Query 001563
Match_columns 1052
No_of_seqs 177 out of 451
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 4E-206 9E-211 1658.0 93.4 1041 1-1050 1-1064(1082)
2 COG5101 CRM1 Importin beta-rel 100.0 1.3E-71 2.7E-76 603.4 66.4 894 3-1050 12-1029(1053)
3 KOG4541 Nuclear transport rece 100.0 7.9E-53 1.7E-57 451.8 38.8 650 363-1051 8-743 (748)
4 KOG2020 Nuclear transport rece 100.0 1E-43 2.3E-48 427.4 61.6 792 3-931 9-891 (1041)
5 KOG2022 Nuclear transport rece 99.9 1.6E-15 3.4E-20 174.6 69.6 906 3-1051 5-976 (982)
6 PF08767 CRM1_C: CRM1 C termin 99.8 5.7E-18 1.2E-22 187.0 24.9 250 755-1050 45-315 (319)
7 KOG2021 Nuclear mRNA export fa 99.8 1.8E-13 4E-18 154.6 56.9 261 4-293 2-275 (980)
8 KOG2171 Karyopherin (importin) 99.3 3.7E-07 8E-12 110.4 53.5 149 3-157 2-152 (1075)
9 KOG2023 Nuclear transport rece 99.2 1.3E-06 2.7E-11 99.1 47.0 807 6-1038 11-867 (885)
10 PF08389 Xpo1: Exportin 1-like 99.0 1.8E-09 3.9E-14 106.8 12.4 147 96-269 1-148 (148)
11 KOG1991 Nuclear transport rece 98.9 0.00049 1.1E-08 82.6 64.2 161 19-192 17-191 (1010)
12 KOG1992 Nuclear export recepto 98.9 0.00026 5.7E-09 83.0 49.7 175 6-191 3-194 (960)
13 KOG2081 Nuclear transport regu 98.8 1.1E-06 2.4E-11 99.0 23.6 310 24-377 2-322 (559)
14 PF03810 IBN_N: Importin-beta 98.2 6E-06 1.3E-10 71.3 7.9 65 26-90 1-77 (77)
15 KOG1241 Karyopherin (importin) 98.0 0.083 1.8E-06 62.4 49.1 218 17-275 12-247 (859)
16 COG5657 CSE1 CAS/CSE protein i 96.5 0.11 2.4E-06 62.6 18.1 147 1-155 1-155 (947)
17 KOG2274 Predicted importin 9 [ 96.2 4.6 0.0001 49.4 49.1 131 18-154 16-159 (1005)
18 KOG1993 Nuclear transport rece 95.2 10 0.00022 45.8 55.4 160 18-191 12-183 (978)
19 COG5656 SXM1 Importin, protein 93.8 20 0.00044 43.2 57.9 133 19-154 16-157 (970)
20 KOG4541 Nuclear transport rece 92.6 24 0.00053 40.9 25.6 23 533-556 356-378 (748)
21 COG5215 KAP95 Karyopherin (imp 91.0 37 0.00081 39.7 46.9 107 17-130 16-140 (858)
22 PF03378 CAS_CSE1: CAS/CSE pro 81.2 73 0.0016 37.3 17.8 110 648-772 83-194 (435)
23 KOG2023 Nuclear transport rece 72.3 46 0.00099 39.8 12.4 136 246-406 175-310 (885)
24 PF12460 MMS19_C: RNAPII trans 65.5 2.3E+02 0.0049 33.1 17.0 142 123-298 271-412 (415)
25 PF03224 V-ATPase_H_N: V-ATPas 58.2 1.5E+02 0.0033 32.9 13.4 171 28-212 93-268 (312)
26 KOG1241 Karyopherin (importin) 54.5 5.1E+02 0.011 32.1 26.8 261 725-1004 249-544 (859)
27 PF12726 SEN1_N: SEN1 N termin 50.9 6.2E+02 0.013 32.0 21.3 159 869-1039 417-589 (727)
28 PF12348 CLASP_N: CLASP N term 42.7 3.1E+02 0.0066 28.7 12.1 35 898-932 52-86 (228)
29 PF01602 Adaptin_N: Adaptin N 41.6 2.5E+02 0.0054 33.7 12.7 122 17-150 53-179 (526)
30 PF13646 HEAT_2: HEAT repeats; 41.1 93 0.002 26.7 6.6 87 7-107 1-87 (88)
31 PF03378 CAS_CSE1: CAS/CSE pro 38.7 7.1E+02 0.015 29.2 21.7 100 656-768 45-148 (435)
32 PF14225 MOR2-PAG1_C: Cell mor 38.4 3.3E+02 0.0072 29.5 11.4 146 177-335 4-154 (262)
33 PF14222 MOR2-PAG1_N: Cell mor 35.7 4.8E+02 0.01 31.7 13.3 146 867-1023 79-248 (552)
34 KOG0889 Histone acetyltransfer 34.5 1.3E+03 0.028 34.4 18.0 116 804-932 666-800 (3550)
35 COG5656 SXM1 Importin, protein 34.1 1E+03 0.022 29.7 18.0 73 58-134 438-510 (970)
36 PF13646 HEAT_2: HEAT repeats; 33.4 1.7E+02 0.0037 24.9 7.1 55 7-63 33-87 (88)
37 PF08623 TIP120: TATA-binding 32.5 1.1E+02 0.0023 30.7 5.9 55 869-930 42-96 (169)
38 PLN03076 ARF guanine nucleotid 32.4 1.6E+03 0.035 31.5 22.7 279 40-351 1131-1471(1780)
39 PF13513 HEAT_EZ: HEAT-like re 32.3 1.1E+02 0.0023 23.8 5.0 55 868-926 1-55 (55)
40 PF08167 RIX1: rRNA processing 31.9 4.8E+02 0.01 25.9 10.7 128 122-282 24-151 (165)
41 KOG4646 Uncharacterized conser 31.6 1E+02 0.0022 29.4 5.1 42 4-45 15-56 (173)
42 PF02985 HEAT: HEAT repeat; I 29.8 79 0.0017 21.4 3.3 30 900-929 1-30 (31)
43 PF00790 VHS: VHS domain; Int 28.9 4.5E+02 0.0097 25.2 9.6 57 50-108 53-114 (140)
44 PF12922 Cnd1_N: non-SMC mitot 28.8 93 0.002 31.2 5.0 69 260-328 96-165 (171)
45 PTZ00429 beta-adaptin; Provisi 27.6 9E+02 0.02 30.6 14.2 126 17-152 79-208 (746)
46 PF10521 DUF2454: Protein of u 26.3 7.5E+02 0.016 27.0 12.0 164 109-306 106-279 (282)
47 PF01603 B56: Protein phosphat 26.1 1.1E+03 0.023 27.4 14.1 148 7-158 135-310 (409)
48 KOG4500 Rho/Rac GTPase guanine 25.9 3.2E+02 0.007 31.3 8.7 66 816-892 153-222 (604)
49 KOG1488 Translational represso 25.1 1.2E+03 0.026 27.7 15.0 57 55-120 259-316 (503)
50 PF04826 Arm_2: Armadillo-like 25.0 8.8E+02 0.019 26.1 14.3 143 4-153 11-164 (254)
51 PF01603 B56: Protein phosphat 24.5 1.1E+03 0.025 27.2 16.6 44 962-1006 337-386 (409)
52 PF05536 Neurochondrin: Neuroc 24.0 1.3E+03 0.029 27.8 18.9 229 36-306 3-245 (543)
53 PF08506 Cse1: Cse1; InterPro 23.5 1.1E+03 0.025 26.8 20.7 57 581-637 133-192 (370)
54 cd00020 ARM Armadillo/beta-cat 23.2 5.4E+02 0.012 22.9 9.0 109 38-151 7-119 (120)
55 PF12333 Ipi1_N: Rix1 complex 22.7 1.3E+02 0.0028 27.2 4.3 35 896-930 8-42 (102)
56 PF14225 MOR2-PAG1_C: Cell mor 21.3 5.5E+02 0.012 27.8 9.4 109 148-280 152-260 (262)
57 PF14500 MMS19_N: Dos2-interac 20.2 1.1E+03 0.024 25.4 19.0 100 50-155 10-114 (262)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-206 Score=1657.98 Aligned_cols=1041 Identities=50% Similarity=0.843 Sum_probs=996.1
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-cCCCHHHHHH
Q 001563 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQLRLD 79 (1052)
Q Consensus 1 ~~~l~~le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~-~~l~~~~r~~ 79 (1052)
|+++++||.+|+.+|.++|+.+|.+||+.|.+|.++|+++.+|+.+|++++.||.++.|+++|.+.+.+ +.+|.++|.+
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrld 80 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLD 80 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCCh----hhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc
Q 001563 80 IRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDD----RFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1052)
Q Consensus 80 lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~----~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~ 155 (1052)
||+|++||+.+++|.+++||...+++++|+++|.||+|.. ++|+.+.++.+|++.++.+||++|+.||+.+++||+
T Consensus 81 ir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN 160 (1082)
T KOG1410|consen 81 IRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMN 160 (1082)
T ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999854 789999999999987789999999999999999999
Q ss_pred CCCCCcchHHhHhhhhhccccchHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHhHhccccCccCCCCCCcccccc
Q 001563 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLK-----SDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (1052)
Q Consensus 156 ~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~-----~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~ 230 (1052)
+.+.+.+..+|||...+|||+.|.+||.+++.+|+... ++.+..+..++|++..+||+|||+|++.||++||..+
T Consensus 161 ~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ct 240 (1082)
T KOG1410|consen 161 QADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCT 240 (1082)
T ss_pred CCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999875 3335689999999999999999999999999999999
Q ss_pred ccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCc
Q 001563 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADH 310 (1052)
Q Consensus 231 ~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~ 310 (1052)
||+|.+||..|.|++.+++||++|...+|+++..++.||+|+||+||++|++ .+|.+|++++++|+..|+++++|++|+
T Consensus 241 VQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~-aeRa~yl~~Lv~Gvk~il~np~~LsD~ 319 (1082)
T KOG1410|consen 241 VQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNG-AERAKYLQHLVEGVKRILENPQGLSDP 319 (1082)
T ss_pred eecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhCCcCCCCc
Confidence 9999999999999999999999999899999999999999999999999965 899999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHhhcccCccCCCCcchhhh
Q 001563 311 DNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDE 390 (1052)
Q Consensus 311 e~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~~~~~~~~~l~~ 390 (1052)
.+||+|||++.|+++|||+.+|+++++|++||+.+|.||+.+++.|.|+++|.+|||.+|.+|+.++||++++.|+.++.
T Consensus 320 ~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~~phlLd~ 399 (1082)
T KOG1410|consen 320 ANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNTEPHLLDT 399 (1082)
T ss_pred chHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCCChHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccccccccccCCCCCCCCCCcHHHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCc
Q 001563 391 FVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDK 470 (1052)
Q Consensus 391 ~~~~I~~~yi~~~l~~~~~~~~~e~~e~~~~d~~~~~~~le~i~~l~r~~~~~t~~~l~~ll~~~~~~~~~~~~~~~~~~ 470 (1052)
|+|+|.++||.||++.++.+++|+ .|+|+||.+...+++|++++++||.|+.|+.+|.++|++..++|++....+..++
T Consensus 400 y~PeIt~afi~SRl~sV~~ivrd~-~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~ 478 (1082)
T KOG1410|consen 400 YCPEITKAFITSRLQSVEIIVRDG-LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSAND 478 (1082)
T ss_pred hcHHHHHHHHHHHhhhhheecccC-CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCc
Confidence 999999999999999998777766 6999999999999999999999999999999999999999999988765444466
Q ss_pred chhhHHHHHHHHHHHHHHHHhhcccccCCCcccccchhhhHHHHHHHHhhhccccccccccccccHHHHHHHHHHHHHHh
Q 001563 471 SEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHF 550 (1052)
Q Consensus 471 ~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~ 550 (1052)
.++.+.|++|.|+|+|+|++++|+ .+.+++++++++||+|+++|++++++.|... +..+.+|++.|++|||++|
T Consensus 479 ~d~ai~EgrL~Wlv~lvgtvV~gk-~t~~Std~~d~mDgEL~arvlql~nlmdsr~-----~~~~n~rle~ail~f~eqF 552 (1082)
T KOG1410|consen 479 ADIAIQEGRLVWLVYLVGTVVGGK-TTATSTDEHDAMDGELSARVLQLVNLMDSRL-----PLKGNERLELAILHFLEQF 552 (1082)
T ss_pred hhHHHHhhhhhhhHHHhHHHhcce-ecccccchhhhhhhHHHHHHHHHHHhhhccc-----chhhhHHHHHHHHHHHHHH
Confidence 677788999999999999999999 4456788999999999999999999988754 4566799999999999999
Q ss_pred hhHhhccccccchHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcccchhhHHhcchHH
Q 001563 551 RKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTI 630 (1052)
Q Consensus 551 ~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~l~ki~~~l~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~ 630 (1052)
+|+|+|++.++ ++|+|.+++|.+|+.|+..+++++++||.+||++|+..++|+..+++||.+|+.|++.+|+++++|.|
T Consensus 553 Rk~YvgDQ~~r-sSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLslf~dLs~GY~~~kkL~kl~~V 631 (1082)
T KOG1410|consen 553 RKAYVGDQIQR-SSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTLSLFNDLSLGYSAVKKLVKLDAV 631 (1082)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHhhhHHHHHHHhcchhh
Confidence 99999999877 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCcccc---cccchhHHHHHHHHHHHhcc--CChHHHHHhhHHHHHHHHHhh-cCCCcccccHHHHHH
Q 001563 631 KFIVANHTREHFPFLEEY---RCSRSRTTFYYTIGWLIFME--ESPVKFKSSMDPLLQVFISLE-STPDSMFRTDAVKCA 704 (1052)
Q Consensus 631 ~~l~~~~~~~~~~~l~~~---~~~~~r~~~y~al~~~~~~~--~~~~~~~~~l~p~~~~~~~l~-~~~~~~~~~~~~~~~ 704 (1052)
+.+++||++++|||++.. +..|+||+||.|+|++++.| +++..|++||.|+++.|..+. .-+++.++.+++|+.
T Consensus 632 qfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sede~~fe~fm~PLt~~fe~v~~~~~nn~f~ee~vK~~ 711 (1082)
T KOG1410|consen 632 QFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSEDEDMFERFMLPLTDAFEGVLQVFQNNCFEEEQVKRI 711 (1082)
T ss_pred hhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 999999999999999866 66899999999999999887 447799999999999999775 222256999999999
Q ss_pred HHHHHHHHhhHHhhhccchhHHHHHHHHhhcchHHHHHHhhcccCCCchHHHHHHHHHHHhhccccceeccCCCcchhhh
Q 001563 705 LIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILL 784 (1052)
Q Consensus 705 l~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~~l 784 (1052)
++|++||+||||.|.+++.+|.++|+|+||.++|++...++.|.++|++++|||||++|+|+||+||+.|+.+||+|++|
T Consensus 712 liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLL 791 (1082)
T KOG1410|consen 712 LIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILL 791 (1082)
T ss_pred HHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCC--CchhhHhhhhhhHHHHHHHHHHhhcCCCcccccccccCCCcHHHHHHHHHHhhcccChh
Q 001563 785 FREVSKLIVAYGSRVLSLP--NAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLA 862 (1052)
Q Consensus 785 f~~~~~l~~~y~~~~~~~~--~~~~~~~~~~k~l~~~l~~l~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~~~l~ip~~ 862 (1052)
||+++|++..||.+++++| ++...|+++||+|.+|+.+|+++++|+|||||||++|||+++.+++..+++|+++||..
T Consensus 792 FrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fvKm~lsIp~s 871 (1082)
T KOG1410|consen 792 FRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQTFVKMLLSIPHS 871 (1082)
T ss_pred ehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999998 45568999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhHhhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCC--
Q 001563 863 DILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAP-- 940 (1052)
Q Consensus 863 dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~-- 940 (1052)
|+++|||+.++||.|+|.+++.|+.++.+|+++.|..++.||..|+++.|+.|++.||.++|++++|+|+++.++..|
T Consensus 872 D~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~tYlfk~itr~~~p~~ 951 (1082)
T KOG1410|consen 872 DLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVTYLFKRITRSTKPTR 951 (1082)
T ss_pred HHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHHHHHHHHhccCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred ---CChHHHHHHHHhhhCCCcHHHHHHHHHHHHhccCCCchhhchhhhHHHHhcCHHHHHHHHHHHHhcCChhhHHHHHH
Q 001563 941 ---TSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSLILISEQVFSDLKAQILTSQPVDQHQRLSV 1017 (1052)
Q Consensus 941 ---~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~s~~L~~li~~~~~~f~~l~~~li~~q~~~~~~~l~~ 1017 (1052)
.+|.++.+..++++||+++++||+.++++++|+||++||++||||++||++++++|..++.+|+++||+++|+++..
T Consensus 952 ~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQWSlSRPlLgLILi~E~~fSdlk~~l~ssQp~dkqq~l~~ 1031 (1082)
T KOG1410|consen 952 KVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQWSLSRPLLGLILINEKYFSDLKASLTSSQPYDKQQDLDM 1031 (1082)
T ss_pred cCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccccccchhhHHHhhhHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001563 1018 CFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1050 (1052)
Q Consensus 1018 af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1050 (1052)
||.+||+||+.+++.||||+||+|+..||++|+
T Consensus 1032 cF~~LM~~ve~nL~~KNrD~FTQNLt~FRrdv~ 1064 (1082)
T KOG1410|consen 1032 CFTNLMEGVERNLTVKNRDRFTQNLTRFRRDVA 1064 (1082)
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-71 Score=603.36 Aligned_cols=894 Identities=16% Similarity=0.190 Sum_probs=634.5
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 001563 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1052)
Q Consensus 3 ~l~~le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~l 80 (1052)
+++.||++++.+|.|.+ .++++|+++|+.|++.||+|.++++||++|++|.++|.|++.|.++|++ +.+|.++|.||
T Consensus 12 diallDkVVttfyqg~g-~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 12 DIALLDKVVTTFYQGDG-RKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred CHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 57899999999998775 7799999999999999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccC---chhHHHHHHHHHHHHH
Q 001563 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQAT---SDHYAIGLKILNQLVS 152 (1052)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~---~~~~~~gl~lL~~lv~ 152 (1052)
|+|+.+.+++++.+. .+++.+++..+++.|+|++||.+|| +||+++.+..+ .+ +++.++.|++|++.|+
T Consensus 91 Rnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP--~FIpeli~~S~-~s~~vCeNnmivLklLsEEvF 167 (1053)
T COG5101 91 RNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWP--TFIPELINVSQ-ISMEVCENNMIVLKLLSEEVF 167 (1053)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--hhhHHHHhhcc-chHHHHhccHHHHHHhHHHHH
Confidence 999999999997553 3899999999999999999999999 99999987763 33 4788999999999999
Q ss_pred hccCCCCCcchHHhHhhhhhccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccCccCCCCCCcccccccc
Q 001563 153 EMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQ 232 (1052)
Q Consensus 153 Ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~ 232 (1052)
+||..+|+....+|.|- ++..+ +++||++|-++|+...+ +++++++|+.+.++|.|.|.++. +|
T Consensus 168 dfSaeqmTq~k~~~LkN--qm~~E-F~qIF~lc~qiLE~~~~---~SLi~ATLesllrfl~wiPl~yI-fe--------- 231 (1053)
T COG5101 168 DFSAEQMTQVKKRLLKN--QMKIE-FPQIFGLCKQILEYSRD---ESLIEATLESLLRFLEWIPLDYI-FE--------- 231 (1053)
T ss_pred hccHHHHHHHHHHHHHH--HHhhh-HHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHhhCchhHH-HH---------
Confidence 99998876555555555 45444 99999999999999775 68999999999999999999884 44
Q ss_pred CCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcc-cCCCChHHH--HHHHHHHHHHHH-HHhhcC----
Q 001563 233 IPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRR-SLFTNDAAR--SKFLAHLMTGTK-EILQTG---- 304 (1052)
Q Consensus 233 ~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~-~~f~~~~~~--~~~l~~~l~~~~-~il~~~---- 304 (1052)
++.++++.+.+. ..|+.+..+++||++++++.+ +..+.+.+| .-+++.++.... ..++..
