCCCHHHH
Q 001560 691 VDIMDEYGEKRKSSCGIGPIAFVASAQS---LEKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQRRSLECSDEIL 766 (1052)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~V~vIattn~---~~~Ld~aL~r~gRF~~-~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l 766 (1052)
..+++...... ..+.+||++|. ++.+++.+++ ||.. .+.|++++.+++.+||+..+......++++++
T Consensus 890 YnLFR~~~~s~------SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAI 961 (1164)
T PTZ00112 890 FTLFDWPTKIN------SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAI 961 (1164)
T ss_pred HHHHHHhhccC------CeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 33333222111 14889999987 3456677777 5553 48899999999999999988764445788999
Q ss_pred HHHhhhcCCC--CHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccccccc
Q 001560 767 LDVASKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 767 ~~La~~teG~--s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
..+|+..... .++..-.+|++|+.. + +...++.+++.+|+...
T Consensus 962 ELIArkVAq~SGDARKALDILRrAgEi---k-----------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 962 QLCARKVANVSGDIRKALQICRKAFEN---K-----------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHhh---c-----------CCCccCHHHHHHHHHHH
Confidence 8888744322 233333444444421 0 11246777777776543
No 110
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=5.6e-12 Score=148.93 Aligned_cols=276 Identities=13% Similarity=0.180 Sum_probs=165.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
.+++||||+|+|||+|++++|+++..... ...+.+++++++...........-..-|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 35999999999999999999998753221 14678888877654433322211112233333346889999999988531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCC---chhhhcCCCcc--eeeeCCCCCHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRFD--FHVQLPAPAASE 745 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L---d~aL~r~gRF~--~~i~i~~Pd~~e 745 (1052)
......+...+.. +...+ ..+++++...+..+ .+.+.+ ||. ..+.+++|+.+.
T Consensus 210 ---------~~~q~elf~~~n~----l~~~~-------k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 210 ---------TGVQTELFHTFNE----LHDSG-------KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEET 267 (440)
T ss_pred ---------HHHHHHHHHHHHH----HHHcC-------CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHH
Confidence 0111233333333 22211 24555555666554 466777 664 568999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccccccccc
Q 001560 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1052)
Q Consensus 746 R~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1052)
|.+|++..++..++.++++++..||....| +.++|+.++.+....+... ...++.+...++++.+..
T Consensus 268 r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~------------~~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 268 RKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT------------GEEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHHHhc
Confidence 999999999888899999999999999887 7788888887765433222 123555555555544311
Q ss_pred cccccccccccCCCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe
Q 001560 826 VAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1052)
Q Consensus 826 ~~lr~v~~~~~~~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~ 905 (1052)
.. .-......+.+.+.+.+.... ... =|.|++-+.+-..||.+|-.+...
T Consensus 335 ~~--------------~~~~~i~~~~I~~~V~~~~~i--~~~--------------~l~s~~R~~~i~~aR~iamyl~r~ 384 (440)
T PRK14088 335 PN--------------RVKAMDPIDELIEIVAKVTGV--SRE--------------EILSNSRNVKALLARRIGMYVAKN 384 (440)
T ss_pred cc--------------cccCCCCHHHHHHHHHHHcCC--cHH--------------HHhCCCCCccccHHHHHHHHHHHH
Confidence 00 000123345556666554431 111 123455555667788777666544
Q ss_pred EEEeechhhhhhhhcccHHHHHHHHHHH
Q 001560 906 FISVKGPELLNKYIGASEQAVRDIFSKA 933 (1052)
Q Consensus 906 ~i~v~~s~l~~~yvGese~~ir~lf~~A 933 (1052)
....+.+++ ++.+|.+-..|-...++.
T Consensus 385 ~~~~s~~~I-g~~fgr~hstV~~a~~~i 411 (440)
T PRK14088 385 YLGSSLRTI-AEKFNRSHPVVVDSVKKV 411 (440)
T ss_pred HhCCCHHHH-HHHhCCCHHHHHHHHHHH
Confidence 444455443 344465554444444443
No 111
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=1.5e-11 Score=142.66 Aligned_cols=226 Identities=18% Similarity=0.233 Sum_probs=141.5
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCc---cceeeEEEEeccc
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSR 631 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~---~~~~~v~~v~~s~ 631 (1052)
.+.|.+..++++...+...+.. ..+.+++|+||||||||++++++++.+.... .....+++++|..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~-----------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRG-----------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcC-----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 6788999999998888654421 2245699999999999999999999875221 1114678899876
Q ss_pred ccCCc--hh------------------hHHHHhhhhHHHhh-ccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHH
Q 001560 632 LSLEK--GP------------------IIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1052)
Q Consensus 632 L~~~~--~~------------------~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L 690 (1052)
..... .. ...+.+..++.... ...+.||+|||+|.+.+. . . .++..|
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---~-----~----~~L~~l 152 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---D-----D----DLLYQL 152 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---C-----c----HHHHhH
Confidence 44211 00 01122233333332 245679999999999621 0 0 223333
Q ss_pred HHHHHHhccccCCccCcCcEEEEEecCCCC---CCchhhhcCCCcc-eeeeCCCCCHHHHHHHHHHHHhh--ccCCCCHH
Q 001560 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDE 764 (1052)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~r~gRF~-~~i~i~~Pd~~eR~~IL~~~l~~--~~~~~sd~ 764 (1052)
.+..+..... ..++.+|+++|.++ .+++.+.+ ||. ..+.|++++.+++.+|++..++. ....++++
T Consensus 153 ~~~~~~~~~~------~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~ 224 (365)
T TIGR02928 153 SRARSNGDLD------NAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG 224 (365)
T ss_pred hccccccCCC------CCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh
Confidence 3321111100 12588888888875 46777766 664 57999999999999999988763 22336677
Q ss_pred HHHHHhh---hcCCCCHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccccccc
Q 001560 765 ILLDVAS---KCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 765 ~l~~La~---~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
.+..++. .+.| .++.+..+|++|...+..+ ....++.+++.+|+...
T Consensus 225 ~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~-----------~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 225 VIPLCAALAAQEHG-DARKAIDLLRVAGEIAERE-----------GAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 6655544 4455 4555566777777655443 22457888888776654
No 112
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.39 E-value=6.6e-13 Score=147.86 Aligned_cols=122 Identities=21% Similarity=0.337 Sum_probs=98.9
Q ss_pred CCCccccccchhHH---HHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhh
Q 001560 840 RSGWDDVGGLTDIQ---NAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk---~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~ 916 (1052)
+..+++++|++++. ..|+++++. ..-.+++||||||||||++|++||...+.+|..+++.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---- 82 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---- 82 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc----
Confidence 46788888888765 345555542 2235799999999999999999999999999999873
Q ss_pred hhhcccHHHHHHHHHHHhcC----CCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCc
Q 001560 917 KYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGV 988 (1052)
Q Consensus 917 ~yvGese~~ir~lf~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~ 988 (1052)
-.+-+.+|++|++|+.. ..-|||+|||+.+- ...+|-++-.+|++..++|.+++||+.++..
T Consensus 83 ---~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-------K~QQD~lLp~vE~G~iilIGATTENPsF~ln 148 (436)
T COG2256 83 ---TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-------KAQQDALLPHVENGTIILIGATTENPSFELN 148 (436)
T ss_pred ---cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-------hhhhhhhhhhhcCCeEEEEeccCCCCCeeec
Confidence 35567899999999543 24699999999993 4557889999999999999999999988774
No 113
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.3e-11 Score=146.21 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=126.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.+.++.|.+.....+.+ .+... ..+.++||+|||||||||+|+++|+.+.+....
T Consensus 12 ~~~divGq~~i~~~L~~----~i~~~----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 12 TFSEVVGQDHVKKLIIN----ALKKN----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CHHHccCcHHHHHHHHH----HHHcC----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 35567777665444433 22111 234558999999999999999999998743210
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...+..++++. ......+++....+-.........|+||||+|.+.. ...+.|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~--~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS--NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCcc--cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHHHHHHHH
Confidence 11344444432 122333333221111111123456999999999841 123445555
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
++.... .+++|++|+.+..+++++.+ |+. .+.+++++.++...+++..+...+..++++++..++..+
T Consensus 141 LE~p~~---------~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 141 LEEPPS---------HVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred HHhCCC---------cEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 555332 36677777777889999998 775 799999999999999999998888899999999999988
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +.+++.+.++.+.
T Consensus 209 ~G-dlR~aln~Le~l~ 223 (472)
T PRK14962 209 SG-GLRDALTMLEQVW 223 (472)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 5556656555543
No 114
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.2e-11 Score=145.89 Aligned_cols=195 Identities=17% Similarity=0.226 Sum_probs=139.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------ 619 (1052)
+|.++.|.+...+.+.+.+. . ...+.++||+||+|+||||+|+.+|+.+.+...
T Consensus 11 ~f~dliGQe~vv~~L~~a~~----~----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFT----L----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHH----c----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 46678888777665554331 1 123467999999999999999999998764321
Q ss_pred ------ceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 620 ------~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
....++.++.++- ...++++..+..+-.........|+||||+|.+-. .-.+.|+..
T Consensus 77 ~~i~~~~~~Dv~eidaas~--~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN--TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEecccC--CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHHHHHH
Confidence 1134566666532 23455555444432222234556999999998831 223456666
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+|+..+.+.+.+++ |+. .++|.+++.++..+.++..+++.+..++++.+..++..+
T Consensus 140 LEePp~---------~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 140 LEEPAP---------HVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS 207 (491)
T ss_pred HhCCCC---------CeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665433 36777777888889999888 665 689999999999999999999989999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (1052)
.| +.+++..++++++.
T Consensus 208 ~G-slR~alslLdqli~ 223 (491)
T PRK14964 208 SG-SMRNALFLLEQAAI 223 (491)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 77 78888888887653
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=1e-11 Score=148.58 Aligned_cols=176 Identities=18% Similarity=0.241 Sum_probs=120.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCC
Q 001560 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSS 671 (1052)
Q Consensus 592 ~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~ 671 (1052)
.++|||++|+|||+|++++|+++.... ....+.|+++.++.......+.....+.|.... ..+++|+|||++.+.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 499999999999999999999975321 115678999887765444433322222233222 356899999999885311
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCC---CCchhhhcCCCc--ceeeeCCCCCHHHH
Q 001560 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRF--DFHVQLPAPAASER 746 (1052)
Q Consensus 672 ~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~r~gRF--~~~i~i~~Pd~~eR 746 (1052)
.....+.+. ++.+...+ .-+||++...+. .+++.|.+ || ...+.|..|+.+.|
T Consensus 394 ---------~tqeeLF~l----~N~l~e~g-------k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 394 ---------STQEEFFHT----FNTLHNAN-------KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETR 451 (617)
T ss_pred ---------HHHHHHHHH----HHHHHhcC-------CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHH
Confidence 111233333 33333221 123443333333 56788988 66 56789999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 001560 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1052)
Q Consensus 747 ~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a 792 (1052)
.+||+..+..+++.++++++..|+.+..+ +.++|+.++.+....+
T Consensus 452 ~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 452 IAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876 6788888888765433
No 116
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.1e-11 Score=148.31 Aligned_cols=195 Identities=18% Similarity=0.222 Sum_probs=138.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|.++.|.+..++.+++.+.. ...+..+||+||+|+|||++|+.+|+.+.+....
T Consensus 14 ~f~divGq~~v~~~L~~~~~~--------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQ--------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHh--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 466788888888777765521 1123458999999999999999999999754211
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...+++++... ....++++..+..+-.........|+||||+|.+.. .-.+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas--~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~naLLk~ 142 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS--RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSFNALLKT 142 (509)
T ss_pred HHHhcCCCceEEEEcccc--cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHHHHHHHH
Confidence 11255555432 234445555444332222223456999999999841 224556666
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+|+.+..+++.+++ |.. .++|.+++.++..+.++..++..++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s 210 (509)
T PRK14958 143 LEEPPS---------HVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA 210 (509)
T ss_pred HhccCC---------CeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 666433 36677777888888888888 654 688999999999999999998888999999999999998
Q ss_pred CCCCHHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (1052)
.| +.+++.+++++++.
T Consensus 211 ~G-slR~al~lLdq~ia 226 (509)
T PRK14958 211 NG-SVRDALSLLDQSIA 226 (509)
T ss_pred CC-cHHHHHHHHHHHHh
Confidence 77 78888888887753
No 117
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.6e-11 Score=148.88 Aligned_cols=194 Identities=20% Similarity=0.272 Sum_probs=138.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~---------- 621 (1052)
.|.++.|.+..+..+.+.+.. . ..+..+||+||+|+||||+|+.+|+.+.+.....
T Consensus 14 ~f~divGQe~vv~~L~~~l~~----~----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDL----G----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 466788888877766654421 1 1234479999999999999999999998632110
Q ss_pred --------eeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 622 --------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 622 --------~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
..++.++... ....+.++..+..+..........|+||||+|.|-. .-.+.|+..
T Consensus 80 ~~i~~g~~~D~ieidaas--~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS--RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHHH
Confidence 1234444332 123455555554443333334556999999999831 335566677
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+|+.+..+.+.+++ |. ..++|++++.++..+.|+..+...++.++++.+..++..+
T Consensus 143 LEEPp~---------~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s 210 (647)
T PRK07994 143 LEEPPE---------HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAA 210 (647)
T ss_pred HHcCCC---------CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776543 47778788889999999998 74 5899999999999999999888878889999999999998
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +.++...++++++
T Consensus 211 ~G-s~R~Al~lldqai 225 (647)
T PRK07994 211 DG-SMRDALSLTDQAI 225 (647)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 88 6777777777665
No 118
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=2e-11 Score=145.12 Aligned_cols=195 Identities=22% Similarity=0.249 Sum_probs=135.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|.++.|.+..+..+.+.+.. ...+.++||+||+||||||+|+++|+.+.+....
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~--------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILN--------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 356777888777665553311 1224679999999999999999999999753210
Q ss_pred -----------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHH
Q 001560 621 -----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1052)
Q Consensus 621 -----------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~ 689 (1052)
...++.+++.. ....++++..+.............|+||||+|.+.. .-.+.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas--~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~na 147 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS--KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFNA 147 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC--CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHHH
Confidence 01334444322 223444444443332222223456999999998831 22344
Q ss_pred HHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHH
Q 001560 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1052)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~L 769 (1052)
|+..+++... .+.+|++|+..+.+++.+.+ |.. .+++++++.++..++++..+++.+..++++.+..+
T Consensus 148 LLk~LEepp~---------~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~I 215 (507)
T PRK06645 148 LLKTLEEPPP---------HIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRII 215 (507)
T ss_pred HHHHHhhcCC---------CEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555554322 46777777888889998888 664 78899999999999999999988999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHH
Q 001560 770 ASKCDGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 770 a~~teG~s~~DL~~Lv~~A~~ 790 (1052)
+..+.| +.+++.+++++++.
T Consensus 216 a~~s~G-slR~al~~Ldkai~ 235 (507)
T PRK06645 216 AYKSEG-SARDAVSILDQAAS 235 (507)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 999887 78888888888754
No 119
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.37 E-value=5.8e-12 Score=148.06 Aligned_cols=177 Identities=20% Similarity=0.320 Sum_probs=119.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
.+++||||+|+|||+|++++++++.... ....++++++.++...........-...|.... ..+++|+|||+|.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 4589999999999999999999986431 115678888877653332222211111122211 24679999999998531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCC---CchhhhcCCCcc--eeeeCCCCCHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~r~gRF~--~~i~i~~Pd~~e 745 (1052)
. .....+...+ +...... ..++|++...+.. +++.+.+ ||. ..+.+++|+.++
T Consensus 215 ~---------~~~~~l~~~~----n~~~~~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 215 E---------RTQEEFFHTF----NALHENG-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLET 272 (405)
T ss_pred H---------HHHHHHHHHH----HHHHHCC-------CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHH
Confidence 0 1112333333 3322221 2345555555544 5577877 775 479999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 001560 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1052)
Q Consensus 746 R~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a 792 (1052)
|.+|++..++..++.++++++..+|....+ +.++|+.++.+....+
T Consensus 273 r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 273 RLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 999999999998999999999999998877 7788888888776544
No 120
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.8e-11 Score=147.74 Aligned_cols=195 Identities=18% Similarity=0.219 Sum_probs=136.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|.++.|.+..+..+++.+.. ...+..+||+||+|+|||++|+.+|+.+.+....
T Consensus 14 tFddIIGQe~vv~~L~~ai~~--------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDE--------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 466788888887777665431 1224569999999999999999999998753211
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...++.++... ....+.++..+...-.........|+||||+|.+-. ...+.|++.
T Consensus 80 r~i~~g~~~DvlEidaAs--~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLKt 142 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS--NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLKT 142 (709)
T ss_pred HHHhccCccceEEEeccc--cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHHH
Confidence 01223343322 122334444333221111223456999999998731 223456666
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+|+.+..+.+.+++ |+. .|.|+.++.++..+.|+..+.+.++.++++.+..|++.+
T Consensus 143 LEEPp~---------~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 143 LEEPPE---------HVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred HHhCCC---------CcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 665432 36778888888889888887 764 688999999999999999999989999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (1052)
.| +.+++.+++++++.
T Consensus 211 ~G-slRdAlnLLDqaia 226 (709)
T PRK08691 211 AG-SMRDALSLLDQAIA 226 (709)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 77 78899888888764
No 121
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.2e-11 Score=137.88 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=102.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhc----cCCeEEEEeccch
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDS 666 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~ 666 (1052)
.+++|||||||||||+|+.+|+..+ ..|..++.-. ....+ ++++++++.. ....||||||+|.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~------~~f~~~sAv~---~gvkd----lr~i~e~a~~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTN------AAFEALSAVT---SGVKD----LREIIEEARKNRLLGRRTILFLDEIHR 115 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhC------CceEEecccc---ccHHH----HHHHHHHHHHHHhcCCceEEEEehhhh
Confidence 5699999999999999999999988 5666665433 22233 4555555532 3467999999999
Q ss_pred hccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecC-C-CCCCchhhhcCCCcceeeeCCCCCHH
Q 001560 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ-S-LEKIPQSLTSSGRFDFHVQLPAPAAS 744 (1052)
Q Consensus 667 L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn-~-~~~Ld~aL~r~gRF~~~i~i~~Pd~~ 744 (1052)
+-. . -.+.|+-.++. +.+++||+|+ + .-.++++|++ |-. ++.+.+.+.+
T Consensus 116 fnK----~-----------QQD~lLp~vE~-----------G~iilIGATTENPsF~ln~ALlS--R~~-vf~lk~L~~~ 166 (436)
T COG2256 116 FNK----A-----------QQDALLPHVEN-----------GTIILIGATTENPSFELNPALLS--RAR-VFELKPLSSE 166 (436)
T ss_pred cCh----h-----------hhhhhhhhhcC-----------CeEEEEeccCCCCCeeecHHHhh--hhh-eeeeecCCHH
Confidence 831 1 12344444443 2477787654 3 3478999999 544 7899999999
Q ss_pred HHHHHHHHHHh--hccCC-----CCHHHHHHHhhhcCCC
Q 001560 745 ERKAILEHEIQ--RRSLE-----CSDEILLDVASKCDGY 776 (1052)
Q Consensus 745 eR~~IL~~~l~--~~~~~-----~sd~~l~~La~~teG~ 776 (1052)
+..+++++.+. .+++. ++++.+..++..+.|-
T Consensus 167 di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 167 DIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred HHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 99999988443 34444 6788999999999883
No 122
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.7e-11 Score=140.15 Aligned_cols=194 Identities=18% Similarity=0.254 Sum_probs=128.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~---------- 621 (1052)
.+.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.+.....
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~--------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSL--------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 355777888777766654421 11234579999999999999999999986421110
Q ss_pred --------eeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 622 --------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 622 --------~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
..+..++... ......++..+..+..........|+||||+|.+-. ...+.|+..
T Consensus 80 ~~~~~~~~~d~~~~~~~~--~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk~ 142 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS--RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLKT 142 (363)
T ss_pred HHHhcCCCCceEEecccc--cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHHHH
Confidence 1122232221 112233333222211111122346999999998831 123345555
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+|+..+.+.+.+.+ |+. .+++++|+.++..++++..++..+..++++.+..++..+
T Consensus 143 lEe~~~---------~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s 210 (363)
T PRK14961 143 LEEPPQ---------HIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHA 210 (363)
T ss_pred HhcCCC---------CeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 655332 36677777878888888888 764 789999999999999999998888889999999999998
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +++++.++++.++
T Consensus 211 ~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 211 HG-SMRDALNLLEHAI 225 (363)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 7788877777765
No 123
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.35 E-value=2.8e-11 Score=141.79 Aligned_cols=226 Identities=20% Similarity=0.239 Sum_probs=143.6
Q ss_pred cccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 001560 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1052)
Q Consensus 554 ~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~ 633 (1052)
..+.|.+..++++...+...+.. ..+.+++|+||||||||++++.+++.+.... ....+++++|....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~-----------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~ 97 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG-----------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDR 97 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC-----------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCC
Confidence 35677888888888877554321 2235699999999999999999999885332 12567888886543
Q ss_pred CCc-----------------hh-hHHHHhhhhHHHhh-ccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHH
Q 001560 634 LEK-----------------GP-IIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1052)
Q Consensus 634 ~~~-----------------~~-~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~l 694 (1052)
... .+ .....+..+..... ...+.||+|||+|.+... .+ . ..+..|.+.+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~----~~---~----~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEK----EG---N----DVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhcc----CC---c----hHHHHHHHhh
Confidence 210 00 11222222222222 234679999999999611 10 0 2344444444
Q ss_pred HHhccccCCccCcCcEEEEEecCCCC---CCchhhhcCCCcc-eeeeCCCCCHHHHHHHHHHHHhhc--cCCCCHHHHHH
Q 001560 695 DEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRR--SLECSDEILLD 768 (1052)
Q Consensus 695 d~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~r~gRF~-~~i~i~~Pd~~eR~~IL~~~l~~~--~~~~sd~~l~~ 768 (1052)
+..... ++.+|++++..+ .+++.+.+ ||. ..+.+++++.++..+|++..++.. ...++++.++.
T Consensus 167 ~~~~~~--------~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 236 (394)
T PRK00411 167 EEYPGA--------RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDL 236 (394)
T ss_pred hccCCC--------eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHH
Confidence 433211 477888887654 46666666 553 578999999999999999887642 22477888888
Q ss_pred HhhhcCCC--CHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccccccc
Q 001560 769 VASKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 769 La~~teG~--s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
+++.+.+. ..+.+-.++.+|...+..+ ....++.+|+.+|+...
T Consensus 237 i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~-----------~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 237 IADLTAREHGDARVAIDLLRRAGLIAERE-----------GSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 88877432 3344556677776555443 22468889998888765
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.35 E-value=2.9e-12 Score=160.75 Aligned_cols=101 Identities=28% Similarity=0.383 Sum_probs=86.5
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc----------CCeEEEee
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~----------~~~~i~v~ 910 (1052)
..+++++|.++....+.+.+. .+...++||+||||||||++|+++|+.+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 467889999888777766554 2234689999999999999999999987 78899999
Q ss_pred chhhh--hhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCC
Q 001560 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1052)
Q Consensus 911 ~s~l~--~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~ 954 (1052)
++.++ .+|.|+.++.++++|+.+....++||||||+|.+.+.+.
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~ 291 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGA 291 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCC
Confidence 99988 589999999999999999877899999999999987653
No 125
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.34 E-value=2.7e-11 Score=130.73 Aligned_cols=166 Identities=20% Similarity=0.318 Sum_probs=112.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhcc
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1052)
+.+++|+||+|||||++|+++++++.... ..+++++|..+.... .+++... ..+.+|+|||+|.+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQAD--------PEVLEGL--EQADLVCLDDVEAIAG 104 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHHhH--------HHHHhhc--ccCCEEEEeChhhhcC
Confidence 46799999999999999999999875322 467889988876322 1222222 2346999999998842
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCc---hhhhcCCCc--ceeeeCCCCCHH
Q 001560 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRF--DFHVQLPAPAAS 744 (1052)
Q Consensus 670 ~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld---~aL~r~gRF--~~~i~i~~Pd~~ 744 (1052)
. ... .+.|...++...... ..++++++..+..++ +.+.+ |+ ...+.+++|+.+
T Consensus 105 ~---------~~~----~~~L~~~l~~~~~~~-------~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~ 162 (226)
T TIGR03420 105 Q---------PEW----QEALFHLYNRVREAG-------GRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDE 162 (226)
T ss_pred C---------hHH----HHHHHHHHHHHHHcC-------CeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHH
Confidence 0 011 122333333322211 133444443443332 56676 54 468999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 745 eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
++..+++.++.+.+..++++.+..|+..+.| +.+++..+++++...
T Consensus 163 e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~ 208 (226)
T TIGR03420 163 EKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRA 208 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHH
Confidence 9999999888878888999999999997555 899999998886643
No 126
>PLN03025 replication factor C subunit; Provisional
Probab=99.34 E-value=3.1e-11 Score=137.36 Aligned_cols=165 Identities=22% Similarity=0.272 Sum_probs=114.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhh---ccCCeEEEEeccchh
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL---DHAPSIVIFDNLDSI 667 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~---~~~PsIL~IDEiD~L 667 (1052)
.++||+||||||||++|+++|+++.... ....+..++.++..+ .+.++..++....... .....|++|||+|.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l 111 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRG--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM 111 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhccc-Cccceeeeccccccc--HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc
Confidence 3699999999999999999999984321 113455566655332 2334444433222111 124579999999998
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHH
Q 001560 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1052)
Q Consensus 668 ~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~ 747 (1052)
.. .-.+.|.+.++.+.. ...+|.+||....+.+.+++ |.. .++|++|+.++..
T Consensus 112 t~---------------~aq~aL~~~lE~~~~---------~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~ 164 (319)
T PLN03025 112 TS---------------GAQQALRRTMEIYSN---------TTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEIL 164 (319)
T ss_pred CH---------------HHHHHHHHHHhcccC---------CceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHH
Confidence 42 123445566665433 24577788888888888988 654 7899999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHH
Q 001560 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1052)
Q Consensus 748 ~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~ 786 (1052)
..++..+++.++.++++.+..++..+.| +.+.+.+.++
T Consensus 165 ~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 165 GRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9999999999999999999999998876 4455444444
No 127
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.33 E-value=2.3e-11 Score=132.36 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=112.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
.+++|+||+|||||+|++++++++.... ..+.+++........ .+.++... ...+|+|||++.+.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~---~~v~y~~~~~~~~~~--------~~~~~~~~--~~dlliiDdi~~~~~~ 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRG---RAVGYVPLDKRAWFV--------PEVLEGME--QLSLVCIDNIECIAGD 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEHHHHhhhh--------HHHHHHhh--hCCEEEEeChhhhcCC
Confidence 4699999999999999999999876432 345566655432111 11111111 1258999999988421
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCC---CchhhhcCCCcc--eeeeCCCCCHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~r~gRF~--~~i~i~~Pd~~e 745 (1052)
......+...+...++. +. ..+++++.+.+.. +.+.|++ |+. ..+.+++|+.++
T Consensus 113 ---------~~~~~~lf~l~n~~~e~----g~------~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 113 ---------ELWEMAIFDLYNRILES----GR------TRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEE 171 (235)
T ss_pred ---------HHHHHHHHHHHHHHHHc----CC------CeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHH
Confidence 11222344444444331 10 1344455555555 5688998 764 689999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 746 R~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
|.++++.....+++.++++++..|+.+.+| +.+.+..++++..+.
T Consensus 172 ~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~ 216 (235)
T PRK08084 172 KLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRA 216 (235)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 999999988888899999999999999988 677888888775433
No 128
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=6e-11 Score=141.76 Aligned_cols=194 Identities=19% Similarity=0.261 Sum_probs=131.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------ 619 (1052)
.+.++.|.+..++.+.+.+.. . ..+..+||+|||||||||+|+++|+.+.+...
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~----~----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQ----G----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 355677887776666554421 1 12334699999999999999999999864211
Q ss_pred -----ceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHH
Q 001560 620 -----LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1052)
Q Consensus 620 -----~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~l 694 (1052)
....+..+++.. ......++.....+-.......+.|+||||+|.+.. ...+.|+..+
T Consensus 78 ~i~~~~h~dv~el~~~~--~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~---------------~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS--NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK---------------SAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEecccc--cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH---------------HHHHHHHHHH
Confidence 112355555432 222333333222221111224567999999987621 2244455555
Q ss_pred HHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcC
Q 001560 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (1052)
Q Consensus 695 d~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~te 774 (1052)
+.... .+++|.+++.+..+.+.+.+ |+. .++|++|+.++..+.++..+.+.++.++++.+..++..+.
T Consensus 141 Eep~~---------~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 141 EEPPE---------HVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred HhCCC---------CEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 55332 36777778888889998888 655 7999999999999999999998899999999999999998
Q ss_pred CCCHHHHHHHHHHHH
Q 001560 775 GYDAYDLEILVDRTV 789 (1052)
Q Consensus 775 G~s~~DL~~Lv~~A~ 789 (1052)
| +.+++.+++++++
T Consensus 209 G-dlR~aln~Lekl~ 222 (504)
T PRK14963 209 G-AMRDAESLLERLL 222 (504)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6677777777654
No 129
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.1e-11 Score=140.60 Aligned_cols=211 Identities=21% Similarity=0.352 Sum_probs=132.4
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc----
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS---- 630 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s---- 630 (1052)
+-.|++.+++.|.+.|..-.-. +-..+.-+.|+||||+|||+++|.+|+.|+ ..|+.++..
T Consensus 412 DHYgm~dVKeRILEfiAV~kLr---------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALn------RkFfRfSvGG~tD 476 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLR---------GSVQGKILCFVGPPGVGKTSIAKSIARALN------RKFFRFSVGGMTD 476 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhc---------ccCCCcEEEEeCCCCCCcccHHHHHHHHhC------CceEEEecccccc
Confidence 4456777777777776432110 112234588999999999999999999998 445555433
Q ss_pred --ccc---CCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHH-----HHHHHhccc
Q 001560 631 --RLS---LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV-----DIMDEYGEK 700 (1052)
Q Consensus 631 --~L~---~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~-----~~ld~~~~~ 700 (1052)
++. ..|.|.+-.++-+.+..+.-..| +++|||+|++.. +..+. ++ ..+++.|. +++|.|-.
T Consensus 477 vAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~---g~qGD-Pa---sALLElLDPEQNanFlDHYLd- 547 (906)
T KOG2004|consen 477 VAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS---GHQGD-PA---SALLELLDPEQNANFLDHYLD- 547 (906)
T ss_pred HHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC---CCCCC-hH---HHHHHhcChhhccchhhhccc-
Confidence 222 24556666666666666655555 888999999962 11111 11 13444332 12233322
Q ss_pred cCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhc----------cCCCCHHHHHHHh
Q 001560 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR----------SLECSDEILLDVA 770 (1052)
Q Consensus 701 ~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~----------~~~~sd~~l~~La 770 (1052)
-......|++|+|+|..+.||++|+. |+. .|+++-+..+|..+|.+.++-.. .+.++++++..+.
T Consensus 548 --Vp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI 622 (906)
T KOG2004|consen 548 --VPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI 622 (906)
T ss_pred --cccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHH
Confidence 12223369999999999999999999 988 89999999999999999876421 2346666666554
Q ss_pred hh-cCCCCH----HHHHHHHHHHHHHHHh
Q 001560 771 SK-CDGYDA----YDLEILVDRTVHAAVG 794 (1052)
Q Consensus 771 ~~-teG~s~----~DL~~Lv~~A~~~a~~ 794 (1052)
++ |.---- +.|+.+|+.++..-+.
T Consensus 623 ~~YcrEaGVRnLqk~iekI~Rk~Al~vv~ 651 (906)
T KOG2004|consen 623 ERYCREAGVRNLQKQIEKICRKVALKVVE 651 (906)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 43 321111 3355566665544333
No 130
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.30 E-value=5e-11 Score=149.18 Aligned_cols=212 Identities=18% Similarity=0.257 Sum_probs=135.1
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccC
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~ 634 (1052)
+..|++.+++.+++.+....... ...+..++|+||||+|||++++.+|+.++ ..+..+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~---------~~~g~~i~l~GppG~GKTtl~~~ia~~l~------~~~~~i~~~~~~d 387 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN---------KIKGPILCLVGPPGVGKTSLGQSIAKATG------RKYVRMALGGVRD 387 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc---------cCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEEcCCCCC
Confidence 36677777777777665332211 12334599999999999999999999987 4455555443221
Q ss_pred ---------CchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----
Q 001560 635 ---------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----- 700 (1052)
Q Consensus 635 ---------~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~----- 700 (1052)
.+.+.....+...+..+.... .|+||||+|.+.+. ..+ . ....|+..+|.-...
T Consensus 388 ~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~---~~g----~----~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 388 EAEIRGHRRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSD---MRG----D----PASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred HHHhccchhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccc---cCC----C----HHHHHHHHhccccEEEEecc
Confidence 122222222333344443233 48999999998531 111 1 123444544421100
Q ss_pred -cCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhh----------ccCCCCHHHHHHH
Q 001560 701 -RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----------RSLECSDEILLDV 769 (1052)
Q Consensus 701 -~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~----------~~~~~sd~~l~~L 769 (1052)
.........+++|+|+|+. .++++|++ ||. .+.++.++.++..+|.+.++.. ..+.++++.+..+
T Consensus 456 ~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~i 531 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGI 531 (784)
T ss_pred cccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHH
Confidence 0001223479999999988 59999999 996 7999999999999999887741 1245788888887
Q ss_pred hhh-cCCCCHHHHHHHHHHHHHHHHhhhc
Q 001560 770 ASK-CDGYDAYDLEILVDRTVHAAVGRYL 797 (1052)
Q Consensus 770 a~~-teG~s~~DL~~Lv~~A~~~a~~r~~ 797 (1052)
+.. +..+-.+.|+..+.+.+...+.+..
T Consensus 532 i~~yt~e~GaR~LeR~I~~i~r~~l~~~~ 560 (784)
T PRK10787 532 IRYYTREAGVRSLEREISKLCRKAVKQLL 560 (784)
T ss_pred HHhCCcccCCcHHHHHHHHHHHHHHHHHH
Confidence 753 4556678888888887777666643
No 131
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=7.7e-11 Score=142.91 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=134.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------ 619 (1052)
.|.++.|.+...+.+.+.+.. ...+..+||+||+|||||++|+.+|+.+.+...
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQ--------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 456788888877777665532 112345899999999999999999999874321
Q ss_pred ------ceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 620 ------~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
....++.++.+. ......++..+..+.........-|+||||+|.|.. .-.+.|+..
T Consensus 80 ~~i~~g~~~dv~eidaas--~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS--NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc--cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHH
Confidence 112344554432 223344444333322222223456999999998831 123445555
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+++|.+|+.++.+++.+++ |+. .+.|++|+.++..+.++..+++.++.++++.+..++..+
T Consensus 143 LEepp~---------~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 143 LEEPPA---------HVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred hcCCCC---------CeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 555332 36677677778899999888 665 688999999999999999999889999999999999988
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +.+++..+++++.
T Consensus 211 ~G-~~R~al~~Ldq~~ 225 (559)
T PRK05563 211 EG-GMRDALSILDQAI 225 (559)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 7888887777664
No 132
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=9.8e-11 Score=140.18 Aligned_cols=194 Identities=16% Similarity=0.255 Sum_probs=132.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+.+....
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~--------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALET--------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 455777888887776654421 1123448999999999999999999998752211
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...++.++... .....+++..+..+-.........|+||||+|.+-. .-.+.|+..
T Consensus 80 ~~i~~~~~~dlieidaas--~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS--RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeeccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHHHH
Confidence 01233333321 122334444443332222223456999999998831 234566676
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|++|+.+..+.+.+++ |. ..++|.+++.++..+.++..+.+.++.++++.+..++..+
T Consensus 143 LEepp~---------~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 143 LEEPPE---------YVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred HhcCCC---------CceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776433 36677777778888888887 66 3799999999999999999888888889999999999998
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +.+++.++++.++
T Consensus 211 ~G-dlR~alnlLek~i 225 (546)
T PRK14957 211 KG-SLRDALSLLDQAI 225 (546)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 7778777777665
No 133
>PRK04195 replication factor C large subunit; Provisional
Probab=99.29 E-value=6.3e-11 Score=142.18 Aligned_cols=180 Identities=18% Similarity=0.283 Sum_probs=123.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
.+.++.|.+..++.+.+.+..... ..++.++||+||||||||++|+++|++++ ..++.+++++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~-----------g~~~~~lLL~GppG~GKTtla~ala~el~------~~~ielnasd 74 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLK-----------GKPKKALLLYGPPGVGKTSLAHALANDYG------WEVIELNASD 74 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEEcccc
Confidence 456788888888887776644321 22357899999999999999999999987 5677888776
Q ss_pred ccCCchhhHHHHhhhhHHHhh-c-cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 632 LSLEKGPIIRQALSNFISEAL-D-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~-~-~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
.... ..+...+........ . ..+.+|+|||+|.+.+. . .. .....|.+.++.. .
T Consensus 75 ~r~~--~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~----~---d~----~~~~aL~~~l~~~-----------~ 130 (482)
T PRK04195 75 QRTA--DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN----E---DR----GGARAILELIKKA-----------K 130 (482)
T ss_pred cccH--HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc----c---ch----hHHHHHHHHHHcC-----------C
Confidence 4421 222222222211111 1 25679999999998531 0 00 1223344444421 1
Q ss_pred EEEEEecCCCCCCch-hhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCC
Q 001560 710 IAFVASAQSLEKIPQ-SLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1052)
Q Consensus 710 V~vIattn~~~~Ld~-aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG 775 (1052)
..+|.++|.+..+.. .+++ | ...+.|++|+.+++..+++..+...++.++++.+..|+..+.|
T Consensus 131 ~~iIli~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred CCEEEeccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 346667788777776 5554 4 4579999999999999999999988999999999999998876
No 134
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.29 E-value=1.2e-10 Score=132.52 Aligned_cols=175 Identities=21% Similarity=0.328 Sum_probs=118.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
.+.++.|.+...+.+...+. . ...+..+||+||||+|||++++++|++++ ..+.+++++.
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~----~----------~~~~~~lll~G~~G~GKT~la~~l~~~~~------~~~~~i~~~~ 78 (316)
T PHA02544 19 TIDECILPAADKETFKSIVK----K----------GRIPNMLLHSPSPGTGKTTVAKALCNEVG------AEVLFVNGSD 78 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHh----c----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC------ccceEeccCc
Confidence 45667777777666655442 1 12245577799999999999999999876 5677888877
Q ss_pred ccCCchhhHHHHhhhhHHHhhc-cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcE
Q 001560 632 LSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1052)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1052)
+. ...++..+.+....... ..+.+|+|||+|.+.. . .....|...++.... .+
T Consensus 79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~----~~~~~L~~~le~~~~---------~~ 132 (316)
T PHA02544 79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------A----DAQRHLRSFMEAYSK---------NC 132 (316)
T ss_pred --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------H----HHHHHHHHHHHhcCC---------Cc
Confidence 22 33444434433332211 3568999999998721 0 122344455555432 36
Q ss_pred EEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHh-------hccCCCCHHHHHHHhhhcCC
Q 001560 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-------RRSLECSDEILLDVASKCDG 775 (1052)
Q Consensus 711 ~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~-------~~~~~~sd~~l~~La~~teG 775 (1052)
.+|.++|....+++.+++ ||. .+.++.|+.+++.++++.++. ..+..++++.+..++....|
T Consensus 133 ~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 133 SFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred eEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 788899998999999998 886 789999999999888765433 34667888888888877665
No 135
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.1e-10 Score=140.93 Aligned_cols=194 Identities=18% Similarity=0.192 Sum_probs=135.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------ 619 (1052)
.|+++.|.+..++.+++.+.. ...+..+||+||+||||||+|+++|+.+.+...
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~--------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDA--------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 456777887777766665421 112234799999999999999999999875321
Q ss_pred --------ceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHH
Q 001560 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1052)
Q Consensus 620 --------~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~ 691 (1052)
....++.++.+.. ...+.++.....+.........-|+||||+|.+-. .-.+.|+
T Consensus 77 ~~i~~~~~~~~dvieidaas~--~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH--GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEeccccc--cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHH
Confidence 1123445554332 23455555444433322223456999999999831 2345566
Q ss_pred HHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhh
Q 001560 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1052)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~ 771 (1052)
..+++... .+++|.+|+.++.+.+.+++ |. .+++|..++.++..+.++.++++.+..++++.+..++.
T Consensus 140 K~LEEpp~---------~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 140 KIVEEPPE---------HLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHhcCCC---------CeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66666443 47777777888899999988 64 47999999999999999999998888899999999988
Q ss_pred hcCCCCHHHHHHHHHHHH
Q 001560 772 KCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 772 ~teG~s~~DL~~Lv~~A~ 789 (1052)
...| +.+++.++++.++
T Consensus 208 ~s~G-dlR~aln~Ldql~ 224 (584)
T PRK14952 208 AGGG-SPRDTLSVLDQLL 224 (584)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8776 7778878777754
No 136
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=1e-10 Score=140.03 Aligned_cols=193 Identities=20% Similarity=0.244 Sum_probs=132.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~---------- 621 (1052)
.|.++.|.+..++.+.+.+.. ...+.++||+||+|+|||++|+++|+.+.+.....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~--------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILN--------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 355777887777666554421 12235699999999999999999999987432110
Q ss_pred --------eeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 622 --------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 622 --------~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
..++.+++.. ....+.++..+..+-.........|++|||+|.+-. .-.+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas--~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS--NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEecccc--ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHHH
Confidence 1233344322 123344444433322222223346999999998831 123456666
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+++|.+|+.+..+.+.+++ |+. .++|++++.++....++..+.+.+..++++.+..++..+
T Consensus 143 LEEPp~---------~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS 210 (605)
T PRK05896 143 LEEPPK---------HVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLA 210 (605)
T ss_pred HHhCCC---------cEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 666433 36777777888899999888 765 789999999999999999998888889999999999998
Q ss_pred CCCCHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRT 788 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A 788 (1052)
.| +.+++..+++.+
T Consensus 211 ~G-dlR~AlnlLekL 224 (605)
T PRK05896 211 DG-SLRDGLSILDQL 224 (605)
T ss_pred CC-cHHHHHHHHHHH
Confidence 87 677777777664
No 137
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.29 E-value=1.2e-10 Score=124.11 Aligned_cols=195 Identities=22% Similarity=0.293 Sum_probs=136.7
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s 630 (1052)
..+++|.|++.+++.+++....++. ..+..++||+|++|||||++++++..++.... ..++.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~-----------G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~ 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ-----------GLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKE 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc-----------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHH
Confidence 4466889999999999998877764 34567899999999999999999999987543 345666655
Q ss_pred cccCCchhhHHHHhhhhHHHhh-ccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 631 RLSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
++.. +.+++.... ...+-|||+||+. |. ++. .-...|...+++-.... ..+
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe-----~~d-------~~yk~LKs~LeGgle~~-----P~N 141 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLS--FE-----EGD-------TEYKALKSVLEGGLEAR-----PDN 141 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCC--CC-----CCc-------HHHHHHHHHhcCccccC-----CCc
Confidence 5442 233333333 2356799999974 21 111 22355667777643322 237
Q ss_pred EEEEEecCCCCCCchhhhc---------------------CCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHH-
Q 001560 710 IAFVASAQSLEKIPQSLTS---------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL- 767 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r---------------------~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~- 767 (1052)
|++.+|+|+.+.+++.+.. +.||...+.|.+|+.++-.+|++.++++.++.++.+.+.
T Consensus 142 vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~ 221 (249)
T PF05673_consen 142 VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQ 221 (249)
T ss_pred EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999986655432221 139999999999999999999999999999998876543
Q ss_pred ---HHhhhcCCCCHHHHHHHHHH
Q 001560 768 ---DVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 768 ---~La~~teG~s~~DL~~Lv~~ 787 (1052)
..|....|.+|+-.+.+++.
T Consensus 222 ~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 222 EALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 34455577888766665543
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=3.5e-11 Score=141.93 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=127.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
.+++||||+|+|||+|++++++++.... ..+.++++..+.......+...-.+.|.... ....+|+|||++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC
Confidence 4699999999999999999999885332 5677888766543322222211111233322 35679999999988521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCC---CCchhhhcCCCcc--eeeeCCCCCHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAASE 745 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~r~gRF~--~~i~i~~Pd~~e 745 (1052)
. .....+...+....+. . ..+++++...+. .+++.+.+ ||. ..+.+++|+.++
T Consensus 218 ~---------~~qeelf~l~N~l~~~----~-------k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 218 G---------ATQEEFFHTFNSLHTE----G-------KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEG 275 (445)
T ss_pred h---------hhHHHHHHHHHHHHHC----C-------CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHH
Confidence 0 1122333333333221 1 234554444444 46688888 885 789999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH-HHhhhcccCCcccccccccccccccccccccc
Q 001560 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA-AVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 746 R~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~-a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
|.+|++..++..++.++++++..++....+ +.+.|...+.+.+.. +..+. ....++.++..+++..+
T Consensus 276 r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~----------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 276 LRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL----------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh----------hCCCCCHHHHHHHHHHh
Confidence 999999999998999999999999998776 567777777766432 22222 11346666766666543
No 139
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=9.1e-11 Score=146.70 Aligned_cols=194 Identities=16% Similarity=0.174 Sum_probs=136.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------ 619 (1052)
.|.++.|.+..++.+++.+.. . ..+..+||+||+|||||++|+.+|+.|.+...
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~----~----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDS----G----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHh----C----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 456777887777666554421 1 12234899999999999999999999975321
Q ss_pred --------ceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHH
Q 001560 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1052)
Q Consensus 620 --------~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~ 691 (1052)
....++.++... ....++++.....++.........|+||||+|.|-. .-.+.|+
T Consensus 79 ~~~~~g~~~~~dv~eidaas--~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLL 141 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAAS--HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALL 141 (824)
T ss_pred HHHHcCCCCCCcEEEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHHH
Confidence 012244444322 123455555444444333334567999999999841 3345666
Q ss_pred HHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhh
Q 001560 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1052)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~ 771 (1052)
+.+++... .+++|++|+..+.|.+.+++ |.. ++.|..++.++..++|+.+++..++.++++.+..+++
T Consensus 142 K~LEEpP~---------~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 142 KIVEEPPE---------HLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred HHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77776543 36777777888888888888 654 7899999999999999999988888899999999998
Q ss_pred hcCCCCHHHHHHHHHHHH
Q 001560 772 KCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 772 ~teG~s~~DL~~Lv~~A~ 789 (1052)
...| +.+++..++++.+
T Consensus 210 ~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 210 AGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8877 7777777777755
No 140
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=8.1e-11 Score=142.57 Aligned_cols=195 Identities=17% Similarity=0.220 Sum_probs=132.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------ 619 (1052)
.|+++.|.+..++.+.+.+.. . ..+..+||+||+|+|||++|+.+|+.+.+...
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~----~----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQ----Q----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHc----C----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 456777877776666554421 1 12344799999999999999999999875310
Q ss_pred -----------ceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHH
Q 001560 620 -----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1052)
Q Consensus 620 -----------~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~ 688 (1052)
....++.++... ....+.++..+..+..........|+||||+|.|.. .-.+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas--~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS--NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc--ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHHH
Confidence 001233333322 123344444443322222222345999999999842 2234
Q ss_pred HHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHH
Q 001560 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1052)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~ 768 (1052)
.|+..+++... .+.+|.+|+.+..+.+.+++ |. ..++|+.++.++..+.++..+.+.++.++++.+..
T Consensus 143 aLLKtLEEPP~---------~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~ 210 (618)
T PRK14951 143 AMLKTLEEPPE---------YLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRL 210 (618)
T ss_pred HHHHhcccCCC---------CeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45565655332 36777777888888888888 65 47999999999999999999998899999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHH
Q 001560 769 VASKCDGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 769 La~~teG~s~~DL~~Lv~~A~~ 790 (1052)
|+..+.| +.+++.+++++++.
T Consensus 211 La~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 211 LARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9999988 78888888877653
No 141
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.28 E-value=1.2e-10 Score=133.51 Aligned_cols=167 Identities=20% Similarity=0.307 Sum_probs=110.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchh--------------------hHHHHhhhhHHH
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP--------------------IIRQALSNFISE 650 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~--------------------~~~~~l~~~f~~ 650 (1052)
.++||+||||||||++|+++++++.... ....+.+++|.++...... .....++.+...
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKE 115 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHH
Confidence 3699999999999999999999986432 1134667787665321100 011223333322
Q ss_pred hhc-----cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchh
Q 001560 651 ALD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQS 725 (1052)
Q Consensus 651 a~~-----~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~a 725 (1052)
... ..+.+|+|||+|.+.. ...+.|...++.... ...+|.+++.+..+.+.
T Consensus 116 ~~~~~~~~~~~~vlilDe~~~l~~---------------~~~~~L~~~le~~~~---------~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 116 YASYRPLSADYKTILLDNAEALRE---------------DAQQALRRIMEQYSR---------TCRFIIATRQPSKLIPP 171 (337)
T ss_pred HHhcCCCCCCCcEEEEeCcccCCH---------------HHHHHHHHHHHhccC---------CCeEEEEeCChhhCchh
Confidence 221 2346999999998731 123345555554432 13455566566667777
Q ss_pred hhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHH
Q 001560 726 LTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1052)
Q Consensus 726 L~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~ 786 (1052)
+.+ |+ ..+.+++|+.+++.++++..+.+.+..++++.+..++..+.| +.+++...++
T Consensus 172 L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-dlr~l~~~l~ 228 (337)
T PRK12402 172 IRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-DLRKAILTLQ 228 (337)
T ss_pred hcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 777 65 378999999999999999999988999999999999998855 4554444443
No 142
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.28 E-value=8.2e-11 Score=138.52 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=110.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
.+++|+||||||||++|+++|+.+. ..+..+++... ....++..+.............+|||||+|.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~------~~~~~l~a~~~---~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~- 106 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATD------APFEALSAVTS---GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK- 106 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecccc---cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-
Confidence 4799999999999999999999876 45666666532 2233333333332222233668999999998741
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecC--CCCCCchhhhcCCCcceeeeCCCCCHHHHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ--SLEKIPQSLTSSGRFDFHVQLPAPAASERKA 748 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn--~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~ 748 (1052)
...+.|...++. +.+++|++++ ....+++++++ |+ ..+.+++++.++..+
T Consensus 107 --------------~~q~~LL~~le~-----------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 107 --------------AQQDALLPHVED-----------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQ 158 (413)
T ss_pred --------------HHHHHHHHHhhc-----------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHH
Confidence 122334444442 1366666543 34578899998 77 479999999999999
Q ss_pred HHHHHHhhc--cC-CCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 749 ILEHEIQRR--SL-ECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 749 IL~~~l~~~--~~-~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+++..+... +. .++++.+..+++.+.| +++.+.++++.+.
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 999877642 33 7888899999998866 6666666666654
No 143
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.28 E-value=1.7e-10 Score=134.37 Aligned_cols=199 Identities=21% Similarity=0.238 Sum_probs=126.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccC-Cchhh-HHHHhhhhHHHh----hccCCeEEEEe
Q 001560 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-EKGPI-IRQALSNFISEA----LDHAPSIVIFD 662 (1052)
Q Consensus 589 ~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~-~~~~~-~~~~l~~~f~~a----~~~~PsIL~ID 662 (1052)
+.+++||+||||||||++|+++|+.++ .+++.+++..+.. .+.+. ....+..++..+ ....++|||||
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~------~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iD 180 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILD------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYID 180 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC------CCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEe
Confidence 456799999999999999999999987 6777888877652 23332 344444444322 23467899999
Q ss_pred ccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccCCccCcCcEEEEEecCCCC------------------
Q 001560 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSLE------------------ 720 (1052)
Q Consensus 663 EiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~V~vIattn~~~------------------ 720 (1052)
|+|.+...+...... .......+.+.|+..|++... .........+.++|.|+|-.-
T Consensus 181 EIdkl~~~~~~~~~~-~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~ 259 (412)
T PRK05342 181 EIDKIARKSENPSIT-RDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLG 259 (412)
T ss_pred chhhhccccCCCCcC-CCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHh
Confidence 999997542111110 111112466777777775321 011111112334444433300
Q ss_pred ----------------------------------CCchhhhcCCCcceeeeCCCCCHHHHHHHHHH----HHh-------
Q 001560 721 ----------------------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEH----EIQ------- 755 (1052)
Q Consensus 721 ----------------------------------~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~----~l~------- 755 (1052)
.+.|.|. ||++..+.|.+.+.+++.+|+.. .++
T Consensus 260 ~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~ 337 (412)
T PRK05342 260 KKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFE 337 (412)
T ss_pred hcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123333 49999999999999999999972 222
Q ss_pred hc--cCCCCHHHHHHHhhh--cCCCCHHHHHHHHHHHHHHHHhhh
Q 001560 756 RR--SLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (1052)
Q Consensus 756 ~~--~~~~sd~~l~~La~~--teG~s~~DL~~Lv~~A~~~a~~r~ 796 (1052)
.. .+.++++++..|++. ..++-++.|+.++++.+...+.+.
T Consensus 338 ~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 338 MDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred hCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 22 345889999999986 467778899999998887776654
No 144
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.28 E-value=7.5e-12 Score=157.87 Aligned_cols=101 Identities=27% Similarity=0.394 Sum_probs=80.8
Q ss_pred cccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh--------
Q 001560 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------- 915 (1052)
Q Consensus 844 ~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~-------- 915 (1052)
+++.|++++++.+.+++...... +...+..+||+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999999877643111 111234699999999999999999999999999998765432
Q ss_pred -hhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 916 -NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 916 -~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
..|+|.....+.+.|..|....| |+||||||++.+.
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~ 429 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS 429 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc
Confidence 36889988889999999877666 8999999999864
No 145
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.1e-10 Score=142.23 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=132.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~---------- 621 (1052)
.+.++.|.+.+++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.+.....
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~--------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKS--------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 456778888877766665521 11234589999999999999999999987532110
Q ss_pred -----eeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 001560 622 -----AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (1052)
Q Consensus 622 -----~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~ 696 (1052)
..++.++... ......++..+..+-.........|++|||+|.+-. .-.+.|+..+++
T Consensus 82 ~~~~~~Dvieidaas--n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLEE 144 (725)
T PRK07133 82 NVNNSLDIIEMDAAS--NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLEE 144 (725)
T ss_pred hhcCCCcEEEEeccc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhhc
Confidence 0122222211 122333444333322222234456999999998841 224456666666
Q ss_pred hccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCC
Q 001560 697 YGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1052)
Q Consensus 697 ~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~ 776 (1052)
... .+++|.+|+.++.+.+.+++ |+. .+.|.+++.++..+.++..+.+.++.++++.+..++..+.|
T Consensus 145 PP~---------~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G- 211 (725)
T PRK07133 145 PPK---------HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG- 211 (725)
T ss_pred CCC---------ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 433 46777778888899999888 775 79999999999999999988888888999999999999887
Q ss_pred CHHHHHHHHHHHH
Q 001560 777 DAYDLEILVDRTV 789 (1052)
Q Consensus 777 s~~DL~~Lv~~A~ 789 (1052)
+.+++..+++++.
T Consensus 212 slR~AlslLekl~ 224 (725)
T PRK07133 212 SLRDALSIAEQVS 224 (725)
T ss_pred CHHHHHHHHHHHH
Confidence 6677777776654
No 146
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.27 E-value=8.4e-11 Score=127.24 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=109.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhc
Q 001560 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1052)
Q Consensus 589 ~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1052)
...+++|+||+|||||++|+++++.+.... ..+.+++|..+... +. ......+|+|||+|.+-
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLD 103 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcC
Confidence 346799999999999999999999874222 46778887664311 11 12346799999999873
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCC--CCchhhhcCCCc--ceeeeCCCCCHH
Q 001560 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRF--DFHVQLPAPAAS 744 (1052)
Q Consensus 669 ~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~--~Ld~aL~r~gRF--~~~i~i~~Pd~~ 744 (1052)
+ .. ...|...++....... .+++++++..+. .+.+.+.+ || ...+++++|+.+
T Consensus 104 ~-----------~~----~~~L~~~~~~~~~~~~------~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 104 D-----------AQ----QIALFNLFNRVRAHGQ------GALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDA 160 (227)
T ss_pred c-----------hH----HHHHHHHHHHHHHcCC------cEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHH
Confidence 1 11 1223333333322111 134444333322 34566666 66 468999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 745 eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
++.++++......++.++++.+..++...+| +.+++..+++...
T Consensus 161 ~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~ 204 (227)
T PRK08903 161 DKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALD 204 (227)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 9999999888888899999999999997776 7888888888744
No 147
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.27 E-value=8.1e-11 Score=126.55 Aligned_cols=174 Identities=20% Similarity=0.370 Sum_probs=113.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHH-hhhhHHHhhccCCeEEEEeccchhcc
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQA-LSNFISEALDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~-l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1052)
..++||||+|+|||+|++++++++..... ...+.|+++.++........... +.+..... ....+|+|||++.+.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAG 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcC
Confidence 35999999999999999999998763211 25688898887765444433321 22222222 3557999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCC---CchhhhcCCCcc--eeeeCCCCCHH
Q 001560 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 744 (1052)
Q Consensus 670 ~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~r~gRF~--~~i~i~~Pd~~ 744 (1052)
.. .....|..+++.+...+ ..+++++...|.. +++.|.+ ||. ..+.+.+|+.+
T Consensus 112 ---------~~----~~q~~lf~l~n~~~~~~-------k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 112 ---------KQ----RTQEELFHLFNRLIESG-------KQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDE 169 (219)
T ss_dssp ---------HH----HHHHHHHHHHHHHHHTT-------SEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HH
T ss_pred ---------ch----HHHHHHHHHHHHHHhhC-------CeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHH
Confidence 11 22334444444443322 2456666555554 4677888 665 47899999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 001560 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 745 eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~ 790 (1052)
.|.+|++..+..+++.++++++..++....+ +.++|..++++...
