Query 001562
Match_columns 1052
No_of_seqs 707 out of 7066
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 17:07:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001562.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_859-862//hhsearch_pdb/001562hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 628.7 43.4 618 42-690 6-745 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 497.1 36.3 553 121-689 75-721 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 474.5 39.2 579 76-690 2-627 (680)
4 4eco_A Uncharacterized protein 1.0 1 1 470.8 29.1 508 44-690 26-631 (636)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 463.7 31.8 506 41-689 262-870 (876)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 460.2 36.5 509 111-672 36-567 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 453.4 33.9 505 124-689 34-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 442.8 29.0 495 123-689 32-562 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 439.5 41.3 526 70-672 2-567 (606)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 432.4 40.1 513 121-690 22-565 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=628.74 Aligned_cols=618 Identities=30% Similarity=0.428 Sum_probs=455.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC---CC--
Q ss_conf 8999911399999999865679988656768999999877037306999648999824688999987643432---43--
Q 001562 42 AESVPTTDSASLLSFKASISRDPSNLLATWNSSTDHCTWHGVTCDHFTGRVTALRITGKATPWPSKSSVISGT---LS-- 116 (1052)
Q Consensus 42 ~~~~~~~d~~~ll~~k~~~~~~~~~~~~~W~~~~~~C~w~gV~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~---l~-- 116 (1052)
+++..++|++||++||+++. ||. .+++|+.++|||.|.||+|+ +++|+.+++.+.. +.|. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~---------l~g~~~~l~~~ 72 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKP---------LNVGFSAVSSS 72 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSC---------CCEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC-CCC-CCCCCCCCCCCCCCCCEEEC--CCCEEEEECCCCC---------CCCCCCCCCHH
T ss_conf 56687899999999996678-962-14687899987688413878--9927898778998---------67755766965
Q ss_pred ---------------------HHHHCCCCCCEEEECCCCCEECCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCC
Q ss_conf ---------------------2110788878557137870220898--73687876489823750333479324-37676
Q 001562 117 ---------------------ASIAKLTELRTLSVPHNSFSGEIPA--GVGELRLLEVLELQGNNFSGKIPYQM-SNLER 172 (1052)
Q Consensus 117 ---------------------~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~ 172 (1052)
+.++.+++|++|+|++|.+.|.+|. .++.+++|++|+|++|.+.+.+|..+ .++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 73168022467868886787033245788998989898578707896787278899989896882677479778563889
Q ss_pred CCEEECCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 774742234263358822---33999986798568744675566787546777779824786787778123798999989
Q 001562 173 LRVLNLSFNSFSGEVPRG---LIGNGELSVIDMSSNRLSGGLAIDSSSECEFLTYLKLSDNFLTESIPKEIGKCRNLKNL 249 (1052)
Q Consensus 173 L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 249 (1052)
|++|++++|.+++..|.. +.++++|+.|++++|++.+..+. ..+++|++|++++|.+++.+|. ++.+++|++|
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L 228 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred CCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEE
T ss_conf 99898979835885871556643589889898978803465784---5478689898928827887711-1269999989
Q ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-----------CCCCCC
Q ss_conf 757982544434211069998799942798977777011037999804315675556678877-----------865444
Q 001562 250 LLDGNILEGSIPKEIGTISELKVLDVSRNSLTDRIPVELADCSKLSVLVLTNIDASLDLDNSR-----------GEFSAF 318 (1052)
Q Consensus 250 ~l~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-----------~~~~~~ 318 (1052)
++++|.+++.+|..++.+++|++|++++|++.+.+|.. .+++|+.|++++|.+....+... -..+.+
T Consensus 229 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp ECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCC
T ss_conf 79488587816577744888898989888665716724--3687898979178557725888884468688998968967
Q ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCC
Q ss_conf 6898622220257828646899786558965-44899742996799945334781220369-998996889967668998
Q 001562 319 DGGVPYELLLSRSLEVLWAPRANLGGRLPDN-WSESCSLKVLNLGQNSLKGAVPKSLGMCR-NLTYLDLSLNNLEGYLPM 396 (1052)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~ 396 (1052)
.+..|..+..+++|+.|++.+|.+.+.+|.. +..+++|+.|++++|.+++.+|..+..++ +|+.|++++|++++.+|.
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCH
T ss_conf 78423677558776677897885257379788724888878848478437623098986322771998627874787676
Q ss_pred CCC---CCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 887---78644672115723457999-86455666677545620013445764551001320036881135567654565
Q 001562 397 QLP---VPCMVYFNVSQNNITGVLPR-FENVSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGD 472 (1052)
Q Consensus 397 ~~~---l~~l~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~~~~~~~~~~~~~ 472 (1052)
.+. ++.|+.+++++|++++.+|. +.....+..+.+.+...... ....+.....+..+++++|.+.+.+|..
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~---- 461 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQE---- 461 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCCSCCCGG----
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCHH----
T ss_conf 66533247761898977846542487775689879898958846685-4677744998898989788154718978----
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 31124640368865059756678897422235888532886675213464658897317774199856861233564246
Q 001562 473 GFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAAGV 552 (1052)
Q Consensus 473 ~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 552 (1052)
...++.+..+.+.+|.++|.+|. .+..++.|+ .|++++|.+.+..... +..+++|+.|++++|++++.+|..+
T Consensus 462 ---~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~--~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 462 ---LMYVKTLETLILDFNDLTGEIPS-GLSNCTNLN--WISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp ---GGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCC--EEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEECCGGG
T ss_pred ---HCCCCCCEEEEECCCCCCCCCCH-HHHCCCCCC--EEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf ---82877732999019951375887-881699899--8975399518968768-8568999989897894337488777
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHH--------------------------------------------------------
Q ss_conf 999877799843884889994312--------------------------------------------------------
Q 001562 553 GKLMKLQRLDLRGNRVSGSLPDEL-------------------------------------------------------- 576 (1052)
Q Consensus 553 ~~l~~L~~L~L~~N~l~~~~p~~~-------------------------------------------------------- 576 (1052)
+.+++|++|++++|.+++.+|..+
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 08898998989888468827957860421223201345421111344432222332221001355632320023211001
Q ss_pred --------------CCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCEECCCCCCCC
Q ss_conf --------------186348588748983698673101288678699858997898885000023321200034885778
Q 001562 577 --------------GKLKFLKWILLGGNNLTGEIPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSG 642 (1052)
Q Consensus 577 --------------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 642 (1052)
..+++|+.|++++|++++.+|..++++++|+.|+|++|++++.+|..++.+++|+.|+|++|++++
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 13310046274334033566579785880155587788414157878486880388789678477789989897880238
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCC
Q ss_conf 777433345535827624686778888664---444322239702457899
Q 001562 643 EIPVSFSTLVNLSALDLSFNNLSGHIPHLQ---HLDCIAFKGNKYLASCPD 690 (1052)
Q Consensus 643 ~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~---~l~~~~~~~n~~~~~~~~ 690 (1052)
.+|..+..+++|+.+++++|+++|.+|... .+....+.|||..|..|-
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l 745 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCC
T ss_conf 688677578878978796881556089960102489777569832108877
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=497.14 Aligned_cols=553 Identities=28% Similarity=0.399 Sum_probs=440.5
