Query 001563
Match_columns 1052
No_of_seqs 170 out of 451
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 15:49:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001563.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_863-867//hhsearch_pdb/001563hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 1.0 1 1 511.1 64.6 899 3-1050 26-1025(1073)
2 4hat_C Exportin-1; heat repeat 1.0 1 1 471.1 76.1 896 3-1050 14-1005(1023)
3 2x19_B Importin-13; nuclear tr 1.0 1 1 388.2 66.8 878 3-1052 22-954 (963)
4 3m1i_C Exportin-1; heat repeat 1.0 1 1 347.6 78.9 902 3-1051 14-1006(1049)
5 2x1g_F Cadmus; transport prote 1.0 1 1 297.1 69.9 883 3-1052 5-966 (971)
6 3ibv_A Exportin-T; karyopherin 1.0 1 1 293.0 67.8 909 3-1052 4-978 (980)
7 3a6p_A Exportin-5; exportin-5, 1.0 1 1 238.0 61.4 602 3-687 9-682 (1204)
8 1w9c_A CRM1 protein, exportin 1.0 1 1 154.2 22.5 251 753-1050 45-317 (321)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 135.7 59.7 780 2-1027 10-823 (852)
10 1wa5_C Importin alpha RE-expor 1.0 1 1 126.6 59.1 617 1-767 1-671 (960)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=1.00 E-value=1 Score=511.09 Aligned_cols=899 Identities=15% Similarity=0.221 Sum_probs=597.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998631159421999999983089815899999999999861--37897889999
Q 001563 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1052)
Q Consensus 3 ~i~~le~~~~~~y~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1052)
+++.||+++.++|+| ++++|++|+++|.+|+++|++|..|..||+.|++++++|||+++|++.|++ +.+|+++|.++
T Consensus 26 Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp SHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 999999999998299-9999999999999987290589999999468998999999999999999764662999999999
Q ss_pred HHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999831998-----2268999999999999851268982432479999999830374048889999999997315
Q 001563 81 RNYLINYLAKRGPE-----LQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1052)
Q Consensus 81 r~~ll~~l~~~~~~-----~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~E~~ 155 (1052)
|+++++++.+.+.+ .++.+++|+++++|.|+|++||+.|+ +++.++.+.++ .++.++..++.+|..+.+|..
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp--~fi~dLv~~~~-~~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP--TFISDIVGASR-TSESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCC--HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999872685323334689999999999999986833160--89999999837-998899999999999999998
Q ss_pred CCC-CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999-9964588686663111010388999999999754454588999999999867245337667877786655655578
Q 001563 156 QPN-PGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIP 234 (1052)
Q Consensus 156 ~~~-~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~P 234 (1052)
... ..++..+.++.+..++.. ++.|+.++..+|++... ..++..+|+++..+++|...+.
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~~~---~~lv~~~L~~L~~~~sWI~i~~--------------- 242 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENSQN---APLVHATLETLLRFLNWIPLGY--------------- 242 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTTTSCTHH---------------
T ss_pred HCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHCCHHH---------------
T ss_conf 5143423088999999999999-99999999987555688---7999999999999998658987---------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-------
Q ss_conf 8740002696179999999731498435999999999730024688992889999999999899985037678-------
Q 001563 235 SAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGL------- 307 (1052)
Q Consensus 235 ~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l------- 307 (1052)
+.++++++.++..+ ...+.++..|.+||.++++.+.+-+ ++.-...+..++..+..+++....+
T Consensus 243 ------i~~~~ll~~L~~~~-L~~~~~r~aA~dcL~eIv~k~~~~~--~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~ 313 (1073)
T 3gjx_A 243 ------IFETKLISTLIYKF-LNVPMFRNVSLKCLTEIAGVSVSQY--EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNG 313 (1073)
T ss_dssp ------HHSSSHHHHHHHHT-SSSHHHHHHHHHHHHHHHHSCSGGG--HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTC
T ss_pred ------HCCCHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf ------60542899999986-6986789999999999996415206--89999999999999988658820278887446
Q ss_pred --CCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC--
Q ss_conf --9941388999997444311341355400085999999999999862211025660899999899841265766789--
Q 001563 308 --ADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGD-- 383 (1052)
Q Consensus 308 --~~~e~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~l~~~~~~~~~~-- 383 (1052)
.|++....+|+++.-+..+|. ..+.+.+.+.+.+....++...+-.. .+.+.+.+++++|..++.++ |.+.+
T Consensus 314 ~~~d~e~~~~l~~~f~~~~e~~~-~lIe~~p~~~~~l~~~l~~ll~~s~~--~d~ei~kitf~fW~~L~~~L-~~e~~~~ 389 (1073)
T 3gjx_A 314 KDDEQNFIQNLSLFLCTFLKEHG-QLLEKRLNLREALMEALHYMLLVSEV--EETEIFKICLEYWNHLAAEL-YRESPFS 389 (1073)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHH-HHHCCSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHH-HHHCCCC
T ss_conf 55149999999999999999999-99835854247999999999998389--91999999999999999999-8614233
Q ss_pred ---C-----------CC---HHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCC---CCCC---HHHHHHHHHHHHHHHC
Q ss_conf ---9-----------64---2554279999999860001011256--8888999---9776---9879999820232110
Q 001563 384 ---A-----------PS---LLDEFVPKITEGFITSRFNSVQAGF--PDDLSDN---PLDN---VELLQDQLDCFPYLCR 438 (1052)