T Consensus 170 ~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 170 DRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp HHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876 77888888877643
No 148
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.26 E-value=1.1e-10 Score=145.08 Aligned_cols=214 Identities=15% Similarity=0.206 Sum_probs=140.5
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccC
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~ 634 (1052)
.+.|.+.+++.+.+.+....... .. ...|.+++||+||||||||++|+++|+.++ ..++.++|+.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl-----~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------~~~i~id~se~~~ 526 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL-----GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYME 526 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc-----cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhC------CCcEEeechhhcc
Confidence 46788889888888875442111 00 123345799999999999999999999986 5667778776542
Q ss_pred C---------chhhHHHHhhhhHHHh-hccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cccC
Q 001560 635 E---------KGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRK 702 (1052)
Q Consensus 635 ~---------~~~~~~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~--~~~~ 702 (1052)
. ..+.........+.++ ..+..+||||||+|++-+ .+.+.|+..++.-. ....
T Consensus 527 ~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g 591 (758)
T PRK11034 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNG 591 (758)
T ss_pred cccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCC
Confidence 1 1111100001122222 334558999999999842 45666777776422 1111
Q ss_pred CccCcCcEEEEEecCCC-------------------------CCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhh-
Q 001560 703 SSCGIGPIAFVASAQSL-------------------------EKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR- 756 (1052)
Q Consensus 703 ~~~~~~~V~vIattn~~-------------------------~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~- 756 (1052)
......++++|+|+|.- ..+.|.|.. |++.++.|++.+.++..+|+..++.+
T Consensus 592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 12223467899998831 124466666 99999999999999999999876542
Q ss_pred --------ccCCCCHHHHHHHhhhc--CCCCHHHHHHHHHHHHHHHHhhhc
Q 001560 757 --------RSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRYL 797 (1052)
Q Consensus 757 --------~~~~~sd~~l~~La~~t--eG~s~~DL~~Lv~~A~~~a~~r~~ 797 (1052)
..+.+++..+..|+... ..|-++.|+.++++.+...+.+.+
T Consensus 670 ~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 670 QAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 23558888899888654 456678899999888877776654
No 149
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.1e-10 Score=140.77 Aligned_cols=195 Identities=20% Similarity=0.260 Sum_probs=131.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|+++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+.+....
T Consensus 14 ~f~divGq~~v~~~L~~~i~~--------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQ--------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 456778888777766554421 1123447999999999999999999998753211
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...++.++.+. ......++..+..+..........|+||||+|.+-. .-.+.|+..
T Consensus 80 ~~i~~~~~~d~~ei~~~~--~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS--NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc--cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHH
Confidence 01233344322 223344444333322211223446999999998831 223456666
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+|+.++.+.+.+++ |. ..++|+.++.++..+.+...+.+.++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s 210 (527)
T PRK14969 143 LEEPPE---------HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAA 210 (527)
T ss_pred HhCCCC---------CEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 36777777888888877887 65 3789999999999999998888888888999999999988
Q ss_pred CCCCHHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (1052)
.| +.+++.+++++++.
T Consensus 211 ~G-slr~al~lldqai~ 226 (527)
T PRK14969 211 AG-SMRDALSLLDQAIA 226 (527)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 77 67888888877653
No 150
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=2e-10 Score=136.86 Aligned_cols=195 Identities=18% Similarity=0.185 Sum_probs=132.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~---------- 621 (1052)
.+.++.|.+...+.+...+. . ...+..+|||||+|+|||++|+++|+.+.+.....
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~----~----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALD----N----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CHHHccCcHHHHHHHHHHHH----c----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45677888777666655442 1 12234479999999999999999999986432110
Q ss_pred --------eeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 622 --------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 622 --------~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
..+..++... ......++..+...-........-|++|||+|.+-. ...+.|+..
T Consensus 78 ~~~~~~~h~dv~eldaas--~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~NALLK~ 140 (535)
T PRK08451 78 QSALENRHIDIIEMDAAS--NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAFNALLKT 140 (535)
T ss_pred HHHhhcCCCeEEEecccc--ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHH
Confidence 1233333221 112334443332211111112335999999998831 234556677
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+++.+..+.+.+++ |. ..++|.+++.++..+.++..+...+..++++.+..++...
T Consensus 141 LEEpp~---------~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s 208 (535)
T PRK08451 141 LEEPPS---------YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSG 208 (535)
T ss_pred HhhcCC---------ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776533 36677777778899999998 74 4899999999999999999999889999999999999998
Q ss_pred CCCCHHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~~ 790 (1052)
.| +.+++..++++++.
T Consensus 209 ~G-dlR~alnlLdqai~ 224 (535)
T PRK08451 209 NG-SLRDTLTLLDQAII 224 (535)
T ss_pred CC-cHHHHHHHHHHHHH
Confidence 87 78888888887764
No 151
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.26 E-value=1.5e-10 Score=133.57 Aligned_cols=190 Identities=19% Similarity=0.265 Sum_probs=128.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.+.++.|.+..++.+.+.+.. ...+..+||+||||+|||++|+++++.+.+....
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~--------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKN--------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 455677888888777664421 1223568999999999999999999998643110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhh----ccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~ 689 (1052)
...++.++... ......+ ++++..+. .....|++|||+|.+.. ...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~~----~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~~~ 136 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS--NNGVDDI----REILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAFNA 136 (355)
T ss_pred HHHhcCCCCCEEEeeccc--cCCHHHH----HHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHHHH
Confidence 11233343321 1122223 33333332 12345999999998731 12334
Q ss_pred HHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHH
Q 001560 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1052)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~L 769 (1052)
|+..+++... .+.+|.++++++.+.+.+++ |+. .+++++|+.++..++++.++++.+..++++.+..+
T Consensus 137 Ll~~le~~~~---------~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l 204 (355)
T TIGR02397 137 LLKTLEEPPE---------HVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELI 204 (355)
T ss_pred HHHHHhCCcc---------ceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555544322 36677777888888888888 764 78999999999999999999988989999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHH
Q 001560 770 ASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 770 a~~teG~s~~DL~~Lv~~A~ 789 (1052)
+..+.| +++.+...++++.
T Consensus 205 ~~~~~g-~~~~a~~~lekl~ 223 (355)
T TIGR02397 205 ARAADG-SLRDALSLLDQLI 223 (355)
T ss_pred HHHcCC-ChHHHHHHHHHHH
Confidence 998877 6666666666554
No 152
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=2.1e-10 Score=133.08 Aligned_cols=195 Identities=16% Similarity=0.162 Sum_probs=122.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.++++.|.+..++.+++.+..-.. .+...+...+.++||+||+|+|||++|+++|+.+.+....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~-----~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA-----DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc-----cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 356788888888887776642211 1122233456679999999999999999999988654210
Q ss_pred ------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHH
Q 001560 621 ------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1052)
Q Consensus 621 ------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~l 694 (1052)
...+.++.+.. .....++++..++.+..........|+||||+|.+.. .-.+.|+..+
T Consensus 78 ~~~~~~hpD~~~i~~~~-~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------~aanaLLk~L 141 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEG-LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------RAANALLKAV 141 (394)
T ss_pred HHhcCCCCCEEEecccc-ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------HHHHHHHHHh
Confidence 01133333322 1122344443333332222223456999999999842 1234566666
Q ss_pred HHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcC
Q 001560 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (1052)
Q Consensus 695 d~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~te 774 (1052)
++... ++++|.+|++++.+.+.+++ |+. .+.|++|+.++..++|... . .++++....++..+.
T Consensus 142 Eep~~---------~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~---~--~~~~~~a~~la~~s~ 204 (394)
T PRK07940 142 EEPPP---------RTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRR---D--GVDPETARRAARASQ 204 (394)
T ss_pred hcCCC---------CCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHh---c--CCCHHHHHHHHHHcC
Confidence 65432 24455555558899999998 764 8999999999987777631 1 256777888899999
Q ss_pred CCCHHHHHHH
Q 001560 775 GYDAYDLEIL 784 (1052)
Q Consensus 775 G~s~~DL~~L 784 (1052)
|..+..+..+
T Consensus 205 G~~~~A~~l~ 214 (394)
T PRK07940 205 GHIGRARRLA 214 (394)
T ss_pred CCHHHHHHHh
Confidence 9776555443
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=2.8e-11 Score=153.40 Aligned_cols=101 Identities=25% Similarity=0.399 Sum_probs=83.2
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc----------CCeEEEee
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~----------~~~~i~v~ 910 (1052)
..++.++|.++..+.+.+.+. .+...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 467889999886666655544 2334579999999999999999999987 78999999
Q ss_pred chhhh--hhhhcccHHHHHHHHHHH-hcCCCEEEEEeCCCccCCcCC
Q 001560 911 GPELL--NKYIGASEQAVRDIFSKA-TAAAPCLLFFDEFDSIAPKRG 954 (1052)
Q Consensus 911 ~s~l~--~~yvGese~~ir~lf~~A-~~~~p~ILfiDEid~l~~~r~ 954 (1052)
.+.++ .+|.|+.++.++.+|+.+ +...++||||||++.+.+.++
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~ 288 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK 288 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCC
Confidence 98887 569999999999999985 445789999999999987654
No 154
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.7e-10 Score=140.67 Aligned_cols=194 Identities=21% Similarity=0.210 Sum_probs=133.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|+++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+.+....
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDT--------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 456788888777777665421 1223558999999999999999999998754221
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...++.++... .....+++..+..+-.........|+||||+|.+-. .-.+.|+..
T Consensus 80 ~~i~~g~~~d~~eid~~s--~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~naLLk~ 142 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS--NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFNALLKT 142 (576)
T ss_pred HHHhcCCCCCeeeeeccC--ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHHHHHHH
Confidence 11234444322 122334443332221111122345999999998831 224566666
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|.+|+.++.+.+.+++ |.. .++|..++.++....+...+++.++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 143 LEEPPP---------HVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHcCCC---------CeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 776443 47777788888999999988 654 788999999999999999998889999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +.+++..++++++
T Consensus 211 ~G-~lr~al~~Ldqli 225 (576)
T PRK14965 211 DG-SMRDSLSTLDQVL 225 (576)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 88 6677777776654
No 155
>PRK08727 hypothetical protein; Validated
Probab=99.24 E-value=1.4e-10 Score=126.07 Aligned_cols=162 Identities=23% Similarity=0.322 Sum_probs=108.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
..++|+||+|||||+|+++++.++.... ..+.+++..++.. .+.+.+... ....+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQ 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCC
Confidence 4499999999999999999999875432 3456666544332 222333322 34569999999988521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecC-CCCCC---chhhhcCCCc--ceeeeCCCCCHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ-SLEKI---PQSLTSSGRF--DFHVQLPAPAAS 744 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn-~~~~L---d~aL~r~gRF--~~~i~i~~Pd~~ 744 (1052)
. .....+. +.++..... ...+|.|++ .+..+ .+.+.+ || ...+.+++|+.+
T Consensus 109 ~---------~~~~~lf----~l~n~~~~~--------~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e 165 (233)
T PRK08727 109 R---------EDEVALF----DFHNRARAA--------GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDV 165 (233)
T ss_pred h---------HHHHHHH----HHHHHHHHc--------CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHH
Confidence 1 1111233 333333221 123444444 55554 688888 76 457899999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 745 eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+|.+|++.++..+++.++++.+..|+..+.| +.+.+..++++..
T Consensus 166 ~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 166 ARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 9999999988888899999999999999886 4555555566544
No 156
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=3.1e-10 Score=131.83 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=126.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------ceeeEE
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------LVAHIV 625 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------~~~~v~ 625 (1052)
.++++.|.+..++.+.+.+.. ...+.++|||||||+|||++|+++|+.+..... ....+.
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~--------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIEN--------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 455777888777766665521 123467999999999999999999999864211 011222
Q ss_pred EEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCcc
Q 001560 626 FVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1052)
Q Consensus 626 ~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1052)
.++.. .......++..+..+-.......+.|++|||+|.+.. ...+.|...++....
T Consensus 81 ~l~~~--~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~~~------ 137 (367)
T PRK14970 81 ELDAA--SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEPPA------ 137 (367)
T ss_pred Eeccc--cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCCCC------
Confidence 22221 1122233333333221111223456999999998731 123344444444221
Q ss_pred CcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHH
Q 001560 706 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILV 785 (1052)
Q Consensus 706 ~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv 785 (1052)
..++|.+++....+.+++.+ |+. .+++++|+.++...++...+.+.+..++++.+..++..+.| +.+.+...+
T Consensus 138 ---~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~l 210 (367)
T PRK14970 138 ---HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIF 210 (367)
T ss_pred ---ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 25566667777888888887 654 68999999999999999999888999999999999998876 666666666
Q ss_pred HHHH
Q 001560 786 DRTV 789 (1052)
Q Consensus 786 ~~A~ 789 (1052)
++..
T Consensus 211 ekl~ 214 (367)
T PRK14970 211 DRVV 214 (367)
T ss_pred HHHH
Confidence 6554
No 157
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.2e-10 Score=137.91 Aligned_cols=192 Identities=17% Similarity=0.221 Sum_probs=128.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|+++.|.+..++.+.+.+. .. ..+..+||+||+|+|||++|+.+|+.+.+....
T Consensus 14 sf~dIiGQe~v~~~L~~ai~----~~----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQ----EN----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHH----cC----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 35566777666555544332 11 112469999999999999999999998753110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHH-hhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~-a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~ 692 (1052)
...++.++... ......++. +.+.+.. .......|+||||+|.+-. ...+.|+.
T Consensus 80 ~~i~~g~hpDv~eId~a~--~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a~naLLk 141 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS--NRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTR---------------EAFNALLK 141 (624)
T ss_pred HHHhcCCCCceEEEeccc--ccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCH---------------HHHHHHHH
Confidence 11244444322 122334443 2222222 2223456999999999831 22455666
Q ss_pred HHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhh
Q 001560 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1052)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~ 772 (1052)
.+++... .+++|++|+.+..+.+.+++ |+. .++|++++.++..++|+..+.+.+..++++.+..++..
T Consensus 142 ~LEEP~~---------~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 142 TLEEPPA---------RVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HhhccCC---------CEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665432 47788888888888888887 765 78999999999999999988888888999999999998
Q ss_pred cCCCCHHHHHHHHHHH
Q 001560 773 CDGYDAYDLEILVDRT 788 (1052)
Q Consensus 773 teG~s~~DL~~Lv~~A 788 (1052)
+.| +.+++..+++++
T Consensus 210 s~G-dlR~Al~lLeql 224 (624)
T PRK14959 210 AAG-SVRDSMSLLGQV 224 (624)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 887 555665666544
No 158
>PRK05642 DNA replication initiation factor; Validated
Probab=99.24 E-value=1.8e-10 Score=125.15 Aligned_cols=166 Identities=19% Similarity=0.268 Sum_probs=114.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
.+++|+||+|+|||+|++++++++.... ..+.++++.++.... ..+.+... ...+|+|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~---~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGK 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCC
Confidence 5699999999999999999998875322 456788877765321 11222221 2358999999987421
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCC---chhhhcCCCc--ceeeeCCCCCHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRF--DFHVQLPAPAASE 745 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L---d~aL~r~gRF--~~~i~i~~Pd~~e 745 (1052)
.. ....|..+++.+...+ ..++++++..+..+ .+.+++ || ...+.+.+|+.++
T Consensus 113 ---------~~----~~~~Lf~l~n~~~~~g-------~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 113 ---------AD----WEEALFHLFNRLRDSG-------RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDED 170 (234)
T ss_pred ---------hH----HHHHHHHHHHHHHhcC-------CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHH
Confidence 11 1122333444333221 35666666555433 578888 77 3678899999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 001560 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1052)
Q Consensus 746 R~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a 792 (1052)
|.++++..+..+++.++++++..++.+.++ +.+.+..++++....+
T Consensus 171 ~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 171 KLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQAS 216 (234)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 999999777777889999999999999887 7788888877765433
No 159
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=3.2e-10 Score=137.69 Aligned_cols=194 Identities=18% Similarity=0.232 Sum_probs=133.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~---------- 621 (1052)
.|.++.|.+..++.+.+.+.. ...+.++||+||+|+|||++|+++|+.+.+.....
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~--------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFET--------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 466788888877777664421 12345699999999999999999999987542100
Q ss_pred -------------eeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHH
Q 001560 622 -------------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1052)
Q Consensus 622 -------------~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~ 688 (1052)
..++.++... ....++++..+..+-.........|+||||+|.+-. .-.+
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s--~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~n 150 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAAS--HTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAFN 150 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHHH
Confidence 1122333221 122344444433322222223456999999998831 2245
Q ss_pred HHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHH
Q 001560 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1052)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~ 768 (1052)
.|+..+++... .+.+|.+++..+.+.+.+++ |.. .++|+.++.++..+.++..+++.+..++++.+..
T Consensus 151 aLLKtLEePp~---------~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~l 218 (598)
T PRK09111 151 ALLKTLEEPPP---------HVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALAL 218 (598)
T ss_pred HHHHHHHhCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56666666443 36677777777778888887 664 7999999999999999999998899999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHH
Q 001560 769 VASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 769 La~~teG~s~~DL~~Lv~~A~ 789 (1052)
++..+.| +.+++..++++++
T Consensus 219 Ia~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 219 IARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9999887 6778877777764
No 160
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.23 E-value=3.1e-11 Score=153.23 Aligned_cols=101 Identities=26% Similarity=0.366 Sum_probs=87.4
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc----------CCeEEEee
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~----------~~~~i~v~ 910 (1052)
..++.++|.++..+.+.+.+. .+...+++|+||||||||++|+.+|... +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 457889999988888887765 2345689999999999999999999886 47899999
Q ss_pred chhhh--hhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCC
Q 001560 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1052)
Q Consensus 911 ~s~l~--~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~ 954 (1052)
++.++ .+|.|+.|+.++.+|+.+....++||||||+|.+.+.++
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~ 288 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGA 288 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCC
Confidence 99988 579999999999999999888889999999999987654
No 161
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=3.5e-10 Score=136.80 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=133.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.+.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.+....
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIES--------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 456788888888777665531 1123459999999999999999999998753110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...++.++... ......++.....+..........|++|||+|.+-. ...+.|+..
T Consensus 80 ~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~ 142 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKT 142 (563)
T ss_pred HHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHh
Confidence 01222232211 122334443333322222234556999999998831 223455555
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
+++... .+.+|++++.+..+.+.+++ |+. .++|.+++.++..++++..+...+..++++.+..++...
T Consensus 143 LEepp~---------~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s 210 (563)
T PRK06647 143 IEEPPP---------YIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS 210 (563)
T ss_pred hccCCC---------CEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 655332 46777777778889999988 766 689999999999999999988888899999999999988
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +.+++..++++++
T Consensus 211 ~G-dlR~alslLdkli 225 (563)
T PRK06647 211 TG-SVRDAYTLFDQVV 225 (563)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 7888888887764
No 162
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=4.1e-10 Score=134.24 Aligned_cols=194 Identities=18% Similarity=0.233 Sum_probs=127.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|.++.|.+.....+.+.+.. ...+..+||+||+|+|||++|+.+|+.+.+....
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKL--------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred cHHHccChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 355777888877777665522 1122447899999999999999999998742110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 621 -------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
...+..++.+. ......++.....+-.......+.|++|||+|.+.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas--~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~ 142 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS--NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKT 142 (486)
T ss_pred HHHhcCCCCcEEEEeCcc--CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHH
Confidence 01123333221 122233333222221112223456999999998731 123445555
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
++.... .+++|.+++.++.+++.+.+ |+. .+.+++++.++...+++..++..++.++++.+..++..+
T Consensus 143 LEepp~---------~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s 210 (486)
T PRK14953 143 LEEPPP---------RTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS 210 (486)
T ss_pred HhcCCC---------CeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 554322 35566666777788888887 665 789999999999999999999889999999999999988
Q ss_pred CCCCHHHHHHHHHHHH
Q 001560 774 DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~ 789 (1052)
.| +.+++..+++.++
T Consensus 211 ~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 211 EG-GMRDAASLLDQAS 225 (486)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 6777777777764
No 163
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.21 E-value=2.1e-10 Score=141.92 Aligned_cols=161 Identities=20% Similarity=0.319 Sum_probs=109.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHh-hccCCeEEEEeccchhcc
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~ 669 (1052)
.+++|+|||||||||+|+++|+.+. .++..+++.... ...++..+....... ......+|||||+|.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~------~~f~~lna~~~~---i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTR------AHFSSLNAVLAG---VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc------Ccceeehhhhhh---hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 4699999999999999999999876 455666664311 122233232221111 123467999999998731
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCC--CCCCchhhhcCCCcceeeeCCCCCHHHHH
Q 001560 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1052)
Q Consensus 670 ~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~--~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~ 747 (1052)
...+.|...++. +.+++|++++. ...+++++.+ |. ..+.+++++.+++.
T Consensus 124 ---------------~qQdaLL~~lE~-----------g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~ 174 (725)
T PRK13341 124 ---------------AQQDALLPWVEN-----------GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLH 174 (725)
T ss_pred ---------------HHHHHHHHHhcC-----------ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHH
Confidence 112234443332 13667765543 3467888888 54 36899999999999
Q ss_pred HHHHHHHh-------hccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 001560 748 AILEHEIQ-------RRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 748 ~IL~~~l~-------~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~ 790 (1052)
.|++..+. ..++.++++.+..|+..+.| +.+.+.++++.++.
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99998887 34577899999999999866 67888888877653
No 164
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=6.7e-10 Score=131.56 Aligned_cols=194 Identities=21% Similarity=0.240 Sum_probs=130.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.+.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.+....
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~--------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRF--------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 456778888777766664421 1223559999999999999999999998643110
Q ss_pred --------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001560 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1052)
Q Consensus 621 --------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~ 692 (1052)
...++.++... ......++...+.+-.........|+||||+|.+.. ...+.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~--~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGAS--HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeeccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHHHH
Confidence 01233333221 112233333322222222224567999999998841 22455666
Q ss_pred HHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhh
Q 001560 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1052)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~ 772 (1052)
.++.... .+.+|++++....+.+.+++ |+. .++++.++.++..+.++..+++.+..++++.+..++..
T Consensus 144 ~lEep~~---------~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 144 TLEEPPQ---------HVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HhhcCCC---------CceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665432 36677777888888888888 765 78999999999999999988888888999999999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 001560 773 CDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 773 teG~s~~DL~~Lv~~A~ 789 (1052)
+.| +.+++.++++...
T Consensus 212 s~g-dlr~a~~~Lekl~ 227 (451)
T PRK06305 212 AQG-SLRDAESLYDYVV 227 (451)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 876 6666666666543
No 165
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.19 E-value=4.4e-11 Score=139.29 Aligned_cols=110 Identities=24% Similarity=0.291 Sum_probs=79.3
Q ss_pred ccccchhHHHHHHHHhhcccCChhhhhc---CCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh-hhhhc
Q 001560 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQ---APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIG 920 (1052)
Q Consensus 845 ~i~g~~~vk~~l~~~i~~~~~~~~~~~~---~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~-~~yvG 920 (1052)
.++|++++++.+...+....+....... .......++||+||||||||++|+++|+.++.+|+.++++.+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3899999999987665422111100000 0112457899999999999999999999999999999998876 47999
Q ss_pred ccHHH-HHHHHHHH----hcCCCEEEEEeCCCccCCcCC
Q 001560 921 ASEQA-VRDIFSKA----TAAAPCLLFFDEFDSIAPKRG 954 (1052)
Q Consensus 921 ese~~-ir~lf~~A----~~~~p~ILfiDEid~l~~~r~ 954 (1052)
+.... +..+++.+ ....++||||||||++..++.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~ 190 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE 190 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccC
Confidence 86544 45555432 234678999999999987643
No 166
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.19 E-value=8.2e-11 Score=134.37 Aligned_cols=89 Identities=24% Similarity=0.363 Sum_probs=66.8
Q ss_pred ccccchhHHHHHHHHhhcccCChhhhhcC-CcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhh-hhhc-c
Q 001560 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQA-PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG-A 921 (1052)
Q Consensus 845 ~i~g~~~vk~~l~~~i~~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~-~yvG-e 921 (1052)
-++|+++.++.+...+....+........ .-..+.++||+||||||||++|+++|..++.+|+.++++++.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 47899999999876655211111110000 1223578999999999999999999999999999999998874 7999 5
Q ss_pred cHHHHHHHHHHH
Q 001560 922 SEQAVRDIFSKA 933 (1052)
Q Consensus 922 se~~ir~lf~~A 933 (1052)
.+..++.+|+.|
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 778888888776
No 167
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.18 E-value=8e-10 Score=125.54 Aligned_cols=191 Identities=20% Similarity=0.243 Sum_probs=123.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
.+.++.|.+..++.+...+.. ....+++|+||||||||++++++++++..... ...++.+++++
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~---------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~ 78 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE---------------KNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASD 78 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC---------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEecccc
Confidence 345666777776666554421 11135999999999999999999999854322 13344455443
Q ss_pred ccCCchhhHHHHhhhhHHHh-hc-cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 632 LSLEKGPIIRQALSNFISEA-LD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~a-~~-~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
..+ .......+.+..... .. ..+.+++|||+|.+.. .....|...++.... .
T Consensus 79 ~~~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------~~~~~L~~~le~~~~---------~ 132 (319)
T PRK00440 79 ERG--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------DAQQALRRTMEMYSQ---------N 132 (319)
T ss_pred ccc--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------HHHHHHHHHHhcCCC---------C
Confidence 221 122223333332221 11 2356999999998831 112344555554332 2
Q ss_pred EEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A 788 (1052)
..+|.+++....+.+.+.+ |+. .+++++++.++...+++.++.+.+..++++.+..++..+.| +.+.+...++.+
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 4566667777777777777 665 68999999999999999999988999999999999998876 455555555543
No 168
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.18 E-value=4.7e-10 Score=130.07 Aligned_cols=198 Identities=21% Similarity=0.256 Sum_probs=126.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccC-Cchhh-HHHHhhhhHHHh----hccCCeEEEEec
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-EKGPI-IRQALSNFISEA----LDHAPSIVIFDN 663 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~-~~~~~-~~~~l~~~f~~a----~~~~PsIL~IDE 663 (1052)
.+++||+||||||||++|+++|+.++ .++..+++..+.. .+.+. .+..+...+..+ ....++||||||
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~------~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDE 189 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDE 189 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC------CCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecc
Confidence 46899999999999999999999886 5666777776642 23332 344444444432 234678999999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccCCccCcCcEEEEEecCCC--------------------
Q 001560 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSL-------------------- 719 (1052)
Q Consensus 664 iD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~V~vIattn~~-------------------- 719 (1052)
+|.+.+....+.... ...-..+.+.|+..+++... .........+.++|.|+|-.
T Consensus 190 Idkl~~~~~~~s~~~-dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~ 268 (413)
T TIGR00382 190 IDKISRKSENPSITR-DVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGK 268 (413)
T ss_pred cchhchhhccccccc-cccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhh
Confidence 999975322211110 00111455666666654321 11111112345666666540
Q ss_pred -------C-----------------------CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHH----Hh---------h
Q 001560 720 -------E-----------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHE----IQ---------R 756 (1052)
Q Consensus 720 -------~-----------------------~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~----l~---------~ 756 (1052)
+ .+.|+|. ||++..+.|.+.+.+++.+|+... ++ .
T Consensus 269 ~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~g 346 (413)
T TIGR00382 269 SSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDN 346 (413)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 0113333 499999999999999999998752 22 1
Q ss_pred ccCCCCHHHHHHHhhh--cCCCCHHHHHHHHHHHHHHHHhhh
Q 001560 757 RSLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (1052)
Q Consensus 757 ~~~~~sd~~l~~La~~--teG~s~~DL~~Lv~~A~~~a~~r~ 796 (1052)
..+.+++++++.|++. ...+-++.|+.++++.+...+...
T Consensus 347 i~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 347 VELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred eEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 2345889999999987 456778899999998887766654
No 169
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.17 E-value=9e-11 Score=134.12 Aligned_cols=89 Identities=25% Similarity=0.356 Sum_probs=67.3
Q ss_pred ccccchhHHHHHHHHhhcccCChhhhhcCC-cccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhh-hhhc-c
Q 001560 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG-A 921 (1052)
Q Consensus 845 ~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~-~yvG-e 921 (1052)
.++|++++++.+...+....+......... -..+.++||+||||||||++|+++|+.++.+|+.++++++.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 489999999999876642111111100100 112578999999999999999999999999999999999885 7999 5
Q ss_pred cHHHHHHHHHHH
Q 001560 922 SEQAVRDIFSKA 933 (1052)
Q Consensus 922 se~~ir~lf~~A 933 (1052)
.+..++++|+.|
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 578888888887
No 170
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.1e-09 Score=125.99 Aligned_cols=220 Identities=20% Similarity=0.260 Sum_probs=143.3
Q ss_pred cccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCC
Q 001560 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1052)
Q Consensus 556 l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~ 635 (1052)
+.+.+..++.+...+...+.. ..|.++++||+||||||.+++.+++++...... ..++++||....+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~-----------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~-~~~~yINc~~~~t~ 86 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG-----------ERPSNIIIYGPTGTGKTATVKFVMEELEESSAN-VEVVYINCLELRTP 86 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC-----------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc-CceEEEeeeeCCCH
Confidence 677888888888877665543 334569999999999999999999999744321 22899999775543
Q ss_pred ch--hh--------------HHHHhhhhHHHhh-ccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 001560 636 KG--PI--------------IRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1052)
Q Consensus 636 ~~--~~--------------~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~ 698 (1052)
+. .. ..+.++.+++... .....|++|||+|.|..... .++..|.+..+..
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc-
Confidence 21 00 1111222222222 23456999999999973211 2344444433333
Q ss_pred cccCCccCcCcEEEEEecCCCC---CCchhhhcCCCcc-eeeeCCCCCHHHHHHHHHHHHhh--ccCCCCHHHHHHHhh-
Q 001560 699 EKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDEILLDVAS- 771 (1052)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~~---~Ld~aL~r~gRF~-~~i~i~~Pd~~eR~~IL~~~l~~--~~~~~sd~~l~~La~- 771 (1052)
...+.+|+.+|..+ .+++.+.+ +|. ..+.||+++.+|...|++...+. ....++++.+..+|.
T Consensus 154 --------~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~ 223 (366)
T COG1474 154 --------KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAAL 223 (366)
T ss_pred --------ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 12588999999864 67788887 443 35899999999999999987764 233467777665554
Q ss_pred --hcCCCCHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccccccc
Q 001560 772 --KCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1052)
Q Consensus 772 --~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1052)
...| +++-.-.+++.|...|-.+ ....++.++..+|...
T Consensus 224 ~a~~~G-DAR~aidilr~A~eiAe~~-----------~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 224 VAAESG-DARKAIDILRRAGEIAERE-----------GSRKVSEDHVREAQEE 264 (366)
T ss_pred HHHcCc-cHHHHHHHHHHHHHHHHhh-----------CCCCcCHHHHHHHHHH
Confidence 3444 5555667788888777655 2345677777666433
No 171
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=3.9e-10 Score=133.56 Aligned_cols=196 Identities=16% Similarity=0.260 Sum_probs=127.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHH---HhhhhHHHhhccCCeEEEEeccchh
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ---ALSNFISEALDHAPSIVIFDNLDSI 667 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~---~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1052)
.+++|||++|+|||+|++++++++..... ...+.++++.++.......... .+.+.... .....+|+|||++.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 45999999999999999999998753211 1467788887766444333322 12222121 135679999999987
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCC---CCchhhhcCCCcc--eeeeCCCCC
Q 001560 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPA 742 (1052)
Q Consensus 668 ~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~r~gRF~--~~i~i~~Pd 742 (1052)
.+. ......+...+....+ .+ ..+|+++...|. .+++.+.+ ||. ..+.+++|+
T Consensus 219 ~~k---------~~~~e~lf~l~N~~~~----~~-------k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd 276 (450)
T PRK14087 219 SYK---------EKTNEIFFTIFNNFIE----ND-------KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLD 276 (450)
T ss_pred cCC---------HHHHHHHHHHHHHHHH----cC-------CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcC
Confidence 421 1112233443333322 21 123444444444 35678888 664 668999999
Q ss_pred HHHHHHHHHHHHhhccC--CCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccccc
Q 001560 743 ASERKAILEHEIQRRSL--ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1052)
Q Consensus 743 ~~eR~~IL~~~l~~~~~--~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al 820 (1052)
.++|.+|+++.++..++ .++++++..|+..+.| +++.+..++.++...+.... ....++.+.+.+++
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~----------~~~~it~~~v~~~l 345 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP----------EEKIITIEIVSDLF 345 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc----------CCCCCCHHHHHHHH
Confidence 99999999999987765 6899999999999988 78899999988874443321 01236666666655
Q ss_pred cc
Q 001560 821 HE 822 (1052)
Q Consensus 821 ~~ 822 (1052)
++
T Consensus 346 ~~ 347 (450)
T PRK14087 346 RD 347 (450)
T ss_pred hh
Confidence 54
No 172
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.16 E-value=1e-10 Score=135.57 Aligned_cols=109 Identities=22% Similarity=0.355 Sum_probs=78.1
Q ss_pred cccccchhHHHHHHHHhhcccCChhhhh--cC----Cc-ccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh-
Q 001560 844 DDVGGLTDIQNAIKEMIELPSKFPNIFA--QA----PL-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL- 915 (1052)
Q Consensus 844 ~~i~g~~~vk~~l~~~i~~~~~~~~~~~--~~----~~-~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~- 915 (1052)
..++|+++.++.+...+... |..+.. .. ++ ....++||+||||||||++|+++|+.++.+|..++++.+.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h--~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNH--YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred ceecCHHHHHHHHHHHHHHH--HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 34799999999987665311 111100 00 11 1246899999999999999999999999999999988875
Q ss_pred hhhhcccH-HHHHHHHHHH----hcCCCEEEEEeCCCccCCcCC
Q 001560 916 NKYIGASE-QAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRG 954 (1052)
Q Consensus 916 ~~yvGese-~~ir~lf~~A----~~~~p~ILfiDEid~l~~~r~ 954 (1052)
..|+|+.. ..+..+++.+ ....++||||||+|++.+++.
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~ 198 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSE 198 (413)
T ss_pred cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhc
Confidence 36999864 4455555433 234677999999999987653
No 173
>PRK06620 hypothetical protein; Validated
Probab=99.15 E-value=5.5e-10 Score=119.60 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=101.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
..++||||||||||+|++++++..+ .. ++...... .+.+ ....+|+|||+|.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~------~~--~~~~~~~~-----------~~~~-----~~~d~lliDdi~~~~-- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN------AY--IIKDIFFN-----------EEIL-----EKYNAFIIEDIENWQ-- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC------CE--Ecchhhhc-----------hhHH-----hcCCEEEEeccccch--
Confidence 5699999999999999999988754 21 12211100 0111 233689999998541
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCC--CchhhhcCCCcc--eeeeCCCCCHHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD--FHVQLPAPAASER 746 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~--Ld~aL~r~gRF~--~~i~i~~Pd~~eR 746 (1052)
. ..+...+....+ .+ ..++++++..+.. + +.|++ |+. ..+.+++|+.+.+
T Consensus 99 ---------~---~~lf~l~N~~~e----~g-------~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~ 152 (214)
T PRK06620 99 ---------E---PALLHIFNIINE----KQ-------KYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELI 152 (214)
T ss_pred ---------H---HHHHHHHHHHHh----cC-------CEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHH
Confidence 0 133333333222 11 3567766666554 5 77888 665 4689999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 747 ~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
.++++..+..+++.+++++++.|+.+..+ +.+.+..++++..
T Consensus 153 ~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 194 (214)
T PRK06620 153 KILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENIN 194 (214)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 99999999888899999999999999987 6777877777743
No 174
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.15 E-value=1.4e-10 Score=146.67 Aligned_cols=101 Identities=26% Similarity=0.371 Sum_probs=81.8
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc----------CCeEEEee
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~----------~~~~i~v~ 910 (1052)
..++.++|.++....+.+.+. .+...+++|+||||||||++|+.+|+.+ +.+++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 567899999887555555443 1334579999999999999999999876 35688888
Q ss_pred chhhh--hhhhcccHHHHHHHHHHHhc-CCCEEEEEeCCCccCCcCC
Q 001560 911 GPELL--NKYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRG 954 (1052)
Q Consensus 911 ~s~l~--~~yvGese~~ir~lf~~A~~-~~p~ILfiDEid~l~~~r~ 954 (1052)
.+.+. .+|.|+.+..++.+|+.+.. ..++||||||++.+.+.++
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~ 297 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGG 297 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCC
Confidence 88876 36999999999999999864 5688999999999998664
No 175
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.14 E-value=6.2e-10 Score=127.29 Aligned_cols=136 Identities=20% Similarity=0.283 Sum_probs=85.3
Q ss_pred CCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-cCCccCcCcEEEEEecC----CCCCCchhhhcC
Q 001560 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-RKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (1052)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~-~~~~~~~~~V~vIattn----~~~~Ld~aL~r~ 729 (1052)
+.+|+||||+|+++....... ......-+.+.|+.++++..-. ........++++|++.- .+.+|-|.|.-
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~---~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSG---ADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCC---CCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 456999999999986432111 1111224566677777763211 11122334688887643 34455566654
Q ss_pred CCcceeeeCCCCCHHHHHHHHH----HHH-------hh--ccCCCCHHHHHHHhhhc-------CCCCHHHHHHHHHHHH
Q 001560 730 GRFDFHVQLPAPAASERKAILE----HEI-------QR--RSLECSDEILLDVASKC-------DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 730 gRF~~~i~i~~Pd~~eR~~IL~----~~l-------~~--~~~~~sd~~l~~La~~t-------eG~s~~DL~~Lv~~A~ 789 (1052)
||+..+.+.+++.++..+||. ..+ +. ..+.++++.+..+|... ++.-++-|..++++.+
T Consensus 323 -R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 323 -RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999983 222 22 23457888888877664 4556667777777766
Q ss_pred HHHHhh
Q 001560 790 HAAVGR 795 (1052)
Q Consensus 790 ~~a~~r 795 (1052)
......
T Consensus 402 ~d~~fe 407 (441)
T TIGR00390 402 EDISFE 407 (441)
T ss_pred HHHHhc
Confidence 554433
No 176
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.14 E-value=2.6e-10 Score=134.28 Aligned_cols=195 Identities=17% Similarity=0.238 Sum_probs=142.4
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce-----------
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV----------- 621 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~----------- 621 (1052)
|.++.|.+.....+.+.+..- .-..+.||+||.|+||||+||.+|+.+++.....
T Consensus 15 F~evvGQe~v~~~L~nal~~~--------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENG--------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhC--------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 556778877777776655211 1124589999999999999999999998653211
Q ss_pred -------eeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHH
Q 001560 622 -------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1052)
Q Consensus 622 -------~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~l 694 (1052)
..++++|. ......++++..++++.........-|.+|||+|+|-. ...+.|+..+
T Consensus 81 ~I~~g~~~DviEiDa--ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~---------------~afNALLKTL 143 (515)
T COG2812 81 EINEGSLIDVIEIDA--ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK---------------QAFNALLKTL 143 (515)
T ss_pred hhhcCCcccchhhhh--hhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH---------------HHHHHHhccc
Confidence 11111111 12334556666665555555555667999999999841 3344555555
Q ss_pred HHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcC
Q 001560 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (1052)
Q Consensus 695 d~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~te 774 (1052)
++... .|.+|.+|+.++.++..+++ |.. ++.|...+.++....|..++.+.++.++++.+..+|+..+
T Consensus 144 EEPP~---------hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~ 211 (515)
T COG2812 144 EEPPS---------HVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE 211 (515)
T ss_pred ccCcc---------CeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC
Confidence 55332 58999999999999999988 554 5779999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 001560 775 GYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 775 G~s~~DL~~Lv~~A~~~ 791 (1052)
| +.+|...+++.+...
T Consensus 212 G-s~RDalslLDq~i~~ 227 (515)
T COG2812 212 G-SLRDALSLLDQAIAF 227 (515)
T ss_pred C-ChhhHHHHHHHHHHc
Confidence 8 789999999988744
No 177
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.14 E-value=8e-10 Score=126.47 Aligned_cols=134 Identities=21% Similarity=0.316 Sum_probs=85.1
Q ss_pred CCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-cCCccCcCcEEEEEecC----CCCCCchhhhcC
Q 001560 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-RKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (1052)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~-~~~~~~~~~V~vIattn----~~~~Ld~aL~r~ 729 (1052)
+.+|+||||+|+++...... + ......-+.+.|+.++++..-. ........+|++|++.- .+.++-|.|..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~-~--~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS-G--PDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCC-C--CCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 44699999999999643221 1 1112224666677777763211 11122234688887643 34555566665
Q ss_pred CCcceeeeCCCCCHHHHHHHHH----HHHh---------hccCCCCHHHHHHHhhhc-------CCCCHHHHHHHHHHHH
Q 001560 730 GRFDFHVQLPAPAASERKAILE----HEIQ---------RRSLECSDEILLDVASKC-------DGYDAYDLEILVDRTV 789 (1052)
Q Consensus 730 gRF~~~i~i~~Pd~~eR~~IL~----~~l~---------~~~~~~sd~~l~~La~~t-------eG~s~~DL~~Lv~~A~ 789 (1052)
||+..+.+.+++.++..+||. ..++ ...+.++++.+..+|+.. ++.-++-|..++++.+
T Consensus 325 -R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 325 -RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999983 2222 223558888888887764 3555667777777766
Q ss_pred HHHH
Q 001560 790 HAAV 793 (1052)
Q Consensus 790 ~~a~ 793 (1052)
....
T Consensus 404 ~d~~ 407 (443)
T PRK05201 404 EDIS 407 (443)
T ss_pred HHHh
Confidence 5544
No 178
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.3e-09 Score=133.40 Aligned_cols=192 Identities=20% Similarity=0.241 Sum_probs=126.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.+.++.|.+..+..+.+.+.. . ..+.++||+||+|+|||++|+++|+.+.+....
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~----~----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALIS----N----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred cHhhccChHHHHHHHHHHHHc----C----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 355677777776665554421 1 122469999999999999999999998753210
Q ss_pred ---------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHH
Q 001560 621 ---------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1052)
Q Consensus 621 ---------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~ 691 (1052)
...++.++.. .......++..+..+..........|+||||+|.|-. .-.+.|+
T Consensus 80 ~C~~i~~g~h~D~~ei~~~--~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naLL 142 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA--SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNALL 142 (620)
T ss_pred HHHHHhcCCCccEEEEecc--ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHHH
Confidence 0123333322 1122334444333322111223346999999998831 2345566
Q ss_pred HHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhh
Q 001560 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1052)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~ 771 (1052)
..+++... .+++|++|++++.+.+.+++ |.. .++|+.++.++....++..+.+.+..++++.+..++.
T Consensus 143 K~LEePp~---------~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~ 210 (620)
T PRK14948 143 KTLEEPPP---------RVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQ 210 (620)
T ss_pred HHHhcCCc---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 66665432 36777777778888888888 664 6889999999988888888888788899999999999
Q ss_pred hcCCCCHHHHHHHHHH
Q 001560 772 KCDGYDAYDLEILVDR 787 (1052)
Q Consensus 772 ~teG~s~~DL~~Lv~~ 787 (1052)
.+.| +.+++..++++
T Consensus 211 ~s~G-~lr~A~~lLek 225 (620)
T PRK14948 211 RSQG-GLRDAESLLDQ 225 (620)
T ss_pred HcCC-CHHHHHHHHHH
Confidence 9887 45666666654
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.8e-10 Score=136.29 Aligned_cols=116 Identities=24% Similarity=0.325 Sum_probs=91.2
Q ss_pred ccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh-------
Q 001560 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------- 915 (1052)
Q Consensus 843 ~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~------- 915 (1052)
-.|-.|++++|+++.+++...... +-....-++|+||||+|||++++.+|+.+|..|+.++..-+-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 356789999999999998742111 111224478999999999999999999999999999875443
Q ss_pred --hhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhh
Q 001560 916 --NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 966 (1052)
Q Consensus 916 --~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~ 966 (1052)
..|+|.....+-+...+|...+| ++++||||++..+-.++-.++.-+++.
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcC
Confidence 35999999999999999999999 899999999987644454555555553
No 180
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.2e-10 Score=124.54 Aligned_cols=119 Identities=23% Similarity=0.336 Sum_probs=85.1
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
+..+++.+|++++|+.+.-.+...... -...-|+|||||||.||||+|..+|+++|.++-..+++-+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le---- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE---- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc----
Confidence 467999999999999998777633211 12335899999999999999999999999999998887653
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeec
Q 001560 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWE 981 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~ 981 (1052)
....+..++.....+ +|||||||+.+.+. +..-+...|++.+..++|.-.-
T Consensus 90 --K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-------vEE~LYpaMEDf~lDI~IG~gp 140 (332)
T COG2255 90 --KPGDLAAILTNLEEG--DVLFIDEIHRLSPA-------VEEVLYPAMEDFRLDIIIGKGP 140 (332)
T ss_pred --ChhhHHHHHhcCCcC--CeEEEehhhhcChh-------HHHHhhhhhhheeEEEEEccCC
Confidence 334566666665443 59999999999652 2222334555555544443333
No 181
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.11 E-value=1.7e-09 Score=132.65 Aligned_cols=233 Identities=16% Similarity=0.221 Sum_probs=135.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc----ceeeEEEE
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~~~v~~v 627 (1052)
.+.++.|.+..+..+.+.+. .+.+.+++|+|||||||||+|+++++....... ....++.+
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia---------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVA---------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cHHhceeCcHHHHHHHHHHh---------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 45677888888877655431 122457999999999999999999887642111 12567888
Q ss_pred ecccccCCch-------hhH----HHHhhhhHHH----------hhccCCeEEEEeccchhccCCCCCCCCCCchhHHHH
Q 001560 628 CCSRLSLEKG-------PII----RQALSNFISE----------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (1052)
Q Consensus 628 ~~s~L~~~~~-------~~~----~~~l~~~f~~----------a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l 686 (1052)
+|..+..... +.. .+.....+.. ......++|||||++.|- .. .
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~----~ 281 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PL----L 281 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HH----H
Confidence 8876531100 000 0000011110 001235699999998872 12 2
Q ss_pred HHHHHHHHHHhc---------cccC----------CccCcCcEEEEE-ecCCCCCCchhhhcCCCcceeeeCCCCCHHHH
Q 001560 687 TKFLVDIMDEYG---------EKRK----------SSCGIGPIAFVA-SAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 746 (1052)
Q Consensus 687 ~~~L~~~ld~~~---------~~~~----------~~~~~~~V~vIa-ttn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR 746 (1052)
...|...++.-. .... .......+++|+ |++.++.+++++++ ||. .+.+++++.+++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi 358 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHH
Confidence 233333333210 0000 000112355555 55667889999988 887 678999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccccccc
Q 001560 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1052)
Q Consensus 747 ~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1052)
.+|++..+.+.+..++++.+..++..+. .++...+.+..++..+..+..... .......++.+|+.+++..
T Consensus 359 ~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~---~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 359 ALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAG---KENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhc---cCCCCeeECHHHHHHHhCC
Confidence 9999999987777788998888888764 344444444444322222211000 0112245777887777654
No 182
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.8e-09 Score=130.60 Aligned_cols=193 Identities=17% Similarity=0.214 Sum_probs=126.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|+++.|.+..++.+++.+.. . ..+..+||+||+|+|||++|+.+|+.+.+....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~----~----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAE----G----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHh----C----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 356778888777766554421 1 123457999999999999999999998643210
Q ss_pred --------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001560 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1052)
Q Consensus 621 --------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~ 692 (1052)
...++.++... ....+.++..+..+..........|+||||+|.|-. .-.+.|+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~--~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLLk 142 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS--HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALLK 142 (585)
T ss_pred HHHHhcCCCCeEEEEeccc--cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHHH
Confidence 01223333321 112333333332221111223456999999998831 22344555
Q ss_pred HHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhh
Q 001560 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1052)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~ 772 (1052)
.+++... .+++|.+++..+.+.+.+++ |+. .+.|+.++..+...+++..+...+..++++.+..++..
T Consensus 143 ~LEepp~---------~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~ 210 (585)
T PRK14950 143 TLEEPPP---------HAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARA 210 (585)
T ss_pred HHhcCCC---------CeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5665432 35666667777778788877 654 68899999999999999998888888999999999998
Q ss_pred cCCCCHHHHHHHHHHH
Q 001560 773 CDGYDAYDLEILVDRT 788 (1052)
Q Consensus 773 teG~s~~DL~~Lv~~A 788 (1052)
+.| +.+++...+++.
T Consensus 211 s~G-dlr~al~~LekL 225 (585)
T PRK14950 211 ATG-SMRDAENLLQQL 225 (585)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 887 777777777664
No 183
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=1.9e-09 Score=126.37 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=123.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.+.++.|.+..++.+.+.+. . ...+..+||+||||+|||++|+++|+.+.+....
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~----~----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLR----M----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred cHhhccChHHHHHHHHHHHH----h----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 35577787777665554332 1 1223459999999999999999999999753100
Q ss_pred ---------------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHH
Q 001560 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1052)
Q Consensus 621 ---------------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~ 685 (1052)
..++..++... ......++.....+-.........|+||||+|.+.. .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~--~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------~ 142 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAAS--NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------A 142 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccc--cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------H
Confidence 00122222211 111233333222221111122345999999998831 1
Q ss_pred HHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHH
Q 001560 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (1052)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~ 765 (1052)
-.+.|+..+++... ...+|.+++....+.+.+.+ |.. .+++++++.++..+.++..++..+..++++.
T Consensus 143 ~~~~LLk~LEep~~---------~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~a 210 (397)
T PRK14955 143 AFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADA 210 (397)
T ss_pred HHHHHHHHHhcCCC---------CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 23345555554322 35566666667788888877 655 7899999999999999998888888899999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 766 LLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 766 l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+..++..+.| +.+.+...++++.
T Consensus 211 l~~l~~~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 211 LQLIGRKAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999987 5666766666654
No 184
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.10 E-value=4.1e-11 Score=138.67 Aligned_cols=153 Identities=21% Similarity=0.296 Sum_probs=109.7
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhh-
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL- 915 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~- 915 (1052)
...+++|+|.+.....+.+.+... .+....+|+.|++||||..+|+++++.+ +.|||.+||+.+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 367899999998887777666532 3456789999999999999999999988 7899999997543
Q ss_pred ------------hhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccC
Q 001560 916 ------------NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVG 983 (1052)
Q Consensus 916 ------------~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~ 983 (1052)
+.|.|+....-..+|+.|..+ .||+|||..+.. .-+...-|++.+ ..
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl----~LQaKLLRVLQE---ke----------- 368 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPL----PLQAKLLRVLQE---KE----------- 368 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCH----HHHHHHHHHHhh---ce-----------
Confidence 235555544345788888777 999999999954 112223333332 00
Q ss_pred cccCccccchhhhhhhcccccchhHHHhhhhcCCccc-CCeEEEEeCCC------CCCCcceEEEecCCcccccc
Q 001560 984 KKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVL-TGVFVFAATRL------EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~-~~v~vi~aTn~------r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
...+.|.... -+|.||||||+ .-|||...+|+++....|.+
T Consensus 369 ---------------------------i~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~i 416 (560)
T COG3829 369 ---------------------------IERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITI 416 (560)
T ss_pred ---------------------------EEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecC
Confidence 0112222221 27999999999 99999999999998776643
No 185
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.09 E-value=1.6e-10 Score=126.26 Aligned_cols=95 Identities=26% Similarity=0.406 Sum_probs=79.7
Q ss_pred ceeEecCCCCchhhHHHHHHHHcCCe---EEEeechhhhhhhhcccHHHHHHHHHHHhc-----CCCEEEEEeCCCccCC
Q 001560 880 NVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 880 ~iLL~GppGtGKT~lA~alA~~~~~~---~i~v~~s~l~~~yvGese~~ir~lf~~A~~-----~~p~ILfiDEid~l~~ 951 (1052)
.++|.||||||||++|+.|+.....+ |+++++. ...-+.+|++|+.|+. +...|||||||+.+-
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN- 235 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN- 235 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-
Confidence 59999999999999999999988655 8888763 3556789999999854 345699999999983
Q ss_pred cCCCCCcccchhhhhccccccceeeeeeeccCcccCc
Q 001560 952 KRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGV 988 (1052)
Q Consensus 952 ~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~ 988 (1052)
...+|.++-.++++..++|.+++||+.++-.
T Consensus 236 ------ksQQD~fLP~VE~G~I~lIGATTENPSFqln 266 (554)
T KOG2028|consen 236 ------KSQQDTFLPHVENGDITLIGATTENPSFQLN 266 (554)
T ss_pred ------hhhhhcccceeccCceEEEecccCCCccchh
Confidence 3457778888999999999999999988765
No 186
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=2.8e-09 Score=129.73 Aligned_cols=194 Identities=17% Similarity=0.229 Sum_probs=126.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~----------- 620 (1052)
.|.++.|.+..++.+.+.+.. ...+.++||+||+|+||||+|+.+|+.+.+....
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~--------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRM--------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 356777887777766554321 1223459999999999999999999999763210
Q ss_pred ---------------eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHH
Q 001560 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1052)
Q Consensus 621 ---------------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~ 685 (1052)
..++..++... ....++++..+..+.........-|+||||+|.+.. .
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s--~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~ 142 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAAS--NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------A 142 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------H
Confidence 01122222211 112334444333332212223446999999998831 1
Q ss_pred HHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHH
Q 001560 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (1052)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~ 765 (1052)
-.+.|+..+++... .+++|.+++....+.+.+.+ |.. .++|.+++.++....+...+...+..++++.
T Consensus 143 a~naLLK~LEePp~---------~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~ea 210 (620)
T PRK14954 143 AFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADA 210 (620)
T ss_pred HHHHHHHHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 24456666666433 35566666777888888887 554 7999999999999999988888888899999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHH
Q 001560 766 LLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 766 l~~La~~teG~s~~DL~~Lv~~A~ 789 (1052)
+..++..+.| +.+++...+++.+
T Consensus 211 l~~La~~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 211 LQLIARKAQG-SMRDAQSILDQVI 233 (620)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHH
Confidence 9999999887 5666666555543
No 187
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.09 E-value=1e-09 Score=121.35 Aligned_cols=156 Identities=17% Similarity=0.244 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc------ccC
Q 001560 561 TTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSL 634 (1052)
Q Consensus 561 ~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~------L~~ 634 (1052)
..++++.+++...+.. +.++||+||||||||++|+++|+.++ ..+..++|.. +.+
T Consensus 5 ~~~~~l~~~~l~~l~~-------------g~~vLL~G~~GtGKT~lA~~la~~lg------~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS-------------GYPVHLRGPAGTGKTTLAMHVARKRD------RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHHHHHhc-------------CCeEEEEcCCCCCHHHHHHHHHHHhC------CCEEEEeCCccCCHHHHhh
Confidence 3566666666544332 36799999999999999999999876 5677777653 222
Q ss_pred CchhhH-HHHhhh-------------------hHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHH
Q 001560 635 EKGPII-RQALSN-------------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1052)
Q Consensus 635 ~~~~~~-~~~l~~-------------------~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~l 694 (1052)
.+.+.. ...... .+..|. ..+.+|+|||++.+-+ .....|...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~-~~g~~lllDEi~r~~~---------------~~q~~Ll~~L 129 (262)
T TIGR02640 66 SYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAV-REGFTLVYDEFTRSKP---------------ETNNVLLSVF 129 (262)
T ss_pred hhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHH-HcCCEEEEcchhhCCH---------------HHHHHHHHHh
Confidence 221110 111111 111121 2456999999998631 3344555555
Q ss_pred HHhc----ccc---CCccCcCcEEEEEecCCCC-----CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHH
Q 001560 695 DEYG----EKR---KSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1052)
Q Consensus 695 d~~~----~~~---~~~~~~~~V~vIattn~~~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l 754 (1052)
++.. ... .......++.+|+|+|... .+++++.+ ||. .+.++.|+.++-.+|++...
T Consensus 130 e~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 130 EEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 5321 000 0000123578999999753 56888998 885 78999999999999998754
No 188
>PRK09087 hypothetical protein; Validated
Probab=99.08 E-value=8.3e-10 Score=119.24 Aligned_cols=154 Identities=17% Similarity=0.228 Sum_probs=103.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
..++|+||+|+|||+|++++++..+ ..+++...+..... .... ..+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~~~~~~~~-----------~~~~---~~~l~iDDi~~~~~- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPNEIGSDAA-----------NAAA---EGPVLIEDIDAGGF- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHHHcchHHH-----------Hhhh---cCeEEEECCCCCCC-
Confidence 3499999999999999999998653 22555443222111 1111 14899999987620
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCC---chhhhcCCCcc--eeeeCCCCCHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRFD--FHVQLPAPAASE 745 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L---d~aL~r~gRF~--~~i~i~~Pd~~e 745 (1052)
. ...+.+.+....+ .+ ..++++++..+..+ .+.+++ |+. ..+++++|+.++
T Consensus 102 --------~---~~~lf~l~n~~~~----~g-------~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 102 --------D---ETGLFHLINSVRQ----AG-------TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDAL 157 (226)
T ss_pred --------C---HHHHHHHHHHHHh----CC-------CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHH
Confidence 0 1134443333322 11 24566665555433 577888 664 689999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 001560 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1052)
Q Consensus 746 R~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a 792 (1052)
|.+|+++.++.+++.++++++..|+++..+ +.+.+..++++....+
T Consensus 158 ~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~ 203 (226)
T PRK09087 158 LSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLA 203 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999886 5556665555554333
No 189
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4e-10 Score=132.46 Aligned_cols=102 Identities=25% Similarity=0.391 Sum_probs=84.0
Q ss_pred CccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh------
Q 001560 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------ 915 (1052)
Q Consensus 842 ~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~------ 915 (1052)
.-+|-.|++++|+++.+++.... -.|...+.-++|+||||+|||++|+.+|+.++..|++++..-+.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhc
Confidence 34577899999999999987421 11233445588999999999999999999999999998765443
Q ss_pred ---hhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 916 ---NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 916 ---~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
..|+|.....+-+.+....-.+| +++|||+|++..
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~ 519 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS 519 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC
Confidence 35999999999999999988888 899999999983
No 190
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.07 E-value=1.9e-09 Score=123.63 Aligned_cols=195 Identities=18% Similarity=0.274 Sum_probs=137.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
..++||||.|+|||+|+++++.+..... ....++++..+.+........+..-.+-|.+-+ .-.+|+|||++.+.++
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~-~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANG-PNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhC-CCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4599999999999999999999876433 225678888777665555554443344455554 4569999999998642
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCC---chhhhcCCCcc--eeeeCCCCCHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRFD--FHVQLPAPAASE 745 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L---d~aL~r~gRF~--~~i~i~~Pd~~e 745 (1052)
. .....+...|..+.+. + .-+++.+...|..+ .+.|++ ||. ..+.+.+|+.+.