T Consensus 232 -----------TnIieLv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~ 299 (1053)
T COG5101 232 -----------TNIIELVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIY 299 (1053)
T ss_pred -----------HHHHHHHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHH
Confidence 568888888775 678899999999999999974 333322222 234444444332 112211
Q ss_pred -----cCCCCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhhccc-cccHHHHHHHHHHhhcccC
Q 001563 305 -----QGLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWA-SSSVYYLLGLWSRLVTSVP 378 (1052)
Q Consensus 305 -----~~l~~~e~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~-~~s~~~lL~~W~~lv~~~~ 378 (1052)
..-.++...+.++.+++.+.+.| ++.|..-+..+..++. .++. ++..... .|-|+.+|++|+++|.++
T Consensus 300 e~Y~~~~~neq~Fvq~LA~fL~s~~~~~-~~lLE~~e~~e~llna-h~YL---iqiSrInereiFkt~leyW~klVadL- 373 (1053)
T COG5101 300 EVYGGMDKNEQIFVQKLAQFLSSLYEVY-ISLLEAREMAENLLNA-HGYL---IQISRINEREIFKTALEYWNKLVADL- 373 (1053)
T ss_pred HHHcccChhHHHHHHHHHHHHHHHHHHH-HHHhcChhHHHHHHHH-HHHh---hhhhhccHHHHHHHHHHHHHHHHHHH-
Confidence 11123445566788888877777 4444432221111111 1121 3333332 478999999999999875
Q ss_pred ccC---------CC-------------Cc----------chhhhhHHHHHHHHHhccccccccc--cCCCCCCC------
Q 001563 379 YLK---------GD-------------AP----------SLLDEFVPKITEGFITSRFNSVQAG--FPDDLSDN------ 418 (1052)
Q Consensus 379 ~~~---------~~-------------~~----------~~l~~~~~~I~~~yi~~~l~~~~~~--~~~e~~e~------ 418 (1052)
|.+ ++ .| +.......++.-. +..+|..||++ +++|++|.
T Consensus 374 y~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlv-lienMvrPEEVliVendegEivRefvk 452 (1053)
T COG5101 374 YSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLV-LIENMVRPEEVLIVENDEGEIVREFVK 452 (1053)
T ss_pred HHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHH-HHHcCCCcceEEEEECCCcHHHHHHhc
Confidence 211 00 01 1112223455556 44556667776 34444432
Q ss_pred CCCcHHHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHhhcccccC
Q 001563 419 PLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTG 498 (1052)
Q Consensus 419 ~~~d~~~~~~~le~i~~l~r~~~~~t~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~ 498 (1052)
+.|-.+.++.+++++.+|+++...+|..+|+..+...++ +.+|+|+++| +|||+|+ ++.|.+
T Consensus 453 etDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~d-------g~EWsw~nlN----tLcWAIG---SISGam---- 514 (1053)
T COG5101 453 ETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLD-------GKEWSWNNLN----TLCWAIG---SISGAM---- 514 (1053)
T ss_pred cccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhc-------CCccchhhHh----HHHHHHh---cccchh----
Confidence 223335668999999999999999999999998887633 4677999998 9999996 444433
Q ss_pred CCcccccchhhhHHHHHHHHhhhccc-------ccccc--ccccccHHHHHHHHHHHHHHhhhHhhccccccchHHHHHH
Q 001563 499 CSLESQEVLDAELSARVLQLINVTDS-------GLHSQ--RYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYAR 569 (1052)
Q Consensus 499 ~~~~~~~~~d~~L~~~v~~l~~l~~~-------~~~~~--~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~ 569 (1052)
+|..+. .+++..+..|+.+|.. +.-++ +|.+|+|||+++|+|.|| +|+ .+|+|++
T Consensus 515 --sE~~Ek--rF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FL----kTV--------v~KLFEF 578 (1053)
T COG5101 515 --SEVNEK--RFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFL----KTV--------VKKLFEF 578 (1053)
T ss_pred --hhHHHH--HHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHH----HHH--------HHHHHHH
Confidence 334454 5678787777776633 22234 378999999999999999 787 5899999
Q ss_pred HHHHh-CCCChHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcccchhhHHhcchHHHHHHHhcccCCCCCcccc
Q 001563 570 LSELL-GLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEY 648 (1052)
Q Consensus 570 l~~~~-G~~~~~~~~~~~l~ki~~~l~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~ 648 (1052)
|+|.+ |++| |+||+|++++.+|..+|..+. .....|++++++++....+-+ |+ |
T Consensus 579 MhE~HEGvqD--MACDtFiKIvqKC~~hFv~Qq---------------------~gesEpFI~~Iirnl~ktT~d-L~-p 633 (1053)
T COG5101 579 MHEDHEGVQD--MACDTFIKIVQKCPVHFVTQQ---------------------EGESEPFIVYIIRNLPKTTGD-LE-P 633 (1053)
T ss_pred HhhhhhhHHh--hhHHHHHHHHHhCcHHHhhcC---------------------CCCCCcHHHHHHHhhhhhccc-CC-h
Confidence 99999 9999 899999999999998876322 345688999999998665544 32 3
Q ss_pred cccchhHHHHHHHHHHHhccC----ChHHHHHhhHHHHHHHHHhh----cCCCcccccHHHHHHHHHHHHHHhhHHhhhc
Q 001563 649 RCSRSRTTFYYTIGWLIFMEE----SPVKFKSSMDPLLQVFISLE----STPDSMFRTDAVKCALIGLMRDLRGIAMATN 720 (1052)
Q Consensus 649 ~~~~~r~~~y~al~~~~~~~~----~~~~~~~~l~p~~~~~~~l~----~~~~~~~~~~~~~~~l~~ll~~l~Gi~~a~~ 720 (1052)
.+.++||+|+|.++...+ +...+-.+|+-++..|..+. .++ ..+.|+++.+...+.+......|.+..
T Consensus 634 ---qQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~-~~L~d~~tvki~an~~ktnVa~ctslg 709 (1053)
T COG5101 634 ---QQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENI-NRLSDTMTVKIDANKMKTNVAKCTSLG 709 (1053)
T ss_pred ---HHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhcchhHHHHHHHHHHHHHHHHhhcc
Confidence 355899999999997654 34568899999999999985 222 456677777777777777766555554
Q ss_pred cchhHHHHHHHHhhcchHHHHHHhhcccCCCchHHHHHHHHHHHhhccccceeccCCCcchh-hhHHHHHHHHHHHHHhh
Q 001563 721 SRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGI-LLFREVSKLIVAYGSRV 799 (1052)
Q Consensus 721 ~~~~~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~-~lf~~~~~l~~~y~~~~ 799 (1052)
. .+||..-..+..++..|..-+-.+ ++.+...+ -|+-.....+|. .+.+++.+++.+|.++.
T Consensus 710 ~---------~fyPq~~~~y~~ml~ly~avs~~I-------s~~vaaeg-~iatktp~vrglrtiKkEIlkLv~tyIska 772 (1053)
T COG5101 710 Y---------RFYPQTCSSYCIMLFLYFAVSFDI-------SNSVAAEG-LIATKTPAVRGLRTIKKEILKLVATYISKA 772 (1053)
T ss_pred c---------ccchHHHHHHHHHHHHHHHHHHHH-------HHHHHhcc-cccccCccccchHHHHHHHHHHHHHHHhhh
Confidence 3 356665445555555553222211 22222221 133333455565 67777888888776421
Q ss_pred -----------------------ccCCCchhhHhhhhhhHHHHHHHHHHhhcCCCcccccccccCCCcHHHHHHHHHHhh
Q 001563 800 -----------------------LSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMT 856 (1052)
Q Consensus 800 -----------------------~~~~~~~~~~~~~~k~l~~~l~~l~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~~~ 856 (1052)
-++|..+ +++.+.....+.+-+.+.+. ...+-.+..+|.++
T Consensus 773 ~dl~~V~n~lv~~l~eaVl~DY~nNvPdar--daevLnl~ttiV~~v~~~i~--------------~~~~l~l~svf~ct 836 (1053)
T COG5101 773 RDLKFVQNDLVNMLCEAVLFDYKNNVPDAR--DAEVLNLGTTIVRNVESVIY--------------LQRELFLISVFICT 836 (1053)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCccc--cHHHHHHHHHHHHHHHHHhh--------------hhhHHHHHHHHhhh
Confidence 1345444 44555544444443333332 13566888999999
Q ss_pred cccChhhHhhhHhhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhcc
Q 001563 857 LSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITM 936 (1052)
Q Consensus 857 l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~ 936 (1052)
+.|...|+-+||+++++||.|++.+...++..+.++|++.|+.++.+|.|+++|.+++|+..+++++..+.+.+.. .
T Consensus 837 l~mi~kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~---m 913 (1053)
T COG5101 837 LIMIVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHE---M 913 (1053)
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHH---h
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888887753 1
Q ss_pred CCCCCChHHHHHHHHhhhCCCcHHHHHHHHHHHHhccCCCchhhchhhhHHH-----------------HhcCHHHHHHH
Q 001563 937 GEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSL-----------------ILISEQVFSDL 999 (1052)
Q Consensus 937 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~s~~L~~l-----------------i~~~~~~f~~l 999 (1052)
| .|....+ +.+.+...+..++-++++.|++.+++--..|++. |--+.-...++
T Consensus 914 g----~~~~n~F------~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~li~lv~dnkisVPlyd~~~~n~~~lsey 983 (1053)
T COG5101 914 G----VPFINQF------YAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDNKISVPLYDGINPNITILSEY 983 (1053)
T ss_pred C----CchHHHH------HHHHHHHHHHHHHeeeeccchhccchHHHHHHHHHHHHHhccccccccccCCCCchhhHHHH
Confidence 2 1444333 3455778888889889899998876544444332 22233344555
Q ss_pred HHHHHh-cCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001563 1000 KAQILT-SQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1050 (1052)
Q Consensus 1000 ~~~li~-~q~~~~~~~l~~af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1050 (1052)
...+.. +.|.--++.+..--..|.+- +. .-.-|+..+..|+..|.
T Consensus 984 i~~l~~~sfp~it~e~v~~f~~~l~~~-~~-----d~~ifk~~~~df~vkv~ 1029 (1053)
T COG5101 984 IVGLFVKSFPNITQESVKIFSVGLFEL-CG-----DDEIFKEHVEDFRVKVY 1029 (1053)
T ss_pred HHHHHHhhcCcccHHHHHHHHHHHHHH-hC-----cHHHHHHHHHHHhhhee
Confidence 544433 34433333333322222210 11 12467777888876654
No 3
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-53 Score=451.81 Aligned_cols=650 Identities=15% Similarity=0.137 Sum_probs=491.1
Q ss_pred HHHHHHH----HHH-hhcccCccCCCCcchhhhhHHHHHHHHHhcccccccc--------c-cCCCCC----CCCCCcHH
Q 001563 363 VYYLLGL----WSR-LVTSVPYLKGDAPSLLDEFVPKITEGFITSRFNSVQA--------G-FPDDLS----DNPLDNVE 424 (1052)
Q Consensus 363 ~~~lL~~----W~~-lv~~~~~~~~~~~~~l~~~~~~I~~~yi~~~l~~~~~--------~-~~~e~~----e~~~~d~~ 424 (1052)
++.||+- |-. ++.+. ..+-+....+..+..+|+..|+++|+..+.+ + .++|++ +..+||.+
T Consensus 8 ~d~Ll~s~~~~Wltnl~~~~-~~~f~~~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~~edd~D 86 (748)
T KOG4541|consen 8 CDVLLSSSHVGWLTNLYSSV-RQKFDLEGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTGVEDDID 86 (748)
T ss_pred HHHHHhcCCcchHHHHHhhH-HHHHhhhhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcCCCccCC
Confidence 4445555 654 55542 1111223566677889999999999987643 2 133321 23466666
Q ss_pred HHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHH----HH---hhcCCC---CcchhhHHHHHHHHHHHHHHHHhhcc
Q 001563 425 LLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYT----ER---ARMQTG---DKSEISVIEAKLAWIVHIIAAIVKIK 494 (1052)
Q Consensus 425 ~~~~~le~i~~l~r~~~~~t~~~l~~ll~~~~~~~~----~~---~~~~~~---~~~~l~~~~e~L~Wli~i~g~~l~~~ 494 (1052)
...+++...+..+|...+.|.+.. .+++....++. +. ....++ ....+.-+.|+.||++++.|.-+.|+
T Consensus 87 ~s~D~~~~~~~~gr~gae~c~~~~-~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~~~~~de 165 (748)
T KOG4541|consen 87 PSPDVISKEIEEGRSGAEMCDGCR-ALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLMANSTDE 165 (748)
T ss_pred cchhHHHHHHhcCchHHHHHHHHH-HHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 677888888999999998888776 66666543322 11 111121 12234567789999999999998765
Q ss_pred cccC---------------------------CC-cccccchh-------hh----HHHHHHHHhhhcccccccccccccc
Q 001563 495 QCTG---------------------------CS-LESQEVLD-------AE----LSARVLQLINVTDSGLHSQRYCELS 535 (1052)
Q Consensus 495 ~~~~---------------------------~~-~~~~~~~d-------~~----L~~~v~~l~~l~~~~~~~~~~~~~s 535 (1052)
...+ .+ +.++.+-+ .+ +.+.+++.-..+.....+..-..+|
T Consensus 166 e~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a~~~~l~S 245 (748)
T KOG4541|consen 166 ETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSAMDERLGS 245 (748)
T ss_pred ccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHHHHHhccC
Confidence 2110 00 11110000 00 1112233322222222211224567
Q ss_pred HHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHhCC------CChHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q 001563 536 KQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGL------HDHLLLLNVIVGKIATNLKCYTESQEVIDHTLS 609 (1052)
Q Consensus 536 ~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~------~~~~~~~~~~l~ki~~~l~~~~~~~~vi~~al~ 609 (1052)
|.+.+.+.||+.+|.++|.... ++.|..++..+|. ....+.+.++++|+..++..|.++++++.+|++
T Consensus 246 -p~l~~~l~rfl~a~~~~~~~~~-----~~~y~~~s~~~~tv~p~~te~s~~~~~~ii~kVla~lvn~~sE~~L~~Da~q 319 (748)
T KOG4541|consen 246 -PALIARLARFLDATIPFLAKLF-----SDHYARLSQGRGTVDPTETEESVYSLLLIIGKVLADLVNGESETALVPDALQ 319 (748)
T ss_pred -HHHHHHHHHHHHhhhhHHHHHh-----HHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHhcccchhhhhHHHHH
Confidence 5599999999999999997553 6799999877654 345789999999999999999999999999999
Q ss_pred HHHHHhcccchhhHHhcchHHHHHHHhcccCCCC--CcccccccchhHHHHHHHHHHHhc--c--CChHHHHHhhHHHHH
Q 001563 610 LFLELASGYMTGKLLLKLDTIKFIVANHTREHFP--FLEEYRCSRSRTTFYYTIGWLIFM--E--ESPVKFKSSMDPLLQ 683 (1052)
Q Consensus 610 Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~l~~~~~~~~r~~~y~al~~~~~~--~--~~~~~~~~~l~p~~~ 683 (1052)
++.+++.+.......+.++.|+.+.....+...+ ++. ++.|..++++|.+..++ + ...+++...++|+.+
T Consensus 320 ~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s----~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~LqpL~~ 395 (748)
T KOG4541|consen 320 SLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFS----PPLMEALMKALVLWGFAYLDLEEECNLGSNKLQPLPS 395 (748)
T ss_pred HHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccC----chHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccHH
Confidence 9999999988888899999999999887653322 333 34678999999987543 2 356799999999999
Q ss_pred HHHHhhcCCCcccccHHHHHHHHHHHHHHhhHHhhhccchhHHHHHHHHhhcchHHHHHHhhcccCCCchHHHHHHHHHH
Q 001563 684 VFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAE 763 (1052)
Q Consensus 684 ~~~~l~~~~~~~~~~~~~~~~l~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~~ 763 (1052)
||-...+++ ++.+++.+|+.-+.++.|++.|.+... ...+|++++-.. .-+..++..|...++++..|+..+.+
T Consensus 396 Rf~~~~nq~----~q~~~~~~Ii~~l~~~~g~a~a~q~d~-~~~Lf~fL~~~~-~~c~glm~s~~~~~~~v~~i~~~~vd 469 (748)
T KOG4541|consen 396 RFFTYFNQH----NQGKFVLDIIVRLSLTSGTAYAGQKDL-QRSLFQFLVLSA-YGCRGLMASNQYVKDLVAHITSSLVD 469 (748)
T ss_pred HHHHHhccc----chhhHHHHHHHHHHHhccccccccchh-HHHHHHHHHHHH-hhhhhHHHHhhccHHHHHHHHHHHHH
Confidence 999888665 566788899999999999999998754 799999999884 79999999999999999999999999
Q ss_pred HhhccccceeccCCCcchhhhHHHHHHHHHHHHHhhccCCC-chhhHhhhhhhHHHHHHHHHHhhcCCCccccccc-ccC
Q 001563 764 FVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPN-AADIYAYKYKGMWICFTILARALAGNYVNFGVFE-LYG 841 (1052)
Q Consensus 764 ~~~n~~~ri~f~~~s~~~~~lf~~~~~l~~~y~~~~~~~~~-~~~~~~~~~k~l~~~l~~l~~~l~~~~vnfg~~~-~y~ 841 (1052)
++.... +..+..+| .+.+|..|.++++.|+....+.+. ...+|+|++.++.+++++|+|.+++||++||.-. ..+
T Consensus 470 vs~k~~--~y~~~e~~-~~~ly~sclql~~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lskdF~~~s~e~~~~~ 546 (748)
T KOG4541|consen 470 VSNKSD--LYNLAEQP-DIILYVSCLQLERLYGAASATRPRTQRAIYEEGLSDLNLVLRLLENYLSKDFSSDSIETQSTN 546 (748)
T ss_pred hhhhhh--hhccccCh-hHHHHHHHHHHHHHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHHHhhhhhhcccccccccc
Confidence 988543 34444455 677999999999999986554442 3456999999999999999999999999998742 332
Q ss_pred CCcHHHHHHHHHHhhcccChhhHhhhHhhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcC-CChHHHhHHH
Q 001563 842 DRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKG-LDTNISSQCA 920 (1052)
Q Consensus 842 D~~~~~~~~~~l~~~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~-~~~~i~~~~~ 920 (1052)
. ..++...++++.+.++..++++|||+|.+||+++.+||+..|++++++|.+.++.++.|+..||+. ...+....|.
