Query 001561
Match_columns 1052
No_of_seqs 820 out of 6882
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 16:42:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001561.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_859-862//hhsearch_pdb/001561hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 713.4 40.9 627 37-677 8-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 542.4 39.2 554 86-644 100-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 504.6 40.8 584 69-667 4-624 (680)
4 4eco_A Uncharacterized protein 1.0 1 1 493.3 25.7 498 37-618 26-600 (636)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 483.4 37.9 509 84-646 22-564 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 480.3 38.4 536 62-667 3-562 (606)
7 4ecn_A Leucine-rich repeat pro 1.0 1 1 477.1 33.5 520 35-642 263-864 (876)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 474.7 34.0 498 86-646 57-564 (606)
9 1ziw_A TOLL-like receptor 3; i 1.0 1 1 472.3 44.2 529 86-646 49-626 (680)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 464.5 34.7 531 67-646 5-562 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=713.39 Aligned_cols=627 Identities=33% Similarity=0.520 Sum_probs=364.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCC---CCCCCC------
Q ss_conf 89988899999999518999887786799998302113619999999889389998048997434---772222------
Q 001561 37 SCDPSDLLALKEFAGNLTNGSIITSWSNESMCCQWDGVVCGHGSTGSNAGRVTMLILPRKGLKGI---IPRSLG------ 107 (1052)
Q Consensus 37 ~~~~~~~~aL~~~~~~~~~~~~~~sw~~~~~~c~w~gv~C~~~~~~~~~~~v~~l~l~~~~l~~~---~~~~l~------ 107 (1052)
.+.++|++||++||+++.++..+++|..+++||.|+||+|+ .++|+.|+|.+.++.|. +++++.
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~-------~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-------DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE-------TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEC-------CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 68789999999999667896214687899987688413878-------99278987789986775576696573168022
Q ss_pred -----------------CCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCC
Q ss_conf -----------------886789686679978998960--25588876488346772448544323-4667711898057
Q 001561 108 -----------------HLNQLKLLDLSCNHLEGVVPV--ELSNLKQLEVLDLSHNMLSGPVSGML-AGLNLIQSLNVSS 167 (1052)
Q Consensus 108 -----------------~l~~L~~L~Ls~n~i~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~ 167 (1052)
.+++|++|+|++|.+++.+|. .++.+++|++|+|++|.+.+..+..+ ..+++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 46786888678703324578899898989857870789678727889998989688267747977856388999898979
Q ss_pred CCCCCCCCC----CCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 656774333----3457752199812873578630455411443424435674333345668899999889831666999
Q 001561 168 NSFNGSLFE----LGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNHFMGSLQGLDHSPSLKQLHVDNNLLGG 243 (1052)
Q Consensus 168 N~l~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~l~~~~~L~~L~L~~N~l~~ 243 (1052)
|.+++.... +..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.++.+..+++|++|++++|.+++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS
T ss_pred CCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 835885871556643589889898978803465784---54786898989288278877111269999989794885878
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 898121289998599833676773034521289988599826986789873000584-4445102467754587784333
Q 001561 244 DLPDSLYSMSSLQHVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFSGKLPNVLGNL-TQLEFFVAHSNSFSGPLPLSLS 322 (1052)
Q Consensus 244 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~l~ 322 (1052)
.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|+.|++++|.+.+.+|..++
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 16577744888898989888665716724--3687898979178557725888884468688998968967784236775
Q ss_pred CCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCC-------------------------C--CCC
Q ss_conf 5788849990286223757756-65687665641355446699993113-------------------------8--876
Q 001561 323 LCSKLHVLDLRNNSLTGPIDLN-FSGLSSLCTLDLATNHFSGPLPNSLS-------------------------D--CHD 374 (1052)
Q Consensus 323 ~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~p~~l~-------------------------~--l~~ 374 (1052)
.+++|++|++++|.+.+.++.. +..+++|++|++++|.+++.+|..+. . +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCC
T ss_conf 58776677897885257379788724888878848478437623098986322771998627874787676665332477
Q ss_pred CCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 66453245324345831001677675785258867777664000013766526742456567668955458776648981
Q 001561 375 LKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPENVGGFESLMVLAL 454 (1052)
Q Consensus 375 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 454 (1052)
|+.|++++|.+++.+|..+..+++|+.|++++|.+.+... ..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC--HHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEE
T ss_conf 6189897784654248777568987989895884668546--77744998898989788154718978828777329990
Q ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 58835457513232278995894757637899991000389987695027956445881046664300268999999877
Q 001561 455 GNCGLKGHIPVWLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGEIPKSLTELKSLISSNCTSSNPTAS 534 (1052)
Q Consensus 455 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~ 534 (1052)
++|.+.+.+|..+..+++|+.|++++|++++.+|.+++.+++|++|++++|.+++.+|..+..+++|..++.........
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 19951375887881699899897539951896876885689999898978943374887770889899898988846882
Q ss_pred CCCCC------------------EEECC----------------------------CCCCCC----------CCCCCCCC
Q ss_conf 88552------------------02014----------------------------567986----------77888999
Q 001561 535 AGIPL------------------YVKHN----------------------------RSTNGL----------PYNQASSF 558 (1052)
Q Consensus 535 ~~~~~------------------~~~~~----------------------------~~~~~l----------~~~~~~~~ 558 (1052)
..... +.... .....+ ........
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCC
T ss_conf 79578604212232013454211113444322223322210013556323200232110011331004627433403356
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 98344103750115993432543455350238364201797742556767643778857899971233735667046015
Q 001561 559 PPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSVAN 638 (1052)
Q Consensus 559 ~~~l~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~ 638 (1052)
++.+++++|+++|.+|.+++.++.|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.|++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 65797858801555877884141578784868803887896784777899898978802386886775788789787968
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 524247999985577888764589887579999998767
Q 001561 639 NHLQGTIPTGGQFYSFPNSSFEGNPGLCGEIDSPCDSMH 677 (1052)
Q Consensus 639 N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~ 677 (1052)
|+++|.||.+++|.++...+|.|||++||.+..+|....