T Consensus 191 ~---------~~qeefFh~FN~l~~~----~-------kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 191 E---------RTQEEFFHTFNALLEN----G-------KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDET 248 (408)
T ss_pred h---------hHHHHHHHHHHHHHhc----C-------CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHH
Confidence 1 1123555555554433 1 24556665666655 488888 666 567999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccccccc
Q 001560 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 746 R~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1052)
|.+||+...+..++.++++++..++..... +.++|+.++++....+.... ..+|.+...++++..
T Consensus 249 r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~------------~~iTi~~v~e~L~~~ 313 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTK------------RAITIDLVKEILKDL 313 (408)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcC------------ccCcHHHHHHHHHHh
Confidence 999999999999999999999999998776 67888888877765554331 245655555555543
No 191
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.06 E-value=5.7e-09 Score=133.13 Aligned_cols=218 Identities=19% Similarity=0.215 Sum_probs=141.5
Q ss_pred cccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 001560 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1052)
Q Consensus 554 ~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~ 633 (1052)
..+.|.+.+++.+.+.+....... .....|...+||+||+|||||++|+++|+.+.... ..++.++|+.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl------~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~---~~~i~~d~s~~~ 635 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL------SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE---DAMVRIDMSEYM 635 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC------CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhhc
Confidence 357889999999988886442110 00012345699999999999999999999875332 467788887654
Q ss_pred CCchhh-H--------HH-HhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 001560 634 LEKGPI-I--------RQ-ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (1052)
Q Consensus 634 ~~~~~~-~--------~~-~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (1052)
...... . .- .-..+......+..+||||||++.+-+ .+.+.|+..++.-. ...
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred ccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCC
Confidence 322100 0 00 001112222334457999999998732 44566666665432 111
Q ss_pred CCccCcCcEEEEEecCCCCC-------------------------CchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhh
Q 001560 702 KSSCGIGPIAFVASAQSLEK-------------------------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (1052)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~-------------------------Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~ 756 (1052)
.......+.++|+|+|.... +.|.|.. |++.++.|.+++.++..+|+...+..
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 11122235778899886211 2344554 99999999999999999998866542
Q ss_pred -------c--cCCCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHHHHHhhhc
Q 001560 757 -------R--SLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYL 797 (1052)
Q Consensus 757 -------~--~~~~sd~~l~~La~~te--G~s~~DL~~Lv~~A~~~a~~r~~ 797 (1052)
. .+.++++++..|+.... .+.++.|++++++.+...+.+.+
T Consensus 779 l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 779 LRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 2 25688999999998743 67889999999999877776654
No 192
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.06 E-value=4.2e-11 Score=123.21 Aligned_cols=145 Identities=21% Similarity=0.332 Sum_probs=91.0
Q ss_pred cccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh-----h
Q 001560 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-----K 917 (1052)
Q Consensus 846 i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~-----~ 917 (1052)
|+|.+...+.+.+.+... ...+.++|++|++||||+++|+++++.. +.||+.++|+.+-. .
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 345555555555555432 1234679999999999999999999987 57999999986542 2
Q ss_pred hhcccH-------HHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccc
Q 001560 918 YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVP 990 (1052)
Q Consensus 918 yvGese-------~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~ 990 (1052)
.+|... ..-..+|+.|..+ +||||||+.|.+ ..+.++++-|++..+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~-------~~Q~~Ll~~l~~~~~----------------- 122 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPP-------ELQAKLLRVLEEGKF----------------- 122 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-H-------HHHHHHHHHHHHSEE-----------------
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhhHH-------HHHHHHHHHHhhchh-----------------
Confidence 344321 1124788998777 999999999965 233343333221111
Q ss_pred cchhhhhhhcccccchhHHHhhhhcCCc-ccCCeEEEEeCCC------CCCCcceEEEecCCcccc
Q 001560 991 YDIYILVNFLISACPCFQQFLTELDGVE-VLTGVFVFAATRL------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~lL~~ldg~~-~~~~v~vi~aTn~------r~gRfd~~i~~~~p~~~~ 1049 (1052)
+.+.+-. ..-++.+|+||+. ..|+|...+|+.+-.+.|
T Consensus 123 ---------------------~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~~i 167 (168)
T PF00158_consen 123 ---------------------TRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVFTI 167 (168)
T ss_dssp ---------------------ECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTEEE
T ss_pred ---------------------ccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceEec
Confidence 1111111 1237999999998 789999999998877765
No 193
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.06 E-value=1.4e-09 Score=121.60 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=91.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc------ccCCchhhHH------HHhhhhHHHhhccCCe
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKGPIIR------QALSNFISEALDHAPS 657 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~------L~~~~~~~~~------~~l~~~f~~a~~~~Ps 657 (1052)
++++||.|+||||||++++.+|+.++ .+++.++|.. +.|...-..+ ......+-.|. ..+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~------~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~ 136 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN------WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNV 136 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC------CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCe
Confidence 46799999999999999999999998 5556666543 3433211110 00111222222 3567
Q ss_pred EEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH-----hccccCCccCcCcEEEEEecCCCC------------
Q 001560 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE-----YGEKRKSSCGIGPIAFVASAQSLE------------ 720 (1052)
Q Consensus 658 IL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~-----~~~~~~~~~~~~~V~vIattn~~~------------ 720 (1052)
+|++||+|..-+ .....|...++. +..........+.+.+|||+|..+
T Consensus 137 illlDEin~a~p---------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~ 201 (327)
T TIGR01650 137 ALCFDEYDAGRP---------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQ 201 (327)
T ss_pred EEEechhhccCH---------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeee
Confidence 899999998632 233444444442 111111122234689999999854
Q ss_pred CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHH
Q 001560 721 KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1052)
Q Consensus 721 ~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l 754 (1052)
.++++++. ||...+.+..|+.++-.+|+....
T Consensus 202 ~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 202 QINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred cCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 35788888 998888999999999999987654
No 194
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=6.4e-09 Score=127.29 Aligned_cols=194 Identities=19% Similarity=0.181 Sum_probs=131.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------ 619 (1052)
.|+++.|.+...+.+.+.+.. ...+..+|||||+|+|||++|+.+|+.+.+...
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~--------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIAT--------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 456778888777777665531 112345899999999999999999999864211
Q ss_pred -------ceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001560 620 -------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1052)
Q Consensus 620 -------~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~ 692 (1052)
....+..+++.+ ......++..+..+-........-|++|||+|.+-. .-.+.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~--~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS--NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHH
Confidence 012344444432 112333443332221111122345999999998831 23455667
Q ss_pred HHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhh
Q 001560 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1052)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~ 772 (1052)
.+++... ..++|.+++....+.+.+++ |.. .++|++++.++....++..+.+.++.++++.+..++..
T Consensus 144 ~LEepp~---------~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~ 211 (614)
T PRK14971 144 TLEEPPS---------YAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQK 211 (614)
T ss_pred HHhCCCC---------CeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7776543 35666677777888888888 654 69999999999999999999988999999999999998
Q ss_pred cCCCCHHHHHHHHHHHH
Q 001560 773 CDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 773 teG~s~~DL~~Lv~~A~ 789 (1052)
+.| +.+++..++++.+
T Consensus 212 s~g-dlr~al~~Lekl~ 227 (614)
T PRK14971 212 ADG-GMRDALSIFDQVV 227 (614)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 876 6777766666643
No 195
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.02 E-value=1.4e-10 Score=132.42 Aligned_cols=149 Identities=22% Similarity=0.263 Sum_probs=106.7
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh-
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN- 916 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~- 916 (1052)
.....|+|.+.....+.+.++.. .....+||+.|++||||..+||+|++.+ ..||+.+||+.+-.
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 45678999999988888888754 2455789999999999999999999998 67999999976642
Q ss_pred ----hhhcccH-------HHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcc
Q 001560 917 ----KYIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKK 985 (1052)
Q Consensus 917 ----~yvGese-------~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~ 985 (1052)
..+|.-. ..-+.-|+.|.++ .||+|||..+.. .-+...-|++..
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelPL----~lQaKLLRvLQe------------------ 343 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELPL----ALQAKLLRVLQE------------------ 343 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCCH----HHHHHHHHHHhh------------------
Confidence 2222211 1123556666555 999999999965 122223344433
Q ss_pred cCccccchhhhhhhcccccchhHHHhhhhcCCcccC----CeEEEEeCCC------CCCCcceEEEecCCcccccc
Q 001560 986 EGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLT----GVFVFAATRL------EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~----~v~vi~aTn~------r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
.+++.+.+.+ +|.||||||| +-|+|...+|+++..|.|.|
T Consensus 344 --------------------------gEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~l 393 (550)
T COG3604 344 --------------------------GEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLEL 393 (550)
T ss_pred --------------------------cceeecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCC
Confidence 1222222221 6999999999 99999999999999888764
No 196
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.02 E-value=7.6e-10 Score=138.66 Aligned_cols=101 Identities=25% Similarity=0.409 Sum_probs=78.7
Q ss_pred cccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh--------
Q 001560 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------- 915 (1052)
Q Consensus 844 ~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~-------- 915 (1052)
.+..|++.+|+.+.+++...... +-.....++|+||||||||++|+.+|+.++.+|+.++.+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 45889999999998877732111 112334699999999999999999999999999988765432
Q ss_pred -hhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 916 -NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 916 -~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
..|+|.....+.+.+..+....| |+||||+|++.++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~ 431 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSD 431 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccc
Confidence 35888887778788887765555 8999999999765
No 197
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.01 E-value=1.5e-08 Score=106.23 Aligned_cols=195 Identities=20% Similarity=0.237 Sum_probs=135.3
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s 630 (1052)
..+..|.|++.+.+.+.+....++. ..+..+|||+|..|||||+|+||+-.++..... ..+.|+.+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~-----------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl---rLVEV~k~ 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE-----------GLPANNVLLWGARGTGKSSLVKALLNEYADEGL---RLVEVDKE 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc-----------CCcccceEEecCCCCChHHHHHHHHHHHHhcCC---eEEEEcHH
Confidence 4567889999999988887766653 344567999999999999999999999874432 36677766
Q ss_pred cccCCchhhHHHHhhhhHHHhhc-cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCc
Q 001560 631 RLSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
++.. +-.++...+. ...-|||+||+.- .++. .-...|...+++-.... ..+
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------e~gd-------~~yK~LKs~LeG~ve~r-----P~N 174 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSF-------EEGD-------DAYKALKSALEGGVEGR-----PAN 174 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCC-------CCCc-------hHHHHHHHHhcCCcccC-----CCe
Confidence 6542 2233333332 3457999999832 1111 22445666666543332 237
Q ss_pred EEEEEecCCCCCCchhhhc--------------------CCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHH-
Q 001560 710 IAFVASAQSLEKIPQSLTS--------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD- 768 (1052)
Q Consensus 710 V~vIattn~~~~Ld~aL~r--------------------~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~- 768 (1052)
|++.||+|+.+.++..+.. +.||...+.|++++.++-.+|+.++++..++..+++.+..
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~e 254 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAE 254 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999998766532221 2499999999999999999999999999999988766543
Q ss_pred ---HhhhcCCCCHHHHHHHHHH
Q 001560 769 ---VASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 769 ---La~~teG~s~~DL~~Lv~~ 787 (1052)
-|....|-+|+-...+++.
T Consensus 255 Al~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 255 ALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHHHHhcCCCccHhHHHHHHH
Confidence 3444566677655555543
No 198
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.01 E-value=1e-09 Score=125.54 Aligned_cols=96 Identities=28% Similarity=0.462 Sum_probs=71.7
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
+..|++++|.++.++.+...+..... .-.+..++||+||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 36899999999999999877753211 113346899999999999999999999999988877765432
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
....+..++... ..++||||||||.+..
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSP 116 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcch
Confidence 223455555554 3467999999999953
No 199
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.01 E-value=8.8e-09 Score=121.84 Aligned_cols=177 Identities=19% Similarity=0.316 Sum_probs=122.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHh----hccCCeEEEE
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIF 661 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a----~~~~PsIL~I 661 (1052)
+.|+.+-+|||||||-||||||+.+|+..+ ..++.+++++=. ....++.++..+.+.- ...+|.+|++
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaG------YsVvEINASDeR--t~~~v~~kI~~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAG------YSVVEINASDER--TAPMVKEKIENAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcC------ceEEEecccccc--cHHHHHHHHHHHHhhccccccCCCcceEEE
Confidence 456667799999999999999999999988 889999998843 3445555666555432 2367999999
Q ss_pred eccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH-----hccccCC-------ccCcCcEEEEEecCCCCCCchhhhcC
Q 001560 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE-----YGEKRKS-------SCGIGPIAFVASAQSLEKIPQSLTSS 729 (1052)
Q Consensus 662 DEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~-----~~~~~~~-------~~~~~~V~vIattn~~~~Ld~aL~r~ 729 (1052)
||||.-. . ...+.++.++.. ....... ....-.--||+.||+.. -|+|+.-
T Consensus 394 DEIDGa~-----------~----~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~L 456 (877)
T KOG1969|consen 394 DEIDGAP-----------R----AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPL 456 (877)
T ss_pred ecccCCc-----------H----HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhc
Confidence 9998542 1 233333333331 1111000 00000134788888654 3666655
Q ss_pred CCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 730 GRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 730 gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
.-|...+.|.+|......+-|+..+.+.++.++...+..|+..|++ |++..+......
T Consensus 457 r~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfL 514 (877)
T KOG1969|consen 457 RPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFL 514 (877)
T ss_pred ccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHH
Confidence 5788899999999999999999999989999999999999988776 777666554433
No 200
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.00 E-value=1.2e-09 Score=123.51 Aligned_cols=94 Identities=24% Similarity=0.415 Sum_probs=67.2
Q ss_pred CccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcc
Q 001560 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGA 921 (1052)
Q Consensus 842 ~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGe 921 (1052)
.|++++|++++++.+...+...... .....+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5889999999999998877522111 123457999999999999999999999998887766543221
Q ss_pred cHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 922 se~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
...+...+... ..+.+|||||++.+.+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSP 95 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCH
Confidence 11233333332 3456999999999964
No 201
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=2.8e-08 Score=110.20 Aligned_cols=195 Identities=19% Similarity=0.275 Sum_probs=115.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc------------ccc----CCchhhHHHHhhhhHH-Hhhc
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------------RLS----LEKGPIIRQALSNFIS-EALD 653 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s------------~L~----~~~~~~~~~~l~~~f~-~a~~ 653 (1052)
+.++|+||+|+||||+++.+++.+....... ...+++. .+. +.........+.+.+. ....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~--~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVA--AKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE--eeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4589999999999999999999876322111 1111111 010 0000111122222222 2334
Q ss_pred cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCC--CCCC----chhhh
Q 001560 654 HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKI----PQSLT 727 (1052)
Q Consensus 654 ~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~--~~~L----d~aL~ 727 (1052)
..+.+|+|||++.+-. ...+.+..+.+ ...... ..+.++.+... .+.+ ...+.
T Consensus 122 ~~~~vliiDe~~~l~~---------------~~~~~l~~l~~-~~~~~~-----~~~~vvl~g~~~~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 122 GKRALLVVDEAQNLTP---------------ELLEELRMLSN-FQTDNA-----KLLQIFLVGQPEFRETLQSPQLQQLR 180 (269)
T ss_pred CCCeEEEEECcccCCH---------------HHHHHHHHHhC-cccCCC-----CeEEEEEcCCHHHHHHHcCchhHHHH
Confidence 5678999999998731 11222222211 111100 12333443332 1111 12344
Q ss_pred cCCCcceeeeCCCCCHHHHHHHHHHHHhhcc----CCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCcc
Q 001560 728 SSGRFDFHVQLPAPAASERKAILEHEIQRRS----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (1052)
Q Consensus 728 r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~----~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~ 803 (1052)
+ |+...+++++.+.++..+++...+...+ ..++++.+..+++.+.|. ++.+..+++.+...+..+
T Consensus 181 ~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~-------- 249 (269)
T TIGR03015 181 Q--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLE-------- 249 (269)
T ss_pred h--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHc--------
Confidence 4 7777899999999999999998887543 358889999999999997 566999999998887665
Q ss_pred ccccccccccccccccccc
Q 001560 804 EKHIKPTLVRDDFSQAMHE 822 (1052)
Q Consensus 804 ~~~~~~~lt~eDf~~Al~~ 822 (1052)
+...++.+++..++..
T Consensus 250 ---~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 250 ---EKREIGGEEVREVIAE 265 (269)
T ss_pred ---CCCCCCHHHHHHHHHH
Confidence 2245777777766554
No 202
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.98 E-value=5.7e-10 Score=115.16 Aligned_cols=71 Identities=28% Similarity=0.449 Sum_probs=51.5
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCC----eEEEeechhhhhhhhcccHHHHHHHHH-------HHhcCCCEEEEEeC
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSL----RFISVKGPELLNKYIGASEQAVRDIFS-------KATAAAPCLLFFDE 945 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~----~~i~v~~s~l~~~yvGese~~ir~lf~-------~A~~~~p~ILfiDE 945 (1052)
|...+||+||+|||||.+|+++|+.+.. +++.++++++... ++.+..+..++. .+..+ ||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~g---VVllDE 76 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGG---VVLLDE 76 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHT---EEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchh---hhhhHH
Confidence 4567999999999999999999999996 9999999988651 111112222222 12222 999999
Q ss_pred CCccCCc
Q 001560 946 FDSIAPK 952 (1052)
Q Consensus 946 id~l~~~ 952 (1052)
||++.++
T Consensus 77 idKa~~~ 83 (171)
T PF07724_consen 77 IDKAHPS 83 (171)
T ss_dssp GGGCSHT
T ss_pred Hhhcccc
Confidence 9999986
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.7e-09 Score=126.24 Aligned_cols=218 Identities=17% Similarity=0.217 Sum_probs=144.1
Q ss_pred cccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 001560 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1052)
Q Consensus 554 ~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~ 633 (1052)
..+.|.+.+++.+.+.|+..-..- .. ...|-+.+||.||+|+|||.||++||..|..+. ...+.+|.+++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL-----~d-p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e---~aliR~DMSEy~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGL-----GD-PNRPIGSFLFLGPTGVGKTELAKALAEALFGDE---QALIRIDMSEYM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCC-----CC-CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC---ccceeechHHHH
Confidence 357789999999888885432110 00 123345699999999999999999999987433 457778876643
Q ss_pred ---------CCchhhHHHHhhhhHHHhhc-cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--c
Q 001560 634 ---------LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--R 701 (1052)
Q Consensus 634 ---------~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~--~ 701 (1052)
|...|.+----...+.++.. +..|||+|||+++.-| .+.+.|++.+|.-.-. .
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp---------------dV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP---------------DVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH---------------HHHHHHHHHhcCCeeecCC
Confidence 22222211000112233333 4458999999988642 6778888888853321 1
Q ss_pred CCccCcCcEEEEEecCCCC----------------------------CCchhhhcCCCcceeeeCCCCCHHHHHHHHHHH
Q 001560 702 KSSCGIGPIAFVASAQSLE----------------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 753 (1052)
Q Consensus 702 ~~~~~~~~V~vIattn~~~----------------------------~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~ 753 (1052)
+....-.+.++|+|+|--. .+.|.|+. |++.+|.|.+.+.+...+|+..+
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 1222234788999988411 12355555 99999999999999999998876
Q ss_pred Hhh-------c--cCCCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHHHHHhhhc
Q 001560 754 IQR-------R--SLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYL 797 (1052)
Q Consensus 754 l~~-------~--~~~~sd~~l~~La~~te--G~s~~DL~~Lv~~A~~~a~~r~~ 797 (1052)
+.+ + .+.++++....++..+. .|-++-|++++++-+...+.+.+
T Consensus 705 L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 705 LNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 652 2 34588888899988764 57778888888887766665543
No 204
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.98 E-value=7.5e-09 Score=108.68 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=97.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCcc------------------ceeeEEEEecccccCCchhhHHHHhhhhHHHh
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEA 651 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------------~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a 651 (1052)
+..+||+||+|+|||++|+.+++.+..... ....+..+....- ....+.++..+..+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-SIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-cCCHHHHHHHHHHHccCc
Confidence 456999999999999999999999864210 0011222222110 112233333232222211
Q ss_pred hccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCC
Q 001560 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1052)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gR 731 (1052)
......|++|||+|.+.. ...+.|+..+++... ...+|.+++.+..+.+++++ |
T Consensus 93 ~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~~~---------~~~~il~~~~~~~l~~~i~s--r 146 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE---------------AAANALLKTLEEPPP---------NTLFILITPSPEKLLPTIRS--R 146 (188)
T ss_pred ccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChHhChHHHHh--h
Confidence 223456999999999841 123345555555332 25566667777889999988 6
Q ss_pred cceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCC
Q 001560 732 FDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1052)
Q Consensus 732 F~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~ 776 (1052)
.. .+++++|+.++..++++.. + ++++.+..++..+.|.
T Consensus 147 ~~-~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 147 CQ-VLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred cE-EeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 64 8999999999998888764 3 6677888888888764
No 205
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.96 E-value=1.3e-08 Score=111.73 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=90.1
Q ss_pred CCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecC-----------CCCCCc
Q 001560 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ-----------SLEKIP 723 (1052)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn-----------~~~~Ld 723 (1052)
-|.||||||+|.|- - ....+|.+.|+.--. +++++||-. .|+.+|
T Consensus 291 VpGVLFIDEvHmLD-----I----------E~FsFlnrAlEse~a---------PIii~AtNRG~~kiRGTd~~sPhGIP 346 (450)
T COG1224 291 VPGVLFIDEVHMLD-----I----------ECFSFLNRALESELA---------PIIILATNRGMTKIRGTDIESPHGIP 346 (450)
T ss_pred ecceEEEechhhhh-----H----------HHHHHHHHHhhcccC---------cEEEEEcCCceeeecccCCcCCCCCC
Confidence 48899999998872 1 445667666664221 455554422 256778
Q ss_pred hhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCcc
Q 001560 724 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (1052)
Q Consensus 724 ~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~ 803 (1052)
..|+. |.- .+...+++.++..+|++...+..++.++++.++.|+..-..-+-+---.|+.-|...|..|
T Consensus 347 ~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r-------- 415 (450)
T COG1224 347 LDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR-------- 415 (450)
T ss_pred Hhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh--------
Confidence 88777 654 6788999999999999999998899999999999998876655554445555444444444
Q ss_pred cccccccccccccccccccc
Q 001560 804 EKHIKPTLVRDDFSQAMHEF 823 (1052)
Q Consensus 804 ~~~~~~~lt~eDf~~Al~~~ 823 (1052)
....+..+|.+.|-.-|
T Consensus 416 ---g~~~V~~~dVe~a~~lF 432 (450)
T COG1224 416 ---GSKRVEVEDVERAKELF 432 (450)
T ss_pred ---CCCeeehhHHHHHHHHH
Confidence 22456777777665544
No 206
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=2e-09 Score=126.02 Aligned_cols=93 Identities=15% Similarity=0.259 Sum_probs=66.9
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe--------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------------- 905 (1052)
+..|++++|++.+.+.|+..+... +.+..+||+||+|||||++|+++|+.++..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 478999999999999998877621 223348999999999999999999998652
Q ss_pred ----------EEEeechhhhhhhhcccHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 ----------~i~v~~s~l~~~yvGese~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
+++++++. ...-..+|++.+.+. .+...|+||||+|.+.
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls 134 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT 134 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC
Confidence 33333321 112345666665543 3456799999999994
No 207
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.95 E-value=1.1e-08 Score=100.74 Aligned_cols=127 Identities=22% Similarity=0.389 Sum_probs=78.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHH---hhhhHHHhhccCCeEEEEeccch
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQA---LSNFISEALDHAPSIVIFDNLDS 666 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~---l~~~f~~a~~~~PsIL~IDEiD~ 666 (1052)
+.+++++||||||||++++.+++.+.... ..+.++++.............. ............+.+|+|||++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPG---APFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCC---CCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhh
Confidence 46799999999999999999999984211 5678888877654332221111 11222333446788999999998
Q ss_pred hccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCC--CCchhhhcCCCcceeeeCC
Q 001560 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDFHVQLP 739 (1052)
Q Consensus 667 L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~--~Ld~aL~r~gRF~~~i~i~ 739 (1052)
+.. .....+...+....... .....+.+|++++... .+++.+.+ ||+.++.++
T Consensus 96 ~~~---------------~~~~~~~~~i~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 96 LSR---------------GAQNALLRVLETLNDLR---IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hhH---------------HHHHHHHHHHHhcCcee---ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 721 11223333333332110 0012478888888776 67777777 887777775
No 208
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.94 E-value=3.6e-09 Score=124.68 Aligned_cols=91 Identities=27% Similarity=0.484 Sum_probs=70.0
Q ss_pred CCCccccccchhHHHH---HHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhh
Q 001560 840 RSGWDDVGGLTDIQNA---IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~---l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~ 916 (1052)
+..+++++|++++... +...+.. ....+++|+||||||||++|+++|+.++.+|+.+++..
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~--- 71 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT--- 71 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc---
Confidence 3678899999988555 7766642 12247999999999999999999999999999998753
Q ss_pred hhhcccHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 917 KYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 917 ~yvGese~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
.+...++.+++.+. .+...||||||+|.+.
T Consensus 72 ----~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~ 105 (413)
T PRK13342 72 ----SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFN 105 (413)
T ss_pred ----ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhC
Confidence 22345677777663 3356799999999984
No 209
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.93 E-value=1.3e-08 Score=115.96 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=120.5
Q ss_pred ccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCc
Q 001560 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK 636 (1052)
Q Consensus 557 ~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~ 636 (1052)
.|.+..+..+.+.+..+.... .+|||+|++||||+++|+++...... ...+++.++|..+....
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~-------------~pVLI~GE~GtGK~~lAr~iH~~s~r---~~~pfv~vnc~~~~~~~ 65 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLD-------------RPVLIIGERGTGKELIAARLHYLSKR---WQGPLVKLNCAALSENL 65 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCChHHHHHHHHHHhcCc---cCCCeEEEeCCCCChHH
Confidence 467778888888887664333 67999999999999999999876432 22688999998765321
Q ss_pred hhh-HHHHh-----------hhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cccC
Q 001560 637 GPI-IRQAL-----------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRK 702 (1052)
Q Consensus 637 ~~~-~~~~l-----------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~--~~~~ 702 (1052)
.+. +-... ..+|.. ...++|||||++.|- . .+...|.+.++.-. ..+.
T Consensus 66 l~~~lfG~~~g~~~ga~~~~~G~~~~---a~gGtL~Ldei~~L~-----------~----~~Q~~Ll~~l~~~~~~~~g~ 127 (329)
T TIGR02974 66 LDSELFGHEAGAFTGAQKRHQGRFER---ADGGTLFLDELATAS-----------L----LVQEKLLRVIEYGEFERVGG 127 (329)
T ss_pred HHHHHhccccccccCcccccCCchhh---CCCCEEEeCChHhCC-----------H----HHHHHHHHHHHcCcEEecCC
Confidence 111 00000 011222 245799999999983 1 23334444444321 1011
Q ss_pred CccCcCcEEEEEecCCC-------CCCchhhhcCCCcc-eeeeCCCCC--HHHHHHHHHHHHhh----cc----CCCCHH
Q 001560 703 SSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQR----RS----LECSDE 764 (1052)
Q Consensus 703 ~~~~~~~V~vIattn~~-------~~Ld~aL~r~gRF~-~~i~i~~Pd--~~eR~~IL~~~l~~----~~----~~~sd~ 764 (1052)
......++.+|++++.. ..+.+.|.. |+. ..|.+|+.. .++...++++++.+ .+ ..++++
T Consensus 128 ~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~ 205 (329)
T TIGR02974 128 SQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ 205 (329)
T ss_pred CceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH
Confidence 11112357888888752 234455554 554 234555443 23344455555432 12 358899
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 001560 765 ILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1052)
Q Consensus 765 ~l~~La~~teG~s~~DL~~Lv~~A~~~a 792 (1052)
.+..|..+..--+-++|++++++++..+
T Consensus 206 a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 206 AREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 9999988875558899999999887543
No 210
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.93 E-value=1.3e-08 Score=126.21 Aligned_cols=137 Identities=22% Similarity=0.255 Sum_probs=83.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc------ccCCc-----hhhHHHHhhh-hHHHhhccCCe
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEK-----GPIIRQALSN-FISEALDHAPS 657 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~------L~~~~-----~~~~~~~l~~-~f~~a~~~~Ps 657 (1052)
.+++||.|.||+|||+|+.++|++.+ ...+.++.++ |.|.+ .|+.. .++ -|-.| .....
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG------~kliRINLSeQTdL~DLfGsd~Pve~~Gef~--w~dapfL~a-mr~G~ 1613 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTG------KKLIRINLSEQTDLCDLFGSDLPVEEGGEFR--WMDAPFLHA-MRDGG 1613 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhc------CceEEeeccccchHHHHhCCCCCcccCceeE--ecccHHHHH-hhcCC
Confidence 46799999999999999999999988 4555665443 22222 22211 111 11122 23457
Q ss_pred EEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----cc-CCccCcCcEEEEEecCCCC------CCchhh
Q 001560 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KR-KSSCGIGPIAFVASAQSLE------KIPQSL 726 (1052)
Q Consensus 658 IL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~----~~-~~~~~~~~V~vIattn~~~------~Ld~aL 726 (1052)
.+++||+.... +.+++-|...+|..+. .. ......++..|+|+-|+.+ .+|..+
T Consensus 1614 WVlLDEiNLaS---------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1614 WVLLDEINLAS---------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred EEEeehhhhhH---------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHH
Confidence 99999995431 2455666666664332 11 1122234677777777643 688888
Q ss_pred hcCCCcceeeeCCCCCHHHHHHHHHHH
Q 001560 727 TSSGRFDFHVQLPAPAASERKAILEHE 753 (1052)
Q Consensus 727 ~r~gRF~~~i~i~~Pd~~eR~~IL~~~ 753 (1052)
.. ||. ++.+...+.+....|..++
T Consensus 1679 ~n--RFs-vV~~d~lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1679 LN--RFS-VVKMDGLTTDDITHIANKM 1702 (4600)
T ss_pred hh--hhh-eEEecccccchHHHHHHhh
Confidence 88 998 5666666666666665544
No 211
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=2.2e-09 Score=128.50 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=68.7
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC--------------
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------- 904 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~-------------- 904 (1052)
.+..|++++|++++++.|++.+... +.+..+||+||+|||||++|+.+|+.+.+
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 3478999999999999999888731 23345799999999999999999998865
Q ss_pred ---------------eEEEeechhhhhhhhcccHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 905 ---------------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ---------------~~i~v~~s~l~~~yvGese~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
.+++++... ..+-..+|++.+.+. .+..+|+||||+|.|.
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls 137 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT 137 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC
Confidence 233333321 112345677776653 3456799999999994
No 212
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.90 E-value=3e-08 Score=113.16 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=123.5
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccc
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L 632 (1052)
+.++.|.+..+..+++.+..+... +.+|||+|++||||+++|+++...... ...+++.++|..+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~-------------~~pVlI~GE~GtGK~~lA~~iH~~s~r---~~~pfv~v~c~~~ 68 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL-------------DKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAAL 68 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCCcHHHHHHHHHHhCCc---cCCCeEEEeCCCC
Confidence 346788999999999999776533 367999999999999999999865332 2267899999986
Q ss_pred cCCchhhHHHHh---------------hhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001560 633 SLEKGPIIRQAL---------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1052)
Q Consensus 633 ~~~~~~~~~~~l---------------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~ 697 (1052)
.... +...+ ...+.. ...+.|||||+|.|-. .+...|.+.++.-
T Consensus 69 ~~~~---~~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~---------------~~Q~~L~~~l~~~ 127 (326)
T PRK11608 69 NENL---LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM---------------LVQEKLLRVIEYG 127 (326)
T ss_pred CHHH---HHHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCH---------------HHHHHHHHHHhcC
Confidence 4221 11111 111222 3457899999999841 2334444444431
Q ss_pred c--cccCCccCcCcEEEEEecCCC-------CCCchhhhcCCCcc-eeeeCCCCCH--HHHHHHHHHHHhh----cc---
Q 001560 698 G--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS--- 758 (1052)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~r~gRF~-~~i~i~~Pd~--~eR~~IL~~~l~~----~~--- 758 (1052)
. ..+........+.+|++++.. ..+.+.|.. ||. ..|.+|+... ++...++.+++.. .+
T Consensus 128 ~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~ 205 (326)
T PRK11608 128 ELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPL 205 (326)
T ss_pred cEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 1 100000111247888887652 234455555 663 3455555432 2334455555432 22
Q ss_pred -CCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 759 -LECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 759 -~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
..++++.+..|..+.---+-++|++++++++..
T Consensus 206 ~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 206 FPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 347889999988887656889999999998753
No 213
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.90 E-value=1.2e-09 Score=118.21 Aligned_cols=122 Identities=25% Similarity=0.418 Sum_probs=87.0
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC------eEEEeech
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------RFISVKGP 912 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~------~~i~v~~s 912 (1052)
.+..++++.|++.+.+.|+..+.. +...++|||||||||||+.|+++|+++.. .+.+.+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 356899999999999999988862 33357999999999999999999999854 23445666
Q ss_pred hhhhhhhcccHHHHHHHHHHHhc------CCC----EEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeee
Q 001560 913 ELLNKYIGASEQAVRDIFSKATA------AAP----CLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFW 980 (1052)
Q Consensus 913 ~l~~~yvGese~~ir~lf~~A~~------~~p----~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~ 980 (1052)
+..+.-++.. ++ .-|+.... +.| .|++|||+|++.. +.+.+..|++.....+++|+.|+-|
T Consensus 98 derGisvvr~--Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts----daq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 98 DERGISVVRE--KI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS----DAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred ccccccchhh--hh-cCHHHHhhccccccCCCCCcceEEEEechhhhhH----HHHHHHHHHHhccccceEEEEEcCC
Confidence 5544332211 11 12222222 222 5999999999975 5667788888887778888888776
No 214
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=5.2e-09 Score=121.53 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe---------------
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~--------------- 905 (1052)
..|++|+|++.+++.|++.+.....+... .+.+.+..+||+||||+|||++|+++|+.+...
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~---~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAA---AGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccccc---cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 46899999999999999999865433222 233345679999999999999999999876332
Q ss_pred --------EEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccc
Q 001560 906 --------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSY 973 (1052)
Q Consensus 906 --------~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~ 973 (1052)
+..+... +.. -.-..+|++++.+.. +...|+||||+|.+... ..|.
T Consensus 79 ~~~~~hpD~~~i~~~---~~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aana------ 136 (394)
T PRK07940 79 VLAGTHPDVRVVAPE---GLS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANA------ 136 (394)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHH------
Confidence 1112111 011 122458888887754 34569999999999431 1233
Q ss_pred eeeeeeeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC------CCCCcceEEEecCCcc
Q 001560 974 LFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL------EFFHYNVLLFCSFIIF 1047 (1052)
Q Consensus 974 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~------r~gRfd~~i~~~~p~~ 1047 (1052)
||..|+.- +...++|++|||. ..+|. ..++|+.|+.
T Consensus 137 ------------------------------------LLk~LEep-~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~ 178 (394)
T PRK07940 137 ------------------------------------LLKAVEEP-PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSV 178 (394)
T ss_pred ------------------------------------HHHHhhcC-CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCH
Confidence 77777642 3345677777776 33454 6888888876
Q ss_pred cc
Q 001560 1048 LI 1049 (1052)
Q Consensus 1048 ~~ 1049 (1052)
+.
T Consensus 179 ~~ 180 (394)
T PRK07940 179 EA 180 (394)
T ss_pred HH
Confidence 53
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.89 E-value=1.1e-08 Score=100.74 Aligned_cols=73 Identities=40% Similarity=0.614 Sum_probs=54.5
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcccHHH---HHHHHHHHhcCCCEEEEEeCCCcc
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQA---VRDIFSKATAAAPCLLFFDEFDSI 949 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGese~~---ir~lf~~A~~~~p~ILfiDEid~l 949 (1052)
...+++++||||||||++++.++..+ +.+++.+++.+....+....... ....+..+....+.+|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 34579999999999999999999998 88999999887765433322211 122334445567889999999998
No 216
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=4.6e-09 Score=127.17 Aligned_cols=94 Identities=17% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC--------------
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------- 904 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~-------------- 904 (1052)
.+..|++++|++++++.|+..+.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 347899999999999999988762 123345799999999999999999998854
Q ss_pred ----------eEEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ----------~~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
.+++++..+ ..+-..+|++++.+.. +...|+||||+|.|.
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT 132 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT 132 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC
Confidence 233443321 1223457777777642 345799999999994
No 217
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.1e-09 Score=114.09 Aligned_cols=106 Identities=24% Similarity=0.406 Sum_probs=73.7
Q ss_pred cccchhHHHHHHHHhhcccCChhhhhcCC---c-ccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh-hhhhc
Q 001560 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAP---L-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIG 920 (1052)
Q Consensus 846 i~g~~~vk~~l~~~i~~~~~~~~~~~~~~---~-~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~-~~yvG 920 (1052)
++|++..|+.|.-.+. .+|.++..... + -..+++||.||+|||||.||+.||+.++.||-.-++..|. ..|+|
T Consensus 63 VIGQe~AKKvLsVAVY--NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVY--NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeeh--hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 5666666665542222 12222221111 1 2357899999999999999999999999999999998887 57999
Q ss_pred ccHHH-HHHHHHHH----hcCCCEEEEEeCCCccCCcC
Q 001560 921 ASEQA-VRDIFSKA----TAAAPCLLFFDEFDSIAPKR 953 (1052)
Q Consensus 921 ese~~-ir~lf~~A----~~~~p~ILfiDEid~l~~~r 953 (1052)
+.-.+ +-++++.| .++...|+||||||+++.+.
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkS 178 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKS 178 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC
Confidence 98655 44555443 12234499999999998654
No 218
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=7.9e-09 Score=122.75 Aligned_cols=93 Identities=16% Similarity=0.268 Sum_probs=68.0
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..+++++|++++.+.|+..+... +.+..+||+||||||||++|+++|+.++.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 468999999999999988876631 23445899999999999999999998754
Q ss_pred ---------eEEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ---------~~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
.++.++++. ...-..+|++.+.+.. +...|+||||+|.+.
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt 130 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT 130 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH
Confidence 355555432 1223456776666543 234699999999984
No 219
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.87 E-value=1.3e-09 Score=121.89 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=55.8
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhh--hhcccHHH----------HHHHHHHHhcCCCEEEEEe
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQA----------VRDIFSKATAAAPCLLFFD 944 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~--yvGese~~----------ir~lf~~A~~~~p~ILfiD 944 (1052)
.++++||.||||||||++|+.+|+.++.+++.+++...+.. ++|...-. ....+..|.. .+++|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 35689999999999999999999999999999988766654 45543211 1234445533 46789999
Q ss_pred CCCccCC
Q 001560 945 EFDSIAP 951 (1052)
Q Consensus 945 Eid~l~~ 951 (1052)
|+|..-+
T Consensus 142 Ein~a~p 148 (327)
T TIGR01650 142 EYDAGRP 148 (327)
T ss_pred hhhccCH
Confidence 9998854
No 220
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.87 E-value=5.5e-09 Score=115.57 Aligned_cols=73 Identities=29% Similarity=0.444 Sum_probs=51.3
Q ss_pred CCceeEecCCCCchhhHHHHHHHHcCCeEEEeech------hhhhhhhcccHHHHHH--------------------HHH
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP------ELLNKYIGASEQAVRD--------------------IFS 931 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s------~l~~~yvGese~~ir~--------------------lf~ 931 (1052)
+.++||+||||||||++|+++|+.+|.+++.+++. ++++.|.|...+.+.+ .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 46799999999999999999999999999998764 5555555433222111 112
Q ss_pred HHhcCCCEEEEEeCCCccCC
Q 001560 932 KATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 932 ~A~~~~p~ILfiDEid~l~~ 951 (1052)
.|.. .+.+|+|||++.+-+
T Consensus 101 ~A~~-~g~~lllDEi~r~~~ 119 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKP 119 (262)
T ss_pred HHHH-cCCEEEEcchhhCCH
Confidence 2222 235999999999844
No 221
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.87 E-value=9.7e-10 Score=127.78 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=105.6
Q ss_pred CccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhh---
Q 001560 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL--- 915 (1052)
Q Consensus 842 ~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~--- 915 (1052)
...+++|.+...+.+++.+... .....++|++|++||||..+|++|+... +.||+.+||..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4567889888888888877632 2345679999999999999999999988 5699999997653
Q ss_pred --hhhhcccH-------HHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCccc
Q 001560 916 --NKYIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKE 986 (1052)
Q Consensus 916 --~~yvGese-------~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~ 986 (1052)
+..+|... ..-...|+.|.++ +||+|||..+.. +-+...-|++.+ +.
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl----~~Q~kLLRvLqe---~~-------------- 263 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPL----ELQVKLLRVLQE---RE-------------- 263 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCH----HHHHHHHHHHHc---Ce--------------
Confidence 22333222 1123578888666 999999999954 122223333332 11
Q ss_pred CccccchhhhhhhcccccchhHHHhhhhcCCccc-CCeEEEEeCCC------CCCCcceEEEecCCcccccc
Q 001560 987 GVVPYDIYILVNFLISACPCFQQFLTELDGVEVL-TGVFVFAATRL------EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~-~~v~vi~aTn~------r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
.+.+.|-... -+|.||+|||+ .-|||...+|++|..+.|.+
T Consensus 264 ------------------------~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~i 311 (464)
T COG2204 264 ------------------------FERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRL 311 (464)
T ss_pred ------------------------eEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecC
Confidence 1222222221 27999999999 89999999999998887754
No 222
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.86 E-value=2e-08 Score=104.35 Aligned_cols=156 Identities=20% Similarity=0.287 Sum_probs=104.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhc---cCCeEEEEeccchh
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD---HAPSIVIFDNLDSI 667 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~---~~PsIL~IDEiD~L 667 (1052)
.+++|.||||+||||-+.++|++|- +......+..+++++-.| ....+..++..-+.-.. ...-|+++||+|++
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 3599999999999999999999974 211113356677766443 33445555443332221 22349999999998
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHH
Q 001560 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1052)
Q Consensus 668 ~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~ 747 (1052)
.. .-.+.|.+.|+-+... ..+..+||..+.+-+.+.+ |.. .+.+...+..+..
T Consensus 126 T~---------------gAQQAlRRtMEiyS~t---------tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL 178 (333)
T KOG0991|consen 126 TA---------------GAQQALRRTMEIYSNT---------TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQIL 178 (333)
T ss_pred hh---------------HHHHHHHHHHHHHccc---------chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHH
Confidence 51 2235566777766543 4677888988888777777 544 4556566666665
Q ss_pred HHHHHHHhhccCCCCHHHHHHHhhhcCCC
Q 001560 748 AILEHEIQRRSLECSDEILLDVASKCDGY 776 (1052)
Q Consensus 748 ~IL~~~l~~~~~~~sd~~l~~La~~teG~ 776 (1052)
.-+....+..+..++++.++.+.-..+|-
T Consensus 179 ~Rl~~v~k~Ekv~yt~dgLeaiifta~GD 207 (333)
T KOG0991|consen 179 KRLLEVAKAEKVNYTDDGLEAIIFTAQGD 207 (333)
T ss_pred HHHHHHHHHhCCCCCcchHHHhhhhccch
Confidence 55556666677888899898888777773
No 223
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.85 E-value=3.5e-08 Score=108.31 Aligned_cols=184 Identities=20% Similarity=0.302 Sum_probs=110.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhc-----cCCeEEEEeccch
Q 001560 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIVIFDNLDS 666 (1052)
Q Consensus 592 ~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~-----~~PsIL~IDEiD~ 666 (1052)
.++|+||||||||+|||.++....... ..++.+++..-. ..+ ++++|+.+.. ....||||||++.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~---t~d----vR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAK---TND----VRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccc---hHH----HHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 499999999999999999999765322 334444433221 222 4455555432 4567999999999
Q ss_pred hccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCC-C-CCCchhhhcCCCcceeeeCCCCCHH
Q 001560 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-L-EKIPQSLTSSGRFDFHVQLPAPAAS 744 (1052)
Q Consensus 667 L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~-~-~~Ld~aL~r~gRF~~~i~i~~Pd~~ 744 (1052)
+-.. + ...|+-.++ .|.|.+|++|.. | -.++.+|.+ |.. +|.+.....+
T Consensus 234 FNks----Q-----------QD~fLP~VE-----------~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n 284 (554)
T KOG2028|consen 234 FNKS----Q-----------QDTFLPHVE-----------NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVN 284 (554)
T ss_pred hhhh----h-----------hhcccceec-----------cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHH
Confidence 7421 1 111222111 135888887653 3 367888988 543 6788888999
Q ss_pred HHHHHHHHHHhh-----c---c-----CCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCcccccccccc
Q 001560 745 ERKAILEHEIQR-----R---S-----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTL 811 (1052)
Q Consensus 745 eR~~IL~~~l~~-----~---~-----~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~l 811 (1052)
....||.+-+.. + + +.+++.+++.++..++|-....|..| +-++.....|.- ...+..+
T Consensus 285 ~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~L-ems~~m~~tr~g-------~~~~~~l 356 (554)
T KOG2028|consen 285 AVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNAL-EMSLSMFCTRSG-------QSSRVLL 356 (554)
T ss_pred HHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHhhcC-------Cccccee
Confidence 999999875441 1 1 12556679999999999654444332 333222333311 1122456
Q ss_pred ccccccccccc
Q 001560 812 VRDDFSQAMHE 822 (1052)
Q Consensus 812 t~eDf~~Al~~ 822 (1052)
+.+|...++..
T Consensus 357 SidDvke~lq~ 367 (554)
T KOG2028|consen 357 SIDDVKEGLQR 367 (554)
T ss_pred cHHHHHHHHhh
Confidence 77777666543
No 224
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.4e-08 Score=104.58 Aligned_cols=198 Identities=22% Similarity=0.286 Sum_probs=124.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc--CCchhhHHHHhhhhHHHhhc----cCCeEEEEecc
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEALD----HAPSIVIFDNL 664 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~--~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEi 664 (1052)
.+|||.||+|||||.||+.+|+.|. .++...|+..|. |.-.++.+..+..+++.|.. .+.+|++|||+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~Ln------VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEI 171 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEI 171 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhC------CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEech
Confidence 5699999999999999999999998 778888888876 33335577778888877643 35689999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc----cCCc--------cCcCcEEEEEec----------------
Q 001560 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----RKSS--------CGIGPIAFVASA---------------- 716 (1052)
Q Consensus 665 D~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~----~~~~--------~~~~~V~vIatt---------------- 716 (1052)
|++...+..+.-.. .-.-+-+.+.|+.++++.... +... ....++++|+..
T Consensus 172 DKIarkSeN~SITR-DVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~ 250 (408)
T COG1219 172 DKIARKSENPSITR-DVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKK 250 (408)
T ss_pred hhhhccCCCCCccc-ccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCC
Confidence 99986543322111 111235677788888764321 1100 011145554321
Q ss_pred ------CCC-----C--------CCchhhhcC-------CCcceeeeCCCCCHHHHHHHHHH----H-------Hh--hc
Q 001560 717 ------QSL-----E--------KIPQSLTSS-------GRFDFHVQLPAPAASERKAILEH----E-------IQ--RR 757 (1052)
Q Consensus 717 ------n~~-----~--------~Ld~aL~r~-------gRF~~~i~i~~Pd~~eR~~IL~~----~-------l~--~~ 757 (1052)
+.. . -.+..|..- ||++....+...+.+...+||.. + +. ..
T Consensus 251 ~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V 330 (408)
T COG1219 251 GIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGV 330 (408)
T ss_pred cccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCc
Confidence 000 0 011122221 58887789999999999988751 1 11 22
Q ss_pred cCCCCHHHHHHHhhhc--CCCCHHHHHHHHHHHHHHHHhh
Q 001560 758 SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGR 795 (1052)
Q Consensus 758 ~~~~sd~~l~~La~~t--eG~s~~DL~~Lv~~A~~~a~~r 795 (1052)
.+.++++.+..+|+.. .+.-++-|+.++++.+......
T Consensus 331 ~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfe 370 (408)
T COG1219 331 ELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFE 370 (408)
T ss_pred eEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhh
Confidence 3557888888887653 3334566777777766554443
No 225
>PRK04132 replication factor C small subunit; Provisional
Probab=98.84 E-value=3.7e-08 Score=122.79 Aligned_cols=167 Identities=19% Similarity=0.196 Sum_probs=124.0
Q ss_pred ceEEEEc--CCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhcc--CCeEEEEeccch
Q 001560 591 GHILIHG--PPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH--APSIVIFDNLDS 666 (1052)
Q Consensus 591 ~~vLL~G--ppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~--~PsIL~IDEiD~ 666 (1052)
-+-+..| |++.||||+|+++|+++..+ .....++.+|+++..+ ...++..+.+........ ..-|+||||+|.
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rg--id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERG--INVIREKVKEFARTKPIGGASFKIIFLDEADA 641 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCccc--HHHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence 3577789 99999999999999997422 1225789999987543 345555555443322111 236999999999
Q ss_pred hccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHH
Q 001560 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 746 (1052)
Q Consensus 667 L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR 746 (1052)
+-. .-.+.|+..|+.+.. .+.+|.+||++..+.+.+++ |.. .+.|++|+.++.
T Consensus 642 Lt~---------------~AQnALLk~lEep~~---------~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i 694 (846)
T PRK04132 642 LTQ---------------DAQQALRRTMEMFSS---------NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDI 694 (846)
T ss_pred CCH---------------HHHHHHHHHhhCCCC---------CeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHH
Confidence 831 234567777777543 47899999999999999998 754 799999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 001560 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 747 ~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A 788 (1052)
...++..+.+.++.++++.+..++..+.| +.+..-++++.+
T Consensus 695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~ 735 (846)
T PRK04132 695 AKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 735 (846)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99999888877888899999999999998 445444555543
No 226
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.84 E-value=2.3e-08 Score=113.57 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=56.3
Q ss_pred CeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCcCcEEEEEecCCCC-CCchhhhcCC
Q 001560 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1052)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~Ld~aL~r~g 730 (1052)
.++||+||++.+-+ .+...|.+.|++-. ..+.......+++++++.|..+ .+++++..
T Consensus 129 ~GiL~lDEInrl~~---------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 129 RGYLYIDEVNLLED---------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred CCeEEecChHhCCH---------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--
Confidence 36999999998731 45556666665432 1111111123688999988755 58889988
Q ss_pred CcceeeeCCCCCH-HHHHHHHHHH
Q 001560 731 RFDFHVQLPAPAA-SERKAILEHE 753 (1052)
Q Consensus 731 RF~~~i~i~~Pd~-~eR~~IL~~~ 753 (1052)
||...+.+++|.. ++|.+|++..
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHh
Confidence 9999999988877 8999999864
No 227
>PRK04195 replication factor C large subunit; Provisional
Probab=98.84 E-value=1e-08 Score=123.16 Aligned_cols=97 Identities=28% Similarity=0.423 Sum_probs=73.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yv 919 (1052)
+..+++++|.+++++.+++.+....+ | .++.++||+||||||||++|+++|++++.+++.+++++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 46899999999999999988763210 1 23578999999999999999999999999999999887432
Q ss_pred cccHHHHHHHHHHHhc------CCCEEEEEeCCCccCC
Q 001560 920 GASEQAVRDIFSKATA------AAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 920 Gese~~ir~lf~~A~~------~~p~ILfiDEid~l~~ 951 (1052)
...++.+...+.. ..+.||+|||+|.+..
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 1223333333321 2567999999999965
No 228
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.83 E-value=3.6e-08 Score=115.23 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=77.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec-----ccccCCc-hhhHHHHhhhhHHHhhcc---CCeE
Q 001560 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC-----SRLSLEK-GPIIRQALSNFISEALDH---APSI 658 (1052)
Q Consensus 588 ~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~-----s~L~~~~-~~~~~~~l~~~f~~a~~~---~PsI 658 (1052)
..++++||+||||||||++|+++++.+.... ++.+..| +++.|.. ..... -...|.....+ ...+
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp~DLfG~l~i~~~~--~~g~f~r~~~G~L~~A~l 110 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTPEEVFGPLSIQALK--DEGRYQRLTSGYLPEAEI 110 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCcHHhcCcHHHhhhh--hcCchhhhcCCccccccE
Confidence 3457899999999999999999999875321 2222222 2333321 00000 01112111111 2349
Q ss_pred EEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-ccCCccCcCcEEEEEecCCCCC---CchhhhcCCCcce
Q 001560 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-KRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFDF 734 (1052)
Q Consensus 659 L~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~-~~~~~~~~~~V~vIattn~~~~---Ld~aL~r~gRF~~ 734 (1052)
||+|||+.+-+ .....|+..|.+-.- .+......+..++++++|.... ..+++.. ||..
T Consensus 111 LfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFli 173 (498)
T PRK13531 111 VFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLI 173 (498)
T ss_pred EeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEE
Confidence 99999976531 455666666654321 1111111222344555564321 2247777 8988
Q ss_pred eeeCCCCC-HHHHHHHHHH
Q 001560 735 HVQLPAPA-ASERKAILEH 752 (1052)
Q Consensus 735 ~i~i~~Pd-~~eR~~IL~~ 752 (1052)
.+.+|+|+ .++-.+|+..
T Consensus 174 ri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 174 RLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEECCCCCchHHHHHHHHc
Confidence 89999997 4555777764
No 229
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.83 E-value=2.8e-08 Score=115.79 Aligned_cols=209 Identities=19% Similarity=0.197 Sum_probs=127.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
....+.|....++++.+.+..+.... ..|||+|++||||-.+||+|.+.-.+ ...+++.+||..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~-------------a~VLI~GESGtGKElvAr~IH~~S~R---~~~PFVavNcaA 202 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSD-------------ASVLITGESGTGKELVARAIHQASPR---AKGPFIAVNCAA 202 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCCcHHHHHHHHHhhCcc---cCCCceeeeccc
Confidence 45578899999999999997775544 66999999999999999999986442 226899999987
Q ss_pred ccCCchhh-HHHHhhhhHHHh--------hccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccC
Q 001560 632 LSLEKGPI-IRQALSNFISEA--------LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (1052)
Q Consensus 632 L~~~~~~~-~~~~l~~~f~~a--------~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (1052)
+.....+. +-..-+..|..| .....+.||||||..+. .....+++..|.+. .+..-+.
T Consensus 203 ip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp-----------l~~Q~kLLRvLqe~--~~~rvG~ 269 (464)
T COG2204 203 IPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP-----------LELQVKLLRVLQER--EFERVGG 269 (464)
T ss_pred CCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCC-----------HHHHHHHHHHHHcC--eeEecCC
Confidence 65332211 111111111111 11245699999998773 23333444444321 1111111
Q ss_pred CccCcCcEEEEEecCCC--C-----CCchhhhcCCCcceeeeCCCCCHHHHHH----HHHHHHhh----c---cCCCCHH
Q 001560 703 SSCGIGPIAFVASAQSL--E-----KIPQSLTSSGRFDFHVQLPAPAASERKA----ILEHEIQR----R---SLECSDE 764 (1052)
Q Consensus 703 ~~~~~~~V~vIattn~~--~-----~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~----IL~~~l~~----~---~~~~sd~ 764 (1052)
.....-.|.||++|+.. + .+-+.|.. |+. ++.+..|...+|.+ ++++++++ . ...++++
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~ 346 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPE 346 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 11122368999999862 1 12233333 443 56777777666654 44444442 2 2457888
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 001560 765 ILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1052)
Q Consensus 765 ~l~~La~~teG~s~~DL~~Lv~~A~~~a 792 (1052)
.+..+..+..--+-++|++++++++..+
T Consensus 347 a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 347 ALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 8888877654447789999999987443
No 230
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.82 E-value=7.4e-08 Score=117.44 Aligned_cols=205 Identities=17% Similarity=0.176 Sum_probs=125.4
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s 630 (1052)
..+..+.|.+..+.++++.+..+.... .+|||+|++||||+++|+++....... ..+++.++|.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~-------------~pvli~Ge~GtGK~~lA~~ih~~s~r~---~~pfv~i~c~ 256 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSN-------------STVLLRGESGTGKELIAKAIHYLSPRA---KRPFVKVNCA 256 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcC-------------CCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeecC
Confidence 345678899999999999987765433 669999999999999999999865422 2679999998
Q ss_pred cccCCchhhHHHHh----hhhHHH--------hhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 001560 631 RLSLEKGPIIRQAL----SNFISE--------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1052)
Q Consensus 631 ~L~~~~~~~~~~~l----~~~f~~--------a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~ 698 (1052)
.+..... +..+ +..|.. ......++|||||++.|-. .+...|.+.++.-.
T Consensus 257 ~~~~~~~---~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~---------------~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 257 ALSETLL---ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP---------------AFQAKLLRVLQEGE 318 (534)
T ss_pred CCCHHHH---HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH---------------HHHHHHHHHHhcCc
Confidence 8743211 1111 000100 1112457999999999831 23344444444321
Q ss_pred --cccCCccCcCcEEEEEecCCC-C------CCchhhhcCCCcc-eeeeCCCCC--HHHHHHHHHHHHhhc------cCC
Q 001560 699 --EKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR------SLE 760 (1052)
Q Consensus 699 --~~~~~~~~~~~V~vIattn~~-~------~Ld~aL~r~gRF~-~~i~i~~Pd--~~eR~~IL~~~l~~~------~~~ 760 (1052)
..+........+.+|++++.. + .+.+.|.. |+. ..|.+|+.. .++...|+++++.+. ...
T Consensus 319 ~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~ 396 (534)
T TIGR01817 319 FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT 396 (534)
T ss_pred EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCC
Confidence 100000011247888887642 1 22233333 333 245666554 244555666665432 246
Q ss_pred CCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 761 ~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
++++.+..|..+..--+-++|++++++++..
T Consensus 397 ~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 397 ITPSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 8899999998886555889999999988743
No 231
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=1e-08 Score=123.07 Aligned_cols=93 Identities=18% Similarity=0.322 Sum_probs=69.6
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|++.+++.|...+.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 47899999999999999988762 233456899999999999999999999854
Q ss_pred ---------eEEEeechhhhhhhhcccHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ---------~~i~v~~s~l~~~yvGese~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
.++.+++++- ..-..+|++.+.+. .+...|+||||+|.|.