Q Consensus 384 ---~-----------~~---~l~~~~~~I~~~yi~~~l~~~~~~~--~~e~~e~---~~~d---~~~~~~~le~i~~l~r 438 (1052)
. +. ....+..++... +.+||.+|+++. ++|.+|. ..+| ...++...+++.++++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~v-lI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~ 468 (1073)
T 3gjx_A 390 TSASPLLSGSQHFDIPPRRQLYLTVLSKVRLL-MVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTH 468 (1073)
T ss_dssp CCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHH-HHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 34451002221001033899999999999999-99825999423546765126899988613218999999999998704
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 34122899999959999999999851178996224677777999999999983044346788642000004689999998
Q 001563 439 FQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQL 518 (1052)
Q Consensus 439 ~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l 518 (1052)
+.+.++...+.+.+.+..+ ..+++|..++ .++|.++ ++-+.. .++.+. ..|...+-.+
T Consensus 469 l~~~~~~~i~~~~l~~~~~-------~~~~sW~~le----a~~~aig---aIag~~------~~~~E~--~~Lp~vi~~L 526 (1073)
T 3gjx_A 469 LDYVDTEIIMTKKLQNQVN-------GTEWSWKNLN----TLCWAIG---SISGAM------HEEDEK--RFLVTVIKDL 526 (1073)
T ss_dssp HCHHHHHHHHHHHHHHHHT-------SCCCCHHHHH----HHHHHHH---HTTTSS------CHHHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHC-------CCCCCHHHHH----HHHHHHH---HHHCCC------CCCCCC--CHHHHHHHHH
T ss_conf 8889999999999999846-------7888878883----9999999---987727------862100--2299999998
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHC
Q ss_conf 641365554311135607899999999998746675056544---22388899999870-99876889999999997301
Q 001563 519 INVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAM---HSSKQLYARLSELL-GLHDHLLLLNVIVGKIATNL 594 (1052)
Q Consensus 519 ~~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~---~~~~~~~~~l~~~~-G~~~~~~~l~~~l~ki~~~l 594 (1052)
+++.+..-.. -..+++..+++|-+.||.+-... +.. ...+++.++|++.+ |+++ +++++|.+....|-
T Consensus 527 l~L~e~~~~k-----d~k~~vas~i~~vlgrY~~wl~~-h~~~L~~vl~~L~~~m~~~~~~vq~--aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 527 LGLCEQKRGK-----DNKAIIASNIMYIVGQYPRFLRA-HWKFLKTVVNKLFEFMHETHDGVQD--MACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHHHSCSH-----HHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTCCSTTHHH--HHHHHHHHHHHHTG
T ss_pred HCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHH
T ss_conf 6341444434-----12699999999999500799986-7799999999999998449878999--99999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----C
Q ss_conf 687880558999999999984042002377255479999982101899975322353136799999999982367----9
Q 001563 595 KCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE----S 670 (1052)
Q Consensus 595 ~~~~~~~~ii~~al~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~~~~l~~~~~~~~----~ 670 (1052)
.+..... .....|.+..++++..... .-+. .+....+|+++|.++...+ .
T Consensus 599 ~~lv~~~---------------------~~e~~p~i~~il~~~~~~~-~~l~----~~~~~~lyeav~~vi~~~p~~~~~ 652 (1073)
T 3gjx_A 599 RHFVQVQ---------------------VGEVMPFIDEILNNINTII-CDLQ----PQQVHTFYEAVGYMIGAQTDQTVQ 652 (1073)
T ss_dssp GGGTSCC---------------------TTCSSCHHHHHHTSHHHHH-TTCC----HHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHCC---------------------CCCCCHHHHHHHHHHHHHH-HHCC----HHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9875235---------------------5545359999999999999-7469----999999999999999859972029
Q ss_pred HHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 38999956889999997406---997556608999999999999855876204631489899988111047999975300
Q 001563 671 PVKFKSSMDPLLQVFISLES---TPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHW 747 (1052)
Q Consensus 671 ~~~~~~~l~pl~~~~~~i~~---~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l~~~y 747 (1052)
.++++.+|.|+.++|+++.. ++...+.+++..+.+..+++++..+|.++.. .|...+.-++|+ ++++|
T Consensus 653 ~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~--~f~~~~~~i~~~-------~l~~y 723 (1073)
T 3gjx_A 653 EHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGH--PFVIQLGRIYLD-------MLNVY 723 (1073)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHH-------HHHHH
T ss_conf 999999988999999999998621714205838999999999653998845652--579999999999-------99999
Q ss_pred CCCCCHH------------------------HHHHHHHHHHHHCCCCCEECCCCCCC---HHHHHHHHHHHHHHHHHHHC
Q ss_conf 5997137------------------------89999999996412351112478911---35569999999999997650
Q 001563 748 TDTPEVT------------------------TPLLKFMAEFVLNKAQRLTFDSSSPN---GILLFREVSKLIVAYGSRVL 800 (1052)
Q Consensus 748 ~~~~~v~------------------------~~iLkl~~~~~~n~~~ri~f~~~s~~---~~~lf~~~~~ii~~y~~~~~ 800 (1052)
..+++.+ ..|||++..++.+. ..+. ..++-..+..++..|.+
T Consensus 724 ~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~--------~~~~~v~~~~i~pl~~~vl~dY~~--- 792 (1073)
T 3gjx_A 724 KCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRS--------NDPQMVAENFVPPLLDAVLIDYQR--- 792 (1073)
T ss_dssp HHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTC--------SCHHHHHHHTSHHHHHHTHHHHHH---
T ss_pred HHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHC---
T ss_conf 999999999998278411225999998999999999999998147--------978999998678999999998853---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69981116765465699999999982609973345655469970899999999964056824686128648999999999
Q 001563 801 SLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEV 880 (1052)
Q Consensus 801 ~~~~~~~~~~~~~k~i~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~ 880 (1052)
+.|.. +-.++..++.++.+.+++.. .+.++.+++.+|++++.|..+|+.+||+++..||+|+..