T Consensus 547 G--~a~VV~~gl~~ilplm~~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~ 624 (748)
T KOG4541|consen 547 G--IAQVVYFGLHIILPLMTLELLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDP 624 (748)
T ss_pred C--cceEEEeeHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccCh
Confidence 1 245667778888888889999999999999999999999999999999999999999999999994 4445555566
Q ss_pred HHHHHHHHHHHHhhccCCCCCChHHHHHHHHhhhCCCcHHHHHHHHHHHHhccCCCchh--hchhhhHHHHhcCHHHHHH
Q 001563 921 AAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQW--SLSRPMLSLILISEQVFSD 998 (1052)
Q Consensus 921 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~--~~s~~L~~li~~~~~~f~~ 998 (1052)
+.+-++++-.-|.++ .++++ ++ +.++|+++|+++++++|+++. .+++|||+||||+|..|++
T Consensus 625 e~v~hfgspankgrc---------Tqnla-fL------~~efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y~e 688 (748)
T KOG4541|consen 625 EGVFHFGSPANKGRC---------TQNLA-FL------SREFLRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLYQE 688 (748)
T ss_pred Hhhhccccccccccc---------cccHH-HH------HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHHHH
Confidence 666555554432221 12232 22 456899999999999999987 7799999999999999999
Q ss_pred HHHHHHhcCC-hhhHHHHHHHHHHHHh-hhhcccChhhHHHHHHHHHHHHHHhhc
Q 001563 999 LKAQILTSQP-VDQHQRLSVCFDKLMA-DVARSLDSKNRDKFTQNLTVFRHEFRV 1051 (1052)
Q Consensus 999 l~~~li~~q~-~~~~~~l~~af~~L~~-~i~~~l~~~nr~~F~~nl~~F~~~vr~ 1051 (1052)
++++|+++|. |..++||+.||++||. +-.+++||+||.+|++|+..|+.+|-|
T Consensus 689 lvneL~skq~np~~~qrLa~Af~~Lt~sn~~psldR~~~~~Frk~le~Fl~~V~G 743 (748)
T KOG4541|consen 689 LVNELISKQANPNFKQRLANAFQVLTTSNQLPSLDRLNYQRFRKNLENFLVEVLG 743 (748)
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHhhc
Confidence 9999999988 9999999999999999 556669999999999999999999865
No 4
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-43 Score=427.40 Aligned_cols=792 Identities=16% Similarity=0.205 Sum_probs=545.3
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 001563 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1052)
Q Consensus 3 ~l~~le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~l 80 (1052)
+.+.+++++..++.-+++++|.+|++++.+|+..|+.|..|..||+.++++.++|||++.|++.|+. +.+|.++|.++
T Consensus 9 ~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~gl 88 (1041)
T KOG2020|consen 9 DSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGL 88 (1041)
T ss_pred HHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHH
Confidence 3556777777776547789999999999999999999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcc--CchhHHHHHHHHHHHHHh
Q 001563 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQA--TSDHYAIGLKILNQLVSE 153 (1052)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~--~~~~~~~gl~lL~~lv~E 153 (1052)
|+|+...+...+++. .+++++|++.+++.|+||+||..|| +|+.++.+.+..+ ..++.++.+++|++.|++
T Consensus 89 k~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp--~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~ 166 (1041)
T KOG2020|consen 89 KNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWP--TFIPDLAQSSKTSETVCELSMIILLLLSEEVFD 166 (1041)
T ss_pred HHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcc--hhhhhHHHHhhcCcccchHHHHHHHHHHHHHhc
Confidence 999999999887766 5899999999999999999999998 8999998887432 246889999999999999
Q ss_pred ccCCCCCcchHHhHhhhhhccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccCccCCCCCCccccccccC
Q 001563 154 MNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQI 233 (1052)
Q Consensus 154 f~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~ 233 (1052)
|++..+......|.+. ..+. .+..||++|..++.++.. . ++.++|..+..+++|++.|+. .+
T Consensus 167 ~ss~~~~q~~~~il~~--~~~~-~f~~i~~l~~~~~~~a~~---~-~~~atl~tl~~fl~wip~~~I-~~---------- 228 (1041)
T KOG2020|consen 167 FSSSELTQQKIIILKN--LLEN-EFQQIFTLCSYIKEKANS---E-LLSATLETLLRFLEWIPLGYI-FE---------- 228 (1041)
T ss_pred ccchHHHhhhHHHHHH--HhhH-HHHHHHHHHHHHHhhhhh---H-HHHHHHHHHHHHhhcccHHHH-HH----------
Confidence 9998865555555555 3444 599999999998887655 3 999999999999999999885 33
Q ss_pred CCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHH---hhcC---cCC
Q 001563 234 PSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEI---LQTG---QGL 307 (1052)
Q Consensus 234 p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~i---l~~~---~~l 307 (1052)
.+.+..+...+. ..|.++..+++||.++++..++.+ +.....++...+..+..+ +..+ .+.
T Consensus 229 ----------tn~l~~~l~~~l-n~~~~r~~al~CL~ei~s~~~~~~--~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~ 295 (1041)
T KOG2020|consen 229 ----------TNILELLLNKFL-NAPELRNNALSCLTELLSRKRSIY--ERKTVPMFNLTIYQLRSIPQDLDIPEVYSSL 295 (1041)
T ss_pred ----------hhhHHHHHHhcc-chHHHHHHHHHHHHHHHhccccch--hHHhHHHHHHHHHHHHHhhhhhchhhhhhcc
Confidence 234555555542 568899999999999999987754 233345555555553322 2111 111
Q ss_pred --CCc-hhHHHHHHHHhhhhhhcchhhhhcc-cChHHHHHHHHHHHHHhhhhhc-cccccHHHHHHHHHHhhcccCccC-
Q 001563 308 --ADH-DNYHEYCRLLGRFRVNYQLSELVNV-EGYSDWIQLVAEFTLKSLQSWQ-WASSSVYYLLGLWSRLVTSVPYLK- 381 (1052)
Q Consensus 308 --~~~-e~~~~~~~~l~rl~~~~~l~~l~~~-~~~~~~l~~l~~~T~~~l~~~~-~~~~s~~~lL~~W~~lv~~~~~~~- 381 (1052)
.++ .....++.+++.|...| ..-+... ...+..+.. +..++.... ...+.+..|+++|..++.+..|.+
T Consensus 296 ~~~dq~~fi~~l~~~l~~f~~~~-~~lle~~~~~~~~~~~~----~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~~~ 370 (1041)
T KOG2020|consen 296 SDEDQDSFIEKLAQFLSLFFEQH-IALLESSLSQRPVLLEA----LLELILISTIEPSEIFKICLDYWNKLVADLYYNKP 370 (1041)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHH-HHHHcCchhhhhHHHHH----HHHHHHHhccCchhHHHHHHHHHHHHHHhhhcccc
Confidence 223 23344788888888777 3333331 111222222 223333333 335778889999999999876631
Q ss_pred ----CCCc--------------chhhhhHHHHHHHHHhcccccccccc--CCCCCC---CCCCcH---HHHHHHHhhhhh
Q 001563 382 ----GDAP--------------SLLDEFVPKITEGFITSRFNSVQAGF--PDDLSD---NPLDNV---ELLQDQLDCFPY 435 (1052)
Q Consensus 382 ----~~~~--------------~~l~~~~~~I~~~yi~~~l~~~~~~~--~~e~~e---~~~~d~---~~~~~~le~i~~ 435 (1052)
...+ +....+..+.. .....+|.+|++++ ++|.++ +...|. ..+...++...+
T Consensus 371 ~ll~~s~~~~~~~~~~ri~~rk~~y~~~~~~~r-~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~ 449 (1041)
T KOG2020|consen 371 PLLQLSTTLPSISDYSRIDFRKSIYQEFLSKLR-LLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVY 449 (1041)
T ss_pred cccccccccccccchhccchHHHHHHHHHHHHH-HHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHH
Confidence 0000 00011112222 22556677777653 333221 122233 244688999999
Q ss_pred hhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHH-HHHHHhhcccccCCCcccccchhhhHHHH
Q 001563 436 LCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVH-IIAAIVKIKQCTGCSLESQEVLDAELSAR 514 (1052)
Q Consensus 436 l~r~~~~~t~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~-i~g~~l~~~~~~~~~~~~~~~~d~~L~~~ 514 (1052)
++.++..++..++...+...++. . .+++..++ ++||.|+ ++|+++. +.....++.+
T Consensus 450 ~~~L~~~~t~~~~~~kl~~~l~~----~---~~~~~~ln----~l~~ai~sisg~~~e------------~~e~k~~~~v 506 (1041)
T KOG2020|consen 450 LLHLDVVDTEKIMTEKLAIQLDG----D---EWSLHNLN----RLCWAIGSISGRMLE------------DMEKKFFVAV 506 (1041)
T ss_pred HHHhhhhhhhhhhhHhHHHHhhH----H---HHhhhhhh----hHHHHHHHHHhhhHH------------HHHHHHHHHH
Confidence 99999999999999987766443 1 22555565 8999995 6665554 2222457777
Q ss_pred HHHHhhhccccccc-------c--ccccccHHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHh-CCCChHHHHH
Q 001563 515 VLQLINVTDSGLHS-------Q--RYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELL-GLHDHLLLLN 584 (1052)
Q Consensus 515 v~~l~~l~~~~~~~-------~--~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~-G~~~~~~~~~ 584 (1052)
+.++++++...... + +|.++.+|||.+++|.|| +++ ..+++++|++.+ |++| |.||
T Consensus 507 ~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~~~L----kt~--------~~~L~efmhe~h~gvqd--macd 572 (1041)
T KOG2020|consen 507 IRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFL----KTV--------VHKLFEFMHETHEGVQD--MACD 572 (1041)
T ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHHHHH----HHH--------HHHHHHHHhhhhHHHHh--hhHH
Confidence 87887776543322 1 145668999999999998 666 478999999999 8898 8999
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHHHHHhcccchhhHHhcchHHHHHHHhcccCCCCCcccccccchhHHHHHHHHHH
Q 001563 585 VIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWL 664 (1052)
Q Consensus 585 ~~l~ki~~~l~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~y~al~~~ 664 (1052)
+|++++.+|+.+|.- .......|.+..++.+.+....++- +.+|+.+|++++.+
T Consensus 573 ~F~~ii~~~~~~fv~---------------------~~~~e~~~fv~~~~~~l~~i~~~l~-----~~q~~~~~~al~~~ 626 (1041)
T KOG2020|consen 573 TFIKIIQKCKRHFVI---------------------TQLGETKPFVGELLLNLTAITEDLQ-----PQQRHTFYEALGLM 626 (1041)
T ss_pred HHHHHHHhhhhhhee---------------------ecccccccchHHHhhcccchhcCch-----HHHHHHHHHHHHHH
Confidence 999999999998741 2234456677777777654333321 45889999999965
Q ss_pred Hhcc----CChHHHHHhhHHHHHHHHHhhcCC---CcccccHHHHHHHHHHHHHHhhHHhhhccchhHHHHHHHHhhcch
Q 001563 665 IFME----ESPVKFKSSMDPLLQVFISLESTP---DSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHM 737 (1052)
Q Consensus 665 ~~~~----~~~~~~~~~l~p~~~~~~~l~~~~---~~~~~~~~~~~~l~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~ 737 (1052)
+..+ ...++..++|.-.+..|..++.++ ...+..++....+..++..+..++.+..+ +|....+.++
T Consensus 627 V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~--~f~~~~~~~~---- 700 (1041)
T KOG2020|consen 627 VSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGS--TFVPQLGKIY---- 700 (1041)
T ss_pred HHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCc--cccccccccc----
Confidence 5433 234678888888899999976333 35666777666677777766666665544 2333333333
Q ss_pred HHHHHHhhcccCCCchHHHHHHHHHHHhhccccceeccCCCcc--hh-hhHHHHHHHHHHHHHh----------------
Q 001563 738 PLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPN--GI-LLFREVSKLIVAYGSR---------------- 798 (1052)
Q Consensus 738 ~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~f~~~s~~--~~-~lf~~~~~l~~~y~~~---------------- 798 (1052)
.+.++.|+.++..+.. .+.+. ..+.+..|. +. .+.+++.+.+.+|+..
T Consensus 701 ---~d~~~l~~~~s~~v~~-------~~~~~---~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1041)
T KOG2020|consen 701 ---LDMLQLYIKQSELVSI-------NVTAG---GSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLL 767 (1041)
T ss_pred ---HHHHHHHHHhcccccH-------HHhcc---cccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHH
Confidence 3444444444432211 11100 000000010 11 2333333333333211
Q ss_pred -------hccCCCchhhHhhhhhhHHHHHHHHHHhhcCCCcccccccccCCCcHHHHHHHHHHhhcccChhhHhhhHhhH
Q 001563 799 -------VLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLT 871 (1052)
Q Consensus 799 -------~~~~~~~~~~~~~~~k~l~~~l~~l~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~~~l~ip~~dl~~yPkl~ 871 (1052)
..++|..+ ...+..+..++.+.+++ ++. ..++.+...++++.+.|...|+..||+++
T Consensus 768 ~~~~fd~~~nvPd~r------~~~vl~l~~~iv~~Lg~-~i~---------~~~~~i~~~v~~c~l~m~~~d~qe~~e~~ 831 (1041)
T KOG2020|consen 768 DAVLFDYLDNVPDYR------ENEVLSLNATIVPKLGE-FIP---------AELPLINIAVLECTLEMINKDFQEYPEHR 831 (1041)
T ss_pred HHHHHHHHccCcchh------cchHHHhhhhhhhhhhh-Hhh---------hhccHHHHHHHhhhhhccccccccchHHH
Confidence 11343322 22333445555554432 221 23457788999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHH
Q 001563 872 KAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYF 931 (1052)
Q Consensus 872 ~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~ 931 (1052)
..||.++++++..++..+.++|++.++.+++++.|.++|..++|+..++.++..+...+.
T Consensus 832 ~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~ 891 (1041)
T KOG2020|consen 832 LNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLA 891 (1041)
T ss_pred HHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988888877664
No 5
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.6e-15 Score=174.63 Aligned_cols=906 Identities=12% Similarity=0.099 Sum_probs=473.5
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 001563 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1052)
Q Consensus 3 ~l~~le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~l 80 (1052)
.|+++|.++..+|.++.++..+.++++|...+.+|++|...+++|+..+++.+|||+|.+|+..|++ ...|++++.++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL 84 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQL 84 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHH
Confidence 4899999999999998888999999999999999999999999999999999999999999999986 89999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc-cCc-----hhHHHHHHHHHHHHHhc
Q 001563 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ-ATS-----DHYAIGLKILNQLVSEM 154 (1052)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~-~~~-----~~~~~gl~lL~~lv~Ef 154 (1052)
+.-++.-+... ...++.|.+|++..+|.+.-.--+|.|| .-+.++...+.. .++ -+|.+-++.|+.+..||
T Consensus 85 ~~klf~~l~~~-~g~~~lVl~kl~~sLasl~l~~~~d~Wp--~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~ 161 (982)
T KOG2022|consen 85 KLKLFLILSRF-AGGPKLVLNKLCASLASLILYMVPDLWP--TAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEF 161 (982)
T ss_pred HHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHccccCC--chHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhh
Confidence 99999988877 4559999999999999988877788877 567888776642 122 37899999999999999
Q ss_pred cCCCCCcchHHhHhhhhhccccchHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHhHhccccC-ccCCCCCCccccc
Q 001563 155 NQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVAS----RLQELALSLCLKCLSFDF-VGTSIDESSEEFG 229 (1052)
Q Consensus 155 ~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~----~l~~~~L~l~~~~Lsw~f-~~~~~de~~~~~~ 229 (1052)
+-.++.++...-.|...+++.+ .++.+.-.+|+........ .....+++|... |+- ++...-+.
T Consensus 162 q~~~l~~t~~~~l~~eLak~~~---~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~---Wi~~i~~~~~~c----- 230 (982)
T KOG2022|consen 162 QHVTLPLTRRSVLRGELAKFSE---NVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQ---WIRYISLTGMDC----- 230 (982)
T ss_pred hhccchhHHHHHHHHHHHHHHH---HHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHH---HHHHhccccccH-----
Confidence 8766544443333333333222 2222222223222110011 122234444332 544 22110000
Q ss_pred cccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCCCCh-----------HHHHHHHH------H
Q 001563 230 TVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTND-----------AARSKFLA------H 292 (1052)
Q Consensus 230 ~~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~-----------~~~~~~l~------~ 292 (1052)
....+.+++.......+.-+.+=+|++- -++++.++ ++-..|-+ .
T Consensus 231 --------------~~i~~~ll~~l~~s~~~~~~a~~~cmt~----~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~ 292 (982)
T KOG2022|consen 231 --------------DQITQVLLDVLGQSTEGSYEAAEKCMTI----FGNVLADDTLLASVNDIIQPDCEFYRNTITLLIS 292 (982)
T ss_pred --------------HHHHHHHHHHHhhhccccccchhhhccc----chhhhccchHHHHHHHhcChHHHhccchHHHHHH
Confidence 1122233332211111111111111110 01111110 11111111 1
Q ss_pred HHHHHHH-H---hhcCcCC-CCchhHHHHHHHHhhhhhhcchhhhhcccC--hHHHHHHHHHHHHHhhhhhccc--cccH
Q 001563 293 LMTGTKE-I---LQTGQGL-ADHDNYHEYCRLLGRFRVNYQLSELVNVEG--YSDWIQLVAEFTLKSLQSWQWA--SSSV 363 (1052)
Q Consensus 293 ~l~~~~~-i---l~~~~~l-~~~e~~~~~~~~l~rl~~~~~l~~l~~~~~--~~~~l~~l~~~T~~~l~~~~~~--~~s~ 363 (1052)
+..|... + ++...+. +.+|+.++|+++...+..||...-+..... -.+.+..+.+....+...++.. +|.+
T Consensus 293 i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~ 372 (982)
T KOG2022|consen 293 ICLGILQEVSGKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIV 372 (982)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHH
Confidence 2222111 0 1111111 126788899999999999996655554421 1222333344445555555544 2444
Q ss_pred H-HHHHHHHHhhcccCccCCCC-cchhhhhHHHHHHHHHhccccccccccCCCCCCCCCCcHHHHHHHHhhhhhhhccch
Q 001563 364 Y-YLLGLWSRLVTSVPYLKGDA-PSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQY 441 (1052)
Q Consensus 364 ~-~lL~~W~~lv~~~~~~~~~~-~~~l~~~~~~I~~~yi~~~l~~~~~~~~~e~~e~~~~d~~~~~~~le~i~~l~r~~~ 441 (1052)
. ..++||..|.+++....++. ++.-..+..+|+..-++--+.+.+--..+...+++.++++.++..+.-++-+.-..|
T Consensus 373 S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y 452 (982)
T KOG2022|consen 373 SDRTLIFWYTLQDEIMQTINETQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSY 452 (982)
T ss_pred hHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4 47999999998753322221 233333443444443333233321111233346788888877766666665555555
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHhhcccccCCCcccccchhhhHHHHHHHHhhh
Q 001563 442 ENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINV 521 (1052)
Q Consensus 442 ~~t~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l 521 (1052)
+-...-++..+...+.+. ...++.++..++..| -.++-.-++....+ ......+-++++.
T Consensus 453 ~ilgd~ll~~L~~~l~q~---~aa~d~~p~s~~~tE----aci~~~~sva~~~~-------------~t~~~~i~rl~~~ 512 (982)
T KOG2022|consen 453 SILGDGLLDFLIDTLEQA---LAAGDEDPDSLNRTE----ACIFQFQSVAEYLG-------------ETESTWIPRLFET 512 (982)
T ss_pred HHHhHHHHHHHHHHHHHh---hhccCCCchHHHHHH----HHHHHHHHHHhhcC-------------cchhHHHHHHHHh
Confidence 544444444443333332 222344555454333 22221112222111 1122234444443
Q ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCCCch
Q 001563 522 TDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQ 601 (1052)
Q Consensus 522 ~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~l~ki~~~l~~~~~~~ 601 (1052)
+-. +.. ... +|.+.++..--+.... -|++++++ .++.-+...+..|. ..