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS 131 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS 131 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC
Confidence 3445544321 12355777776653 2356799999999994
No 232
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.9e-08 Score=107.55 Aligned_cols=196 Identities=22% Similarity=0.325 Sum_probs=126.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc-CCc-hhhHHHHhhhhHHHhh----ccCCeEEEEecc
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS-LEK-GPIIRQALSNFISEAL----DHAPSIVIFDNL 664 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~-~~~-~~~~~~~l~~~f~~a~----~~~PsIL~IDEi 664 (1052)
.+|||.||+|+|||.||+.||+.+. .++...||..|. ..| .++++..|..++..|. ..+..|+||||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC------CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 5699999999999999999999998 888889999887 233 3457777777777764 346789999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCC--------ccCcCcEEEEEecCC--CC----------
Q 001560 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKS--------SCGIGPIAFVASAQS--LE---------- 720 (1052)
Q Consensus 665 D~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~----~~~~~--------~~~~~~V~vIattn~--~~---------- 720 (1052)
|++......- +....-.-+-+.+.|+.++++.. .++.. .....+|++|+..-- .+
T Consensus 301 DKi~~~~~~i-~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~ 379 (564)
T KOG0745|consen 301 DKITKKAESI-HTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDK 379 (564)
T ss_pred hhhcccCccc-cccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcch
Confidence 9997322111 11111112356667777776532 11110 011124566653110 00
Q ss_pred --------------------CC------------------------chhhhcCCCcceeeeCCCCCHHHHHHHHH-----
Q 001560 721 --------------------KI------------------------PQSLTSSGRFDFHVQLPAPAASERKAILE----- 751 (1052)
Q Consensus 721 --------------------~L------------------------d~aL~r~gRF~~~i~i~~Pd~~eR~~IL~----- 751 (1052)
.. -|.|. |||+..+.|...+.+++.+||.
T Consensus 380 slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfV--GRfPVlVplh~L~~~~Lv~VLtEPkna 457 (564)
T KOG0745|consen 380 SLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFV--GRFPVLVPLHSLDEDQLVRVLTEPKNA 457 (564)
T ss_pred hcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHh--cccceEeeccccCHHHHHHHHhcchhh
Confidence 00 01111 6999899999999999999875
Q ss_pred ------HHHh--hccCCCCHHHHHHHhhhc--CCCCHHHHHHHHHHHHHHHHhh
Q 001560 752 ------HEIQ--RRSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGR 795 (1052)
Q Consensus 752 ------~~l~--~~~~~~sd~~l~~La~~t--eG~s~~DL~~Lv~~A~~~a~~r 795 (1052)
.++. ...+.++++.++.+|+.. .+--++-|+.++++++..+...
T Consensus 458 L~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 458 LGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 1222 123558888888888763 4445677888888888776554
No 233
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.82 E-value=1.4e-08 Score=98.97 Aligned_cols=75 Identities=29% Similarity=0.463 Sum_probs=60.3
Q ss_pred CCceeEecCCCCchhhHHHHHHHHcCCe---EEEeechhhhhh--------------hhcccHHHHHHHHHHHhcCCCEE
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNK--------------YIGASEQAVRDIFSKATAAAPCL 940 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~~~~---~i~v~~s~l~~~--------------yvGese~~ir~lf~~A~~~~p~I 940 (1052)
+..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.|+...+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 888877654322 22345567889999998887889
Q ss_pred EEEeCCCccCCc
Q 001560 941 LFFDEFDSIAPK 952 (1052)
Q Consensus 941 LfiDEid~l~~~ 952 (1052)
+||||++.+...
T Consensus 82 iiiDei~~~~~~ 93 (148)
T smart00382 82 LILDEITSLLDA 93 (148)
T ss_pred EEEECCcccCCH
Confidence 999999999753
No 234
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.81 E-value=3.2e-08 Score=113.39 Aligned_cols=213 Identities=18% Similarity=0.191 Sum_probs=126.1
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+.++.|.+..+++++++++.+ .+...+||++|++||||+.+|+++....... ...+++.+||
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~-------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~--~~~PFI~~NC 138 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY-------------APSGLPVLIIGETGTGKELFARLIHALSARR--AEAPFIAFNC 138 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh-------------CCCCCcEEEecCCCccHHHHHHHHHHhhhcc--cCCCEEEEEH
Confidence 445668899999999999999774 2334779999999999999999999543321 3478999999
Q ss_pred ccccCCchhhH-HHHhhhhHHHh--------hccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh--c
Q 001560 630 SRLSLEKGPII-RQALSNFISEA--------LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY--G 698 (1052)
Q Consensus 630 s~L~~~~~~~~-~~~l~~~f~~a--------~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~--~ 698 (1052)
..+........ -..-+..|.-+ .+...++||+||++.+-+ .....|...+++- .
T Consensus 139 a~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~---------------~~Q~kLl~~le~g~~~ 203 (403)
T COG1221 139 AAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP---------------EGQEKLLRVLEEGEYR 203 (403)
T ss_pred HHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH---------------hHHHHHHHHHHcCceE
Confidence 98775432211 00111111111 112346999999998842 2334444555541 1
Q ss_pred cccCCccCcCcEEEEEecCCC--CCCch--hhhcCCCcceeeeCCCCCH--HHHHHHHHHHHh----hccCC---CCHHH
Q 001560 699 EKRKSSCGIGPIAFVASAQSL--EKIPQ--SLTSSGRFDFHVQLPAPAA--SERKAILEHEIQ----RRSLE---CSDEI 765 (1052)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~--~~Ld~--aL~r~gRF~~~i~i~~Pd~--~eR~~IL~~~l~----~~~~~---~sd~~ 765 (1052)
.-+........|.+|++|+.. +.+-. .+.++ |+...|++|+... +++..++++++. +.+.. .+++.
T Consensus 204 rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a 282 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEA 282 (403)
T ss_pred ecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 111111223368888887741 12222 22221 5555666666544 233344455544 33333 23355
Q ss_pred HHHHhhh-cCCCCHHHHHHHHHHHHHHHHh
Q 001560 766 LLDVASK-CDGYDAYDLEILVDRTVHAAVG 794 (1052)
Q Consensus 766 l~~La~~-teG~s~~DL~~Lv~~A~~~a~~ 794 (1052)
+..+-.. .+| +-++|++++++++..+..
T Consensus 283 ~~~L~~y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 283 LRALLAYDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred HHHHHhCCCCC-cHHHHHHHHHHHHHHhcc
Confidence 6665555 455 788999999999876643
No 235
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.80 E-value=1.8e-08 Score=114.69 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~y 918 (1052)
.+..+++++|.+++++.+...+.. + +.+..+||+||||+|||++|+++++..+.+++.+++++ .+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 346899999999999999887752 1 22344666999999999999999999999999998876 22
Q ss_pred hcccHHHHHHHHHHH-hcCCCEEEEEeCCCcc
Q 001560 919 IGASEQAVRDIFSKA-TAAAPCLLFFDEFDSI 949 (1052)
Q Consensus 919 vGese~~ir~lf~~A-~~~~p~ILfiDEid~l 949 (1052)
+......+.+..... ....+++|+|||+|.+
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l 112 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL 112 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence 211111122221111 1135779999999988
No 236
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.80 E-value=9e-08 Score=108.98 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=55.0
Q ss_pred CeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCcCcEEEEEecCCCC-CCchhhhcCC
Q 001560 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1052)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~Ld~aL~r~g 730 (1052)
..+|||||++.+-+ .+...|.+.|+.-. ..+.......++++|++.|..+ .+++++..
T Consensus 132 ~GvL~lDEi~~L~~---------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld-- 194 (337)
T TIGR02030 132 RGILYIDEVNLLED---------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD-- 194 (337)
T ss_pred CCEEEecChHhCCH---------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--
Confidence 47999999998731 34455555555421 1110011112578888888655 68899999
Q ss_pred CcceeeeCCCCCH-HHHHHHHHHH
Q 001560 731 RFDFHVQLPAPAA-SERKAILEHE 753 (1052)
Q Consensus 731 RF~~~i~i~~Pd~-~eR~~IL~~~ 753 (1052)
||...+.++.|+. ++|.+|++..
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhh
Confidence 9999999999876 8899998863
No 237
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.4e-08 Score=125.30 Aligned_cols=93 Identities=17% Similarity=0.301 Sum_probs=65.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeE-------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF------------- 906 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~------------- 906 (1052)
+..|++|+|++.+++.|++.+... +.+..+||+||||||||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 478999999999999998877621 2233469999999999999999999986531
Q ss_pred -----------EEeechhhhhhhhcccHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 907 -----------ISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 907 -----------i~v~~s~l~~~yvGese~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
+.+++.+ ...-..+|++.+.+. .+...|+||||+|.|.
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT 132 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS 132 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC
Confidence 1121110 012244666665553 3445699999999994
No 238
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.1e-07 Score=106.90 Aligned_cols=189 Identities=20% Similarity=0.236 Sum_probs=115.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc-ee--------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VA-------- 622 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~-~~-------- 622 (1052)
.+..+.|.+.+...+...+.. ...+..+||+||+|+|||++|+.+|+.+.+.... ..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~--------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE--------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc--------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 456778888877766654421 1223459999999999999999999998752100 00
Q ss_pred ---------------eEEEEecc-ccc------CCchhhHHHHhhhhHHH-hhccCCeEEEEeccchhccCCCCCCCCCC
Q 001560 623 ---------------HIVFVCCS-RLS------LEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQP 679 (1052)
Q Consensus 623 ---------------~v~~v~~s-~L~------~~~~~~~~~~l~~~f~~-a~~~~PsIL~IDEiD~L~~~~~~~e~~~~ 679 (1052)
.+..+... +-. .-..+.++. +.+.+.. ......-|++|||+|.+-.
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~-l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRR-VGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHH-HHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 01111110 000 011233333 2333332 2234456999999999831
Q ss_pred chhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccC
Q 001560 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (1052)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~ 759 (1052)
.-.+.|+..+++... ...+|..++.++.+.+.+++ |.. .+.+++|+.++..++++......
T Consensus 156 -----~aanaLLk~LEEpp~---------~~~fiLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~-- 216 (351)
T PRK09112 156 -----NAANAILKTLEEPPA---------RALFILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQ-- 216 (351)
T ss_pred -----HHHHHHHHHHhcCCC---------CceEEEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhccc--
Confidence 223446666666433 24555556777888888888 764 89999999999999998743221
Q ss_pred CCCHHHHHHHhhhcCCCCHHHHHHHH
Q 001560 760 ECSDEILLDVASKCDGYDAYDLEILV 785 (1052)
Q Consensus 760 ~~sd~~l~~La~~teG~s~~DL~~Lv 785 (1052)
.++++.+..++..+.| +++....++
T Consensus 217 ~~~~~~~~~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 217 GSDGEITEALLQRSKG-SVRKALLLL 241 (351)
T ss_pred CCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 2567778888888887 444444444
No 239
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.79 E-value=1e-07 Score=115.41 Aligned_cols=205 Identities=13% Similarity=0.156 Sum_probs=121.1
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s 630 (1052)
..|.++.|.+..+..+++++..+.... .+|||+|++||||+++|+++...... ...+++.++|.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~-------------~pvlI~GE~GtGK~~lA~aiH~~s~r---~~~pfv~inca 264 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLD-------------APLLITGDTGTGKDLLAYACHLRSPR---GKKPFLALNCA 264 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeccc
Confidence 456678899999999999887654322 56999999999999999998765432 22578899999
Q ss_pred cccCCchhhH-----H-------HHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh-
Q 001560 631 RLSLEKGPII-----R-------QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY- 697 (1052)
Q Consensus 631 ~L~~~~~~~~-----~-------~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~- 697 (1052)
.+.....+.. . ..-..+|+. ...+.|||||++.+-+ .+...|.+.++.-
T Consensus 265 ~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~~---------------~~Q~~Ll~~l~~~~ 326 (520)
T PRK10820 265 SIPDDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMSP---------------RMQAKLLRFLNDGT 326 (520)
T ss_pred cCCHHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCCH---------------HHHHHHHHHHhcCC
Confidence 8753211100 0 000112332 2356899999999831 2233333333321
Q ss_pred -ccccCCccCcCcEEEEEecCCC-C------CCchhhhcCCCcc-eeeeCCCCCH--HHHHHHHHHHHh----hcc---C
Q 001560 698 -GEKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQ----RRS---L 759 (1052)
Q Consensus 698 -~~~~~~~~~~~~V~vIattn~~-~------~Ld~aL~r~gRF~-~~i~i~~Pd~--~eR~~IL~~~l~----~~~---~ 759 (1052)
...+........+.+|++++.. . .+.+.|.. |+. ..+++|+... ++...++.+++. +.+ .
T Consensus 327 ~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~ 404 (520)
T PRK10820 327 FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRP 404 (520)
T ss_pred cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCC
Confidence 1111111112257788877653 1 23344444 544 3345554433 223334444443 333 3
Q ss_pred CCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 760 ~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
.++++.+..|..+..--+-++|++++.+|+..
T Consensus 405 ~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 405 KLAADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 58889999998885445788999999888754
No 240
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=3.1e-08 Score=114.78 Aligned_cols=93 Identities=23% Similarity=0.324 Sum_probs=65.8
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe--------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------------- 905 (1052)
+..|++++|++.+.+.++..+... +.+..+||+||||||||++|+++|+.+...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 468999999999999998877621 223357999999999999999999987532
Q ss_pred ----------EEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 ----------~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
++.++++. ...-..++++.+.+.. +...|+||||+|.+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~ 132 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS 132 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC
Confidence 22222211 1223457777766542 234699999999983
No 241
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.78 E-value=6.4e-08 Score=111.13 Aligned_cols=210 Identities=19% Similarity=0.202 Sum_probs=131.1
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
...+..++|.+.++.++++.+..+...+ ..|||.|.+||||-.+||+|.+.-.. ...+++.+||
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd-------------~tVLi~GETGtGKElvAraIH~~S~R---~~kPfV~~NC 282 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD-------------STVLIRGETGTGKELVARAIHQLSPR---RDKPFVKLNC 282 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC-------------CeEEEecCCCccHHHHHHHHHhhCcc---cCCCceeeec
Confidence 4456688999999999999998886555 67999999999999999999986443 3378999999
Q ss_pred ccccCCch-hhHHHHhhhhHHHhhc--------cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH-HHHhcc
Q 001560 630 SRLSLEKG-PIIRQALSNFISEALD--------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI-MDEYGE 699 (1052)
Q Consensus 630 s~L~~~~~-~~~~~~l~~~f~~a~~--------~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~-ld~~~~ 699 (1052)
..+...-. .++-..-+..|.-|.. ...+-||||||..|- ......++..|.+. ++...+
T Consensus 283 AAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 283 AALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred cccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC-----------HHHHHHHHHHHhhcceeecCC
Confidence 88763322 1222223333433322 235689999997662 22333444444321 111222
Q ss_pred ccCCccCcCcEEEEEecCCCCCCchhhhcCCCcce-------eeeCCCCCHHHHHH----HHHHHHh----hc---cCCC
Q 001560 700 KRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAASERKA----ILEHEIQ----RR---SLEC 761 (1052)
Q Consensus 700 ~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~-------~i~i~~Pd~~eR~~----IL~~~l~----~~---~~~~ 761 (1052)
. ......|.+|++||+- +-... +.|+|-. ++-+..|...+|.+ +.+++++ +. ...+
T Consensus 352 ~---r~ikVDVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~l 425 (550)
T COG3604 352 D---RTIKVDVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSL 425 (550)
T ss_pred C---ceeEEEEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCccccc
Confidence 1 1112368999999962 22221 1223321 34455555555532 2233333 22 3458
Q ss_pred CHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 001560 762 SDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1052)
Q Consensus 762 sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a 792 (1052)
+.++++.+..+..--+-++|++++++|+..+
T Consensus 426 s~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 426 SAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 8899999988765557899999999998776
No 242
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.77 E-value=1.4e-07 Score=118.27 Aligned_cols=204 Identities=15% Similarity=0.196 Sum_probs=123.8
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
+..+.++.|.+..+..+++.+..+... ..+|||+|++|||||++|+++....... ..+++.++|
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~-------------~~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c 435 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS-------------DSTVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNC 435 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEec
Confidence 345667889999999999988766433 2579999999999999999999865422 267899999
Q ss_pred ccccCCchhh-------------HHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 001560 630 SRLSLEKGPI-------------IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (1052)
Q Consensus 630 s~L~~~~~~~-------------~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~ 696 (1052)
..+....... ..... ..+.. ...++|||||++.+- . .+...|.+.++.
T Consensus 436 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~---a~~GtL~Ldei~~L~-----------~----~~Q~~L~~~l~~ 496 (686)
T PRK15429 436 AAMPAGLLESDLFGHERGAFTGASAQRI-GRFEL---ADKSSLFLDEVGDMP-----------L----ELQPKLLRVLQE 496 (686)
T ss_pred ccCChhHhhhhhcCcccccccccccchh-hHHHh---cCCCeEEEechhhCC-----------H----HHHHHHHHHHHh
Confidence 8764221110 00001 12222 345799999999983 1 233444444443
Q ss_pred hc--cccCCccCcCcEEEEEecCCCC-------CCchhhhcCCCcceeeeCCCCCHHHHHH----HHHHHHhh----cc-
Q 001560 697 YG--EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASERKA----ILEHEIQR----RS- 758 (1052)
Q Consensus 697 ~~--~~~~~~~~~~~V~vIattn~~~-------~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~----IL~~~l~~----~~- 758 (1052)
-. ..+........+.+|++++..- .+...|.. |+. .+.+..|...+|.+ ++++++.+ .+
T Consensus 497 ~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~ 573 (686)
T PRK15429 497 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGR 573 (686)
T ss_pred CCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCC
Confidence 21 1001011122578888887531 12222222 332 34455555555543 45555432 22
Q ss_pred -C-CCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 759 -L-ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 759 -~-~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
. .++++.+..|..+.--.+-++|++++++++..
T Consensus 574 ~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 574 NIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred CCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 2 37889999998876656889999999998754
No 243
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.77 E-value=1.4e-08 Score=116.15 Aligned_cols=140 Identities=24% Similarity=0.348 Sum_probs=88.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc------ccCCchhhHHHHhhhhHHHhhc--cCC--eEE
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKGPIIRQALSNFISEALD--HAP--SIV 659 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~------L~~~~~~~~~~~l~~~f~~a~~--~~P--sIL 659 (1052)
.+++||.||||||||++|+.+|+.++ ..+..+.|.. +.|.+.-.....-...+..... ... .++
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~il 116 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVIL 116 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEE
Confidence 47899999999999999999999998 5677777753 3333222111000000000000 011 499
Q ss_pred EEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCC---ccCcCcEEEEEecC-----CCCCCchhhhcCCC
Q 001560 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS---SCGIGPIAFVASAQ-----SLEKIPQSLTSSGR 731 (1052)
Q Consensus 660 ~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~---~~~~~~V~vIattn-----~~~~Ld~aL~r~gR 731 (1052)
++|||+..-+ .+...|+..|++..-.... .....++++|+|.| ....+++++++ |
T Consensus 117 l~DEInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--R 179 (329)
T COG0714 117 LLDEINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--R 179 (329)
T ss_pred EEeccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--h
Confidence 9999987632 5566777777764322111 11234688999989 45578999999 9
Q ss_pred cceeeeCCCCC-HHHHHHHHHH
Q 001560 732 FDFHVQLPAPA-ASERKAILEH 752 (1052)
Q Consensus 732 F~~~i~i~~Pd-~~eR~~IL~~ 752 (1052)
|...+.++.|+ ..+...++..
T Consensus 180 f~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 180 FLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred EEEEEecCCCCchHHHHHHHHh
Confidence 98889999994 4444444443
No 244
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.77 E-value=8.9e-09 Score=102.48 Aligned_cols=115 Identities=21% Similarity=0.364 Sum_probs=69.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhh---h-------hHHHhhccCCeEEEE
Q 001560 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALS---N-------FISEALDHAPSIVIF 661 (1052)
Q Consensus 592 ~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~---~-------~f~~a~~~~PsIL~I 661 (1052)
+|||+||||||||++|+.+|+.++ ..+..+.|...... +++..... . .+..+ ...+.+++|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~--~dl~g~~~~~~~~~~~~~~~l~~a-~~~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTE--EDLIGSYDPSNGQFEFKDGPLVRA-MRKGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTH--HHHHCEEET-TTTTCEEE-CCCTT-HHEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh------cceEEEEecccccc--ccceeeeeeccccccccccccccc-ccceeEEEE
Confidence 589999999999999999999996 66777777653211 11100000 0 00000 125689999
Q ss_pred eccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc---cCCccC-cC------cEEEEEecCCCC----CCchhhh
Q 001560 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---RKSSCG-IG------PIAFVASAQSLE----KIPQSLT 727 (1052)
Q Consensus 662 DEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~---~~~~~~-~~------~V~vIattn~~~----~Ld~aL~ 727 (1052)
||++..- ..+...|...++...-. ...... .. .+.+|+|+|+.+ .++++++
T Consensus 72 DEin~a~---------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~ 136 (139)
T PF07728_consen 72 DEINRAP---------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALL 136 (139)
T ss_dssp SSCGG-----------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHH
T ss_pred CCcccCC---------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHH
Confidence 9998762 15566666666643211 011111 11 389999999988 8899999
Q ss_pred cCCCc
Q 001560 728 SSGRF 732 (1052)
Q Consensus 728 r~gRF 732 (1052)
+ ||
T Consensus 137 ~--Rf 139 (139)
T PF07728_consen 137 D--RF 139 (139)
T ss_dssp T--T-
T ss_pred h--hC
Confidence 8 77
No 245
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.77 E-value=8.7e-08 Score=111.53 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=125.3
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~ 629 (1052)
..+|+++.|-+..+..+++.+......+ ..|||.|.+||||..+|+++.+.-. ....+|+.+||
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~td-------------stVLi~GESGTGKElfA~~IH~~S~---R~~~PFIaiNC 304 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTD-------------STVLILGESGTGKELFARAIHNLSP---RANGPFIAINC 304 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCC-------------CcEEEecCCCccHHHHHHHHHhcCc---ccCCCeEEEec
Confidence 4567889999999999888887664433 6799999999999999999998544 33378999999
Q ss_pred ccccCCchh-hHHHHhhhhHHHhhc---------cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh--
Q 001560 630 SRLSLEKGP-IIRQALSNFISEALD---------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY-- 697 (1052)
Q Consensus 630 s~L~~~~~~-~~~~~l~~~f~~a~~---------~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~-- 697 (1052)
..+...-.+ ++-..-...|.-|.. ...+-||||||..+- . .+..-|++.+++-
T Consensus 305 aAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp-----------l----~LQaKLLRVLQEkei 369 (560)
T COG3829 305 AAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP-----------L----PLQAKLLRVLQEKEI 369 (560)
T ss_pred ccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC-----------H----HHHHHHHHHHhhceE
Confidence 775422111 111111122222222 124589999997762 2 3334444444432
Q ss_pred ccccCCccCcCcEEEEEecCCC--CCCc-----hhhhcCCCcceeeeCCCCCHHHHHH----HHHHHHhh----cc--C-
Q 001560 698 GEKRKSSCGIGPIAFVASAQSL--EKIP-----QSLTSSGRFDFHVQLPAPAASERKA----ILEHEIQR----RS--L- 759 (1052)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~--~~Ld-----~aL~r~gRF~~~i~i~~Pd~~eR~~----IL~~~l~~----~~--~- 759 (1052)
..-+........|.+||+||.. +.+- ..|.- |.. ++.+..|...+|.+ +..+++.+ .+ .
T Consensus 370 ~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~ 446 (560)
T COG3829 370 ERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVK 446 (560)
T ss_pred EecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcc
Confidence 1111112223369999999962 1121 12211 222 45555666555543 33444442 22 2
Q ss_pred CCCHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 001560 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 760 ~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~ 790 (1052)
.++++.+..|.++..--+-++|++++++++.
T Consensus 447 ~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 447 GLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred cCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 2788888888777544478999999999874
No 246
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=2.2e-08 Score=121.85 Aligned_cols=93 Identities=19% Similarity=0.330 Sum_probs=66.9
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe--------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------------- 905 (1052)
+..|++++|++.+.+.|...+.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 46899999999999999887763 1223347999999999999999999998552
Q ss_pred ----------EEEeechhhhhhhhcccHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 ----------~i~v~~s~l~~~yvGese~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
++.+++.+ ...-..+|++.+.+. .+...|+||||+|.|.
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls 132 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS 132 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC
Confidence 33333321 012345666666553 3456799999999994
No 247
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2e-08 Score=112.56 Aligned_cols=75 Identities=32% Similarity=0.545 Sum_probs=62.7
Q ss_pred CCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh-hhhhcccH-HHHHHHHHHHh----cCCCEEEEEeCCCccCC
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIGASE-QAVRDIFSKAT----AAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~-~~yvGese-~~ir~lf~~A~----~~~p~ILfiDEid~l~~ 951 (1052)
.+++||.||+|+|||.+|+.||+.++.||...+|..|. ..|+|+.- .-+..++..|. +.+..|+||||+|++..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 47899999999999999999999999999999999886 67999974 45667776652 22344999999999984
Q ss_pred c
Q 001560 952 K 952 (1052)
Q Consensus 952 ~ 952 (1052)
.
T Consensus 306 ~ 306 (564)
T KOG0745|consen 306 K 306 (564)
T ss_pred c
Confidence 3
No 248
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=2.2e-08 Score=120.18 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe--------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------------- 905 (1052)
+..|++++|++.+.+.|+..+.. -+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 46899999999999999988862 1233457999999999999999999988542
Q ss_pred ----------EEEeechhhhhhhhcccHHHHHHHHHHHh----cCCCEEEEEeCCCccCC
Q 001560 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 906 ----------~i~v~~s~l~~~yvGese~~ir~lf~~A~----~~~p~ILfiDEid~l~~ 951 (1052)
+++++++. ...-..+|++.+.+. .+...|+||||+|.+..
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG 133 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH
Confidence 55555432 122345777776653 24557999999999953
No 249
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.75 E-value=8.8e-08 Score=93.39 Aligned_cols=76 Identities=30% Similarity=0.420 Sum_probs=55.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCch--------------hhHHHHhhhhHHHhhccC
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG--------------PIIRQALSNFISEALDHA 655 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~--------------~~~~~~l~~~f~~a~~~~ 655 (1052)
+.+++|+||||||||++++.+|..+.... ..+++++++....... ......+...+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999987432 2477777765432211 122344556777777666
Q ss_pred CeEEEEeccchhc
Q 001560 656 PSIVIFDNLDSII 668 (1052)
Q Consensus 656 PsIL~IDEiD~L~ 668 (1052)
+.++++||++.+.
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 8999999999985
No 250
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.75 E-value=1.4e-07 Score=117.63 Aligned_cols=199 Identities=13% Similarity=0.165 Sum_probs=121.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
.+.++.|.+..+..+++.+..+.... .+|||+|++||||+++|+++....... ..+++.+||..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~-------------~pvli~Ge~GtGK~~~A~~ih~~s~r~---~~pfv~vnc~~ 386 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSS-------------FPVLLCGEEGVGKALLAQAIHNESERA---AGPYIAVNCQL 386 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcC-------------CCEEEECCCCcCHHHHHHHHHHhCCcc---CCCeEEEECCC
Confidence 46678889999999999887665332 569999999999999999999865422 26789999988
Q ss_pred ccCCchhhHHHHhhhhHHH------------hhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 001560 632 LSLEKGPIIRQALSNFISE------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (1052)
Q Consensus 632 L~~~~~~~~~~~l~~~f~~------------a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~ 699 (1052)
+..... . .++|.. ......+.|||||++.+- . .+...|.+.++.-.-
T Consensus 387 ~~~~~~---~---~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~-----------~----~~Q~~Ll~~l~~~~~ 445 (638)
T PRK11388 387 YPDEAL---A---EEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS-----------P----ELQSALLQVLKTGVI 445 (638)
T ss_pred CChHHH---H---HHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC-----------H----HHHHHHHHHHhcCcE
Confidence 753211 1 111210 111245799999999883 1 233344444443210
Q ss_pred c--cCCccCcCcEEEEEecCCCC-------CCchhhhcCCCcceeeeCCCCCHHHH----HHHHHHHHhhc------cCC
Q 001560 700 K--RKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASER----KAILEHEIQRR------SLE 760 (1052)
Q Consensus 700 ~--~~~~~~~~~V~vIattn~~~-------~Ld~aL~r~gRF~~~i~i~~Pd~~eR----~~IL~~~l~~~------~~~ 760 (1052)
. +........+.+|++++..- .+.+.|.. |+. .+.+..|...+| ..++++++.+. ...
T Consensus 446 ~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~ 522 (638)
T PRK11388 446 TRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK 522 (638)
T ss_pred EeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 0 00000011477888887531 12222222 332 344445555555 33445554421 245
Q ss_pred CCHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 001560 761 CSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 761 ~sd~~l~~La~~teG~s~~DL~~Lv~~A~~ 790 (1052)
++++.+..|..+.---+.++|++++++++.
T Consensus 523 ~s~~a~~~L~~y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 523 IDDDALARLVSYRWPGNDFELRSVIENLAL 552 (638)
T ss_pred cCHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 889999999888755588999999998774
No 251
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.74 E-value=1.6e-07 Score=113.64 Aligned_cols=204 Identities=17% Similarity=0.182 Sum_probs=124.5
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccc
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L 632 (1052)
...+.|.+..+..+.+.+..+... +.+|||+|++||||+++|+++....... ..+++.++|..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~-------------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~---~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS-------------DLNVLILGETGVGKELVARAIHAASPRA---DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC-------------CCcEEEECCCCccHHHHHHHHHHhCCcC---CCCeEEEEcccC
Confidence 346778899999999998776433 3679999999999999999999875422 257899999987
Q ss_pred cCCchhh-H----HHHh-------hhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--
Q 001560 633 SLEKGPI-I----RQAL-------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1052)
Q Consensus 633 ~~~~~~~-~----~~~l-------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1052)
.....+. + +..+ ...|.. ...+.|||||+|.|- . .+...|.+.++.-.
T Consensus 250 ~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~-----------~----~~Q~~Ll~~l~~~~~~ 311 (509)
T PRK05022 250 PESLAESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELP-----------L----ALQAKLLRVLQYGEIQ 311 (509)
T ss_pred ChHHHHHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCC-----------H----HHHHHHHHHHhcCCEe
Confidence 5321110 0 0000 012222 245689999999983 1 23334444443211
Q ss_pred cccCCccCcCcEEEEEecCCCC-------CCchhhhcCCCcceeeeCCCCCHHHHH----HHHHHHHhh-------ccCC
Q 001560 699 EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASERK----AILEHEIQR-------RSLE 760 (1052)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~~-------~Ld~aL~r~gRF~~~i~i~~Pd~~eR~----~IL~~~l~~-------~~~~ 760 (1052)
.-+........+.+|++++..- .+.+.|.. |+. .+.+..|...+|. .++++++++ ....
T Consensus 312 ~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~ 388 (509)
T PRK05022 312 RVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLR 388 (509)
T ss_pred eCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCC
Confidence 1000011112578888887531 23333333 343 2344445444443 344444432 2345
Q ss_pred CCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 001560 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1052)
Q Consensus 761 ~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~ 793 (1052)
++++.+..|..+.--.+-++|++++++|+..+.
T Consensus 389 ~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 389 LSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 889999999888766688999999999886553
No 252
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=2.3e-08 Score=121.28 Aligned_cols=94 Identities=19% Similarity=0.321 Sum_probs=68.5
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe-------------
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------- 905 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~------------- 905 (1052)
.+..|++++|++.+++.|+..+.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 347899999999999999988773 1334568999999999999999999987432
Q ss_pred -----------EEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 906 -----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 -----------~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
+++++.+ .+.....+|++++.+.. +...|+||||+|.+.
T Consensus 79 Cr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls 132 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS 132 (709)
T ss_pred HHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC
Confidence 2222221 12234568888876532 345799999999873
No 253
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=2.8e-07 Score=104.77 Aligned_cols=180 Identities=15% Similarity=0.154 Sum_probs=111.3
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce--eeEEEEecc
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV--AHIVFVCCS 630 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~--~~v~~v~~s 630 (1052)
+.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.+..... ..+..+...
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~--------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIK--------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred hhhccCcHHHHHHHHHHHHc--------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 55677877777766664421 12234589999999999999999999875432111 122223221
Q ss_pred cccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcE
Q 001560 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1052)
Q Consensus 631 ~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1052)
+-..-..+.++..+..+.........-|++||++|.+-. .-.+.|+..+++... .+
T Consensus 69 ~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEepp~---------~t 124 (313)
T PRK05564 69 NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEEPPK---------GV 124 (313)
T ss_pred cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCC---------Ce
Confidence 111112334444333222222233456999999988731 234456666665432 35
Q ss_pred EEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCC
Q 001560 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1052)
Q Consensus 711 ~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s 777 (1052)
.+|.+|+.++.+.+.+++ |.. .+++++|+.++....+...+. ..+++.+..++..+.|-.
T Consensus 125 ~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 125 FIILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIP 184 (313)
T ss_pred EEEEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCH
Confidence 666666778899999988 654 899999999998777765432 356666777777777643
No 254
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.74 E-value=1.6e-07 Score=107.00 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=97.1
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcccee-eEE----
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVA-HIV---- 625 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~-~v~---- 625 (1052)
..|+.+.|.+..+..++.. +.. |..+++||.|++|||||++||++++.+........ ++.
T Consensus 14 ~pf~~ivGq~~~k~al~~~---~~~------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILN---VID------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCHHHHhChHHHHHHHHHh---ccC------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3566788888765554331 111 23468999999999999999999988763211000 000
Q ss_pred ------------------------EEecccccCCchhhHHHH------hhhhHHHhh---------ccCCeEEEEeccch
Q 001560 626 ------------------------FVCCSRLSLEKGPIIRQA------LSNFISEAL---------DHAPSIVIFDNLDS 666 (1052)
Q Consensus 626 ------------------------~v~~s~L~~~~~~~~~~~------l~~~f~~a~---------~~~PsIL~IDEiD~ 666 (1052)
.+.|-.+.. +..... +...+.... ....++||+||++.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~---~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInr 155 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPL---GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNL 155 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCC---CCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHh
Confidence 000000000 000000 111111111 12346999999998
Q ss_pred hccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCcCcEEEEEecCCCC-CCchhhhcCCCcceeeeCCCC
Q 001560 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGRFDFHVQLPAP 741 (1052)
Q Consensus 667 L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~Ld~aL~r~gRF~~~i~i~~P 741 (1052)
+-+ .+...|.+.|+.-. ..+.......++++|+|.|..+ .+++.+.. ||...+.+..|
T Consensus 156 L~~---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~ 218 (350)
T CHL00081 156 LDD---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTV 218 (350)
T ss_pred CCH---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCC
Confidence 832 34455656665411 0111111122678888888655 68999999 99999999999
Q ss_pred C-HHHHHHHHHHH
Q 001560 742 A-ASERKAILEHE 753 (1052)
Q Consensus 742 d-~~eR~~IL~~~ 753 (1052)
+ .+++.+|++..
T Consensus 219 ~~~~~e~~il~~~ 231 (350)
T CHL00081 219 KDPELRVKIVEQR 231 (350)
T ss_pred CChHHHHHHHHhh
Confidence 7 59999999864
No 255
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.73 E-value=9e-08 Score=98.90 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=79.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhc-cCccceeeEEEEecccccCCchhhHHHHhhhhHHHh----hccCCeEEEEecc
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLE-HHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNL 664 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~-~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a----~~~~PsIL~IDEi 664 (1052)
-..+||+||+|+|||.+|+++|+.+. ... ..++.+||+.+.. .++....+...+..+ ......||||||+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~---~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSE---RPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSC---CEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCc---cchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 35699999999999999999999997 222 4788999999886 111112222222221 1112249999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc--ccCCccCcCcEEEEEecCCCCC
Q 001560 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--KRKSSCGIGPIAFVASAQSLEK 721 (1052)
Q Consensus 665 D~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~--~~~~~~~~~~V~vIattn~~~~ 721 (1052)
|++.+. ...........+.+.|+..+++-.- .........++++|+|+|--..
T Consensus 78 dKa~~~----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 78 DKAHPS----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp GGCSHT----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred hhcccc----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 999753 1112223344778888888886432 1222344568999999986543
No 256
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=3.6e-07 Score=105.43 Aligned_cols=180 Identities=18% Similarity=0.196 Sum_probs=111.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce----------
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~---------- 621 (1052)
.+.++.|.+...+.+.+.+.. ...+..+||+||+|+||+++|.++|+.+-+.....
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~--------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRS--------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 456788888877777664421 12234599999999999999999999986432100
Q ss_pred ------------------eeEEEEecc--ccc-----CCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCC
Q 001560 622 ------------------AHIVFVCCS--RLS-----LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEG 676 (1052)
Q Consensus 622 ------------------~~v~~v~~s--~L~-----~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~ 676 (1052)
..+.++... +-. .-..++++...+.+-.......+-|++|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 012222210 100 01123333333222222233567899999999873
Q ss_pred CCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhh
Q 001560 677 SQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (1052)
Q Consensus 677 ~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~ 756 (1052)
. .-.+.|+..+++... ..++|.+|+.++.+.+.+++ |.. .+.|++|+.++..+++....
T Consensus 155 ---~----~aanaLLK~LEepp~---------~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~-- 213 (365)
T PRK07471 155 ---A----NAANALLKVLEEPPA---------RSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAG-- 213 (365)
T ss_pred ---H----HHHHHHHHHHhcCCC---------CeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhc--
Confidence 1 234456666665432 35677788888888888877 654 79999999999988887642
Q ss_pred ccCCCCHHHHHHHhhhcCCC
Q 001560 757 RSLECSDEILLDVASKCDGY 776 (1052)
Q Consensus 757 ~~~~~sd~~l~~La~~teG~ 776 (1052)
....++.+..++..+.|-
T Consensus 214 --~~~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 214 --PDLPDDPRAALAALAEGS 231 (365)
T ss_pred --ccCCHHHHHHHHHHcCCC
Confidence 223344446677777773
No 257
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.73 E-value=6.3e-09 Score=124.90 Aligned_cols=97 Identities=24% Similarity=0.308 Sum_probs=71.4
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHH-----------cCCeEEEe
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA-----------CSLRFISV 909 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~-----------~~~~~i~v 909 (1052)
..+++++|.+...+.+++.+... .....++|++|++||||+++|++++.. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 45788999998888888776532 123467999999999999999999987 36799999
Q ss_pred echhhhh-----hhhcccH--------HHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 910 KGPELLN-----KYIGASE--------QAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 910 ~~s~l~~-----~yvGese--------~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
+|+.+-. ..+|..+ ..-..+|+.|.++ +||||||+.|..
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp~ 336 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEMPL 336 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhCCH
Confidence 9986532 2233211 1123577777655 999999999954
No 258
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=5.1e-08 Score=116.37 Aligned_cols=94 Identities=22% Similarity=0.267 Sum_probs=69.1
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe-------------
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------- 905 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~------------- 905 (1052)
.+..|++++|++.+.+.|+..+.. -+.+..+||+||||||||++|+++|+.++..
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 357899999999999999886652 1334579999999999999999999988542
Q ss_pred ---------------EEEeechhhhhhhhcccHHHHHHHHHHHhcC----CCEEEEEeCCCccC
Q 001560 906 ---------------FISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIA 950 (1052)
Q Consensus 906 ---------------~i~v~~s~l~~~yvGese~~ir~lf~~A~~~----~p~ILfiDEid~l~ 950 (1052)
++++++. ...+...++++++.+... ...|++|||+|.+.
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls 141 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS 141 (507)
T ss_pred CChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC
Confidence 2222221 112346788888887543 45699999999884
No 259
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.71 E-value=1.3e-07 Score=113.87 Aligned_cols=205 Identities=15% Similarity=0.160 Sum_probs=120.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s 630 (1052)
..+.++.|.+..+..+++.+..+.... .+|||+|++||||+++|+++...... ...+++.++|.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~-------------~pVLI~GE~GTGKe~lA~~IH~~S~r---~~~pfv~inC~ 272 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSD-------------ATVLILGESGTGKELVAQAIHQLSGR---RDFPFVAINCG 272 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC-------------CcEEEECCCCcCHHHHHHHHHHhcCc---CCCCEEEeccc
Confidence 456678899999999999887664333 67999999999999999999986432 22689999998
Q ss_pred cccCCchhh-HHHH------------hhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001560 631 RLSLEKGPI-IRQA------------LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1052)
Q Consensus 631 ~L~~~~~~~-~~~~------------l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~ 697 (1052)
.+.....+. +-.. -..+|+.+ ..+.|||||++.|- . .+...|.+.+++.
T Consensus 273 ~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp-----------~----~~Q~~Ll~~L~~~ 334 (526)
T TIGR02329 273 AIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMP-----------L----PLQTRLLRVLEER 334 (526)
T ss_pred cCChhHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCC-----------H----HHHHHHHHHHhcC
Confidence 875321110 0000 01122222 34689999999983 1 3334444444432
Q ss_pred c--cccCCccCcCcEEEEEecCCCC-------CCchhhhcCCCcc-eeeeCCCCCH--HHHHHHHHHHHhh----ccCCC
Q 001560 698 G--EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RSLEC 761 (1052)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~~-------~Ld~aL~r~gRF~-~~i~i~~Pd~--~eR~~IL~~~l~~----~~~~~ 761 (1052)
. .-+........+.+|++++..- .+.+.|.. |+. ..+++|+.-. ++...++.+++.+ .+..+
T Consensus 335 ~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 412 (526)
T TIGR02329 335 EVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPD 412 (526)
T ss_pred cEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 1 1000011112467888876531 12223322 333 2345544432 2334455555543 23457
Q ss_pred CHHHHHH-------HhhhcCCCCHHHHHHHHHHHHHH
Q 001560 762 SDEILLD-------VASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 762 sd~~l~~-------La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
+++.+.. |..+..--+-++|++++++++..
T Consensus 413 ~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 7777665 66665445788999999988744
No 260
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.71 E-value=9.2e-08 Score=102.34 Aligned_cols=90 Identities=27% Similarity=0.351 Sum_probs=69.9
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 916 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~ 916 (1052)
...++++.|.+..++.+.+.....+. -.+..++||+|+.|||||++++++..++ |+.+|++...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~- 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG- 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc-
Confidence 57899999999999999876653221 1356789999999999999999999877 8899999887764
Q ss_pred hhhcccHHHHHHHHHHHhcC-CCEEEEEeCCC
Q 001560 917 KYIGASEQAVRDIFSKATAA-APCLLFFDEFD 947 (1052)
Q Consensus 917 ~yvGese~~ir~lf~~A~~~-~p~ILfiDEid 947 (1052)
.+.++++..+.. .+=|||+|+..
T Consensus 93 --------~l~~l~~~l~~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 93 --------DLPELLDLLRDRPYKFILFCDDLS 116 (249)
T ss_pred --------cHHHHHHHHhcCCCCEEEEecCCC
Confidence 356677766543 33499999743
No 261
>PHA02244 ATPase-like protein
Probab=98.69 E-value=1.4e-07 Score=106.80 Aligned_cols=73 Identities=33% Similarity=0.425 Sum_probs=49.1
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCCeEEEeech----hhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP----ELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s----~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
.+.++||+||||||||++|+++|..++.+|+.++.. ++. .+++........-|-+|. ..+++|||||++.+.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~-G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p 194 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELK-GFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIP 194 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhc-ccccccccccchHHHHHh-hcCCEEEEeCcCcCCH
Confidence 345799999999999999999999999999998742 111 122211111112233332 2346999999999854
No 262
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.69 E-value=1.3e-08 Score=106.60 Aligned_cols=46 Identities=26% Similarity=0.470 Sum_probs=36.4
Q ss_pred CccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 842 ~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
+|.+|.|++..|..+.-... | ..++||+||||||||++|+.++..+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999875554 2 2489999999999999999999876
No 263
>PLN03025 replication factor C subunit; Provisional
Probab=98.69 E-value=2.8e-08 Score=113.22 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=77.0
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechh
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPE 913 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~ 913 (1052)
.+..++++.|.+++.+.|+..+... ...++||+||||||||++|+++|+++ ...+++++.++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 3468999999999999888765521 12369999999999999999999987 23467777765
Q ss_pred hhhhhhcccHHHHHHHHHH---Hh----cCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeee
Q 001560 914 LLNKYIGASEQAVRDIFSK---AT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIY 978 (1052)
Q Consensus 914 l~~~yvGese~~ir~lf~~---A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~ 978 (1052)
..+ -..+++.... .. .+.+.|++|||+|.+.. +.+....+.+....+++++++++
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----~aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----GAQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH----HHHHHHHHHHhcccCCceEEEEe
Confidence 432 1123333222 11 13467999999999964 22344455555544555555544
No 264
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=6.8e-08 Score=117.50 Aligned_cols=93 Identities=25% Similarity=0.360 Sum_probs=69.5
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcC----------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---------------- 903 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~---------------- 903 (1052)
+..|++++|++.+.+.++..+.. -+.+..+||+||+|||||++|+.+|+.+.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 47899999999999999988763 12234589999999999999999998874
Q ss_pred --------CeEEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 904 --------LRFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 904 --------~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
.+++.++++ .+.+-..+|++.+.+.. +...|+||||+|.|.
T Consensus 80 ~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt 132 (559)
T PRK05563 80 KAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS 132 (559)
T ss_pred HHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC
Confidence 234455442 12344568888877653 345699999999994
No 265
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=3.6e-07 Score=104.00 Aligned_cols=157 Identities=17% Similarity=0.256 Sum_probs=104.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccc------------------eeeEEEEecccc-cCCchhhHHHHhhhhHHH
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRL-SLEKGPIIRQALSNFISE 650 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~------------------~~~v~~v~~s~L-~~~~~~~~~~~l~~~f~~ 650 (1052)
+..+||+||+|+|||++|+++|+.+.+.... ...+..+....- ..-..++++..+..+...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 3559999999999999999999998753210 012333332211 112345556554444443
Q ss_pred hhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCC
Q 001560 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1052)
Q Consensus 651 a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~g 730 (1052)
......-|++||++|.+-. .-.+.|+..+++... .+.+|.+|+.++.+.+.+++
T Consensus 102 ~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEEPp~---------~~~fiL~t~~~~~ll~TI~S-- 155 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEEPSG---------DTVLLLISHQPSRLLPTIKS-- 155 (328)
T ss_pred cccCCCeEEEECChhhCCH---------------HHHHHHHHHHhCCCC---------CeEEEEEECChhhCcHHHHh--
Confidence 3444566999999999841 334566667776443 47888999999999999999
Q ss_pred CcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCC
Q 001560 731 RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1052)
Q Consensus 731 RF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s 777 (1052)
|.. .+.|++|+.++..+.+..... ..+++....++....|-.
T Consensus 156 Rc~-~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 156 RCQ-QQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSP 197 (328)
T ss_pred hce-eeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCH
Confidence 776 589999999988877765321 234455556667777743
No 266
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.69 E-value=2.3e-07 Score=111.56 Aligned_cols=206 Identities=16% Similarity=0.136 Sum_probs=119.2
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhcc-----CccceeeEE
Q 001560 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH-----HKDLVAHIV 625 (1052)
Q Consensus 551 ~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~-----~~~~~~~v~ 625 (1052)
..+.++.|.+..+..+++.+..+.... .+|||+|++||||+++|+++...+.. ......+++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~-------------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv 282 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSS-------------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 282 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC-------------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeE
Confidence 346678999999999999887664333 67999999999999999999986210 112236899
Q ss_pred EEecccccCCchhhH-HHHh------------hhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001560 626 FVCCSRLSLEKGPII-RQAL------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1052)
Q Consensus 626 ~v~~s~L~~~~~~~~-~~~l------------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~ 692 (1052)
.++|..+.....+.. -..- ..+|+.| ..+.|||||++.|- . .+...|.+
T Consensus 283 ~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp-----------~----~~Q~kLl~ 344 (538)
T PRK15424 283 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMP-----------L----PLQTRLLR 344 (538)
T ss_pred EeecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCC-----------H----HHHHHHHh
Confidence 999998753221110 0000 0122222 34689999999883 1 33344444
Q ss_pred HHHHhc--cccCCccCcCcEEEEEecCCC-CC------CchhhhcCCCcceeeeCCCCCHHHHH----HHHHHHHhh---
Q 001560 693 IMDEYG--EKRKSSCGIGPIAFVASAQSL-EK------IPQSLTSSGRFDFHVQLPAPAASERK----AILEHEIQR--- 756 (1052)
Q Consensus 693 ~ld~~~--~~~~~~~~~~~V~vIattn~~-~~------Ld~aL~r~gRF~~~i~i~~Pd~~eR~----~IL~~~l~~--- 756 (1052)
.+++-. .-+.......++.+|++++.. +. +.+.|.. |+. .+.+..|...+|. .++++++++
T Consensus 345 ~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~ 421 (538)
T PRK15424 345 VLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLA 421 (538)
T ss_pred hhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHH
Confidence 444321 100101111256888888653 11 1222222 332 3445555555543 455566554
Q ss_pred -ccCCCCHHHH-------HHHhhhcCCCCHHHHHHHHHHHHH
Q 001560 757 -RSLECSDEIL-------LDVASKCDGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 757 -~~~~~sd~~l-------~~La~~teG~s~~DL~~Lv~~A~~ 790 (1052)
.+..++++.+ ..|..+..--+-++|++++++++.
T Consensus 422 ~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 422 ALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 3445666554 344444433477899999999875
No 267
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=5.8e-08 Score=115.08 Aligned_cols=94 Identities=17% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcC---------------
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--------------- 903 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~--------------- 903 (1052)
.+..|++++|++.+.+.|+..+.. -+.+..+||+||+|+|||++|+.+|+.+.
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 347899999999999999877662 13345799999999999999999998652
Q ss_pred ---------CeEEEeechhhhhhhhcccHHHHHHHHHHHhcC----CCEEEEEeCCCccC
Q 001560 904 ---------LRFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIA 950 (1052)
Q Consensus 904 ---------~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~----~p~ILfiDEid~l~ 950 (1052)
.+++++++++- .+-..+|++.+.+... ...|++|||+|.+.
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls 129 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS 129 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC
Confidence 24566655421 2345688888777433 45699999999884
No 268
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.2e-07 Score=113.80 Aligned_cols=92 Identities=23% Similarity=0.337 Sum_probs=65.7
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|++++++.|...+... +.+..+||+||||||||++|+++|+.+..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 478999999999999998887631 22233699999999999999999998742
Q ss_pred --------eEEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCcc
Q 001560 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSI 949 (1052)
Q Consensus 905 --------~~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l 949 (1052)
.++.+++++ ..+-..+|++.+.+.. +.+.|++|||+|.+
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l 128 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM 128 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc
Confidence 144444421 1123456666555532 35679999999977
No 269
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=9.4e-08 Score=115.84 Aligned_cols=93 Identities=17% Similarity=0.338 Sum_probs=65.3
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|++.+.+.|+..+... +.+..+||+||+|||||++|+++|+.+..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 468999999999999999888621 22334799999999999999999988753
Q ss_pred -----------eEEEeechhhhhhhhcccHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 -----------~~i~v~~s~l~~~yvGese~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
++++++++.. .+-..+|++-+.+. .+...|++|||+|.+.
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt 131 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT 131 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC
Confidence 2333333211 11344555555442 2345699999999994
No 270
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.65 E-value=3e-07 Score=94.75 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=76.3
Q ss_pred cccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCC
Q 001560 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1052)
Q Consensus 556 l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~ 635 (1052)
+.|.+..+.++++.+..+... +.+|||+|++||||+.+|+++.+... ....+++.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-------------~~pVlI~GE~GtGK~~lA~~IH~~s~---r~~~pfi~vnc~~~~~~ 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-------------DLPVLITGETGTGKELLARAIHNNSP---RKNGPFISVNCAALPEE 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-------------TS-EEEECSTTSSHHHHHHHHHHCST---TTTS-EEEEETTTS-HH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-------------CCCEEEEcCCCCcHHHHHHHHHHhhh---cccCCeEEEehhhhhcc
Confidence 457788999999988776533 36799999999999999999998433 22378999999987532
Q ss_pred chhh-HHH-----------HhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 001560 636 KGPI-IRQ-----------ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (1052)
Q Consensus 636 ~~~~-~~~-----------~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (1052)
..+. +-. .-..++..| ..++|||||++.|-+ .+...|.+.++.-. ..+
T Consensus 65 ~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~I~~L~~---------------~~Q~~Ll~~l~~~~~~~~g 126 (168)
T PF00158_consen 65 LLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFLDEIEDLPP---------------ELQAKLLRVLEEGKFTRLG 126 (168)
T ss_dssp HHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEEETGGGS-H---------------HHHHHHHHHHHHSEEECCT
T ss_pred hhhhhhhccccccccccccccCCceeec---cceEEeecchhhhHH---------------HHHHHHHHHHhhchhcccc
Confidence 2110 000 001233333 456999999999842 34444555555321 111
Q ss_pred CCccCcCcEEEEEecCC
Q 001560 702 KSSCGIGPIAFVASAQS 718 (1052)
Q Consensus 702 ~~~~~~~~V~vIattn~ 718 (1052)
.......++.+|++|+.
T Consensus 127 ~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 127 SDKPVPVDVRIIASTSK 143 (168)
T ss_dssp SSSEEE--EEEEEEESS
T ss_pred ccccccccceEEeecCc
Confidence 11111236889998884
No 271
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.65 E-value=5e-08 Score=111.65 Aligned_cols=71 Identities=32% Similarity=0.519 Sum_probs=49.8
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhh--hhcccHHHHH------------HHHHHHhcCCCEEEE
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQAVR------------DIFSKATAAAPCLLF 942 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~--yvGese~~ir------------~lf~~A~~~~p~ILf 942 (1052)
..+++||-||||||||++|+.+|+.++.+|+.+.+..-+.. .+|...-... -+|...+ +|+|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 34689999999999999999999999999999998644321 1222211111 1112211 4999
Q ss_pred EeCCCccCC
Q 001560 943 FDEFDSIAP 951 (1052)
Q Consensus 943 iDEid~l~~ 951 (1052)
+|||+...+
T Consensus 118 ~DEInra~p 126 (329)
T COG0714 118 LDEINRAPP 126 (329)
T ss_pred EeccccCCH
Confidence 999999865
No 272
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.65 E-value=1.6e-07 Score=115.46 Aligned_cols=62 Identities=26% Similarity=0.501 Sum_probs=48.8
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc----------CCeEEEe
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 909 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~----------~~~~i~v 909 (1052)
+..+++++|.+...+.+...+.. ..+.+++|+||||||||++|++++... +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 46889999999988877655532 123569999999999999999998765 3578999
Q ss_pred echhh
Q 001560 910 KGPEL 914 (1052)
Q Consensus 910 ~~s~l 914 (1052)
++..+
T Consensus 217 ~~~~l 221 (615)
T TIGR02903 217 DGTTL 221 (615)
T ss_pred echhc
Confidence 88754
No 273
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=1.1e-07 Score=114.19 Aligned_cols=93 Identities=17% Similarity=0.303 Sum_probs=65.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|++.+.+.+...+.. -+.+..+||+||+|||||++|+++|+.+..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 46899999999999999887762 122345899999999999999999997753
Q ss_pred ---------eEEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ---------~~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
.++.+++..- .| -..++++.+.+.. +...|+||||+|.+.
T Consensus 80 ~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls 132 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS 132 (546)
T ss_pred HHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc
Confidence 2333333211 11 2345666655532 345699999999984
No 274
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.64 E-value=6.5e-09 Score=100.37 Aligned_cols=114 Identities=23% Similarity=0.291 Sum_probs=59.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc------cccCCchhhHHHHhhhhHHHhhccC---CeEEEEe
Q 001560 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------RLSLEKGPIIRQALSNFISEALDHA---PSIVIFD 662 (1052)
Q Consensus 592 ~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s------~L~~~~~~~~~~~l~~~f~~a~~~~---PsIL~ID 662 (1052)
|+||.|+||+|||++|+++|+.++ ..+..+.|. ++.|...-+.+. ..|. .... ..|+++|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~--~~~GPif~~ill~D 69 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------LSFKRIQFTPDLLPSDILGFPVYDQET---GEFE--FRPGPIFTNILLAD 69 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT--HHHHHEEEEEETTT---TEEE--EEE-TT-SSEEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------CceeEEEecCCCCcccceeeeeeccCC---CeeE--eecChhhhceeeec
Confidence 699999999999999999999988 444555442 222221111000 0000 0011 2499999
Q ss_pred ccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc--CCccCcCcEEEEEecCCCC-----CCchhhhcCCCcc
Q 001560 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR--KSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFD 733 (1052)
Q Consensus 663 EiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~--~~~~~~~~V~vIattn~~~-----~Ld~aL~r~gRF~ 733 (1052)
||+..-+ +....|++.|.+..-.. ..-.-..+..||||.|+.+ .++.+++. ||-
T Consensus 70 EiNrapp---------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 70 EINRAPP---------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp TGGGS-H---------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ccccCCH---------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 9988642 55667777777654211 0111123688999999876 57777777 763
No 275
>PHA02244 ATPase-like protein
Probab=98.64 E-value=2.1e-07 Score=105.44 Aligned_cols=126 Identities=16% Similarity=0.225 Sum_probs=74.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc----cccCCchhhHHHHhh-hhHHHhhccCCeEEEEeccc
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS----RLSLEKGPIIRQALS-NFISEALDHAPSIVIFDNLD 665 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s----~L~~~~~~~~~~~l~-~~f~~a~~~~PsIL~IDEiD 665 (1052)
.++||+||||||||++|+++|+.++ .+++.+++. .+.+..... ..+. .-+-.+. ..+.+|+|||++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg------~pfv~In~l~d~~~L~G~i~~~--g~~~dgpLl~A~-~~GgvLiLDEId 190 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALD------LDFYFMNAIMDEFELKGFIDAN--GKFHETPFYEAF-KKGGLFFIDEID 190 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecChHHHhhccccccc--ccccchHHHHHh-hcCCEEEEeCcC
Confidence 5699999999999999999999987 445555431 111100000 0111 1122222 356799999998
Q ss_pred hhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cccCCccCcCcEEEEEecCCC-----------CCCchhhhcCCCc
Q 001560 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRKSSCGIGPIAFVASAQSL-----------EKIPQSLTSSGRF 732 (1052)
Q Consensus 666 ~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~--~~~~~~~~~~~V~vIattn~~-----------~~Ld~aL~r~gRF 732 (1052)
.+.+ .....|...++... ..........++.+|+|+|.. ..++++++. ||
T Consensus 191 ~a~p---------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF 253 (383)
T PHA02244 191 ASIP---------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF 253 (383)
T ss_pred cCCH---------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc
Confidence 8732 22233333333210 001111122468999999973 467889988 99
Q ss_pred ceeeeCCCCCH
Q 001560 733 DFHVQLPAPAA 743 (1052)
Q Consensus 733 ~~~i~i~~Pd~ 743 (1052)
. .+++..|+.
