Query 001560
Match_columns 1052
No_of_seqs 474 out of 3879
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:16:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001560.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_859-862//hhsearch_pdb/001560hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 607.5 44.4 434 550-1049 200-652 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 438.7 35.3 435 550-1049 200-652 (806)
3 3cf2_A TER ATPase, transitiona 1.0 1 1 308.8 24.8 261 550-827 473-747 (806)
4 4b4t_J 26S protease regulatory 1.0 1 1 296.6 23.1 249 549-826 143-392 (405)
5 4b4t_M 26S protease regulatory 1.0 1 1 294.6 22.5 254 548-830 175-429 (434)
6 4b4t_I 26S protease regulatory 1.0 1 1 292.6 23.1 251 548-827 176-427 (437)
7 4b4t_J 26S protease regulatory 1.0 1 1 292.1 17.0 168 839-1048 143-322 (405)
8 4b4t_L 26S protease subunit RP 1.0 1 1 290.3 22.9 250 549-826 176-425 (437)
9 4b4t_H 26S protease regulatory 1.0 1 1 288.5 22.1 249 549-826 204-453 (467)
10 4b4t_K 26S protease regulatory 1.0 1 1 284.6 24.7 250 548-825 166-416 (428)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=607.49 Aligned_cols=434 Identities=31% Similarity=0.505 Sum_probs=386.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 65444433312589999999997-42998421000137899962999968996399999999999414766200699983
Q 001560 550 DSNVSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1052)
Q Consensus 550 ~~~~~~l~G~~~~l~~i~~~l~~-ll~~~~~~~~~~~~~~~p~~ILL~GppGTGKTtLaraLa~~L~~~~~~~~~v~~i~ 628 (1052)
+..+.+++|++..++++.+.+.. +.. +.+|..++..+|+|+|||||||||||++|+++|++++ .++..++
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~---p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~ 270 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRH---PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLIN 270 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHC---CGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEE
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHCCC---HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CEEEEEE
T ss_conf 999035149999999999999987519---8988635899997589779899988999999999719------8399997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 36555772246998766569975204991999905300105899999999812699999999999987132467755767
Q 001560 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1052)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsILiIDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1052)
|.++.+.+.+..++.++.+|..|.+++|+||||||+|.+++.+.+..+ .....+..+|+..|+.+....
T Consensus 271 ~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~----~~~~riv~~LL~~mdg~~~~~------- 339 (806)
T 3cf2_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG----EVERRIVSQLLTLMDGLKQRA------- 339 (806)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC----TTHHHHHHHHHTHHHHCCGGG-------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCC----HHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 379543331678999999999999729929998510023344577887----399999999999974666669-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 68999934899877523211788541552789879999999999886234788988999886316899878999999999
Q 001560 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~rA 788 (1052)
+|++|++||+++.+|++++|+|||++.++++.|+.++|.+||+.++++.... .+..+..+|..|+||+++||..+|++|
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA 418 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEA 418 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8799996698032698885786361688668979899999999985689988-643899999756899899999999999
Q ss_pred HHHHHHHHCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9999851003688------5333445632222200000013344000232346689988766566502188999998625
Q 001560 789 VHAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIEL 862 (1052)
Q Consensus 789 ~~~a~~R~~~~~~------~~~~~~~~~It~eDf~~Al~~~~P~~lr~i~~~~~~~~~~~~~di~Gl~~vk~~L~e~i~~ 862 (1052)
.+.+..|...... ..+......++.+||..|+..+.|+.+++.....+. +.|++++|++++++.+.+.+.+
T Consensus 419 ~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~---v~w~diggl~~~k~~l~e~v~~ 495 (806)
T 3cf2_A 419 ALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ---VTWEDIGGLEDVKRELQELVQY 495 (806)
T ss_dssp HHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCC---CCSTTCCSCHHHHHHHTTTTTT
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCC---CCHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999984145120001332045522556519999999972878311234445788---7888817889999999999975
Q ss_pred CCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 56871344208966677426755898750169899999749809996021233330011099999999997619997999
Q 001560 863 PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLF 942 (1052)
Q Consensus 863 ~~k~~~~~~~~~~~~~~~iLL~GppGtGKT~lAkalA~~~g~~~i~i~~~el~~~yvG~se~~ir~if~~A~~~~p~ILf 942 (1052)
|.++++.|.+.+.+++.++|||||||||||++|+++|.+++.+|+.+++++++++|+|++|++++.+|+.|+..+|||||
T Consensus 496 p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iif 575 (806)
T 3cf2_A 496 PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLF 575 (806)
T ss_dssp TTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 66689999714888886079866877896399999999838966874241121033436899999999999972996352
Q ss_pred EECCCCCCCCCCCC---CCCCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCC
Q ss_conf 90787437767888---831000143022355410233200137556766520133332101346116888365049733
Q 001560 943 FDEFDSIAPKRGHD---NTGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEV 1019 (1052)
Q Consensus 943 iDEid~l~~~r~~~---~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~~~ 1019 (1052)
|||+|+++++|+.. ..++.+|++++ ||++|||+..