T Consensus 513 ~as-ik~---S~~-n~ql~~Tss~~igs~s-~~l~e~P~---------------------~ln~sl~~L~~~Lh----~s 561 (982)
T KOG2022|consen 513 SAS-IKL---SAP-NPQLLSTSSDLIGSLS-NWLGEHPM---------------------YLNPSLPLLFQGLH----NS 561 (982)
T ss_pred ccc-ccc---ccC-ChhHHHHHHHHHHHHH-HHHhcCCc---------------------ccCchHHHHHHHhc----Cc
Confidence 211 111 111 3556555443332222 22333322 11111222222221 11
Q ss_pred hHHHHHHHHHHHHhcccchhhHHhcchHHHHHHHhcccCCCCCcccccccchhHHHHHHHHHHHhc---cCChHHHHHhh
Q 001563 602 EVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFM---EESPVKFKSSM 678 (1052)
Q Consensus 602 ~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~y~al~~~~~~---~~~~~~~~~~l 678 (1052)
+.-.+++.-+..+++ .|+.-. .|....+++. +.+.++-.+ .+ ...|..+|+++|.++.- |+...|+.+++
T Consensus 562 k~s~q~i~tl~tlC~---~C~~~L-~py~d~~~a~-~~e~l~~~~-~~-~S~~~klm~sIGyvls~~~pEe~~kyl~~li 634 (982)
T KOG2022|consen 562 KESEQAISTLKTLCE---TCPESL-DPYADQFSAV-CYEVLNKSN-AK-DSDRLKLMKSIGYVLSRLKPEEIPKYLMKLI 634 (982)
T ss_pred hHHHHHHHHHHHHHH---hhhhhC-chHHHHHHHH-HHHHhcccc-cC-chHHHHHHHHHHHHHHhccHHhHHHHHHHHH
Confidence 111122222444444 222111 1111122211 111111011 11 23778999999998732 34566888888
Q ss_pred HHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHhhHHhhhccchh--------HH-------HHHHHHhhcchHHHHHH
Q 001563 679 DPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRT--------YG-------LLFDWLYPAHMPLLLKG 743 (1052)
Q Consensus 679 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~l~Gi~~a~~~~~~--------~~-------~lf~~i~p~~~~~~~~l 743 (1052)
.|+-..++.... +..++++.+..++..+-++...+.+...+.. .+ +........ ++++-++
T Consensus 635 n~il~qle~~l~---~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~-i~~~~kv 710 (982)
T KOG2022|consen 635 NPILSQLEINLA---PGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKA-IPVFEKV 710 (982)
T ss_pred HHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHH-HHHHHHH
Confidence 887766665432 2467777777777777777777766654311 11 333333333 5777788
Q ss_pred hhcccCCCchHHHHHHHHHHHhhccccceeccCCCcchhhhHHHHHHHHHHHHHhhccCCCchhhHhhhhhhHHHHHHHH
Q 001563 744 ISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTIL 823 (1052)
Q Consensus 744 ~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~~lf~~~~~l~~~y~~~~~~~~~~~~~~~~~~k~l~~~l~~l 823 (1052)
.+.|-++++|+....+-+.--+.+- +=.|. .| ....+.-.+.+|. +.+. ...+.+.
T Consensus 711 ~s~~~~~s~vve~~C~i~~~~v~~~--~~sF~--~p----~l~~l~~Fi~r~~----~~~~------------a~tl~l~ 766 (982)
T KOG2022|consen 711 LSMWLGLSDVVEASCIIMVKGVRSL--LTSFP--EP----MLPSLCPFIVRFL----TSCL------------AVTLSLI 766 (982)
T ss_pred HHHHhcchhHHHHHHHHHHhccccc--cccch--hh----hHHHHHHHHHHhc----cchH------------HHHHHHH
Confidence 8889999999988766665443321 11121 11 1111112222221 1110 0111222
Q ss_pred HHhhcCCCcccccccccCCCcHHHHHHHHHH-hhcccChhhHhhhHhhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHH
Q 001563 824 ARALAGNYVNFGVFELYGDRALSDALDIALK-MTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVG 902 (1052)
Q Consensus 824 ~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~-~~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~ 902 (1052)
..++.-.+..-+. -+-+..-+..+++ ..+..--.-|..-|+.-..+|-+++.+.+.+|.++... ...|..++-
T Consensus 767 ~~~l~~~~~~~~~-----~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~-~~~~ts~i~ 840 (982)
T KOG2022|consen 767 AACLLAKSTVEQC-----KPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPS-MLAFTSLIL 840 (982)
T ss_pred HHHHHhhhccccc-----cccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccc-hHHHHHHHH
Confidence 2222111111111 0223333444444 22222223478889999999999999999999765532 345666666
Q ss_pred -HHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHhhh-CCCcHHHHHHHHHHHHhccCCCchh-
Q 001563 903 -SLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVE-CPTLFPEILKTLFEIVLFEDCGNQW- 979 (1052)
Q Consensus 903 -sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~ll~~~~~~~~- 979 (1052)
+-..++++.++.-++.+++.+.+++++.+.+.- .. ..+.+.+ ++. ++..+|.-+-.+-.+++.
T Consensus 841 ~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~------~t----v~~~V~~~G~~----Li~~im~~vgg~~~RS~ld 906 (982)
T KOG2022|consen 841 ICAFILLNSPEPTTIRAASQFLTALATYATSHDL------VT----VTSVVAEIGPI----LIYAIMRGVGGEASRSTLD 906 (982)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhhcccchh------HH----HHHHHHhcchH----HHHHHHHHhcCcCccchhH
Confidence 778899999988888888999998887754210 01 1111111 222 245555555455545554
Q ss_pred hchhhhHHHHhcCHHHHHHHHHHHHhcCC-h--hhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhhc
Q 001563 980 SLSRPMLSLILISEQVFSDLKAQILTSQP-V--DQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFRV 1051 (1052)
Q Consensus 980 ~~s~~L~~li~~~~~~f~~l~~~li~~q~-~--~~~~~l~~af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr~ 1051 (1052)
+.++.|+++-.=++..-..+..+.++.-. | ..-......|-+.+- . +|-||++|.+-+..|--+.|+
T Consensus 907 ~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~ll---r--er~n~R~~k~~il~~~L~~~~ 976 (982)
T KOG2022|consen 907 ALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLL---R--ERGNKRNFKQQILEFNLACTG 976 (982)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHH---H--HHhcHHHHHHHHHHHHHHhcC
Confidence 67888888865555554455455552211 3 112444555544432 2 567788888888877666554
No 6
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.80 E-value=5.7e-18 Score=186.99 Aligned_cols=250 Identities=16% Similarity=0.275 Sum_probs=174.3
Q ss_pred HHHHHHHHHHhhccccceeccCCCcchh---hhHHHHHHHHHHHHHhhccCCCchhhHhhhhhhHHHHHHHHHHhhcCCC
Q 001563 755 TPLLKFMAEFVLNKAQRLTFDSSSPNGI---LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNY 831 (1052)
Q Consensus 755 ~~iLkl~~~~~~n~~~ri~f~~~s~~~~---~lf~~~~~l~~~y~~~~~~~~~~~~~~~~~~k~l~~~l~~l~~~l~~~~ 831 (1052)
..|||++..++++.. .++.+ ++-..+..++..|.+. .|..+ ++|.+. +++.+.+.+.+.+
T Consensus 45 keIL~Li~t~i~~~~--------~~~~v~~~~i~~l~~~vL~DY~~~---~p~~r--~~evL~----l~~~ii~kl~~~~ 107 (319)
T PF08767_consen 45 KEILKLIETFISKAE--------DPEEVANNFIPPLLDAVLGDYQNS---VPDAR--EPEVLS----LMATIINKLGELI 107 (319)
T ss_dssp HHHHHHHHHHHHT-S---------HHHHHHHTHHHHHHHHHHHHHHS----GGGS---HHHHH----HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhccC--------CHHHHHHHHHHHHHHHHHHHHhcC---Ccccc--ChhHHH----HHHHHHHHHHHhh
Confidence 578888888888431 22222 3444456677788753 44445 556666 4555555555432
Q ss_pred cccccccccCCCcHHHHHHHHHHhhcccChhhHhhhHhhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcCC
Q 001563 832 VNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGL 911 (1052)
Q Consensus 832 vnfg~~~~y~D~~~~~~~~~~l~~~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~ 911 (1052)
.+.++.+++.++++++.|+.+|+.+||++|.+||+||+++++.||+.+.++|++.|+.+++++.||++|.
T Consensus 108 ----------~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~ 177 (319)
T PF08767_consen 108 ----------QPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT 177 (319)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHhhhCCCcHHHHHHHHHHHHhccCCCchhhc-hhhhHHHHh
Q 001563 912 DTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSL-SRPMLSLIL 990 (1052)
Q Consensus 912 ~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~-s~~L~~li~ 990 (1052)
+++|+..|++++..+++++.+ .+ .+.++.+ .++++..+++.+|.++++.+|+.+|.. +..|..|+.
T Consensus 178 ~~~I~~~~L~~l~~ll~~~~~----~~---~~~~~~F------~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 178 NREISETGLNILLELLNNVSK----TN---PEFANQF------YQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-----S---HHHHHHH------HHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHh----cC---HHHHHHH------HHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 11 1333333 235688999999999999999998844 455555553
Q ss_pred c----------------CHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001563 991 I----------------SEQVFSDLKAQILT-SQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1050 (1052)
Q Consensus 991 ~----------------~~~~f~~l~~~li~-~q~~~~~~~l~~af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1050 (1052)
+ +.++-.+...+++. .-|.-.++.+...-..|.+ ...++.+|+..+..|+-.+|
T Consensus 245 ~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~------~~~d~~~Fk~~lrDFlI~~k 315 (319)
T PF08767_consen 245 LVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFE------LNNDPEKFKTHLRDFLIQLK 315 (319)
T ss_dssp HHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------TTT-HHHHHHHHHHHHHHHT
T ss_pred HHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH------hcCCHHHHHHHHHHHhhhhh
Confidence 2 12222233322222 3343333344433344432 12358999999999998887
No 7
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.8e-13 Score=154.62 Aligned_cols=261 Identities=15% Similarity=0.176 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHhhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh--cCCCHHHHHH
Q 001563 4 LAQLEALCERLYNS-QDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE--HSLALQLRLD 79 (1052)
Q Consensus 4 l~~le~~~~~ly~~-~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~ 79 (1052)
++.+|+++.+...| .|++.|++|-+.+.+.+++|++|+.|-.+|-++ +++.++|+++++|.+.++. ++.+..+..-
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 45689999998877 588999999999999999999999999999887 8999999999999999996 7788898888
Q ss_pred HHHHHHHHHHhcC-----CCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCc-hhHHHHHHHHHHHHHh
Q 001563 80 IRNYLINYLAKRG-----PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATS-DHYAIGLKILNQLVSE 153 (1052)
Q Consensus 80 lr~~ll~~l~~~~-----~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~-~~~~~gl~lL~~lv~E 153 (1052)
+|.-+..|+.... ...|.|+.||+.++++.+.-..+|+.|+ +|..++...+..++. +..-.-|++|.++=+|
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~Wn--sfF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWN--SFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 9988888886331 2468999999999999999999999998 899998887743221 2355667788888888
Q ss_pred ccCCCCCcchHHhHhh---hhhccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccCccCCCCCCcccccc
Q 001563 154 MNQPNPGLPSTHHRRV---ACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (1052)
Q Consensus 154 f~~~~~~~~~~~h~k~---~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~ 230 (1052)
....+.-.+.+..+|. |-.+|+.+.++|-..-.++++.-.....+.+...+|+++-+..||+=++-.
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLI---------- 229 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLI---------- 229 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhh----------
Confidence 7766655666666664 558999999999999888887654321246888999999999999766553
Q ss_pred ccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCCCChHHHHHHHHHH
Q 001563 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHL 293 (1052)
Q Consensus 231 ~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~ 293 (1052)
.++.+++++++... -.+++..|-.|+.++.|-+- .+-++..+++.+
T Consensus 230 -----------aNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkM----kP~dKL~lln~L 275 (980)
T KOG2021|consen 230 -----------ANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKM----KPMDKLALLNML 275 (980)
T ss_pred -----------hchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCC----ChhHHHHHHHHH
Confidence 34568999988763 46799999999999999772 134677777665
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3.7e-07 Score=110.43 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 001563 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1052)
Q Consensus 3 ~l~~le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~l 80 (1052)
+.+.|+++...+.+| |++.|++||+.|...-..+...+...+|+..++++.++-+|+-.+++++.+ +.++.+.|.+|
T Consensus 2 ~~~~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLLSP-DNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred chhHHHHHHHHhcCC-CchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 457899999998865 468899999999855444559999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCC
Q 001563 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQP 157 (1052)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~ 157 (1052)
|.-+|.-+.+- ..+-|+.|++.++|.|.|-.-++.|| +.++-+.+..++.++..+..++.||+.++..|...
T Consensus 81 ks~lL~~~~~E---~~~~vr~k~~dviAeia~~~l~e~WP--ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 81 KSSLLEIIQSE---TEPSVRHKLADVIAEIARNDLPEKWP--ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccchH--HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc
Confidence 99999988753 35679999999999999999888887 66777777776667788999999999999888653
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.3e-06 Score=99.12 Aligned_cols=807 Identities=17% Similarity=0.202 Sum_probs=396.8
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhh--cCCCHHHHHH
Q 001563 6 QLEALCERLYNS--QDSVERAHAENTLKCFSVNTDYISQCQFILDNALT--PYALMLASSSLLKQVTE--HSLALQLRLD 79 (1052)
Q Consensus 6 ~le~~~~~ly~~--~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~--~~~~f~a~~~L~~~i~~--~~l~~~~r~~ 79 (1052)
.|.++++.+-++ |+.+.|+.+...+.+|...||.-....+||-+.++ .-++=-|.-.|++-++- +.++++...-
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y 90 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY 90 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence 355666555543 46688999999999999999998888999987654 44555555567777764 7777766655
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHh----cc
Q 001563 80 IRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSE----MN 155 (1052)
Q Consensus 80 lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~E----f~ 155 (1052)
+|.-+++=+ -+.++.+++-.-.++-.|+-.+-..+|| +..+.+++.+.+.+.+++.=++.-|+-+.++ +.
T Consensus 91 iKs~~l~~l----gd~~~lIr~tvGivITTI~s~~~~~~wp--elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 91 IKSECLHGL----GDASPLIRATVGIVITTIASTGGLQHWP--ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred HHHHHHhhc----cCchHHHHhhhhheeeeeecccccccch--hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 666555544 3445566666666666666665566666 7788888888654445555555555555544 22
Q ss_pred CCCCCcchHHhHhhhhhccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccCccCCCCCCccccccccCCC
Q 001563 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPS 235 (1052)
Q Consensus 156 ~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~ 235 (1052)
+.-.+.+.. --+++++++. +. .+ +++-..++.|+..++ ...+-
T Consensus 165 s~~~~rpl~-----------~mipkfl~f~----~h---~s-pkiRs~A~~cvNq~i---~~~~q--------------- 207 (885)
T KOG2023|consen 165 SDVLTRPLN-----------IMIPKFLQFF----KH---PS-PKIRSHAVGCVNQFI---IIQTQ--------------- 207 (885)
T ss_pred hhcccCchH-----------HhHHHHHHHH----hC---CC-hhHHHHHHhhhhhee---ecCcH---------------
Confidence 221111211 1133333221 11 11 345556666655533 11110
Q ss_pred Ccccccc-CccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCchhHH
Q 001563 236 AWRPVLE-DPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYH 314 (1052)
Q Consensus 236 ~W~~~l~-~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~ 314 (1052)
++.. =+.+++.+|.+..-.+|+.+...-..++-+--+| .+.-.-++..+++-.....+ -.|++.-.
T Consensus 208 ---al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr------~dkl~phl~~IveyML~~tq----d~dE~VAL 274 (885)
T KOG2023|consen 208 ---ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR------PDKLVPHLDNIVEYMLQRTQ----DVDENVAL 274 (885)
T ss_pred ---HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc------HHhcccchHHHHHHHHHHcc----CcchhHHH
Confidence 0000 0358888898886566888888888888888766 23344566666665433322 23566677
Q ss_pred HHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHhhcccCccCCCCcchhhhhHHH
Q 001563 315 EYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPK 394 (1052)
Q Consensus 315 ~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~~~~~~~~~l~~~~~~ 394 (1052)
|-|.+...+.++--.. +...+++..+.- ..++...+++++ ..||+ . ..+ ++...+..+.+. |+
T Consensus 275 EACEFwla~aeqpi~~-----~~L~p~l~kliP---vLl~~M~Ysd~D-~~LL~--~--~ee-D~~vpDreeDIk---PR 337 (885)
T KOG2023|consen 275 EACEFWLALAEQPICK-----EVLQPYLDKLIP---VLLSGMVYSDDD-IILLK--N--NEE-DESVPDREEDIK---PR 337 (885)
T ss_pred HHHHHHHHHhcCcCcH-----HHHHHHHHHHHH---HHHccCcccccc-HHHhc--C--ccc-cccCCchhhhcc---ch
Confidence 8899998888764221 122334433322 223333333222 22332 1 010 010001111111 22
Q ss_pred HHHHHHhcccccccccc-CCCCCCCCCCcHHHHH------HHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCC
Q 001563 395 ITEGFITSRFNSVQAGF-PDDLSDNPLDNVELLQ------DQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQT 467 (1052)
Q Consensus 395 I~~~yi~~~l~~~~~~~-~~e~~e~~~~d~~~~~------~~le~i~~l~r~~~~~t~~~l~~ll~~~~~~~~~~~~~~~ 467 (1052)
|.++|........ +||++||+.||.+.+. ---..+..++..-.++.++.+.-++.+.+.. .
T Consensus 338 ----fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~----~---- 405 (885)
T KOG2023|consen 338 ----FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS----E---- 405 (885)
T ss_pred ----hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc----c----
Confidence 3344433221111 2222233334444332 1112233444455556666666666554221 0
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhhcc-cccCCCcccccchhhhHHHHHHHHhhhccccccccccccccHHHHHHHHHHH
Q 001563 468 GDKSEISVIEAKLAWIVHIIAAIVKIK-QCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTF 546 (1052)
Q Consensus 468 ~~~~~l~~~~e~L~Wli~i~g~~l~~~-~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~F 546 (1052)
.|. .. --.|+-.|++-.|- ... ...+ ++|+...+++++ ++. |-+-.-..|-
T Consensus 406 -~W~----vr---EagvLAlGAIAEGcM~g~------~p~L-peLip~l~~~L~--DKk-----------plVRsITCWT 457 (885)
T KOG2023|consen 406 -EWK----VR---EAGVLALGAIAEGCMQGF------VPHL-PELIPFLLSLLD--DKK-----------PLVRSITCWT 457 (885)
T ss_pred -hhh----hh---hhhHHHHHHHHHHHhhhc------ccch-HHHHHHHHHHhc--cCc-----------cceeeeeeee
Confidence 111 00 11223334554322 111 0111 246655566653 211 1122233566
Q ss_pred HHHhhhHhhccccccchHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcccchhhHHhc
Q 001563 547 FQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLK 626 (1052)
Q Consensus 547 l~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~l~ki~~~l~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~ 626 (1052)
|.||.+-.+.+.+ .+.+. .++.-+++++.. ++.+|.+.|+.-|..+-... +..+
T Consensus 458 LsRys~wv~~~~~----~~~f~------------pvL~~ll~~llD------~NK~VQEAAcsAfAtleE~A--~~eL-- 511 (885)
T KOG2023|consen 458 LSRYSKWVVQDSR----DEYFK------------PVLEGLLRRLLD------SNKKVQEAACSAFATLEEEA--GEEL-- 511 (885)
T ss_pred HhhhhhhHhcCCh----HhhhH------------HHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHhc--cchh--
Confidence 6677655544321 12222 233334444433 35567777766665555422 1112
Q ss_pred chHHHHHHHhcccCCCCCcccccccchhHHHHHHHHHHHhc---c-CChHHHHHhhHHHHHHHHHhhcCCCcccccHHHH
Q 001563 627 LDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFM---E-ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVK 702 (1052)
Q Consensus 627 ~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~y~al~~~~~~---~-~~~~~~~~~l~p~~~~~~~l~~~~~~~~~~~~~~ 702 (1052)
.|....++.+.. +.|-. -+ .|.-..+|-|+|.++-. . ...+|++-+|.|+-++|.++...+
T Consensus 512 Vp~l~~IL~~l~---~af~k-YQ-~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D---------- 576 (885)
T KOG2023|consen 512 VPYLEYILDQLV---FAFGK-YQ-KKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD---------- 576 (885)
T ss_pred HHHHHHHHHHHH---HHHHH-Hh-hcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc----------
Confidence 235555555542 11210 00 11224899999998622 1 357899999999999999987433
Q ss_pred HHHHHHHHHHhhHHhhhccchhHHHHHHHHhhcchHHHHHHhhcccCCCchHHHHHHHHHHHhhccccceeccCCCcch-
Q 001563 703 CALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNG- 781 (1052)
Q Consensus 703 ~~l~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~- 781 (1052)
+++.-+++|+..|+.|.... |.|-.-+++.+.++... +.....++.... -+++....+-
T Consensus 577 KdLfPLLEClSsia~AL~~g---------F~P~~~~Vy~Rc~~il~----------~t~q~~~~~~~~-~~~~~pdkdfi 636 (885)
T KOG2023|consen 577 KDLFPLLECLSSIASALGVG---------FLPYAQPVYQRCFRILQ----------KTLQLLAKVQQD-PTVEAPDKDFI 636 (885)
T ss_pred chHHHHHHHHHHHHHHHhcc---------ccccCHHHHHHHHHHHH----------HHHHHHHhccCC-ccccCCCcceE
Confidence 34889999999999999762 23332233333322110 000111111100 0000000000
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCchhhHhhhhhhHHHHHHHHHHhhcCCCcccccccccCCCcHHHHHHHHHHhhcccCh
Q 001563 782 ILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPL 861 (1052)
Q Consensus 782 ~~lf~~~~~l~~~y~~~~~~~~~~~~~~~~~~k~l~~~l~~l~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~~~l~ip~ 861 (1052)
+.-...++.+.+..+.++-.+ + +-.++....++|+..