T Consensus 254 v-~I~~dyp~~ 263 (383)
T PHA02244 254 A-PIEFDYDEK 263 (383)
T ss_pred E-EeeCCCCcH
Confidence 7 789998874
No 276
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.64 E-value=1.9e-07 Score=107.10 Aligned_cols=98 Identities=18% Similarity=0.357 Sum_probs=67.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcC-----CeEEEeechhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPEL 914 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~-----~~~i~v~~s~l 914 (1052)
+..++++.|.+++++.+...+... ...++||+||||||||++|+++|+.+. .+++.++++++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 467899999999999998876521 123699999999999999999999873 35788888776
Q ss_pred hhhh-------------hcc-------cHHHHHHHHHHHhc-----CCCEEEEEeCCCccC
Q 001560 915 LNKY-------------IGA-------SEQAVRDIFSKATA-----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 915 ~~~y-------------vGe-------se~~ir~lf~~A~~-----~~p~ILfiDEid~l~ 950 (1052)
.... .+. ....++.+.+.+.. ..+.+|+|||+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~ 138 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR 138 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC
Confidence 4321 111 11233333333322 234699999999884
No 277
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.64 E-value=6.2e-07 Score=95.90 Aligned_cols=157 Identities=18% Similarity=0.305 Sum_probs=114.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCcc----ce-------------------eeEEEEecccccCCchhhHHHHhhhh
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKD----LV-------------------AHIVFVCCSRLSLEKGPIIRQALSNF 647 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~----~~-------------------~~v~~v~~s~L~~~~~~~~~~~l~~~ 647 (1052)
.|+++|||+|+||-|.+.++-+++.-... .. .+.+.+++++........ ++++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvV----iQel 110 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVV----IQEL 110 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHH----HHHH
Confidence 46999999999999999999998762100 00 122233444433333233 3444
Q ss_pred HHHhhccC---------CeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCC
Q 001560 648 ISEALDHA---------PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS 718 (1052)
Q Consensus 648 f~~a~~~~---------PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~ 718 (1052)
+.+....+ --+++|-|+|.|.. .-...|.+-|+.|.. .+.+|..||+
T Consensus 111 lKevAQt~qie~~~qr~fKvvvi~ead~LT~---------------dAQ~aLRRTMEkYs~---------~~RlIl~cns 166 (351)
T KOG2035|consen 111 LKEVAQTQQIETQGQRPFKVVVINEADELTR---------------DAQHALRRTMEKYSS---------NCRLILVCNS 166 (351)
T ss_pred HHHHHhhcchhhccccceEEEEEechHhhhH---------------HHHHHHHHHHHHHhc---------CceEEEEecC
Confidence 44332222 24899999999852 234567788888875 4789999999
Q ss_pred CCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCH
Q 001560 719 LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (1052)
Q Consensus 719 ~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~ 778 (1052)
...+-+++++ |.- .+.+|.|+.++...++...+.+.++.++.+.+..+|..++|...
T Consensus 167 ~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 167 TSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLR 223 (351)
T ss_pred cccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHH
Confidence 9999999998 543 58999999999999999999999999999999999999988533
No 278
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.63 E-value=2.6e-07 Score=103.67 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=59.4
Q ss_pred CCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecC------------CCCCC
Q 001560 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ------------SLEKI 722 (1052)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn------------~~~~L 722 (1052)
-|+||||||+|.|- . ....+|.+.++.-.. |++++| || +++.+
T Consensus 278 vpGVLFIDEvHmLD-----------i----EcFsfLnralEs~~s---------PiiIlA-TNRg~~~irGt~~~sphGi 332 (398)
T PF06068_consen 278 VPGVLFIDEVHMLD-----------I----ECFSFLNRALESELS---------PIIILA-TNRGITKIRGTDIISPHGI 332 (398)
T ss_dssp EE-EEEEESGGGSB-----------H----HHHHHHHHHHTSTT-----------EEEEE-ES-SEEE-BTTS-EEETT-
T ss_pred ecceEEecchhhcc-----------H----HHHHHHHHHhcCCCC---------cEEEEe-cCceeeeccCccCcCCCCC
Confidence 37899999999882 1 445667676664222 455554 44 24567
Q ss_pred chhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCC
Q 001560 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1052)
Q Consensus 723 d~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s 777 (1052)
|..|+. |+- .+...+++.++..+|++..++..+..++++.+..|+......+
T Consensus 333 P~DlLD--Rll-II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~S 384 (398)
T PF06068_consen 333 PLDLLD--RLL-IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETS 384 (398)
T ss_dssp -HHHHT--TEE-EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-
T ss_pred CcchHh--hcE-EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhcc
Confidence 778877 665 7889999999999999999999999999999888776544333
No 279
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.63 E-value=1.4e-08 Score=122.01 Aligned_cols=97 Identities=21% Similarity=0.365 Sum_probs=71.3
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh-
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN- 916 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~- 916 (1052)
..+++++|.+...+.+.+.+... .....++|++|++||||+++|++++... +.||+.++|..+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 56788999998888887777532 1234679999999999999999999875 67999999976532
Q ss_pred ----hhhcccH--------HHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 917 ----KYIGASE--------QAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 917 ----~yvGese--------~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
..+|..+ ..-..+|+.|.++ .||||||+.|..
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp~ 321 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEMPL 321 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhCCH
Confidence 2233211 1123567777655 999999999954
No 280
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.4e-07 Score=113.93 Aligned_cols=93 Identities=20% Similarity=0.344 Sum_probs=67.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe--------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------------- 905 (1052)
+..|++++|++.+.+.+...+.. -+.+..+||+||||||||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 46899999999999999888762 1223457999999999999999999998542
Q ss_pred ----------EEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 ----------~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
++.++++. ...-..+|++.+.+.. +...|+||||+|.+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls 132 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS 132 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC
Confidence 22232211 1223567888877743 345699999999984
No 281
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.63 E-value=2.5e-07 Score=111.83 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=84.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEE---EecccccCCchhh-H--HHHhhhhHHHhhccCCeEEEE
Q 001560 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF---VCCSRLSLEKGPI-I--RQALSNFISEALDHAPSIVIF 661 (1052)
Q Consensus 588 ~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~---v~~s~L~~~~~~~-~--~~~l~~~f~~a~~~~PsIL~I 661 (1052)
....|+||+|+||||||++|+++++..... .+.. .++..+......+ . +..++. ........++++|
T Consensus 234 r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~--G~l~~A~~Gil~i 306 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSAVGLTAAVTRDPETREFTLEG--GALVLADNGVCCI 306 (509)
T ss_pred cccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCcCCccccceEccCcceEEecC--ccEEecCCCEEEE
Confidence 334589999999999999999999976421 1111 1222222111000 0 000000 0011124569999
Q ss_pred eccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---cc-cCCccCcCcEEEEEecCCCC-------------CCch
Q 001560 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE-------------KIPQ 724 (1052)
Q Consensus 662 DEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~V~vIattn~~~-------------~Ld~ 724 (1052)
||+|.+-. .....|.+.|+.-. .+ +....-..+..+|||+|+.+ .+++
T Consensus 307 DEi~~l~~---------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~ 371 (509)
T smart00350 307 DEFDKMDD---------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPA 371 (509)
T ss_pred echhhCCH---------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCCh
Confidence 99999831 33445555565421 11 11111123588999999753 5889
Q ss_pred hhhcCCCcceee-eCCCCCHHHHHHHHHHHHh
Q 001560 725 SLTSSGRFDFHV-QLPAPAASERKAILEHEIQ 755 (1052)
Q Consensus 725 aL~r~gRF~~~i-~i~~Pd~~eR~~IL~~~l~ 755 (1052)
++++ ||+..+ ....|+.+...+|+++.+.
T Consensus 372 ~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 372 PILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred HHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9999 998655 5578899999999887654
No 282
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.63 E-value=2.5e-08 Score=103.64 Aligned_cols=121 Identities=19% Similarity=0.264 Sum_probs=85.6
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc-C----CeEEEeechhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S----LRFISVKGPEL 914 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~-~----~~~i~v~~s~l 914 (1052)
+..+.||+|.++....+.-.... | .-.++++.||||||||+-+.++|+++ | --+.++|+++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 46788999999999888765542 1 12479999999999999999999987 3 34667777763
Q ss_pred hhhhhcccHHHHHHHHHHHhcC-CC---EEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeee
Q 001560 915 LNKYIGASEQAVRDIFSKATAA-AP---CLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFW 980 (1052)
Q Consensus 915 ~~~yvGese~~ir~lf~~A~~~-~p---~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~ 980 (1052)
.+ +. .-++--..|.+-+-. +| .|+++||+|++.. +.+.+.+|.+...+++++|..+|-.
T Consensus 90 RG--ID-vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~----gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 90 RG--ID-VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA----GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred cc--cH-HHHHHHHHHHHhhccCCCCceeEEEeeccchhhh----HHHHHHHHHHHHHcccchhhhhhcc
Confidence 22 11 112223455544332 23 4999999999965 5677888888888888887776654
No 283
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.62 E-value=1e-06 Score=104.83 Aligned_cols=235 Identities=19% Similarity=0.209 Sum_probs=141.3
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhc----cCccceeeEEEEecc
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE----HHKDLVAHIVFVCCS 630 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~----~~~~~~~~v~~v~~s 630 (1052)
.|.+.+..+.+|-..+...+... ..++.+.+.|-||||||..++.+.+.|. ++......++.+|+-
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~----------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm 466 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ----------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL 466 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC----------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce
Confidence 45567777788877776665432 1223699999999999999999999876 222223456666665
Q ss_pred cccCC--------------chhh--HHHHhhhhHHHh-hccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001560 631 RLSLE--------------KGPI--IRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1052)
Q Consensus 631 ~L~~~--------------~~~~--~~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ 693 (1052)
.|.+. .... .-..+...|... ....++||+|||+|.|+.. -...|..+
T Consensus 467 ~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr---------------~QdVlYn~ 531 (767)
T KOG1514|consen 467 RLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR---------------SQDVLYNI 531 (767)
T ss_pred eecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc---------------cHHHHHHH
Confidence 54431 1100 011122223211 2245789999999999841 12345566
Q ss_pred HHHhccccCCccCcCcEEEEEecCCCCCCchhhhc--CCCcc-eeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHh
Q 001560 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS--SGRFD-FHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 770 (1052)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r--~gRF~-~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La 770 (1052)
++....... .++||+.+|..+.....|.. +.|.+ ..+.|.+++..|.++|+...+... ..+..+.++.+|
T Consensus 532 fdWpt~~~s------KLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielva 604 (767)
T KOG1514|consen 532 FDWPTLKNS------KLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVA 604 (767)
T ss_pred hcCCcCCCC------ceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHH
Confidence 665443322 58888888875533222221 11444 358999999999999999888765 335556666665
Q ss_pred hhcCCCC--HHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccccccccc
Q 001560 771 SKCDGYD--AYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1052)
Q Consensus 771 ~~teG~s--~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1052)
+.-...+ .+....+|++|..-+-.+.... .......++..++.+|+.++..
T Consensus 605 rkVAavSGDaRraldic~RA~Eia~~~~~~~----k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 605 RKVAAVSGDARRALDICRRAAEIAEERNVKG----KLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhhhcccc----cccccceeehHHHHHHHHHHhh
Confidence 5543333 3445567888887776664311 1112245677788888877543
No 284
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=9.7e-08 Score=119.92 Aligned_cols=93 Identities=17% Similarity=0.322 Sum_probs=65.2
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++|+|++.+++.|+..+.. -+.+..+||+||+|||||++|+++|+.+.+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 46899999999999999888762 122334799999999999999999999853
Q ss_pred -----------eEEEeechhhhhhhhcccHHHHHHHHHHH----hcCCCEEEEEeCCCccC
Q 001560 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 -----------~~i~v~~s~l~~~yvGese~~ir~lf~~A----~~~~p~ILfiDEid~l~ 950 (1052)
.|+.++.... -.-..+|++-+.+ ......|+||||+|.|.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt 133 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT 133 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC
Confidence 1333333211 1123455544433 23466799999999994
No 285
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.3e-07 Score=115.60 Aligned_cols=93 Identities=17% Similarity=0.316 Sum_probs=67.6
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe--------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------------- 905 (1052)
+..|++++|++++++.|...+.. -+.+..+||+||+|+|||++|+++|+.+...
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 46899999999999999988762 1233457999999999999999999997431
Q ss_pred ----------EEEeechhhhhhhhcccHHHHHHHHHHHhcC----CCEEEEEeCCCccC
Q 001560 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIA 950 (1052)
Q Consensus 906 ----------~i~v~~s~l~~~yvGese~~ir~lf~~A~~~----~p~ILfiDEid~l~ 950 (1052)
++++++.. ...-..+|++.+.+... ...|++|||+|.+.
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt 132 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS 132 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC
Confidence 33333321 12234577777766432 34699999999984
No 286
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.62 E-value=2.1e-08 Score=114.39 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=60.5
Q ss_pred ccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhh-----h
Q 001560 847 GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----Y 918 (1052)
Q Consensus 847 ~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~-----y 918 (1052)
+|.+...+.+.+.+... .....++||+|++||||+++|++++... +.+|+.++|..+... .
T Consensus 2 iG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 45555555555544422 1335679999999999999999999877 479999999765321 1
Q ss_pred hcccH-------HHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 919 IGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 919 vGese-------~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
+|... ..-...|+.|..+ +||||||+.|..
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~gG---tL~Ldei~~L~~ 107 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERADGG---TLFLDELATASL 107 (329)
T ss_pred hccccccccCcccccCCchhhCCCC---EEEeCChHhCCH
Confidence 22111 1122356666544 999999999954
No 287
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=7.8e-08 Score=116.95 Aligned_cols=93 Identities=16% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|++.+.+.|+..+..- +.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 468999999999999999887631 23345799999999999999999998753
Q ss_pred --------------eEEEeechhhhhhhhcccHHHHHHHHHHHhcC----CCEEEEEeCCCccC
Q 001560 905 --------------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIA 950 (1052)
Q Consensus 905 --------------~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~----~p~ILfiDEid~l~ 950 (1052)
.++++++.+ ...-..+|++.+.+... ...|++|||+|.|.
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls 137 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT 137 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC
Confidence 133333221 12234677887776432 35699999999994
No 288
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1e-07 Score=115.13 Aligned_cols=93 Identities=16% Similarity=0.252 Sum_probs=65.0
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe--------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------------- 905 (1052)
+..|++|+|++.+++.|...+..- +....+||+||+|||||++|+++|+.+...
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 468999999999999999887621 223468999999999999999999998542
Q ss_pred ----------EEEeechhhhhhhhcccHHHHHHHHHHH----hcCCCEEEEEeCCCccC
Q 001560 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 ----------~i~v~~s~l~~~yvGese~~ir~lf~~A----~~~~p~ILfiDEid~l~ 950 (1052)
++++++..- ..-..+|.+.+.+ ..+...|+||||+|.+.
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt 132 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT 132 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC
Confidence 444443210 1122344443333 23455799999999994
No 289
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.61 E-value=7e-08 Score=107.08 Aligned_cols=150 Identities=22% Similarity=0.358 Sum_probs=86.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhh-------ccCCeEEEEe
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL-------DHAPSIVIFD 662 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~-------~~~PsIL~ID 662 (1052)
..++||+||+|||||++++.+-+.+.... ..+..++++... ....+++.++..++... ..+..|+|||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~---~~~~~~~~s~~T--ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDK---YLVITINFSAQT--TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCC---EEEEEEES-TTH--HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccc---cceeEeeccCCC--CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 37899999999999999998876654221 223445554422 22333333333322211 1234599999
Q ss_pred ccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH---hccccCCccCcCcEEEEEecCCCC---CCchhhhcCCCcceee
Q 001560 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE---YGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDFHV 736 (1052)
Q Consensus 663 EiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~---~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~r~gRF~~~i 736 (1052)
|++...+ +..+.+ ...+.|...++. +..+...+....++.++|++++.. .+++.+.| .|. .+
T Consensus 108 DlN~p~~---d~ygtq------~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~ 175 (272)
T PF12775_consen 108 DLNMPQP---DKYGTQ------PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-IL 175 (272)
T ss_dssp TTT-S------TTS--------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EE
T ss_pred ccCCCCC---CCCCCc------CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EE
Confidence 9987653 333333 234445555543 332333345556789999988643 46777777 665 78
Q ss_pred eCCCCCHHHHHHHHHHHHhh
Q 001560 737 QLPAPAASERKAILEHEIQR 756 (1052)
Q Consensus 737 ~i~~Pd~~eR~~IL~~~l~~ 756 (1052)
.++.|+.+....|+..++..
T Consensus 176 ~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E----TCCHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhh
Confidence 99999999999998887764
No 290
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.59 E-value=4e-07 Score=111.54 Aligned_cols=144 Identities=23% Similarity=0.250 Sum_probs=86.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhH--HHHhh-h--hHHH--hhccCCeEEEEe
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII--RQALS-N--FISE--ALDHAPSIVIFD 662 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~--~~~l~-~--~f~~--a~~~~PsIL~ID 662 (1052)
-+||||.|+||||||++|+++++.+... .+++.+.+......-.+.+ ...+. . .+.. ......++||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lD 91 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVD 91 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEecc
Confidence 3789999999999999999999987531 2344444321111111111 11010 0 0000 011234699999
Q ss_pred ccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---c-ccCCccCcCcEEEEEecCCCC---CCchhhhcCCCccee
Q 001560 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---E-KRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDFH 735 (1052)
Q Consensus 663 EiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~---~-~~~~~~~~~~V~vIattn~~~---~Ld~aL~r~gRF~~~ 735 (1052)
|++.+-+ .+...|.+.|+.-. . .+........+.+|+|+|..+ .+++.|.. ||..+
T Consensus 92 Ei~rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~ 154 (589)
T TIGR02031 92 MANLLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALH 154 (589)
T ss_pred chhhCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCe
Confidence 9998842 44555666665422 1 011111122588999999865 68889998 99987
Q ss_pred eeCC-CCCHHHHHHHHHHHH
Q 001560 736 VQLP-APAASERKAILEHEI 754 (1052)
Q Consensus 736 i~i~-~Pd~~eR~~IL~~~l 754 (1052)
+.+. .|+.++|.+|++.++
T Consensus 155 v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eecCCCCCHHHHHHHHHHHH
Confidence 7665 457788999988754
No 291
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.59 E-value=1.8e-06 Score=95.40 Aligned_cols=204 Identities=18% Similarity=0.231 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhcC-CCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc---ceeeEEEEecccccC---
Q 001560 562 TASDVINRIKVLLS-PDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD---LVAHIVFVCCSRLSL--- 634 (1052)
Q Consensus 562 ~i~~i~~~l~~ll~-~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~---~~~~v~~v~~s~L~~--- 634 (1052)
.-.++.+++..++. |. .....++||+|++|.|||++++.+++.-..... ...+++++.+-.-.+
T Consensus 41 ~A~~~L~~L~~Ll~~P~---------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 41 RAKEALDRLEELLEYPK---------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred HHHHHHHHHHHHHhCCc---------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 34556666654432 22 222345999999999999999999986542211 123566665422110
Q ss_pred -------------CchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 001560 635 -------------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1052)
Q Consensus 635 -------------~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1052)
.......++-..........++-+|+|||+|.++.. .......+++.|..+-.++.-
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~NeL~i-- 181 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGNELQI-- 181 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhhccCC--
Confidence 011111222222333344457779999999998732 222233555555444333221
Q ss_pred CCccCcCcEEEEEecCCCCC--CchhhhcCCCcceeeeCCCCCH-HHHHHHHHHHHhhccC----CC-CHHHHHHHhhhc
Q 001560 702 KSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSL----EC-SDEILLDVASKC 773 (1052)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~--Ld~aL~r~gRF~~~i~i~~Pd~-~eR~~IL~~~l~~~~~----~~-sd~~l~~La~~t 773 (1052)
+++.+||..-... -|+.+.+ ||. .+.+|.... ++-..++..+-....+ .+ +.+....+-..+
T Consensus 182 -------piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s 251 (302)
T PF05621_consen 182 -------PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERS 251 (302)
T ss_pred -------CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHc
Confidence 3566665443332 3566777 998 567776544 3455666665543222 22 344567888899
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 001560 774 DGYDAYDLEILVDRTVHAAVGR 795 (1052)
Q Consensus 774 eG~s~~DL~~Lv~~A~~~a~~r 795 (1052)
+|..| ++..++..|+..|+..
T Consensus 252 ~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 252 EGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCchH-HHHHHHHHHHHHHHhc
Confidence 99655 7888888888777654
No 292
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.59 E-value=4.8e-07 Score=105.13 Aligned_cols=136 Identities=18% Similarity=0.236 Sum_probs=77.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEec------cccc-CCchhh-----HHHHhhhhHHHhhc--cCC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC------SRLS-LEKGPI-----IRQALSNFISEALD--HAP 656 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~------s~L~-~~~~~~-----~~~~l~~~f~~a~~--~~P 656 (1052)
++++|+||||||||++|+.+|..+...... ..+..+.. .++. +..... ....+.+++..|.. ..|
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~-~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAP-QRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCccc-ceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 679999999999999999999988532111 11112211 1222 111110 11234445555543 357
Q ss_pred eEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh------------ccc-cCCccCcCcEEEEEecCCCC---
Q 001560 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY------------GEK-RKSSCGIGPIAFVASAQSLE--- 720 (1052)
Q Consensus 657 sIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~------------~~~-~~~~~~~~~V~vIattn~~~--- 720 (1052)
.+|||||+++.-.. ++...+..+++.- ... ........++.+|||+|..+
T Consensus 274 ~vliIDEINRani~--------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 274 YVFIIDEINRANLS--------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred cEEEEehhhccCHH--------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 89999999875311 2222222222211 000 01123345899999999877
Q ss_pred -CCchhhhcCCCcceeeeCCC-CCHH
Q 001560 721 -KIPQSLTSSGRFDFHVQLPA-PAAS 744 (1052)
Q Consensus 721 -~Ld~aL~r~gRF~~~i~i~~-Pd~~ 744 (1052)
.+|.+|+| ||. .+++.+ ++..
T Consensus 340 ~~lD~AlrR--RF~-fi~i~p~~~~~ 362 (459)
T PRK11331 340 AVVDYALRR--RFS-FIDIEPGFDTP 362 (459)
T ss_pred hhccHHHHh--hhh-eEEecCCCChH
Confidence 78999999 997 566654 3433
No 293
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.59 E-value=6.1e-07 Score=111.14 Aligned_cols=146 Identities=19% Similarity=0.235 Sum_probs=83.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhcc-----------Cc------------------cceeeEEEEecccccCCchhh--
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEH-----------HK------------------DLVAHIVFVCCSRLSLEKGPI-- 639 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~-----------~~------------------~~~~~v~~v~~s~L~~~~~~~-- 639 (1052)
++|||.|++|||||++|+++++.+.. .. ....+++.+.++.....-.|.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 67999999999999999999998720 00 001233333333211100111
Q ss_pred HHHHhhh---hHHH--hhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCcCcE
Q 001560 640 IRQALSN---FISE--ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPI 710 (1052)
Q Consensus 640 ~~~~l~~---~f~~--a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V 710 (1052)
+.+.+.. .+.. .......+|||||++.+-. .+...|...++.-. ..+........+
T Consensus 106 ~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~---------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~ 170 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD---------------HLVDVLLDAAAMGVNRVEREGLSVSHPARF 170 (633)
T ss_pred HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH---------------HHHHHHHHHHhcCCEEEEECCceeeecCCe
Confidence 1111100 0000 0111345999999999841 34555666665321 111111112358
Q ss_pred EEEEecCCC-CCCchhhhcCCCcceeeeCCCCC-HHHHHHHHHHH
Q 001560 711 AFVASAQSL-EKIPQSLTSSGRFDFHVQLPAPA-ASERKAILEHE 753 (1052)
Q Consensus 711 ~vIattn~~-~~Ld~aL~r~gRF~~~i~i~~Pd-~~eR~~IL~~~ 753 (1052)
.+|+|+|.. ..+++.|.. ||..++.++.+. .+++.+|++..
T Consensus 171 ~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 171 VLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred EEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 899998864 358888988 999888888774 57788887653
No 294
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.57 E-value=1.2e-07 Score=117.62 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=79.0
Q ss_pred CCCccccccchhHHH---HHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhh
Q 001560 840 RSGWDDVGGLTDIQN---AIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~---~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~ 916 (1052)
+..+++++|++++.. .+++.+.. ....++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 467889999998874 45555441 122479999999999999999999999999998887531
Q ss_pred hhhcccHHHHHHHHHHHh-----cCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccC
Q 001560 917 KYIGASEQAVRDIFSKAT-----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVG 983 (1052)
Q Consensus 917 ~yvGese~~ir~lf~~A~-----~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~ 983 (1052)
..+.+++.++.+. .....+|||||+|.+.. ...+.++..+++....+|.+..++.
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-------~qQdaLL~~lE~g~IiLI~aTTenp 148 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-------AQQDALLPWVENGTITLIGATTENP 148 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-------HHHHHHHHHhcCceEEEEEecCCCh
Confidence 1123444444442 23456999999999843 2234555556665555555555543
No 295
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=2.9e-07 Score=112.93 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=69.1
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe--------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------------- 905 (1052)
+..|++++|.+.+.+.|...+... +...++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 468999999999999998887631 223468999999999999999999998542
Q ss_pred ------------EEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 906 ------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 ------------~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
++.++. ..+..-..+|++.+.+.. +...|+||||+|.|.
T Consensus 80 ~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt 134 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS 134 (620)
T ss_pred HHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC
Confidence 222221 122345678888887753 344699999999993
No 296
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.57 E-value=5.6e-08 Score=117.58 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=96.5
Q ss_pred ccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh---
Q 001560 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN--- 916 (1052)
Q Consensus 843 ~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~--- 916 (1052)
..+++|.+...+.+.+.+... ...+.++|++|++||||+++|++++... +.+|+.++|..+-.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 456788888888777777632 2335689999999999999999999886 57999999987632
Q ss_pred --hhhcccH-------HHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccC
Q 001560 917 --KYIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEG 987 (1052)
Q Consensus 917 --~yvGese-------~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~ 987 (1052)
..+|... ......|+.|..+ +|||||||.|.. ....+++.-++++.
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~gG---tL~ldeI~~L~~-------~~Q~~Ll~~l~~~~--------------- 309 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADGG---TLFLDEIGELPL-------ALQAKLLRVLQYGE--------------- 309 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCCC---EEEecChhhCCH-------HHHHHHHHHHhcCC---------------
Confidence 2223211 0112346666544 999999999964 12222222211000
Q ss_pred ccccchhhhhhhcccccchhHHHhhhhcCCc-ccCCeEEEEeCCC------CCCCcceEEEecCCcccccc
Q 001560 988 VVPYDIYILVNFLISACPCFQQFLTELDGVE-VLTGVFVFAATRL------EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~-~~~~v~vi~aTn~------r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
...+.+-. ..-++.+|+|||+ ..|+|...+|+.+..+.|.|
T Consensus 310 -----------------------~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~l 357 (509)
T PRK05022 310 -----------------------IQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSV 357 (509)
T ss_pred -----------------------EeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeC
Confidence 01111111 1126899999998 77899998888887766643
No 297
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.5e-07 Score=113.37 Aligned_cols=100 Identities=18% Similarity=0.316 Sum_probs=67.7
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEe---ec----
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV---KG---- 911 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v---~~---- 911 (1052)
.+..|++++|++.+.+.|+..+... +.+..+||+||+|||||++|+++|+.+.+.--.. .|
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 3478999999999999999887621 2334579999999999999999998874421000 00
Q ss_pred ------hhhh--hhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 912 ------PELL--NKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 912 ------s~l~--~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
.+++ +.....+...+|++.+.+.. +...|++|||+|.+.
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT 131 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS 131 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC
Confidence 0111 00001224558888877754 345699999999984
No 298
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1.6e-07 Score=112.93 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=66.1
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|++.+.+.+...+.. -+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46899999999999999887752 123346999999999999999999998732
Q ss_pred ---------eEEEeechhhhhhhhcccHHHHHHHHHHHhcC----CCEEEEEeCCCccC
Q 001560 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ---------~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~----~p~ILfiDEid~l~ 950 (1052)
.++.++++. ..+-..+|.+.+.+... ...|++|||+|.+.
T Consensus 80 r~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt 132 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS 132 (605)
T ss_pred HHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC
Confidence 233333321 11234577777665432 34599999999984
No 299
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.7e-06 Score=98.09 Aligned_cols=187 Identities=14% Similarity=0.147 Sum_probs=112.3
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCcc------------c
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------L 620 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~------------~ 620 (1052)
|.++.|.+.+++.+.+.+.. ...+..+||+||+|+||+++|+++|+.+.+... .
T Consensus 3 f~~iiGq~~~~~~L~~~i~~--------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQ--------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 56778888877776665421 112356999999999999999999999864321 0
Q ss_pred eeeEEEEecccc-cCCc---------------hhhH-HHHhhhhHHHh----hccCCeEEEEeccchhccCCCCCCCCCC
Q 001560 621 VAHIVFVCCSRL-SLEK---------------GPII-RQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQP 679 (1052)
Q Consensus 621 ~~~v~~v~~s~L-~~~~---------------~~~~-~~~l~~~f~~a----~~~~PsIL~IDEiD~L~~~~~~~e~~~~ 679 (1052)
...+.++.+... .+.. ...+ -..++++...+ ......|++||++|.+-.
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~---------- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE---------- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----------
Confidence 011233332110 0110 0000 01233333332 223456999999998831
Q ss_pred chhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccC
Q 001560 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (1052)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~ 759 (1052)
.-.+.|+..+++.. . .++|..++.++.+.+.+++ |.. .+.|++++.++..++|+.......
T Consensus 139 -----~aaNaLLK~LEEPp-~---------~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 139 -----AAANALLKTLEEPG-N---------GTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred -----HHHHHHHHHHhCCC-C---------CeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhcccc-
Confidence 23456666677654 1 3466677788999999998 754 799999999999999886532211
Q ss_pred CCCHHHHHHHhhhcCCCCHHHHHHHH
Q 001560 760 ECSDEILLDVASKCDGYDAYDLEILV 785 (1052)
Q Consensus 760 ~~sd~~l~~La~~teG~s~~DL~~Lv 785 (1052)
.+.....++....| ++++...++
T Consensus 200 --~~~~~~~l~~~a~G-s~~~al~~l 222 (314)
T PRK07399 200 --LNINFPELLALAQG-SPGAAIANI 222 (314)
T ss_pred --chhHHHHHHHHcCC-CHHHHHHHH
Confidence 11224566777777 444443333
No 300
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.55 E-value=4.8e-08 Score=119.09 Aligned_cols=97 Identities=26% Similarity=0.337 Sum_probs=68.4
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhh
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~ 917 (1052)
..+++++|.+...+.+.+.+... .....++||+|++||||+++|++++... +.+|+.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 46778999988888887776632 1345679999999999999999999886 579999999765322
Q ss_pred -----hhcccHH-------HHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 918 -----YIGASEQ-------AVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 918 -----yvGese~-------~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
.+|.... .....|+.|.+ .+|||||+|.+..
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~---GtL~ldei~~L~~ 304 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELADG---GTLFLDEIGEISP 304 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccccCC---CeEEEechhhCCH
Confidence 1221110 01123444433 4999999999954
No 301
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.55 E-value=1.1e-07 Score=115.18 Aligned_cols=111 Identities=21% Similarity=0.388 Sum_probs=72.2
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc----------CCeEEEe
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 909 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~----------~~~~i~v 909 (1052)
+..|+++.|.+...+.++..+.. ..+.++||+||||||||++|+++++.+ +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 46789999999998888755321 234589999999999999999998753 3689999
Q ss_pred echhh-------hhhhhcccH----------------HHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhh
Q 001560 910 KGPEL-------LNKYIGASE----------------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 966 (1052)
Q Consensus 910 ~~s~l-------~~~yvGese----------------~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~ 966 (1052)
++... .+..+|... +.-..++..|.. .+|||||++.+.+ ....+++.
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~g---G~L~IdEI~~L~~-------~~q~~LL~ 197 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHG---GVLFIDEIGELHP-------VQMNKLLK 197 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCC---cEEEEechhhCCH-------HHHHHHHH
Confidence 98631 111111100 001123444433 4999999999954 34555565
Q ss_pred ccccccc
Q 001560 967 QVSSTSY 973 (1052)
Q Consensus 967 ~~~~~~~ 973 (1052)
.|++..+
T Consensus 198 ~Le~~~~ 204 (531)
T TIGR02902 198 VLEDRKV 204 (531)
T ss_pred HHHhCee
Confidence 5544443
No 302
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.54 E-value=5.1e-08 Score=121.45 Aligned_cols=152 Identities=19% Similarity=0.297 Sum_probs=96.1
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhh--
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL-- 915 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~-- 915 (1052)
..++++.|.+...+.+.+.+... .....++||+|++||||+++|++++..+ +.+|+.++|..+-
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45788888887777766655532 1234579999999999999999999876 4799999997653
Q ss_pred ---hhhhccc----HHHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCc
Q 001560 916 ---NKYIGAS----EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGV 988 (1052)
Q Consensus 916 ---~~yvGes----e~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~ 988 (1052)
+.++|.. .......|+.|.. .+||||||+.+... ...+++.-+++.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~---GtL~ldei~~l~~~-------~Q~~Ll~~l~~~----------------- 443 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHG---GTLFLEKVEYLSPE-------LQSALLQVLKTG----------------- 443 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCC---CEEEEcChhhCCHH-------HHHHHHHHHhcC-----------------
Confidence 2233321 1111224555543 49999999999541 122222211000
Q ss_pred cccchhhhhhhcccccchhHHHhhhhcCCccc-CCeEEEEeCCC------CCCCcceEEEecCCcccccc
Q 001560 989 VPYDIYILVNFLISACPCFQQFLTELDGVEVL-TGVFVFAATRL------EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~-~~v~vi~aTn~------r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
.++.+++-... -++.+|+||++ ..|+|...+|+.+....|.|
T Consensus 444 ---------------------~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~l 492 (638)
T PRK11388 444 ---------------------VITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 (638)
T ss_pred ---------------------cEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeC
Confidence 11112221111 16789999998 67999999988887776653
No 303
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.4e-07 Score=107.70 Aligned_cols=93 Identities=23% Similarity=0.348 Sum_probs=67.8
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe------------EE
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------FI 907 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~------------~i 907 (1052)
+..|++++|.+.+.+.+...+.. -+.+.++|||||||+|||++|+++|+.+..+ ++
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 47899999999999999888763 1234579999999999999999999987542 12
Q ss_pred EeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 908 SVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 908 ~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
.++.. .......++++++.+.. +.+.|++|||+|.+.
T Consensus 81 ~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~ 121 (367)
T PRK14970 81 ELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS 121 (367)
T ss_pred Eeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC
Confidence 22211 12234667888887643 245699999999884
No 304
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.54 E-value=4.2e-07 Score=105.05 Aligned_cols=93 Identities=25% Similarity=0.357 Sum_probs=67.1
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|.+.+++.+.+.+.. -+.+..+||+||||+|||++|+++|+.+..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 46899999999999999887752 123346899999999999999999988742
Q ss_pred ---------eEEEeechhhhhhhhcccHHHHHHHHHHHhcC----CCEEEEEeCCCccC
Q 001560 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ---------~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~----~p~ILfiDEid~l~ 950 (1052)
+++.+++.+ +.+...++++++.+... ...|++|||+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~ 130 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS 130 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC
Confidence 233343321 12334577888877442 34599999999884
No 305
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=1.5e-06 Score=106.11 Aligned_cols=199 Identities=16% Similarity=0.178 Sum_probs=105.4
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccc
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L 632 (1052)
+.++.|.+..++++...+...... ..+...++|+|||||||||+++.+|+.++..... ....++|...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~----------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E--w~npv~~~~~ 150 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE----------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQE--WSNPTLPDFQ 150 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc----------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH--Hhhhhhhccc
Confidence 456777777777776655432211 2233459999999999999999999988732110 0111222111
Q ss_pred cC------------CchhhHHHHhhhhHHHhh----------ccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHH
Q 001560 633 SL------------EKGPIIRQALSNFISEAL----------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1052)
Q Consensus 633 ~~------------~~~~~~~~~l~~~f~~a~----------~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L 690 (1052)
.. .........+..++..+. .....||||||++.++.. ... .+...|
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~---~lq~lL 219 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTR---ALHEIL 219 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHH---HHHHHH
Confidence 10 000111223444444433 234569999999987621 111 111222
Q ss_pred HHHHHHhccccCCccCcCcEEEEEecCCC------C-C------CchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhc
Q 001560 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSL------E-K------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR 757 (1052)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~V~vIattn~~------~-~------Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~ 757 (1052)
. . .+.... ..++++|.+-+.. + . +.+++++..|.. +|.|++.+..+..+.|+..+...
T Consensus 220 r-~--~~~e~~-----~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 220 R-W--KYVSIG-----RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred H-H--HhhcCC-----CceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhh
Confidence 1 0 111111 1123333332211 0 1 335666433443 78999999999888888777654
Q ss_pred cCC-------CCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 001560 758 SLE-------CSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 758 ~~~-------~sd~~l~~La~~teG~s~~DL~~Lv~~ 787 (1052)
... .+++.+..++....| |++.++..
T Consensus 291 ~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~ 323 (637)
T TIGR00602 291 AKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINS 323 (637)
T ss_pred hhccccccccCCHHHHHHHHHhCCC----hHHHHHHH
Confidence 221 245678888876665 55555443
No 306
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.54 E-value=7.6e-07 Score=101.33 Aligned_cols=130 Identities=25% Similarity=0.315 Sum_probs=86.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhccCcc------------------ceeeEEEEecccccCCchhhHHHHhhhhHHHhhc
Q 001560 592 HILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD 653 (1052)
Q Consensus 592 ~vLL~GppGTGKTtLAraLA~~L~~~~~------------------~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~ 653 (1052)
.+||+||||+|||++|.++|+.+..... ....+..++.++..... .....++++......
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 4999999999999999999999874321 11356777777766542 112223333333222
Q ss_pred ----cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcC
Q 001560 654 ----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (1052)
Q Consensus 654 ----~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~ 729 (1052)
...-|++|||+|.+.. .-.+.|...++.... ...+|.+||.+..+-+.+++
T Consensus 104 ~~~~~~~kviiidead~mt~---------------~A~nallk~lEep~~---------~~~~il~~n~~~~il~tI~S- 158 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE---------------DAANALLKTLEEPPK---------NTRFILITNDPSKILPTIRS- 158 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHhccCCC---------CeEEEEEcCChhhccchhhh-
Confidence 3456999999999952 234556666666543 47888899999999888888
Q ss_pred CCcceeeeCCCCCHHHHHHHH
Q 001560 730 GRFDFHVQLPAPAASERKAIL 750 (1052)
Q Consensus 730 gRF~~~i~i~~Pd~~eR~~IL 750 (1052)
|.. .+.|++|+...+....
T Consensus 159 -Rc~-~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 159 -RCQ-RIRFKPPSRLEAIAWL 177 (325)
T ss_pred -cce-eeecCCchHHHHHHHh
Confidence 554 6788776554443333
No 307
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.54 E-value=7.2e-08 Score=110.06 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=67.0
Q ss_pred ccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh---
Q 001560 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN--- 916 (1052)
Q Consensus 843 ~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~--- 916 (1052)
+++++|.+...+.+.+.+... .....++|++|++||||+++|++++... +.+|+.++|..+-.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 456888888777777766632 1335679999999999999999999776 46999999987532
Q ss_pred --hhhcccH-------HHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 917 --KYIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 917 --~yvGese-------~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
.++|... ......|+.|..+ +|||||+|.|..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~gG---tL~l~~i~~L~~ 114 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERADGG---TLFLDELATAPM 114 (326)
T ss_pred HHHHccccccccCCcccccCCchhccCCC---eEEeCChhhCCH
Confidence 1223211 1113445666544 999999999954
No 308
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.52 E-value=1.8e-08 Score=100.33 Aligned_cols=69 Identities=28% Similarity=0.329 Sum_probs=44.6
Q ss_pred ceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh------hhhhc---ccHHHHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------NKYIG---ASEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 880 ~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~------~~yvG---ese~~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
++||+||||||||++|+.+|+.++.+++.+.++... +.|.- ..+ .....+..|.. .++++||||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~-~~~~~l~~a~~-~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFE-FKDGPLVRAMR-KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTC-EEE-CCCTTHH-EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccc-ccccccccccc-ceeEEEECCcccCC
Confidence 589999999999999999999999999998886532 22221 100 00000111101 56799999999884
No 309
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.9e-06 Score=96.96 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=115.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc----------------
Q 001560 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 620 (1052)
Q Consensus 557 ~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~---------------- 620 (1052)
+|+....+.+.+.+.. ...+..+||+||+|+||+++|+++|+.+-+....
T Consensus 5 PWl~~~~~~l~~~~~~--------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~ 70 (334)
T PRK07993 5 PWLRPDYEQLVGSYQA--------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQA 70 (334)
T ss_pred CCChHHHHHHHHHHHc--------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 5676666666554421 1223569999999999999999999998653110
Q ss_pred --eeeEEEEecccc-cCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001560 621 --VAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1052)
Q Consensus 621 --~~~v~~v~~s~L-~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~ 697 (1052)
...+.++....- ..-..++++...+.+.........-|++||++|.+-. .-.+.|+..+++.
T Consensus 71 g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEP 135 (334)
T PRK07993 71 GTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLEEP 135 (334)
T ss_pred CCCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhcCC
Confidence 012333332211 1233455666555554444445566999999999841 3456677777765
Q ss_pred ccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCC
Q 001560 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1052)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s 777 (1052)
.. .+++|.+|..++.+.+.+++ |.. .+.+++|+.++..+.|... ...+++....++..+.|-.
T Consensus 136 p~---------~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~ 198 (334)
T PRK07993 136 PE---------NTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAP 198 (334)
T ss_pred CC---------CeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCH
Confidence 43 47888899999999999999 766 6899999998877766531 1245555666677777743
Q ss_pred H
Q 001560 778 A 778 (1052)
Q Consensus 778 ~ 778 (1052)
+
T Consensus 199 ~ 199 (334)
T PRK07993 199 G 199 (334)
T ss_pred H
Confidence 3
No 310
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.51 E-value=1.2e-06 Score=104.67 Aligned_cols=200 Identities=15% Similarity=0.168 Sum_probs=116.5
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccC
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~ 634 (1052)
.+.|.+..++.+.+.+..+... ..+++|+|++||||+++|+++....... ..+++.++|..+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~v~v~c~~~~~ 203 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPS-------------DITVLLLGESGTGKEVLARALHQLSDRK---DKRFVAINCAAIPE 203 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCcCHHHHHHHHHHhCCcC---CCCeEEEECCCCCh
Confidence 4556667777777766554322 2569999999999999999999865422 25788999998743
Q ss_pred CchhhHHHHhh----hhHH--------HhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cc
Q 001560 635 EKGPIIRQALS----NFIS--------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EK 700 (1052)
Q Consensus 635 ~~~~~~~~~l~----~~f~--------~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~--~~ 700 (1052)
... +..+- ..|. ......+++|||||++.|- . .+...|.+.++.-. ..
T Consensus 204 ~~~---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-----------~----~~q~~l~~~l~~~~~~~~ 265 (445)
T TIGR02915 204 NLL---ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP-----------L----NLQAKLLRFLQERVIERL 265 (445)
T ss_pred HHH---HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC-----------H----HHHHHHHHHHhhCeEEeC
Confidence 211 11100 0000 0112345799999999983 2 23333444443211 00
Q ss_pred cCCccCcCcEEEEEecCCC-------CCCchhhhcCCCcceeeeCCCCCHHHHHH----HHHHHHhh----cc---CCCC
Q 001560 701 RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFDFHVQLPAPAASERKA----ILEHEIQR----RS---LECS 762 (1052)
Q Consensus 701 ~~~~~~~~~V~vIattn~~-------~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~----IL~~~l~~----~~---~~~s 762 (1052)
+........+.+|++++.. ..+.+.|.. |+. .+.+..|...+|.+ ++++++++ .+ ..++
T Consensus 266 ~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~ 342 (445)
T TIGR02915 266 GGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFT 342 (445)
T ss_pred CCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 0000111257888888753 233344433 333 24445555555543 44444432 12 3588
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 763 DEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 763 d~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
++.+..|..+..-.+.++|++++++|+..
T Consensus 343 ~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 343 DDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 99999998887556889999999988743
No 311
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=3.5e-06 Score=95.45 Aligned_cols=175 Identities=13% Similarity=0.114 Sum_probs=111.3
Q ss_pred cccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc---------------
Q 001560 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL--------------- 620 (1052)
Q Consensus 556 l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~--------------- 620 (1052)
.+|+....+.+.+.+.. ...+..+||+||+|+||+++|+++|+.+.+....
T Consensus 4 yPW~~~~~~~l~~~~~~--------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~ 69 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQ--------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQ 69 (325)
T ss_pred CcchHHHHHHHHHHHHc--------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHh
Confidence 35777776666654421 1223469999999999999999999998753210
Q ss_pred ---eeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001560 621 ---VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1052)
Q Consensus 621 ---~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~ 697 (1052)
...+.++...+=..-..++++...+.+.........-|++||++|.+-. .-.+.|+..+++.
T Consensus 70 ~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEEP 134 (325)
T PRK06871 70 AGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLEEP 134 (325)
T ss_pred cCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCH---------------HHHHHHHHHhcCC
Confidence 0113333322111123455555444444444444556999999999841 3345666777764
Q ss_pred ccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCC
Q 001560 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1052)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~ 776 (1052)
.. .+++|.+|+.++.+.+.+++ |.. .+.|++|+.++..+.|.... ...+.....++..+.|-
T Consensus 135 p~---------~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~ 196 (325)
T PRK06871 135 RP---------NTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGR 196 (325)
T ss_pred CC---------CeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCC
Confidence 43 47888899999999999998 665 78999999998877776532 12233344455556653
No 312
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.50 E-value=3.2e-08 Score=98.64 Aligned_cols=107 Identities=24% Similarity=0.347 Sum_probs=73.3
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcC---CeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCcC
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~---~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~r 953 (1052)
...++|++|++||||+++|++++...+ .+|+.+++.++- .++++.+..+ +|||+|+|.+..
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a~~g---tL~l~~i~~L~~-- 83 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQAKGG---TLYLKNIDRLSP-- 83 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHCTTS---EEEEECGCCS-H--
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHcCCC---EEEECChHHCCH--
Confidence 346799999999999999999999885 367777776532 4577777444 999999999953
Q ss_pred CCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC--
Q 001560 954 GHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL-- 1031 (1052)
Q Consensus 954 ~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~-- 1031 (1052)
....+ |+..+...+ ..++.+|+++..
T Consensus 84 -----~~Q~~----------------------------------------------L~~~l~~~~-~~~~RlI~ss~~~l 111 (138)
T PF14532_consen 84 -----EAQRR----------------------------------------------LLDLLKRQE-RSNVRLIASSSQDL 111 (138)
T ss_dssp -----HHHHH----------------------------------------------HHHHHHHCT-TTTSEEEEEECC-C
T ss_pred -----HHHHH----------------------------------------------HHHHHHhcC-CCCeEEEEEeCCCH
Confidence 11222 333333222 345677777777
Q ss_pred ----CCCCcceEEEecCCcccccc
Q 001560 1032 ----EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 1032 ----r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
..|+|+..+|+.+...+|.|
T Consensus 112 ~~l~~~~~~~~~L~~~l~~~~i~l 135 (138)
T PF14532_consen 112 EELVEEGRFSPDLYYRLSQLEIHL 135 (138)
T ss_dssp CCHHHHSTHHHHHHHHCSTCEEEE
T ss_pred HHHhhccchhHHHHHHhCCCEEeC
Confidence 46889988888887776643
No 313
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=5e-07 Score=105.99 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=44.5
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~ 904 (1052)
+..|++++|++.+++.|+..+.. -+.+..+||+||||||||++|+++|+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46899999999999999887762 133445999999999999999999998854
No 314
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=3.6e-07 Score=108.53 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=64.2
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|.+.+.+.+...+.. -+.+..+||+||||+|||++|+++|+.+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 47899999999999999887762 123345899999999999999999998733
Q ss_pred ----------eEEEeechhhhhhhhcccHHHHHHHHHHH----hcCCCEEEEEeCCCccC
Q 001560 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ----------~~i~v~~s~l~~~yvGese~~ir~lf~~A----~~~~p~ILfiDEid~l~ 950 (1052)
.++.+++... . +-..++++-+.+ ..+...|++|||+|.+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt 134 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT 134 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC
Confidence 2333433211 1 113344443333 22456799999999984
No 315
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.49 E-value=3.1e-07 Score=109.60 Aligned_cols=73 Identities=22% Similarity=0.401 Sum_probs=53.7
Q ss_pred CceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
.+++||||||||||+|++++|+++ +..++.+++.++.+.+.+.-......-|...-. .+.+|+|||++.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 469999999999999999999887 567889999988776655433222222322212 4669999999999654
No 316
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.48 E-value=1.3e-06 Score=89.69 Aligned_cols=125 Identities=22% Similarity=0.311 Sum_probs=79.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccc-----------------eeeEEEEeccccc-CCchhhHHHHhhhhHHHh
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-----------------VAHIVFVCCSRLS-LEKGPIIRQALSNFISEA 651 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~-----------------~~~v~~v~~s~L~-~~~~~~~~~~l~~~f~~a 651 (1052)
|..+||+||+|+||+++|+++|+.+...... ...+..++...-. .-..++++.....+....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 4569999999999999999999998754322 2335555544331 223344443333322222
Q ss_pred hccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCC
Q 001560 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1052)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gR 731 (1052)
.....-|++|||+|.+-. ...+.|+..+++... .+.+|.+|+.++.+.+.+++ |
T Consensus 99 ~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEepp~---------~~~fiL~t~~~~~il~TI~S--R 152 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKLTE---------------EAQNALLKTLEEPPE---------NTYFILITNNPSKILPTIRS--R 152 (162)
T ss_dssp TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHSTTT---------TEEEEEEES-GGGS-HHHHT--T
T ss_pred hcCCceEEEeehHhhhhH---------------HHHHHHHHHhcCCCC---------CEEEEEEECChHHChHHHHh--h
Confidence 334566999999999841 456777788887654 48899999999999999999 6
Q ss_pred cceeeeCCCC
Q 001560 732 FDFHVQLPAP 741 (1052)
Q Consensus 732 F~~~i~i~~P 741 (1052)
.. .+.+++.
T Consensus 153 c~-~i~~~~l 161 (162)
T PF13177_consen 153 CQ-VIRFRPL 161 (162)
T ss_dssp SE-EEEE---
T ss_pred ce-EEecCCC
Confidence 54 5666543
No 317
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.47 E-value=2.1e-07 Score=116.74 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=69.2
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh-
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN- 916 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~- 916 (1052)
..+++++|.+...+.+.+.+... .....++|++|++|||||++|++++... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35678899888888887766632 1234679999999999999999999876 67999999976532
Q ss_pred ----hhhccc-------HHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 917 ----KYIGAS-------EQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 917 ----~yvGes-------e~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
..+|.. .......|+.|..+ +|||||++.+..
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~~G---tL~Ldei~~L~~ 484 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELADKS---SLFLDEVGDMPL 484 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcCCC---eEEEechhhCCH
Confidence 122311 01123456666544 999999999954
No 318
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.47 E-value=1.1e-07 Score=115.03 Aligned_cols=98 Identities=16% Similarity=0.323 Sum_probs=68.6
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 916 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~ 916 (1052)
...+++++|.+...+.+.+.+... .....++|++|++||||+++|++++... +.+|+.++|+.+-.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 357888999887766666555421 1234569999999999999999998776 46899999987532
Q ss_pred h-----hhcccH-------HHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 917 K-----YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 917 ~-----yvGese-------~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
. .+|... ..-..+|+.|..+ +|||||+|.+.+
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G---tL~LdeI~~L~~ 312 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANGG---SVLLDEIGEMSP 312 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCCC---EEEEeChhhCCH
Confidence 1 222211 1123467776554 999999999954
No 319
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.46 E-value=2.5e-07 Score=109.36 Aligned_cols=99 Identities=21% Similarity=0.306 Sum_probs=70.8
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe-------EEEee--
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------FISVK-- 910 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------~i~v~-- 910 (1052)
+..|++++|++.+.+.|+..+..- +..-+.||+||-|||||++||.+|+.+++. +..+.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 478999999999999999988732 334568999999999999999999988443 21110
Q ss_pred ----c---hhhh--hhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 911 ----G---PELL--NKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 911 ----~---s~l~--~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
. .|++ +.-...+-..+|++.+.+.- +.+.|++|||++.|.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS 132 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS 132 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh
Confidence 0 1111 11112234678999888743 355699999999994
No 320
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.46 E-value=2.6e-07 Score=108.83 Aligned_cols=72 Identities=24% Similarity=0.425 Sum_probs=52.2
Q ss_pred CceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechhhhhhhhcccHH-HHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~l~~~yvGese~-~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
.+++||||||+|||+|++++++++ +..++.+++.++...+.+.... .+....+..+ .+.+|+|||++.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 468999999999999999999887 6788999998887665543221 1222222222 2469999999999653
No 321
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.45 E-value=1.2e-07 Score=117.91 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=84.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc------ccCCchhhHHHH---hhhhHHHhhccCCeEEEE
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKGPIIRQA---LSNFISEALDHAPSIVIF 661 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~------L~~~~~~~~~~~---l~~~f~~a~~~~PsIL~I 661 (1052)
-.+|+.||..||||+++..+|++.+ ..++.++-.. ..|.++..-... -+.++-+|. ...-.+++
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tg------hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAl-R~GyWIVL 961 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETG------HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEAL-RRGYWIVL 961 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhC------ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHH-hcCcEEEe
Confidence 4599999999999999999999988 4556665432 223222111000 011222332 23458999
Q ss_pred eccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCC-ccCcCcEEEEEecCCCC------CCchhhhcCC
Q 001560 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKS-SCGIGPIAFVASAQSLE------KIPQSLTSSG 730 (1052)
Q Consensus 662 DEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~----~~~~~-~~~~~~V~vIattn~~~------~Ld~aL~r~g 730 (1052)
||+.... . .+++.|.+++|.-+ ...+. ....+...++||-|+|. -+..+++.
T Consensus 962 DELNLAp-----------T----DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN-- 1024 (4600)
T COG5271 962 DELNLAP-----------T----DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN-- 1024 (4600)
T ss_pred eccccCc-----------H----HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--
Confidence 9996542 1 45555666665432 22222 22234567777777664 45677777
Q ss_pred CcceeeeCCCCCHHHHHHHHHHH
Q 001560 731 RFDFHVQLPAPAASERKAILEHE 753 (1052)
Q Consensus 731 RF~~~i~i~~Pd~~eR~~IL~~~ 753 (1052)
||- .++|..-..++...||+..
T Consensus 1025 RFl-E~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1025 RFL-EMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred hhH-hhhcccCcHHHHHHHHhcc
Confidence 887 6788888889999998753
No 322
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.44 E-value=1.7e-07 Score=106.43 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=40.1
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
+..|.++.|++++++.+.-....+ ...|+||+|+||||||++|+++|..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 356899999999998876433211 12579999999999999999999998
No 323
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.43 E-value=6.6e-07 Score=97.77 Aligned_cols=154 Identities=20% Similarity=0.269 Sum_probs=104.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhc-------cCCeEEEEecc
Q 001560 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-------HAPSIVIFDNL 664 (1052)
Q Consensus 592 ~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~-------~~PsIL~IDEi 664 (1052)
|.|+|||||+|||+...+.|+.+.........+..++.++-.+-.. .++.+. .|..+.. ..+-.+++||+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~--vr~qi~-~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDP--VRQQIH-LFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcc--hHHHHH-HHHhhccceeccccCceeEEEecch
Confidence 8999999999999999999999985333222334445555433322 222222 2333321 25669999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHH
Q 001560 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAAS 744 (1052)
Q Consensus 665 D~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~ 744 (1052)
|.+.. .-.+.|.+..+.+.. ++.++..+|++..+.+++++ ||. .+.+.+.+..
T Consensus 141 DaMT~---------------~AQnALRRviek~t~---------n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~ 193 (360)
T KOG0990|consen 141 DAMTR---------------DAQNALRRVIEKYTA---------NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMA 193 (360)
T ss_pred hHhhH---------------HHHHHHHHHHHHhcc---------ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChh
Confidence 99852 223344455555543 36777889999999999998 777 5778888888
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHhhhcCC
Q 001560 745 ERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1052)
Q Consensus 745 eR~~IL~~~l~~~~~~~sd~~l~~La~~teG 775 (1052)
+...++.++++......+++....++...-|
T Consensus 194 ~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g 224 (360)
T KOG0990|consen 194 QQTERQSHIRESEQKETNPEGYSALGRLSVG 224 (360)
T ss_pred hhhhHHHHHHhcchhhcCHHHHHHHHHHhHH
Confidence 8888888888776666777766666655444
No 324
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=6.3e-07 Score=107.18 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=64.9
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|++.+.+.++..+.. -+.+..+|||||+|+|||++|+++|+.+..
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 46899999999999999888762 122334789999999999999999998753
Q ss_pred ---------eEEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ---------~~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
.++.++++ ....-..+|.+.+.+.. +.+.|++|||+|.+.