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred CCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCC
T ss_conf 815560899601024897775698321088776788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=542.40 Aligned_cols=554 Identities=34% Similarity=0.488 Sum_probs=383.8
Q ss_pred CCEEEEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCC---CC----
Q ss_conf 9389998048997434772--22288678968667997899896025-58887648834677244854432---34----
Q 001561 86 GRVTMLILPRKGLKGIIPR--SLGHLNQLKLLDLSCNHLEGVVPVEL-SNLKQLEVLDLSHNMLSGPVSGM---LA---- 155 (1052)
Q Consensus 86 ~~v~~l~l~~~~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~~---~~---- 155 (1052)
.+++.|+|.++.+.|.++. .++++++|++|+|++|.+.+.+|..+ ..+++|++|||++|.+++..+.. +.
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCC
T ss_conf 88998989898578707896787278899989896882677479778563889998989798358858715566435898
Q ss_pred ------------------CCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf ------------------66771189805765677433334577521998128735786304554114434244356743
Q 001561 156 ------------------GLNLIQSLNVSSNSFNGSLFELGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNH 217 (1052)
Q Consensus 156 ------------------~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 217 (1052)
.+++|++|++++|.+.+....++.+++|++|++++|.+++.++. .+..+++|+.|++++|.
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCC
T ss_conf 89898978803465784547868989892882788771112699999897948858781657-77448888989898886
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 33345668899999889831666999898121289-99859983367677303452128998859982698678987300
Q 001561 218 FMGSLQGLDHSPSLKQLHVDNNLLGGDLPDSLYSM-SSLQHVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFSGKLPNV 296 (1052)
Q Consensus 218 l~~~~~~l~~~~~L~~L~L~~N~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 296 (1052)
+.+..+.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..+.++++|++|++++|++++.+|..
T Consensus 259 l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 259 FVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp CEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred CCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 65716724-36878989791785577258888844686889989689677842367755877667789788525737978
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf -05844445102467754587784333578-8849990286223757756656--8766564135544669999311388
Q 001561 297 -LGNLTQLEFFVAHSNSFSGPLPLSLSLCS-KLHVLDLRNNSLTGPIDLNFSG--LSSLCTLDLATNHFSGPLPNSLSDC 372 (1052)
Q Consensus 297 -l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l 372 (1052)
++++++|+.|++++|.+.+.+|..+..++ +|+.|++++|.+++..+..+.. +++|++|++++|.+++.+|..+..+
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 87248888788484784376230989863227719986278747876766653324776189897784654248777568
Q ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 76664532453243458310016776757852588677776640000137665267424565676689554587766489
Q 001561 373 HDLKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPENVGGFESLMVL 452 (1052)
Q Consensus 373 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 452 (1052)
++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+... ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC--HHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEE
T ss_conf 987989895884668546777449988989897881547189--788287773299901995137588788169989989
Q ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCC--
Q ss_conf 815883545751323227899589475763789999100038998769502795644588104666430026899999--
Q 001561 453 ALGNCGLKGHIPVWLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGEIPKSLTELKSLISSNCTSSN-- 530 (1052)
Q Consensus 453 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~-- 530 (1052)
++++|++.+.+|.++..+++|+.|++++|++++.+|..++.+++|++|++++|.++|.+|..+.....+...+.....
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCC
T ss_conf 75399518968768856899998989789433748877708898998989888468827957860421223201345421
Q ss_pred -------------------------------------------------CCCC----CCCCCEEECCCCCCCCCC-CCCC
Q ss_conf -------------------------------------------------9877----885520201456798677-8889
Q 001561 531 -------------------------------------------------PTAS----AGIPLYVKHNRSTNGLPY-NQAS 556 (1052)
Q Consensus 531 -------------------------------------------------~~~~----~~~~~~~~~~~~~~~l~~-~~~~ 556 (1052)
+... .-..+.+.+|..+...+. ....
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 11134443222233222100135563232002321100113310046274334033566579785880155587788414
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99983441037501159934325434553502383642017977425567676437788578999712337356670460
Q 001561 557 SFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSV 636 (1052)
Q Consensus 557 ~~~~~l~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 636 (1052)
..++.++|++|+++|.+|.+++++++|+.|||++|+++|.+|..++.+++|++|++++|+++|.+|.. ..+..+....+
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~ 734 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKF 734 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGG
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHH
T ss_conf 15787848688038878967847778998989788023868867757887897879688155608996-01024897775
Q ss_pred CCC-CCCCC
Q ss_conf 155-24247
Q 001561 637 ANN-HLQGT 644 (1052)
Q Consensus 637 ~~N-~l~~~ 644 (1052)
.+| .++|.