T Consensus 637 I~sLDL~SGLaegLg~~ie~L------------------------v----------------a~snl~~lll~C~~D--- 673 (885)
T KOG2023|consen 637 IVSLDLLSGLAEGLGSHIEPL------------------------V----------------AQSNLLDLLLQCLQD--- 673 (885)
T ss_pred EEeHHHHhHHHHHhhhchHHH------------------------h----------------hhccHHHHHHHHhcc---
Confidence 111122233333333221100 0 001133333333222
Q ss_pred hhHhhhHhhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhc------
Q 001563 862 ADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNIT------ 935 (1052)
Q Consensus 862 ~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~------ 935 (1052)
.-|+.|..-|.||.-++..|++.+.-.-++ |..++. .-+......++.+++-++..++-....+.+
T Consensus 674 ----~~peVRQS~FALLGDltk~c~~~v~p~~~~-fl~~lg---~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~v 745 (885)
T KOG2023|consen 674 ----EVPEVRQSAFALLGDLTKACFEHVIPNLAD-FLPILG---ANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPV 745 (885)
T ss_pred ----CChHHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHh---hcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHH
Confidence 247889999999999999988776533222 333322 344444556777777777777765544311
Q ss_pred ---------cCCCCCC---hHHHHHHHHhhhCCCcH----HHHHHHHHHHHh-ccCCCchhhchhhhHHHHhcCHHHHHH
Q 001563 936 ---------MGEAPTS---PAAINLARHIVECPTLF----PEILKTLFEIVL-FEDCGNQWSLSRPMLSLILISEQVFSD 998 (1052)
Q Consensus 936 ---------~~~~~~~---~~~~~l~~~~~~~~~~~----~~~l~~~~~~ll-~~~~~~~~~~s~~L~~li~~~~~~f~~ 998 (1052)
+...+.+ ..+.-+.++-.-+|+.+ .++++--+..+= -+|...--+|=+-+...|-++|..+..
T Consensus 746 l~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~ 825 (885)
T KOG2023|consen 746 LEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVS 825 (885)
T ss_pred HHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhh
Confidence 1111000 00000111111133322 223332222221 112211126778888889999987665
Q ss_pred HH---HHHHhcCChhhHHHHHHHHHHHHhhhhcccChhhHHHH
Q 001563 999 LK---AQILTSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKF 1038 (1052)
Q Consensus 999 l~---~~li~~q~~~~~~~l~~af~~L~~~i~~~l~~~nr~~F 1038 (1052)
-. ...+++-. .-...++.-|.+.+.|-..-....|=.+|
T Consensus 826 ~~~f~c~aiAsw~-np~~~l~~~f~kiL~g~k~qvg~~nW~~~ 867 (885)
T KOG2023|consen 826 SFIFICDAIASWS-NPEDDLRDEFYKILQGFKNQVGKINWQRF 867 (885)
T ss_pred hhHHHHHHHhccc-ChHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 54 34445543 22288888888888765554555555555
No 10
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.04 E-value=1.8e-09 Score=106.78 Aligned_cols=147 Identities=22% Similarity=0.351 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-CCCCcchHHhHhhhhhcc
Q 001563 96 QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQ-PNPGLPSTHHRRVACSFR 174 (1052)
Q Consensus 96 ~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~-~~~~~~~~~h~k~~~~f~ 174 (1052)
|++|++|++.+++.|.++.||+.|+ ++++++.+.++ .++.+...++.+|..+.+|+.. .+...+..+++..+..++
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~-~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQ-SSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 6799999999999999999999998 89999999884 4678899999999999999976 233344455455555666
Q ss_pred ccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccCccCCCCCCccccccccCCCCccccccCccHHHHHHHHH
Q 001563 175 DQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYY 254 (1052)
Q Consensus 175 ~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~y 254 (1052)
+. .+.++....++|.+........+...+|+++.++++|...+.. .+.++++.+|+..
T Consensus 78 ~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i---------------------~~~~~l~~~~~~l 135 (148)
T PF08389_consen 78 SN-SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELI---------------------INSNLLNLIFQLL 135 (148)
T ss_dssp HH-HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH---------------------HSSSHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh---------------------ccHHHHHHHHHHc
Confidence 54 8888888888887765432256889999999999988765442 3355899999876
Q ss_pred hhcCCcchHHHHHHH
Q 001563 255 AITEAPLSKEALECL 269 (1052)
Q Consensus 255 ~~~~~~l~~~~l~cL 269 (1052)
.++++...|.+||
T Consensus 136 --~~~~~~~~A~~cl 148 (148)
T PF08389_consen 136 --QSPELREAAAECL 148 (148)
T ss_dssp --TSCCCHHHHHHHH
T ss_pred --CCHHHHHHHHHhC
Confidence 6788999999997
No 11
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=0.00049 Score=82.63 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHhhhccCcccHHHHHHHHhcCCChhH-HHHHHHHHHHHHhh---cC--------CCHHHHHHHHHHHHH
Q 001563 19 DSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYA-LMLASSSLLKQVTE---HS--------LALQLRLDIRNYLIN 86 (1052)
Q Consensus 19 ~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~-~f~a~~~L~~~i~~---~~--------l~~~~r~~lr~~ll~ 86 (1052)
+++.|..||+.|.++...|.....|-+|.-....+.. +--|+--+++.|++ .. +++++|.-+|+-++.
T Consensus 17 d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~ 96 (1010)
T KOG1991|consen 17 DAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILE 96 (1010)
T ss_pred ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHH
Confidence 5789999999999999999999999999988777666 77777789999996 33 789999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc--CCCCCcchH
Q 001563 87 YLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN--QPNPGLPST 164 (1052)
Q Consensus 87 ~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~--~~~~~~~~~ 164 (1052)
++++- |..+|.++..++-.|+|...|+.|+ .+...+..++++++..+..-||..|..++..+. ...--.+.
T Consensus 97 ~iv~~----p~~iRvql~~~l~~Ii~~D~p~~Wp--~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l- 169 (1010)
T KOG1991|consen 97 TIVQV----PELIRVQLTACLNTIIKADYPEQWP--GLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPL- 169 (1010)
T ss_pred HHHhC----chHHHHHHHHHHHHHHhcCCcccch--hHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccH-
Confidence 99875 7799999999999999999999998 888888889876666788999999999987654 22211111
Q ss_pred HhHhhhhhccccchHHHHHHHHHHHHhh
Q 001563 165 HHRRVACSFRDQSLFQIFQISLTSLGQL 192 (1052)
Q Consensus 165 ~h~k~~~~f~~~~L~~if~~~~~~L~~~ 192 (1052)
-..++ +.++.|.+....+|.+-
T Consensus 170 -----~~~v~-~~fP~il~~~~~ll~~~ 191 (1010)
T KOG1991|consen 170 -----GEAVE-ELFPDILQIFNGLLSQE 191 (1010)
T ss_pred -----HHHHH-HHHHHHHHHHHhhcccc
Confidence 11232 45777777777777654
No 12
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=0.00026 Score=82.95 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhh---------cCCC
Q 001563 6 QLEALCERLYNS--QDSVERAHAENTLKCFSVNTDYISQCQFILDNAL-TPYALMLASSSLLKQVTE---------HSLA 73 (1052)
Q Consensus 6 ~le~~~~~ly~~--~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~-~~~~~f~a~~~L~~~i~~---------~~l~ 73 (1052)
.+|.+.+.+... +|++.|+.||+.|.+...++++--..-.++.+++ .+.++--|+...++-|+| ..++
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~ 82 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKII 82 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccc
Confidence 345555555554 3578899999999999988887777888888887 677788888889999985 2567
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHH-HHH
Q 001563 74 LQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQ-LVS 152 (1052)
Q Consensus 74 ~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~-lv~ 152 (1052)
.++|..||.-++....+. +.-++.++..++..|.|+.+|+.|| +.++++++.+++++- +...|..-... +-.
T Consensus 83 ~~~~e~ikslIv~lMl~s----~~~iQ~qlseal~~Ig~~DFP~kWp--tLl~dL~~~ls~~D~-~~~~gVL~tahsiFk 155 (960)
T KOG1992|consen 83 EEDREQIKSLIVTLMLSS----PFNIQKQLSEALSLIGKRDFPDKWP--TLLPDLVARLSSGDF-NVINGVLVTAHSIFK 155 (960)
T ss_pred hhHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHhccccchhhH--HHHHHHHhhccccch-HHHHHHHHHHHHHHH
Confidence 788999999999887654 5568899999999999999999999 899999988854333 33444322222 222
Q ss_pred h----ccCCCCCcchHHhHhhhhhccccchHHHHHHHHHHHHh
Q 001563 153 E----MNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQ 191 (1052)
Q Consensus 153 E----f~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~ 191 (1052)
- |.+.. -|..-+++--+|.. -|..+|+...+..+.
T Consensus 156 r~R~efrSda---L~~EIK~vLd~f~~-Plt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 156 RYRPEFRSDA---LWLEIKLVLDRFAE-PLTDLFRKTMELIQR 194 (960)
T ss_pred hcCcccccHH---HHHHHHHHHHhhHh-HHHHHHHHHHHHHhh
Confidence 2 22222 24555555555553 366666666655543
No 13
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.1e-06 Score=98.99 Aligned_cols=310 Identities=20% Similarity=0.219 Sum_probs=192.4
Q ss_pred HHHHHHHhhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 001563 24 AHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDIRNYLINYLAKRGPELQSFVTA 101 (1052)
Q Consensus 24 ~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~lr~~ll~~l~~~~~~~~~~v~~ 101 (1052)
..|.++|.+|+.++++|..|..||..-...++..||+++++..|.. +.+|+.+-.++|+-+...+.+. .+.++-++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l-~~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKEL-HDHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHH-HhCCchHHH
Confidence 3589999999999999999999999999999999999999999997 9999999999999888887766 455558899
Q ss_pred HHHHHHHHHHh--hccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhcccc---
Q 001563 102 SLIQLLCRLTK--FGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQ--- 176 (1052)
Q Consensus 102 ~l~~~la~i~K--~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~h~k~~~~f~~~--- 176 (1052)
+++-.+|.+.- .+|.+ -|.++....++..+. .+.-|.+|..+.+|+.+.... ..-.|+. .|.++
T Consensus 81 QL~vavA~Lal~~~~W~n------~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~--~~a~Rr~--e~~~~l~~ 149 (559)
T KOG2081|consen 81 QLAVAVAALALHMPEWVN------PIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLT--VGANRRH--EFIDELAA 149 (559)
T ss_pred HHHHHHHHHHHHhHhhcc------hHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhh--hhhhhHH--HHHHHHHH
Confidence 99888887664 45655 255555444222233 678899999999999865421 1111221 23222
Q ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccCccCCCCCCccccccccCCCCccccccCccHHHHHHHHHhh
Q 001563 177 SLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAI 256 (1052)
Q Consensus 177 ~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~y~~ 256 (1052)
.-..+......+|+....++ ...+.++++++. ||--.+-.+-+ . +.....++.+.|....
T Consensus 150 ~~~~~L~~l~~lLe~~~l~~-~~~l~~Vl~~l~---SWl~~~~~~~d----~-----------v~a~~pLi~l~F~sl~- 209 (559)
T KOG2081|consen 150 QVSKVLVFLSDLLERSDLKS-SDDLEQVLRCLG---SWLRLHVFPPD----Q-----------VLASFPLITLAFRSLS- 209 (559)
T ss_pred hHHHHHHHHHHHHhhcCCCh-hhHHHHHHHHHh---hhhhhccCCHH----H-----------HHhhhHHHHHHHHHcc-
Confidence 34455555555665542221 234555544333 57553321000 0 1122247777887654
Q ss_pred cCCcchHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHhhcC----cCCCCchhHHHHHHHHhhhhhhcchhhh
Q 001563 257 TEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTG----QGLADHDNYHEYCRLLGRFRVNYQLSEL 332 (1052)
Q Consensus 257 ~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~----~~l~~~e~~~~~~~~l~rl~~~~~l~~l 332 (1052)
..++-..+-.|+..+-.-..+. ++.+ .|-..++.+ ..+++.. ..-.|.+-...+||++.-+...|- ..+
T Consensus 210 -~~~lhe~At~cic~ll~~~~~~---~~~~-~~~~~l~~~-v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~-~~i 282 (559)
T KOG2081|consen 210 -DDELHEEATECICALLYCSLDR---SEGL-PLAAILFIG-VIILETAFHLAMAGEDLDKNEAICRIFTELGEAFV-VLI 282 (559)
T ss_pred -cchhhHHHHHHHHHHHHHhhhh---hccC-chhHHHhcc-ccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHH-HHH
Confidence 5667888888988876432111 1111 233333333 2334432 222344555568999999998883 334
Q ss_pred hcccChHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHhhccc
Q 001563 333 VNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSV 377 (1052)
Q Consensus 333 ~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~ 377 (1052)
...|+ +|+..+-.+ ..+.....+ +...+-+.+|.++...+
T Consensus 283 ~~np~--~~l~~vell-Ll~~~h~~~--evie~SF~fW~~lse~l 322 (559)
T KOG2081|consen 283 STNPE--EFLRIVELL-LLVAGHNDT--EVIEASFNFWYSLSEEL 322 (559)
T ss_pred hhCCC--cchhHHHHH-HHhccCCch--hhhhhhHHhhhhhHHHH
Confidence 44444 344433222 111122222 66778899999998875
No 14
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.18 E-value=6e-06 Score=71.27 Aligned_cols=65 Identities=25% Similarity=0.287 Sum_probs=60.0
Q ss_pred HHHHHhhhccC-cccHHHHHHHH-hcCCChhHHHHHHHHHHHHHhh--c--------CCCHHHHHHHHHHHHHHHHh
Q 001563 26 AENTLKCFSVN-TDYISQCQFIL-DNALTPYALMLASSSLLKQVTE--H--------SLALQLRLDIRNYLINYLAK 90 (1052)
Q Consensus 26 Ae~~L~~f~~~-~~~~~~~~~IL-~~S~~~~~~f~a~~~L~~~i~~--~--------~l~~~~r~~lr~~ll~~l~~ 90 (1052)
||+.|.+|+.. |++|..|..|+ ..+.+++++++|+..|++.|++ + .+|+++|..||+++++.+.+
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~~ 77 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLLQ 77 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHcC
Confidence 79999999988 99999999999 5566999999999999999997 6 89999999999999998863
No 15
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.083 Score=62.39 Aligned_cols=218 Identities=17% Similarity=0.185 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHhhhccC--cccHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh-------------cCCCHHHHHHH
Q 001563 17 SQDSVERAHAENTLKCFSVN--TDYISQCQFILDN-ALTPYALMLASSSLLKQVTE-------------HSLALQLRLDI 80 (1052)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~~~--~~~~~~~~~IL~~-S~~~~~~f~a~~~L~~~i~~-------------~~l~~~~r~~l 80 (1052)
++|+..|..||+.|.++++. |..+...-.+|-+ -++++++..|.-.|++.+.. -.++.+-|.++
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqV 91 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQV 91 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 35567899999999999853 4445555555655 46799999999999998762 35788888888
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCC-hhhhhHHHHHHHHHhccCch-hHHHHHHHHHHHHHhccCCC
Q 001563 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-DRFRDLVKESTNFLSQATSD-HYAIGLKILNQLVSEMNQPN 158 (1052)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~-~~~~~~i~~i~~~l~~~~~~-~~~~gl~lL~~lv~Ef~~~~ 158 (1052)
|++++.-+- +..+.+.+...+++|.|...+-|.+ || ++|..+..-.....+. +..-.|.-+-=+-++..+..
T Consensus 92 K~~il~tL~----~~ep~~~s~Aaq~va~IA~~ElP~n~wp--~li~~lv~nv~~~~~~~~k~~slealGyice~i~pev 165 (859)
T KOG1241|consen 92 KNNILRTLG----SPEPRRPSSAAQCVAAIACIELPQNQWP--ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEV 165 (859)
T ss_pred HHHHHHHcC----CCCCCccchHHHHHHHHHHhhCchhhCH--HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHH
Confidence 888888763 3355677888899999999999865 77 7777776544222221 22223333333333333211
Q ss_pred CCcchHHhHhhhhhccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccCccCCCCCCccccccccCCCCcc
Q 001563 159 PGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWR 238 (1052)
Q Consensus 159 ~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~ 238 (1052)
.. ++.=.-.+..+....+.-.+ ..+--.+++.+.++|.|.-.... .| .|-+
T Consensus 166 ----l~----------~~sN~iLtaIv~gmrk~e~s---~~vRLaa~~aL~nsLef~~~nF~-~E-~ern---------- 216 (859)
T KOG1241|consen 166 ----LE----------QQSNDILTAIVQGMRKEETS---AAVRLAALNALYNSLEFTKANFN-NE-MERN---------- 216 (859)
T ss_pred ----HH----------HHHhHHHHHHHhhccccCCc---hhHHHHHHHHHHHHHHHHHHhhc-cH-hhhc----------
Confidence 01 11001112222222222111 23555788888888854321111 11 1100
Q ss_pred ccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhh
Q 001563 239 PVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASV 275 (1052)
Q Consensus 239 ~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl 275 (1052)
-+++..-+....++.++.+.+++||+.|.++
T Consensus 217 ------~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L 247 (859)
T KOG1241|consen 217 ------YIMQVVCEATQSPDEEIQVAAFQCLVKIMSL 247 (859)
T ss_pred ------eeeeeeeecccCCcHHHHHHHHHHHHHHHHH
Confidence 0122222222235567899999999999986
No 16
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.49 E-value=0.11 Score=62.63 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=109.9
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh-------cCC
Q 001563 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------HSL 72 (1052)
Q Consensus 1 ~~~l~~le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~~-------~~l 72 (1052)
|++++.++++-.+ . ++++..++.||+.|.++...++.--+...|--.. .+-..++-|+--+++.|.+ +.+
T Consensus 1 M~~~~vv~~~~~a-q-s~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i 78 (947)
T COG5657 1 MEDLPVVKQLDLA-Q-SPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSI 78 (947)
T ss_pred CCchHHHHHHHhh-c-CCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCC
Confidence 5556665554432 2 2345679999999999998888877788877666 4556677777778887763 578
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHH
Q 001563 73 ALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 152 (1052)
Q Consensus 73 ~~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ 152 (1052)
.++++.-||.-+++.+.+. +.+..-+...++++|.+..+|+.|| +.++++...+++.+...+...+..+..++.
T Consensus 79 ~p~e~v~IR~~l~~lii~s----~n~l~iq~a~avs~IA~~DfPdeWp--TL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk 152 (947)
T COG5657 79 LPDENVLIRDELFSLIISS----SNQLQIQNALAVSRIARLDFPDEWP--TLVPDLLSLLSEKDMVTNENSLRVLHHIFK 152 (947)
T ss_pred CCccchHHHHHHHHHHHcc----cchHHHHHHHHHHHHHhccCcccch--hHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 8888889999999999875 3344447888999999999999999 899999998865555556666666666666
Q ss_pred hcc
Q 001563 153 EMN 155 (1052)
Q Consensus 153 Ef~ 155 (1052)
++.