T Consensus 80 ~~i~~g~~~d~~eidaa------s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt 132 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAA------SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT 132 (486)
T ss_pred HHHhcCCCCcEEEEeCc------cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC
Confidence 12222211 01223446666666543 345699999999884
No 325
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.43 E-value=1.4e-06 Score=101.22 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=66.2
Q ss_pred ccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcC---------CeEEEeechh
Q 001560 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---------LRFISVKGPE 913 (1052)
Q Consensus 843 ~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~---------~~~i~v~~s~ 913 (1052)
-+++.|.++..+.|...+..... + ..+.+++++||||||||++++++++.+. ..++.+++..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 34788888888888777652211 1 2335799999999999999999997652 5678888754
Q ss_pred hhh----------hhh--cc-------c-HHHHHHHHHHHh-cCCCEEEEEeCCCccC
Q 001560 914 LLN----------KYI--GA-------S-EQAVRDIFSKAT-AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 914 l~~----------~yv--Ge-------s-e~~ir~lf~~A~-~~~p~ILfiDEid~l~ 950 (1052)
..+ ... |. + ++....+++... ...+.||+|||+|.+.
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc
Confidence 321 111 11 1 223455555543 3457799999999997
No 326
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2.4e-06 Score=97.82 Aligned_cols=134 Identities=18% Similarity=0.203 Sum_probs=85.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccc------------------eeeEEEEecccccCCchhhHHHHhhhhHHHh
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA 651 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~------------------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a 651 (1052)
+..+||+||+|+|||++|+++|+.+.+.... ...+.++.... ..-..++++..+..+-...
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~-~~i~id~ir~l~~~~~~~~ 106 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG-QSIKKDQIRYLKEEFSKSG 106 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc-ccCCHHHHHHHHHHHhhCC
Confidence 3558999999999999999999998643200 01122332211 0112233333332222111
Q ss_pred hccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCC
Q 001560 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1052)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gR 731 (1052)
.....-|++|||+|.+-. .-.+.|+..+++... .+.+|.+|+.++.+.+.+++ |
T Consensus 107 ~~~~~kvviI~~a~~~~~---------------~a~NaLLK~LEEPp~---------~~~~Il~t~~~~~ll~TIrS--R 160 (329)
T PRK08058 107 VESNKKVYIIEHADKMTA---------------SAANSLLKFLEEPSG---------GTTAILLTENKHQILPTILS--R 160 (329)
T ss_pred cccCceEEEeehHhhhCH---------------HHHHHHHHHhcCCCC---------CceEEEEeCChHhCcHHHHh--h
Confidence 223446999999998831 234567777776543 36777788888899999998 6
Q ss_pred cceeeeCCCCCHHHHHHHHH
Q 001560 732 FDFHVQLPAPAASERKAILE 751 (1052)
Q Consensus 732 F~~~i~i~~Pd~~eR~~IL~ 751 (1052)
.. .+++++|+.++..++++
T Consensus 161 c~-~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 161 CQ-VVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ce-eeeCCCCCHHHHHHHHH
Confidence 55 79999999998877775
No 327
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.42 E-value=5e-07 Score=105.83 Aligned_cols=72 Identities=26% Similarity=0.374 Sum_probs=43.1
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCC--eEEEee-----chhhhhhhhcccHHHH--HHHHHHHhcC---CCEEEEEe
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVK-----GPELLNKYIGASEQAV--RDIFSKATAA---APCLLFFD 944 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~--~~i~v~-----~s~l~~~yvGese~~i--r~lf~~A~~~---~p~ILfiD 944 (1052)
.+.++||+||||||||++|+++|..++. +|..+. .+++++.. +-... ..-|.+...+ ...+||+|
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l---~i~~~~~~g~f~r~~~G~L~~A~lLfLD 114 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL---SIQALKDEGRYQRLTSGYLPEAEIVFLD 114 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH---HHhhhhhcCchhhhcCCccccccEEeec
Confidence 4578999999999999999999997743 333332 23333221 00110 1233332222 22399999
Q ss_pred CCCccCC
Q 001560 945 EFDSIAP 951 (1052)
Q Consensus 945 Eid~l~~ 951 (1052)
||..+.+
T Consensus 115 EI~rasp 121 (498)
T PRK13531 115 EIWKAGP 121 (498)
T ss_pred ccccCCH
Confidence 9986643
No 328
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=7.7e-07 Score=108.09 Aligned_cols=94 Identities=22% Similarity=0.324 Sum_probs=66.4
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe-------------
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------- 905 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~------------- 905 (1052)
.+..|++++|++.+++.|+..+.. -+.+..+|||||+|+|||++|+++|+.+...
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 347899999999999999888762 1233458999999999999999999987532
Q ss_pred -----------EEEeechhhhhhhhcccHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 906 -----------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 -----------~i~v~~s~l~~~yvGese~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
++.+++.. ...-..++++.+.+. .+...|++|||+|.+.
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls 132 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS 132 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC
Confidence 22222211 012345666665543 3455699999999993
No 329
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.9e-06 Score=98.30 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=90.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhccCccc-------------------eeeEEEEeccccc----------------
Q 001560 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------------------VAHIVFVCCSRLS---------------- 633 (1052)
Q Consensus 589 ~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~-------------------~~~v~~v~~s~L~---------------- 633 (1052)
.+..+||+||+|+||+++|+++|+.+.+.... ...+.++......
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 34679999999999999999999998764310 0112333222100
Q ss_pred -----------CCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccC
Q 001560 634 -----------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (1052)
Q Consensus 634 -----------~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (1052)
.-..++++...+.+-........-|++||++|.+-. .-.+.|+..+++...
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~--- 161 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLEEPPP--- 161 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCc---
Confidence 112233343333222222233445999999999841 334566666776443
Q ss_pred CccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHH
Q 001560 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1052)
Q Consensus 703 ~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~ 752 (1052)
.+++|.+|++++.+.+.+++ |.. .+.|++|+.++..+.|..
T Consensus 162 ------~t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 162 ------GTVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred ------CcEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHH
Confidence 47899999999999999999 774 799999999998888864
No 330
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.42 E-value=5.4e-06 Score=99.67 Aligned_cols=199 Identities=14% Similarity=0.117 Sum_probs=120.5
Q ss_pred cccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc
Q 001560 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1052)
Q Consensus 554 ~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~ 633 (1052)
.++.|....+.++.+.+..+... ...+++.|++|||||++|+++...... ...+++.++|..+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~i~i~c~~~~ 201 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRS-------------SISVLINGESGTGKELVAHALHRHSPR---AKAPFIALNMAAIP 201 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhcc-------------CCeEEEEeCCCCcHHHHHHHHHhcCCC---CCCCeEeeeCCCCC
Confidence 35667777888887777654332 356999999999999999999986432 22678999998874
Q ss_pred CCchhhHHHHhhhhHHH---------------hhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 001560 634 LEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1052)
Q Consensus 634 ~~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~ 698 (1052)
.... .. .+|.. .....++.|||||+|.|.. .+...|.+.++...
T Consensus 202 ~~~~---~~---~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~---------------~~q~~L~~~l~~~~ 260 (469)
T PRK10923 202 KDLI---ES---ELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL---------------DVQTRLLRVLADGQ 260 (469)
T ss_pred HHHH---HH---HhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH---------------HHHHHHHHHHhcCc
Confidence 3211 11 11110 1122356899999999841 23334444444321
Q ss_pred --cccCCccCcCcEEEEEecCCC-------CCCchhhhcCCCcc-eeeeCCCCCH--HHHHHHHHHHHhh----cc---C
Q 001560 699 --EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS---L 759 (1052)
Q Consensus 699 --~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~r~gRF~-~~i~i~~Pd~--~eR~~IL~~~l~~----~~---~ 759 (1052)
..+........+.+|+|++.. ..+.+.|.. ||. ..|.+|+... ++...++.++++. .+ .
T Consensus 261 ~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~ 338 (469)
T PRK10923 261 FYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK 338 (469)
T ss_pred EEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 100000011247888888652 234455555 553 3455555432 3344455555542 22 2
Q ss_pred CCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 760 ~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
.++++.+..|..+..-.+-++|++++++++..
T Consensus 339 ~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 47889999998887666889999999998754
No 331
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=7.5e-06 Score=92.65 Aligned_cols=156 Identities=20% Similarity=0.212 Sum_probs=97.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccce---------------eeEEEE--eccccc-----CCchhhHHHHhhhh
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------------AHIVFV--CCSRLS-----LEKGPIIRQALSNF 647 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~---------------~~v~~v--~~s~L~-----~~~~~~~~~~l~~~ 647 (1052)
|..+||+||+|+||+++|+++|+.+.+..... ..+.++ ..+.-. .-..+.++...+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 34599999999999999999999886532100 112223 111100 01122333322222
Q ss_pred HHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhh
Q 001560 648 ISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLT 727 (1052)
Q Consensus 648 f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~ 727 (1052)
.........-|++||++|.+-. .-.+.|+..+++... .+.+|.+++.++.+.+.++
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~---------~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEEPSP---------GRYLWLISAQPARLPATIR 161 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhCCCC---------CCeEEEEECChhhCchHHH
Confidence 2222223345999999999831 334566677777543 4678888888999999999
Q ss_pred cCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCH
Q 001560 728 SSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (1052)
Q Consensus 728 r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~ 778 (1052)
+ |.. .+.|++|+.++..+.|.. .+ .++.....++..+.|-..
T Consensus 162 S--RCq-~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 162 S--RCQ-RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPG 203 (319)
T ss_pred h--hhe-EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHH
Confidence 9 765 789999999887777653 22 344445556667777444
No 332
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.41 E-value=1.7e-06 Score=101.54 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=64.0
Q ss_pred cccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechhh----
Q 001560 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPEL---- 914 (1052)
Q Consensus 844 ~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~l---- 914 (1052)
+.+.|.++..+.+...+..... + ..+.+++++||||||||++++.+++.+ +..++.+++...
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4577777777777766642111 1 223569999999999999999999876 577888988533
Q ss_pred ------hhhhhc-------cc-HHHHHHHHHHHh-cCCCEEEEEeCCCccC
Q 001560 915 ------LNKYIG-------AS-EQAVRDIFSKAT-AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 915 ------~~~yvG-------es-e~~ir~lf~~A~-~~~p~ILfiDEid~l~ 950 (1052)
.....+ .+ +.....+++... ...+.||+|||+|.+.
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 222222 11 222333333333 2456899999999997
No 333
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.2e-06 Score=107.05 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEE-----------E
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI-----------S 908 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i-----------~ 908 (1052)
+..|++++|++.+++.|+..+.. -+.+..+||+||+|||||++|+++|+.+.+.-. .
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 46899999999999999887752 133445999999999999999999999855210 0
Q ss_pred e--e---chhh-------hhhhhcc---cHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 909 V--K---GPEL-------LNKYIGA---SEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 909 v--~---~s~l-------~~~yvGe---se~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
- . |..+ +..+.|. +...++++.+.+. .+...|++|||+|.+.
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt 140 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS 140 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC
Confidence 0 0 0000 0011121 1345777666652 2345699999999994
No 334
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.39 E-value=1.1e-06 Score=102.09 Aligned_cols=75 Identities=20% Similarity=0.423 Sum_probs=48.8
Q ss_pred CCceeEecCCCCchhhHHHHHHHHcCCe-------EEEeec----hhhhhhh----hccc--HHHHHHHHHHHhcC--CC
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR-------FISVKG----PELLNKY----IGAS--EQAVRDIFSKATAA--AP 938 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~~~~-------~i~v~~----s~l~~~y----vGes--e~~ir~lf~~A~~~--~p 938 (1052)
..+++|+||||||||++|+.+|..++.. ++.+.. .+++..+ +|-. ...+.+++..|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4689999999999999999999887431 233321 2344333 1111 11234555667543 57
Q ss_pred EEEEEeCCCccCCc
Q 001560 939 CLLFFDEFDSIAPK 952 (1052)
Q Consensus 939 ~ILfiDEid~l~~~ 952 (1052)
++|||||++..-..
T Consensus 274 ~vliIDEINRani~ 287 (459)
T PRK11331 274 YVFIIDEINRANLS 287 (459)
T ss_pred cEEEEehhhccCHH
Confidence 89999999988543
No 335
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.39 E-value=9.9e-07 Score=95.49 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=45.5
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
...+++|+||+|||||++|+++++.+ +.+++.+++.++... +.. .....+|+|||+|.+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLD 103 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcC
Confidence 34679999999999999999999875 678888888765421 111 1234599999999874
No 336
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=1.2e-06 Score=107.05 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=68.4
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEee--------
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK-------- 910 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~-------- 910 (1052)
.+..|++++|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 347899999999999999988763 133456999999999999999999998854321111
Q ss_pred -----c--------hhhhhhh--hcccHHHHHHHHHHHhcC----CCEEEEEeCCCccC
Q 001560 911 -----G--------PELLNKY--IGASEQAVRDIFSKATAA----APCLLFFDEFDSIA 950 (1052)
Q Consensus 911 -----~--------s~l~~~y--vGese~~ir~lf~~A~~~----~p~ILfiDEid~l~ 950 (1052)
| ++++.-. ..-.-..+|++.+.++.. ...|++|||+|.+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls 145 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS 145 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC
Confidence 0 1111000 001134678888777533 35699999999994
No 337
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.37 E-value=9.7e-07 Score=95.22 Aligned_cols=88 Identities=23% Similarity=0.357 Sum_probs=60.2
Q ss_pred CCccccc--cchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhh
Q 001560 841 SGWDDVG--GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 915 (1052)
Q Consensus 841 ~~~~~i~--g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~ 915 (1052)
.++++.. +.....+.++..+. ...+.+++|+||+|||||++|+++++.+ +.+++.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3445543 34455566665432 1234679999999999999999999876 5788889988876
Q ss_pred hhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 916 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 916 ~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
... .+++..... ..+|+|||+|.+..
T Consensus 79 ~~~--------~~~~~~~~~--~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 79 QAD--------PEVLEGLEQ--ADLVCLDDVEAIAG 104 (226)
T ss_pred HhH--------HHHHhhccc--CCEEEEeChhhhcC
Confidence 432 233433322 34999999999854
No 338
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.36 E-value=2.4e-07 Score=106.26 Aligned_cols=97 Identities=23% Similarity=0.390 Sum_probs=74.3
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc----CCeEEEeechhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELL 915 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~----~~~~i~v~~s~l~ 915 (1052)
...+.+++|.+.--+.+++.+.. + .....++|++|++||||+.+|++|+... +.|||.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 35677888888877777777663 1 2334679999999999999999998655 5699999998875
Q ss_pred hh-------------hhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 916 NK-------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 916 ~~-------------yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
.. |.| ....-..+|+.|.++ +||+|||..+-+
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~ 187 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP 187 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH
Confidence 32 445 233446788888777 999999999976
No 339
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.35 E-value=6e-07 Score=106.47 Aligned_cols=73 Identities=21% Similarity=0.422 Sum_probs=52.4
Q ss_pred CceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechhhhhhhhcccH-HHHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASE-QAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~l~~~yvGese-~~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
.+++||||||||||+|++++|+.+ +..++.+++.+++..+...-. ..+.+ |.......+.+|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 359999999999999999999886 467888999888766543221 12222 22222235779999999998653
No 340
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.35 E-value=6.6e-06 Score=88.45 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=65.7
Q ss_pred CCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCC-------------CCC
Q 001560 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-------------LEK 721 (1052)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~-------------~~~ 721 (1052)
-|.||||||++.|- - ....+|.+.++.... +++++ ++|+ |..
T Consensus 296 vPGVLFIDEVhMLD-----i----------EcFTyL~kalES~ia---------Pivif-AsNrG~~~irGt~d~~sPhG 350 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-----I----------ECFTYLHKALESPIA---------PIVIF-ASNRGMCTIRGTEDILSPHG 350 (456)
T ss_pred cCcceEeeehhhhh-----h----------HHHHHHHHHhcCCCC---------ceEEE-ecCCcceeecCCcCCCCCCC
Confidence 48899999998872 1 345556665554222 44444 4443 456
Q ss_pred CchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCC
Q 001560 722 IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1052)
Q Consensus 722 Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG 775 (1052)
+++.|+. |.- .+...+++.++..+|++...+..++.++++.+..++.....
T Consensus 351 ip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ 401 (456)
T KOG1942|consen 351 IPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTS 401 (456)
T ss_pred CCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccc
Confidence 7777777 654 56777888999999999999888999999999888876443
No 341
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.1e-06 Score=107.99 Aligned_cols=93 Identities=20% Similarity=0.321 Sum_probs=63.9
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe--------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-------------- 905 (1052)
+..|++++|++.+++.|+..+... +.+..+||+||+|+|||++|+++|+.+...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 468999999999999998877621 223347999999999999999999887431
Q ss_pred -----------EEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 906 -----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 -----------~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
++.++.+. ...-..+|++.+.+.. ....|+||||+|.+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~ 133 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS 133 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC
Confidence 22222211 1123445666554432 345699999999884
No 342
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=8.1e-06 Score=89.67 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=70.2
Q ss_pred CeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-cccCCccCcCcEEEEEecC----CCCCCchhhhcCC
Q 001560 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASAQ----SLEKIPQSLTSSG 730 (1052)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~-~~~~~~~~~~~V~vIattn----~~~~Ld~aL~r~g 730 (1052)
.+|+||||||.++.....+.+ .-...-+.+-|+-++++.. ....+......+++||+.- .|.+|-|.|.-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~---dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG-- 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP---DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG-- 325 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC---CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--
Confidence 459999999999864321111 1122244455555555432 1122233344688888753 46666677765
Q ss_pred CcceeeeCCCCCHHHHHHHHH--------H---HHhh--ccCCCCHHHHHHHhhhc
Q 001560 731 RFDFHVQLPAPAASERKAILE--------H---EIQR--RSLECSDEILLDVASKC 773 (1052)
Q Consensus 731 RF~~~i~i~~Pd~~eR~~IL~--------~---~l~~--~~~~~sd~~l~~La~~t 773 (1052)
||+-.+++...+.+.-.+||. . +++. ..+.++++.+..+|...
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 999999999999999988874 1 1222 23457788777776654
No 343
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.33 E-value=7.7e-06 Score=97.95 Aligned_cols=197 Identities=15% Similarity=0.183 Sum_probs=115.5
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccC
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~ 634 (1052)
.+.|....+.++.+.+..+.... ..+|++|++||||+++|+++...... ...+++.++|..+..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~~-------------~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~~~i~c~~~~~ 207 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALSQ-------------ASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALPE 207 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCCC-------------cEEEEEcCCCccHHHHHHHHHHhCCC---CCCCeEEEECCCCCH
Confidence 35556667777777765554322 56999999999999999999885432 225789999988753
Q ss_pred CchhhHHHHhhhhHH---------------HhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-
Q 001560 635 EKGPIIRQALSNFIS---------------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1052)
Q Consensus 635 ~~~~~~~~~l~~~f~---------------~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~- 698 (1052)
... .. .+|. .......++|||||+|.+-. .+...|...++.-.
T Consensus 208 ~~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~---------------~~q~~L~~~l~~~~~ 266 (457)
T PRK11361 208 SLL---ES---ELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL---------------VLQAKLLRILQEREF 266 (457)
T ss_pred HHH---HH---HhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH---------------HHHHHHHHHHhcCcE
Confidence 211 11 1111 01112356999999999842 22333444444311
Q ss_pred -cccCCccCcCcEEEEEecCCCC-------CCchhhhcCCCcceeeeCCCCCHHHHHH----HHHHHHhhc----c---C
Q 001560 699 -EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASERKA----ILEHEIQRR----S---L 759 (1052)
Q Consensus 699 -~~~~~~~~~~~V~vIattn~~~-------~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~----IL~~~l~~~----~---~ 759 (1052)
..+.......++.+|++++..- .+.+.+.. |+. .+.+..|...+|.+ ++..++.+. + .
T Consensus 267 ~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~ 343 (457)
T PRK11361 267 ERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDII 343 (457)
T ss_pred EeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 1011011112578888887531 22233322 332 34555566555543 444444321 1 3
Q ss_pred CCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 760 ~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
.++++.+..+..+..-.+-++|++++++++..
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 57888999998887666889999999988743
No 344
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.33 E-value=5.6e-07 Score=102.53 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=41.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
...|.+|+|++++|..|.-.+..| ..+++||.|++|||||++|++++..+
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 356899999999999997665532 22589999999999999999998776
No 345
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=9.7e-06 Score=92.77 Aligned_cols=194 Identities=19% Similarity=0.227 Sum_probs=121.1
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccC
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~ 634 (1052)
.+.|.+..++.+.+.++.-+. ...++.+.++|.||||||.+..-+-..+...... ..+++++|..+..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle-----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE-----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTE 218 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh-----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccc
Confidence 455677777777777755443 3345779999999999999998777766533321 3568999986542
Q ss_pred Cc--hhh-------------HHHHhhhhHHH-hhcc-CCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHH--
Q 001560 635 EK--GPI-------------IRQALSNFISE-ALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD-- 695 (1052)
Q Consensus 635 ~~--~~~-------------~~~~l~~~f~~-a~~~-~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld-- 695 (1052)
.. +.. ........|.. .... .+-++++||+|.|+.... . .|..+++
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~---vLy~lFewp 283 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------T---VLYTLFEWP 283 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------c---eeeeehhcc
Confidence 11 000 01111122221 1112 366899999999973211 1 1222222
Q ss_pred HhccccCCccCcCcEEEEEecCCCCCCchhhhc----CCCcceeeeCCCCCHHHHHHHHHHHHhhccCC-CCHHHHHHHh
Q 001560 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS----SGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVA 770 (1052)
Q Consensus 696 ~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r----~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~-~sd~~l~~La 770 (1052)
.+.. ..+++||.+|..+.-|..|.+ .+.-+..+.|++++.++..+|+...+...... +-+..+...|
T Consensus 284 ~lp~--------sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~A 355 (529)
T KOG2227|consen 284 KLPN--------SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCA 355 (529)
T ss_pred cCCc--------ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 2221 148999999998765555443 23344678999999999999999888764433 3345688888
Q ss_pred hhcCCCCHHHHHHH
Q 001560 771 SKCDGYDAYDLEIL 784 (1052)
Q Consensus 771 ~~teG~s~~DL~~L 784 (1052)
+...|.+| |++.+
T Consensus 356 rKvaa~SG-DlRka 368 (529)
T KOG2227|consen 356 RKVAAPSG-DLRKA 368 (529)
T ss_pred HHhccCch-hHHHH
Confidence 98888776 55544
No 346
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=6.7e-06 Score=93.64 Aligned_cols=136 Identities=20% Similarity=0.278 Sum_probs=87.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccc-------------------eeeEEEEecccc---cC-----CchhhHHH
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------------------VAHIVFVCCSRL---SL-----EKGPIIRQ 642 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~-------------------~~~v~~v~~s~L---~~-----~~~~~~~~ 642 (1052)
+..+||+||+|+|||++|+.+|+.+.+.... ...+.+++...- .+ -..+.++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 4569999999999999999999998643210 123445544210 11 12344444
Q ss_pred HhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCC
Q 001560 643 ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI 722 (1052)
Q Consensus 643 ~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L 722 (1052)
....+.........-|+++|+++.+-. ...+.|+..+++... .+.+|.+|..++.+
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~~---------~~~~Ilvth~~~~l 156 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPPP---------QVVFLLVSHAADKV 156 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCcC---------CCEEEEEeCChHhC
Confidence 333332222233456999999998831 334556666666532 25577788888899
Q ss_pred chhhhcCCCcceeeeCCCCCHHHHHHHHHH
Q 001560 723 PQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1052)
Q Consensus 723 d~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~ 752 (1052)
.+.+++ |.. .+.|++|+.++..+.|..
T Consensus 157 l~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 157 LPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 988888 554 788999999987777653
No 347
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=2.4e-06 Score=84.07 Aligned_cols=120 Identities=22% Similarity=0.287 Sum_probs=71.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
+.++|+||.|+||||+++.+++.+. ....+.++++.+.......... +.+.+.+.....+.+|||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~-- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP-- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc--
Confidence 4589999999999999999998875 1156788888775532211111 2233332222366899999998872
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCC----chhhhcCCCcceeeeCCCCCHHH
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI----PQSLTSSGRFDFHVQLPAPAASE 745 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L----d~aL~r~gRF~~~i~i~~Pd~~e 745 (1052)
.+...+..+.+... ++.+|.|++....+ ...+ .||+. .+++.+.+..|
T Consensus 75 --------------~~~~~lk~l~d~~~----------~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 --------------DWEDALKFLVDNGP----------NIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred --------------cHHHHHHHHHHhcc----------CceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 23334444444321 24455555443333 2222 24665 67888888765
No 348
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=2.2e-06 Score=102.68 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=65.2
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC---------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1052)
+..|++++|++.+++.+...+.. -+.+..+|||||+|+|||++|+++|+.+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 47899999999999999888762 123344699999999999999999988731
Q ss_pred ---------eEEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ---------~~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
.++.+++++- ..-..+|++.+.+.. +...|++|||+|.+.
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt 130 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT 130 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC
Confidence 2333332210 113467777665432 234599999999984
No 349
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.31 E-value=1.5e-06 Score=108.38 Aligned_cols=70 Identities=11% Similarity=-0.041 Sum_probs=49.0
Q ss_pred ccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHH-hcCCCEEEEEeCCC
Q 001560 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA-TAAAPCLLFFDEFD 947 (1052)
Q Consensus 876 ~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A-~~~~p~ILfiDEid 947 (1052)
...++.++.|..|+||+.+.+++|+..+.+++++....- ...|+-+.++....-.+ -.+...++||||--
T Consensus 1834 ~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~e~~~hr~--~~~~Df~d~lk~~~~~~~~~~~r~Cl~I~Esi 1904 (3164)
T COG5245 1834 VVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRD--ELTGDFRDSLKVQDLRRNIHGGRECLFIFESI 1904 (3164)
T ss_pred HhccchhhhhhhhhhhHHHHHHHHHhCccchhhhhcccc--cchhhHHHHHHHHHHhccccCCceEEEEecCC
Confidence 456789999999999999999999988888887765432 22555555555444333 23344588888753
No 350
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.31 E-value=2e-06 Score=85.68 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=57.3
Q ss_pred cchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCch
Q 001560 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG 637 (1052)
Q Consensus 558 G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~ 637 (1052)
|....++.+++++..+.... .+|||+|++||||+++|++++...... ...++.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~a~~~-------------~pvli~GE~GtGK~~~A~~lh~~~~~~---~~~~~~~~~~~~~---- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSS-------------SPVLITGEPGTGKSLLARALHRYSGRA---NGPFIVIDCASLP---- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSS-------------S-EEEECCTTSSHHHHHHCCHHTTTTC---CS-CCCCCHHCTC----
T ss_pred CCCHHHHHHHHHHHHHhCCC-------------CcEEEEcCCCCCHHHHHHHHHhhcCcc---CCCeEEechhhCc----
Confidence 56678888999887775443 679999999999999999999865421 2345556776644
Q ss_pred hhHHHHhhhhHHHhhccCCeEEEEeccchhc
Q 001560 638 PIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1052)
Q Consensus 638 ~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1052)
.++++.+ .+..|+|+|+|.+-
T Consensus 62 -------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 62 -------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp -------HHHHHHC---TTSEEEEECGCCS-
T ss_pred -------HHHHHHc---CCCEEEECChHHCC
Confidence 2344443 66799999999983
No 351
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.30 E-value=4.8e-06 Score=100.20 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=52.9
Q ss_pred CcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhh--------------hhc--------------cc
Q 001560 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK--------------YIG--------------AS 922 (1052)
Q Consensus 874 ~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~--------------yvG--------------es 922 (1052)
|+.+.+-+|+.||||+|||+++-.++... |.+.+.+...+-.+. |.- ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67788889999999999999986665543 556666655332211 100 01
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 923 EQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 923 e~~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
+..+..+.+.+....|.+++||=+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4456677777777788899999887764
No 352
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=5.1e-06 Score=84.37 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=81.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhccCccce---eeEEEEecccccCCchh-hHHHHhhhh-----------H-HHhhccC
Q 001560 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLV---AHIVFVCCSRLSLEKGP-IIRQALSNF-----------I-SEALDHA 655 (1052)
Q Consensus 592 ~vLL~GppGTGKTtLAraLA~~L~~~~~~~---~~v~~v~~s~L~~~~~~-~~~~~l~~~-----------f-~~a~~~~ 655 (1052)
-++|+|+||+|||++++.++..+....... ..+++..+......... .+...+... + ..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 389999999999999999999887554322 34555666554432211 122111111 1 1122345
Q ss_pred CeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCC--CchhhhcCCCcc
Q 001560 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD 733 (1052)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~--Ld~aL~r~gRF~ 733 (1052)
..+|+||.+|.+...... .....+...|..++..... ..+.++.|+++... +...+.. .
T Consensus 82 ~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~~~~--------~~~~liit~r~~~~~~~~~~~~~---~- 142 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQALP--------PGVKLIITSRPRAFPDLRRRLKQ---A- 142 (166)
T ss_pred ceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhhccC--------CCCeEEEEEcCChHHHHHHhcCC---C-
Confidence 668999999999631111 1112344444444443111 12445555543322 2222222 1
Q ss_pred eeeeCCCCCHHHHHHHHHHHHhh
Q 001560 734 FHVQLPAPAASERKAILEHEIQR 756 (1052)
Q Consensus 734 ~~i~i~~Pd~~eR~~IL~~~l~~ 756 (1052)
..+.+++.+.+++.++++.+++.
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhhc
Confidence 46889999999999999987753
No 353
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.30 E-value=2.3e-06 Score=104.54 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=63.1
Q ss_pred cccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc----------CCeEEEeechh
Q 001560 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPE 913 (1052)
Q Consensus 844 ~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~----------~~~~i~v~~s~ 913 (1052)
+.|.+.++..+.|...+.-.+. +..+...++++|+||||||++++.+.+++ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 4566666666666666552211 11122234699999999999999997765 25678899854
Q ss_pred hhhh----------hh------c-ccHHHHHHHHHHHh--cCCCEEEEEeCCCccCC
Q 001560 914 LLNK----------YI------G-ASEQAVRDIFSKAT--AAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 914 l~~~----------yv------G-ese~~ir~lf~~A~--~~~p~ILfiDEid~l~~ 951 (1052)
+... .. | .+...+..+|.... .....||+|||||.|..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k 883 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT 883 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc
Confidence 3211 11 1 12345667776652 23456999999999975
No 354
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.30 E-value=7e-07 Score=110.56 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=37.7
Q ss_pred ccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 843 ~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
|.+|+|++.++..+.-....+ ...++||.|++|||||++|+++++.+
T Consensus 3 f~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 678999999888775444311 12579999999999999999999987
No 355
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.29 E-value=3.7e-06 Score=90.36 Aligned_cols=164 Identities=23% Similarity=0.319 Sum_probs=85.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc-CC---------------------------------
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS-LE--------------------------------- 635 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~-~~--------------------------------- 635 (1052)
...++|+||.|+|||+|++.+.+.+.... ...+++++.... ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~---~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKG---YKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--E---ECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcC---CcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 36799999999999999999999874211 112222221100 00
Q ss_pred -chhhHHHHhhhhHHHhhc-cCCeEEEEeccchhc-cCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEE
Q 001560 636 -KGPIIRQALSNFISEALD-HAPSIVIFDNLDSII-SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (1052)
Q Consensus 636 -~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~-~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~v 712 (1052)
........+..++..... ....||+|||++.+. ... ....+...|...++...... ++.+
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~-------~~~~ 159 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----------EDKDFLKSLRSLLDSLLSQQ-------NVSI 159 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----------TTHHHHHHHHHHHHH----T-------TEEE
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----------chHHHHHHHHHHHhhccccC-------CceE
Confidence 001112223333333332 234899999999996 211 11245555666665533221 2444
Q ss_pred EEecCCCCCC------chhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCC--CHHHHHHHhhhcCCCC
Q 001560 713 VASAQSLEKI------PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC--SDEILLDVASKCDGYD 777 (1052)
Q Consensus 713 Iattn~~~~L------d~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~--sd~~l~~La~~teG~s 777 (1052)
|.++...... ...+. +|+.. +.+++.+.++..++++..+... ..+ +++.++.+...+.|+.
T Consensus 160 v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 160 VITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp EEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred EEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 4444432111 11122 37775 9999999999999999887765 544 8888999999998853
No 356
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.29 E-value=1e-05 Score=97.05 Aligned_cols=205 Identities=14% Similarity=0.092 Sum_probs=119.5
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccC
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~ 634 (1052)
.+.|....+.++.+.+..+... ...+++.|.+||||+++|+++.+..... ..+++.++|..+..
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~-------------~~~vli~Ge~GtGK~~~A~~ih~~~~~~---~~~~~~~~c~~~~~ 198 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRS-------------DITVLINGESGTGKELVARALHRHSPRA---NGPFIALNMAAIPK 198 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCc-------------CCeEEEECCCCCCHHHHHHHHHHhCCCC---CCCeEEEeCCCCCH
Confidence 4566777778887777554322 2569999999999999999999864422 26788999988743
Q ss_pred CchhhHH-HHhhhhHH--------HhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cccCC
Q 001560 635 EKGPIIR-QALSNFIS--------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRKS 703 (1052)
Q Consensus 635 ~~~~~~~-~~l~~~f~--------~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~--~~~~~ 703 (1052)
......- ......|. ......++.|||||++.|-. .....|.+.++... ..+..
T Consensus 199 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~---------------~~q~~ll~~l~~~~~~~~~~~ 263 (463)
T TIGR01818 199 DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL---------------DAQTRLLRVLADGEFYRVGGR 263 (463)
T ss_pred HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH---------------HHHHHHHHHHhcCcEEECCCC
Confidence 2211100 00000000 01123467899999998831 22333444443211 00000
Q ss_pred ccCcCcEEEEEecCCC-------CCCchhhhcCCCcc-eeeeCCCCC--HHHHHHHHHHHHhh----cc---CCCCHHHH
Q 001560 704 SCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQR----RS---LECSDEIL 766 (1052)
Q Consensus 704 ~~~~~~V~vIattn~~-------~~Ld~aL~r~gRF~-~~i~i~~Pd--~~eR~~IL~~~l~~----~~---~~~sd~~l 766 (1052)
.....++.+|++++.. ..+.+.|.. |+. ..|++|+.. .++...++.+++.. .+ ..++++.+
T Consensus 264 ~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 341 (463)
T TIGR01818 264 TPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEAL 341 (463)
T ss_pred ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 0111246788887653 123334443 443 356777665 35556666665542 22 35789999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHH
Q 001560 767 LDVASKCDGYDAYDLEILVDRTVHAA 792 (1052)
Q Consensus 767 ~~La~~teG~s~~DL~~Lv~~A~~~a 792 (1052)
..|..+.---+-++|++++++++..+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 99888765557789999999987544
No 357
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=1.6e-05 Score=89.87 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=100.3
Q ss_pred cccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccc---------------
Q 001560 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL--------------- 620 (1052)
Q Consensus 556 l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~--------------- 620 (1052)
.+|+....+.+.+.+. . ...+..+||+||.|+||+++|+++|+.+-+....
T Consensus 5 yPWl~~~~~~l~~~~~----~----------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~ 70 (319)
T PRK06090 5 YPWLVPVWQNWKAGLD----A----------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQS 70 (319)
T ss_pred cccHHHHHHHHHHHHH----c----------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHc
Confidence 3566666666655331 1 1223569999999999999999999998653211
Q ss_pred --eeeEEEEecccc-cCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001560 621 --VAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1052)
Q Consensus 621 --~~~v~~v~~s~L-~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~ 697 (1052)
...+..+....- ..-..++++...+.+.........-|++||++|.+-. .-.+.|+..+++.
T Consensus 71 g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEP 135 (319)
T PRK06090 71 GNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEEP 135 (319)
T ss_pred CCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcCC
Confidence 012333333210 1123344444332222222333446999999999841 3456677777775
Q ss_pred ccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHH
Q 001560 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1052)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~ 752 (1052)
.. ++++|..|+.++.+.|.+++ |.. .+.|++|+.++..+.+..
T Consensus 136 p~---------~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 AP---------NCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CC---------CeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 43 47888899999999999999 765 789999999988777753
No 358
>PRK15115 response regulator GlrR; Provisional
Probab=98.26 E-value=9.2e-06 Score=96.96 Aligned_cols=196 Identities=14% Similarity=0.233 Sum_probs=114.4
Q ss_pred cccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCC
Q 001560 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1052)
Q Consensus 556 l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~ 635 (1052)
+.|....+..+.+.+..+... ...++|+|++|||||++|+++.+..... ..+++.++|..+...
T Consensus 136 lig~s~~~~~~~~~~~~~a~~-------------~~~vli~Ge~GtGk~~lA~~ih~~s~r~---~~~f~~i~c~~~~~~ 199 (444)
T PRK15115 136 IVTRSPLMLRLLEQARMVAQS-------------DVSVLINGQSGTGKEILAQAIHNASPRA---SKPFIAINCGALPEQ 199 (444)
T ss_pred ccccCHHHHHHHHHHHhhccC-------------CCeEEEEcCCcchHHHHHHHHHHhcCCC---CCCeEEEeCCCCCHH
Confidence 445555666666655444322 2469999999999999999999865422 257899999987432
Q ss_pred chhhHHHHhhhhHHH---------------hhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-
Q 001560 636 KGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE- 699 (1052)
Q Consensus 636 ~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~- 699 (1052)
..+ . .+|.. ......+.|||||+|.|-. .....|.+.++.-.-
T Consensus 200 ~~~---~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~---------------~~q~~L~~~l~~~~~~ 258 (444)
T PRK15115 200 LLE---S---ELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA---------------PLQVKLLRVLQERKVR 258 (444)
T ss_pred HHH---H---HhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCH---------------HHHHHHHHHHhhCCEE
Confidence 211 1 11111 1112456999999999842 233334444443210
Q ss_pred -ccCCccCcCcEEEEEecCCCCCCchhhhcCCCcc-------eeeeCCCCCHHHHHH----HHHHHHhh----cc---CC
Q 001560 700 -KRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD-------FHVQLPAPAASERKA----ILEHEIQR----RS---LE 760 (1052)
Q Consensus 700 -~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~-------~~i~i~~Pd~~eR~~----IL~~~l~~----~~---~~ 760 (1052)
.+........+.+|++++. ++...+ ..|+|. ..+.+..|...+|.+ +++++++. .+ ..
T Consensus 259 ~~g~~~~~~~~~rii~~~~~--~l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~ 335 (444)
T PRK15115 259 PLGSNRDIDIDVRIISATHR--DLPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRA 335 (444)
T ss_pred eCCCCceeeeeEEEEEeCCC--CHHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCC
Confidence 0000111125788888874 233322 223441 134555566666642 44555442 12 24
Q ss_pred CCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 761 ~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
++++.+..|..+.-.-+.++|++++++++..
T Consensus 336 ~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 336 FSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 7899999999888555889999999988743
No 359
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.24 E-value=9.5e-06 Score=99.73 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=62.0
Q ss_pred cEEEEEecCCC--CCCchhhhcCCCcc---eeeeCC---CCCHHHHHHHHHHH---Hhhc--cCCCCHHHHHHHhhhc--
Q 001560 709 PIAFVASAQSL--EKIPQSLTSSGRFD---FHVQLP---APAASERKAILEHE---IQRR--SLECSDEILLDVASKC-- 773 (1052)
Q Consensus 709 ~V~vIattn~~--~~Ld~aL~r~gRF~---~~i~i~---~Pd~~eR~~IL~~~---l~~~--~~~~sd~~l~~La~~t-- 773 (1052)
.+.+|++++.. ..+++.|+. ||. ..+.++ +.+.+.|.++.+.+ +++. ...++++.+..+.+..
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57889998874 578999998 888 555543 23455665555433 3333 2347777766654321
Q ss_pred -CC------CCHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccccccc
Q 001560 774 -DG------YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1052)
Q Consensus 774 -eG------~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1052)
.| ...++|..+++.|...|..+ ....++.+|+.+|++.
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~-----------~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS-----------GKVYVTAEHVLKAKKL 390 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc-----------CCceecHHHHHHHHHH
Confidence 11 24688999999885433222 2245778888777654
No 360
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.3e-05 Score=96.31 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=86.7
Q ss_pred cccccchhHHHHHHHHHHHhcCCCccccccccCC-CCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc-
Q 001560 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL-PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR- 631 (1052)
Q Consensus 554 ~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~-~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~- 631 (1052)
..++|.+.++..|-+.|...-... .- .+...+||.||.|+|||-||+++|..+.... ..++.+|++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl--------~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse---~~~IriDmse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGL--------KDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE---ENFIRLDMSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhccc--------CCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc---cceEEechhhh
Confidence 367788888888877775432111 11 3567799999999999999999999985332 5678888874
Q ss_pred -----ccCC---chhhHHHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc--cc
Q 001560 632 -----LSLE---KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--KR 701 (1052)
Q Consensus 632 -----L~~~---~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~--~~ 701 (1052)
+.+. +.|... ...+.+..+....+||+|||+|..-+ .+...|+.++|.-.- ..
T Consensus 631 ~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkAh~---------------~v~n~llq~lD~GrltDs~ 693 (898)
T KOG1051|consen 631 QEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKAHP---------------DVLNILLQLLDRGRLTDSH 693 (898)
T ss_pred hhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhcCH---------------HHHHHHHHHHhcCccccCC
Confidence 3332 222211 22233333444458999999988631 455666666665432 12
Q ss_pred CCccCcCcEEEEEecCC
Q 001560 702 KSSCGIGPIAFVASAQS 718 (1052)
Q Consensus 702 ~~~~~~~~V~vIattn~ 718 (1052)
+......+++||.|+|.
T Consensus 694 Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 694 GREVDFKNAIFIMTSNV 710 (898)
T ss_pred CcEeeccceEEEEeccc
Confidence 22334558999999775
No 361
>PRK06893 DNA replication initiation factor; Validated
Probab=98.23 E-value=1.9e-06 Score=93.59 Aligned_cols=64 Identities=13% Similarity=0.213 Sum_probs=42.6
Q ss_pred CceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
..++|+||||||||++++++|+++ +.....++..+.. ....++++..+ ...+|+|||++.+.++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGN 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCC
Confidence 347999999999999999999886 3344444443211 11123344432 3469999999999653
No 362
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=1.6e-06 Score=102.62 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=52.0
Q ss_pred CceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
.+++||||+|+|||+|++++++.+ +..++.+++.++...+...-...-...|.... ...++|+|||++.+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSG 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcC
Confidence 469999999999999999999876 78889998887765544322111122344432 3456999999999864
No 363
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.23 E-value=1.6e-05 Score=85.91 Aligned_cols=132 Identities=18% Similarity=0.211 Sum_probs=88.8
Q ss_pred CCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecC-----------CCCCCc
Q 001560 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ-----------SLEKIP 723 (1052)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn-----------~~~~Ld 723 (1052)
-|.||||||+|.|- - .-..+|.+.++.-. .++++++|.. +|+.+|
T Consensus 288 vpGVLFIDEvHMLD-----------I----EcFsFlNrAlE~d~---------~PiiimaTNrgit~iRGTn~~SphGiP 343 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLD-----------I----ECFSFLNRALENDM---------APIIIMATNRGITRIRGTNYRSPHGIP 343 (454)
T ss_pred ccceEEEeeehhhh-----------h----HHHHHHHHHhhhcc---------CcEEEEEcCCceEEeecCCCCCCCCCc
Confidence 47899999998872 1 33455555555421 1455555422 355677
Q ss_pred hhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhcccCCcc
Q 001560 724 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (1052)
Q Consensus 724 ~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~r~~~~~~~~ 803 (1052)
-.|+. |.- .+.-.+++.++..+||+..++.....+.++.+..|......-+-+---.|+..|...+.+|.
T Consensus 344 ~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk------- 413 (454)
T KOG2680|consen 344 IDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK------- 413 (454)
T ss_pred HHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc-------
Confidence 77776 554 67888999999999999999988888999988888777665555555556666655555552
Q ss_pred ccccccccccccccccccccc
Q 001560 804 EKHIKPTLVRDDFSQAMHEFL 824 (1052)
Q Consensus 804 ~~~~~~~lt~eDf~~Al~~~~ 824 (1052)
...+..+|+.++..-|.
T Consensus 414 ----~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 414 ----GKVVEVDDIERVYRLFL 430 (454)
T ss_pred ----CceeehhHHHHHHHHHh
Confidence 24466677777666553
No 364
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=1.8e-06 Score=104.12 Aligned_cols=72 Identities=25% Similarity=0.420 Sum_probs=54.9
Q ss_pred ceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 880 NVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 880 ~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
.++|||++|||||+|++++++.+ +..++.+++.++++.|...-.....+.|.+. -...++|+|||++.+.++
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDK 392 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCC
Confidence 49999999999999999999876 5788999999988777654333223344432 224579999999999754
No 365
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.21 E-value=2.2e-06 Score=102.01 Aligned_cols=68 Identities=25% Similarity=0.455 Sum_probs=52.2
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHH--------hcCCCEEEEEeCCCc
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA--------TAAAPCLLFFDEFDS 948 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A--------~~~~p~ILfiDEid~ 948 (1052)
+.+-+||+||||-||||||+.+|+++|+.++++|++|-- +...++.....| ....|.+|+|||||.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 345578999999999999999999999999999999732 333333333333 125789999999997
Q ss_pred cC
Q 001560 949 IA 950 (1052)
Q Consensus 949 l~ 950 (1052)
-.
T Consensus 399 a~ 400 (877)
T KOG1969|consen 399 AP 400 (877)
T ss_pred Cc
Confidence 64
No 366
>PRK08116 hypothetical protein; Validated
Probab=98.18 E-value=5.4e-06 Score=92.04 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=45.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhH----HHHhhhhHHHhhccCCeEEEEeccc
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII----RQALSNFISEALDHAPSIVIFDNLD 665 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~----~~~l~~~f~~a~~~~PsIL~IDEiD 665 (1052)
+.+++|+|++|||||+||.++|+++.... ..+++++..++........ .....+++... ....+|+|||+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg 188 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLG 188 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEeccc
Confidence 35799999999999999999999986432 5577777665432211110 00111222222 345699999995
Q ss_pred h
Q 001560 666 S 666 (1052)
Q Consensus 666 ~ 666 (1052)
.
T Consensus 189 ~ 189 (268)
T PRK08116 189 A 189 (268)
T ss_pred C
Confidence 4
No 367
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.18 E-value=2.4e-06 Score=102.21 Aligned_cols=47 Identities=28% Similarity=0.459 Sum_probs=36.1
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
..++++.|+..+++.+.-.+ ....+++|.||||||||++|+.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 36788999888876654332 233579999999999999999999754
No 368
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.16 E-value=8.2e-05 Score=89.51 Aligned_cols=200 Identities=16% Similarity=0.284 Sum_probs=105.9
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc---
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR--- 631 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~--- 631 (1052)
+|.-...-+++|.+-|...+.. ....+-+||+|||||||||+++.||++++-... ...+...
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~----------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~-----Ew~np~~~~~ 84 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSG----------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQ-----EWINPVSFRE 84 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhcc----------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeE-----EecCCCCccc
Confidence 4444556777887777544322 123346889999999999999999999883211 0111111
Q ss_pred -------ccCC--chh---hHHHHhhhh-HHHhh-----------ccCCeEEEEeccchhccCCCCCCCCCCchhHHHHH
Q 001560 632 -------LSLE--KGP---IIRQALSNF-ISEAL-----------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 687 (1052)
Q Consensus 632 -------L~~~--~~~---~~~~~l~~~-f~~a~-----------~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~ 687 (1052)
..+. ..+ .....+.++ +..+. ...+.||+|||+-.++. ... ..+.
T Consensus 85 ~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~----------~~~-~~f~ 153 (519)
T PF03215_consen 85 SDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH----------RDT-SRFR 153 (519)
T ss_pred cccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc----------hhH-HHHH
Confidence 0000 000 001112222 11111 12467999999966541 111 2344
Q ss_pred HHHHHHHHHhccccCCccCcCcEEEEEe-cCC------C--------CCCchhhhcCCCcceeeeCCCCCHHHHHHHHHH
Q 001560 688 KFLVDIMDEYGEKRKSSCGIGPIAFVAS-AQS------L--------EKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1052)
Q Consensus 688 ~~L~~~ld~~~~~~~~~~~~~~V~vIat-tn~------~--------~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~ 752 (1052)
+.|...+.. ... .++++|.| +.. . ..+++.+....+.. +|.|.+-...-..+-|+.
T Consensus 154 ~~L~~~l~~----~~~----~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 154 EALRQYLRS----SRC----LPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHHHHc----CCC----CCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHH
Confidence 444443332 111 05666666 211 1 13455555533443 789988888777777776
Q ss_pred HHhhc-----c-CCCC--HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 001560 753 EIQRR-----S-LECS--DEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1052)
Q Consensus 753 ~l~~~-----~-~~~s--d~~l~~La~~teG~s~~DL~~Lv~~A~~~a~ 793 (1052)
.+... + ...+ .+.++.|+..+.| ||+..+......+.
T Consensus 225 I~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 225 ILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 66543 1 1222 3457888877655 88777765544443
No 369
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.16 E-value=5.4e-06 Score=94.22 Aligned_cols=93 Identities=24% Similarity=0.368 Sum_probs=62.6
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPEL 914 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~l 914 (1052)
+..|+++.|.+++.+.++..+... ...+++|+||||||||++|+++++.+ ..+++.+++++-
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 468999999999999998877521 11258999999999999999999987 234566655432
Q ss_pred hhhhhcccHHHHHHHH-HHHhc-----CCCEEEEEeCCCccCC
Q 001560 915 LNKYIGASEQAVRDIF-SKATA-----AAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 915 ~~~yvGese~~ir~lf-~~A~~-----~~p~ILfiDEid~l~~ 951 (1052)
.+ ...+++.+ +.++. ..+.+++|||+|.+..
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS 116 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH
Confidence 11 11122222 22211 2356999999999954
No 370
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.15 E-value=4.6e-06 Score=90.92 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=52.9
Q ss_pred CceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcc---cHHHHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGe---se~~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
.+++|+|+||||||++|.++|..+ |..++.++.++++..+.+. .+....++++... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 479999999999999999999988 7888889999988654332 1222334555543 45699999998874
No 371
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=98.15 E-value=2.6e-05 Score=80.10 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=111.3
Q ss_pred cceeeCCHHHHHHHhhccccCCCCceEEEEEEeC-CCCeEEEEecCCcCCCCceEecHHHHhhcCCCCCCEEEEEEecCc
Q 001560 13 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSR-SNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNV 91 (1052)
Q Consensus 13 ~~~v~lp~~l~~~l~~~~~~~~~~q~~~~el~~~-~~~~~~~gW~g~~s~~~~iei~~~~a~~lgl~~~~~v~~~~~~~~ 91 (1052)
+.=|-||++..+.|.+.+. ..-...+|+.. .++..|+|=-..++..+.|-+.+-+.+.|||++|+.|.|+ ..+.
T Consensus 25 gdKiiLP~s~L~~L~~~~~----~~P~~F~i~n~~~~~~th~GVlEFsA~eG~i~lP~wmm~~L~l~~g~~V~v~-~~~L 99 (176)
T PF03152_consen 25 GDKIILPPSALDELSRLNI----PYPMLFEISNPDNGKRTHCGVLEFSAEEGTIYLPPWMMQNLGLQEGDIVRVE-YVSL 99 (176)
T ss_dssp TTEEEE-HHHHHHHHHTT------SS-EEEEEETTTTEEEEEEEEEE--CTTEEEE-CHHHHHHT--TTEEEEEE-EEE-
T ss_pred CCeEEcCHHHHHHHHhccC----CCCEEEEEecCCCCcEEEEEEEEeEcCCCeEEeCccHHhhcCCCCCCEEEEE-EeEC
Confidence 3457899999999998654 23467788765 4467999977777777899999999999999999999999 5799
Q ss_pred ccceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEeEEecCceEEEEEEcccCCCCCeEEecCCCEEEEcc
Q 001560 92 LKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAP 170 (1052)
Q Consensus 92 ~~~~~v~veP~t~dDWEilel~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~l~~~tev~vaP 170 (1052)
|.++.|.+.|.+.+=.+ |+-+-..||.+| .+--+++.|.++.+.- ++..-.|.|..+.|+..+..+..|-||=++|
T Consensus 100 Pkgt~vkLqP~~~~F~~-i~n~KavLE~~L-r~ystLT~Gd~I~i~~-~~~~y~l~V~e~kP~~aV~IidTDl~vDf~~ 175 (176)
T PF03152_consen 100 PKGTFVKLQPQSSDFLD-ISNPKAVLERAL-RNYSTLTKGDTISIEY-NNKTYELDVVEVKPENAVSIIDTDLEVDFEP 175 (176)
T ss_dssp ---SEEEEEESCHHHHC-SS-HHHHHHHHH-CC-SEEETTSEEEEEC-TTEEEEEEEEEECSSSCEE-SSS-SEEEE--
T ss_pred CCCCEEEEeECCCcccc-ccchHHHHHhhc-ccCceeecCCEEEEEe-CCEEEEEEEEEEcCCCEEEEEeCceEEEecC
Confidence 99999999999875444 566667899999 8899999999999996 6677799999999999888999999887765
No 372
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.14 E-value=3.6e-07 Score=88.40 Aligned_cols=72 Identities=29% Similarity=0.410 Sum_probs=37.1
Q ss_pred ceeEecCCCCchhhHHHHHHHHcCCeEEEeech-hhh-hhhhcccHHHH-HHHHHHHhc-CCCEEEEEeCCCccCC
Q 001560 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP-ELL-NKYIGASEQAV-RDIFSKATA-AAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 880 ~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s-~l~-~~yvGese~~i-r~lf~~A~~-~~p~ILfiDEid~l~~ 951 (1052)
|+||.|+||+|||++|+++|+.+|..|..|.+. +++ +...|..--+- ...|+-.+. .-..|+|+||+....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH
Confidence 689999999999999999999999999998774 443 11111100000 001100000 0012999999998866
No 373
>PRK08116 hypothetical protein; Validated
Probab=98.14 E-value=5.6e-06 Score=91.90 Aligned_cols=70 Identities=26% Similarity=0.412 Sum_probs=50.5
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhh----cccHHHHHHHHHHHhcCCCEEEEEeCCCcc
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI----GASEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yv----Gese~~ir~lf~~A~~~~p~ILfiDEid~l 949 (1052)
+.+++|+|+||||||+||.++|+.+ +.+++.++.++++..+. +.+.....++++... ...+|+|||++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 3579999999999999999999986 78899999998876543 222222334444443 2349999999653
No 374
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=7.6e-06 Score=100.58 Aligned_cols=93 Identities=19% Similarity=0.320 Sum_probs=67.2
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcC----------------
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---------------- 903 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~---------------- 903 (1052)
+..|++++|++.+++.|...+.. -+.+..+|||||+|+|||++|+++|+.+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 46899999999999999888762 12334589999999999999999999864
Q ss_pred ---------CeEEEeechhhhhhhhcccHHHHHHHHHHHhcC----CCEEEEEeCCCccC
Q 001560 904 ---------LRFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIA 950 (1052)
Q Consensus 904 ---------~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~----~p~ILfiDEid~l~ 950 (1052)
.+++.+++.+ ..+...++++.+.+... ...|++|||+|.+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls 134 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS 134 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC
Confidence 2334443321 11235677777766433 34599999999993
No 375
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.13 E-value=6.7e-06 Score=89.62 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=41.9
Q ss_pred CceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
.+++|+||||||||++++++++.. |..+..++..+.... ..++++.... ..+|+|||++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC
Confidence 469999999999999999999875 444555555443211 1122222222 24899999999864
No 376
>PRK08181 transposase; Validated
Probab=98.11 E-value=4.7e-06 Score=92.17 Aligned_cols=72 Identities=29% Similarity=0.487 Sum_probs=52.9
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcc-cHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGe-se~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
..+++|+||||||||++|.++|..+ |..++.++.++++..+... .+....+.+.... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC
Confidence 3579999999999999999999755 7788889999988765321 1122334555442 445999999998754
No 377
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.11 E-value=4.9e-06 Score=94.90 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=37.9
Q ss_pred ccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 843 ~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
|..|+|+++++..+.-.+..| ...++++.|+||+|||+++++++..+
T Consensus 3 f~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 678899999998875444321 23679999999999999999999776
No 378
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.10 E-value=7.2e-05 Score=85.19 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=42.1
Q ss_pred ccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhcc
Q 001560 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1052)
Q Consensus 555 ~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~ 616 (1052)
++.|++++++++.+.+....... ....+.++|+|||||||||+|++|++.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~---------~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGL---------EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68899999999999886543211 123456899999999999999999999874
No 379
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.09 E-value=5.6e-06 Score=93.17 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=57.8
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcC--CeEEEeechhhhhhh
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKY 918 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~--~~~i~v~~s~l~~~y 918 (1052)
..-+.++|+.+.+++.--.+.+. +.+--..+++||.||||||||.+|-++|+++| .||+.++++++++.-
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mI--------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e 92 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMI--------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSE 92 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHH--------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTT
T ss_pred eccccccChHHHHHHHHHHHHHH--------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecc
Confidence 34567899999998875544421 11222356899999999999999999999996 899999999998876
Q ss_pred hcccHHHHHHHHHHH
Q 001560 919 IGASEQAVRDIFSKA 933 (1052)
Q Consensus 919 vGese~~ir~lf~~A 933 (1052)
+..+| .+.+.|++|
T Consensus 93 ~kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 93 VKKTE-ALTQAFRRA 106 (398)
T ss_dssp C-HHH-HHHHHHHCS
T ss_pred cCchH-HHHHHHHHh
Confidence 66555 455666665
No 380
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.08 E-value=3.8e-06 Score=88.36 Aligned_cols=46 Identities=28% Similarity=0.413 Sum_probs=30.6
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhc
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~ 615 (1052)
|+++.|.+..+..+.- ... . +.|+|++||||||||++|+.+...|.
T Consensus 2 f~dI~GQe~aKrAL~i--AAa-G--------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEI--AAA-G--------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHH--HHH-C--------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHH--HHc-C--------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 5677787766554421 111 1 25799999999999999999998765
No 381
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.08 E-value=4.2e-05 Score=92.90 Aligned_cols=78 Identities=22% Similarity=0.166 Sum_probs=48.4
Q ss_pred CcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh--------------hhh------------c--cc
Q 001560 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN--------------KYI------------G--AS 922 (1052)
Q Consensus 874 ~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~--------------~yv------------G--es 922 (1052)
|+..+..++++|+||+|||+++..++... |.+.+.+...+-.. +|. . .-
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56777789999999999999997766433 66666664432110 010 0 00
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 923 EQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 923 e~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
+..+..+.+......+.+++||=+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22233444444556778999998887753
No 382
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.07 E-value=1.9e-05 Score=94.74 Aligned_cols=26 Identities=46% Similarity=0.735 Sum_probs=23.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhc
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~ 615 (1052)
+.+++|.||||||||++++.++..+.