Q ss_pred CCCCCCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCC
Q ss_conf 788878557137870220898736878764898237503334793--24376767747422342633588223-399998
Q 001562 121 KLTELRTLSVPHNSFSGEIPAGVGELRLLEVLELQGNNFSGKIPY--QMSNLERLRVLNLSFNSFSGEVPRGL-IGNGEL 197 (1052)
Q Consensus 121 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L 197 (1052)
++++|+.++++.+.+. .+|..++.+++|++|+|++|.+++.+|. .++++++|++|+|++|.+.+.+|..+ .++++|
T Consensus 75 ~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 75 SLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred CCCCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 1680224678688867-870332457889989898985787078967872788999898968826774797785638899
Q ss_pred CEEECCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
Q ss_conf 679856874467556678--754677777982478678777812379899998975798254443421106999879994
Q 001562 198 SVIDMSSNRLSGGLAIDS--SSECEFLTYLKLSDNFLTESIPKEIGKCRNLKNLLLDGNILEGSIPKEIGTISELKVLDV 275 (1052)
Q Consensus 198 ~~L~L~~N~l~~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~L 275 (1052)
+.|++++|++.+..+... +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.+|. ++.+++|++|++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 230 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred CEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEEC
T ss_conf 989897983588587155664358988989897880346578--45478689898928827887711-126999998979
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--------CCCCCCCCCCCCHHHHCC-CCCCEEECCCCCCCCCC
Q ss_conf 279897777701103799980431567555667887--------786544468986222202-57828646899786558
Q 001562 276 SRNSLTDRIPVELADCSKLSVLVLTNIDASLDLDNS--------RGEFSAFDGGVPYELLLS-RSLEVLWAPRANLGGRL 346 (1052)
Q Consensus 276 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~ 346 (1052)
++|++++.+|..+..+++|+.|++++|.+....+.. .-..+.+.+.+|..+... ++|+.|++.+|.+.+.+
T Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 48858781657774488889898988866571672436878989791785577258888844686889989689677842
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCC-CC-CCCEEECCCCCCCCCCCCC-CC
Q ss_conf 965448997429967999453347812-20369998996889967668998887-78-6446721157234579998-64
Q 001562 347 PDNWSESCSLKVLNLGQNSLKGAVPKS-LGMCRNLTYLDLSLNNLEGYLPMQLP-VP-CMVYFNVSQNNITGVLPRF-EN 422 (1052)
Q Consensus 347 p~~~~~~~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~-l~-~l~~l~ls~N~l~~~~p~~-~~ 422 (1052)
|..+..+++|+.|++++|.+.|.+|.. +..+++|+.|++++|++++.+|..+. ++ +|+.+++++|++++..|.. ..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 36775587766778978852573797887248888788484784376230989863227719986278747876766653
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf --556666775456200134457645510013200368811355676545653112464036886505975667889742
Q 001562 423 --VSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGER 500 (1052)
Q Consensus 423 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~ 500 (1052)
...+..+.+.+...... ....+..+..+..+++++|.+.+.+|.. ...++.+..+.+.+|.+++.+|..
T Consensus 391 ~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------l~~l~~L~~L~L~~n~l~~~~p~~- 461 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSS-------LGSLSKLRDLKLWLNMLEGEIPQE- 461 (768)
T ss_dssp STTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGG-------GGGCTTCCEEECCSSCCCSCCCGG-
T ss_pred CCCCCCCEEECCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCHH-------HHCCCCCCEEECCCCCCCCCCCHH-
T ss_conf 3247761898977846542-4877756898798989588466854677-------744998898989788154718978-
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCC
Q ss_conf 22358885328866752134646588973177741998568612335642469998777998438848899943121863
Q 001562 501 ISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAAGVGKLMKLQRLDLRGNRVSGSLPDELGKLK 580 (1052)
Q Consensus 501 ~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 580 (1052)
+..++.|+ .|++++|.+.+..... +..+++|+.|++++|++++.+|..++.+++|++|++++|++++.+|..+..++
T Consensus 462 ~~~l~~L~--~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 462 LMYVKTLE--TLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp GGGCTTCC--EEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred HCCCCCCE--EEEECCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCC
T ss_conf 82877732--9990199513758878-81699899897539951896876885689999898978943374887770889
Q ss_pred CCCEEECCCCCCCCCCCHHH------------------------------------------------------------
Q ss_conf 48588748983698673101------------------------------------------------------------
Q 001562 581 FLKWILLGGNNLTGEIPSQF------------------------------------------------------------ 600 (1052)
Q Consensus 581 ~L~~L~l~~N~l~~~~~~~~------------------------------------------------------------ 600 (1052)
+|+.|++++|.+++.+|..+
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 89989898884688279578604212232013454211113444322223322210013556323200232110011331
Q ss_pred ----------CCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf ----------2886786998589978988850000233212000348857787774333455358276246867788886
Q 001562 601 ----------GHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNNLSGHIPH 670 (1052)
Q Consensus 601 ----------~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 670 (1052)
..+++|++|++++|++++.+|..++.++.|+.|+|++|++++.+|..++.+++|+.|++++|+++|.+|.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred EECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 00462743340335665797858801555877884141578784868803887896784777899898978802386886
Q ss_pred ----CCCCCCCCCCCCCCCCCCC
Q ss_conf ----6444432223970245789
Q 001562 671 ----LQHLDCIAFKGNKYLASCP 689 (1052)
Q Consensus 671 ----~~~l~~~~~~~n~~~~~~~ 689 (1052)
+..+..+.+..|+.....|
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECC
T ss_pred HHHCCCCCCEEECCCCCCCCCCC
T ss_conf 77578878978796881556089
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=474.53 Aligned_cols=579 Identities=20% Similarity=0.189 Sum_probs=392.5
Q ss_pred CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCEECCCCCCCCCCCCCEEECC
Q ss_conf 99987703730699964899982468899998764343243211078887855713787022089873687876489823
Q 001562 76 DHCTWHGVTCDHFTGRVTALRITGKATPWPSKSSVISGTLSASIAKLTELRTLSVPHNSFSGEIPAGVGELRLLEVLELQ 155 (1052)
Q Consensus 76 ~~C~w~gV~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 155 (1052)
|.|.+..|.|+....+.++..++ +.++.|++++|.+++..+..|.++++|++|+|+
T Consensus 2 C~~~~~~~~cs~~~L~~ip~~~~------------------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 57 (680)
T 1ziw_A 2 CTVSHEVADCSHLKLTQVPDDLP------------------------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57 (680)
T ss_dssp --CBSSEEECCSSCCSSCCSCSC------------------------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECC
T ss_pred CEEECCEEECCCCCCCCCCCCCC------------------------CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 54678744877798052641248------------------------887688898997787597887178767588788
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 75033347932437676774742234263358822339999867985687446755667875467777798247867877
Q 001562 156 GNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSVIDMSSNRLSGGLAIDSSSECEFLTYLKLSDNFLTES 235 (1052)
Q Consensus 156 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 235 (1052)
+|.+++..|..++++++|++|+|++|.+++..+..|.++++|++|++++|++.+ ++...+..+++|++|++++|.+++.
T Consensus 58 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ 136 (680)
T 1ziw_A 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSST 136 (680)
T ss_dssp SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CCHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 996485697787406676888899985675685453038888989898996685-3966741567888898989952466
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-------
Q ss_conf 781237989999897579825444342110--69998799942798977777011037999804315675556-------
Q 001562 236 IPKEIGKCRNLKNLLLDGNILEGSIPKEIG--TISELKVLDVSRNSLTDRIPVELADCSKLSVLVLTNIDASL------- 306 (1052)
Q Consensus 236 ~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~~~~------- 306 (1052)
.+..++.+++|++|++++|.+++..+..+. .+++|+.|++++|++.+..|..+..+.+|+.+++.++.+..