T Consensus 576 iDEiDsl~~~R~~~~~~~~~~~~rv~~~------------------------------------------lL~~mdg~~~ 613 (806)
T 3cf2_A 576 FDELDSIAKARGGNIGDGGGAADRVINQ------------------------------------------ILTEMDGMST 613 (806)
T ss_dssp CSCGGGCC--------------CHHHHH------------------------------------------HHHHHHSSCS
T ss_pred CHHHHHHHHCCCCCCCCCCHHHHHHHHH------------------------------------------HHHHHHCCCC
T ss_conf 0425677631588888986699999999------------------------------------------9999748787
Q ss_pred CCCEEEEEECCC---------CCCCCCEEEEECCCCCCC
Q ss_conf 598699996799---------988854299815884000
Q 001560 1020 LTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 1020 ~~~v~vi~~t~~---------~~~r~d~~~~~~~p~~~~ 1049 (1052)
.++|+||||||+ ||||||+.+|+++|+.+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~ 652 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CH
T ss_pred CCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHH
T ss_conf 799899993798043898471778550799979969999
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=438.70 Aligned_cols=435 Identities=31% Similarity=0.492 Sum_probs=366.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 65444433312589999999997429984210001378999629999689963999999999994147662006999833
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~l~~i~~~l~~ll~~~~~~~~~~~~~~~p~~ILL~GppGTGKTtLaraLa~~L~~~~~~~~~v~~i~~ 629 (1052)
...+.+++|.+..++.+.+.+...+. .+.+|..++..++.++||+||||||||+++++++..++ ..++.++|
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~--~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~------~~~i~v~~ 271 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING 271 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHH--CGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT------CEEEEEEH
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC------CCEEEEEC
T ss_conf 89988828809999999999998742--98999863889997389989399987999999999719------96899975
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 65557722469987665699752049919999053001058999999998126999999999999871324677557676
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsILiIDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
.++.+.+.+.....+..+|+.+....|+++|+||+|.+.+.+... .......+...|...++...... .
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~~~~~Ll~ll~g~~~~~-------~ 340 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRA-------H 340 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC----CSHHHHHHHHHHHHHHHSSCTTS-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHCCCC-------C
T ss_conf 576544101589999999999986499579830077751114666----31688999999999865411466-------1
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89999348998775232117885415527898799999999998862347889889998863168998789999999999
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~L~~~L~s~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~rA~ 789 (1052)
+++|+++|+++.+++.+.+.+||...+.++.|+.++|.+|++.++.+.... .+..+..++..+.||+++|+..++.++.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~ 419 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 787602398100499986465544435569999999999999987338776-2200677777614753689999999999
Q ss_pred HHHHHHHCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9998510036885------3334456322222000000133440002323466899887665665021889999986255
Q 001560 790 HAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP 863 (1052)
Q Consensus 790 ~~a~~R~~~~~~~------~~~~~~~~It~eDf~~Al~~~~P~~lr~i~~~~~~~~~~~~~di~Gl~~vk~~L~e~i~~~ 863 (1052)
..+..+....... ........++.+||..++....|...+......+ ...|++++|++++++.+.+.+.++
T Consensus 420 ~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~---~v~~~di~gl~~vk~~l~~~v~~~ 496 (806)
T 1ypw_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVP---QVTWEDIGGLEDVKRELQELVQYP 496 (806)
T ss_dssp HHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCC---CCSSCSSSCCCCHHHHHHTTTTSS
T ss_pred HHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC---CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99876420101155420101244455555665311112357144420002575---421111244302222189999755
Q ss_pred CCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 68713442089666774267558987501698999997498099960212333300110999999999976199979999
Q 001560 864 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFF 943 (1052)
Q Consensus 864 ~k~~~~~~~~~~~~~~~iLL~GppGtGKT~lAkalA~~~g~~~i~i~~~el~~~yvG~se~~ir~if~~A~~~~p~ILfi 943 (1052)
.+++..+...+..++.++||+||||||||++|+++|..++.+++.++++++.++|+|+++..++.+|+.|+...|||+||
T Consensus 497 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~i 576 (806)
T 1ypw_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp SSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCC
T ss_pred HHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 53639897548887753689779998789999999998489879986167655305754788999999987069859999
Q ss_pred ECCCCCCCCCCCCC---CCCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 07874377678888---310001430223554102332001375567665201333321013461168883650497335
Q 001560 944 DEFDSIAPKRGHDN---TGVTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYILVNFLISACPCFQQFLTELDGVEVL 1020 (1052)
Q Consensus 944 DEid~l~~~r~~~~---~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~g~~~~ 1020 (1052)
||+|++++.|+... .+...+++++ ||++||+....