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcccC
Confidence 36799999999999999999998654
No 383
>PRK12377 putative replication protein; Provisional
Probab=98.07 E-value=8.6e-06 Score=89.06 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=50.1
Q ss_pred CceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhccc--HHHHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS--EQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGes--e~~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
.+++|+||||||||++|.++|+.+ |..++.++.++++..+-..- .....++++.. ....+|+|||++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC
Confidence 579999999999999999999887 67788888888876432110 01122344443 344599999998764
No 384
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.07 E-value=0.0001 Score=82.38 Aligned_cols=160 Identities=19% Similarity=0.302 Sum_probs=85.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH--hccCccceeeEEEEecccccC--------------C-----chhhHHHHhhhhH
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKS--LEHHKDLVAHIVFVCCSRLSL--------------E-----KGPIIRQALSNFI 648 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~--L~~~~~~~~~v~~v~~s~L~~--------------~-----~~~~~~~~l~~~f 648 (1052)
.+-+.|+|++|+|||+||+.+++. ..... ..++.++.+.-.. . ....... ..+.+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f---~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l 94 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRF---DGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEE-LQDQL 94 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCC---TEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHH-HHHHH
T ss_pred eEEEEEEcCCcCCcceeeeeccccccccccc---cccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 366999999999999999999988 33333 2344444432111 0 0111222 22223
Q ss_pred HHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhc
Q 001560 649 SEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS 728 (1052)
Q Consensus 649 ~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r 728 (1052)
.......+.+|+|||++... .+ ..+...+..... +..+|.||.... +-..+.
T Consensus 95 ~~~L~~~~~LlVlDdv~~~~----------------~~-~~l~~~~~~~~~---------~~kilvTTR~~~-v~~~~~- 146 (287)
T PF00931_consen 95 RELLKDKRCLLVLDDVWDEE----------------DL-EELREPLPSFSS---------GSKILVTTRDRS-VAGSLG- 146 (287)
T ss_dssp HHHHCCTSEEEEEEEE-SHH----------------HH--------HCHHS---------S-EEEEEESCGG-GGTTHH-
T ss_pred hhhhccccceeeeeeecccc----------------cc-cccccccccccc---------cccccccccccc-cccccc-
Confidence 33334558999999997652 11 111111111110 245666776543 222221
Q ss_pred CCCcceeeeCCCCCHHHHHHHHHHHHhhcc---CCCCHHHHHHHhhhcCCCCHHHHHHH
Q 001560 729 SGRFDFHVQLPAPAASERKAILEHEIQRRS---LECSDEILLDVASKCDGYDAYDLEIL 784 (1052)
Q Consensus 729 ~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~---~~~sd~~l~~La~~teG~s~~DL~~L 784 (1052)
.-...++++..+.++-.++++....... ....++....+++.|.| .|-.|+.+
T Consensus 147 --~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 147 --GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp --SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred --cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 1145789999999999999998765443 12224457788999987 45445443
No 385
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.06 E-value=3.3e-05 Score=88.22 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=59.7
Q ss_pred CeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCcCcEEEEEecCCCC-CCchhhhcCC
Q 001560 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1052)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~Ld~aL~r~g 730 (1052)
..||++||+..|- .++...|++.+..-. ..+-...-..++++|||+|+.+ .|-+.|+.
T Consensus 145 RGIlYvDEvnlL~---------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD-- 207 (423)
T COG1239 145 RGILYVDEVNLLD---------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD-- 207 (423)
T ss_pred CCEEEEecccccc---------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--
Confidence 4699999998873 167777777766521 1111111123689999999864 67888888
Q ss_pred CcceeeeCCCC-CHHHHHHHHHHHHhh
Q 001560 731 RFDFHVQLPAP-AASERKAILEHEIQR 756 (1052)
Q Consensus 731 RF~~~i~i~~P-d~~eR~~IL~~~l~~ 756 (1052)
||...+.+..| +.++|.+|.++.+..
T Consensus 208 Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 208 RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 99999988665 678999999876654
No 386
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.06 E-value=2.4e-05 Score=82.59 Aligned_cols=93 Identities=26% Similarity=0.378 Sum_probs=70.3
Q ss_pred cCCCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeech
Q 001560 836 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 912 (1052)
Q Consensus 836 ~~~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s 912 (1052)
+......+.++.|.+.+++.+.+..... .. | .+-.++||+|.-||||++++||+-.++ |..+++|+..
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F-------~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQF-------AE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHH-------Hc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 3444578999999999999987655422 11 1 334689999999999999999999887 7889999998
Q ss_pred hhhhhhhcccHHHHHHHHHHHhcCCC-EEEEEeCC
Q 001560 913 ELLNKYIGASEQAVRDIFSKATAAAP-CLLFFDEF 946 (1052)
Q Consensus 913 ~l~~~yvGese~~ir~lf~~A~~~~p-~ILfiDEi 946 (1052)
++.. +..+++..+..+. =|||+|+.
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDL 148 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDL 148 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCC
Confidence 8753 5567776655433 38888864
No 387
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=2.3e-05 Score=90.20 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=44.2
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL 904 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~ 904 (1052)
+..+++++|.+++.+.+...+.. -+.+..+||+||+|+|||++|+.+|+.+..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 46889999999999999988763 133446999999999999999999988743
No 388
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.06 E-value=1.8e-05 Score=83.14 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=46.3
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCCe------------------------EEEeechhhhhhhhcccHHHHHHHHHH
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLR------------------------FISVKGPELLNKYIGASEQAVRDIFSK 932 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~~------------------------~i~v~~s~l~~~yvGese~~ir~lf~~ 932 (1052)
.+..+||+||+|+|||++|+++|+.+... +..+.... .. -+-..++++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 34569999999999999999999886321 22221110 00 123456666766
Q ss_pred Hhc----CCCEEEEEeCCCccCC
Q 001560 933 ATA----AAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 933 A~~----~~p~ILfiDEid~l~~ 951 (1052)
+.. +...|++|||+|.+..
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE 110 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH
Confidence 644 3456999999999943
No 389
>PRK08181 transposase; Validated
Probab=98.05 E-value=1.7e-05 Score=87.70 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=47.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhh-HHHHhhhhHHHhhccCCeEEEEeccchhc
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDSII 668 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~-~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1052)
..+++|+||||||||+|+.+++.++.... ..+.+++..++....... ......+.+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 36799999999999999999999875322 456667665554321111 001122223222 456799999998763
No 390
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.04 E-value=1.3e-05 Score=91.18 Aligned_cols=70 Identities=21% Similarity=0.361 Sum_probs=50.7
Q ss_pred CceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcc---cHHHHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGe---se~~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
.+++|+||+|||||+||.++|+++ |..++.++.++++..+... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 689999999999999999999987 7889999999987654221 1111122234433 33599999998874
No 391
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.04 E-value=1.9e-05 Score=89.83 Aligned_cols=70 Identities=26% Similarity=0.393 Sum_probs=52.0
Q ss_pred ceeEecCCCCchhhHHHHHHHHcC------------------------CeEEEeechhhhhhhhcccHHHHHHHHHHHhc
Q 001560 880 NVLLYGPPGCGKTHIVGAAAAACS------------------------LRFISVKGPELLNKYIGASEQAVRDIFSKATA 935 (1052)
Q Consensus 880 ~iLL~GppGtGKT~lA~alA~~~~------------------------~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~ 935 (1052)
.+||+||||+|||++|.++|+.+. .++++++.++.... .-....++++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--cchHHHHHHHHHHhcc
Confidence 499999999999999999999986 57888888775431 1123445555554422
Q ss_pred ----CCCEEEEEeCCCccCC
Q 001560 936 ----AAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 936 ----~~p~ILfiDEid~l~~ 951 (1052)
+...|++|||+|.+..
T Consensus 104 ~~~~~~~kviiidead~mt~ 123 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE 123 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH
Confidence 3467999999999965
No 392
>PRK06526 transposase; Provisional
Probab=98.03 E-value=5.7e-06 Score=90.97 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=50.6
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhccc-HHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGes-e~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
.+.+++|+||||||||++|.+++..+ |..+..++.++++....... .......+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 34679999999999999999998775 77777777877776542111 11222333332 3456999999998854
No 393
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.03 E-value=3.3e-06 Score=93.06 Aligned_cols=154 Identities=21% Similarity=0.334 Sum_probs=97.6
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhh
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 916 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~ 916 (1052)
...|+.+++.+...+.+.+.... + .....++|+.|.+||||.++|++.+..+ ..+|+.+||+.+-.
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~----AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------L----AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------h----hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 35677777766655555433221 0 1223469999999999999999999877 78999999976532
Q ss_pred -----hhhcccH--HHHHHHHHHHhcCCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCcc
Q 001560 917 -----KYIGASE--QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVV 989 (1052)
Q Consensus 917 -----~yvGese--~~ir~lf~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~ 989 (1052)
..+|..+ +.-..+|+.|.++ .+|+|||..+.+.= +...-|.++. ++
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~l----QaKLLRFL~D---Gt----------------- 321 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPRL----QAKLLRFLND---GT----------------- 321 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHHH----HHHHHHHhcC---Cc-----------------
Confidence 2233222 3345899999777 89999999996621 1111122221 00
Q ss_pred ccchhhhhhhcccccchhHHHhhhhcCCcccCCeEEEEeCCC------CCCCcceEEEecCCcccccc
Q 001560 990 PYDIYILVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL------EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vi~aTn~------r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
|. .-=+.-+-.-+|.|||||.. ..|+|...+|+++....+.|
T Consensus 322 -----------------FR---RVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~ 369 (511)
T COG3283 322 -----------------FR---RVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNL 369 (511)
T ss_pred -----------------ee---ecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecC
Confidence 00 00001122236999999998 88999999999887766543
No 394
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=2e-05 Score=91.21 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=43.4
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
+..+++|+|.+.+++.+.+.+.. -+.+-.+||+||+|+||+++|.++|+.+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999999988763 2334569999999999999999999877
No 395
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.02 E-value=6.8e-05 Score=89.34 Aligned_cols=199 Identities=17% Similarity=0.207 Sum_probs=111.0
Q ss_pred cccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCC
Q 001560 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1052)
Q Consensus 556 l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~ 635 (1052)
+.|....+..+.+.+..+.. ....++++|.+||||+++|+++...... ...+++.++|..+...
T Consensus 141 lig~s~~~~~~~~~i~~~~~-------------~~~~vli~ge~g~gk~~~a~~ih~~s~~---~~~~~i~~~c~~~~~~ 204 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-------------SEATVLIHGDSGTGKELVARAIHASSAR---SEKPLVTLNCAALNES 204 (441)
T ss_pred eEecCHHHHHHHHHHhhccC-------------CCCeEEEEecCCCCHHHHHHHHHHcCCC---CCCCeeeeeCCCCCHH
Confidence 44556666666666644432 2356999999999999999999876432 2267899999876532
Q ss_pred chhhHHHHhhh----hHH--------HhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 001560 636 KGPIIRQALSN----FIS--------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (1052)
Q Consensus 636 ~~~~~~~~l~~----~f~--------~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (1052)
.. +..+.. .|. ......+++|||||+|.|.. .....|.+.++.-. ..+
T Consensus 205 ~~---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~---------------~~q~~l~~~l~~~~~~~~~ 266 (441)
T PRK10365 205 LL---ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP---------------MMQVRLLRAIQEREVQRVG 266 (441)
T ss_pred HH---HHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH---------------HHHHHHHHHHccCcEEeCC
Confidence 21 111100 000 01123467999999999842 22233334333211 100
Q ss_pred CCccCcCcEEEEEecCCCCCCchhhhcCCCcce-------eeeCCCCCHHHH----HHHHHHHHhh----cc---CCCCH
Q 001560 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAASER----KAILEHEIQR----RS---LECSD 763 (1052)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~-------~i~i~~Pd~~eR----~~IL~~~l~~----~~---~~~sd 763 (1052)
........+.+|++++..- ..+...|+|.. .+.+..|...+| ..+++.++.+ .+ ..+++
T Consensus 267 ~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 343 (441)
T PRK10365 267 SNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP 343 (441)
T ss_pred CCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCH
Confidence 0000112467887776521 11222234421 244555555544 3355555443 12 34788
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 764 EILLDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 764 ~~l~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
+.+..|....-.-+.++|++++++++..
T Consensus 344 ~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 344 QAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 8899988877444788999999887643
No 396
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=1.9e-05 Score=89.83 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=62.7
Q ss_pred CccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC--------eEEEeechh
Q 001560 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------RFISVKGPE 913 (1052)
Q Consensus 842 ~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~--------~~i~v~~s~ 913 (1052)
.|+++.|++.+++.+...+.. -+.+..+||+||+|+|||++|+++|+.+-. .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 478999999999999887752 133345799999999999999999997632 222332210
Q ss_pred hhhhhhcccHHHHHHHHHHH----hcCCCEEEEEeCCCccC
Q 001560 914 LLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 914 l~~~yvGese~~ir~lf~~A----~~~~p~ILfiDEid~l~ 950 (1052)
++.+ +-..+|++.+.+ ..+...|++||++|.+.
T Consensus 70 --~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~ 106 (313)
T PRK05564 70 --KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT 106 (313)
T ss_pred --CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC
Confidence 1111 223477766644 23455699999998883
No 397
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.9e-06 Score=99.46 Aligned_cols=47 Identities=30% Similarity=0.469 Sum_probs=39.1
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
.++.|+.|++..|+.+.-... -..++||+||||||||++|+-+...+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 478999999999999976554 23579999999999999998877655
No 398
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.02 E-value=2.2e-05 Score=76.88 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=45.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCcc--ceeeEEEEecccccC----------------CchhhHHHHhhhhHHHh
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCCSRLSL----------------EKGPIIRQALSNFISEA 651 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~--~~~~v~~v~~s~L~~----------------~~~~~~~~~l~~~f~~a 651 (1052)
.+.++++|++|+|||++++.+++.+..... ....+++++|..... ............+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 366999999999999999999998752100 015666777654321 00011222233333333
Q ss_pred hccCCeEEEEeccchhc
Q 001560 652 LDHAPSIVIFDNLDSII 668 (1052)
Q Consensus 652 ~~~~PsIL~IDEiD~L~ 668 (1052)
..+...+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 33344599999999973
No 399
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.00 E-value=3.5e-06 Score=100.54 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=49.4
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhh-----hccc-------HHHHHHHHHHHhcCCCEEEE
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGAS-------EQAVRDIFSKATAAAPCLLF 942 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~y-----vGes-------e~~ir~lf~~A~~~~p~ILf 942 (1052)
..+++++|++||||+++|++++... +.+|+.++|..+.... +|.. .......|+.|. ..+||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAH---GGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECC---CCEEE
Confidence 4579999999999999999999876 4689999998764321 1110 011122344443 34999
Q ss_pred EeCCCccCC
Q 001560 943 FDEFDSIAP 951 (1052)
Q Consensus 943 iDEid~l~~ 951 (1052)
|||++.|..
T Consensus 239 l~~i~~l~~ 247 (445)
T TIGR02915 239 LDEIGDLPL 247 (445)
T ss_pred EechhhCCH
Confidence 999999954
No 400
>PF13173 AAA_14: AAA domain
Probab=98.00 E-value=1.8e-05 Score=77.74 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=47.8
Q ss_pred CceeEecCCCCchhhHHHHHHHHcC--CeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCcc
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~~--~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l 949 (1052)
.-++++||.|||||++++.+++.+. .+++.+++.+.........+ +.+.|.+.....+.++||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999998876 78888888765432111111 223333322225679999999998
No 401
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.00 E-value=2.2e-05 Score=98.05 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=80.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhccCc-cceeeEEEEecccccCCchhhHHHHhhhhHHH---hhccCCeEEEEec
Q 001560 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFVCCSRLSLEKGPIIRQALSNFISE---ALDHAPSIVIFDN 663 (1052)
Q Consensus 588 ~~p~~vLL~GppGTGKTtLAraLA~~L~~~~-~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~---a~~~~PsIL~IDE 663 (1052)
....+|||+|+||||||.+|+++++...... .....+..++|....... +. .-.++..+ ......++++|||
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~-d~---~tG~~~le~GaLvlAdgGtL~IDE 565 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFN-ES---DNGRAMIQPGAVVLANGGVCCIDE 565 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhc-cc---ccCcccccCCcEEEcCCCeEEecc
Confidence 3445899999999999999999998643211 000122223332221100 00 00001000 1112346999999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---cc-cCCccCcCcEEEEEecCCCC-------------CCchhh
Q 001560 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE-------------KIPQSL 726 (1052)
Q Consensus 664 iD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~V~vIattn~~~-------------~Ld~aL 726 (1052)
+|.+-. .....|.+.|+.-. .+ +....-...+.|||++|+.. .+++.+
T Consensus 566 idkms~---------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~L 630 (915)
T PTZ00111 566 LDKCHN---------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSL 630 (915)
T ss_pred hhhCCH---------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHH
Confidence 999831 23344555565421 11 11111123689999999852 467899
Q ss_pred hcCCCcceee-eCCCCCHHHHHHHHHHHHh
Q 001560 727 TSSGRFDFHV-QLPAPAASERKAILEHEIQ 755 (1052)
Q Consensus 727 ~r~gRF~~~i-~i~~Pd~~eR~~IL~~~l~ 755 (1052)
++ ||+..+ -+..|+.+.=.+|.++.++
T Consensus 631 LS--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 631 FT--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred hh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 99 998665 5567776554555555443
No 402
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.00 E-value=0.00015 Score=78.63 Aligned_cols=133 Identities=21% Similarity=0.293 Sum_probs=77.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccchhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1052)
.+..++||+|||||..++.+|+.++ .+++..+|++.. ....+.+.+..+.. ..+++.+||++.|
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG------~~~~vfnc~~~~--~~~~l~ril~G~~~-----~GaW~cfdefnrl--- 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALG------RFVVVFNCSEQM--DYQSLSRILKGLAQ-----SGAWLCFDEFNRL--- 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--------EEEEETTSSS---HHHHHHHHHHHHH-----HT-EEEEETCCCS---
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhC------CeEEEecccccc--cHHHHHHHHHHHhh-----cCchhhhhhhhhh---
Confidence 4567899999999999999999999 889999998844 33333443333332 3568999999988
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc-------cCcCcEEEEEecCC----CCCCchhhhcCCCcceeeeCC
Q 001560 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS-------CGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQLP 739 (1052)
Q Consensus 671 ~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~-------~~~~~V~vIattn~----~~~Ld~aL~r~gRF~~~i~i~ 739 (1052)
+.+....+.+.+..+.+....+.... .-.....++.|.|. ...+|+.++. .| +.+.+.
T Consensus 97 --------~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~ 165 (231)
T PF12774_consen 97 --------SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMM 165 (231)
T ss_dssp --------SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--
T ss_pred --------hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEe
Confidence 23444455555555555544322110 00113455566663 3578888876 44 478999
Q ss_pred CCCHHHHHHHH
Q 001560 740 APAASERKAIL 750 (1052)
Q Consensus 740 ~Pd~~eR~~IL 750 (1052)
.||.....+++
T Consensus 166 ~PD~~~I~ei~ 176 (231)
T PF12774_consen 166 VPDLSLIAEIL 176 (231)
T ss_dssp S--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99988766554
No 403
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.99 E-value=9.5e-07 Score=104.78 Aligned_cols=127 Identities=24% Similarity=0.341 Sum_probs=91.4
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHc--CCeEEEeechhhhh-----h--------hhcccHHHHHHHHHHHhcCCCEEE
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAAC--SLRFISVKGPELLN-----K--------YIGASEQAVRDIFSKATAAAPCLL 941 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~--~~~~i~v~~s~l~~-----~--------yvGese~~ir~lf~~A~~~~p~IL 941 (1052)
...++|+.|.|||||-.+|+++++.. ..+|+.+||..+-+ . +.|...+-.+..++.|..+ .|
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tl 411 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TL 411 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---cc
Confidence 34679999999999999999999887 56899999965432 1 2223334455666666665 99
Q ss_pred EEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCcccC
Q 001560 942 FFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVLT 1021 (1052)
Q Consensus 942 fiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 1021 (1052)
|+|||..+.- +-+...-|++.+ + -++-++|-.-.=
T Consensus 412 FldeIgd~p~----~~Qs~LLrVl~e---~--------------------------------------~v~p~g~~~~~v 446 (606)
T COG3284 412 FLDEIGDMPL----ALQSRLLRVLQE---G--------------------------------------VVTPLGGTRIKV 446 (606)
T ss_pred HHHHhhhchH----HHHHHHHHHHhh---C--------------------------------------ceeccCCcceeE
Confidence 9999999854 233444455544 1 234445544222
Q ss_pred CeEEEEeCCC------CCCCcceEEEecCCcccccc
Q 001560 1022 GVFVFAATRL------EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 1022 ~v~vi~aTn~------r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
+|.||+||++ +-|||...+||+|..+.|.|
T Consensus 447 dirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~l 482 (606)
T COG3284 447 DIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITL 482 (606)
T ss_pred EEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeecc
Confidence 7999999999 99999999999999988865
No 404
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.99 E-value=1e-05 Score=89.56 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=64.2
Q ss_pred CCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcC--CeEEEeechhhhhhh
Q 001560 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKY 918 (1052)
Q Consensus 841 ~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~--~~~i~v~~s~l~~~y 918 (1052)
..-+.++|+.+.++..--.+.+. ..+....+++|+.||||||||.+|-++|+++| .||+.++++++++.-
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mi--------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E 107 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMI--------KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLE 107 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHH--------HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeec
Confidence 34466889988887654333211 11334567899999999999999999999995 799999999999877
Q ss_pred hcccHHHHHHHHHHHhc
Q 001560 919 IGASEQAVRDIFSKATA 935 (1052)
Q Consensus 919 vGese~~ir~lf~~A~~ 935 (1052)
+..+|. +.+.|++|-.
T Consensus 108 ~kKTE~-L~qa~RraIG 123 (450)
T COG1224 108 VKKTEA-LTQALRRAIG 123 (450)
T ss_pred ccHHHH-HHHHHHHhhc
Confidence 766664 5567777733
No 405
>PRK09183 transposase/IS protein; Provisional
Probab=97.98 E-value=1.1e-05 Score=89.01 Aligned_cols=74 Identities=26% Similarity=0.405 Sum_probs=53.3
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcc-cHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGe-se~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
...+++|+||||||||++|.+++... |..+..+++.++...+... ....+..+|... ...+.+++|||++....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 34679999999999999999997664 7788888888887554322 112344566554 24567999999987644
No 406
>PRK08727 hypothetical protein; Validated
Probab=97.97 E-value=1.5e-05 Score=86.76 Aligned_cols=64 Identities=28% Similarity=0.339 Sum_probs=45.9
Q ss_pred CceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
..++|+||+|||||+++++++..+ |...+.++..++.. .+.++++... ...+|+|||++.+..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQ 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCC
Confidence 349999999999999999997665 55666666655432 2334555443 3359999999998753
No 407
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.96 E-value=8.9e-06 Score=84.75 Aligned_cols=71 Identities=25% Similarity=0.491 Sum_probs=48.7
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhccc-HHHHHHHHHHHhcCCCEEEEEeCCCcc
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGes-e~~ir~lf~~A~~~~p~ILfiDEid~l 949 (1052)
...+++|+||||||||++|.++|+++ |..+..++.++++..+-... .....+.++.... ..+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee
Confidence 34689999999999999999999876 88899999999986543211 1123344444433 349999999755
No 408
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.0001 Score=82.07 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=80.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCcc----------ceeeEEEEecccc-cCCchhhHHHHhhhhHHHhhccCCeE
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD----------LVAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSI 658 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~----------~~~~v~~v~~s~L-~~~~~~~~~~~l~~~f~~a~~~~PsI 658 (1052)
+..+||+||+|+||+++|.++|+.+-+... ....+..+....- ..-..+.++...+.+.........-|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 345999999999999999999999875321 0112333322211 01234444444333333333334469
Q ss_pred EEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeC
Q 001560 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQL 738 (1052)
Q Consensus 659 L~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i 738 (1052)
++||++|.+-. .-.+.|+..+++... ++++|..|+.++.+.+.+++ |.. .+.|
T Consensus 99 ~ii~~ad~mt~---------------~AaNaLLK~LEEPp~---------~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~ 151 (290)
T PRK05917 99 YIIHEADRMTL---------------DAISAFLKVLEDPPQ---------HGVIILTSAKPQRLPPTIRS--RSL-SIHI 151 (290)
T ss_pred EEEechhhcCH---------------HHHHHHHHHhhcCCC---------CeEEEEEeCChhhCcHHHHh--cce-EEEc
Confidence 99999999842 335567777777543 47888888999999999998 655 5677
Q ss_pred CCC
Q 001560 739 PAP 741 (1052)
Q Consensus 739 ~~P 741 (1052)
+++
T Consensus 152 ~~~ 154 (290)
T PRK05917 152 PME 154 (290)
T ss_pred cch
Confidence 664
No 409
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.96 E-value=5.6e-06 Score=99.16 Aligned_cols=71 Identities=25% Similarity=0.381 Sum_probs=49.5
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhh-----hhcccHH-------HHHHHHHHHhcCCCEEEE
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGASEQ-------AVRDIFSKATAAAPCLLF 942 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~-----yvGese~-------~ir~lf~~A~~~~p~ILf 942 (1052)
..++|++|++||||+++|++++... +.+|+.++|..+... .+|.... .-...|+.|.. .+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~---gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANE---GTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCC---CEEE
Confidence 3579999999999999999998875 579999999876322 1221100 01123444433 4999
Q ss_pred EeCCCccCC
Q 001560 943 FDEFDSIAP 951 (1052)
Q Consensus 943 iDEid~l~~ 951 (1052)
|||+|.+.+
T Consensus 243 ld~i~~l~~ 251 (457)
T PRK11361 243 LDEIGEMPL 251 (457)
T ss_pred EechhhCCH
Confidence 999999954
No 410
>PRK12377 putative replication protein; Provisional
Probab=97.95 E-value=3.7e-05 Score=84.16 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=45.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHH--HHhhhhHHHhhccCCeEEEEeccchh
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR--QALSNFISEALDHAPSIVIFDNLDSI 667 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~--~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1052)
.+++|+||||||||+||.++|+++.... ..+.+++..++...-..... ....+.+... ....+|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 5799999999999999999999986432 34566666554421111000 0111222222 46679999999664
No 411
>PRK05642 DNA replication initiation factor; Validated
Probab=97.93 E-value=1.9e-05 Score=85.97 Aligned_cols=64 Identities=27% Similarity=0.417 Sum_probs=47.4
Q ss_pred CceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCCc
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~~ 952 (1052)
.+++|+||+|||||+|++++++++ +..++.++..++...+ ..+.+..+.. .+|+|||++.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~ 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCC
Confidence 568999999999999999998764 6778888888876431 2233333322 48999999988653
No 412
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.92 E-value=9.3e-06 Score=97.62 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=49.4
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhh-----hhcccHH-------HHHHHHHHHhcCCCEEEE
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGASEQ-------AVRDIFSKATAAAPCLLF 942 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~-----yvGese~-------~ir~lf~~A~~~~p~ILf 942 (1052)
...+|++|++|||||++|++++... +.+|+.++|+.+... .+|.... .....|+.|. ...||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~---~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD---GGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECC---CCEEE
Confidence 4569999999999999999999987 579999999876321 1121100 0112244443 34899
Q ss_pred EeCCCccCC
Q 001560 943 FDEFDSIAP 951 (1052)
Q Consensus 943 iDEid~l~~ 951 (1052)
|||+|.+..
T Consensus 238 l~~i~~l~~ 246 (469)
T PRK10923 238 LDEIGDMPL 246 (469)
T ss_pred EeccccCCH
Confidence 999999964
No 413
>PRK06526 transposase; Provisional
Probab=97.92 E-value=1.5e-05 Score=87.74 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=44.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhh-HHHHhhhhHHHhhccCCeEEEEeccchhc
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDSII 668 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~-~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1052)
+.+++|+||||||||+||.+++.++.... ..+.++.+.++....... ....+...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 46799999999999999999999875322 234445444433211100 001112222222 356899999998763
No 414
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.91 E-value=7.5e-05 Score=89.30 Aligned_cols=132 Identities=18% Similarity=0.250 Sum_probs=74.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc---CC----------ch-----h-hHHHHhh----
Q 001560 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS---LE----------KG-----P-IIRQALS---- 645 (1052)
Q Consensus 589 ~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~---~~----------~~-----~-~~~~~l~---- 645 (1052)
.+.+++|+||||+|||++++.++..+..... -..+.+..+. +. .+ . .....+.
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g----~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~ 284 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSN----EEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAI 284 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCC----cEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCce
Confidence 3467999999999999999999987652211 1111111110 00 00 0 0000010
Q ss_pred ---hhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccCcCcEEEEEecCC
Q 001560 646 ---NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQS 718 (1052)
Q Consensus 646 ---~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~ 718 (1052)
..+.. ....+|||||++.+-. .+...|.+.|+.-. ..........++.+|+|+|.
T Consensus 285 ~~pG~l~~---A~gGvLfLDEi~e~~~---------------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP 346 (506)
T PRK09862 285 PGPGEISL---AHNGVLFLDELPEFER---------------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNP 346 (506)
T ss_pred ehhhHhhh---ccCCEEecCCchhCCH---------------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecC
Confidence 11222 2346999999977621 45566666665422 11111112336899999997
Q ss_pred CC---------------------CCchhhhcCCCcceeeeCCCCCHH
Q 001560 719 LE---------------------KIPQSLTSSGRFDFHVQLPAPAAS 744 (1052)
Q Consensus 719 ~~---------------------~Ld~aL~r~gRF~~~i~i~~Pd~~ 744 (1052)
.. .++..++. ||+.++.++.|+.+
T Consensus 347 ~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 347 SPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred ccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 53 35567777 99999999988644
No 415
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.90 E-value=0.00031 Score=83.56 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=26.2
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhccC
Q 001560 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1052)
Q Consensus 587 ~~~p~~vLL~GppGTGKTtLAraLA~~L~~~ 617 (1052)
+.++.-+=|.|.+|||||++++++...+..+
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 4556678899999999999999999987644
No 416
>PRK15115 response regulator GlrR; Provisional
Probab=97.89 E-value=4.5e-06 Score=99.63 Aligned_cols=126 Identities=19% Similarity=0.288 Sum_probs=77.7
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhh-----cccH-------HHHHHHHHHHhcCCCEEEE
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASE-------QAVRDIFSKATAAAPCLLF 942 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yv-----Gese-------~~ir~lf~~A~~~~p~ILf 942 (1052)
...++++|++|||||++|++++... +.+|+.++|..+..... |... .....+|+.|. ..+||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE---GGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECC---CCEEE
Confidence 3569999999999999999999886 57999999986532211 1100 00112344443 34999
Q ss_pred EeCCCccCCcCCCCCcccchhhhhccccccceeeeeeeccCcccCccccchhhhhhhcccccchhHHHhhhhcCCc-ccC
Q 001560 943 FDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVE-VLT 1021 (1052)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~ldg~~-~~~ 1021 (1052)
|||+|.|... ...+++..++++.+ ..+.+-. ...
T Consensus 234 l~~i~~l~~~-------~q~~L~~~l~~~~~--------------------------------------~~~g~~~~~~~ 268 (444)
T PRK15115 234 LDEIGDMPAP-------LQVKLLRVLQERKV--------------------------------------RPLGSNRDIDI 268 (444)
T ss_pred EEccccCCHH-------HHHHHHHHHhhCCE--------------------------------------EeCCCCceeee
Confidence 9999999642 22222222111110 0111111 112
Q ss_pred CeEEEEeCCC------CCCCcceEEEecCCcccccc
Q 001560 1022 GVFVFAATRL------EFFHYNVLLFCSFIIFLILL 1051 (1052)
Q Consensus 1022 ~v~vi~aTn~------r~gRfd~~i~~~~p~~~~~~ 1051 (1052)
++.+|+||++ ..|+|+..+|+.+....|.|
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~l 304 (444)
T PRK15115 269 DVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 (444)
T ss_pred eEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecC
Confidence 6899999998 67899998888877766543
No 417
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.89 E-value=1.9e-05 Score=94.31 Aligned_cols=71 Identities=25% Similarity=0.389 Sum_probs=44.1
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcC----CeEEEeec------h-----h-----h--------hhhhhcccHHHHHH
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACS----LRFISVKG------P-----E-----L--------LNKYIGASEQAVRD 928 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~----~~~i~v~~------s-----~-----l--------~~~yvGese~~ir~ 928 (1052)
...+++|+||||||||++++.++..+. ...+++.. . . + ....+|.....-..
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG 288 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence 346799999999999999999997652 11222111 0 0 0 01123332212235
Q ss_pred HHHHHhcCCCEEEEEeCCCccC
Q 001560 929 IFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 929 lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
.+..|..+ +||+||++.+-
T Consensus 289 ~l~~A~gG---vLfLDEi~e~~ 307 (506)
T PRK09862 289 EISLAHNG---VLFLDELPEFE 307 (506)
T ss_pred HhhhccCC---EEecCCchhCC
Confidence 67788776 99999998873
No 418
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.88 E-value=1.3e-05 Score=97.01 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=57.3
Q ss_pred cccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC-eEEEe---echhhhh---
Q 001560 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-RFISV---KGPELLN--- 916 (1052)
Q Consensus 844 ~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~-~~i~v---~~s~l~~--- 916 (1052)
..+.|.+.+|..+.-.+..... +..-....++...++||+|+||||||++|+++++.+.. .|+.. ++..+..
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 3577888887777544432111 11111123445568999999999999999999998753 33331 2212211
Q ss_pred --hhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 917 --KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 917 --~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
...|+.. .-...+..|.. .+++|||+|.+..
T Consensus 282 ~~~~~g~~~-~~~G~l~~A~~---Gil~iDEi~~l~~ 314 (509)
T smart00350 282 RDPETREFT-LEGGALVLADN---GVCCIDEFDKMDD 314 (509)
T ss_pred EccCcceEE-ecCccEEecCC---CEEEEechhhCCH
Confidence 1111100 00112233433 3999999999954
No 419
>PF14516 AAA_35: AAA-like domain
Probab=97.87 E-value=0.00053 Score=78.65 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=97.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHH---------------------------
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ--------------------------- 642 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~--------------------------- 642 (1052)
+..+.+.||..+|||++...+.+.+.... ..++++++..+.........+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~---~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~ 107 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQG---YRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEI 107 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCC---CEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhc
Confidence 45699999999999999999998886432 567788887654321111111
Q ss_pred ----HhhhhHHHh---hccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEe
Q 001560 643 ----ALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS 715 (1052)
Q Consensus 643 ----~l~~~f~~a---~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIat 715 (1052)
.....|++. ....|-||+|||+|.++.. ......+...|....+... .......+.+|.+
T Consensus 108 ~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------~~~~~dF~~~LR~~~~~~~----~~~~~~~L~li~~ 174 (331)
T PF14516_consen 108 GSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------PQIADDFFGLLRSWYEQRK----NNPIWQKLRLILA 174 (331)
T ss_pred CChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------cchHHHHHHHHHHHHHhcc----cCcccceEEEEEe
Confidence 111112211 1136789999999999731 1112234444444433211 1111122333333
Q ss_pred cCCCCCCchhh-hcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCC
Q 001560 716 AQSLEKIPQSL-TSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1052)
Q Consensus 716 tn~~~~Ld~aL-~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s 777 (1052)
......+.... .++-.+...+.++..+.+|...+++. .+...++..++.+-..+.|..
T Consensus 175 ~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 175 GSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCH
Confidence 32222222222 23334455789999999998777665 456677778999999999954
No 420
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=97.85 E-value=0.00017 Score=96.81 Aligned_cols=333 Identities=16% Similarity=0.230 Sum_probs=166.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHH---hhccCC----eEEEEec
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISE---ALDHAP----SIVIFDN 663 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~---a~~~~P----sIL~IDE 663 (1052)
..++++||+|+|||.++........... +..++.+...+ .......+...++. ..+..| .++|+||
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~-----~~~~~fs~~ts--~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~dd 200 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDRE-----VYLLNFSSVTS--SELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDD 200 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccch-----heEEeeeeecc--HHHHHHHHHHHHHHhcccCCCCCCCceeEEEEec
Confidence 5699999999999999988877654221 11122222111 11111112211111 111222 3899999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCC----CCchhhhcCCCcceeeeCC
Q 001560 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE----KIPQSLTSSGRFDFHVQLP 739 (1052)
Q Consensus 664 iD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~----~Ld~aL~r~gRF~~~i~i~ 739 (1052)
++.... +..+.+. ...+.+++.+....+......+..+-++.++++++.+. .+++.+.| .|. .+.+.
T Consensus 201 inmp~~---~~yg~q~---~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~ 271 (1395)
T KOG3595|consen 201 INMPAL---DKYGDQP---PIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLN 271 (1395)
T ss_pred cCCchh---hhcCCcc---HHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeC
Confidence 987653 2333332 22455555554444444334455566889999999643 45566665 554 67889
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCHHH---HHHHhhhc-------------------CCCCHHHHH---------------
Q 001560 740 APAASERKAILEHEIQRRSLECSDEI---LLDVASKC-------------------DGYDAYDLE--------------- 782 (1052)
Q Consensus 740 ~Pd~~eR~~IL~~~l~~~~~~~sd~~---l~~La~~t-------------------eG~s~~DL~--------------- 782 (1052)
.|+.+....|+..++..... +.+.. ...++..+ .=|+.+|+.
T Consensus 272 ~~~~~sl~~if~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~ 350 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTGHLR-FAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALL 350 (1395)
T ss_pred CCChhhHHHHHHHHHhcccC-ccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhc
Confidence 99999999999988765432 22211 11111111 113444443
Q ss_pred ---HHHHHHHHHHHhhhcccCCcccccccccccccccccccccccccc---cccccccccCCCCCCccccccchhHHHHH
Q 001560 783 ---ILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA---MRDITKTSAEGGRSGWDDVGGLTDIQNAI 856 (1052)
Q Consensus 783 ---~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~---lr~v~~~~~~~~~~~~~~i~g~~~vk~~l 856 (1052)
.+++-+.|.+.+-+...-. .........+.+...+...-+.. ...............|..+...+.....+
T Consensus 351 ~~~~l~~~~~~e~~rv~~drlv---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 427 (1395)
T KOG3595|consen 351 TLEDLIRLWVHEAIRVFADRLV---DDEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSESHKIYEEVLSVELLRGVL 427 (1395)
T ss_pred cHHHHHHHHHHHHHHhhhhhcc---cHHHHHHHHHHHHHHHHHHhhhhhhcCCceeeecccccccccCchHhHHHHHHHH
Confidence 3333334443322111000 00001111111111111000000 00000000000013456666666666555
Q ss_pred HHHhhccc----------------CChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhc
Q 001560 857 KEMIELPS----------------KFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1052)
Q Consensus 857 ~~~i~~~~----------------~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvG 920 (1052)
...+.... .|--...+.-..++++.++.|..|+||.++.+..+..++..++.+......+ ..
T Consensus 428 ~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~--~~ 505 (1395)
T KOG3595|consen 428 EAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRSYN--IE 505 (1395)
T ss_pred HHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeeccccCc--HH
Confidence 44333211 1111111222357889999999999999999999999999998886654322 22
Q ss_pred ccHHHHHHHHHHHhcCCCE-EEEEeC
Q 001560 921 ASEQAVRDIFSKATAAAPC-LLFFDE 945 (1052)
Q Consensus 921 ese~~ir~lf~~A~~~~p~-ILfiDE 945 (1052)
.-...++.+...|...... ++.++|
T Consensus 506 ~~~~dl~~~~r~~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 506 DFREDLKAILRKAGLKNKETVFILTD 531 (1395)
T ss_pred HHHHHHHHHHHHhccCCCceEEeech
Confidence 2345667777777444333 555565
No 421
>PRK09183 transposase/IS protein; Provisional
Probab=97.85 E-value=4e-05 Score=84.75 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchh-hHHHHhhhhHHHhhccCCeEEEEeccchh
Q 001560 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP-IIRQALSNFISEALDHAPSIVIFDNLDSI 667 (1052)
Q Consensus 589 ~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~-~~~~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1052)
.+.+++|+||||||||+|+.+++..+.... ..+.++++.++...... .....+...+... ...+.+++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 346799999999999999999988754221 34556666554422111 1111233344332 246789999999765
No 422
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.85 E-value=9.8e-05 Score=80.63 Aligned_cols=72 Identities=14% Similarity=0.339 Sum_probs=47.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhH---HHHhhhhHHHhhccCCeEEEEeccchh
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII---RQALSNFISEALDHAPSIVIFDNLDSI 667 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~---~~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1052)
.+++|+|+||||||+|+.++|.++.... ..+.+++..++........ .....+++... ...++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 4799999999999999999999986432 4566777666542211110 01112233332 35789999999765
No 423
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.84 E-value=8e-05 Score=79.47 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=54.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCch-----------------------hhHHH
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-----------------------PIIRQ 642 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~-----------------------~~~~~ 642 (1052)
|++.+.-++++||||||||+++..++....... ..++++++..+..... .....
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 567777799999999999999999988764321 4677888765211111 11112
Q ss_pred HhhhhHHHhhccCCeEEEEeccchhcc
Q 001560 643 ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 643 ~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1052)
.+..+...+.++.+.+|+||-+..++.
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 233334445556789999999998864
No 424
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.84 E-value=0.00019 Score=79.63 Aligned_cols=205 Identities=18% Similarity=0.219 Sum_probs=117.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc
Q 001560 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1052)
Q Consensus 552 ~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~ 631 (1052)
.|..+.+.+..+..++.+...+...+ ..+||.|..||||-.+||+....-. ....++..++|..
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlD-------------APLLI~GeTGTGKdLlAkaCH~~S~---R~~~pFlalNCA~ 265 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLD-------------APLLITGETGTGKDLLAKACHLASP---RHSKPFLALNCAS 265 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccC-------------CCeEEecCCCchHHHHHHHHhhcCc---ccCCCeeEeecCC
Confidence 35566667777777777665443322 4599999999999999999876433 2237899999988
Q ss_pred ccCCchhh-H------HHHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCc
Q 001560 632 LSLEKGPI-I------RQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1052)
Q Consensus 632 L~~~~~~~-~------~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1052)
+.....+. + .+--..+|+.| ..+.+|+|||..+. ......++.+|.+- .++.-+...
T Consensus 266 lPe~~aEsElFG~apg~~gk~GffE~A---ngGTVlLDeIgEmS-----------p~lQaKLLRFL~DG--tFRRVGee~ 329 (511)
T COG3283 266 LPEDAAESELFGHAPGDEGKKGFFEQA---NGGTVLLDEIGEMS-----------PRLQAKLLRFLNDG--TFRRVGEDH 329 (511)
T ss_pred CchhHhHHHHhcCCCCCCCccchhhhc---cCCeEEeehhhhcC-----------HHHHHHHHHHhcCC--ceeecCCcc
Confidence 76432211 0 01112234443 33579999996663 23333444444331 111111112
Q ss_pred cCcCcEEEEEecCCCC-------CCchhhhcCCCcceeeeCCCCCHHHHHH----HHHHHHh----hcc---CCCCHHHH
Q 001560 705 CGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASERKA----ILEHEIQ----RRS---LECSDEIL 766 (1052)
Q Consensus 705 ~~~~~V~vIattn~~~-------~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~----IL~~~l~----~~~---~~~sd~~l 766 (1052)
....+|.||++|+..= .+-..|.- |.. ++.+..|...+|.+ +.+.+++ +.+ ..++++.+
T Consensus 330 Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~ 406 (511)
T COG3283 330 EVHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLL 406 (511)
T ss_pred eEEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHH
Confidence 2233689999988531 12222222 333 45666666555542 2333333 222 33677778
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHH
Q 001560 767 LDVASKCDGYDAYDLEILVDRTVHA 791 (1052)
Q Consensus 767 ~~La~~teG~s~~DL~~Lv~~A~~~ 791 (1052)
..+.+...--+-+.|++.+-+|+..
T Consensus 407 ~~L~~y~WpGNVRqL~N~iyRA~s~ 431 (511)
T COG3283 407 TVLTRYAWPGNVRQLKNAIYRALTL 431 (511)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHH
Confidence 8887765444778888888887744
No 425
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.83 E-value=1.4e-05 Score=99.77 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=59.5
Q ss_pred cccccchhHHHHHHHHhhccc-CChhh-------hhcCCcccCCceeEecCCCCchhhHHHHHHHHc-------CCeEEE
Q 001560 844 DDVGGLTDIQNAIKEMIELPS-KFPNI-------FAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFIS 908 (1052)
Q Consensus 844 ~~i~g~~~vk~~l~~~i~~~~-~~~~~-------~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~-------~~~~i~ 908 (1052)
..|.|.+.+|+.+.-.+.... +.... +....++...++||.|+||||||.+|+++++.. |.++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 357788888887754433221 11100 001235667799999999999999999999865 244555
Q ss_pred eechhhhhhhhcc-cHHH--HHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 909 VKGPELLNKYIGA-SEQA--VRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 909 v~~s~l~~~yvGe-se~~--ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
+.+..... +.+. +... -...+..|..+ +++|||+|.+..
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLvlAdgG---tL~IDEidkms~ 571 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVVLANGG---VCCIDELDKCHN 571 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEEEcCCC---eEEecchhhCCH
Confidence 44433221 1110 0000 01223334333 999999999953
No 426
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=2.9e-05 Score=95.10 Aligned_cols=132 Identities=11% Similarity=0.175 Sum_probs=80.5
Q ss_pred CCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCeEEE-eechh---h
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS-VKGPE---L 914 (1052)
Q Consensus 839 ~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~-v~~s~---l 914 (1052)
.+..++++.|.++..+.++..+... ..+..+..-++|+||||||||++++++|+.++..+++ .+... .
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 3468899999998888887776521 1122333458999999999999999999999876544 22110 0
Q ss_pred -------------hhhhhcccHHHHHHHHHHHhc----------CCCEEEEEeCCCccCCcCCCCCcccchhhhh--ccc
Q 001560 915 -------------LNKYIGASEQAVRDIFSKATA----------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN--QVS 969 (1052)
Q Consensus 915 -------------~~~yvGese~~ir~lf~~A~~----------~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~--~~~ 969 (1052)
+..| ......+++++.+|.. ....||||||++.++. |+ +.....++. -.+
T Consensus 151 ~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~-r~---~~~lq~lLr~~~~e 225 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY-RD---TRALHEILRWKYVS 225 (637)
T ss_pred ccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-hh---HHHHHHHHHHHhhc
Confidence 0111 1223445666666642 3456999999999874 22 123333333 223
Q ss_pred cccceeeeeeeccC
Q 001560 970 STSYLFIIYFWEVG 983 (1052)
Q Consensus 970 ~~~~~~i~~~~~~~ 983 (1052)
....-+|++..++.
T Consensus 226 ~~~~pLI~I~TE~~ 239 (637)
T TIGR00602 226 IGRCPLVFIITESL 239 (637)
T ss_pred CCCceEEEEecCCc
Confidence 34455666666653
No 427
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.82 E-value=2.5e-05 Score=88.19 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=52.3
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhccc-HHHHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvGes-e~~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
...|++|+||+|||||+||.|+|+++ |.++..+..++++..+.... .....+.++... ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~ 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc
Confidence 34689999999999999999999988 78888888888875543221 112334444443 34599999998763
No 428
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.82 E-value=3e-05 Score=85.32 Aligned_cols=69 Identities=28% Similarity=0.463 Sum_probs=51.6
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhhhc-----ccHHHHHHHHHHHhcCCCEEEEEeCCCc
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIG-----ASEQAVRDIFSKATAAAPCLLFFDEFDS 948 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~yvG-----ese~~ir~lf~~A~~~~p~ILfiDEid~ 948 (1052)
.+.+++|+||||+|||.||.|+|.++ |..++.+..++++...-. ..+..+ .... ....+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l---~~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKL---LREL--KKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHH---HHHh--hcCCEEEEecccC
Confidence 45789999999999999999999887 789999999999865332 222222 2212 2334999999998
Q ss_pred cC
Q 001560 949 IA 950 (1052)
Q Consensus 949 l~ 950 (1052)
.-
T Consensus 179 ~~ 180 (254)
T COG1484 179 EP 180 (254)
T ss_pred cc
Confidence 74
No 429
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=5.6e-05 Score=86.25 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=46.2
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCC------------------------eEEEeechhhhhhhhcccHHHHHHHHHH
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFSK 932 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~------------------------~~i~v~~s~l~~~yvGese~~ir~lf~~ 932 (1052)
.+..+||+||+|+|||++|+++|+.+.. +++.+...+ -++. -+-..+|++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCC--CCHHHHHHHHHH
Confidence 3456999999999999999999988743 122222110 0000 123567776665
Q ss_pred Hh----cCCCEEEEEeCCCccC
Q 001560 933 AT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 933 A~----~~~p~ILfiDEid~l~ 950 (1052)
+. .+...|++|||+|.+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~ 119 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN 119 (328)
T ss_pred HhhccccCCCeEEEECChhhCC
Confidence 53 3456699999999994
No 430
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.79 E-value=0.0001 Score=84.00 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=46.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhh-HH--HHhhhhHHHhhccCCeEEEEeccchh
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IR--QALSNFISEALDHAPSIVIFDNLDSI 667 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~-~~--~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1052)
.+++|+||+|+|||+|+.++|+++.... ..+.+++..++....... .. ......+... ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 6799999999999999999999986432 467778776654321110 00 0011112222 34579999999665
No 431
>PRK06921 hypothetical protein; Provisional
Probab=97.78 E-value=0.0001 Score=81.78 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=45.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhhhHHHhhccCCeEEEEeccch
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDS 666 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1052)
..+++|+|++|+|||+|+.++|+++..... ..+.++...++...-.... ..+.+.+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g--~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKG--VPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcC--ceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 467999999999999999999999864312 4566666544332111111 111222222 24567999999954
No 432
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=6.4e-05 Score=86.93 Aligned_cols=99 Identities=19% Similarity=0.330 Sum_probs=63.0
Q ss_pred cccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe-----EEEeechhhhhh---
Q 001560 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-----FISVKGPELLNK--- 917 (1052)
Q Consensus 846 i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~-----~i~v~~s~l~~~--- 917 (1052)
+.+.++....+...+.-.+ .-..+.++++||+||||||..++.+++++... ++.+||-.+-+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~---------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPAL---------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHh---------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 5566666666666544211 11234469999999999999999999988433 889998654322
Q ss_pred ------------hhcccH-HHHHHHHHHHhc-CCCEEEEEeCCCccCCcC
Q 001560 918 ------------YIGASE-QAVRDIFSKATA-AAPCLLFFDEFDSIAPKR 953 (1052)
Q Consensus 918 ------------yvGese-~~ir~lf~~A~~-~~p~ILfiDEid~l~~~r 953 (1052)
..|.+. +....+++.... ...-|+++||+|.|..+.
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD 139 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc
Confidence 122222 223333333322 455699999999998643
No 433
>PRK06921 hypothetical protein; Provisional
Probab=97.78 E-value=4.9e-05 Score=84.31 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=47.1
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc----CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCc
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDS 948 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~----~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~ 948 (1052)
..+++|+||||||||+||.++|+++ |..++.+...+++...... -....+.++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4679999999999999999999876 5677788877776543221 11122333333 2345999999954
No 434
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=4.7e-05 Score=90.66 Aligned_cols=71 Identities=21% Similarity=0.393 Sum_probs=52.3
Q ss_pred CceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechhhhhhhhcccHH---HHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ---AVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~l~~~yvGese~---~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
.+++|||++|||||+|++++++.+ +..++.+++.++...+...-.. .+....+.. ....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 469999999999999999999854 5788899999988776543222 222222222 245699999999996
Q ss_pred C
Q 001560 951 P 951 (1052)
Q Consensus 951 ~ 951 (1052)
+
T Consensus 220 ~ 220 (450)
T PRK14087 220 Y 220 (450)
T ss_pred C
Confidence 4
No 435
>PRK06851 hypothetical protein; Provisional
Probab=97.76 E-value=0.00021 Score=82.14 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=28.4
Q ss_pred CceeEecCCCCchhhHHHHHHHHc---CCeEEEeech
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 912 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s 912 (1052)
+-++|.|+||||||++++.++.++ |..+...-|+
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 458999999999999999998877 7777666664
No 436
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=5.3e-05 Score=83.42 Aligned_cols=85 Identities=24% Similarity=0.412 Sum_probs=60.0
Q ss_pred cccchhHHHHHHHHhhcccCChhhhhcCC---cccCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhh-hhhhcc
Q 001560 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAP---LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIGA 921 (1052)
Q Consensus 846 i~g~~~vk~~l~~~i~~~~~~~~~~~~~~---~~~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~-~~yvGe 921 (1052)
|+|+.+.|+.+.-.+.- +|...-..-. --.|+++|+.||+|+|||.+||-+|+..+.||+.+.+..+. -.|+|.
T Consensus 17 IIGQ~~AKkaVAIALRN--R~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGr 94 (444)
T COG1220 17 IIGQDEAKKAVAIALRN--RWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGR 94 (444)
T ss_pred hcCcHHHHHHHHHHHHH--HHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccc
Confidence 78999998877543331 1111100000 12478999999999999999999999999999999998876 368886
Q ss_pred c-HHHHHHHHHH
Q 001560 922 S-EQAVRDIFSK 932 (1052)
Q Consensus 922 s-e~~ir~lf~~ 932 (1052)
. |.-+|++.+.
T Consensus 95 DVesivRDLve~ 106 (444)
T COG1220 95 DVESIIRDLVEI 106 (444)
T ss_pred cHHHHHHHHHHH
Confidence 5 4556666544
No 437
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=5.7e-05 Score=86.48 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=60.3
Q ss_pred Ccccccc-chhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe---------------
Q 001560 842 GWDDVGG-LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1052)
Q Consensus 842 ~~~~i~g-~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~--------------- 905 (1052)
.|+.|.| ++.+.+.++..+.. -+.+..+||+||+|+||+++|+++|+.+-..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4777777 88899988887752 2334557999999999999999999886221
Q ss_pred ---------EEEeechhhhhhhhcc--cHHHHHHHHHHHh----cCCCEEEEEeCCCccC
Q 001560 906 ---------FISVKGPELLNKYIGA--SEQAVRDIFSKAT----AAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 906 ---------~i~v~~s~l~~~yvGe--se~~ir~lf~~A~----~~~p~ILfiDEid~l~ 950 (1052)
+..+.. .|. +-..+|++.+.+. .+...|++|||+|.+.
T Consensus 71 ~~~~~~hpD~~~i~~-------~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~ 123 (329)
T PRK08058 71 RIDSGNHPDVHLVAP-------DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT 123 (329)
T ss_pred HHhcCCCCCEEEecc-------ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC
Confidence 222211 111 1245666665543 2345699999999883
No 438
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.74 E-value=0.00021 Score=87.17 Aligned_cols=164 Identities=13% Similarity=0.135 Sum_probs=93.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHHHhhh---hHHH--hhccCCeEEEEeccc
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSN---FISE--ALDHAPSIVIFDNLD 665 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~~l~~---~f~~--a~~~~PsIL~IDEiD 665 (1052)
+||+|.|++|+|||+++++++..+.........-..+.-..+.|. .+++..+.. .++. .......||||||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg--~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGG--LDLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCC--chHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 689999999999999999999987632111111111222333332 222222211 0100 011124699999998
Q ss_pred hhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccCCccCcCcEEEEEecCCC---CCCchhhhcCCCcceeeeC
Q 001560 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFHVQL 738 (1052)
Q Consensus 666 ~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~V~vIattn~~---~~Ld~aL~r~gRF~~~i~i 738 (1052)
.+-+ .+++.|.+.|+.-.- .+....-..++++|++.+.. ..+++.++. ||+.++.+
T Consensus 104 ~~~~---------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 104 RLEP---------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCCH---------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 7631 567777777765211 11111112368888874432 358888888 99999999
Q ss_pred CCCCHHHH-------HHHHHHHHhhccCCCCHHHHHHHhhhc
Q 001560 739 PAPAASER-------KAILEHEIQRRSLECSDEILLDVASKC 773 (1052)
Q Consensus 739 ~~Pd~~eR-------~~IL~~~l~~~~~~~sd~~l~~La~~t 773 (1052)
..|+..+. .+|.+..-.-.+..+++..+..++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~ 208 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAA 208 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 98876542 233332221124567777776655443
No 439
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.74 E-value=9.2e-05 Score=84.69 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=36.9
Q ss_pred CccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 842 ~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
.+.-+.|++..+..|--... ...-.|+|+.|+.|||||++||+||..+
T Consensus 15 pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LL 62 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLL 62 (423)
T ss_pred chhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhC
Confidence 45677888888887743222 1223689999999999999999999988
No 440
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.73 E-value=1.8e-05 Score=94.23 Aligned_cols=71 Identities=25% Similarity=0.406 Sum_probs=48.9
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhh-----hcccHH-------HHHHHHHHHhcCCCEEEE
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASEQ-------AVRDIFSKATAAAPCLLF 942 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~y-----vGese~-------~ir~lf~~A~~~~p~ILf 942 (1052)
...++++|.+||||+++|++++... +.+|+.++|+.+.... .|.... .....|..| .+++||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA---DGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeEC---CCCEEE
Confidence 4579999999999999999999776 5789999998654221 121100 001123333 345999
Q ss_pred EeCCCccCC
Q 001560 943 FDEFDSIAP 951 (1052)
Q Consensus 943 iDEid~l~~ 951 (1052)
|||++.+.+
T Consensus 239 ldei~~l~~ 247 (441)
T PRK10365 239 LDEIGDISP 247 (441)
T ss_pred EeccccCCH
Confidence 999999964
No 441
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.72 E-value=2.8e-05 Score=80.98 Aligned_cols=72 Identities=25% Similarity=0.414 Sum_probs=43.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhh-HHHHhhhhHHHhhccCCeEEEEeccch
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDS 666 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~-~~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1052)
+.+++|+||+|+|||+||.++++++-... ..+.+++..+|...-... ......+.+... ....+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 46899999999999999999999876422 456777776654211100 001122233332 3457999999953
No 442
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.70 E-value=0.00011 Score=75.30 Aligned_cols=88 Identities=27% Similarity=0.358 Sum_probs=55.4
Q ss_pred cchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC-----------------------
Q 001560 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL----------------------- 904 (1052)
Q Consensus 848 g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~----------------------- 904 (1052)
|++.+.+.|.+.+.. -+.+-.+||+||+|+||+++|+++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 566777777776652 233455899999999999999999987621
Q ss_pred eEEEeechhhhhhhhcccHHHHHHHHHHHhc----CCCEEEEEeCCCccC
Q 001560 905 RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIA 950 (1052)
Q Consensus 905 ~~i~v~~s~l~~~yvGese~~ir~lf~~A~~----~~p~ILfiDEid~l~ 950 (1052)
+++.++..+-. +. -.-..+|++.+.+.. +...|++|||+|.+.