T Consensus 137 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 216 (680)
T 1ziw_A 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216 (680)
T ss_dssp CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH
T ss_pred CCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 72111245567779745884365297886244666321798889825655815553223445543056646805677787
Q ss_pred ------CCCCCCCCCCCCCCCCCHHHHCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf ------678877865444689862222025--782864689978655896544899742996799945334781220369
Q 001562 307 ------DLDNSRGEFSAFDGGVPYELLLSR--SLEVLWAPRANLGGRLPDNWSESCSLKVLNLGQNSLKGAVPKSLGMCR 378 (1052)
Q Consensus 307 ------~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 378 (1052)
.+....-..+.+.+..|..+..++ +|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..++
T Consensus 217 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (680)
T 1ziw_A 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296 (680)
T ss_dssp HHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT
T ss_pred HHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 77531510088745774364686675146767788877878876756802116741056855778856765865626788
Q ss_pred CCCEEECCCCCCCCC-----CC-----CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCC--CCCCCC--CC
Q ss_conf 998996889967668-----99-----888778644672115723457999-8645566667754562--001344--57
Q 001562 379 NLTYLDLSLNNLEGY-----LP-----MQLPVPCMVYFNVSQNNITGVLPR-FENVSCDNHFGFQDLQ--YANVPV--MG 443 (1052)
Q Consensus 379 ~L~~L~L~~N~l~~~-----~p-----~~~~l~~l~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~~~--~~~~~~--~~ 443 (1052)
+|+.|++++|...+. +| ....+++|+.+++++|++++..+. +..+..+..+.+.+.. ...++. ..
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~ 376 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred CCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHC
T ss_conf 85577363313213333355454386562467778888798982687885574065687289887980144323532202
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 64551001320036881135567654565311246403688650597566788974222358885328866752134646
Q 001562 444 SISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSVNLSANLLSGMS 523 (1052)
Q Consensus 444 ~~~~~~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~ 523 (1052)
.+ ....+..+++++|++.+..|.. ...++.+..+.+++|.+++.+|...+..++.++ ++++++|.+..++
T Consensus 377 ~~-~~~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 377 SL-AHSPLHILNLTKNKISKIESDA-------FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF--EIYLSYNKYLQLT 446 (680)
T ss_dssp GG-TTSCCCEEECTTSCCCEECTTT-------TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC--EEECCSCSEEECC
T ss_pred CC-CCCCCCEEECCCCCCCEECHHH-------HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC--EEECCCCCCCEEC
T ss_conf 45-5686766889999777677544-------207788888867787575435755325754612--7844899754227
Q ss_pred HHHHHHCCCCCEEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC----
Q ss_conf 5889731777419985686123--3564246999877799843884889994312186348588748983698673----
Q 001562 524 YEAFLLDCVQLVEFEAANNQIS--GSIAAGVGKLMKLQRLDLRGNRVSGSLPDELGKLKFLKWILLGGNNLTGEIP---- 597 (1052)
Q Consensus 524 ~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~---- 597 (1052)
...| ..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+
T Consensus 447 ~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 447 RNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TTTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred HHHH-HCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 6455-007543101101464422566776455578789998999987767944634553468885889973000000046
Q ss_pred ----HHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC---
Q ss_conf ----1012886786998589978988850000233212000348857787774333455358276246867788886---
Q 001562 598 ----SQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNNLSGHIPH--- 670 (1052)
Q Consensus 598 ----~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~--- 670 (1052)
..|.++++|+.|++++|+++...+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+.
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHC
T ss_conf 77414233799888888999978877977734666752238999977767976837898888898999968705966830
Q ss_pred --CCCCCCCCCCCCCCCCCCCC
Q ss_conf --64444322239702457899
Q 001562 671 --LQHLDCIAFKGNKYLASCPD 690 (1052)
Q Consensus 671 --~~~l~~~~~~~n~~~~~~~~ 690 (1052)
+.++..+.+.+|||.|+|+.
T Consensus 606 ~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCCEEECCCCCCCCCCCC
T ss_conf 1146657798318970257766
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=470.77 Aligned_cols=508 Identities=20% Similarity=0.281 Sum_probs=357.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCC---CCEEEECCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 999113999999998656799886-------5676899999987---703730699964899982468899998764343
Q 001562 44 SVPTTDSASLLSFKASISRDPSNL-------LATWNSSTDHCTW---HGVTCDHFTGRVTALRITGKATPWPSKSSVISG 113 (1052)
Q Consensus 44 ~~~~~d~~~ll~~k~~~~~~~~~~-------~~~W~~~~~~C~w---~gV~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~ 113 (1052)
+....|+.||.+++.++..+.+.. ..+|+.+++||.| .||+|+.. ++|+.+++.+.. +.|
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~---------l~g 95 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFG---------ASG 95 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSC---------CEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCEEEEEECCCC---------CCC
T ss_conf 6677889999999997589974547767765788777998000147798487678-978899842766---------577
Q ss_pred CCCHHHHCCCCCCEEEECCCCC------EE------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCC-------
Q ss_conf 2432110788878557137870------22------089873687876489823750333479324376-767-------
Q 001562 114 TLSASIAKLTELRTLSVPHNSF------SG------EIPAGVGELRLLEVLELQGNNFSGKIPYQMSNL-ERL------- 173 (1052)
Q Consensus 114 ~l~~~l~~l~~L~~L~L~~n~l------~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L------- 173 (1052)
.+|+++++|++|+.|+|++|.+ .+ .+|... +..|+ ++++.|.+.+.+|..++.+ ..+
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred CCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 288578568451189876885123774334532356733888--88887-657775541170666778877776427554
Q ss_pred -----------CEEECC--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----------------CCCCCCC--CCCC
Q ss_conf -----------747422--3426335882233999986798568744675-----------------5667875--4677
Q 001562 174 -----------RVLNLS--FNSFSGEVPRGLIGNGELSVIDMSSNRLSGG-----------------LAIDSSS--ECEF 221 (1052)
Q Consensus 174 -----------~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~~~~~~~--~l~~ 221 (1052)
+.+++. .|.+++ +|..+.++++|+.|++++|++++. +| ..+. .+++
T Consensus 173 ~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~ 250 (636)
T 4eco_A 173 KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKD 250 (636)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTT
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCC-HHHHHCCCCC
T ss_conf 6541013344213001013677750-7877725647878988688236642322122222100102486-3220044687
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCHHHHCC------CCCCEEECCCCCCCCCCCC--CCCCC
Q ss_conf 7779824786787778123798999989757982-544-434211069------9987999427989777770--11037
Q 001562 222 LTYLKLSDNFLTESIPKEIGKCRNLKNLLLDGNI-LEG-SIPKEIGTI------SELKVLDVSRNSLTDRIPV--ELADC 291 (1052)
Q Consensus 222 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~-l~~-~~p~~l~~l------~~L~~L~L~~N~l~~~~p~--~l~~l 291 (1052)
|++|++++|.+.+.+|..++.+++|+.|++++|. +++ .+|..++.+ ++|++|++++|+++ .+|. .++.+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l 329 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM 329 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred CCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCC
T ss_conf 88898048857762838883499978897847988766533578875430465788888989799377-66765554257
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99980431567555667887786544468986222202578286468997865589654489974299679994533478
Q 001562 292 SKLSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLLSRSLEVLWAPRANLGGRLPDNWSESCSLKVLNLGQNSLKGAVP 371 (1052)
Q Consensus 292 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p 371 (1052)
++|+.|++ ++|.+.|.+| .+..+++|+.|++++|+++ .+|
T Consensus 330 ~~L~~L~L--------------------------------------~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp 369 (636)
T 4eco_A 330 KKLGMLEC--------------------------------------LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP 369 (636)
T ss_dssp TTCCEEEC--------------------------------------CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC
T ss_pred CCCCEEEC--------------------------------------CCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCC
T ss_conf 88898969--------------------------------------0880705166-6478898898989899403-033
Q ss_pred CCCCCCCC-CCEEECCCCCCCCCCCCCCC---CCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12203699-98996889967668998887---786446721157234579998-64556666775456200134457645
Q 001562 372 KSLGMCRN-LTYLDLSLNNLEGYLPMQLP---VPCMVYFNVSQNNITGVLPRF-ENVSCDNHFGFQDLQYANVPVMGSIS 446 (1052)
Q Consensus 372 ~~~~~l~~-L~~L~L~~N~l~~~~p~~~~---l~~l~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (1052)
..+..+++ |+.|++++|+++ .+|..+. +++|+.+++++|++++..|.. ....