T Consensus 577 DEid~l~~~r~~~~~~~~~~~~~v~~~------------------------------------------LL~~ld~~~~~ 614 (806)
T 1ypw_A 577 DELDSIAKARGGNIGDGGGAADRVINQ------------------------------------------ILTEMDGMSTK 614 (806)
T ss_dssp SSHHHHCCTTTTCCSHHHHHHHHHHHH------------------------------------------HHTTCC-----
T ss_pred ECHHHHHHHCCCCCCCCCHHHHHHHHH------------------------------------------HHHHHHCCCCC
T ss_conf 874454211268777764168999999------------------------------------------99987545666
Q ss_pred CCEEEEEECCC---------CCCCCCEEEEECCCCCCC
Q ss_conf 98699996799---------988854299815884000
Q 001560 1021 TGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1049 (1052)
Q Consensus 1021 ~~v~vi~~t~~---------~~~r~d~~~~~~~p~~~~ 1049 (1052)
.+++||+|||+ |||||++.+++++|+.+.
T Consensus 615 ~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~ 652 (806)
T 1ypw_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp -CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSH
T ss_pred CCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCHHH
T ss_conf 87699984387122798783765567305559979999
No 3
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=308.81 Aligned_cols=261 Identities=21% Similarity=0.305 Sum_probs=213.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 65444433312589999999997429984210001378999629999689963999999999994147662006999833
Q 001560 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1052)
Q Consensus 550 ~~~~~~l~G~~~~l~~i~~~l~~ll~~~~~~~~~~~~~~~p~~ILL~GppGTGKTtLaraLa~~L~~~~~~~~~v~~i~~ 629 (1052)
...+.+++|++..++.+.+.+ .+....+..|...+..+++++|||||||||||++|+++|.+++ ..++.+++
T Consensus 473 ~v~w~diggl~~~k~~l~e~v--~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~------~~f~~v~~ 544 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELV--QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKG 544 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTT--TTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT------CEEEECCH
T ss_pred CCCHHHHCCHHHHHHHHHHHH--HHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHC------CCEEEECC
T ss_conf 878888178899999999999--7566689999714888886079866877896399999999838------96687424
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 65557722469987665699752049919999053001058999999998126999999999999871324677557676
Q 001560 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1052)
Q Consensus 630 s~L~~~~~~~~~~~l~~~f~~a~~~~PsILiIDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1052)
+++...+.|..++.++.+|..|+..+||||||||+|.+++.+....+. ......++..+|+..|+++.... +
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~-~~~~~~rv~~~lL~~mdg~~~~~-------~ 616 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD-GGGAADRVINQILTEMDGMSTKK-------N 616 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSS-------S
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC-------C
T ss_conf 112103343689999999999997299635204256776315888889-86699999999999974878779-------9
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89999348998775232117885415527898799999999998862347889889998863168998789999999999
Q 001560 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1052)
Q Consensus 710 V~vIattn~~~~L~~~L~s~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~rA~ 789 (1052)
|++|++||+++.||++++|+|||++.++++.|+.++|.+||+.++++..+. .+..+..+|..|+||+++||..+|++|.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHH
T ss_pred EEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 899993798043898471778550799979969999999999985679998-7789999997689999999999999999
Q ss_pred HHHHHHHCCCCCC--------------CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998510036885--------------3334456322222000000133440
Q 001560 790 HAAVGRYLHSDSS--------------FEKHIKPTLVRDDFSQAMHEFLPVA 827 (1052)
Q Consensus 790 ~~a~~R~~~~~~~--------------~~~~~~~~It~eDf~~Al~~~~P~~ 827 (1052)
..|+++....... ......+.++++||..|+....|+.