T Consensus 735 ~gN~~Lcg~ 743 (768)
T 3rgz_A 735 LNNPGLCGY 743 (768)
T ss_dssp CSCTEEEST
T ss_pred CCCCHHCCC
T ss_conf 698321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=504.61 Aligned_cols=584 Identities=21% Similarity=0.211 Sum_probs=452.7
Q ss_pred CEEEEEEECCCCCC----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 30211361999999----98893899980489974347722228867896866799789989602558887648834677
Q 001561 69 CQWDGVVCGHGSTG----SNAGRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQLEVLDLSHN 144 (1052)
Q Consensus 69 c~w~gv~C~~~~~~----~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N 144 (1052)
|.++.|.|...... ..+.+++.|++.++++++..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EECCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 67874487779805264124888768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC
Q ss_conf 244854432346677118980576567743-3334577521998128735786304554114434244356743333456
Q 001561 145 MLSGPVSGMLAGLNLIQSLNVSSNSFNGSL-FELGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNHFMGSLQ 223 (1052)
Q Consensus 145 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 223 (1052)
.++..++..|+.+.+|++|++++|.+.+.+ ..+..+++|++|++++|.+++.. ...+..+++|+.|++++|.+++.+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 567568545303888898989899668539667415678888989899524667-2111245567779745884365297
Q ss_pred C---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHC---CCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 6---88999998898316669998981212899985998336767730345212---89988599826986789873000
Q 001561 224 G---LDHSPSLKQLHVDNNLLGGDLPDSLYSMSSLQHVSLSVNNFSGQLSEKIS---NLTSLRHLIIFGNQFSGKLPNVL 297 (1052)
Q Consensus 224 ~---l~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p~~l 297 (1052)
. ...+++|+.|++++|.+++..+..+..+.+|+.|++.++.+.+.....+. ..++|+.|++++|.+++..|..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
T ss_conf 88624466632179888982565581555322344554305664680567778777531510088745774364686675
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-----CCCC---
Q ss_conf 58444--4510246775458778433357888499902862237577566568766564135544669-----9993---
Q 001561 298 GNLTQ--LEFFVAHSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSG-----PLPN--- 367 (1052)
Q Consensus 298 ~~l~~--L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~p~--- 367 (1052)
..++. |+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|+.|++++|...+ .+|.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCH
T ss_conf 14676778887787887675680211674105685577885676586562678885577363313213333355454386
Q ss_pred -CCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC--CCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf -11388766645324532434583100167767578525886777--766400001376652674245656766895545
Q 001561 368 -SLSDCHDLKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNH--LSGTLSVLQQCKNLTTLILTKNFVGEEIPENVG 444 (1052)
Q Consensus 368 -~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 444 (1052)
.+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.. ++.........++|+.|++++|.+....+..+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred HHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHH
T ss_conf 56246777888879898268788557406568728988798014432353220245568676688999977767754420
Q ss_pred CCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC--CCCCCCHHHHHHH
Q ss_conf 87766489815883545751-32322789958947576378999910003899876950279564--4588104666430
Q 001561 445 GFESLMVLALGNCGLKGHIP-VWLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLT--GEIPKSLTELKSL 521 (1052)
Q Consensus 445 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~ip~~l~~l~~L 521 (1052)
.+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77888888677875754357553257546127844899754227645500754310110146442256677645557878
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC--------CCCCCCCCCCEECCCCCEE
Q ss_conf 02689999998778855202014567986778889999834410375011599--------3432543455350238364
Q 001561 522 ISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIP--------PEIGQLKHLHVLDLSRNNI 593 (1052)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l 593 (1052)
..++........... ........++.+++++|++++..+ ..++++++|+.|+|++|++
T Consensus 483 ~~L~Ls~N~l~~i~~--------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 483 TILDLSNNNIANIND--------------DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp CEEECCSSCCCCCCT--------------TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCCCCH--------------HHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCC
T ss_conf 999899998776794--------------463455346888588997300000004677414233799888888999978
Q ss_pred EECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 20179774255676764377885789997123373566704601552424799998--557788876458988757
Q 001561 594 TGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSVANNHLQGTIPTGG--QFYSFPNSSFEGNPGLCG 667 (1052)
Q Consensus 594 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~ 667 (1052)
+...+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++.+|... .+.++..+.+.|||+.|.
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 8779777346667522389999777679768378988888989999687059668301146657798318970257
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=493.29 Aligned_cols=498 Identities=23% Similarity=0.288 Sum_probs=306.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCC---------CCCCCCCCCCCEE---EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 8998889999999951899988---------7786799998302---113619999999889389998048997434772
Q 001561 37 SCDPSDLLALKEFAGNLTNGSI---------ITSWSNESMCCQW---DGVVCGHGSTGSNAGRVTMLILPRKGLKGIIPR 104 (1052)
Q Consensus 37 ~~~~~~~~aL~~~~~~~~~~~~---------~~sw~~~~~~c~w---~gv~C~~~~~~~~~~~v~~l~l~~~~l~~~~~~ 104 (1052)
.....|+.||.+++.+++...+ .++|+.+++||.| .||+|+. .++|+.|+|.++++.|.+|+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~------~~~V~~L~L~~~~l~g~lp~ 99 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS------NGRVTGLSLEGFGASGRVPD 99 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT------TCCEEEEECTTSCCEEEECG
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC------CCCEEEEEECCCCCCCCCCH
T ss_conf 667788999999999758997454776776578877799800014779848767------89788998427665772885
Q ss_pred CCCCCCCCCEEECCCCCC------CC------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCC
Q ss_conf 222886789686679978------99------896025588876488346772448544323466-77118980576567
Q 001561 105 SLGHLNQLKLLDLSCNHL------EG------VVPVELSNLKQLEVLDLSHNMLSGPVSGMLAGL-NLIQSLNVSSNSFN 171 (1052)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~i------~~------~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~ 171 (1052)
+++++++|+.|+|++|++ .+ .+|... +.+|+ +++++|.+.+.++..+..+ ..+..+++....+.
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred HHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 78568451189876885123774334532356733888--88887-6577755411706667788777764275546541
Q ss_pred CCCCCCCCCCCCCEEEE--CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC------------------CCCCCC--CCC
Q ss_conf 74333345775219981--28735786304554114434244356743333------------------456688--999
Q 001561 172 GSLFELGEFSNLAVFNI--SNNSFTGKLNSRIWSASKEIQILDLSMNHFMG------------------SLQGLD--HSP 229 (1052)
Q Consensus 172 ~~~~~l~~l~~L~~L~L--s~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~------------------~~~~l~--~~~ 229 (1052)
. .....++.+.+ .+|.+++ +|.. +..+++|++|++++|.+++ +|..+. +++
T Consensus 177 ~-----~~~~~l~~l~l~~~~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~ 249 (636)
T 4eco_A 177 K-----SSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249 (636)
T ss_dssp C-----CCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred C-----CCCCCHHHHHHCCCCCCCCC-CCHH-HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCC
T ss_conf 0-----13344213001013677750-7877-725647878988688236642322122222100102486322004468
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-HHHHHHCCC------CCCCEEECCCCCCCCCCCC--CCCC
Q ss_conf 99889831666999898121289998599833676-773-034521289------9885998269867898730--0058
Q 001561 230 SLKQLHVDNNLLGGDLPDSLYSMSSLQHVSLSVNN-FSG-QLSEKISNL------TSLRHLIIFGNQFSGKLPN--VLGN 299 (1052)
Q Consensus 230 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~l~~ 299 (1052)
+|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .+++
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCC
T ss_conf 788898048857762838883499978897847988766533578875430465788888989799377-6676555425
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 444451024677545877843335788849990286223757756656876-65641355446699993113887--666
Q 001561 300 LTQLEFFVAHSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSS-LCTLDLATNHFSGPLPNSLSDCH--DLK 376 (1052)
Q Consensus 300 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~--~L~ 376 (1052)
+++|+.|++++|.+.|.+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+. +|+
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCC
T ss_conf 7888989690880705166-6478898898989899403-033756510236868985298275-446655333457668
Q ss_pred EEECCCCCCCCCCCHHHC-------CCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCC-CCCC--
Q ss_conf 453245324345831001-------677675785258867777664000013766526742456567668955-4587--
Q 001561 377 ILSLAKNELSGQVPESFG-------KLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPEN-VGGF-- 446 (1052)
Q Consensus 377 ~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-l~~l-- 446 (1052)
.|++++|.+++..|..+. .+++|+.|++++|.+..++. ..+..+++|++|++++|.+. .+|.. +...