T Consensus 370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~---------------------- 426 (636)
T 4eco_A 370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD---------------------- 426 (636)
T ss_dssp TTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC----------------------
T ss_pred HHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC----------------------
T ss_conf 756510236868985298275-446655333457668897748857886524420022----------------------
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf 51001320036881135567654565311246403688650597566788974222358885328866752134646588
Q 001562 447 DENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSVNLSANLLSGMSYEA 526 (1052)
Q Consensus 447 ~~~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~~~~ 526 (1052)
...+.......|++++|.++.++...
T Consensus 427 ------------------------------------------------------~~~~~~~~L~~L~Ls~N~l~~lp~~~ 452 (636)
T 4eco_A 427 ------------------------------------------------------PTPFKGINVSSINLSNNQISKFPKEL 452 (636)
T ss_dssp ------------------------------------------------------SSCCCCCCEEEEECCSSCCCSCCTHH
T ss_pred ------------------------------------------------------CCCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf ------------------------------------------------------01125898888977279668678788
Q ss_pred HHHCCCCCEEEECCCCCCCCCCCCCCCCCC-------CCCEEECCCCCCCCCCCHHHC--CCCCCCEEECCCCCCCCCCC
Q ss_conf 973177741998568612335642469998-------777998438848899943121--86348588748983698673
Q 001562 527 FLLDCVQLVEFEAANNQISGSIAAGVGKLM-------KLQRLDLRGNRVSGSLPDELG--KLKFLKWILLGGNNLTGEIP 597 (1052)
Q Consensus 527 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~~ 597 (1052)
+ ..+++|+.|++++|+++.+.+..+.... +|++|+|++|.++ .+|..+. .+++|+.|++++|.+++ +|
T Consensus 453 ~-~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 453 F-STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP 529 (636)
T ss_dssp H-HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred H-CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CC
T ss_conf 7-158988989897997887397884044001221477338989699388-16854534458876989898998877-68
Q ss_pred HHHCCCCCCCEEEC------CCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC----
Q ss_conf 10128867869985------89978988850000233212000348857787774333455358276246867788----
Q 001562 598 SQFGHLISLVVLDL------SHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNNLSGH---- 667 (1052)
Q Consensus 598 ~~~~~l~~L~~L~l------s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~---- 667 (1052)
..+..+++|+.|++ ++|.+.+.+|..+..+++|+.|++++|++. .+|..+. ++|+.|++++|++...
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~ 606 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSY 606 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHH--CCCCEEECCCCCCCCCCHHH
T ss_conf 23530888787889888665667312127377856998788989899477-0597683--86789987699876336786
Q ss_pred -CCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf -88664-444322239702457899
Q 001562 668 -IPHLQ-HLDCIAFKGNKYLASCPD 690 (1052)
Q Consensus 668 -~~~~~-~l~~~~~~~n~~~~~~~~ 690 (1052)
+|... ....+.+......+.|+.
T Consensus 607 ~~~~~~~~~~~l~~~~~~~i~~C~~ 631 (636)
T 4eco_A 607 VCPYIEAGMYMLFYDKTQDIRGCDA 631 (636)
T ss_dssp THHHHHTTCCEEECCTTSEEESCGG
T ss_pred CCHHHHCCCCEEECCCCCCCCCCCC
T ss_conf 2011226610034377543479861
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=463.69 Aligned_cols=506 Identities=20% Similarity=0.254 Sum_probs=341.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CC--CCC------------CCEEEECCCCCEEEEEECCCC
Q ss_conf 78999911399999999865679988656768999-----99--987------------703730699964899982468
Q 001562 41 NAESVPTTDSASLLSFKASISRDPSNLLATWNSST-----DH--CTW------------HGVTCDHFTGRVTALRITGKA 101 (1052)
Q Consensus 41 ~~~~~~~~d~~~ll~~k~~~~~~~~~~~~~W~~~~-----~~--C~w------------~gV~C~~~~~~v~~l~l~~~~ 101 (1052)
.+++...+|+.||++||+++. +| +|+.+. ++ |.| .||+|+. .++|+.+++.+..
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~ 334 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFG 334 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTC
T ss_pred CCCCCCHHHHHHHHHHHHHCC-CC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCC
T ss_conf 645463178999999999737-99-----9886898653367764034666545335768428369-9979899872478
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCEEEE-CCCCCEECCCCCCCCC----CCCC--EE---------E-CCCCCCCCC--
Q ss_conf 89999876434324321107888785571-3787022089873687----8764--89---------8-237503334--
Q 001562 102 TPWPSKSSVISGTLSASIAKLTELRTLSV-PHNSFSGEIPAGVGEL----RLLE--VL---------E-LQGNNFSGK-- 162 (1052)
Q Consensus 102 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~L-~~n~l~~~~p~~~~~l----~~L~--~L---------~-Ls~N~l~~~-- 162 (1052)
+.|.+|+++++|++|+.|+| ++|.+.|..|-..... ...+ .+ + .....+...
T Consensus 335 ---------L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 335 ---------AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp ---------CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred ---------CCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf ---------99948557741555628430125633566642223445441156788877766665420375111567878
Q ss_pred ---------CCCCCCCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCEEECCCCCCCC-----------------CCCCC
Q ss_conf ---------793243767677474223--42633588223399998679856874467-----------------55667
Q 001562 163 ---------IPYQMSNLERLRVLNLSF--NSFSGEVPRGLIGNGELSVIDMSSNRLSG-----------------GLAID 214 (1052)
Q Consensus 163 ---------~p~~~~~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~~~~ 214 (1052)
.+........++.+.+.. |.+++ +|..+.++++|+.|+|++|++.+ .+|..