T Consensus 696 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 696 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp HHHHHHHHC-----------------------CCC----CCTTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999985644433301574100123345668647999999998679999
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=296.58 Aligned_cols=249 Identities=22% Similarity=0.345 Sum_probs=214.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 565444433312589999999997-4299842100013789996299996899639999999999941476620069998
Q 001560 549 FDSNVSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 549 ~~~~~~~l~G~~~~l~~i~~~l~~-ll~~~~~~~~~~~~~~~p~~ILL~GppGTGKTtLaraLa~~L~~~~~~~~~v~~i 627 (1052)
.+..+.+++|++.+++++.+.+.. +. .+.+|..+++++|+|+|||||||||||++|+++|.+++ .++..+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~---~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v 213 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVK---HPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD------CKFIRV 213 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHH---CHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEE
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHH---CHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC------CCCEEE
T ss_conf 999888828889999999999999874---99999867999888258858999987899999998518------885288
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 33655577224699876656997520499199990530010589999999981269999999999998713246775576
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsILiIDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
+++++...+.|+.++.++.+|..|...+|+||||||+|.+++.+.+..+. ...........|+..||++....
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~~------ 286 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG-GDSEVQRTMLELLNQLDGFETSK------ 286 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG-GGGHHHHHHHHHHHHHHTTTCCC------
T ss_pred EHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC------
T ss_conf 86895113354689999999999987099467653341111577888999-76899999999999604338888------
Q ss_pred CCEEEEEECCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 76899993489987752321178854155278987999999999988623478898899988631689987899999999
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~L~~~L~s~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~r 787 (1052)
+|++|++||+++.+|++++|+|||++.++++.|+.++|.+||+.++++..+. .+..+..+|..|+||+|+||+.+|++
T Consensus 287 -~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~e 364 (405)
T 4b4t_J 287 -NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTE 364 (405)
T ss_dssp -CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred -CEEEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf -7578812698144899672877676699769969999999999985599999-65799999987799999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998510036885333445632222200000013344
Q 001560 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1052)
Q Consensus 788 A~~~a~~R~~~~~~~~~~~~~~~It~eDf~~Al~~~~P~ 826 (1052)
|...|+++ ....++.+||..|+....+.
T Consensus 365 A~~~Air~-----------~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 365 AGMYALRE-----------RRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHT-----------TCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-----------CCCCCCHHHHHHHHHHHHCC
T ss_conf 99999986-----------99875999999999998572
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=294.64 Aligned_cols=254 Identities=20% Similarity=0.301 Sum_probs=216.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 6565444433312589999999997-429984210001378999629999689963999999999994147662006999
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF 626 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~l~~i~~~l~~-ll~~~~~~~~~~~~~~~p~~ILL~GppGTGKTtLaraLa~~L~~~~~~~~~v~~ 626 (1052)
..+.++.+++|++..++++.+.+.. +. .+.+|...++++|+|+|||||||||||++|+++|.+++ .++..
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~---~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~ 245 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMK---RADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN------ATFLK 245 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHH---CSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEE
T ss_pred CCCCCHHHCCCHHHHHHHHHHHHHHHHH---CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CCEEE
T ss_conf 9799867609579999999999999974---99999867999887268779499988999999999959------98899
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 83365557722469987665699752049919999053001058999999998126999999999999871324677557
Q 001560 627 VCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1052)
Q Consensus 627 i~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsILiIDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1052)
++++.+...+.|...+.++.+|..+..++|+||||||+|.+++.+.+...... .........|+..++.+....