T Consensus 153 ~~r 155 (947)
T COG5657 153 RLR 155 (947)
T ss_pred HHh
Confidence 654
No 17
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.23 E-value=4.6 Score=49.37 Aligned_cols=131 Identities=17% Similarity=0.221 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHhhhccCcccHHH-HHHHHhcCCChhHHHHHHHHHHHHHhh------------cCCCHHHHHHHHHHH
Q 001563 18 QDSVERAHAENTLKCFSVNTDYISQ-CQFILDNALTPYALMLASSSLLKQVTE------------HSLALQLRLDIRNYL 84 (1052)
Q Consensus 18 ~~~~~r~~Ae~~L~~f~~~~~~~~~-~~~IL~~S~~~~~~f~a~~~L~~~i~~------------~~l~~~~r~~lr~~l 84 (1052)
++...|.+||..|.++.-.++.-.. |.-....-.+-..+-+|+-.|++.|.. ...+.+.|.-||+-+
T Consensus 16 ~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~L 95 (1005)
T KOG2274|consen 16 ADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQL 95 (1005)
T ss_pred CChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHH
Confidence 4567899999999999765554333 333444434555566667778887763 124556788889988
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhc
Q 001563 85 INYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEM 154 (1052)
Q Consensus 85 l~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef 154 (1052)
++-+. +..+.+++...-.+..|..-.|||.|| +.++-|.+.+..++.++..-++..|.++..|.
T Consensus 96 l~~l~----~sn~ki~~~vay~is~Ia~~D~Pd~Wp--Elv~~i~~~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 96 LNLLD----DSNSKIRSAVAYAISSIAAVDYPDEWP--ELVPFILKLLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred Hhhhh----ccccccchHHHHHHHHHHhccCchhhH--HHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 88876 345678889999999999999999998 77888888775555566666667777776664
No 18
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=10 Score=45.84 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHH
Q 001563 18 QDSVERAHAENTLKCFSVNTDYISQCQFILDNAL-TPYALMLASSSLLKQVTE-------HSLALQLRLDIRNYLINYLA 89 (1052)
Q Consensus 18 ~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~-~~~~~f~a~~~L~~~i~~-------~~l~~~~r~~lr~~ll~~l~ 89 (1052)
+|+..++-||+.|.++...|........|.-+.+ +..+++.|+--+++.|.| ..+|+++|..||.-++..+.
T Consensus 12 ~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~ 91 (978)
T KOG1993|consen 12 QDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD 91 (978)
T ss_pred CCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 4667899999999999999999998888876654 567889999889988874 68999999999998887764
Q ss_pred hcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc----cCchhHHHHHHHHHHHHHhccCCCCCcchHH
Q 001563 90 KRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ----ATSDHYAIGLKILNQLVSEMNQPNPGLPSTH 165 (1052)
Q Consensus 90 ~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~----~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~ 165 (1052)
+ ..+.+..+...++++|.+..+|-.|| +.++++.+.+++ ++...+...+..|..++..+++.+. .
T Consensus 92 E----~~nQlaiQ~AvlisrIARlDyPreWP--~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL----~- 160 (978)
T KOG1993|consen 92 E----ENNQLAIQNAVLISRIARLDYPREWP--DLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL----L- 160 (978)
T ss_pred c----chhHHHHHHHHHHHHHHhcCCCccch--hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH----h-
Confidence 3 35678888899999999999888888 777777666543 2445666777788888888877553 2
Q ss_pred hHhhhhhccccchHHHHHHHHHHHHh
Q 001563 166 HRRVACSFRDQSLFQIFQISLTSLGQ 191 (1052)
Q Consensus 166 h~k~~~~f~~~~L~~if~~~~~~L~~ 191 (1052)
+++..|.+. -+.|+......+-+
T Consensus 161 --a~rk~F~el-~~~I~~~l~~~l~s 183 (978)
T KOG1993|consen 161 --ADRKAFYEL-APEILTILAPILWS 183 (978)
T ss_pred --hhhHHHHHH-hHHHHHHHHHHHhc
Confidence 233346654 56677654444443
No 19
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=20 Score=43.16 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHhhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHh
Q 001563 19 DSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------HSLALQLRLDIRNYLINYLAK 90 (1052)
Q Consensus 19 ~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~~-------~~l~~~~r~~lr~~ll~~l~~ 90 (1052)
|+..|..||+.|.++.+.|.....|-+|+... -...++--|+--+++.|.| ...+++++.+.|.|+.+-+..
T Consensus 16 da~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lienil~ 95 (970)
T COG5656 16 DAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENILD 95 (970)
T ss_pred CcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHHHH
Confidence 66789999999999999999999999999776 5789999999999999886 356778999999999999887
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhccC-CChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhc
Q 001563 91 RGPELQSFVTASLIQLLCRLTKFGWF-DDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEM 154 (1052)
Q Consensus 91 ~~~~~~~~v~~~l~~~la~i~K~~W~-~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef 154 (1052)
.+..-+.-.+..+...+..|.--+|+ +-|+ +.+....++.++...+...||..+.++-.-+
T Consensus 96 v~l~sp~~tr~~l~ail~~I~seD~ps~~wg---l~p~~~nll~s~ea~~vy~gLlcl~elfkay 157 (970)
T COG5656 96 VFLYSPEVTRTALNAILVNIFSEDKPSDLWG---LFPKAANLLRSSEANHVYTGLLCLEELFKAY 157 (970)
T ss_pred HHhcCCchHHHHHHHHHHHhccccCchhhcc---cchHHHHhhcccchhHHHHHHHHHHHHHHHH
Confidence 76555666777888899999999999 4575 4566666775556678899999888876544
No 20
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=24 Score=40.90 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.0
Q ss_pred cccHHHHHHHHHHHHHHhhhHhhc
Q 001563 533 ELSKQRLDRAILTFFQHFRKSYVG 556 (1052)
Q Consensus 533 ~~s~~rl~~a~l~Fl~~~~~~yl~ 556 (1052)
..|+| +.++++|+|-.|.-+|..
T Consensus 356 i~s~p-~~~~lmkaLvl~gfa~~d 378 (748)
T KOG4541|consen 356 IFSPP-LMEALMKALVLWGFAYLD 378 (748)
T ss_pred ccCch-HHHHHHHHHHHHHHHHhh
Confidence 45645 999999999999988864
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.01 E-value=37 Score=39.70 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHhhhccCcccHHH----HHHHHhcCCChhHHHHHHHHHHHHHhh-------------cCCCHHHHHH
Q 001563 17 SQDSVERAHAENTLKCFSVNTDYISQ----CQFILDNALTPYALMLASSSLLKQVTE-------------HSLALQLRLD 79 (1052)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~~~~~~~~~----~~~IL~~S~~~~~~f~a~~~L~~~i~~-------------~~l~~~~r~~ 79 (1052)
+||+..|..||+.|.++++ .|..++ .+-+-+.-+++|.++.|.-+|++.+.. -.++.+-|.+
T Consensus 16 spD~n~rl~aE~ql~~l~~-~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~q 94 (858)
T COG5215 16 SPDPNARLRAEAQLLELQS-GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQ 94 (858)
T ss_pred CCCCCccccHHHHHHHhcc-ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHH
Confidence 4566789999999999975 443332 233345568999999999999999862 1245555555
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCC-hhhhhHHHHHHH
Q 001563 80 IRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-DRFRDLVKESTN 130 (1052)
Q Consensus 80 lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~-~~~~~~i~~i~~ 130 (1052)
+|.-.+.-+ .+.++-+.+...+++|.|.+.+-|.. || .+++++..
T Consensus 95 vK~~al~aL----~s~epr~~~~Aaql~aaIA~~Elp~~~wp--~lm~~mv~ 140 (858)
T COG5215 95 VKGMALRAL----KSPEPRFCTMAAQLLAAIARMELPNSLWP--GLMEEMVR 140 (858)
T ss_pred HHHHHHHHh----cCCccHHHHHHHHHHHHHHHhhCccccch--HHHHHHHH
Confidence 555555544 44566778888999999999998864 66 66666543
No 22
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=81.17 E-value=73 Score=37.28 Aligned_cols=110 Identities=18% Similarity=0.303 Sum_probs=53.4
Q ss_pred ccccchhHHHHHHHHHHH-hc-cCChHHHHHhhHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHhhHHhhhccchhH
Q 001563 648 YRCSRSRTTFYYTIGWLI-FM-EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTY 725 (1052)
Q Consensus 648 ~~~~~~r~~~y~al~~~~-~~-~~~~~~~~~~l~p~~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~l~Gi~~a~~~~~~~ 725 (1052)
|.+++.-|-++|++|-++ +. +...+....|-..+--.|..|.+++...| -|-+=. |+..+-+++. +..-...|
T Consensus 83 PsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF-~PYvfQ-Ila~Lle~~~---~~~~p~~y 157 (435)
T PF03378_consen 83 PSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEF-IPYVFQ-ILAQLLELRP---SSPLPDAY 157 (435)
T ss_dssp ---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTT-HHHHHH-HHHHHHHHSS-----S--TTT
T ss_pred CCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHcCC---CCCCcHHH
Confidence 777788899999999987 32 22333233333333333444444442333 222222 3333333432 11112345
Q ss_pred HHHHHHHhhcchHHHHHHhhcccCCCchHHHHHHHHHHHhhccccce
Q 001563 726 GLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRL 772 (1052)
Q Consensus 726 ~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri 772 (1052)
..+|..++.. ..| ..+.-+.++.+++..++......+
T Consensus 158 ~~L~~~Ll~p---------~lW-e~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 158 KQLFPPLLSP---------ALW-ERRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp GGGHHHHTSG---------GGG-GSTTTHHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHcCc---------chh-ccCCCcCcHHHHHHHHHHhCchhh
Confidence 5555544322 235 455667999999999998655544
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.28 E-value=46 Score=39.82 Aligned_cols=136 Identities=13% Similarity=0.203 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHhhhhh
Q 001563 246 TLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRV 325 (1052)
Q Consensus 246 ~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~~~~~~l~rl~~ 325 (1052)
++..|+..|..+.|.++..++.|+.|..-++. ..-...+..+++++...-. =.+++.-..+|+.+.-+..
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~------qal~~~iD~Fle~lFalan----D~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT------QALYVHIDKFLEILFALAN----DEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeecCc------HHHHHHHHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHH
Confidence 56778888888889999999999999886552 2333344455554432211 1345566679999998888
Q ss_pred hcchhhhhcccChHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHhhcccCccCCCCcchhhhhHHHHHHHHHhcccc
Q 001563 326 NYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGFITSRFN 405 (1052)
Q Consensus 326 ~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~yi~~~l~ 405 (1052)
.++= .++ |. +..+-++..+..+. .+++.-..-=+||..+.+.. ..++.+..|.+++.-. +-+.|.
T Consensus 245 vr~d-kl~--ph----l~~IveyML~~tqd--~dE~VALEACEFwla~aeqp-----i~~~~L~p~l~kliPv-Ll~~M~ 309 (885)
T KOG2023|consen 245 VRPD-KLV--PH----LDNIVEYMLQRTQD--VDENVALEACEFWLALAEQP-----ICKEVLQPYLDKLIPV-LLSGMV 309 (885)
T ss_pred hcHH-hcc--cc----hHHHHHHHHHHccC--cchhHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHHHHH-HHccCc
Confidence 7742 222 22 33334443332221 22232223469999988742 2346666677666655 333344
Q ss_pred c
Q 001563 406 S 406 (1052)
Q Consensus 406 ~ 406 (1052)
-
T Consensus 310 Y 310 (885)
T KOG2023|consen 310 Y 310 (885)
T ss_pred c
Confidence 3
No 24
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=65.46 E-value=2.3e+02 Score=33.06 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhccccchHHHHHHHHHHHHhhhhhhHHHHHH
Q 001563 123 DLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQE 202 (1052)
Q Consensus 123 ~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~ 202 (1052)
.+++.+.+.+. +++....+-+-+..++.+... -++...|--+|.-+ =+++|...+..|-+.-.+.......
T Consensus 271 ~~~~~L~~lL~--~~~~g~~aA~~f~il~~d~~~---~l~~~~~a~vklLy----kQR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 271 ELLDKLLELLS--SPELGQQAAKAFGILLSDSDD---VLNKENHANVKLLY----KQRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred HHHHHHHHHhC--ChhhHHHHHHHHhhHhcCcHH---hcCccccchhhhHH----hHHHHHHHHHHHHHHHhhcChhhHH
Confidence 55666666663 343344444555555555321 12234455555444 3566666666654443222112333
Q ss_pred HHHHHHhHhccccCccCCCCCCccccccccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCCCC
Q 001563 203 LALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTN 282 (1052)
Q Consensus 203 ~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~ 282 (1052)
..|..+..+|.+.+..-...+- ++++.++.+-...+++.....+|++|..+.. .+
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~l-------------------~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~------~~ 396 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPEL-------------------PTLLPLLLQSLSLPDADVLLSSLETLKMILE------EA 396 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHHH-------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH------cC
Confidence 4555556666555532211110 4577888877766677788899999988774 22
Q ss_pred hHHHHHHHHHHHHHHH
Q 001563 283 DAARSKFLAHLMTGTK 298 (1052)
Q Consensus 283 ~~~~~~~l~~~l~~~~ 298 (1052)
++.-..|+..++..+.
T Consensus 397 ~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 397 PELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445567777776654
No 25
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.23 E-value=1.5e+02 Score=32.93 Aligned_cols=171 Identities=12% Similarity=0.105 Sum_probs=82.6
Q ss_pred HHHhhhccC--cccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 001563 28 NTLKCFSVN--TDYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQLRLDIRNYLINYLAKRGPELQSFVTASLI 104 (1052)
Q Consensus 28 ~~L~~f~~~--~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~-~~l~~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~ 104 (1052)
+.+..+... +++|...-.+|+++ +.|++-.|+..|..++.. +.-......++-.++++++.+...+.+.-+..-.+
T Consensus 93 ~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av 171 (312)
T PF03224_consen 93 ELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAV 171 (312)
T ss_dssp HHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHH
T ss_pred HHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHH
Confidence 344454432 23677777766655 999999999999998886 33333322466688888887753333343445566
Q ss_pred HHHHHHHhhccCC--ChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhccccchHHHH
Q 001563 105 QLLCRLTKFGWFD--DDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIF 182 (1052)
Q Consensus 105 ~~la~i~K~~W~~--~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~h~k~~~~f~~~~L~~if 182 (1052)
++++.+++..=.- -|. .+.++.+...+..........|++++=..+..+=- ..+..+....+.+.. ++
T Consensus 172 ~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl------LSF~~~~~~~~~~~~---~i 241 (312)
T PF03224_consen 172 QCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL------LSFEPEIAEELNKKY---LI 241 (312)
T ss_dssp HHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHH------HTTSHHHHHHHHTTS---HH
T ss_pred HHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH------HhcCHHHHHHHhccc---hH
Confidence 7777777632100 011 13344444444111112223333333333333210 111223333343333 56
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhHhc
Q 001563 183 QISLTSLGQLKSDVASRLQELALSLCLKCL 212 (1052)
Q Consensus 183 ~~~~~~L~~~~~~~~~~l~~~~L~l~~~~L 212 (1052)
...+.+++...+ ++++.-++.++.+++
T Consensus 242 ~~L~~i~~~~~K---EKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 242 PLLADILKDSIK---EKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHHHHH--S---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccc---chHHHHHHHHHHHHH
Confidence 666667766655 577777888888877
No 26
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.50 E-value=5.1e+02 Score=32.09 Aligned_cols=261 Identities=15% Similarity=0.206 Sum_probs=140.9
Q ss_pred HHHHHHHHhhcchHHHHHHhhcccCCCchHHHHHHHHHHHhhccccceec------cCCC-cchhhhHHHHHH-HHHHHH
Q 001563 725 YGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTF------DSSS-PNGILLFREVSK-LIVAYG 796 (1052)
Q Consensus 725 ~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~f------~~~s-~~~~~lf~~~~~-l~~~y~ 796 (1052)
|..+-.++.+.++.+....+ +.++++|...-..|.+.+++-... +.+ +... |.....-+-..+ ++-...
T Consensus 249 Y~~m~~yM~~alfaitl~am--ks~~deValQaiEFWsticeEEiD-~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll 325 (859)
T KOG1241|consen 249 YEFMEPYMEQALFAITLAAM--KSDNDEVALQAIEFWSTICEEEID-LAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL 325 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH
Confidence 44444466666777777777 478889999999999988864311 111 1111 111111111111 111111
Q ss_pred HhhccCCCchhhHhh-hhhhHHHHHHHHHHhhcCCCccc--cccc--ccC-CCcHHHHHHHHHHhhcccChhhHhhhHhh
Q 001563 797 SRVLSLPNAADIYAY-KYKGMWICFTILARALAGNYVNF--GVFE--LYG-DRALSDALDIALKMTLSIPLADILAFRKL 870 (1052)
Q Consensus 797 ~~~~~~~~~~~~~~~-~~k~l~~~l~~l~~~l~~~~vnf--g~~~--~y~-D~~~~~~~~~~l~~~l~ip~~dl~~yPkl 870 (1052)
+.+..-+...+.++| -.|--..|+.++..+...+.||- +..+ +-+ |..-.++..+.|...+.=|..+=+++ ..
T Consensus 326 ~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~-iV 404 (859)
T KOG1241|consen 326 ELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTP-IV 404 (859)
T ss_pred HHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhH-HH
Confidence 111111111222222 33566789999999999888872 1111 222 33344555555555444443222221 11
Q ss_pred HHHHHHHHHH------------------HHhhhHHhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHH
Q 001563 871 TKAYFAFLEV------------------LFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFN 932 (1052)
Q Consensus 871 ~~~~f~ll~~------------------~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~ 932 (1052)
-.+.=.++.. +++..| -+..|.++...++.++..|++. .+-|+..||-++-+|+..+|.
T Consensus 405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~e 481 (859)
T KOG1241|consen 405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYE 481 (859)
T ss_pred hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHH
Confidence 1111111122 222333 2234778889999999999986 567999999999999999998
Q ss_pred hhccCCCCCChHHHHHHHHhhhCCCcHHHHHHHHHHHHhccC---CCchhhchhhhHHHHhcCHHHHHHHHHHHH
Q 001563 933 NITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFED---CGNQWSLSRPMLSLILISEQVFSDLKAQIL 1004 (1052)
Q Consensus 933 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~---~~~~~~~s~~L~~li~~~~~~f~~l~~~li 1004 (1052)
..... +.++.. ..+|..++..++..-=..| .+..-++=.+|-.+|.+.|+.+...+.++.
T Consensus 482 A~~s~--~qt~~~----------t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~ 544 (859)
T KOG1241|consen 482 AAVSN--GQTDPA----------TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLT 544 (859)
T ss_pred hccCC--CCCCcc----------chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 65443 111111 1345566666665543322 111226678899999999988777765544
No 27
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=50.87 E-value=6.2e+02 Score=32.02 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChHHHHH
Q 001563 869 KLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINL 948 (1052)
Q Consensus 869 kl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l 948 (1052)
-++..++.+...-. ...-....+..+=+++...+.+.+++.++.-+.++..++.-.-=..++...+..+...+.
T Consensus 417 ~l~~~~~~l~~~~~------~~~~~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 490 (727)
T PF12726_consen 417 SLCEESQALLRGKP------LQPAVSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQF 490 (727)
T ss_pred HHHHHHHHHhcCCC------cCCcchhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHH
Confidence 35666666664411 111122455666666777777888887777777666666533211111111222333333
Q ss_pred HHHhhhCCCcHHHHHHHHHHHHhccCCCc--------hhhchhhhHHHHhcCHHHHHHHHHHHHhc---CC---hhhHHH
Q 001563 949 ARHIVECPTLFPEILKTLFEIVLFEDCGN--------QWSLSRPMLSLILISEQVFSDLKAQILTS---QP---VDQHQR 1014 (1052)
Q Consensus 949 ~~~~~~~~~~~~~~l~~~~~~ll~~~~~~--------~~~~s~~L~~li~~~~~~f~~l~~~li~~---q~---~~~~~~ 1014 (1052)
.+.++.--+.+.++|. -+ .++++ +-.+++++.++++.-.+.-.+-+.+++.+ +. +..++-
T Consensus 491 N~~~~~~~~~~~~il~----rl--s~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~l 564 (727)
T PF12726_consen 491 NKSLGQITDLISQILE----RL--SDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQAL 564 (727)
T ss_pred HHHHHHHHHHHHHHHH----HH--hcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 2222221112222221 11 11111 11467888888855444444444455544 11 344455
Q ss_pred HHHHHHHHHhhhhcccChhhHHHHH
Q 001563 1015 LSVCFDKLMADVARSLDSKNRDKFT 1039 (1052)
Q Consensus 1015 l~~af~~L~~~i~~~l~~~nr~~F~ 1039 (1052)
+...|..-+.++..++++-.+-++.