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHHHCCCCCCCCCCCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 7765073324322235442312040566676152-118875699987897968867887465322332222224458744
Q ss_pred C-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCHHHHCCC-------CCCEEECCCCCCCCCC
Q ss_conf 8-7546777779824786787778123798999989757982-544-4342110699-------9879994279897777
Q 001562 215 S-SSECEFLTYLKLSDNFLTESIPKEIGKCRNLKNLLLDGNI-LEG-SIPKEIGTIS-------ELKVLDVSRNSLTDRI 284 (1052)
Q Consensus 215 ~-~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~-l~~-~~p~~l~~l~-------~L~~L~L~~N~l~~~~ 284 (1052)
. +..+++|++|+|++|.+.+.+|..++.+++|+.|++++|+ +++ .+|..++.++ +|+.|++++|+++ .+
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CC
T ss_conf 40255999778987189887527387737999899989689876566461778752330155688319982289477-61
Q ss_pred CC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 70--1103799980431567555667887786544468986222202578286468997865589654489974299679
Q 001562 285 PV--ELADCSKLSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLLSRSLEVLWAPRANLGGRLPDNWSESCSLKVLNLG 362 (1052)
Q Consensus 285 p~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls 362 (1052)
|. .++.+++|+.|+++ +|.+. .+| .+..+++|+.|+|+
T Consensus 564 p~~~~l~~L~~L~~L~Ls--------------------------------------~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCV--------------------------------------HNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp CCHHHHTTCTTCCEEECT--------------------------------------TSCCC-BCC-CCCTTSEESEEECC
T ss_pred CCHHHHHCCCCCCEEECC--------------------------------------CCCCC-CCH-HHCCCCCCEEEECC
T ss_conf 872355158988989897--------------------------------------99825-621-22479850079871
Q ss_pred CCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCC---CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99453347812203699-98996889967668998887---786446721157234579998645566667754562001
Q 001562 363 QNSLKGAVPKSLGMCRN-LTYLDLSLNNLEGYLPMQLP---VPCMVYFNVSQNNITGVLPRFENVSCDNHFGFQDLQYAN 438 (1052)
Q Consensus 363 ~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~---l~~l~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~ 438 (1052)
+|.++ .+|..+..+++ |+.|+|++|+++ .+|..+. .+.|+.+++++|++++.+|.+..-
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~--------------- 666 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS--------------- 666 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC---------------
T ss_pred CCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHH---------------
T ss_conf 87125-035877525114989998499787-4764452255677788977088478864320000---------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 34457645510013200368811355676545653112464036886505975667889742223588853288667521
Q 001562 439 VPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSVNLSANL 518 (1052)
Q Consensus 439 ~~~~~~~~~~~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l~l~~n~ 518 (1052)
+..+.......|++++|.
T Consensus 667 --------------------------------------------------------------l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 667 --------------------------------------------------------------MDDYKGINASTVTLSYNE 684 (876)
T ss_dssp --------------------------------------------------------------TTTCCCCCEEEEECCSSC
T ss_pred --------------------------------------------------------------HCCCCCCCCCEEECCCCC
T ss_conf --------------------------------------------------------------001357976889831996
Q ss_pred CCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCC-------CCCCEEECCCCCCCCCCCHHHC--CCCCCCEEECCC
Q ss_conf 3464658897317774199856861233564246999-------8777998438848899943121--863485887489
Q 001562 519 LSGMSYEAFLLDCVQLVEFEAANNQISGSIAAGVGKL-------MKLQRLDLRGNRVSGSLPDELG--KLKFLKWILLGG 589 (1052)
Q Consensus 519 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~l~~ 589 (1052)
+..++...+ ..+++|+.|++++|+++.+++..+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++
T Consensus 685 L~~lp~~~~-~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 685 IQKFPTELF-ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCSCCHHHH-HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred CCCCCHHHH-CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHHHCCCCCCCEEEECC
T ss_conf 886597887-138988999898996885496784555334321487158988899786-652776244279869899089
Q ss_pred CCCCCCCCHHHCCCCCCCEEECCC------CCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 836986731012886786998589------97898885000023321200034885778777433345535827624686
Q 001562 590 NNLTGEIPSQFGHLISLVVLDLSH------NALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNN 663 (1052)
Q Consensus 590 N~l~~~~~~~~~~l~~L~~L~ls~------N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 663 (1052)
|.+++ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|+
T Consensus 763 N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 763 NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp SCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred CCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHC--CCCCEEECCCCC
T ss_conf 97876-105661599988998879977665632444868883699878898879978-74087662--877889997998
Q ss_pred CCCCCCC-C---CCCCCCCCCCCCCCC--CCC
Q ss_conf 7788886-6---444432223970245--789
Q 001562 664 LSGHIPH-L---QHLDCIAFKGNKYLA--SCP 689 (1052)
Q Consensus 664 l~~~~~~-~---~~l~~~~~~~n~~~~--~~~ 689 (1052)
+...-+. . .......+..|+..+ .|+
T Consensus 839 l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp TCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred CCCCCHHHCCCCCCCHHEEECCCCCCCCCCCC
T ss_conf 88117677256542311034688865537998
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=460.21 Aligned_cols=509 Identities=22% Similarity=0.214 Sum_probs=351.2
Q ss_pred CCCCCCHHHHCCCCCCEEEECCCCCEECC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 34324321107888785571378702208-98736878764898237503334793243767677474223426335882
Q 001562 111 ISGTLSASIAKLTELRTLSVPHNSFSGEI-PAGVGELRLLEVLELQGNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVPR 189 (1052)
Q Consensus 111 ~~~~l~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 189 (1052)
+++..+..+.++++|+.|+|++|.+.+.+ |..|.++++|++|+|++|.+.+..|..++++++|++|+|++|.+++.+|.
T Consensus 36 i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 36 IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred CCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 78329667766213708867899774441977853787788887989958531976715786658701767889734046
Q ss_pred C--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCHHHH
Q ss_conf 2--33999986798568744675566787546777779824786787778123798--9999897579825444342110
Q 001562 190 G--LIGNGELSVIDMSSNRLSGGLAIDSSSECEFLTYLKLSDNFLTESIPKEIGKC--RNLKNLLLDGNILEGSIPKEIG 265 (1052)
Q Consensus 190 ~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l--~~L~~L~l~~N~l~~~~p~~l~ 265 (1052)
. +.++++|+.|++++|.+.+..+...+..+++|++|++++|.+++..+..+..+ ++|+.|+++.|.+.+..+..++
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHH
T ss_conf 76455667999888987864232566557638898989898984776678875355677503578978866655455332
Q ss_pred CCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHC--CCCCCE
Q ss_conf 6999------8799942798977777011037---9998043156755566788778654446898622220--257828
Q 001562 266 TISE------LKVLDVSRNSLTDRIPVELADC---SKLSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLL--SRSLEV 334 (1052)
Q Consensus 266 ~l~~------L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~ 334 (1052)
.+.+ |+.|++++|.+++..+..+... .++..+.++.+...... .++.+.......+.. ..+|+.
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~-----~~~~l~~~~~~~f~~l~~~~L~~ 270 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF-----GFHNIKDPDQNTFAGLARSSVRH 270 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS-----SCSSSTTGGGTTTTTTTTSCCCE
T ss_pred HCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCC-----CCCCCCCCCHHHHHCCCCCCCCE
T ss_conf 2377223574007965788686567788876427441001121212234664-----44566889855652555478618
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCC
Q ss_conf 6468997865589654489974299679994533478122036999899688996766899888-778644672115723
Q 001562 335 LWAPRANLGGRLPDNWSESCSLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGYLPMQL-PVPCMVYFNVSQNNI 413 (1052)
Q Consensus 335 L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~l~~l~~l~ls~N~l 413 (1052)
|++++|.+.+..+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+ .++.|+.+++++|++
T Consensus 271 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 350 (844)
T 3j0a_A 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350 (844)
T ss_dssp EECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC
T ss_pred EECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 98979945515863452589999998979818987968836888999898989978851878846899999898989987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 45799986455666677545620013445764551001320036881135567654565311246403688650597566
Q 001562 414 TGVLPRFENVSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFN 493 (1052)
Q Consensus 414 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~ 493 (1052)
++..+. .+.....+..+++++|.+.+ ++ ..+.+..+.+.+|.++
T Consensus 351 ~~~~~~------------------------~~~~l~~L~~L~Ls~N~l~~-i~-----------~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 351 AIIQDQ------------------------TFKFLEKLQTLDLRDNALTT-IH-----------FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp CCCCSS------------------------CSCSCCCCCEEEEETCCSCC-CS-----------SCCSCSEEEEESCCCC
T ss_pred CCCCHH------------------------HHCCCCCCCEEECCCCCCCC-CC-----------CCCCCCHHCCCCCCCC
T ss_conf 762866------------------------61378889998898997786-16-----------8898232005899723
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC---
Q ss_conf 788974222358885328866752134646588973177741998568612335642-4699987779984388488---
Q 001562 494 GSVPGERISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAA-GVGKLMKLQRLDLRGNRVS--- 569 (1052)
Q Consensus 494 ~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~--- 569 (1052)
.+|... . ....++++.|.+..++...++..+++|+.|++++|++++..+. .+..+++|+.|++++|.++
T Consensus 395 -~l~~~~----~--~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 467 (844)
T 3j0a_A 395 -TLPKIN----L--TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467 (844)
T ss_dssp -CCCCCC----T--TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred -CCCCCC----C--CCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -145545----5--431221456753457556665127766666677871255554333566873100247777364410
Q ss_pred --CCCCHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf --999431218634858874898369867310128867869985899789888500002332120003488577877743
Q 001562 570 --GSLPDELGKLKFLKWILLGGNNLTGEIPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVS 647 (1052)
Q Consensus 570 --~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 647 (1052)
+..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++..|..