T Consensus 793 ~~p~~------r~~evL~l~s~iv~k~~~~~----------~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~ 856 (1073)
T 3gjx_A 793 NVPAA------REPEVLSTMAIIVNKLGGHI----------TAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQA 856 (1073)
T ss_dssp SCGGG------CCTHHHHHHHHHHHHHGGGT----------GGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHH
T ss_pred CCCCC------CCHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 88531------36999999999999988654----------044899999999999999867731296889999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 99553776744897899999999997204888477869999999999999874136899997478899988620999189
Q 001563 881 LFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFP 960 (1052)
Q Consensus 881 ~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 960 (1052)
+++.|+..+.++|++.|+.+++++.||++|..++|+..++.++..+...+.++ .+.++.+. ..++.
T Consensus 857 ~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~--------~~~~~~F~------~~~~~ 922 (1073)
T 3gjx_A 857 VNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE--------EAAAQSFY------QTYFC 922 (1073)
T ss_dssp HHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHH------HHHHH
T ss_conf 99977699983999999999999999918997169999999999999976248--------49999999------99999
Q ss_pred HHHHHHHHHHHCCCCCCHHHCHHHHHH----HHH-------C-------CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Q ss_conf 999999999941677750210335488----881-------6-------9789999999998-03991368899999999
Q 001563 961 EILKTLFEIVLFEDCGNQWSLSRPMLS----LIL-------I-------SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDK 1021 (1052)
Q Consensus 961 ~~l~~~~~~ll~~~~~~~~~~s~~L~~----li~-------~-------~~~~f~~l~~~li-~~q~~~~~~~l~~af~~ 1021 (1052)
.++..+|.+++..+|+..++....++. ++- + ++.+..++..+++ ++.|.-.++++..--..
T Consensus 923 ~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~ 1002 (1073)
T 3gjx_A 923 DILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTG 1002 (1073)
T ss_dssp HHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999971826763104799999999999982773556666678765899999999999974799999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 88343103681238788998999999862
Q 001563 1022 LMADVARSLDSKNRDKFTQNLTVFRHEFR 1050 (1052)
Q Consensus 1022 L~~~i~~~l~~~~r~~F~~nl~~F~~~vr 1050 (1052)
|.+ ...+..+|+..+..|+..+|
T Consensus 1003 l~~------~~~d~~~f~~~lrDFli~~k 1025 (1073)
T 3gjx_A 1003 LFS------LNQDIPAFKEHLRDFLVQIK 1025 (1073)
T ss_dssp HHH------STTCHHHHHHHHHHHHHHHT
T ss_pred HHH------HCCCHHHHHHHHHHHHHHHH
T ss_conf 998------02889999999999999999
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=471.13 Aligned_cols=896 Identities=14% Similarity=0.197 Sum_probs=606.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998631159421999999983089815899999999999861--37897889999
Q 001563 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1052)
Q Consensus 3 ~i~~le~~~~~~y~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1052)
+++.||++++.+|+|++ ++|++|+++|.+|+++|++|..|..||+.+++++++|+|+++|++.|++ +.+|+++|.++
T Consensus 14 dv~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~I 92 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1023)
T ss_dssp CHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999849995-99999999999987195488899999538998899999999999999761112999999999
Q ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999998319982-----268999999999999851268982432479999999830374048889999999997315
Q 001563 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1052)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~E~~ 155 (1052)
|+++++++.+.+.+. ++++++|++.+++.|+|++||+.|+ +++.++.+.++ .+..++..++.+|..+.+|..
T Consensus 93 r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp--~~l~dL~~~l~-~~~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCH--HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999865785222231999999999999999985733232--89999999856-997789999999999999998
Q ss_pred C-CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9-999964588686663111010388999999999754454588999999999867245337667877786655655578
Q 001563 156 Q-PNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIP 234 (1052)
Q Consensus 156 ~-~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~P 234 (1052)
. ....++..+.++.+..++.. ++.|++++..+|+.... ..+...+|+++..+++|.+.+..