T Consensus 565 l~~~~~~tL~ai~~~l~~~~~~~~~ 589 (727)
T PF12726_consen 565 LQSNFSPTLSAINWSLRQLTKLKFF 589 (727)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 5555555555777777666665553
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=42.66 E-value=3.1e+02 Score=28.67 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHH
Q 001563 898 MHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFN 932 (1052)
Q Consensus 898 ~~l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~ 932 (1052)
..++..+...++...+.|+..+|.++..++..+-+
T Consensus 52 ~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 52 RQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp H---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34445666777777788999999999999987743
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=41.62 E-value=2.5e+02 Score=33.74 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHhhhc-cCcccHHHHHHHHhc---CCChhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcC
Q 001563 17 SQDSVERAHAENTLKCFS-VNTDYISQCQFILDN---ALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLINYLAKRG 92 (1052)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~-~~~~~~~~~~~IL~~---S~~~~~~f~a~~~L~~~i~~~~l~~~~r~~lr~~ll~~l~~~~ 92 (1052)
+++...|+-+--.+..+. ++|+....+-.-|.+ ++|++.+-.|+.+|-+.. +++-...+-..+.+.+.
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~--- 124 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLS--- 124 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhc---
Confidence 456677777777777666 456644444444433 578889988888886653 33444445555555543
Q ss_pred CCchhHHHHHHHHHHHHHHhhccCCChhhhh-HHHHHHHHHhccCchhHHHHHHHHHHH
Q 001563 93 PELQSFVTASLIQLLCRLTKFGWFDDDRFRD-LVKESTNFLSQATSDHYAIGLKILNQL 150 (1052)
Q Consensus 93 ~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~-~i~~i~~~l~~~~~~~~~~gl~lL~~l 150 (1052)
+..++|+.+.+.++.++.|.. |+.- +. +++.+.+++...++.....++.++.++
T Consensus 125 -~~~~~VRk~A~~~l~~i~~~~-p~~~--~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 125 -DPSPYVRKKAALALLKIYRKD-PDLV--EDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHC-HCCH--HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHHhccC-HHHH--HHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 334599999999999999983 3332 23 688888888544555666677777766
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=41.15 E-value=93 Score=26.66 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 001563 7 LEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLIN 86 (1052)
Q Consensus 7 le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~r~~lr~~ll~ 86 (1052)
++.+.+.+-+.+++..|..|=..|.++. +++..+.....+ ++.++.++..|+.+|.+. +. .+....+.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i------~~---~~~~~~L~~ 69 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI------GD---PEAIPALIK 69 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC------HH---HHTHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh------CC---HHHHHHHHH
Confidence 4567777767778888999999998775 578888888888 679999999999888532 11 223344444
Q ss_pred HHHhcCCCchhHHHHHHHHHH
Q 001563 87 YLAKRGPELQSFVTASLIQLL 107 (1052)
Q Consensus 87 ~l~~~~~~~~~~v~~~l~~~l 107 (1052)
.+.+ +....|+......+
T Consensus 70 ~l~~---~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQD---DDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC----SSHHHHHHHHHHH
T ss_pred HHcC---CCcHHHHHHHHhhc
Confidence 4322 22455666665554
No 31
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=38.72 E-value=7.1e+02 Score=29.22 Aligned_cols=100 Identities=10% Similarity=0.104 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhc--cCChHHHHHhhHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHhhHHhhhccc--hhHHHHHHH
Q 001563 656 TFYYTIGWLIFM--EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSR--RTYGLLFDW 731 (1052)
Q Consensus 656 ~~y~al~~~~~~--~~~~~~~~~~l~p~~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~l~Gi~~a~~~~--~~~~~lf~~ 731 (1052)
-+++++.|++.. +.-..+...+++-+...+..++.||+ ||.. --.+++.+..+++-+... .....
T Consensus 45 ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPs----nP~F---nHylFEsi~~lir~~~~~~~~~v~~---- 113 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPS----NPRF---NHYLFESIGALIRFVCEADPEAVSQ---- 113 (435)
T ss_dssp HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-------HHH---HHHHHHHHHHHHHHS-GGGHH---H----
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC----Ccch---hhhHHHHHHHHHHhccCCChhHHHH----
Confidence 577888887633 33345677888888888888887772 3322 223445554444543321 11223
Q ss_pred HhhcchHHHHHHhhcccCCCchHHHHHHHHHHHhhcc
Q 001563 732 LYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNK 768 (1052)
Q Consensus 732 i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~ 768 (1052)
+.+.++|.+..+++. +-.+.+.-++.+++-+++.+
T Consensus 114 ~E~~L~P~f~~ILq~--dV~EF~PYvfQIla~Lle~~ 148 (435)
T PF03378_consen 114 FEEALFPPFQEILQQ--DVQEFIPYVFQILAQLLELR 148 (435)
T ss_dssp HHHHHHHHHHHHHHT--T-TTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcC
Confidence 333344555555553 34577777777778777755
No 32
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=38.36 E-value=3.3e+02 Score=29.45 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhcc-ccCccCCCCCCccccccccCCCCccccccCccHHHHHHHHHh
Q 001563 177 SLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLS-FDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYA 255 (1052)
Q Consensus 177 ~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Ls-w~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~y~ 255 (1052)
.++++|=.++.+|+.... .-...+|+++.++|. -|+. ++...+...-..|..|. .-.-+++.++++.-.
T Consensus 4 ~~pQlFW~~vAcL~S~~E----~EF~~aL~lL~~~l~k~dl~----~~~~~~~L~~~~p~~we-~~~f~Glq~Ll~KGL- 73 (262)
T PF14225_consen 4 LFPQLFWTAVACLESIHE----HEFLEALSLLNKLLDKLDLD----DPDVRDVLESSQPQLWE-WGNFEGLQPLLLKGL- 73 (262)
T ss_pred hhhHHHHHHHHhhcCCcH----HHHHHHHHHHHHHHhhcCCc----hHHHHHHHHHhCCcccc-CCCchhHHHHHhCcc-
Confidence 378899999999987542 455678888888874 2221 11111112223566665 111245666666543
Q ss_pred hcCCcchHHHHHHHHHHhhhc-ccCCCChHHHHHHHHHHHHHHHHHhhcC---cCCCCchhHHHHHHHHhhhhhhcchhh
Q 001563 256 ITEAPLSKEALECLVRLASVR-RSLFTNDAARSKFLAHLMTGTKEILQTG---QGLADHDNYHEYCRLLGRFRVNYQLSE 331 (1052)
Q Consensus 256 ~~~~~l~~~~l~cL~~l~sl~-~~~f~~~~~~~~~l~~~l~~~~~il~~~---~~l~~~e~~~~~~~~l~rl~~~~~l~~ 331 (1052)
.-+.-...+++.|.++..+. ..++.+.+. +++-.++..+...+..- ..+...+...+.|..+.++..+.+...
T Consensus 74 -~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~--rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~ 150 (262)
T PF14225_consen 74 -RSSSTYELTLRLLSRLTPLPDDPLIGDSQS--RLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPN 150 (262)
T ss_pred -CCCCcHHHHHHHHHHHhcCCCccccCCCCc--cHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCcc
Confidence 23456678888888888775 335544323 55556666655554431 111112344578888888888877666
Q ss_pred hhcc
Q 001563 332 LVNV 335 (1052)
Q Consensus 332 l~~~ 335 (1052)
|.++
T Consensus 151 La~i 154 (262)
T PF14225_consen 151 LARI 154 (262)
T ss_pred HHHH
Confidence 6654
No 33
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=35.75 E-value=4.8e+02 Score=31.71 Aligned_cols=146 Identities=15% Similarity=0.275 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcCCC-----hHHHhHHHHHHHHHHHHHHHhhccCCCCC
Q 001563 867 FRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLD-----TNISSQCAAAVDNLAAFYFNNITMGEAPT 941 (1052)
Q Consensus 867 yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~~-----~~i~~~~~~~l~~l~~~~~~~~~~~~~~~ 941 (1052)
|..++..|++=|+.+-. .......=+.++..||++.- .+--+.|++.+..++.++.+.+ ++.+-.
T Consensus 79 F~sVsdRF~~eL~~~~~---------~~~~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h-~~~~ik 148 (552)
T PF14222_consen 79 FVSVSDRFIAELEKLRK---------DSNDAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAH-KKSDIK 148 (552)
T ss_pred ChHHHHHHHHHHHHhcc---------cCCchHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcc-hhhHHH
Q ss_pred ChHHHHHHHHhhh---------CCCcHHHHHHHHHHHHh--ccCCCchhhchhhhHHHH-hcCH-----HHHH-HHHHHH
Q 001563 942 SPAAINLARHIVE---------CPTLFPEILKTLFEIVL--FEDCGNQWSLSRPMLSLI-LISE-----QVFS-DLKAQI 1003 (1052)
Q Consensus 942 ~~~~~~l~~~~~~---------~~~~~~~~l~~~~~~ll--~~~~~~~~~~s~~L~~li-~~~~-----~~f~-~l~~~l 1003 (1052)
...++-+.+++.+ +...|.+.+..+...+. ..+ ...|..+=||...+ |+.| +.|. ++.+.+
T Consensus 149 ~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K-~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~ 227 (552)
T PF14222_consen 149 HAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK-PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESL 227 (552)
T ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC-cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q ss_pred HhcCC-hhhHHHHHHHHHHHH
Q 001563 1004 LTSQP-VDQHQRLSVCFDKLM 1023 (1052)
Q Consensus 1004 i~~q~-~~~~~~l~~af~~L~ 1023 (1052)
..+-. ...+.-..++...|.
T Consensus 228 ~~klKdk~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 228 ISKLKDKETRPVALECLSRLL 248 (552)
T ss_pred HhhcCChhhhHHHHHHHHHHH
No 34
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.51 E-value=1.3e+03 Score=34.37 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=70.0
Q ss_pred CchhhHhhhhhhHHHHHHHHHHhhcCCCcccccccccCCCcHHHHHHHHHHhhcccCh-----------------hhHhh
Q 001563 804 NAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPL-----------------ADILA 866 (1052)
Q Consensus 804 ~~~~~~~~~~k~l~~~l~~l~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~~~l~ip~-----------------~dl~~ 866 (1052)
..+..|.+.+..+-.+++.++++++| ++ -+.--+.+.++|+.+|. .-+-.
T Consensus 666 ~~d~ly~e~lplL~~lLe~ln~l~~~----------~~---s~~mkdLfvELclTvPvRLS~Llpylp~LM~PLv~aLkg 732 (3550)
T KOG0889|consen 666 AFDSLYREVLPLLPNLLEILNHLLSS----------FH---SQGMKDLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKG 732 (3550)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhc----------cC---ccchHHHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcC
Confidence 34566888998999999999999986 11 12223344444444443 33344
Q ss_pred hHhhHHHHHHHHHHHHh-hhHHhHhcCCHHHHHHHHHHHHHhhcCC-ChHHHhHHHHHHHHHHHHHHH
Q 001563 867 FRKLTKAYFAFLEVLFS-SHITFILNLNTNTFMHIVGSLESGLKGL-DTNISSQCAAAVDNLAAFYFN 932 (1052)
Q Consensus 867 yPkl~~~~f~ll~~~~~-~~~~~l~~l~~~~f~~l~~sl~~gl~~~-~~~i~~~~~~~l~~l~~~~~~ 932 (1052)
.|++..+=+.-++.... .-|+++...=...-..+|.+|-.+++-. +..++..|..++..|.++--+
T Consensus 733 s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG~NRq 800 (3550)
T KOG0889|consen 733 SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILGKLGGRNRQ 800 (3550)
T ss_pred CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCcchh
Confidence 57777777766655543 3355554322223344444555555554 566888899998888876655
No 35
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=34.13 E-value=1e+03 Score=29.65 Aligned_cols=73 Identities=10% Similarity=0.121 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc
Q 001563 58 LASSSLLKQVTEHSLALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ 134 (1052)
Q Consensus 58 ~a~~~L~~~i~~~~l~~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~ 134 (1052)
..++.+.+.|+. ++.-+..+..|++++++-.-.+.-.|.+.+.|..++.+ --+|.|..-.-+..+.+.+.+++
T Consensus 438 r~lasi~s~itk---~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~ncl~n 510 (970)
T COG5656 438 RLLASIKSFITK---MSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHNCLKN 510 (970)
T ss_pred HHHHHHHHHhcc---CchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhc
Confidence 333344443333 44556677888999887433444578999999999999 88899986544556666666643
No 36
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=33.36 E-value=1.7e+02 Score=24.91 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhcCCChhHHHHHHHHH
Q 001563 7 LEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSL 63 (1052)
Q Consensus 7 le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L 63 (1052)
++.+.+.+ ..+++..|.+|=..|..+. +++.++.....++++.+..++..|+.+|
T Consensus 33 ~~~L~~~l-~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 33 IPALIELL-KDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHH-TSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 44455444 5677888999999999886 5889999999999999888899988876
No 37
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=32.49 E-value=1.1e+02 Score=30.68 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHH
Q 001563 869 KLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFY 930 (1052)
Q Consensus 869 kl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~ 930 (1052)
++|+.-|+++..+.+.++..+ + ...+++.+..|++. +.+|-..|+..+..++...
T Consensus 42 elRK~ayE~lytlLd~~~~~~---~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI---D---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhC---C---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 478889999888888665433 2 45668899999998 9999999999888887544
No 38
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=32.42 E-value=1.6e+03 Score=31.54 Aligned_cols=279 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHhc------CC-ChhHHHHHHHHHHHHHhhcCCCHHH-------HHHHHHHHHHHHHhcCCCchhHH---HHH
Q 001563 40 ISQCQFILDN------AL-TPYALMLASSSLLKQVTEHSLALQL-------RLDIRNYLINYLAKRGPELQSFV---TAS 102 (1052)
Q Consensus 40 ~~~~~~IL~~------S~-~~~~~f~a~~~L~~~i~~~~l~~~~-------r~~lr~~ll~~l~~~~~~~~~~v---~~~ 102 (1052)
|...|.++.. ++ |..+-+||..+|+++-.+ -++.++ +.-++-|..=+--+...+.-..| ..+
T Consensus 1131 W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~k-fle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~q 1209 (1780)
T PLN03076 1131 WSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMK-FLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQ 1209 (1780)
T ss_pred hHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH-hcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhccccchHHHH
Q 001563 103 LIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIF 182 (1052)
Q Consensus 103 l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~h~k~~~~f~~~~L~~if 182 (1052)
++...+.-+|-||. .++.=+........+.-...|...+..++.|+-+.-..+. ...|
T Consensus 1210 mI~s~~~nIkSGWk------tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~----------------~~~F 1267 (1780)
T PLN03076 1210 MVLSRVNNVKSGWK------SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETE----------------TTTF 1267 (1780)
T ss_pred HHHHHHhhhhcCcH------HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccc----------------hhHH
Q ss_pred HHHHHHHHhhhhhhH-HHHHHHHHHHHhHhccccCccCCCC------------------CCccccccccCCCC----ccc
Q 001563 183 QISLTSLGQLKSDVA-SRLQELALSLCLKCLSFDFVGTSID------------------ESSEEFGTVQIPSA----WRP 239 (1052)
Q Consensus 183 ~~~~~~L~~~~~~~~-~~l~~~~L~l~~~~Lsw~f~~~~~d------------------e~~~~~~~~~~p~~----W~~ 239 (1052)
.-|+.+|.+...... ..+.-.+++++..|-..--.+.... +..++...+..... |-|
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Q ss_pred cccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHhhcCcCCCC----------
Q 001563 240 VLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLAD---------- 309 (1052)
Q Consensus 240 ~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~---------- 309 (1052)
++.-|-++....+++.+..|++.|-++..-.|..|+. +-...-+..++--+...+........
T Consensus 1348 ------LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~-~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~ 1420 (1780)
T PLN03076 1348 ------LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSL-PLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVD 1420 (1780)
T ss_pred ------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Q ss_pred ------------chhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHH
Q 001563 310 ------------HDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLK 351 (1052)
Q Consensus 310 ------------~e~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~ 351 (1052)
.+......+.+..+.+.| +..|.. ..+.|+.++..+.++
T Consensus 1421 ~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f-Fd~L~~--~L~~~l~ll~~ci~q 1471 (1780)
T PLN03076 1421 GDQGELDQDAWLYETCTLALQLVVDLFVKF-YPTVNP--LLKKVLMLLVSFIKR 1471 (1780)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHcC
No 39
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=32.26 E-value=1.1e+02 Score=23.76 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=38.4
Q ss_pred HhhHHHHHHHHHHHHhhhHHhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHH
Q 001563 868 RKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNL 926 (1052)
Q Consensus 868 Pkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~sl~~gl~~~~~~i~~~~~~~l~~l 926 (1052)
|.++.+-...|..+.+.+++.+. +....++..+...++..+.+|-..++.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~----~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ----PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH----HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45555555566555555555433 25678888888999988889988888887654
No 40
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=31.95 E-value=4.8e+02 Score=25.91 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhccccchHHHHHHHHHHHHhhhhhhHHHHH
Q 001563 122 RDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQ 201 (1052)
Q Consensus 122 ~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~ 201 (1052)
+.++..+.+++++.+++.+..|+.++...+++-+ |+. |.++ -..-++..+.+|++.. +..+.
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-------~e~-------l~~~-~~~W~~~Ll~~L~~~~---~~~~~ 85 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-------WEI-------LLSH-GSQWLRALLSILEKPD---PPSVL 85 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-------HHH-------HHHH-HHHHHHHHHHHHcCCC---CHHHH
Confidence 3567788888876678899999999999998743 221 3222 2445555666666522 23455
Q ss_pred HHHHHHHhHhccccCccCCCCCCccccccccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCCC
Q 001563 202 ELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFT 281 (1052)
Q Consensus 202 ~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~ 281 (1052)
+.++.++..++.+ .+..++-+-| ..+-.. |.+++.+..+-. ++.....++++|..+.....+.|.
T Consensus 86 ~~ai~~L~~l~~~--~~~~p~l~Re-i~tp~l----------~~~i~~ll~l~~--~~~~~~~~l~~L~~ll~~~ptt~r 150 (165)
T PF08167_consen 86 EAAIITLTRLFDL--IRGKPTLTRE-IATPNL----------PKFIQSLLQLLQ--DSSCPETALDALATLLPHHPTTFR 150 (165)
T ss_pred HHHHHHHHHHHHH--hcCCCchHHH-HhhccH----------HHHHHHHHHHHh--ccccHHHHHHHHHHHHHHCCcccc
Confidence 5555555555521 1111110001 000000 345555555432 256778888888888876655554
Q ss_pred C
Q 001563 282 N 282 (1052)
Q Consensus 282 ~ 282 (1052)
+
T Consensus 151 p 151 (165)
T PF08167_consen 151 P 151 (165)
T ss_pred c
Confidence 3
No 41
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=31.55 E-value=1e+02 Score=29.44 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHH
Q 001563 4 LAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQF 45 (1052)
Q Consensus 4 l~~le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~ 45 (1052)
++-|..++.++|+.++.+.+.+.-.-|.+|.-+|-+|...++
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq 56 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ 56 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH
Confidence 566788999999998888888888899999999999986665
No 42
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=29.85 E-value=79 Score=21.39 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=24.1
Q ss_pred HHHHHHHhhcCCChHHHhHHHHHHHHHHHH
Q 001563 900 IVGSLESGLKGLDTNISSQCAAAVDNLAAF 929 (1052)
Q Consensus 900 l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~ 929 (1052)
++..+..++++.+++|-..++.++..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 355677889999999999999999988864
No 43
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.86 E-value=4.5e+02 Score=25.24 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=35.0
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 001563 50 ALTPYALMLASSSLLKQVTEHSLALQLRLD-----IRNYLINYLAKRGPELQSFVTASLIQLLC 108 (1052)
Q Consensus 50 S~~~~~~f~a~~~L~~~i~~~~l~~~~r~~-----lr~~ll~~l~~~~~~~~~~v~~~l~~~la 108 (1052)
+.|+.++..|+..|..++.+ -++.-+.+ .-+.+...+........+.|++++..++.