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH
T ss_conf 1355355544755365777889856553955704501221569999978745710110--04558889888478889668
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 3345535827624686778888664
Q 001562 648 FSTLVNLSALDLSFNNLSGHIPHLQ 672 (1052)
Q Consensus 648 ~~~l~~L~~l~l~~N~l~~~~~~~~ 672 (1052)
| .+|+.+++++|++.|.++...
T Consensus 546 ~---~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 546 F---VSLSVLDITHNKFICECELST 567 (844)
T ss_dssp C---SSCCEEEEEEECCCCSSSCCS
T ss_pred H---CCCCEEEECCCCCCCCCCCHH
T ss_conf 3---776889931997025366189
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=453.43 Aligned_cols=505 Identities=20% Similarity=0.170 Sum_probs=364.9
Q ss_pred CCCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 87855713787022089873687876489823750333479324376767747422342633588223399998679856
Q 001562 124 ELRTLSVPHNSFSGEIPAGVGELRLLEVLELQGNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSVIDMS 203 (1052)
Q Consensus 124 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 203 (1052)
.++.|++++|.+++..|..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..+.++++|+.|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC--EEECCCCCCC
Q ss_conf 87446755667875467777798247867877781237989999897579825444342110699987--9994279897
Q 001562 204 SNRLSGGLAIDSSSECEFLTYLKLSDNFLTESIPKEIGKCRNLKNLLLDGNILEGSIPKEIGTISELK--VLDVSRNSLT 281 (1052)
Q Consensus 204 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~--~L~L~~N~l~ 281 (1052)
+|++.+ ++...+..+++|++|++++|.+++.....+..+++|+.|++++|.+++..+..++.+++|+ .|++++|.+.
T Consensus 114 ~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred CCCCCC-CCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 267665-7810122378223898879834114765456876568777656844554965633221564038966798147
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCC----C-----------CCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf 77770110379998043156755566----7-----------88778654446898622220257828646899786558
Q 001562 282 DRIPVELADCSKLSVLVLTNIDASLD----L-----------DNSRGEFSAFDGGVPYELLLSRSLEVLWAPRANLGGRL 346 (1052)
Q Consensus 282 ~~~p~~l~~l~~L~~L~l~~n~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 346 (1052)
+..|..+ ...+|+.|++++|..... + .........+....+..+.. .+++.|++.+|.+.+..
T Consensus 193 ~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 193 GIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESINLQKHYFFNIS 270 (606)
T ss_dssp EECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-SEEEEEECTTCCCSSCC
T ss_pred CCCHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHC-CCEEEEEEECCCCCCCC
T ss_conf 5486673-001001355677266777765133564422002011026412268667430320-75059994457658557
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9654489974299679994533478122036999899688996766899888-778644672115723457999864556
Q 001562 347 PDNWSESCSLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGYLPMQL-PVPCMVYFNVSQNNITGVLPRFENVSC 425 (1052)
Q Consensus 347 p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~l~~l~~l~ls~N~l~~~~p~~~~~~~ 425 (1052)
+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..|..+ .+++|+.+++++|.+.+.+|.-
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----- 344 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG----- 344 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-----
T ss_pred HHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHH-----
T ss_conf 777445667888956288267-77821416546888977168768676023301576898889899744434624-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 66677545620013445764551001320036881135567654565311246403688650597566788974222358
Q 001562 426 DNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKCN 505 (1052)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~ 505 (1052)
.+.....+..+++++|.+.+..+. ...+..++
T Consensus 345 ------------------~~~~l~~L~~L~l~~n~l~~~~~~------------------------------~~~~~~l~ 376 (606)
T 3t6q_A 345 ------------------CLENLENLRELDLSHDDIETSDCC------------------------------NLQLRNLS 376 (606)
T ss_dssp ------------------TTTTCTTCCEEECCSSCCCEEEES------------------------------TTTTTTCT
T ss_pred ------------------HHHCCCCCCEEECCCCCCCCCCCC------------------------------CHHCCCCC
T ss_conf ------------------550667589887889966645675------------------------------22105678
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCE
Q ss_conf 885328866752134646588973177741998568612335642-4699987779984388488999431218634858
Q 001562 506 DLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAA-GVGKLMKLQRLDLRGNRVSGSLPDELGKLKFLKW 584 (1052)
Q Consensus 506 ~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 584 (1052)
.++ .|++++|.+.......+ ..+++|+.|++++|++.+..+. .+..+++|++|++++|.+++..|..+..+++|+.
T Consensus 377 ~L~--~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 377 HLQ--SLNLSYNEPLSLKTEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCC--EEECCSCSCEEECTTTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred CCC--EEECCCCCCCCCCHHHH-CCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCE
T ss_conf 889--89898996775788873-477457768788886777565212417655888989898557768778737887888
Q ss_pred EECCCCCCCCC---CCHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 87489836986---731012886786998589978988850000233212000348857787774333455358276246
Q 001562 585 ILLGGNNLTGE---IPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSF 661 (1052)
Q Consensus 585 L~l~~N~l~~~---~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~ 661 (1052)
|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++| .+++++
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred EECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCC
T ss_conf 9898998885434543124048876688799996670686463265678889898980686896684756651-898768
Q ss_pred CCCCCCCCC----CCCCCCCCCCCCCCCCCCC
Q ss_conf 867788886----6444432223970245789
Q 001562 662 NNLSGHIPH----LQHLDCIAFKGNKYLASCP 689 (1052)
Q Consensus 662 N~l~~~~~~----~~~l~~~~~~~n~~~~~~~ 689 (1052)
|++++.+|. +.+++.+.+.+||+.|.|+
T Consensus 533 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 94142687662567787889677998616677
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=442.81 Aligned_cols=495 Identities=17% Similarity=0.157 Sum_probs=280.4
Q ss_pred CCCCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 88785571378702208987368787648982375033347932437676774742234263358822339999867985
Q 001562 123 TELRTLSVPHNSFSGEIPAGVGELRLLEVLELQGNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSVIDM 202 (1052)
Q Consensus 123 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 202 (1052)
+.++.|++++|++++..+..|.++++|++|++++|.+++..|..++++++|++|+|++|.+++..|..|.++++|+.|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCC-------------
Q ss_conf 68744675566787546777779824786787-7781237989999897579825444342110699-------------
Q 001562 203 SSNRLSGGLAIDSSSECEFLTYLKLSDNFLTE-SIPKEIGKCRNLKNLLLDGNILEGSIPKEIGTIS------------- 268 (1052)
Q Consensus 203 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~------------- 268 (1052)
++|++.+ ++...+..+++|++|++++|.+++ .+|..++.+++|++|++++|.+++..+..++.+.