T Consensus 69 d~~~~~~~~~~-~~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~ 115 (162)
T PF13177_consen 69 DFIIIKPDKKK-KS--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT 115 (162)
T ss_dssp TEEEEETTTSS-SS--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-
T ss_pred ceEEEeccccc-ch--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh
Confidence 23333322110 00 123567777766533 356699999999994
No 443
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00011 Score=89.84 Aligned_cols=140 Identities=24% Similarity=0.303 Sum_probs=75.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc--ccCCchhhHHHHh-hhhHHHhh---ccCCeEEEEecc
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR--LSLEKGPIIRQAL-SNFISEAL---DHAPSIVIFDNL 664 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~--L~~~~~~~~~~~l-~~~f~~a~---~~~PsIL~IDEi 664 (1052)
-||||.|.||+|||.|.+.+++.+.. .++++... -.|......+... .+|.-+|- ...++|..|||+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr-------~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf 392 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPR-------GVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF 392 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCc-------eEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec
Confidence 47999999999999999999987652 23333222 1111111111111 11222221 135679999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc---ccC-CccCcCcEEEEEecCCCC-------------CCchhhh
Q 001560 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE---KRK-SSCGIGPIAFVASAQSLE-------------KIPQSLT 727 (1052)
Q Consensus 665 D~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~---~~~-~~~~~~~V~vIattn~~~-------------~Ld~aL~ 727 (1052)
|.+- + .-...+...|+...- +.+ ...-.....++|++|+.. .+++.|+
T Consensus 393 dKm~----~-----------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lL 457 (682)
T COG1241 393 DKMN----E-----------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLL 457 (682)
T ss_pred cCCC----h-----------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHH
Confidence 9872 1 122334455554221 110 000112456888998754 4678899
Q ss_pred cCCCcceeeeC-CCCCHHHHHHHHHHHH
Q 001560 728 SSGRFDFHVQL-PAPAASERKAILEHEI 754 (1052)
Q Consensus 728 r~gRF~~~i~i-~~Pd~~eR~~IL~~~l 754 (1052)
+ ||+..+-+ ..|+.+.=.+|.++.+
T Consensus 458 S--RFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 458 S--RFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred h--hCCeeEEecCCCCccchHHHHHHHH
Confidence 9 99976643 4555544344444333
No 444
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.68 E-value=7.4e-05 Score=85.07 Aligned_cols=85 Identities=15% Similarity=0.188 Sum_probs=59.8
Q ss_pred Ccc-ccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCC-------eEEEeec--
Q 001560 842 GWD-DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISVKG-- 911 (1052)
Q Consensus 842 ~~~-~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~-------~~i~v~~-- 911 (1052)
-|+ ++.|+++.+..+.+.+.... ... -..+..++|+||||||||++|++||+.++. +++.+.+
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a------~g~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA------QGL-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH------hcC-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 345 89999999888887665321 111 123466899999999999999999999966 8999988
Q ss_pred --hhhhhhhhcccHHHHHHHHHHH
Q 001560 912 --PELLNKYIGASEQAVRDIFSKA 933 (1052)
Q Consensus 912 --s~l~~~yvGese~~ir~lf~~A 933 (1052)
+.+.....+--....|+.|...
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHH
Confidence 5555444444445555555443
No 445
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.68 E-value=0.00019 Score=85.48 Aligned_cols=144 Identities=19% Similarity=0.300 Sum_probs=74.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc--ccCCchhhHH-HHhhhhHHHh---hccCCeEEE
Q 001560 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR--LSLEKGPIIR-QALSNFISEA---LDHAPSIVI 660 (1052)
Q Consensus 587 ~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~--L~~~~~~~~~-~~l~~~f~~a---~~~~PsIL~ 660 (1052)
....-+|||+|.||||||-+.+.+++.+..+ .|.+... -.|.....++ ..-+++..+. .....+|-.
T Consensus 459 ~R~~INILL~GDPGtsKSqlLqyv~~l~pRg-------~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCC 531 (804)
T KOG0478|consen 459 FRGDINILLVGDPGTSKSQLLQYCHRLLPRG-------VYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICC 531 (804)
T ss_pred ccccceEEEecCCCcCHHHHHHHHHHhCCcc-------eeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEE
Confidence 3444579999999999999999999987632 1222111 0010000000 0011111111 112456889
Q ss_pred EeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---cccCCccC-cCcEEEEEecCCCC-------------CCc
Q 001560 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EKRKSSCG-IGPIAFVASAQSLE-------------KIP 723 (1052)
Q Consensus 661 IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~---~~~~~~~~-~~~V~vIattn~~~-------------~Ld 723 (1052)
|||+|++-. . -...|.+.|+.-. .+.+-.+. .....|+|++|+.+ .|+
T Consensus 532 IDEFDKM~d-----------S----trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lp 596 (804)
T KOG0478|consen 532 IDEFDKMSD-----------S----TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLP 596 (804)
T ss_pred chhhhhhhH-----------H----HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCC
Confidence 999999831 1 1122333333211 11110000 11467899999643 568
Q ss_pred hhhhcCCCcceee-eCCCCCHHHHHHHHHHHH
Q 001560 724 QSLTSSGRFDFHV-QLPAPAASERKAILEHEI 754 (1052)
Q Consensus 724 ~aL~r~gRF~~~i-~i~~Pd~~eR~~IL~~~l 754 (1052)
+.|++ ||+.++ -+..||...=..|..+..
T Consensus 597 ptLLS--RFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 597 PTLLS--RFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred hhhhh--hhcEEEEEecCcchhHHHHHHHHHH
Confidence 99999 999765 556666653344444433
No 446
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=9.5e-05 Score=83.92 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=42.1
Q ss_pred CccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 842 ~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
.|+++.|++.+++.+...+.. -+.+..+||+||+|+||+++|.++|+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999988863 2344679999999999999999999886
No 447
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.67 E-value=0.0019 Score=75.82 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHH--hcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhc
Q 001560 559 MGTTASDVINRIKV--LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1052)
Q Consensus 559 ~~~~i~~i~~~l~~--ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~ 615 (1052)
...-++++.+.+.. ...+. ...+-+||+||+||||||.++.++++++
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~----------l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPK----------LGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccC----------CCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 44456667666652 22221 1234589999999999999999999998
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.67 E-value=0.00018 Score=72.54 Aligned_cols=74 Identities=28% Similarity=0.409 Sum_probs=46.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCc------------------------hhhHHHHhhhhH
Q 001560 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK------------------------GPIIRQALSNFI 648 (1052)
Q Consensus 593 vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~------------------------~~~~~~~l~~~f 648 (1052)
++|+|+||+|||+++..++..+.... ..+.++++....... ............
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG---GKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAE 78 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHH
Confidence 78999999999999999999875321 345555553321100 011111112223
Q ss_pred HHhhccCCeEEEEeccchhcc
Q 001560 649 SEALDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 649 ~~a~~~~PsIL~IDEiD~L~~ 669 (1052)
..+....|.+++|||+..+..
T Consensus 79 ~~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 79 RLRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHHH
Confidence 444556788999999999874
No 449
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.67 E-value=0.00015 Score=81.91 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=45.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhH-HHHhhhhHHHhhccCCeEEEEeccch
Q 001560 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDS 666 (1052)
Q Consensus 589 ~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~-~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1052)
.+.|++|+||+|+|||+|+.++|+++.... ..+.++...++...-.... ...+.+.+... ....+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG---VSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 346899999999999999999999986332 3455555544432111110 01122233332 3567999999954
No 450
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.67 E-value=7.4e-05 Score=80.55 Aligned_cols=71 Identities=25% Similarity=0.505 Sum_probs=51.0
Q ss_pred CceeEecCCCCchhhHHHHHHHHc-----CCeEEEeechhhhhhhhcccHH-HHHHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~-----~~~~i~v~~s~l~~~yvGese~-~ir~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
..+++|||+|+|||+|.++++++. +..++.+++.++...+...... .+.++.+..+ ...+|+||+++.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 358999999999999999998774 6789999998887766543322 1223333332 345999999999964
No 451
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.66 E-value=7.1e-05 Score=73.25 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=46.7
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc--------CCeEEEeechhhhh----------h----hhc-ccHHH-HHHHHHHH
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC--------SLRFISVKGPELLN----------K----YIG-ASEQA-VRDIFSKA 933 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~--------~~~~i~v~~s~l~~----------~----yvG-ese~~-ir~lf~~A 933 (1052)
.+.++++||||+|||++++.++..+ ..+++.++++...+ . ..+ .+... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999887 67888887754321 0 011 12233 33333444
Q ss_pred hcCCCEEEEEeCCCccC
Q 001560 934 TAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 934 ~~~~p~ILfiDEid~l~ 950 (1052)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 44444599999999985
No 452
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.66 E-value=4.1e-05 Score=94.06 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=47.1
Q ss_pred CceeEecCCCCchhhHHHHHHHHcCC--eEEEeechhhhhhhhcccH--HHH--------HHHHHHHhcCCCEEEEEeCC
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKYIGASE--QAV--------RDIFSKATAAAPCLLFFDEF 946 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~~~--~~i~v~~s~l~~~yvGese--~~i--------r~lf~~A~~~~p~ILfiDEi 946 (1052)
+++||.|+||||||++|++++..+.. +|+.+.....-+..+|.-. ..+ ..++.+|.. .+||+||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~---GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPR---GVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCC---CcEeccch
Confidence 58999999999999999999998854 6888875333333444321 000 112223332 39999999
Q ss_pred CccCC
Q 001560 947 DSIAP 951 (1052)
Q Consensus 947 d~l~~ 951 (1052)
+.+.+
T Consensus 94 ~rl~~ 98 (589)
T TIGR02031 94 NLLDD 98 (589)
T ss_pred hhCCH
Confidence 99954
No 453
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.0013 Score=70.65 Aligned_cols=181 Identities=20% Similarity=0.315 Sum_probs=104.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc-------------CCch---h-hHHHHhhhhHHHhh-
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS-------------LEKG---P-IIRQALSNFISEAL- 652 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~-------------~~~~---~-~~~~~l~~~f~~a~- 652 (1052)
+-+.++|+-|||||++.|++...+..+.. .+++++...+. .... . ..++.-+.+.....
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~---~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQV---AVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCce---EEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 34889999999999999987777653332 23455533322 1100 0 11222222222222
Q ss_pred ccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCC-chhhhc-CC
Q 001560 653 DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI-PQSLTS-SG 730 (1052)
Q Consensus 653 ~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L-d~aL~r-~g 730 (1052)
...|-++++||++.+.. ... .-...|.+..++.... -.++++|-..-...+ .+.+.. ..
T Consensus 129 g~r~v~l~vdEah~L~~-----------~~l-e~Lrll~nl~~~~~~~-------l~ivL~Gqp~L~~~lr~~~l~e~~~ 189 (269)
T COG3267 129 GKRPVVLMVDEAHDLND-----------SAL-EALRLLTNLEEDSSKL-------LSIVLIGQPKLRPRLRLPVLRELEQ 189 (269)
T ss_pred CCCCeEEeehhHhhhCh-----------hHH-HHHHHHHhhcccccCc-------eeeeecCCcccchhhchHHHHhhhh
Confidence 24568999999999852 111 1222232222222211 125555533211111 111111 13
Q ss_pred CcceeeeCCCCCHHHHHHHHHHHHhhccCC---CCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 001560 731 RFDFHVQLPAPAASERKAILEHEIQRRSLE---CSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (1052)
Q Consensus 731 RF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~---~sd~~l~~La~~teG~s~~DL~~Lv~~A~~~a~~ 794 (1052)
|+...|++++.+.++-...++..++..+.. ++++.+..+.....| .|+-+..++..|...+..
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 888669999999999999999988865433 677788889888898 467778888877766654
No 454
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.64 E-value=0.00012 Score=73.83 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=47.9
Q ss_pred eeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhhh----------------------hcc--cHHHHHHHHHHH
Q 001560 881 VLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----------------------IGA--SEQAVRDIFSKA 933 (1052)
Q Consensus 881 iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~y----------------------vGe--se~~ir~lf~~A 933 (1052)
++++||||+|||+++..++... +.+++.++........ .+. .+...+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998776 5666666554332110 011 111122345566
Q ss_pred hcCCCEEEEEeCCCccCCc
Q 001560 934 TAAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 934 ~~~~p~ILfiDEid~l~~~ 952 (1052)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6778889999999998753
No 455
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.62 E-value=3e-05 Score=93.06 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=48.7
Q ss_pred CCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhh-----hhcccHH-------HHHHHHHHHhcCCCEEEE
Q 001560 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGASEQ-------AVRDIFSKATAAAPCLLF 942 (1052)
Q Consensus 878 ~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~-----yvGese~-------~ir~lf~~A~~~~p~ILf 942 (1052)
..++++.|++||||+++|++++... +.+|+.++|..+... .+|.... .....|+.| ..++||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 233 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQA---DGGTLF 233 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEEC---CCCeEE
Confidence 3569999999999999999999876 579999998765322 1221100 011223333 345899
Q ss_pred EeCCCccCC
Q 001560 943 FDEFDSIAP 951 (1052)
Q Consensus 943 iDEid~l~~ 951 (1052)
|||++.+..
T Consensus 234 l~ei~~l~~ 242 (463)
T TIGR01818 234 LDEIGDMPL 242 (463)
T ss_pred EEchhhCCH
Confidence 999999954
No 456
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.59 E-value=8.2e-05 Score=81.78 Aligned_cols=125 Identities=21% Similarity=0.225 Sum_probs=84.7
Q ss_pred CCCCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe------EEEeec
Q 001560 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------FISVKG 911 (1052)
Q Consensus 838 ~~~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~------~i~v~~ 911 (1052)
+++....++++.+++...+.+....+ .-.+.|||||||||||....+.|..+-.+ +.++++
T Consensus 35 yrP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 35 YRPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CCCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 34567788888888888877764321 12289999999999999999999887443 222333
Q ss_pred hhhhhhhhcccHHHHHHHHHHHhc-------CCCEEEEEeCCCccCCcCCCCCcccchhhhhccccccceeeeeeecc
Q 001560 912 PELLNKYIGASEQAVRDIFSKATA-------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQVSSTSYLFIIYFWEV 982 (1052)
Q Consensus 912 s~l~~~yvGese~~ir~lf~~A~~-------~~p~ILfiDEid~l~~~r~~~~~~~~~r~v~~~~~~~~~~i~~~~~~ 982 (1052)
++=.+ ++ ..+.--..|+.++. ..+..+++||+|++.. +.+-+.+|+..++..+..|.+++-+-.
T Consensus 102 Sd~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~----~AQnALRRviek~t~n~rF~ii~n~~~ 172 (360)
T KOG0990|consen 102 SDDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR----DAQNALRRVIEKYTANTRFATISNPPQ 172 (360)
T ss_pred cCccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhhH----HHHHHHHHHHHHhccceEEEEeccChh
Confidence 32111 11 11223356666653 3778999999999975 566678888888888888887776643
No 457
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.55 E-value=5.2e-05 Score=72.19 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=20.5
Q ss_pred eeEecCCCCchhhHHHHHHHHcC
Q 001560 881 VLLYGPPGCGKTHIVGAAAAACS 903 (1052)
Q Consensus 881 iLL~GppGtGKT~lA~alA~~~~ 903 (1052)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999887774
No 458
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.55 E-value=8.8e-05 Score=81.68 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=47.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhHHH-HhhhhHHHhhccCCeEEEEeccchh
Q 001560 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSI 667 (1052)
Q Consensus 589 ~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~~~-~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1052)
.+.+++|+||||+|||+||-|++.++. ..+ ..+.++...++...-...... .....+... -....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 457899999999999999999999987 332 467777776655322111110 111111110 134579999999654
No 459
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0002 Score=81.97 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.7
Q ss_pred ccCCceeEecCCCCchhhHHHHHHHHcC
Q 001560 876 RLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (1052)
Q Consensus 876 ~~~~~iLL~GppGtGKT~lA~alA~~~~ 903 (1052)
+.+..+||+||+|+||+++|+++|+.+.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 5566899999999999999999998873
No 460
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.53 E-value=0.00077 Score=89.76 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=93.6
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccc-
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR- 631 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~- 631 (1052)
+.++.|++..++++...+. .. ....+-+-|+|++|+||||||++++..+..... .. ++++...
T Consensus 183 ~~~~vG~~~~l~~l~~lL~----l~---------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~--g~-vfv~~~~v 246 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLH----LE---------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ--SS-VFIDRAFI 246 (1153)
T ss_pred cccccchHHHHHHHHHHHc----cc---------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC--eE-EEeecccc
Confidence 4457788887777655432 11 223456899999999999999999988764332 11 1222100
Q ss_pred ------ccC----Cc---hhhHHHHhhh-------------hHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHH
Q 001560 632 ------LSL----EK---GPIIRQALSN-------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1052)
Q Consensus 632 ------L~~----~~---~~~~~~~l~~-------------~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~ 685 (1052)
... .. ..-.++.+.+ .+.+....++.+|+|||++.. .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~ 309 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------D 309 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------H
Confidence 000 00 0000111111 112223356678999998643 1
Q ss_pred HHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCCHHHHHHHHHHHHhhccCCCCH--
Q 001560 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD-- 763 (1052)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd-- 763 (1052)
..+.|....+... . +-.||.||.+.+. .+....+..++++.|+.++-.+++..++-+.... .+
T Consensus 310 ~l~~L~~~~~~~~--------~-GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~ 374 (1153)
T PLN03210 310 VLDALAGQTQWFG--------S-GSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGF 374 (1153)
T ss_pred HHHHHHhhCccCC--------C-CcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHH
Confidence 2233332222111 1 1345556664432 2222456678999999999999988765432221 22
Q ss_pred -HHHHHHhhhcCCCC
Q 001560 764 -EILLDVASKCDGYD 777 (1052)
Q Consensus 764 -~~l~~La~~teG~s 777 (1052)
+....+++++.|..
T Consensus 375 ~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 375 MELASEVALRAGNLP 389 (1153)
T ss_pred HHHHHHHHHHhCCCc
Confidence 22445677777743
No 461
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=7.7e-05 Score=86.43 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=36.3
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhc
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1052)
Q Consensus 550 ~~~~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~ 615 (1052)
.++|.++.|.+.++..+.- ... -+.++|++||||||||++|+.+...|.
T Consensus 175 ~~D~~DV~GQ~~AKrAlei--AAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEI--AAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHH--HHh---------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 6788899998877655422 111 125699999999999999998887654
No 462
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.53 E-value=0.0012 Score=81.41 Aligned_cols=218 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccce-----------
Q 001560 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV----------- 621 (1052)
Q Consensus 553 ~~~l~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~----------- 621 (1052)
++++.|.+..++.+...+..- ++++|+||||||||++++++++.+.......
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~-----------------~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~~~ 92 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR-----------------RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPN 92 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC-----------------CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCcch
Q ss_pred --------------------------------------------------------------------------------
Q 001560 622 -------------------------------------------------------------------------------- 621 (1052)
Q Consensus 622 -------------------------------------------------------------------------------- 621 (1052)
T Consensus 93 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl 172 (637)
T PRK13765 93 NPKIRTVPAGKGKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKL 172 (637)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEE
Q ss_pred ---------eeEEEEecccccCCchhhHH-------HHhhhhHHHhhcc-----CCeEEEEeccchhccCCCCCCCCCCc
Q 001560 622 ---------AHIVFVCCSRLSLEKGPIIR-------QALSNFISEALDH-----APSIVIFDNLDSIISSSSDPEGSQPS 680 (1052)
Q Consensus 622 ---------~~v~~v~~s~L~~~~~~~~~-------~~l~~~f~~a~~~-----~PsIL~IDEiD~L~~~~~~~e~~~~~ 680 (1052)
+++++.+|.. .+.-.|.++ ......+...... ..++|||||++.|-+
T Consensus 173 lv~ns~~~~aPvi~~~~p~-~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~----------- 240 (637)
T PRK13765 173 LVNNADKKTAPFVDATGAH-AGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDL----------- 240 (637)
T ss_pred EEeCCCCCCCCEEEeCCCC-HHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCH-----------
Q ss_pred hhHHHHHHHHHHHHHHhc----------------cccCCccCcCcEEEEEecCCC--CCCchhhhcCCCcc---eeeeCC
Q 001560 681 TSVIALTKFLVDIMDEYG----------------EKRKSSCGIGPIAFVASAQSL--EKIPQSLTSSGRFD---FHVQLP 739 (1052)
Q Consensus 681 ~~~~~l~~~L~~~ld~~~----------------~~~~~~~~~~~V~vIattn~~--~~Ld~aL~r~gRF~---~~i~i~ 739 (1052)
.....|.+.++.-. ...-.. .+.+|++++.. ..+++.|.. ||. ..+++.
T Consensus 241 ----~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~----dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~ 310 (637)
T PRK13765 241 ----ESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPC----DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMR 310 (637)
T ss_pred ----HHHHHHHHHHHhCCEEecccccccccccCCCcceee----eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcc
Q ss_pred ---CCCHHHHHHHHHHHHhhccC-----CCCHHHHHHHhhhc------CC---CCHHHHHHHHHHHHHHHHhhhcccCCc
Q 001560 740 ---APAASERKAILEHEIQRRSL-----ECSDEILLDVASKC------DG---YDAYDLEILVDRTVHAAVGRYLHSDSS 802 (1052)
Q Consensus 740 ---~Pd~~eR~~IL~~~l~~~~~-----~~sd~~l~~La~~t------eG---~s~~DL~~Lv~~A~~~a~~r~~~~~~~ 802 (1052)
.-+.+.+..+++.+.+.... .++.+.+..+.+.. .+ ...++|..+++.|...|...
T Consensus 311 ~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~------- 383 (637)
T PRK13765 311 DTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSE------- 383 (637)
T ss_pred cccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhh-------
Q ss_pred cccccccccccccccccc
Q 001560 803 FEKHIKPTLVRDDFSQAM 820 (1052)
Q Consensus 803 ~~~~~~~~lt~eDf~~Al 820 (1052)
....++.+|..+|.
T Consensus 384 ----~~~~i~~~~v~~a~ 397 (637)
T PRK13765 384 ----GAELTTAEHVLEAK 397 (637)
T ss_pred ----ccceecHHHHHHHH
No 463
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.48 E-value=0.0013 Score=72.10 Aligned_cols=119 Identities=22% Similarity=0.237 Sum_probs=68.5
Q ss_pred ccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeE-EEEeccccc-C
Q 001560 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI-VFVCCSRLS-L 634 (1052)
Q Consensus 557 ~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v-~~v~~s~L~-~ 634 (1052)
-|..-+.+-|.+.|+..+.... -..|--+=|+|++||||..+++.+|+.+.........+ .++....+. .
T Consensus 85 fGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 85 FGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 3455566777777754433221 12234467899999999999999999886432211111 122222333 2
Q ss_pred CchhhHHHHhhhhHH-HhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 001560 635 EKGPIIRQALSNFIS-EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1052)
Q Consensus 635 ~~~~~~~~~l~~~f~-~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~ 698 (1052)
+..+.-+..+++++. .+...+.+++++||.|++-+ .+++.|.-.+|.+.
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~---------------gLld~lkpfLdyyp 206 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP---------------GLLDVLKPFLDYYP 206 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH---------------hHHHHHhhhhcccc
Confidence 222333333433333 34456778999999999842 45666666666543
No 464
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0041 Score=70.08 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=92.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCc------c-ceeeEEEEecccccCCchhhHHHHhhhhHHHhhc-cCCeEEEEe
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK------D-LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-HAPSIVIFD 662 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~------~-~~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~~-~~PsIL~ID 662 (1052)
...||+|+.|.||+++++.+++.+.+.. . ....+..++... ..-...+++..++.+-..+.. ...-|++||
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~ 97 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-KDLSKSEFLSAINKLYFSSFVQSQKKILIIK 97 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-CcCCHHHHHHHHHHhccCCcccCCceEEEEe
Confidence 4488999999999999999999984321 0 001233333111 112233444433333222211 355699999
Q ss_pred ccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCCCC
Q 001560 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPA 742 (1052)
Q Consensus 663 EiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~Pd 742 (1052)
++|.+-. .-.+.|+..+++... .+++|.+++.++.+-+.+++ |.. .+++++++
T Consensus 98 ~~e~m~~---------------~a~NaLLK~LEEPp~---------~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~ 150 (299)
T PRK07132 98 NIEKTSN---------------SLLNALLKTIEEPPK---------DTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPD 150 (299)
T ss_pred cccccCH---------------HHHHHHHHHhhCCCC---------CeEEEEEeCChHhChHHHHh--CeE-EEECCCCC
Confidence 9988731 234566677776543 36666667677888888888 544 78999999
Q ss_pred HHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCC
Q 001560 743 ASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1052)
Q Consensus 743 ~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG 775 (1052)
.++..+.|.. .+ .+++....+|..+.|
T Consensus 151 ~~~l~~~l~~----~~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 151 QQKILAKLLS----KN--KEKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHHHHHHH----cC--CChhHHHHHHHHcCC
Confidence 9887766653 22 445555555555554
No 465
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.43 E-value=0.00085 Score=80.29 Aligned_cols=195 Identities=18% Similarity=0.295 Sum_probs=114.0
Q ss_pred ccchhHHHHHHHHHHHhcCCCccccccccCCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCC-
Q 001560 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE- 635 (1052)
Q Consensus 557 ~G~~~~i~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~- 635 (1052)
++.+.......+++..+.... .++|++|.+||||-.++|++.+... ...+++.++|..+...
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~-------------~pvll~GEtGtGKe~laraiH~~s~----~~gpfvAvNCaAip~~l 378 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATD-------------LPVLLQGETGTGKEVLARAIHQNSE----AAGPFVAVNCAAIPEAL 378 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcC-------------CCeEecCCcchhHHHHHHHHHhccc----ccCCeEEEEeccchHHh
Confidence 467778888888886664433 5599999999999999999998654 2367899999765422
Q ss_pred --------chhhHH----HHhhhhHHHhhccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-ccC
Q 001560 636 --------KGPIIR----QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-KRK 702 (1052)
Q Consensus 636 --------~~~~~~----~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~-~~~ 702 (1052)
..+... +-.+..++.| ....||+|||..+. . .+...|++.+.+-.- .-.
T Consensus 379 iesELFGy~~GafTga~~kG~~g~~~~A---~gGtlFldeIgd~p-----------~----~~Qs~LLrVl~e~~v~p~g 440 (606)
T COG3284 379 IESELFGYVAGAFTGARRKGYKGKLEQA---DGGTLFLDEIGDMP-----------L----ALQSRLLRVLQEGVVTPLG 440 (606)
T ss_pred hhHHHhccCccccccchhccccccceec---CCCccHHHHhhhch-----------H----HHHHHHHHHHhhCceeccC
Confidence 111111 1111122222 23589999997762 1 333444444443210 000
Q ss_pred CccCcCcEEEEEecCCCCCCchhhhcCCCcce-------eeeCCCCCHHH---HHHHHHHHHhh---ccCCCCHHHHHHH
Q 001560 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAASE---RKAILEHEIQR---RSLECSDEILLDV 769 (1052)
Q Consensus 703 ~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~-------~i~i~~Pd~~e---R~~IL~~~l~~---~~~~~sd~~l~~L 769 (1052)
.......|.||++|+..= ..|.+.|+|.. .+.+..|...+ +...|.+++.+ ....++++.+..|
T Consensus 441 ~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l 517 (606)
T COG3284 441 GTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARL 517 (606)
T ss_pred CcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHH
Confidence 011223688999887532 23444455542 12344444444 44455555544 3466888887766
Q ss_pred hhh-cCCCCHHHHHHHHHHHHH
Q 001560 770 ASK-CDGYDAYDLEILVDRTVH 790 (1052)
Q Consensus 770 a~~-teG~s~~DL~~Lv~~A~~ 790 (1052)
..+ .+| +-++|.++++.++.
T Consensus 518 ~~~~WPG-Nirel~~v~~~~~~ 538 (606)
T COG3284 518 LAYRWPG-NIRELDNVIERLAA 538 (606)
T ss_pred HhCCCCC-cHHHHHHHHHHHHH
Confidence 554 455 77889998888763
No 466
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.42 E-value=0.0003 Score=75.53 Aligned_cols=23 Identities=48% Similarity=0.694 Sum_probs=20.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAK 612 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~ 612 (1052)
|..+||||+||+||||+|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 35599999999999999999863
No 467
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0014 Score=71.62 Aligned_cols=125 Identities=10% Similarity=0.070 Sum_probs=78.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhccCccce----------------eeEEEEecccccCCchhhHHHHhhhhHHHhh
Q 001560 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV----------------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL 652 (1052)
Q Consensus 589 ~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~----------------~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a~ 652 (1052)
+|..+||+||+|+||..+|.++|+.+-+..... ..+.++.... ..-..++++...+.+...+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCHHHHHHHHHHHccCch
Confidence 345699999999999999999999886432110 1122221111 11223444443333322221
Q ss_pred c-cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCC
Q 001560 653 D-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1052)
Q Consensus 653 ~-~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gR 731 (1052)
. ...-|++||++|.+-. .-.+.|+..+++... .+++|.+|+.++.+.+.+++ |
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LEEPp~---------~t~fiLit~~~~~lLpTI~S--R 138 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIEEPPK---------NTYGIFTTRNENNILNTILS--R 138 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhcCCCC---------CeEEEEEECChHhCchHhhh--h
Confidence 2 2356999999999841 345566666776443 47888999999999999999 6
Q ss_pred cceeeeCCCC
Q 001560 732 FDFHVQLPAP 741 (1052)
Q Consensus 732 F~~~i~i~~P 741 (1052)
.. .+.++.+
T Consensus 139 Cq-~~~~~~~ 147 (261)
T PRK05818 139 CV-QYVVLSK 147 (261)
T ss_pred ee-eeecCCh
Confidence 54 4666666
No 468
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.40 E-value=0.00074 Score=72.97 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=33.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s 630 (1052)
|++.+.-++++|+||+|||+++..+|....... ..++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~---~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNG---KKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEECC
Confidence 456666799999999999999999998764332 567788877
No 469
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0027 Score=70.96 Aligned_cols=131 Identities=17% Similarity=0.213 Sum_probs=81.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhccCccc------------------eeeEEEEecccccCCchhhHHHHhhhhHHHh
Q 001560 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA 651 (1052)
Q Consensus 590 p~~vLL~GppGTGKTtLAraLA~~L~~~~~~------------------~~~v~~v~~s~L~~~~~~~~~~~l~~~f~~a 651 (1052)
+..+||+|| .||+++|+.+|+.+.+.... ...+..+.... ..-..+.++...+.+....
T Consensus 24 ~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 24 NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-QVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC-CcCCHHHHHHHHHHHhhCc
Confidence 455999996 68999999999988653210 01122332221 0112344454444433333
Q ss_pred hccCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCC
Q 001560 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1052)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gR 731 (1052)
......|++||++|.+-. .-.+.|+..+++... ++++|.+|++++.+.|.+++ |
T Consensus 101 ~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEEPp~---------~t~~iL~t~~~~~lLpTI~S--R 154 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV---------------NAANSLLKVIEEPQS---------EIYIFLLTNDENKVLPTIKS--R 154 (290)
T ss_pred ccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChhhCchHHHH--c
Confidence 334456999999999841 234566666676443 47888888889999999999 7
Q ss_pred cceeeeCCCCCHHHHHHHHH
Q 001560 732 FDFHVQLPAPAASERKAILE 751 (1052)
Q Consensus 732 F~~~i~i~~Pd~~eR~~IL~ 751 (1052)
.. .+.|+. +.++..+++.
T Consensus 155 cq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 155 TQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ce-eeeCCC-cHHHHHHHHH
Confidence 65 678865 5555555554
No 470
>PRK06620 hypothetical protein; Validated
Probab=97.38 E-value=0.00017 Score=77.55 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.7
Q ss_pred CceeEecCCCCchhhHHHHHHHHcCCeE
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAACSLRF 906 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~~~~~ 906 (1052)
..++||||||||||++++++++..+..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~ 72 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI 72 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE
Confidence 5699999999999999999999887544
No 471
>PRK09087 hypothetical protein; Validated
Probab=97.37 E-value=0.00023 Score=77.16 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=37.7
Q ss_pred CceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCcc
Q 001560 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1052)
Q Consensus 879 ~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l 949 (1052)
..++|+||+|||||++++++++..+..++.. .++.. +++..... .+|+|||++.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~ 99 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAG 99 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCC
Confidence 3489999999999999999998876654433 22221 22222222 28899999977
No 472
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.37 E-value=0.00035 Score=74.57 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=52.2
Q ss_pred CCcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhh-h---h----hh---------------cccHHHH
Q 001560 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL-N---K----YI---------------GASEQAV 926 (1052)
Q Consensus 873 ~~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~-~---~----yv---------------Gese~~i 926 (1052)
-|+....-++++||||||||+++..++... +.+.+.++..++. . . +. .+....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 367777789999999999999998777543 6677777765411 0 0 00 0111224
Q ss_pred HHHHHHHhcCCCEEEEEeCCCccCC
Q 001560 927 RDIFSKATAAAPCLLFFDEFDSIAP 951 (1052)
Q Consensus 927 r~lf~~A~~~~p~ILfiDEid~l~~ 951 (1052)
..+.+.+....+++|+||-+.++..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 4444555555788999999998863
No 473
>PRK04132 replication factor C small subunit; Provisional
Probab=97.36 E-value=0.00054 Score=86.25 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=50.7
Q ss_pred CCceeEec--CCCCchhhHHHHHHHHc-----CCeEEEeechhhhhhhhcccHHHHHHHHHHHhcC------CCEEEEEe
Q 001560 878 RSNVLLYG--PPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAA------APCLLFFD 944 (1052)
Q Consensus 878 ~~~iLL~G--ppGtGKT~lA~alA~~~-----~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~------~p~ILfiD 944 (1052)
+-+-+..| |++.||||+|+++|+++ +.+++++|+++..+ -..+|++...+... ...|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 34567778 99999999999999997 56899999997432 23566666554321 23699999
Q ss_pred CCCccC
Q 001560 945 EFDSIA 950 (1052)
Q Consensus 945 Eid~l~ 950 (1052)
|+|.+.
T Consensus 638 EaD~Lt 643 (846)
T PRK04132 638 EADALT 643 (846)
T ss_pred CcccCC
Confidence 999994
No 474
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.35 E-value=0.00085 Score=75.96 Aligned_cols=81 Identities=23% Similarity=0.257 Sum_probs=52.4
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc----------------CCchhhHHHHhhhhHH
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS----------------LEKGPIIRQALSNFIS 649 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~----------------~~~~~~~~~~l~~~f~ 649 (1052)
|++.++-++|+||||||||+|+..++....... ..+.++++.... -......++.+..+..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g---~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAG---GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 577777899999999999999888777664332 445666654311 1111122333333333
Q ss_pred HhhccCCeEEEEeccchhcc
Q 001560 650 EALDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 650 ~a~~~~PsIL~IDEiD~L~~ 669 (1052)
......+.+++||-+..+.+
T Consensus 128 li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred HhhccCCcEEEEcchhhhcc
Confidence 34456789999999999875
No 475
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.35 E-value=0.00028 Score=86.98 Aligned_cols=85 Identities=25% Similarity=0.282 Sum_probs=66.1
Q ss_pred CCCccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHcCCe----EEE-eec---
Q 001560 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----FIS-VKG--- 911 (1052)
Q Consensus 840 ~~~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~~~~----~i~-v~~--- 911 (1052)
...++++.|.+++++.++..+.. +.+++|+||||||||++|+++|+.++.. ++. .+.
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~ 78 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDP 78 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCC
Confidence 35788999999999988876652 2389999999999999999999999654 122 222
Q ss_pred -hh-hhhhhhcccHHHHHHHHHHHhcCCCE
Q 001560 912 -PE-LLNKYIGASEQAVRDIFSKATAAAPC 939 (1052)
Q Consensus 912 -s~-l~~~yvGese~~ir~lf~~A~~~~p~ 939 (1052)
.+ +..-+.|..++.++..|..|++.+|+
T Consensus 79 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 108 (608)
T TIGR00764 79 NMPRIVEVPAGEGREIVEDYKKKAFKQPSS 108 (608)
T ss_pred chHHHHHHHHhhchHHHHHHHHHhhcccch
Confidence 12 23456788999999999999888776
No 476
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.35 E-value=0.00029 Score=76.45 Aligned_cols=67 Identities=27% Similarity=0.384 Sum_probs=52.6
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHHhcCCCEEEEEeCCCccC
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A~~~~p~ILfiDEid~l~ 950 (1052)
...+..++||+|||||..++.+|+.+|..++..+|++-++ .+.+.++|.-+-. ..+++.|||++.+-
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRLS 97 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSS
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhhh
Confidence 3456789999999999999999999999999999987553 4567788876643 35799999999994
No 477
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0011 Score=75.42 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=44.9
Q ss_pred cCCceeEecCCCCchhhHHHHHHHHcCCe------------------------EEEeechhhhhhhhcccHHHHHHHHHH
Q 001560 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLR------------------------FISVKGPELLNKYIGASEQAVRDIFSK 932 (1052)
Q Consensus 877 ~~~~iLL~GppGtGKT~lA~alA~~~~~~------------------------~i~v~~s~l~~~yvGese~~ir~lf~~ 932 (1052)
.+-.+||+||+|+||+++|+++|+.+-.. ++.+...+ ++.+ .-..+|++-+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHH
Confidence 34568999999999999999999887221 22221100 1111 23456666555
Q ss_pred H----hcCCCEEEEEeCCCccC
Q 001560 933 A----TAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 933 A----~~~~p~ILfiDEid~l~ 950 (1052)
+ ..+...|++||++|.+.
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~ 120 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT 120 (325)
T ss_pred HhhccccCCceEEEEechhhhC
Confidence 4 33455699999999994
No 478
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.31 E-value=0.0014 Score=74.25 Aligned_cols=81 Identities=22% Similarity=0.250 Sum_probs=51.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccc----------------cCCchhhHHHHhhhhHH
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL----------------SLEKGPIIRQALSNFIS 649 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L----------------~~~~~~~~~~~l~~~f~ 649 (1052)
|+|.++-+.++||||||||+|+..++....... ..+.++++..- .-......++.+..+-.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g---~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLG---GTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 567777799999999999999999887664322 35666766331 11111112222322222
Q ss_pred HhhccCCeEEEEeccchhcc
Q 001560 650 EALDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 650 ~a~~~~PsIL~IDEiD~L~~ 669 (1052)
......+.+++||-+-.+++
T Consensus 128 li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 128 LVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred HHhccCCCEEEEcchHhhcc
Confidence 33456789999999999885
No 479
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.31 E-value=0.0018 Score=75.21 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=52.7
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCch----------hh----HHHHhhhhHHHh
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG----------PI----IRQALSNFISEA 651 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~----------~~----~~~~l~~~f~~a 651 (1052)
|++++.-++|+|+||+|||+++..+|..+.... ..+.|++..+-..... .. ....+..+++..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 466667799999999999999999998775432 3566666543111000 00 011233444555
Q ss_pred hccCCeEEEEeccchhcc
Q 001560 652 LDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~ 669 (1052)
....|.+|+||++..++.
T Consensus 155 ~~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 155 EELKPDLVIIDSIQTVYS 172 (372)
T ss_pred HhcCCcEEEEcchHHhhc
Confidence 567899999999998863
No 480
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.0045 Score=62.24 Aligned_cols=27 Identities=41% Similarity=0.658 Sum_probs=24.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccC
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~ 617 (1052)
-.+.++|+||+||||++.-++..|...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 459999999999999999999988744
No 481
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.27 E-value=0.00022 Score=81.67 Aligned_cols=145 Identities=25% Similarity=0.291 Sum_probs=71.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc--CCchhhHHH-HhhhhHHH---hhccCCeEEEE
Q 001560 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS--LEKGPIIRQ-ALSNFISE---ALDHAPSIVIF 661 (1052)
Q Consensus 588 ~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~--~~~~~~~~~-~l~~~f~~---a~~~~PsIL~I 661 (1052)
...-|+||.|.||+|||.|.+.+++... ..++++..... +-.....+. .-.++.-+ ......+|++|
T Consensus 55 r~~ihiLlvGdpg~gKS~ll~~~~~~~p-------r~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccI 127 (331)
T PF00493_consen 55 RGNIHILLVGDPGTGKSQLLKYVAKLAP-------RSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCI 127 (331)
T ss_dssp --S--EEEECSCHHCHHHHHHCCCCT-S-------SEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEE
T ss_pred ccccceeeccchhhhHHHHHHHHHhhCC-------ceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeee
Confidence 3445899999999999999998876543 22333332211 100000000 00011100 01134579999
Q ss_pred eccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc---ccC-CccCcCcEEEEEecCCCC-------------CCch
Q 001560 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE---KRK-SSCGIGPIAFVASAQSLE-------------KIPQ 724 (1052)
Q Consensus 662 DEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~---~~~-~~~~~~~V~vIattn~~~-------------~Ld~ 724 (1052)
||+|.+-. .....|.+.|+.-.- +.+ ...-.....|+|++|+.. .+++
T Consensus 128 De~dk~~~---------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~ 192 (331)
T PF00493_consen 128 DEFDKMKE---------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPP 192 (331)
T ss_dssp CTTTT--C---------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-C
T ss_pred cccccccc---------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccch
Confidence 99999831 234556666765221 110 011112567999999765 4677
Q ss_pred hhhcCCCcceeeeC-CCCCHHHHHHHHHHHHhh
Q 001560 725 SLTSSGRFDFHVQL-PAPAASERKAILEHEIQR 756 (1052)
Q Consensus 725 aL~r~gRF~~~i~i-~~Pd~~eR~~IL~~~l~~ 756 (1052)
.|++ ||+..+.+ ..|+.+.-..|.++.+..
T Consensus 193 ~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 193 PLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp CCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhHh--hcCEEEEeccccccccccccceEEEec
Confidence 8888 99987765 566666556666666554
No 482
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.27 E-value=0.00046 Score=86.99 Aligned_cols=159 Identities=18% Similarity=0.269 Sum_probs=101.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhH-------HHHhhhhH---HHh--hccCCeEEE
Q 001560 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-------RQALSNFI---SEA--LDHAPSIVI 660 (1052)
Q Consensus 593 vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~-------~~~l~~~f---~~a--~~~~PsIL~ 660 (1052)
++++||||.|||+.+.++|+.++ ..++..|.+...+.....- ...+...+ ... ......||+
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g------~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil 433 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELG------FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL 433 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcc------cceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence 69999999999999999999998 6778888876654332110 01111112 111 011123999
Q ss_pred EeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCCchhhhcCCCcceeeeCCC
Q 001560 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA 740 (1052)
Q Consensus 661 IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~r~gRF~~~i~i~~ 740 (1052)
+||+|.++. .+. .....+..+.... .+-+|.+||........... +.+..++|+.
T Consensus 434 ~devD~~~~--~dR----------g~v~~l~~l~~ks-----------~~Piv~~cndr~~p~sr~~~--~~~~~l~f~k 488 (871)
T KOG1968|consen 434 MDEVDGMFG--EDR----------GGVSKLSSLCKKS-----------SRPLVCTCNDRNLPKSRALS--RACSDLRFSK 488 (871)
T ss_pred Eeccccccc--hhh----------hhHHHHHHHHHhc-----------cCCeEEEecCCCCccccchh--hhcceeeecC
Confidence 999999873 111 1223333333311 14577788876654432223 4445689999
Q ss_pred CCHHHHHHHHHHHHhhccCCCCHHHHHHHhhhcCCCCHHHHHHHHH
Q 001560 741 PAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1052)
Q Consensus 741 Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~ 786 (1052)
|+.+++..-+..++...++.+++..++.+...+ +.||+..+.
T Consensus 489 P~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~ 530 (871)
T KOG1968|consen 489 PSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIM 530 (871)
T ss_pred CcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHH
Confidence 999998888888888778889999999998887 446655443
No 483
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.27 E-value=0.0005 Score=65.45 Aligned_cols=24 Identities=58% Similarity=0.886 Sum_probs=21.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhcc
Q 001560 593 ILIHGPPGSGKTSLAKAVAKSLEH 616 (1052)
Q Consensus 593 vLL~GppGTGKTtLAraLA~~L~~ 616 (1052)
|.|+|+||+|||++|+.||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999998873
No 484
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.26 E-value=0.0022 Score=76.52 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=52.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccCCchhhH--------------HHHhhhhHHHh
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII--------------RQALSNFISEA 651 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~~~~~~~--------------~~~l~~~f~~a 651 (1052)
|++++.-++|+|+||+|||+++..+|..+.... ..+.|++..+....-.... +..+.++++..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g---~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAG---GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 466667799999999999999999998775221 3566776543211000000 01233444555
Q ss_pred hccCCeEEEEeccchhcc
Q 001560 652 LDHAPSIVIFDNLDSIIS 669 (1052)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~ 669 (1052)
....|.+++||++..+..
T Consensus 153 ~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 153 EEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred HhhCCCEEEEechhhhcc
Confidence 556899999999998864
No 485
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.26 E-value=0.00071 Score=76.61 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=52.6
Q ss_pred CcccCCceeEecCCCCchhhHHHHHHHHc---CCeEEEeechhhhhh----------------hhcccHHHHHHHHHHHh
Q 001560 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK----------------YIGASEQAVRDIFSKAT 934 (1052)
Q Consensus 874 ~~~~~~~iLL~GppGtGKT~lA~alA~~~---~~~~i~v~~s~l~~~----------------yvGese~~ir~lf~~A~ 934 (1052)
|++..+-++++||||||||+||-.++... |..++.++..+..+. .....++.+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777789999999999999986555433 666776665432210 11122344444444456
Q ss_pred cCCCEEEEEeCCCccCCc
Q 001560 935 AAAPCLLFFDEFDSIAPK 952 (1052)
Q Consensus 935 ~~~p~ILfiDEid~l~~~ 952 (1052)
...+++++||-+.++.++
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 678889999999999864
No 486
>PHA00729 NTP-binding motif containing protein
Probab=97.24 E-value=0.00043 Score=74.19 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.5
Q ss_pred ceeEecCCCCchhhHHHHHHHHcC
Q 001560 880 NVLLYGPPGCGKTHIVGAAAAACS 903 (1052)
Q Consensus 880 ~iLL~GppGtGKT~lA~alA~~~~ 903 (1052)
+++++|+||||||++|.++|..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 487
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.24 E-value=0.0036 Score=73.43 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=25.6
Q ss_pred CCcccCCceeEecCCCCchhhHHHHHHHHc
Q 001560 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1052)
Q Consensus 873 ~~~~~~~~iLL~GppGtGKT~lA~alA~~~ 902 (1052)
.|+.+...+-+.||.||||+|+.+.+-..+
T Consensus 411 fgid~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 411 FGIDLDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred cccCcccceeEecCCCCchhhhHHHHhhcc
Confidence 467777889999999999999998887665
No 488
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.17 E-value=0.00046 Score=79.70 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=27.0
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhcc
Q 001560 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1052)
Q Consensus 587 ~~~p~~vLL~GppGTGKTtLAraLA~~L~~ 616 (1052)
.++|+|+.|+|++|+|||+|+-++...+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 567899999999999999999999988764
No 489
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.17 E-value=0.00031 Score=67.82 Aligned_cols=31 Identities=29% Similarity=0.615 Sum_probs=28.0
Q ss_pred eeEecCCCCchhhHHHHHHHHcCCeEEEeec
Q 001560 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKG 911 (1052)
Q Consensus 881 iLL~GppGtGKT~lA~alA~~~~~~~i~v~~ 911 (1052)
+++.||||+||||+|+.||+.+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988876654
No 490
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.16 E-value=0.0006 Score=73.76 Aligned_cols=83 Identities=25% Similarity=0.335 Sum_probs=58.7
Q ss_pred CccccccchhHHHHHHHHhhcccCChhhhhcCCcccCCceeEecCCCCchhhHHHHHHHHc--CCeEEEeechhhhhhhh
Q 001560 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC--SLRFISVKGPELLNKYI 919 (1052)
Q Consensus 842 ~~~~i~g~~~vk~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lA~alA~~~--~~~~i~v~~s~l~~~yv 919 (1052)
.-..++|+...++..--.+.+. +. ..-..+.+||.||||||||.+|-++++++ +.||....++++++.-+
T Consensus 36 ~~~g~vGQ~~AReAagiivdli-k~-------KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~Ev 107 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLI-KS-------KKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEV 107 (456)
T ss_pred cccccccchhhhhhhhHHHHHH-Hh-------hhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhh
Confidence 3456788888877643333211 11 11234579999999999999999999999 57899999999988766
Q ss_pred cccHHHHHHHHHHH
Q 001560 920 GASEQAVRDIFSKA 933 (1052)
Q Consensus 920 Gese~~ir~lf~~A 933 (1052)
..+|- +.+-|++|
T Consensus 108 KKTEv-LmenfRRa 120 (456)
T KOG1942|consen 108 KKTEV-LMENFRRA 120 (456)
T ss_pred hHHHH-HHHHHHHH
Confidence 66653 34556665
No 491
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.00072 Score=69.79 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=38.0
Q ss_pred ceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhcccHHHHHHHHHHH
Q 001560 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA 933 (1052)
Q Consensus 880 ~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGese~~ir~lf~~A 933 (1052)
.+++.||||+||||+|+.|++.++.+++.++.--....|...+...+..+.+.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~ 56 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNEL 56 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHH
Confidence 589999999999999999999999998887642212223444444444444443
No 492
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.15 E-value=0.0031 Score=76.31 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=26.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhccC
Q 001560 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1052)
Q Consensus 587 ~~~p~~vLL~GppGTGKTtLAraLA~~L~~~ 617 (1052)
+.++..+=|+|+.|+|||||.+.++..+...
T Consensus 26 ~~~G~riGLvG~NGaGKSTLLkilaG~~~~~ 56 (530)
T COG0488 26 LNPGERIGLVGRNGAGKSTLLKILAGELEPD 56 (530)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHcCCCcCC
Confidence 4556779999999999999999999987543
No 493
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.14 E-value=0.0025 Score=69.28 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=50.9
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCc---cceeeEEEEecccccC-Cc-------------------------
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSL-EK------------------------- 636 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~---~~~~~v~~v~~s~L~~-~~------------------------- 636 (1052)
|++.+.-+.|+|+||||||+++..++....... .....+++++...-.. ..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 466667799999999999999999986543221 0114567777654211 00
Q ss_pred -hhhHHHHhhhhHHHhhcc-CCeEEEEeccchhcc
Q 001560 637 -GPIIRQALSNFISEALDH-APSIVIFDNLDSIIS 669 (1052)
Q Consensus 637 -~~~~~~~l~~~f~~a~~~-~PsIL~IDEiD~L~~ 669 (1052)
..+....+..+....... .+.+|+||-+..++.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 111122222222233344 788999999998863
No 494
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0016 Score=74.71 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=44.7
Q ss_pred ccCCceeEecCCCCchhhHHHHHHHHcCC------------------------eEEEeechhhhhhhhcccHHHHHHHHH
Q 001560 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFS 931 (1052)
Q Consensus 876 ~~~~~iLL~GppGtGKT~lA~alA~~~~~------------------------~~i~v~~s~l~~~yvGese~~ir~lf~ 931 (1052)
+.+-.+||+||+|+||+++|.++|+.+-. ++..+.... -+..+ +-..+|++-+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKSSL--GVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccccC--CHHHHHHHHH
Confidence 34456899999999999999999988722 122221100 00001 1234555555
Q ss_pred HH----hcCCCEEEEEeCCCccC
Q 001560 932 KA----TAAAPCLLFFDEFDSIA 950 (1052)
Q Consensus 932 ~A----~~~~p~ILfiDEid~l~ 950 (1052)
.+ ..+...|++||++|.+.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~ 121 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT 121 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC
Confidence 44 44556799999999994
No 495
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.12 E-value=0.0033 Score=67.51 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=32.0
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecc
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s 630 (1052)
|++.+.-++++|+||+|||+++..+|..+.... ..+.+++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g---~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQG---KKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEECC
Confidence 466667799999999999999999998874322 356666654
No 496
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.11 E-value=0.0019 Score=66.26 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=46.2
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEecccccC----------------CchhhHHHHhhhhHH
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL----------------EKGPIIRQALSNFIS 649 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~~----------------~~~~~~~~~l~~~f~ 649 (1052)
.+.++..+.|.||+|+|||||++.++.......+ -+.++...+.. -+.|+ + -+-.+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~-~--qrl~la 94 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG----EILVDGKEVSFASPRDARRAGIAMVYQLSVGE-R--QMVEIA 94 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEECCcCCHHHHHhcCeEEEEecCHHH-H--HHHHHH
Confidence 3566778999999999999999999987542221 12222222111 11111 1 222345
Q ss_pred HhhccCCeEEEEeccchh
Q 001560 650 EALDHAPSIVIFDNLDSI 667 (1052)
Q Consensus 650 ~a~~~~PsIL~IDEiD~L 667 (1052)
.+....|.++++||...-
T Consensus 95 ral~~~p~illlDEP~~~ 112 (163)
T cd03216 95 RALARNARLLILDEPTAA 112 (163)
T ss_pred HHHhcCCCEEEEECCCcC
Confidence 556678999999998543
No 497
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.11 E-value=0.0034 Score=68.25 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=47.5
Q ss_pred CCCCCceEEEEcCCCchHHHHHHHHHHHh-ccCccceeeEEEEeccccc----------CC-------------------
Q 001560 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSL-EHHKDLVAHIVFVCCSRLS----------LE------------------- 635 (1052)
Q Consensus 586 ~~~~p~~vLL~GppGTGKTtLAraLA~~L-~~~~~~~~~v~~v~~s~L~----------~~------------------- 635 (1052)
+++++.-+++.|+||||||+++..++..+ ..+ ..+.+++...-. +.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g----~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 95 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG----YSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPL 95 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEeccc
Confidence 36667789999999999999976555544 322 233444432100 00
Q ss_pred --chhhHHHHhhhhHHHhhccCCeEEEEeccchhc
Q 001560 636 --KGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1052)
Q Consensus 636 --~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1052)
.....+..+..++.......|.++++|++-.+.
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 001123344455555555678999999998765
No 498
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.09 E-value=0.00082 Score=71.34 Aligned_cols=72 Identities=22% Similarity=0.425 Sum_probs=43.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEe-ccccc---------CCchhhHHHHhhhhHHHhhccCCeEEE
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC-CSRLS---------LEKGPIIRQALSNFISEALDHAPSIVI 660 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~-~s~L~---------~~~~~~~~~~l~~~f~~a~~~~PsIL~ 660 (1052)
+-++++||+||||||+++++++.+..... ..++.+. .-++. ....+.-...+.+.+..+....|.+++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~--~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii 79 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKT--HHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVIL 79 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCC--cEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEE
Confidence 45899999999999999999998863321 1111111 11110 000111112345556666667899999
Q ss_pred Eecc
Q 001560 661 FDNL 664 (1052)
Q Consensus 661 IDEi 664 (1052)
+||+
T Consensus 80 ~gEi 83 (198)
T cd01131 80 VGEM 83 (198)
T ss_pred EcCC
Confidence 9998
No 499
>PRK07261 topology modulation protein; Provisional
Probab=97.09 E-value=0.00088 Score=69.38 Aligned_cols=43 Identities=9% Similarity=0.222 Sum_probs=32.9
Q ss_pred ceeEecCCCCchhhHHHHHHHHcCCeEEEeechhhhhhhhccc
Q 001560 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGAS 922 (1052)
Q Consensus 880 ~iLL~GppGtGKT~lA~alA~~~~~~~i~v~~s~l~~~yvGes 922 (1052)
.+++.|+||+||||+|+.++..++.+++..+.-.....|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCC
Confidence 4899999999999999999999999888776433333344333
No 500
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.08 E-value=0.0047 Score=68.67 Aligned_cols=142 Identities=18% Similarity=0.282 Sum_probs=74.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhccCccceeeEEEEeccccc-------------------CCchhhHHHHhhhhHHHh
Q 001560 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS-------------------LEKGPIIRQALSNFISEA 651 (1052)
Q Consensus 591 ~~vLL~GppGTGKTtLAraLA~~L~~~~~~~~~v~~v~~s~L~-------------------~~~~~~~~~~l~~~f~~a 651 (1052)
..+++.||.|+|||++.-..-.. .+.......++.+|..-.. ....+.....+..++...
T Consensus 50 nsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 45999999999999986554443 1222211223334432111 011111111122222221
Q ss_pred hc-----cCCeEEEEeccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCcCcEEEEEecCCCCCC---c
Q 001560 652 LD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---P 723 (1052)
Q Consensus 652 ~~-----~~PsIL~IDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L---d 723 (1052)
.. ..+-|.++||+|..++. .+ .. .|...+|-.... ..|+.+|+.|.+.+.+ .
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h---------~r--Qt---llYnlfDisqs~------r~Piciig~Ttrld~lE~LE 188 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAPH---------SR--QT---LLYNLFDISQSA------RAPICIIGVTTRLDILELLE 188 (408)
T ss_pred hcCCCCCCceEEEEeehhhccccc---------hh--hH---HHHHHHHHHhhc------CCCeEEEEeeccccHHHHHH
Confidence 11 12345667899988631 11 12 233444433221 2379999999887654 4
Q ss_pred hhhhcCCCccee-eeC-CCCCHHHHHHHHHHHHh
Q 001560 724 QSLTSSGRFDFH-VQL-PAPAASERKAILEHEIQ 755 (1052)
Q Consensus 724 ~aL~r~gRF~~~-i~i-~~Pd~~eR~~IL~~~l~ 755 (1052)
....+ ||... |.+ |+...++...+++..+.
T Consensus 189 KRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 189 KRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 66666 99865 544 44467888888887663
Done!