T Consensus 53 ~~~~~vq~~aL~lld~lvkN--cg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 53 HGNPNVQLLALTLLDALVKN--CGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp TSSHHHHHHHHHHHHHHHHH--SHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHc--CCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 48999999999999999987 11222222 33445554444422211338888877664
No 44
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=28.79 E-value=93 Score=31.18 Aligned_cols=69 Identities=13% Similarity=0.248 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHHhhhc-ccCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHhhhhhhcc
Q 001563 260 PLSKEALECLVRLASVR-RSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNYQ 328 (1052)
Q Consensus 260 ~l~~~~l~cL~~l~sl~-~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~~~~~~l~rl~~~~~ 328 (1052)
.-...++++|..+..+. .-+|....++..|+.-+.+-+..+++++..+.+...-..++++|+-.+..|.
T Consensus 96 ~q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~~K~~~ik~~if~il~~~vk~h~ 165 (171)
T PF12922_consen 96 SQRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEIVKNKSIKDAIFRILGTAVKKHN 165 (171)
T ss_pred HHHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHhhccHHHHHHHHHHHHHHHHHcc
Confidence 35667788888888776 5578887888899998888888888877666666555568888888887774
No 45
>PTZ00429 beta-adaptin; Provisional
Probab=27.56 E-value=9e+02 Score=30.58 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHhhhcc-Ccc-cHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcC
Q 001563 17 SQDSVERAHAENTLKCFSV-NTD-YISQCQFILDN--ALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLINYLAKRG 92 (1052)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~~-~~~-~~~~~~~IL~~--S~~~~~~f~a~~~L~~~i~~~~l~~~~r~~lr~~ll~~l~~~~ 92 (1052)
+++.+.|+-.--.+..+.+ +|+ ++..+-.+... +.||+++=.|+.+|-.+ .. .++-+++...+.+.-
T Consensus 79 S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I------r~---~~i~e~l~~~lkk~L 149 (746)
T PTZ00429 79 STDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI------RV---SSVLEYTLEPLRRAV 149 (746)
T ss_pred CCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC------Cc---HHHHHHHHHHHHHHh
Confidence 3455556666666665553 454 33333333322 24555555555444322 11 235567777776665
Q ss_pred CCchhHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHH
Q 001563 93 PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 152 (1052)
Q Consensus 93 ~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ 152 (1052)
.+..+||+.+...+++++.+.. ++.-+...+++++..++...++.....++..|.++.+
T Consensus 150 ~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 150 ADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred cCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 6778999999999999987753 2211122567788887754556666777777777754
No 46
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=26.26 E-value=7.5e+02 Score=26.98 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=92.0
Q ss_pred HHHhhccCC-ChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhccccchHHHHHHHHH
Q 001563 109 RLTKFGWFD-DDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLT 187 (1052)
Q Consensus 109 ~i~K~~W~~-~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~ 187 (1052)
.-+++.|.+ +|+ -+++-+-.++...++.....||.+|..++....... -..++++++.++|.-++.
T Consensus 106 ~~~~~~~i~~~~~--liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-----------~~~L~~tGl~~v~~~al~ 172 (282)
T PF10521_consen 106 SQLDRPWISQHWP--LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-----------WDILRRTGLFSVFEDALF 172 (282)
T ss_pred hcCCcchHHHhhh--HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-----------hHHHHHcChHHHHHHHHH
Confidence 355666654 454 456666677755567889999999999998876533 224667788888776655
Q ss_pred HHHh-hh---h-hhHHHHHHHHHHHHhHhccccCccCCCCCCccccccccCCCCccccccCccHHHHHHHHHhh-c---C
Q 001563 188 SLGQ-LK---S-DVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAI-T---E 258 (1052)
Q Consensus 188 ~L~~-~~---~-~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~y~~-~---~ 258 (1052)
-.-. +. . +....+...+..++..++.=.+. +++ ..+....+.-+-+.++..+.. . .
T Consensus 173 ~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~----~~~-----------~~r~~~l~~~l~e~IL~~~~~~~~~~~ 237 (282)
T PF10521_consen 173 PCLYYLPPITPEDESLELLQAAYPALLSLLKTQEN----DDS-----------NPRSTWLDKILREGILSSMEHESSFSY 237 (282)
T ss_pred HHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhcc----CCc-----------ccchHHHHHHHHHHHhhhceeccccCc
Confidence 3322 11 1 11235667776666666532111 000 011111111122323333221 2 2
Q ss_pred CcchHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHhhcCcC
Q 001563 259 APLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQG 306 (1052)
Q Consensus 259 ~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~ 306 (1052)
+.++...++-|..+...=| ..-.+|+++++..+.+++.++.+
T Consensus 238 ~~l~~~ll~~l~~~i~~lG------i~~~~hL~rii~~l~~~l~npf~ 279 (282)
T PF10521_consen 238 PRLRTVLLQQLPPIIDELG------ISSVKHLQRIIPVLSQILENPFG 279 (282)
T ss_pred hhHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHhcCCCc
Confidence 5666777777766664321 35678888888888888876543
No 47
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=26.10 E-value=1.1e+03 Score=27.44 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhc-cCcccHHH--------HHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHHH
Q 001563 7 LEALCERLYNSQDSVERAHAENTLKCFS-VNTDYISQ--------CQFILDNALTPYALMLASSSLLKQVTEHSLALQLR 77 (1052)
Q Consensus 7 le~~~~~ly~~~~~~~r~~Ae~~L~~f~-~~~~~~~~--------~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~r 77 (1052)
+.+++. ++.++|+.+|.....+|...- +-++.-.. ....+..+..++..--.+..+.+.++. ++..-|
T Consensus 135 i~~Ll~-l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g--f~~plk 211 (409)
T PF01603_consen 135 IKKLLE-LFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING--FAVPLK 211 (409)
T ss_dssp HHHHHH-TTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT----SS--
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc--cCCCCc
Confidence 344443 345678889999888887632 22222221 222234455555555555556555554 455556
Q ss_pred HHHHHHHHHHHHhcC--CCchhHHHHHH--------------HHHHHHHHhhccCCChhh--hhHHHHHHHHHhccCc-h
Q 001563 78 LDIRNYLINYLAKRG--PELQSFVTASL--------------IQLLCRLTKFGWFDDDRF--RDLVKESTNFLSQATS-D 138 (1052)
Q Consensus 78 ~~lr~~ll~~l~~~~--~~~~~~v~~~l--------------~~~la~i~K~~W~~~~~~--~~~i~~i~~~l~~~~~-~ 138 (1052)
.+.++|+.+.++-.. +.... .-.++ ...+..-+-+-||-.+.. --|+.++...+....+ +
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~-y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~ 290 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSS-YHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE 290 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGG-THHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH
Confidence 666667666665332 12221 12222 222333344679865432 2578888877753332 3
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 001563 139 HYAIGLKILNQLVSEMNQPN 158 (1052)
Q Consensus 139 ~~~~gl~lL~~lv~Ef~~~~ 158 (1052)
-..+...+..-+...+++..
T Consensus 291 f~~i~~~lf~~la~ci~S~h 310 (409)
T PF01603_consen 291 FQKIMVPLFKRLAKCISSPH 310 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 34455556666666666655
No 48
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=25.90 E-value=3.2e+02 Score=31.32 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCCcccccccccCCCcHHHHHHHH----HHhhcccChhhHhhhHhhHHHHHHHHHHHHhhhHHhHhc
Q 001563 816 MWICFTILARALAGNYVNFGVFELYGDRALSDALDIA----LKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILN 891 (1052)
Q Consensus 816 l~~~l~~l~~~l~~~~vnfg~~~~y~D~~~~~~~~~~----l~~~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~ 891 (1052)
+...+.++.|.+-++ |.--.++++.+ +..++.|-..+-....++-..||++++..|++--++..+
T Consensus 153 ~~v~~g~l~Ny~l~~-----------~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d 221 (604)
T KOG4500|consen 153 SAVAFGVLHNYILDS-----------RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKD 221 (604)
T ss_pred HHHHHHHHHHhhCCc-----------HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhcc
Confidence 445677787777542 11123344333 445566777777788899999999999999976555544
Q ss_pred C
Q 001563 892 L 892 (1052)
Q Consensus 892 l 892 (1052)
.
T Consensus 222 ~ 222 (604)
T KOG4500|consen 222 C 222 (604)
T ss_pred c
Confidence 3
No 49
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=25.10 E-value=1.2e+03 Score=27.72 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHhhccCCChh
Q 001563 55 ALMLASSSLLKQVTEHSLALQLRLDIRNYLINYLAKRGPEL-QSFVTASLIQLLCRLTKFGWFDDDR 120 (1052)
Q Consensus 55 ~~f~a~~~L~~~i~~~~l~~~~r~~lr~~ll~~l~~~~~~~-~~~v~~~l~~~la~i~K~~W~~~~~ 120 (1052)
.+.||+-++.++|.. ++.+++.+|-..|-.++.....+. ..||..|++. .-|++.|+
T Consensus 259 ld~ygCRVIQkale~--id~~~~~~Li~ELd~~vl~~v~DQngnHViQK~ie-------~~p~~~~~ 316 (503)
T KOG1488|consen 259 LDMYGCRVIQKALEK--VDVSLQIQLIDELDGHLLKCVKDQNGNHVIQKCIE-------TLPPDAWQ 316 (503)
T ss_pred cccccchhHHHHHHh--cCHHHHHHHHHHHHhhHHHHHhhcccceehhhhhh-------ccChHHHH
Confidence 456777778777776 666777766666666665554443 3577777644 44666553
No 50
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=25.04 E-value=8.8e+02 Score=26.06 Aligned_cols=143 Identities=20% Similarity=0.153 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccC---------cccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCH
Q 001563 4 LAQLEALCERLYNSQDSVERAHAENTLKCFSVN---------TDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLAL 74 (1052)
Q Consensus 4 l~~le~~~~~ly~~~~~~~r~~Ae~~L~~f~~~---------~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~ 74 (1052)
-++|+.+...+-...|+..+..|--.+...... .+..+....+|.. .++.++=.|+.+|.+. ..+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nl----s~~~ 85 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNL----SVND 85 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhc----CCCh
Confidence 367888887877777777777766666544332 2455555666655 5677777777766544 3456
Q ss_pred HHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHh-hccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHH
Q 001563 75 QLRLDIRNYLINYLAKRG-PELQSFVTASLIQLLCRLTK-FGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 152 (1052)
Q Consensus 75 ~~r~~lr~~ll~~l~~~~-~~~~~~v~~~l~~~la~i~K-~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ 152 (1052)
+.+..|+.|+-+.+-.-. ....+.+.....+++..+.- ..+ +.-....++++..++..++.....-+|++|..+.+
T Consensus 86 en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 86 ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 677788888766654322 23456777776777766641 111 11123456677777766777777788888877764
Q ss_pred h
Q 001563 153 E 153 (1052)
Q Consensus 153 E 153 (1052)
.
T Consensus 164 n 164 (254)
T PF04826_consen 164 N 164 (254)
T ss_pred C
Confidence 3
No 51
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=24.50 E-value=1.1e+03 Score=27.21 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=28.8
Q ss_pred HHHHHHHHHhccCCCchh------hchhhhHHHHhcCHHHHHHHHHHHHhc
Q 001563 962 ILKTLFEIVLFEDCGNQW------SLSRPMLSLILISEQVFSDLKAQILTS 1006 (1052)
Q Consensus 962 ~l~~~~~~ll~~~~~~~~------~~s~~L~~li~~~~~~f~~l~~~li~~ 1006 (1052)
++..++..+ +...++-| .+..++-.+.-++|+.|++..++.-+.
T Consensus 337 i~p~i~~~L-~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~ 386 (409)
T PF01603_consen 337 ILPIIFPAL-YRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEK 386 (409)
T ss_dssp HHHHHHHHH-SSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 355555554 44455556 456667777789999999988776654
No 52
>PF05536 Neurochondrin: Neurochondrin
Probab=23.95 E-value=1.3e+03 Score=27.83 Aligned_cols=229 Identities=18% Similarity=0.153 Sum_probs=117.1
Q ss_pred CcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHHHHHH-----HHHHHHHHHhcCCC--chhHHHHHH-HHHH
Q 001563 36 NTDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDI-----RNYLINYLAKRGPE--LQSFVTASL-IQLL 107 (1052)
Q Consensus 36 ~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~r~~l-----r~~ll~~l~~~~~~--~~~~v~~~l-~~~l 107 (1052)
++..+..|..+|...+ +.-+|.|+-.+++.+.........+..+ ..|+-..+...... .++.....+ ..++
T Consensus 3 ~~~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred chHHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 4677899999998877 9999999998888887622222333333 36666666553211 122222222 2222
Q ss_pred HHHHhhccCCC----hhhhhHHHHHHHHHhccCc-hhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhccccchHHHH
Q 001563 108 CRLTKFGWFDD----DRFRDLVKESTNFLSQATS-DHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIF 182 (1052)
Q Consensus 108 a~i~K~~W~~~----~~~~~~i~~i~~~l~~~~~-~~~~~gl~lL~~lv~Ef~~~~~~~~~~~h~k~~~~f~~~~L~~if 182 (1052)
+.... +++ +..-+-|+-+...+.+.+. +...-.+..|..++ ++ .-| ++. -.+.+.++.++
T Consensus 82 ~~f~~---~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia---s~-~~G------~~a--Ll~~g~v~~L~ 146 (543)
T PF05536_consen 82 AAFCR---DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA---SS-PEG------AKA--LLESGAVPALC 146 (543)
T ss_pred HHHcC---ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH---cC-cHh------HHH--HHhcCCHHHHH
Confidence 22222 221 2222233444555544444 55556666677666 21 111 111 12234566665
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccCccCCCCCCccccccccCCCCccccccC-ccHHHHHHHHHhhcCCcc
Q 001563 183 QISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLED-PSTLQIFFDYYAITEAPL 261 (1052)
Q Consensus 183 ~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~-~~~l~~lf~~y~~~~~~l 261 (1052)
+.+.. + ....+.++.++.++++..-. ..|...-.. ..++..+-..+.......
T Consensus 147 ei~~~---~------~~~~E~Al~lL~~Lls~~~~-----------------~~~~~~~~~l~~il~~La~~fs~~~~~~ 200 (543)
T PF05536_consen 147 EIIPN---Q------SFQMEIALNLLLNLLSRLGQ-----------------KSWAEDSQLLHSILPSLARDFSSFHGED 200 (543)
T ss_pred HHHHh---C------cchHHHHHHHHHHHHHhcch-----------------hhhhhhHHHHHHHHHHHHHHHHhhccch
Confidence 55544 1 23455677777777653110 122210000 123333333443334455
Q ss_pred hHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHhhcCcC
Q 001563 262 SKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQG 306 (1052)
Q Consensus 262 ~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~ 306 (1052)
.-..+..|..+-+-....-.......+++..+..|+..++.++.+
T Consensus 201 kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~ 245 (543)
T PF05536_consen 201 KFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLT 245 (543)
T ss_pred HHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCC
Confidence 666677776665543111001124558999999999999987654
No 53
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=23.48 E-value=1.1e+03 Score=26.82 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHHHhcccchhhHHhcchHHHHHHHhc
Q 001563 581 LLLNVIVGKIATNLKCYTE---SQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANH 637 (1052)
Q Consensus 581 ~~~~~~l~ki~~~l~~~~~---~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~ 637 (1052)
..+..|++-++..|..++. .+.++..+++.|..++++.........-|.++.|++..
T Consensus 133 ~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~V 192 (370)
T PF08506_consen 133 PFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKV 192 (370)
T ss_dssp HHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHh
Confidence 3455566666666665543 35688889999988777654333444456667777654
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=23.23 E-value=5.4e+02 Score=22.93 Aligned_cols=109 Identities=13% Similarity=-0.016 Sum_probs=60.0
Q ss_pred ccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-cCCCHHH-HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhcc
Q 001563 38 DYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQL-RLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGW 115 (1052)
Q Consensus 38 ~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~-~~l~~~~-r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W 115 (1052)
+..+.+..+|... +++++..|+.+|.++... +.....- +.+.-..+++++.. ...-++...+.++..+...+.
T Consensus 7 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 7 GGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS----EDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred CChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC----CCHHHHHHHHHHHHHHccCcH
Confidence 3556666677644 478888888888776543 1111111 11444556666543 245677788888888876553
Q ss_pred CCChh-h-hhHHHHHHHHHhccCchhHHHHHHHHHHHH
Q 001563 116 FDDDR-F-RDLVKESTNFLSQATSDHYAIGLKILNQLV 151 (1052)
Q Consensus 116 ~~~~~-~-~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv 151 (1052)
..... . ..+++.+.+.+...+......++.+|..+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 21111 1 124555566664334445555555555543
No 55
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=22.70 E-value=1.3e+02 Score=27.23 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHH
Q 001563 896 TFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFY 930 (1052)
Q Consensus 896 ~f~~l~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~ 930 (1052)
.+..++-.+..||+|..++|-..++..|+-+..++
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~ 42 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHA 42 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHC
Confidence 45677888889999999999999999999999887
No 56
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=21.27 E-value=5.5e+02 Score=27.77 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=61.7
Q ss_pred HHHHHhccCCCCCcchHHhHhhhhhccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccCccCCCCCCccc
Q 001563 148 NQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEE 227 (1052)
Q Consensus 148 ~~lv~Ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~ 227 (1052)
+.+..-|++.+....-.+-+.....+++.++++.--.++..|-+...+.+..+..++|+++..++.-.- -
T Consensus 152 a~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d------~---- 221 (262)
T PF14225_consen 152 ARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD------M---- 221 (262)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc------C----
Confidence 344555555444222233333344666666655433333333333333345677788888888773211 1
Q ss_pred cccccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhhhcccCC
Q 001563 228 FGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLF 280 (1052)
Q Consensus 228 ~~~~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f 280 (1052)
+-| ..++++.-+.++ ...+++..|++.|..+.+..|+..
T Consensus 222 ----~~~-------~~~dlispllrl---L~t~~~~eAL~VLd~~v~~s~s~~ 260 (262)
T PF14225_consen 222 ----RSP-------HGADLISPLLRL---LQTDLWMEALEVLDEIVTRSGSPM 260 (262)
T ss_pred ----CCC-------cchHHHHHHHHH---hCCccHHHHHHHHHHHHhhccccc
Confidence 111 345677766655 467899999999999998887753
No 57
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=20.21 E-value=1.1e+03 Score=25.43 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCChhHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhccCCChhhhhHHH
Q 001563 50 ALTPYALMLASSSLLKQVTE---HSLALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVK 126 (1052)
Q Consensus 50 S~~~~~~f~a~~~L~~~i~~---~~l~~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~ 126 (1052)
|.++-++--|...|...+.+ ..++.++- +.+++|..+|-.+ ..-+... ...+..++|...+.......++.
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev----~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~ 83 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEV----QVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILR 83 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHH----HHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHH
Confidence 45566666677777777776 34555554 5555555555332 2234333 55555666766554332224444
Q ss_pred HHHHHHh--ccCchhHHHHHHHHHHHHHhcc
Q 001563 127 ESTNFLS--QATSDHYAIGLKILNQLVSEMN 155 (1052)
Q Consensus 127 ~i~~~l~--~~~~~~~~~gl~lL~~lv~Ef~ 155 (1052)
.+.+-.. +-....+....+++..+++.+.
T Consensus 84 ~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 84 SLFQNVDVQSLPQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred HHHHhCChhhhhHHHHHHHHHHHHHHHHHhH
Confidence 4432211 1123567888899999988764
Done!