T Consensus 246 v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~-~~~~~~~~~lL~~ldg~~~~~----- 319 (434)
T 4b4t_M 246 LAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGD-REVQRTMLELLNQLDGFSSDD----- 319 (434)
T ss_dssp EEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTT-HHHHHHHHHHHHHHTTSCSSC-----
T ss_pred EEHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCC-----
T ss_conf 86446431345638999999999998619908960332566522577888874-699999999999713668889-----
Q ss_pred CCCEEEEEECCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 67689999348998775232117885415527898799999999998862347889889998863168998789999999
Q 001560 707 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1052)
Q Consensus 707 ~~~V~vIattn~~~~L~~~L~s~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~ 786 (1052)
+|++|+|||+++.+|++++|+|||++.++++.|+.++|.+||+.++++.... .+..+..+|..|+||+|+||+.+|+
T Consensus 320 --~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 320 --RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp --SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred --CEEEEEECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf --9899994899223399671577403899808959999999999985689998-7679999998689989999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999985100368853334456322222000000133440002
Q 001560 787 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRD 830 (1052)
Q Consensus 787 rA~~~a~~R~~~~~~~~~~~~~~~It~eDf~~Al~~~~P~~lr~ 830 (1052)
+|...|+++ ....++.+||..|+....|...+.
T Consensus 397 eA~~~a~r~-----------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 397 EAGMIALRN-----------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp HHHHHHHHH-----------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred HHHHHHHHC-----------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 999999986-----------998769999999999973777757
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=292.57 Aligned_cols=251 Identities=20% Similarity=0.289 Sum_probs=214.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 6565444433312589999999997-429984210001378999629999689963999999999994147662006999
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF 626 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~l~~i~~~l~~-ll~~~~~~~~~~~~~~~p~~ILL~GppGTGKTtLaraLa~~L~~~~~~~~~v~~ 626 (1052)
..+..+.+++|++..++++.+.+.. +. .+.+|...+.++|+|+|||||||||||++|+++|.+++ .++..
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~---~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~ 246 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLT---HPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS------ATFLR 246 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHH---CCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT------CEEEE
T ss_pred CCCCCCEECCCHHHHHHHHHHHHHHHHH---CHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHC------CCEEE
T ss_conf 8998600557699999999999999876---99999867999777884488999639999999999859------98799
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 83365557722469987665699752049919999053001058999999998126999999999999871324677557
Q 001560 627 VCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1052)
Q Consensus 627 i~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsILiIDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1052)
++++++...+.+..++.++.+|..|...+|+||||||+|.+++.+.+...... .........|+..++......
T Consensus 247 v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~-~~~~~~l~~LL~~lDg~~~~~----- 320 (437)
T 4b4t_I 247 IVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGE-REIQRTMLELLNQLDGFDDRG----- 320 (437)
T ss_dssp EESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSC-CHHHHHHHHHHHHHHHCCCSS-----
T ss_pred EEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCC-----
T ss_conf 88799531447669999999999998659918987612220366778887765-899999999999724767889-----
Q ss_pred CCCEEEEEECCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 67689999348998775232117885415527898799999999998862347889889998863168998789999999
Q 001560 707 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1052)
Q Consensus 707 ~~~V~vIattn~~~~L~~~L~s~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~ 786 (1052)
++++|+|||+++.+|++++|+|||+++++++.|+.++|.+||+.++++..+. .+..+..+|..|+||+++||+.+|+
T Consensus 321 --~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 321 --DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp --SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred --CEEEEEECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf --9799995798055599886488602799808969999999999996489999-7679999997679998999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999985100368853334456322222000000133440
Q 001560 787 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1052)
Q Consensus 787 rA~~~a~~R~~~~~~~~~~~~~~~It~eDf~~Al~~~~P~~ 827 (1052)
+|...|+++ ....++.+||..|+....+..