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~ 482 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK--ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT--HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCH--HHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCC
T ss_conf 897748857886524420022011258988889772796686787--88715898898989799788-739788404400
Q ss_pred -----CCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCHHHHH
Q ss_conf -----7664898158835457513232--278995894757637899991000389987695027956445881046664
Q 001561 447 -----ESLMVLALGNCGLKGHIPVWLL--RCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGEIPKSLTELK 519 (1052)
Q Consensus 447 -----~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 519 (1052)
++|+.|++++|.++ .+|..+. .+++|+.|++++|++++ +|..++.+++|+.|++++|+.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~------------ 548 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD------------ 548 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBC------------
T ss_pred CCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCC------------
T ss_conf 1221477338989699388-16854534458876989898998877-682353088878788988866------------
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCC
Q ss_conf 30026899999987788552020145679867788899998344103750115993432543455350238364201797
Q 001561 520 SLISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTIPS 599 (1052)
Q Consensus 520 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 599 (1052)
+++|++.+.+|..++.+++|+.|+|++|++ +.+|.
T Consensus 549 --------------------------------------------ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 549 --------------------------------------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp --------------------------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred --------------------------------------------CCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCH
T ss_conf --------------------------------------------566731212737785699878898989947-70597
Q ss_pred CCCCCCCCCEEECCCCCCC
Q ss_conf 7425567676437788578
Q 001561 600 SISEIRNLEVLDLSSNDLH 618 (1052)
Q Consensus 600 ~~~~l~~L~~L~Ls~N~l~ 618 (1052)
.+. ++|+.|++++|++.
T Consensus 584 ~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCC--TTCCEEECCSCTTC
T ss_pred HHH--CCCCEEECCCCCCC
T ss_conf 683--86789987699876
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=483.41 Aligned_cols=509 Identities=20% Similarity=0.239 Sum_probs=338.5
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 8893899980489974347722228867896866799789989-602558887648834677244854432346677118
Q 001561 84 NAGRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVV-PVELSNLKQLEVLDLSHNMLSGPVSGMLAGLNLIQS 162 (1052)
Q Consensus 84 ~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 162 (1052)
.+.+++.|+|.++.+++..+.++..+++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+.+..|..|.++.+|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCCCC-CC--CCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC-CCCCCC--CCCCEEEC
Q ss_conf 980576567743-33--3457752199812873578630455411443424435674333345-668899--99988983
Q 001561 163 LNVSSNSFNGSL-FE--LGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNHFMGSL-QGLDHS--PSLKQLHV 236 (1052)
Q Consensus 163 L~L~~N~l~~~~-~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~l~~~--~~L~~L~L 236 (1052)
|+|++|.+.+.. .. +..+++|++|++++|.+.+..+...+..+++|+.|++++|.+.+.. ..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred CCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCHHHHHHCCC---CCCCEEECCCC---------CCCCCCCCCCC
Q ss_conf 166699989812128999------8599833676773034521289---98859982698---------67898730005
Q 001561 237 DNNLLGGDLPDSLYSMSS------LQHVSLSVNNFSGQLSEKISNL---TSLRHLIIFGN---------QFSGKLPNVLG 298 (1052)
Q Consensus 237 ~~N~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~N---------~l~~~~p~~l~ 298 (1052)
++|.+.+..+..+..+.+ |++|++++|.+++..+..+... .+++.|.+..+ .+.+..+..|.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 78866655455332237722357400796578868656778887642744100112121223466444566889855652
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84--4445102467754587784333578884999028622375775665687665641355446699993113887666
Q 001561 299 NL--TQLEFFVAHSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSGPLPNSLSDCHDLK 376 (1052)
Q Consensus 299 ~l--~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 376 (1052)
.+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|.++++|++|+|++|.+++..|..+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 55547861898979945515863452589999998979818987968836888999898989978851878846899999
Q ss_pred EEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 45324532434583100167767578525886777766400001376652674245656766895545877664898158
Q 001561 377 ILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPENVGGFESLMVLALGN 456 (1052)
Q Consensus 377 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 456 (1052)
.|++++|.+++..+..|..+++|+.|++++|.+..++. +++|+.|++++|.+. .+|.. ..+++.|++++
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-------~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~ 410 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-------IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSE 410 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-------CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCS
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC-------CCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCC
T ss_conf 89898998776286661378889998898997786168-------898232005899723-14554---55431221456
Q ss_pred CCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCC-----CCHHHHHHHCCCCCCCC
Q ss_conf 8354575-13232278995894757637899991-00038998769502795644588-----10466643002689999
Q 001561 457 CGLKGHI-PVWLLRCKKLQVLDLSWNHFDGNIPP-WIGQMENLFYLDFSNNTLTGEIP-----KSLTELKSLISSNCTSS 529 (1052)
Q Consensus 457 n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ip-----~~l~~l~~L~~~~~~~~ 529 (1052)
|++.+.. +..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+++..+ ..|..+++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L-------- 482 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL-------- 482 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE--------
T ss_pred CCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC--------
T ss_conf 753457556665127766666677871255554333566873100247777364410135535554475536--------
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCE
Q ss_conf 99877885520201456798677888999983441037501159934325434553502383642017977425567676
Q 001561 530 NPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTIPSSISEIRNLEV 609 (1052)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 609 (1052)
+.++|++|++++..|..+..+++|+.|+|++|++++..|..+. ++|+.