T Consensus 112 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred CCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCC
T ss_conf 3775554-451134898877989687885232530686732677778876688531057334121203420024300468
Q ss_pred --------------CCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf --------------9879994279897-7777011037999804315675556678877865444689862222025782
Q 001562 269 --------------ELKVLDVSRNSLT-DRIPVELADCSKLSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLLSRSLE 333 (1052)
Q Consensus 269 --------------~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 333 (1052)
+|+.|++++|.+. +..|..+.++++|+.+.+....... ...+..+....+..+..+ +++
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-----~~~l~~~~~~~~~~l~~l-~l~ 264 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD-----ERNLEIFEPSIMEGLCDV-TID 264 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT-----SCCCSCCCGGGGTTGGGS-EEE
T ss_pred CCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC-----CCCCCCCCHHHHHHHHHC-CHH
T ss_conf 97532571105676043352467856166778886026656523141111036-----774102681776666543-474
Q ss_pred EEEC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 8646-899786558965448997429967999453347812203699989968899676689988877864467211572
Q 001562 334 VLWA-PRANLGGRLPDNWSESCSLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGYLPMQLPVPCMVYFNVSQNN 412 (1052)
Q Consensus 334 ~L~l-~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~l~~l~ls~N~ 412 (1052)
.+.+ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|++ +.+|.. .++.|+.+++++|+
T Consensus 265 ~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNK 339 (606)
T ss_dssp EEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCS
T ss_pred HEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCH-HHH-HCCCCCCCCEEECCCCCC-CCCCCC-CCCCCCEEECCCCC
T ss_conf 5012366555543222-354887898771476604-435-433401177897646667-654667-88755644544786
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 34579998645566667754562001344576455100132003688113556765456531124640368865059756
Q 001562 413 ITGVLPRFENVSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMF 492 (1052)
Q Consensus 413 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~ 492 (1052)
..+..+ +.....+..+++++|.+.+..+
T Consensus 340 ~~~~~~--------------------------~~~l~~L~~L~ls~n~l~~~~~-------------------------- 367 (606)
T 3vq2_A 340 GSISFK--------------------------KVALPSLSYLDLSRNALSFSGC-------------------------- 367 (606)
T ss_dssp SCEECC--------------------------CCCCTTCCEEECCSSCEEEEEE--------------------------
T ss_pred CCCCHH--------------------------HCCCCCCCEEECCCCCCCCCCC--------------------------
T ss_conf 853100--------------------------0248988879775873687752--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC
Q ss_conf 678897422235888532886675213464658897317774199856861233564-2469998777998438848899
Q 001562 493 NGSVPGERISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIA-AGVGKLMKLQRLDLRGNRVSGS 571 (1052)
Q Consensus 493 ~~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 571 (1052)
+ ...+..++.++ .|+++.|.+..++ ..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+++.
T Consensus 368 ---~-~~~~~~~~~L~--~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 368 ---C-SYSDLGTNSLR--HLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp ---C-CHHHHCCSCCC--EEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred ---H-HHHHCCCCCCC--EEECCCCCCCCCH--HHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf ---0-12214677554--8678899530005--54068888896589887058753764564621378898968978743
Q ss_pred CCHHHCCCCCCCEEECCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 94312186348588748983698-67310128867869985899789888500002332120003488577877743334
Q 001562 572 LPDELGKLKFLKWILLGGNNLTG-EIPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFST 650 (1052)
Q Consensus 572 ~p~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 650 (1052)
.|..|..+++|+.|++++|.+++ .+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|..|..
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 35553477878989898983798546776045788998989888577648656154646898989899578748777068
Q ss_pred CCCCCEEECCCCCCCCCCCC---CC-CCCCCCCCCCCCCCCCC
Q ss_conf 55358276246867788886---64-44432223970245789
Q 001562 651 LVNLSALDLSFNNLSGHIPH---LQ-HLDCIAFKGNKYLASCP 689 (1052)
Q Consensus 651 l~~L~~l~l~~N~l~~~~~~---~~-~l~~~~~~~n~~~~~~~ 689 (1052)
+++|+.|++++|+++..++. ++ ++..+.+.+||+.|.|+
T Consensus 520 l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 8768988898983766687675210217488762898664776
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=439.52 Aligned_cols=526 Identities=18% Similarity=0.144 Sum_probs=425.3
Q ss_pred CCCCCCCCCC--CCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCEECCCCCCCCCC
Q ss_conf 7689999998--77037306999648999824688999987643432432110788878557137870220898736878
Q 001562 70 TWNSSTDHCT--WHGVTCDHFTGRVTALRITGKATPWPSKSSVISGTLSASIAKLTELRTLSVPHNSFSGEIPAGVGELR 147 (1052)
Q Consensus 70 ~W~~~~~~C~--w~gV~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 147 (1052)
.|.+..+.|. +..|.|.......++-.++.....+.+..+.+++..+..+.++++|++|++++|++.+..|..|.+++
T Consensus 2 ~~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 81 (606)
T 3t6q_A 2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH 81 (606)
T ss_dssp ----CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred CCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCC
T ss_conf 64568601236872377777980628677898675898158734717966725676652897889835524851136843
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 76489823750333479324376767747422342633588223399998679856874467556678754677777982
Q 001562 148 LLEVLELQGNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSVIDMSSNRLSGGLAIDSSSECEFLTYLKL 227 (1052)
Q Consensus 148 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 227 (1052)
+|++|+|++|++.+..|..++.+++|++|++++|.+++..+..+.++++|+.|++++|++.+ ++...+..+++|++|++
T Consensus 82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEC
T ss_conf 36764488985654586552344215376521267665781012237822389887983411-47654568765687776
Q ss_pred CCCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC-------------
Q ss_conf 47867877781237989999--897579825444342110699987999427989777770110379-------------
Q 001562 228 SDNFLTESIPKEIGKCRNLK--NLLLDGNILEGSIPKEIGTISELKVLDVSRNSLTDRIPVELADCS------------- 292 (1052)
Q Consensus 228 ~~N~l~~~~~~~l~~l~~L~--~L~l~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~------------- 292 (1052)
++|.+++..+..++.+++|+ .|++++|.+++..+..+.. .+|+.|++++|.. ++..+..+.
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCT
T ss_pred CCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHH---HHHHHHHCCCCCHHHEECHHHC
T ss_conf 56844554965633221564038966798147548667300-1001355677266---7777651335644220020110
Q ss_pred ------------------CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf ------------------99804315675556678877865444689862222025782864689978655896544899
Q 001562 293 ------------------KLSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLLSRSLEVLWAPRANLGGRLPDNWSESC 354 (1052)
Q Consensus 293 ------------------~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 354 (1052)
+|+.|++++|.+. +-.+..+..+++|+.|++++|.+. .+|+.+..++
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~ 301 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFF--------------NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCS--------------SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT
T ss_pred CCCCCCCCHHHHCHHHCCCEEEEEEECCCCC--------------CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCC
T ss_conf 2641226866743032075059994457658--------------557777445667888956288267-7782141654
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-C-CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7429967999453347812203699989968899676689988-8-7786446721157234579998645566667754
Q 001562 355 SLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGYLPMQ-L-PVPCMVYFNVSQNNITGVLPRFENVSCDNHFGFQ 432 (1052)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~-~l~~l~~l~ls~N~l~~~~p~~~~~~~~~~~~~~ 432 (1052)
+|+.|++++|.+++..|..+..+++|+.|++++|++.+.+|.. + .+++|+.+++++|++++..+.