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~~~~---~~l~~~~L~~l~s~l~WI~i~~i-------------- 231 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQGAS---SSLIVATLESLLRYLHWIPYRYI-------------- 231 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTTSCTHHH--------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCHHHH--------------
T ss_conf 7100001599988899999998-99999999999827898---89999999999999984899875--------------
Q ss_pred CCCCCCCCCCCHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-----HHHHCCC---
Q ss_conf 87400026961799999-99731498435999999999730024688992889999999999899-----9850376---
Q 001563 235 SAWRPVLEDPSTLQIFF-DYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTK-----EILQTGQ--- 305 (1052)
Q Consensus 235 ~~W~~~l~~~~~l~~lf-~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~-----~il~~~~--- 305 (1052)
.++++++.+| ... ..+.++..|.+||.++++.+.+ ++..+..+.+..++.++. .+++...
T Consensus 232 -------~~~~ll~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~--~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~ 300 (1023)
T 4hat_C 232 -------YETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLK 300 (1023)
T ss_dssp -------HSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCC--SSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHH
T ss_pred -------CCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf -------14449999999876--9878899999999999804257--855778899999999999999997379741289
Q ss_pred -----C-CCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf -----7-8994138899999744431134135540008599999999999986221102566089999989984126576
Q 001563 306 -----G-LADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPY 379 (1052)
Q Consensus 306 -----~-l~~~e~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~l~~~~~~ 379 (1052)
+ -.|++....+|+++.-+..+|. ..+.+.+.+.+.+.........+-.. .+.+.+.+++++|..++.++ |
T Consensus 301 ~~~~~~~~~D~e~~~~l~~l~~~~~e~~~-~li~~~~~~~~~l~~~l~~Ll~~~~~--~d~ei~~~tl~FW~~L~~~l-~ 376 (1023)
T 4hat_C 301 ATYANANGNDQSFLQDLAMFLTTYLARNR-ALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADL-F 376 (1023)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHHHHHHHHG-GGGTSCGGGHHHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHH-H
T ss_conf 99862663119999999999999999999-99867910358999999999986189--92889999999999999999-8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCC------CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 6789964255427999999986000101125--68888999------977698799998202321103412289999995
Q 001563 380 LKGDAPSLLDEFVPKITEGFITSRFNSVQAG--FPDDLSDN------PLDNVELLQDQLDCFPYLCRFQYENSGLYIINT 451 (1052)
Q Consensus 380 ~~~~~~~~l~~~~~~I~~~yi~~~l~~~~~~--~~~e~~e~------~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~l 451 (1052)
.+.........+..++... +..|+..|+++ +++|+++. ..|+.+.++..++++.+++++...++.+.+.+.
T Consensus 377 ~e~~~~~~~~~~~~~L~~v-li~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~ 455 (1023)
T 4hat_C 377 YEPLKKHIYEEICSQLRLV-IIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISK 455 (1023)
T ss_dssp TSTTTGGGGHHHHHHHHHH-HHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 5657888899999999999-998657982026677888608887144558899999999999998606878999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999998511789962246777779999999999830443467886420000046899999986413655543111
Q 001563 452 MEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRY 531 (1052)
Q Consensus 452 l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~~~~~~~~~~~~ 531 (1052)
+.+.++ .++.+|..+ |..+|.++ ++.++. .++ ..+..+...+-.++++....-.
T Consensus 456 l~~~l~-------~~~~~W~~~----EA~~~a~g---aIa~~~------~~~--~e~~~l~~vi~~Ll~l~~~~~~---- 509 (1023)
T 4hat_C 456 LARQID-------GSEWSWHNI----NTLSWAIG---SISGTM------SED--TEKRFVVTVIKDLLDLCVKKRG---- 509 (1023)
T ss_dssp HHHHHS-------STTCCHHHH----HHHHHHHH---HTTTSS------CHH--HHHHHHHHHHHHHHHHHHHCCS----
T ss_pred HHHHHC-------CCCCCHHHH----HHHHHHHH---HHHCCC------CCH--HHHHHHHHHHHHHHHHHHCCCC----
T ss_conf 999854-------887888999----89999999---997689------815--5788899999999975410346----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 35607899999999998746675056544223888999998709987688999999999730168788055899999999
Q 001563 532 CELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLF 611 (1052)
Q Consensus 532 ~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~l~~~l~ki~~~l~~~~~~~~ii~~al~Ll 611 (1052)
....+++..+.+|-+.|+..-.. .+ ...+...++++...+. ...+.+...|+.-|
T Consensus 510 -~d~k~~v~~t~~~~lGry~~wl~-~~---------------------~~~L~~vl~~L~~~l~--~~~~~v~~~A~~al 564 (1023)
T 4hat_C 510 -KDNKAVVASDIMYVVGQYPRFLK-AH---------------------WNFLRTVILKLFEFMH--ETHEGVQDMACDTF 564 (1023)
T ss_dssp -HHHHHHHHHHHHHHHHTCHHHHH-HC---------------------HHHHHHHHHHHHHHTT--CSCHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHH-CC---------------------HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_conf -76259999999999999999986-16---------------------7989999999999861--69878999999999
Q ss_pred HHHHCCCCHHH-HHHC------CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHH
Q ss_conf 99840420023-7725------5479999982101899975322353136799999999982367----93899995688
Q 001563 612 LELASGYMTGK-LLLK------LDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE----SPVKFKSSMDP 680 (1052)
Q Consensus 612 ~~l~~~~~~~~-~l~~------~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~~~~l~~~~~~~~----~~~~~~~~l~p 680 (1052)
..++.. |+ .+.. .|.+..+++...... +-+ ..+.+..+|++++.++...+ ..++++.+|.|
T Consensus 565 ~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l----~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~ 636 (1023)
T 4hat_C 565 IKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTT-ADL----QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1023)
T ss_dssp HHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTS----CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHH---HHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHC----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999---8887613577778606999999999998-847----98889999999999998588774489999999885
Q ss_pred HHHHHHHHH----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHH-
Q ss_conf 999999740----699755660899999999999985587620463148989998811104799997530059971378-
Q 001563 681 LLQVFISLE----STPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTT- 755 (1052)
Q Consensus 681 l~~~~~~i~----~~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~- 755 (1052)
+..+|+++. .+| ..+.+++..+.+..+++++..+|.+... .|...++-+ +..++++|..++..+.