T Consensus 483 ------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~ 530 (844)
T 3j0a_A 483 ------------------------------QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI 530 (844)
T ss_dssp ------------------------------ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred ------------------------------CEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCE
T ss_conf ------------------------------5777889856553955704501221569999978745710110--04558
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 4377885789997123373566704601552424799
Q 001561 610 LDLSSNDLHGSIPGSFEKLTFLSKFSVANNHLQGTIP 646 (1052)
Q Consensus 610 L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p 646 (1052)
|+|++|++++.+|..+ ..|..+++++|.+....+
T Consensus 531 L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 531 LDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred EECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCC
T ss_conf 8898884788896683---776889931997025366
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=480.33 Aligned_cols=536 Identities=19% Similarity=0.199 Sum_probs=281.9
Q ss_pred CCCCCCCCE--EEEEEECCCCCC----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 679999830--211361999999----98893899980489974347722228867896866799789989602558887
Q 001561 62 WSNESMCCQ--WDGVVCGHGSTG----SNAGRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQ 135 (1052)
Q Consensus 62 w~~~~~~c~--w~gv~C~~~~~~----~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 135 (1052)
|....+.|. +..|.|...... ..+..++.|++.++.+++..+.++..+++|++|+|++|+++++.|..|.++++
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCC
T ss_conf 45686012368723777779806286778986758981587347179667256766528978898355248511368433
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 64883467724485443234667711898057656774-33334577521998128735786304554114434244356
Q 001561 136 LEVLDLSHNMLSGPVSGMLAGLNLIQSLNVSSNSFNGS-LFELGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLS 214 (1052)
Q Consensus 136 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ls 214 (1052)
|++|+|++|.+.+..+..++.+++|++|++++|.+++. +..+..+++|++|++++|++.+...
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~---------------- 146 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL---------------- 146 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC----------------
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCC----------------
T ss_conf 6764488985654586552344215376521267665781012237822389887983411476----------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC--EEECCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCC
Q ss_conf 743333456688999998898316669998981212899985--998336767730345212899885998269867898
Q 001561 215 MNHFMGSLQGLDHSPSLKQLHVDNNLLGGDLPDSLYSMSSLQ--HVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFSGK 292 (1052)
Q Consensus 215 ~n~l~~~~~~l~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (1052)
+.+..+++|+.|++++|.+++..+..+..+++|+ .|++++|.+++..|..+. ..+|+.|++++|. .
T Consensus 147 --------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~ 214 (606)
T 3t6q_A 147 --------PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---N 214 (606)
T ss_dssp --------CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---C
T ss_pred --------CCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCH---H
T ss_conf --------545687656877765684455496563322156403896679814754866730-0100135567726---6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 7300058444451024677545-----87784333578--8849990286223757756656876656413554466999
Q 001561 293 LPNVLGNLTQLEFFVAHSNSFS-----GPLPLSLSLCS--KLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSGPL 365 (1052)
Q Consensus 293 ~p~~l~~l~~L~~L~l~~n~l~-----~~~p~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 365 (1052)
.+..+..+.++....+..+.+. ...+..+..+. +|+.|++++|.+++..+..|..+++|++|++++|.++ .+
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l 293 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred HHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CC
T ss_conf 77776513356442200201102641226866743032075059994457658557777445667888956288267-77
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC-CCCCCHHHCCCCCCCEEECCCCCCCCCC--CCC
Q ss_conf 9311388766645324532434583100167767578525886777-7664000013766526742456567668--955
Q 001561 366 PNSLSDCHDLKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNH-LSGTLSVLQQCKNLTTLILTKNFVGEEI--PEN 442 (1052)
Q Consensus 366 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~ 442 (1052)
|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.. ++. ..+..+++|++|++++|.+.... +..
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT--GCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS--STTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCH--HHHHCCCCCCEEECCCCCCCCCCCCCHH
T ss_conf 82141654688897716876867602330157689888989974443462--4550667589887889966645675221
Q ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 45877664898158835457513232278995894757637899991-00038998769502795644588104666430
Q 001561 443 VGGFESLMVLALGNCGLKGHIPVWLLRCKKLQVLDLSWNHFDGNIPP-WIGQMENLFYLDFSNNTLTGEIPKSLTELKSL 521 (1052)
Q Consensus 443 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 521 (1052)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|. .+..+++|+.|++++|.+++..|..+..+++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCC
T ss_conf 05678889898989967757888734774577687888867775652124176558889898985577687787378878
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCC---CCCCCCCCCCCCEECCCCCEEEECCC
Q ss_conf 026899999987788552020145679867788899998344103750115---99343254345535023836420179
Q 001561 522 ISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGT---IPPEIGQLKHLHVLDLSRNNITGTIP 598 (1052)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p 598 (1052)
+.+++++|++.+. .+..+..+++|+.|++++|++++..|
T Consensus 452 --------------------------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 452 --------------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp --------------------------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred --------------------------------------CEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf --------------------------------------889898998885434543124048876688799996670686
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 77425567676437788578999712337356670460155242479999-8557788876458988757
Q 001561 599 SSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSVANNHLQGTIPTG-GQFYSFPNSSFEGNPGLCG 667 (1052)
Q Consensus 599 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~ 667 (1052)
..+..+++|++|++++|++++..|..+..++.| .+++++|++++.+|.. ..+.++....+.|||+.|.
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 463265678889898980686896684756651-898768941426876625677878896779986166
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=477.06 Aligned_cols=520 Identities=20% Similarity=0.233 Sum_probs=326.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CC--CEE------------EEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 88899888999999995189998877867999-----98--302------------113619999999889389998048
Q 001561 35 FQSCDPSDLLALKEFAGNLTNGSIITSWSNES-----MC--CQW------------DGVVCGHGSTGSNAGRVTMLILPR 95 (1052)
Q Consensus 35 ~~~~~~~~~~aL~~~~~~~~~~~~~~sw~~~~-----~~--c~w------------~gv~C~~~~~~~~~~~v~~l~l~~ 95 (1052)
.+++..+|++||++||.++.+. +|+... +| |.| .||+|+. .++|+.|+|.+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~------~~~V~~L~Ls~ 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN------NGRVTGLSLAG 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT------TSCEEEEECTT
T ss_pred CCCCCHHHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC------CCCEEEEECCC
T ss_conf 4546317899999999973799----9886898653367764034666545335768428369------99798998724
Q ss_pred CCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCC----CCCC--EEECC----------CCCCCCCC--------
Q ss_conf 9974347722228867896866-7997899896025588----8764--88346----------77244854--------
Q 001561 96 KGLKGIIPRSLGHLNQLKLLDL-SCNHLEGVVPVELSNL----KQLE--VLDLS----------HNMLSGPV-------- 150 (1052)
Q Consensus 96 ~~l~~~~~~~l~~l~~L~~L~L-s~n~i~~~~~~~l~~l----~~L~--~L~Ls----------~N~l~~~~-------- 150 (1052)
+++.|.+|++++++++|+.|+| ++|.+.|..+...... ...+ .+... ...+....