T Consensus 398 eA~~~Air~-----------~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 398 EAGLLALRE-----------RRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHHHT-----------TCSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-----------CCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999984-----------899669999999999870798
No 7
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=292.15 Aligned_cols=168 Identities=36% Similarity=0.556 Sum_probs=157.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHH
Q ss_conf 98876656650218899999862556871344208966677426755898750169899999749809996021233330
Q 001560 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1052)
Q Consensus 839 ~~~~~~di~Gl~~vk~~L~e~i~~~~k~~~~~~~~~~~~~~~iLL~GppGtGKT~lAkalA~~~g~~~i~i~~~el~~~y 918 (1052)
+.+.|+|++|++++++.|++.+.+|+++++.|.+.+++++.|+|||||||||||++|+++|.+++.+|+.++++++.++|
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHCCC
T ss_conf 99988882888999999999999987499999867999888258858999987899999998518885288868951133
Q ss_pred HCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC---CCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHH
Q ss_conf 01109999999999761999799990787437767888831---000143022355410233200137556766520133
Q 001560 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQVSSTSYLFIIYFWEVGKKEGVVPYDIYI 995 (1052)
Q Consensus 919 vG~se~~ir~if~~A~~~~p~ILfiDEid~l~~~r~~~~~~---~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 995 (1052)
+|++++.++.+|..|+..+|||+||||+|+++++|+.+..+ ...+++++
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~---------------------------- 274 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLE---------------------------- 274 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHH----------------------------
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHH----------------------------
T ss_conf 5468999999999998709946765334111157788899976899999999----------------------------
Q ss_pred HHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCC---------CCCCCCEEEEECCCCCC
Q ss_conf 332101346116888365049733598699996799---------98885429981588400
Q 001560 996 LVNFLISACPCFQQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1048 (1052)
Q Consensus 996 ~~~~~~~~~~~~~~ll~~~~g~~~~~~v~vi~~t~~---------~~~r~d~~~~~~~p~~~ 1048 (1052)
||++|||+....+|+||||||+ ||||||+.|++++|+.+
T Consensus 275 --------------lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~ 322 (405)
T 4b4t_J 275 --------------LLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322 (405)
T ss_dssp --------------HHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred --------------HHHHHHCCCCCCCEEEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHH
T ss_conf --------------999604338888757881269814489967287767669976996999
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=290.34 Aligned_cols=250 Identities=20% Similarity=0.285 Sum_probs=213.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 56544443331258999999999742998421000137899962999968996399999999999414766200699983
Q 001560 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1052)
Q Consensus 549 ~~~~~~~l~G~~~~l~~i~~~l~~ll~~~~~~~~~~~~~~~p~~ILL~GppGTGKTtLaraLa~~L~~~~~~~~~v~~i~ 628 (1052)
.+..+.+++|++..++++.+.+...+ ..+.+|...++++|+|+|||||||||||++|+++|.+++ .++..++
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl--~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~ 247 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPL--KNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSP 247 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHH--HCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHH--HCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEEE
T ss_conf 99896671785999999999999987--499999867989787699989999849999999999859------9989984
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 36555772246998766569975204991999905300105899999999812699999999999987132467755767
Q 001560 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1052)
Q Consensus 629 ~s~L~~~~~~~~~~~l~~~f~~a~~~~PsILiIDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1052)
++.+.+.+.+...+.++.+|..|..++|+||||||+|.+++.+.+.... ...........|+..|+++....
T Consensus 248 ~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~~------- 319 (437)
T 4b4t_L 248 ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS-ADREIQRTLMELLTQMDGFDNLG------- 319 (437)
T ss_dssp GGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS-STTHHHHHHHHHHHHHHSSSCTT-------
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 1462055201789999999999986389646420443333333447887-53689999999999834666779-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 68999934899877523211788541552789879999999999886234788988999886316899878999999999
Q 001560 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1052)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~rA 788 (1052)
++++|+|||+++.+|++++|+|||+++++++.|+.++|.+||+.++++.... ++..+..+|..|+||+++||..+|.+|
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA 398 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEA 398 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred CEEEEEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8699993399033189782777102001359969999999999986589998-645899999768999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998510036885333445632222200000013344
Q 001560 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1052)
Q Consensus 789 ~~~a~~R~~~~~~~~~~~~~~~It~eDf~~Al~~~~P~ 826 (1052)
...|+.+ ....++.+||..|+....|.
T Consensus 399 ~~~air~-----------~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 399 GFFAIRD-----------DRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHT-----------TCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHC-----------CCCCCCHHHHHHHHHHHHHC
T ss_conf 9999986-----------99877999999999998750
No 9
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=288.51 Aligned_cols=249 Identities=20% Similarity=0.257 Sum_probs=211.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 565444433312589999999997-4299842100013789996299996899639999999999941476620069998
Q 001560 549 FDSNVSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 549 ~~~~~~~l~G~~~~l~~i~~~l~~-ll~~~~~~~~~~~~~~~p~~ILL~GppGTGKTtLaraLa~~L~~~~~~~~~v~~i 627 (1052)
.+..+.+++|++..++++.+.+.. +. .+++|..+++++|+|+|||||||||||++|+++|++++ .++..+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~---~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~v 274 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLL---SPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD------ATFIRV 274 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHH---CHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEE
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHC---CHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC------CCEEEE
T ss_conf 999878854599999999999998842---99999877999998147648999809999999984468------986998
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 33655577224699876656997520499199990530010589999999981269999999999998713246775576
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsILiIDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
+++.+.+.+.|..++.++.+|..|..++|+||||||+|.+++.+.+.... ...........++..|+......