T Consensus 637 ~~~~~~~l~~~~~~~~-~~~~d~~~~~~l~~il~~~~~v~~~lg~--~f~~~~~~i-------~~~~l~~y~~~s~~i~~ 706 (1023)
T 4hat_C 637 PNMAWDTIVEQSTANP-TLLLDSETVKIIANIIKTNVAVCTSMGA--DFYPQLGHI-------YYNMLQLYRAVSSMISA 706 (1023)
T ss_dssp HHHHHHHHHHHHHHCT-TGGGCHHHHHHHHHHHHHHHHHHHHHGG--GGHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHCCHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_conf 8999999999872272-5412878899999999999999998268--899999999-------99999999999999999
Q ss_pred -----------------------HHHHHHHHHHHCCCCCEECCCCCCCH---HHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf -----------------------99999999964123511124789113---5569999999999997650699811167
Q 001563 756 -----------------------PLLKFMAEFVLNKAQRLTFDSSSPNG---ILLFREVSKLIVAYGSRVLSLPNAADIY 809 (1052)
Q Consensus 756 -----------------------~iLkl~~~~~~n~~~ri~f~~~s~~~---~~lf~~~~~ii~~y~~~~~~~~~~~~~~ 809 (1052)
.+|||+..++.+. ..++. .++-..+..++..|.++ .|..+
T Consensus 707 ~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~--------~~~~~~~~~~~~~l~~~vl~dY~~~---~~~~r--- 772 (1023)
T 4hat_C 707 QVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA--------RNLDDVVKVLVEPLLNAVLEDYMNN---VPDAR--- 772 (1023)
T ss_dssp HHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC--------SCHHHHHHHTHHHHHHHHHHHHHHS---CGGGC---
T ss_pred HHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHC---CHHHC---
T ss_conf 998479425316888888999999999999999627--------9889999986788999999888728---72010---
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65465699999999982609973345655469970899999999964056824686128648999999999995537767
Q 001563 810 AYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFI 889 (1052)
Q Consensus 810 ~~~~k~i~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l 889 (1052)
-.++..++.++.+.+++.+ .+.++.+++.++++++.|..+|+.+||+++..||+|+..+++.+|..+
T Consensus 773 ---~~~vL~l~s~iv~~~~~~~----------~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~ 839 (1023)
T 4hat_C 773 ---DAEVLNCMTTVVEKVGHMI----------PQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAF 839 (1023)
T ss_dssp ---CHHHHHHHHHHHHHHGGGC----------HHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf ---3889999999999887741----------015689999999999999855622294989999999999999776999
Q ss_pred HCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 44897899999999997204888477869999999999999874136899997478899988620999189999999999
Q 001563 890 LNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEI 969 (1052)
Q Consensus 890 ~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 969 (1052)
.++|++.|+.+++++.||++|.+++|+..++.++..+...+.+.. + .+.++.+. ..++..++..+|.+
T Consensus 840 ~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~---~---~~~~~~f~------~~~~~~~~~~~~~v 907 (1023)
T 4hat_C 840 LELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG---N---VPFANEFH------KNYFFIFVSETFFV 907 (1023)
T ss_dssp HTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC---S---SHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC---C---HHHHHHHH------HHHHHHHHHHHHHH
T ss_conf 749999999999999998089955899999999999999877457---8---48999999------99999999999999
Q ss_pred HHCCCCCCHHHCHHHHHHH-HH---------------------CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9416777502103354888-81---------------------697899999999980-399136889999999988343
Q 001563 970 VLFEDCGNQWSLSRPMLSL-IL---------------------ISEQVFSDLKAQILT-SQPVDQHQRLSVCFDKLMADV 1026 (1052)
Q Consensus 970 ll~~~~~~~~~~s~~L~~l-i~---------------------~~~~~f~~l~~~li~-~q~~~~~~~l~~af~~L~~~i 1026 (1052)
++..+|+..++....++.- +. .++.+..++..+++. +.|...++++..--..|.+.