T Consensus 333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 78999485577415556284301256335666422234454411567888777666654203751115678787765073
Q ss_pred ---CCCCCCCCCCCEEECCC--CCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCC-CCCC
Q ss_conf ---43234667711898057--6567743333457752199812873578-630455411443424435674333-3456
Q 001561 151 ---SGMLAGLNLIQSLNVSS--NSFNGSLFELGEFSNLAVFNISNNSFTG-KLNSRIWSASKEIQILDLSMNHFM-GSLQ 223 (1052)
Q Consensus 151 ---~~~~~~l~~L~~L~L~~--N~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~ls~n~l~-~~~~ 223 (1052)
+........++.+.+.. |.+++.+..++.+++|+.|+|++|.+++ .++..+ +..+.|.+. .+|.
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---------~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW---------EDANSDYAKQYENE 483 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC---------SCTTSHHHHHHTTS
T ss_pred CCCCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCC---------CCCCCCCCCCCCCH
T ss_conf 324322235442312040566676152118875699987897968867887465322---------33222222445874
Q ss_pred CCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-HHHHHHCCCC-------CCCEEECCCCCCCCC
Q ss_conf 688--99999889831666999898121289998599833676-773-0345212899-------885998269867898
Q 001561 224 GLD--HSPSLKQLHVDNNLLGGDLPDSLYSMSSLQHVSLSVNN-FSG-QLSEKISNLT-------SLRHLIIFGNQFSGK 292 (1052)
Q Consensus 224 ~l~--~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~ 292 (1052)
.+. .+++|+.|+|++|.+.+.+|..+..+++|++|++++|+ +++ .+|..+..++ +|++|++++|+++ .
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ 562 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-E 562 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-B
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-C
T ss_conf 440255999778987189887527387737999899989689876566461778752330155688319982289477-6
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCC
Q ss_conf 730--0058444451024677545877843335788849990286223757756656876-6564135544669999311
Q 001561 293 LPN--VLGNLTQLEFFVAHSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSS-LCTLDLATNHFSGPLPNSL 369 (1052)
Q Consensus 293 ~p~--~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~l 369 (1052)
+|. .++++++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|+|++|.++ .+|..+
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred CCCHHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHH
T ss_conf 187235515898898989799825-621-2247985007987187125-035877525114989998499787-476445
Q ss_pred CCCCC--CCEEECCCCCCCCCCCHHH---C--CCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 38876--6645324532434583100---1--677675785258867777664000013766526742456567668955
Q 001561 370 SDCHD--LKILSLAKNELSGQVPESF---G--KLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPEN 442 (1052)
Q Consensus 370 ~~l~~--L~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 442 (1052)
..+.. |+.|++++|++++.+|... . .+++|+.|++++|.+..++. ..+..+++|+.|++++|.+. .+|..
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~--~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT--ELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH--HHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCH--HHHCCCCCCCEEECCCCCCC-CCCHH
T ss_conf 2255677788977088478864320000001357976889831996886597--88713898899989899688-54967
Q ss_pred CCC--------CCCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC
Q ss_conf 458--------77664898158835457513232--27899589475763789999100038998769502795644588
Q 001561 443 VGG--------FESLMVLALGNCGLKGHIPVWLL--RCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGEIP 512 (1052)
Q Consensus 443 l~~--------l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip 512 (1052)
+.. +++|+.|++++|+++ .+|..+. .+++|+.|+|++|.+++ +|..++.+++|+.|++++|..
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~----- 788 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD----- 788 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC-----
T ss_pred HHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCCC-----
T ss_conf 84555334321487158988899786-65277624427986989908997876-105661599988998879977-----
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCE
Q ss_conf 10466643002689999998778855202014567986778889999834410375011599343254345535023836
Q 001561 513 KSLTELKSLISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNN 592 (1052)
Q Consensus 513 ~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 592 (1052)
+++|++.+.+|..++.+++|+.|+|++|+
T Consensus 789 ---------------------------------------------------ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 789 ---------------------------------------------------AEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp ---------------------------------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred ---------------------------------------------------CCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf ---------------------------------------------------66563244486888369987889887997
Q ss_pred EEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 42017977425567676437788578999712337356670460155242
Q 001561 593 ITGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSVANNHLQ 642 (1052)
Q Consensus 593 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~ 642 (1052)
+ +.+|..+. ++|+.|+|++|++....+..++....+..+.+.+|.+.
T Consensus 818 L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 818 I-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp C-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred C-CCCCHHHC--CCCCEEECCCCCCCCCCHHHCCCCCCCHHEEECCCCCC
T ss_conf 8-74087662--87788999799888117677256542311034688865
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=474.69 Aligned_cols=498 Identities=22% Similarity=0.192 Sum_probs=198.4
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 93899980489974347722228867896866799789989602558887648834677244854432346677118980
Q 001561 86 GRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQLEVLDLSHNMLSGPVSGMLAGLNLIQSLNV 165 (1052)
Q Consensus 86 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 165 (1052)
.+++.|++.++.+.+..+.+|..+++|++|+|++|++++..|..|+.+++|++|++++|.+++..+..+..+++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred CCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEEC
T ss_conf 66528978898355248511368433676448898565458655234421537652126766578101223782238988
Q ss_pred CCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCC--EEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 576567743-33345775219981287357863045541144342--443567433334566889999988983166699
Q 001561 166 SSNSFNGSL-FELGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQ--ILDLSMNHFMGSLQGLDHSPSLKQLHVDNNLLG 242 (1052)
Q Consensus 166 ~~N~l~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~--~L~ls~n~l~~~~~~l~~~~~L~~L~L~~N~l~ 242 (1052)
++|.+.+.. ..+..+++|++|++++|.++ .++...+..+++|+ .|++++|.+.+.++......+|+.|++++|.