T Consensus 275 s~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~~------ 347 (467)
T 4b4t_H 275 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG-GDNEVQRTMLELITQLDGFDPRG------ 347 (467)
T ss_dssp EGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG-GGGHHHHHHHHHHHHHHSSCCTT------
T ss_pred EHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC------
T ss_conf 86995026677899999999999876178467522321101355676778-62789999999999865557888------
Q ss_pred CCEEEEEECCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 76899993489987752321178854155278987999999999988623478898899988631689987899999999
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1052)
Q Consensus 708 ~~V~vIattn~~~~L~~~L~s~gRF~~~i~i~~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~r 787 (1052)
+|++|+|||+++.+|++++|+|||+++++|+.|+.++|.+||+.++++..+. .+..+..+|..|+||+++||+.+|++
T Consensus 348 -~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~e 425 (467)
T 4b4t_H 348 -NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTE 425 (467)
T ss_dssp -TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred -CEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf -3798828789311795463666550799838969999999999985489998-77799999977799999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998510036885333445632222200000013344
Q 001560 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1052)
Q Consensus 788 A~~~a~~R~~~~~~~~~~~~~~~It~eDf~~Al~~~~P~ 826 (1052)
|...|+++ ....++.+||..|+....+.
T Consensus 426 Aa~~Air~-----------~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 426 AGMFAIRA-----------RRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHH-----------TCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-----------CCCCCCHHHHHHHHHHHHCC
T ss_conf 99999983-----------88766999999999999647
No 10
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=284.60 Aligned_cols=250 Identities=20% Similarity=0.291 Sum_probs=213.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 65654444333125899999999974299842100013789996299996899639999999999941476620069998
Q 001560 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1052)
Q Consensus 548 ~~~~~~~~l~G~~~~l~~i~~~l~~ll~~~~~~~~~~~~~~~p~~ILL~GppGTGKTtLaraLa~~L~~~~~~~~~v~~i 627 (1052)
..+..+.+++|++..++.+.+.+...+ ..+.+|...|+++|+|+|||||||||||++|+++|++++ .++..+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl--~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v 237 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPL--VQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRV 237 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHH--HCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEE
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHH--HCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEE
T ss_conf 999988885169999999999999987--399999867999886588889899888999999999867------996999
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 33655577224699876656997520499199990530010589999999981269999999999998713246775576
Q 001560 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1052)
Q Consensus 628 ~~s~L~~~~~~~~~~~l~~~f~~a~~~~PsILiIDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1052)
+++++.+.+.|...+.++.+|..|...+|+|+||||+|.+++.+.+..... .....++...|+..|+++....
T Consensus 238 ~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~-~~~~~r~l~~lL~~ldg~~~~~------ 310 (428)
T 4b4t_K 238 NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMDGFDQST------ 310 (428)
T ss_dssp EGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCC-CCHHHHHHHHHHHHHHHSCSSC------
T ss_pred ECCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC------
T ss_conf 330443145460599999999999973997463002243303556787888-7189999999999843878779------
Q ss_pred CCEEEEEECCCCCCCCHHHHCCCCCCEEEECC-CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 76899993489987752321178854155278-98799999999998862347889889998863168998789999999
Q 001560 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP-APAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1052)
Q Consensus 708 ~~V~vIattn~~~~L~~~L~s~gRF~~~i~i~-~Pd~~eR~~IL~~~l~~~~~~~sd~~l~~La~~teG~s~~DL~~Lv~ 786 (1052)
++++|+|||+++.+|++++|+|||++.++++ .|+.++|.+||+.++++..+. ++..+..+|..|+||+|+||..+|+
T Consensus 311 -~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 311 -NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp -SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred -CEEEEEECCCHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf -97999961981556966636875159998199999999999999985579999-6358999997779988999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999851003688533344563222220000001334
Q 001560 787 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1052)
Q Consensus 787 rA~~~a~~R~~~~~~~~~~~~~~~It~eDf~~Al~~~~P 825 (1052)
+|...|+++ ....++.+||..|+....+
T Consensus 389 eA~~~a~r~-----------~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 389 EAGLRAVRK-----------NRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHT-----------TCSSBCHHHHHHHHHHHSC
T ss_pred HHHHHHHHC-----------CCCCCCHHHHHHHHHHHHC
T ss_conf 999999987-----------9987799999999997617
Done!