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------- 368 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC------------- 368 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES-------------
T ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC-------------
T ss_conf 6888977168768676023301576898889899744434624550667589887889966645675-------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 56200134457645510013200368811355676545653112464036886505975667889742223588853288
Q 001562 433 DLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSV 512 (1052)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l 512 (1052)
...+.....+..+++++|++.+..| ..+..++.++ .|
T Consensus 369 ---------~~~~~~l~~L~~L~l~~n~l~~~~~--------------------------------~~~~~l~~L~--~L 405 (606)
T 3t6q_A 369 ---------NLQLRNLSHLQSLNLSYNEPLSLKT--------------------------------EAFKECPQLE--LL 405 (606)
T ss_dssp ---------TTTTTTCTTCCEEECCSCSCEEECT--------------------------------TTTTTCTTCS--EE
T ss_pred ---------CHHCCCCCCCCEEECCCCCCCCCCH--------------------------------HHHCCCCCCC--EE
T ss_conf ---------2210567888989898996775788--------------------------------8734774577--68
Q ss_pred ECCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC---CCCHHHCCCCCCCEEECCC
Q ss_conf 6675213464658897317774199856861233564246999877799843884889---9943121863485887489
Q 001562 513 NLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAAGVGKLMKLQRLDLRGNRVSG---SLPDELGKLKFLKWILLGG 589 (1052)
Q Consensus 513 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~p~~~~~l~~L~~L~l~~ 589 (1052)
+++.|.+........+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCC
T ss_conf 78888677756521241765588898989855776877873788788898989988854345431240488766887999
Q ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 83698673101288678699858997898885000023321200034885778777433345535827624686778888
Q 001562 590 NNLTGEIPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNNLSGHIP 669 (1052)
Q Consensus 590 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 669 (1052)
|.+++..|..|..+++|+.|++++|++++..|..+..++.| .|++++|++++..|..+..+++|+.+++++|++.+.++
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 96670686463265678889898980686896684756651-89876894142687662567787889677998616677
Q ss_pred CCC
Q ss_conf 664
Q 001562 670 HLQ 672 (1052)
Q Consensus 670 ~~~ 672 (1052)
...
T Consensus 565 ~~~ 567 (606)
T 3t6q_A 565 NIY 567 (606)
T ss_dssp GHH
T ss_pred CHH
T ss_conf 578
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=432.39 Aligned_cols=513 Identities=21% Similarity=0.203 Sum_probs=419.2
Q ss_pred CCCCCCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 7888785571378702208987368787648982375033347-932437676774742234263358822339999867
Q 001562 121 KLTELRTLSVPHNSFSGEIPAGVGELRLLEVLELQGNNFSGKI-PYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSV 199 (1052)
Q Consensus 121 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 199 (1052)
..+.++.|+|++|.+++..|..|.++++|++|+|++|...+.+ |..++++++|++|+|++|.+++..|..|.++++|+.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHCC--CCCCEEEC
Q ss_conf 98568744675566-787546777779824786787778-123798999989757982544434211069--99879994
Q 001562 200 IDMSSNRLSGGLAI-DSSSECEFLTYLKLSDNFLTESIP-KEIGKCRNLKNLLLDGNILEGSIPKEIGTI--SELKVLDV 275 (1052)
Q Consensus 200 L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l--~~L~~L~L 275 (1052)
|++++|.+.+.++. ..+..+++|++|++++|.+++..+ ..|+.+++|+.|++++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred CCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCC---------C
Q ss_conf 279897777701103799------9804315675556678877865444689862222025782864689---------9
Q 001562 276 SRNSLTDRIPVELADCSK------LSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLLSRSLEVLWAPR---------A 340 (1052)
Q Consensus 276 ~~N~l~~~~p~~l~~l~~------L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---------n 340 (1052)
+.|.+.+..|..++.+.+ |+.|++++|.+....... + ........+..+.+.. +
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~---~--------~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN---F--------SNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG---G--------GGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHH---H--------HHHCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 788666554553322377223574007965788686567788---8--------76427441001121212234664445
Q ss_pred CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCC
Q ss_conf 7865589654489--974299679994533478122036999899688996766899888-7786446721157234579
Q 001562 341 NLGGRLPDNWSES--CSLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGYLPMQL-PVPCMVYFNVSQNNITGVL 417 (1052)
Q Consensus 341 ~l~~~~p~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~l~~l~~l~ls~N~l~~~~ 417 (1052)
.+.+.....|..+ ++|+.|++++|.+.+..|..+..+++|+.|+|++|++++..|..+ .+++|+.|++++|++++..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 66889855652555478618989799455158634525899999989798189879688368889998989899788518
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 99864556666775456200134457645510013200368811355676545653112464036886505975667889
Q 001562 418 PRFENVSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVP 497 (1052)
Q Consensus 418 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p 497 (1052)
|. .+.....+..+++++|.+.+..+. ....++.+..+.+++|.+++...
T Consensus 331 ~~------------------------~~~~l~~L~~L~L~~N~i~~~~~~-------~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 331 SS------------------------NFYGLPKVAYIDLQKNHIAIIQDQ-------TFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp SC------------------------SCSSCTTCCEEECCSCCCCCCCSS-------CSCSCCCCCEEEEETCCSCCCSS
T ss_pred HH------------------------HHCCCCCCCEEECCCCCCCCCCHH-------HHCCCCCCCEEECCCCCCCCCCC
T ss_conf 78------------------------846899999898989987762866-------61378889998898997786168
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCH-H
Q ss_conf 7422235888532886675213464658897317774199856861233564-2469998777998438848899943-1
Q 001562 498 GERISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIA-AGVGKLMKLQRLDLRGNRVSGSLPD-E 575 (1052)
Q Consensus 498 ~~~~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~-~ 575 (1052)
++.++ .++++.|.+..++.. ...++.+++++|++++... ..+..+++|++|++++|++++..+. .
T Consensus 380 ------~~~L~--~L~l~~N~l~~l~~~-----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 380 ------IPSIP--DIFLSGNKLVTLPKI-----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp ------CCSCS--EEEEESCCCCCCCCC-----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred ------CCCCC--HHCCCCCCCCCCCCC-----CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCC
T ss_conf ------89823--200589972314554-----55431221456753457556665127766666677871255554333
Q ss_pred HCCCCCCCEEECCCCCCC-----CCCCHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 218634858874898369-----867310128867869985899789888500002332120003488577877743334
Q 001562 576 LGKLKFLKWILLGGNNLT-----GEIPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFST 650 (1052)
Q Consensus 576 ~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 650 (1052)
+..+++|+.|++++|.++ +..+..|.++++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~- 525 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP- 525 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH-
T ss_conf 5668731002477773644101355355544755365777889856553955704501221569999978745710110-
Q ss_pred CCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 553582762468677888866-4444322239702457899
Q 001562 651 LVNLSALDLSFNNLSGHIPHL-QHLDCIAFKGNKYLASCPD 690 (1052)
Q Consensus 651 l~~L~~l~l~~N~l~~~~~~~-~~l~~~~~~~n~~~~~~~~ 690 (1052)
++|+.|++++|++++..|.. ..+..+.+.+||+.|.|+.
T Consensus 526 -~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 526 -ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp -SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred -CCCCEEECCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCC
T ss_conf -0455888988847888966837768899319970253661
Done!