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~-- 213 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ-- 213 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS--
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCH--
T ss_conf 798341147654568765687776568445-54965633221564038966798147548667300100135567726--
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 98981212899985998336767730345212899885998269867898730005844--4451024677545877843
Q 001561 243 GDLPDSLYSMSSLQHVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFSGKLPNVLGNLT--QLEFFVAHSNSFSGPLPLS 320 (1052)
Q Consensus 243 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p~~ 320 (1052)
..+..+..+.++....+....+.+. ......+..+..+. +++.+++++|.+.+..+..
T Consensus 214 -~~~~~~~~l~~~~l~~l~~~~~~~~-------------------~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 214 -NLLVIFKGLKNSTIQSLWLGTFEDM-------------------DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp -CHHHHHHHTTTCEEEEEECCCCTTS-------------------CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred -HHHHHHHHCCCCCHHHEECHHHCCC-------------------CCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHH
T ss_conf -6777765133564422002011026-------------------41226866743032075059994457658557777
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HHCCCCCC
Q ss_conf 33578884999028622375775665687665641355446699993113887666453245324345831-00167767
Q 001561 321 LSLCSKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSGPLPNSLSDCHDLKILSLAKNELSGQVPE-SFGKLTSL 399 (1052)
Q Consensus 321 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L 399 (1052)
+..+++|++|++++|.++ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.++. .+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCC
T ss_conf 445667888956288267-7782141654688897716876867602330157689888989974443462455066758
Q ss_pred CEEECCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEEC
Q ss_conf 578525886777766400001376652674245656766895545877664898158835457513-2322789958947
Q 001561 400 LFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPENVGGFESLMVLALGNCGLKGHIPV-WLLRCKKLQVLDL 478 (1052)
Q Consensus 400 ~~L~L~~N~l~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L 478 (1052)
++|++++|.+..+......+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 98878899666456752210567888989898996775788873477457768788886777565212417655888989
Q ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 57637899991000389987695027956445---881046664300268999999877885520201456798677888
Q 001561 479 SWNHFDGNIPPWIGQMENLFYLDFSNNTLTGE---IPKSLTELKSLISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQA 555 (1052)
Q Consensus 479 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 555 (1052)
++|.+.+..|..++.+++|++|++++|.+++. .+..+..+++|
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L---------------------------------- 478 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL---------------------------------- 478 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC----------------------------------
T ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCC----------------------------------
T ss_conf 8985577687787378878889898998885434543124048876----------------------------------
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99998344103750115993432543455350238364201797742556767643778857899971233735667046
Q 001561 556 SSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFS 635 (1052)
Q Consensus 556 ~~~~~~l~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 635 (1052)
+.+++++|++++..|..++.+++|+.|+|++|++++..|..+..+++| +|++++|++++..|..+..++.|+.++
T Consensus 479 ----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 479 ----EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp ----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred ----CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf ----688799996670686463265678889898980686896684756651-898768941426876625677878896
Q ss_pred ECCCCCCCCCC
Q ss_conf 01552424799
Q 001561 636 VANNHLQGTIP 646 (1052)
Q Consensus 636 l~~N~l~~~~p 646 (1052)
+++|.+.+..+
T Consensus 554 l~~N~~~c~c~ 564 (606)
T 3t6q_A 554 LRQNPLDCTCS 564 (606)
T ss_dssp CTTCCEECSGG
T ss_pred CCCCCCCCCCC
T ss_conf 77998616677
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=472.35 Aligned_cols=529 Identities=21% Similarity=0.227 Sum_probs=244.0
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 93899980489974347722228867896866799789989602558887648834677244854432346677118980
Q 001561 86 GRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQLEVLDLSHNMLSGPVSGMLAGLNLIQSLNV 165 (1052)
Q Consensus 86 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 165 (1052)
.+++.|++.++.+++..+..++.+++|++|+|++|+++++.+..|..+++|++|+|++|.+.+.++..|..+++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 76758878899648569778740667688889998567568545303888898989899668539667415678888989
Q ss_pred CCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCHHH-HHCCCCCCEEECCCCCCCCCCCC-CCCC--------------
Q ss_conf 576567743-333457752199812873578630455-41144342443567433334566-8899--------------
Q 001561 166 SSNSFNGSL-FELGEFSNLAVFNISNNSFTGKLNSRI-WSASKEIQILDLSMNHFMGSLQG-LDHS-------------- 228 (1052)
Q Consensus 166 ~~N~l~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~-l~~~-------------- 228 (1052)
++|.+.+.+ ..+..+++|++|++++|.+++..+..+ +..+++|+.|++++|.+.+.++. +..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89952466721112455677797458843652978862446663217988898256558155532234455430566468
Q ss_pred -------------CCCCEEECCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC
Q ss_conf -------------99988983166699989812128999--859983367677303452128998859982698678987
Q 001561 229 -------------PSLKQLHVDNNLLGGDLPDSLYSMSS--LQHVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFSGKL 293 (1052)
Q Consensus 229 -------------~~L~~L~L~~N~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 293 (1052)
++|+.|++++|.+.+..+..+..+.. |++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 05677787775315100887457743646866751467677888778788767568021167410568557788567658
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-----CCC----CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 3000584444510246775458-----778----4333578884999028622375775665687665641355446699
Q 001561 294 PNVLGNLTQLEFFVAHSNSFSG-----PLP----LSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSGP 364 (1052)
Q Consensus 294 p~~l~~l~~L~~L~l~~n~l~~-----~~p----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 364 (1052)
|..+..+++|+.|++++|...+ .+| ..+..+++|+.|++++|.+.+..+..|.++++|++|++++|.++..
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred HHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHH
T ss_conf 65626788855773633132133333554543865624677788887989826878855740656872898879801443
Q ss_pred --CCCCCCCC--CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC-CCCCCHHHCCCCCCCEEECCCCCCCCCC
Q ss_conf --99311388--766645324532434583100167767578525886777-7664000013766526742456567668
Q 001561 365 --LPNSLSDC--HDLKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNH-LSGTLSVLQQCKNLTTLILTKNFVGEEI 439 (1052)
Q Consensus 365 --~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 439 (1052)
....+..+ ++|+.|++++|++++..|..|..+++|+.|++++|.+.. ++. ..+..+++|++|++++|.+....