T Consensus 908 ~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~~- 986 (1023)
T 4hat_C 908 LTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQ- 986 (1023)
T ss_dssp HHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-
T ss_conf 8385165318999999999999997387134467722268887449999999999998748999999999999999973-
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 103681238788998999999862
Q 001563 1027 ARSLDSKNRDKFTQNLTVFRHEFR 1050 (1052)
Q Consensus 1027 ~~~l~~~~r~~F~~nl~~F~~~vr 1050 (1052)
..+..+|+..+..|+..+|
T Consensus 987 -----~~~~~~f~~~lrdfli~~k 1005 (1023)
T 4hat_C 987 -----CKDLVVFKGTLRDFLVQIK 1005 (1023)
T ss_dssp -----TTCHHHHHHHHHHHHHHTT
T ss_pred -----CCCHHHHHHHHHHHHHHHH
T ss_conf -----3999999999999868767
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=388.17 Aligned_cols=878 Identities=12% Similarity=0.106 Sum_probs=575.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998631159421999999983089815899999999999861--37897889999
Q 001563 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1052)
Q Consensus 3 ~i~~le~~~~~~y~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1052)
++++++++++.+|.+++++.|++||++|.+|+++|++|..|..||+.+.+++++++|+++|++.|++ +.+++++|..+
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 101 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL 101 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCHHHHHHH
T ss_conf 59999999999835979899999999999984699999999998657972588999999999999738874999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999998319982268999999999999851268982432479999999830-----374048889999999997315
Q 001563 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ-----ATSDHYAIGLKILNQLVSEMN 155 (1052)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~-----~~~~~~~~gl~lL~~lv~E~~ 155 (1052)
|+++++++.+. ++.+++|++|++.+++.|+|++|++.|+ +++.++.+.+++ .++.++..++.+|..+.+|..
T Consensus 102 r~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 102 KAQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAWP--CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHH
T ss_conf 99999999987-4898899999999999999874831155--59999999986433578747889999999986899885
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999645886866631110103889999999997544545889999999998672453376678777866556555788
Q 001563 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPS 235 (1052)
Q Consensus 156 ~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~P~ 235 (1052)
..+. +..++...+..++. .++.++.+...++.+... +..+...+++++. +|...+...+
T Consensus 179 ~~~~--~~~~r~~~~~~l~~-~~~~i~~ll~~~l~~~~~--~~~~~~~~l~~l~---~wi~~~~~~~------------- 237 (963)
T 2x19_B 179 TSRL--PQYRKGLVRTSLAV-ECGAVFPLLEQLLQQPSS--PSCVRQKVLKCFS---SWVQLEVPLQ------------- 237 (963)
T ss_dssp TCCC-----------CCSGG-GHHHHHHHHHHHHSCTTC--CHHHHHHHHHHHH---HHHTSSCCGG-------------
T ss_pred CCCC--CHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHH---HHHCCCCCCC-------------
T ss_conf 0658--69999999999998-788999999999827788--0579999999999---9982899853-------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCHH
Q ss_conf 74000269617999999973149843599999999973002468899288999999999989998503---767899413
Q 001563 236 AWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQT---GQGLADHDN 312 (1052)
Q Consensus 236 ~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~---~~~l~~~e~ 312 (1052)
..+.+++.+|+.. ..++++..+++|+.++.+.+.+ +.+..++..++.++...++. ...-.+.+.
T Consensus 238 ------~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~ 304 (963)
T 2x19_B 238 ------DCEALIQAAFAAL--QDSELFDSSVEAIVNAISQPDA-----QRYVNTLLKLIPLVLGLQEQLRQAVQNGDMET 304 (963)
T ss_dssp ------GTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTG-----GGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHH
T ss_pred ------CCHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf ------4168999999986--7964799999999999753112-----45779999999999740799999998779899
Q ss_pred HHHHHHHHHHHHHHCCHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHCCCCCCCCC-C
Q ss_conf 8899999744431134135540----0085999999999999862211---025660899999899841265766789-9
Q 001563 313 YHEYCRLLGRFRVNYQLSELVN----VEGYSDWIQLVAEFTLKSLQSW---QWASSSVYYLLGLWSRLVTSVPYLKGD-A 384 (1052)
Q Consensus 313 ~~~~~~~l~rl~~~~~l~~l~~----~~~~~~~l~~l~~~T~~~l~~~---~~~~~s~~~lL~~W~~l~~~~~~~~~~-~ 384 (1052)
+..+|+++.++...++ ..+.. .+.+..+++.+..+ .+.+ ..+++....++++|..++......... .
T Consensus 305 ~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~l~~ll~~----~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~ 379 (963)
T 2x19_B 305 SHGICRIAVALGENHS-RALLDQVEHWQSFLALVNMIMFC----TGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQ 379 (963)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHH----HTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHH----HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999869-99973755658999999999999----758888872034544129999999999986234445
Q ss_pred C---CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6---42554279999999860001011256888899997769879----9998202321103412289999995999999
Q 001563 385 P---SLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELL----QDQLDCFPYLCRFQYENSGLYIINTMEPILQ 457 (1052)
Q Consensus 385 ~---~~l~~~~~~I~~~yi~~~l~~~~~~~~~e~~e~~~~d~~~~----~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~ 457 (1052)
+ ..+..+..++....+ .++..++.. +.+++..||.+.+ ....+.+..+++..+.++.+.+.+.+.+.++
T Consensus 380 ~~~~~~~~~~l~~l~~~ll-~~~~~p~~~---~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~ 455 (963)
T 2x19_B 380 AVYQQVYRPVYFQLVDVLL-HKAQFPSDE---EYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLT 455 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHSCCCHH---HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 7889999999999999999-998099830---226777638999999999999999999997068999999999999997
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCH
Q ss_conf 99998511789962246777779999999999830443467886420000046899999986-41365554311135607
Q 001563 458 SYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLI-NVTDSGLHSQRYCELSK 536 (1052)
Q Consensus 458 ~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~-~~~~~~~~~~~~~~~s~ 536 (1052)
.| ..+.+|... + -. +...|++..+-... . +..+. .++..+ ++.+ ..
