BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001563
         (1052 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
           Semialdehyde Aminotransferase
 pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
           Semialdehyde Aminotransferase
          Length = 434

 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 377 VPYLKGDAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYL 436
           + YL    P +     P IT+   T+  N V  G P  L       V+  +   +  P L
Sbjct: 58  IDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALE------VKFAKXLKEAXPAL 111

Query: 437 CRFQYENSGLYIINTMEPILQSYTERARM 465
            + ++ NSG   + T   + ++YT R ++
Sbjct: 112 DKVRFVNSGTEAVXTTIRVARAYTGRTKI 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,617,888
Number of Sequences: 62578
Number of extensions: 1054848
Number of successful extensions: 2189
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2189
Number of HSP's gapped (non-prelim): 3
length of query: 1052
length of database: 14,973,337
effective HSP length: 109
effective length of query: 943
effective length of database: 8,152,335
effective search space: 7687651905
effective search space used: 7687651905
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)