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS--GGGTTCTTCCEEECCSCSEEECC
T ss_pred HCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCCEEECCCCCCCEEC
T ss_conf 2353220245568676688999977767754420778888886778757543575--53257546127844899754227
Q ss_pred CCCCCCCCCCCEEECCCCCCC--CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCHHH
Q ss_conf 955458776648981588354--575132322789958947576378999910003899876950279564458810466
Q 001561 440 PENVGGFESLMVLALGNCGLK--GHIPVWLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGEIPKSLTE 517 (1052)
Q Consensus 440 ~~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~ 517 (1052)
+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..|..+.++++|++|++++|.+++..+..+..
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred HHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 64550075431011014644225667764555787899989999877679446345534688858899730000000467
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEECC
Q ss_conf 64300268999999877885520201456798677888999983441037501159934325434553502383642017
Q 001561 518 LKSLISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTI 597 (1052)
Q Consensus 518 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 597 (1052)
. ..........++.+++++|+++...+..|+++++|+.|+|++|++++..
T Consensus 527 ~------------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 527 G------------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp S------------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred C------------------------------CCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 7------------------------------4142337998888889999788779777346667522389999777679
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCC
Q ss_conf 97742556767643778857899971233-73566704601552424799
Q 001561 598 PSSISEIRNLEVLDLSSNDLHGSIPGSFE-KLTFLSKFSVANNHLQGTIP 646 (1052)
Q Consensus 598 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~l~l~~N~l~~~~p 646 (1052)
+..|..+++|+.|++++|++++..|..+. .+++|+.+++++|.+...-+
T Consensus 577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 76837898888898999968705966830114665779831897025776
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=464.54 Aligned_cols=531 Identities=20% Similarity=0.204 Sum_probs=362.7
Q ss_pred CCCEEE----EEEECCCCCC----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 983021----1361999999----98893899980489974347722228867896866799789989602558887648
Q 001561 67 MCCQWD----GVVCGHGSTG----SNAGRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQLEV 138 (1052)
Q Consensus 67 ~~c~w~----gv~C~~~~~~----~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 138 (1052)
+.|.|. .|.|...... ..+.+++.|++.++.+++..+..+.++++|++|+|++|+++++.|..|.++++|++
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCEECCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCE
T ss_conf 77532178970574688845189888887678878889757737545557766748868877366439777306010688
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf 834677244854432346677118980576567743-3334577521998128735786304554114434244356743
Q 001561 139 LDLSHNMLSGPVSGMLAGLNLIQSLNVSSNSFNGSL-FELGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNH 217 (1052)
Q Consensus 139 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 217 (1052)
|+|++|.+.+..|..|+++.+|++|++++|.+.+.+ ..++.+++|++|++++|.+.+......+..+++|+.|++++|.
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCC
T ss_conf 67879856304852207865378887037755544511348988779896878852325306867326777788766885
Q ss_pred CCCCCC-CCCCCCC----CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CHHHHHHCCCCCCCEEECCCCCCCC
Q ss_conf 333456-6889999----988983166699989812128999859983367677-3034521289988599826986789
Q 001561 218 FMGSLQ-GLDHSPS----LKQLHVDNNLLGGDLPDSLYSMSSLQHVSLSVNNFS-GQLSEKISNLTSLRHLIIFGNQFSG 291 (1052)
Q Consensus 218 l~~~~~-~l~~~~~----L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~ 291 (1052)
+++.+. .+..+++ +..|++++|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+..
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred CEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 3105733412120342002430046897532571105676-043352467856166778886026656523141111036
Q ss_pred ------CCCCCCCCCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf ------8730005844--4451024-677545877843335788849990286223757756656876656413554466
Q 001561 292 ------KLPNVLGNLT--QLEFFVA-HSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFS 362 (1052)
Q Consensus 292 ------~~p~~l~~l~--~L~~L~l-~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 362 (1052)
..+..+..+. .++.+.+ ..|.+.+..|. +..+++|+.|++++|.+.... .+..+++|+.|++++|.+
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-
T ss_pred CCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHHHH--HCCCCCCCCEEECCCCCC-
T ss_conf 7741026817766665434745012366555543222-354887898771476604435--433401177897646667-
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 99993113887666453245324345831001677675785258867777664000013766526742456567668955
Q 001561 363 GPLPNSLSDCHDLKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPEN 442 (1052)
Q Consensus 363 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 442 (1052)
+.+| .+ .+++|+.|++++|...+.. .+..+++|+.|++++|.+..+......+..+++|++|++++|.+.. +|..
T Consensus 320 ~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~ 394 (606)
T 3vq2_A 320 KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394 (606)
T ss_dssp SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred CCCC-CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHH
T ss_conf 6546-67-8875564454478685310--0024898887977587368775201221467755486788995300-0554
Q ss_pred CCCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC-CCCCHHHHHH
Q ss_conf 4587766489815883545751-3232278995894757637899991000389987695027956445-8810466643
Q 001561 443 VGGFESLMVLALGNCGLKGHIP-VWLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGE-IPKSLTELKS 520 (1052)
Q Consensus 443 l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~ 520 (1052)
+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+++. +|..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCC
T ss_conf 06888889658988705875376456462137889896897874335553477878989898983798546776045788
Q ss_pred HCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCC
Q ss_conf 00268999999877885520201456798677888999983441037501159934325434553502383642017977
Q 001561 521 LISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTIPSS 600 (1052)
Q Consensus 521 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 600 (1052)
| +.+++++|++++..|..++.+++|+.|+|++|++++.+|..
T Consensus 475 L--------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 475 L--------------------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp C--------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred C--------------------------------------CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 9--------------------------------------98989888577648656154646898989899578748777
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCC
Q ss_conf 42556767643778857899971233735-66704601552424799
Q 001561 601 ISEIRNLEVLDLSSNDLHGSIPGSFEKLT-FLSKFSVANNHLQGTIP 646 (1052)
Q Consensus 601 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~l~l~~N~l~~~~p 646 (1052)
+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|.+....+
T Consensus 517 ~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 068876898889898376-6687675210217488762898664776
Done!