T Consensus 456 ~~-----~~~~~w~~~---e-aa---l~al~~i~~~~~~~-----~----~~~l~-~l~~~l~~l~~-----------~~ 502 (963)
T 2x19_B 456 SS-----EEPYSWQHT---E-AL---LYGFQSIAETIDVN-----Y----SDVVP-GLIGLIPRISI-----------SN 502 (963)
T ss_dssp TC-----CCSCCHHHH---H-HH---HHHHHHHTTSCCSS-----C----CSHHH-HHHHHGGGSCC-----------CS
T ss_pred HC-----CCCCCHHHH---H-HH---HHHHHHHHHHCCCH-----H----HHHHH-HHHHHHHHCCC-----------CC
T ss_conf 25-----799866799---8-99---99999997043822-----4----67899-99999985799-----------85
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 89999999999874667505654422388899999870998768899999999973016878805589999999999840
Q 001563 537 QRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELAS 616 (1052)
Q Consensus 537 ~~l~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~l~~~l~ki~~~l~~~~~~~~ii~~al~Ll~~l~~ 616 (1052)
|++..+.+|++.+|+... .++ ...+..++.++...+.. ++|...|...|..++.
T Consensus 503 ~~vr~~~~~~l~~~~~~l-~~~---------------------~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~ 556 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWL-ADH---------------------PVMINSVLPLVLHALGN----PELSVSSVSTLKKICR 556 (963)
T ss_dssp HHHHHHHHHHHHHTHHHH-HHC---------------------HHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHC---------------------HHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHH
T ss_conf 899999999999888888-758---------------------89899999999987178----4689999999999999
Q ss_pred CCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 420023772554799999821018999753223-531367999999999823---6793899995688999999740699
Q 001563 617 GYMTGKLLLKLDTIKFIVANHTREHFPFLEEYR-CSRSRTTFYYTIGWLIFM---EESPVKFKSSMDPLLQVFISLESTP 692 (1052)
Q Consensus 617 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~r~~~~~~l~~~~~~---~~~~~~~~~~l~pl~~~~~~i~~~~ 692 (1052)
. ++... .|.+..+++.... .++.+. ..+.|..+|++++.++.. +....|+..+|.|+...|.++..++
T Consensus 557 ~---~~~~l-~p~~~~il~~l~~----~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 628 (963)
T 2x19_B 557 E---CKYDL-PPYAANIVAVSQD----VLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI 628 (963)
T ss_dssp H---TGGGC-TTTHHHHHHHHHH----HHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred H---HHHHH-HHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9---89987-7669999999999----86357898488999999999999629999999999999989999999998278
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
Q ss_conf 755660899999999999985587620463--------------------148989998811104799997530059971
Q 001563 693 DSMFRTDAVKCALIGLMRDLRGIAMATNSR--------------------RTYGLLFDWLYPAHMPLLLKGISHWTDTPE 752 (1052)
Q Consensus 693 ~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~--------------------~~~~~lf~~i~p~~~~~~~~l~~~y~~~~~ 752 (1052)
.+++.+..+...++++.+++++.... ..+..+ +...++++..+++.|.+++.
T Consensus 629 ----~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~ 700 (963)
T 2x19_B 629 ----PNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV----LQQVFQLIQKVLSKWLNDAQ 700 (963)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHCCCCHH
T ss_conf ----9877899999999999999977489864332223221247777889946999----99999999999985667468
Q ss_pred HHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 37899999999964123511124789113556999999999999765069981116765465699999999982609973
Q 001563 753 VTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYV 832 (1052)
Q Consensus 753 v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k~i~~~l~il~~~l~~~~v 832 (1052)
+...+.+++..++..-+. .. +-.+-..+..++..|... . ...++.+++.++.
T Consensus 701 v~e~~~~~l~~~~~~~~~-------~~-~~~l~~~~~~l~~~~~~~-------~---------~~~~l~l~~~li~---- 752 (963)
T 2x19_B 701 VVEAVCAIFEKSVKTLLD-------DF-APMVPQLCEMLGRMYSTI-------P---------QASALDLTRQLVH---- 752 (963)
T ss_dssp HHHHHHHHHHHHHHHSSS-------TT-GGGHHHHHHHHHHHHHHS-------C---------CHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHCC-------CC-CCCHHHHHHHHHHHHHCC-------C---------CCHHHHHHHHHHH----
T ss_conf 999999999999975010-------34-240799999999998757-------8---------5089999999999----
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 34565546997089999999996405682468612864899999999999553776744897899999999997204888
Q 001563 833 NFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLD 912 (1052)
Q Consensus 833 nfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~ 912 (1052)
.||....++ +.+.+++..+++.++.+..+++.++|+++..||.++..+++.++..+.. ++..|..++.++.+|+++.+
T Consensus 753 ~f~~~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~ 830 (963)
T 2x19_B 753 IFAHEPAHF-PPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-ERLDVKAVFQCAVLALKFPE 830 (963)
T ss_dssp HHTTCTTTC-HHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSC
T ss_pred HHCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCC-CCCCHHHHHHHHHHHCCCCC
T ss_conf 857780137-8999999999999999986276558638999999999999758398729-85147999999999757897
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH-HCHHHHHHHHHC
Q ss_conf 4778699999999999998741368999974788999886209991899999999999416777502-103354888816
Q 001563 913 TNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQW-SLSRPMLSLILI 991 (1052)
Q Consensus 913 ~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~-~~s~~L~~li~~ 991 (1052)
+++++.|+.++..+.++.. + . +. ..+++ ...+..++..+|..+.++.++..| .++..|+.++..
T Consensus 831 ~~~~~~~l~~l~~l~~~~~-----~-~---~~---~~~~~---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~ 895 (963)
T 2x19_B 831 APTVKASCGFFTELLPRCG-----E-V---ES---VGKVV---QEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKH 895 (963)
T ss_dssp HHHHHHHHHHHHHHGGGTT-----S-S---CH---HHHHT---TTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-----C-H---HH---HHHHH---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999985189-----7-3---78---99999---9979999999999853359846778899999999997
Q ss_pred CHHHHHHHHHHHHHCCC-H--HHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 97899999999980399-1--3688999999-998834310368123878899899999986239
Q 001563 992 SEQVFSDLKAQILTSQP-V--DQHQRLSVCF-DKLMADVARSLDSKNRDKFTQNLTVFRHEFRVK 1052 (1052)
Q Consensus 992 ~~~~f~~l~~~li~~q~-~--~~~~~l~~af-~~L~~~i~~~l~~~~r~~F~~nl~~F~~~vr~~ 1052 (1052)
+|+.+.++..+++..+. | ...+.-.+.| .+|+ ..+.++.+|++.+..|...+|+.
T Consensus 896 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~------~~~~~~~~f~~~l~~F~~~~r~~ 954 (963)
T 2x19_B 896 CFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQIL------RERVNKRRVKEMVKEFTLLCRGL 954 (963)
T ss_dssp SHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHT------CSSCCHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 719999999998463689977589999999999999------97708188999999999997185
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=347.60 Aligned_cols=902 Identities=15% Similarity=0.205 Sum_probs=559.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998631159421999999983089815899999999999861--37897889999
Q 001563 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1052)
Q Consensus 3 ~i~~le~~~~~~y~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1052)
++++++++++.+|+|. ++.|++||++|.+|+++|++|..|..||+++++++++|+|+.+|++.|++ ..+++++|..|
T Consensus 14 ~~~~l~~~l~~~~~p~-~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i 92 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1049)
T ss_dssp CHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 5999999999986899-389999999999988395699999999862998899999999999999760704999999999
Q ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999998319982-----268999999999999851268982432479999999830374048889999999997315
Q 001563 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1052)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~E~~ 155 (1052)
|+++++++.+...+. +++|+++++.+++.|+|++|++.|+ +++.++.+.++ .+..++..++.+|..+.+|..
T Consensus 93 r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998627762000002899999999999999976811154--79999999871-585889999999999999998
Q ss_pred ---CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---99999645886866631110103889999999997544545889999999998672453376678777866556555
Q 001563 156 ---QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQ 232 (1052)
Q Consensus 156 ---~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~ 232 (1052)
..+.+.....+.| ..|++ .++.||..+...++.... ..+...+|+++.++++|...+..
T Consensus 170 ~~~~~~~~~~r~~~lk--~~l~~-~~~~i~~~~~~~l~~~~~---~~~~~~aL~~l~~~l~wi~~~~~------------ 231 (1049)
T 3m1i_C 170 DFSAEQMTQAKALHLK--NSMSK-EFEQIFKLCFQVLEQGSS---SSLIVATLESLLRYLHWIPYRYI------------ 231 (1049)
T ss_dssp TSCTTTSCHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTTTSCTHHH------------
T ss_pred HHCCHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHCCHHHH------------
T ss_conf 7260013268999999--99999-999999999999986688---89999999999999860889988------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHH-HHHHHH----HHHHHHHHH-HHHCCC-
Q ss_conf 7887400026961799999997314984359999999997300246889928-899999----999998999-850376-
Q 001563 233 IPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDA-ARSKFL----AHLMTGTKE-ILQTGQ- 305 (1052)
Q Consensus 233 ~P~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~-~~~~~l----~~~l~~~~~-il~~~~- 305 (1052)
.++.+++.+++.+. .+++++..+++||.++++.+- +... .....+ ..++..+.. +++...
T Consensus 232 ---------~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~---~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~ 298 (1049)
T 3m1i_C 232 ---------YETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKI---PQDNDLIKRQTVLFFQNTLQQIATSVMPVTAD 298 (1049)
T ss_dssp ---------HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCC---CTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred ---------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf ---------60559999999868-987679999999999994889---95034688999999999999998862798541
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf --------789941388999997444311341355400085999999999999862211025660899999899841265
Q 001563 306 --------GLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSV 377 (1052)
Q Consensus 306 --------~l~~~e~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~l~~~~ 377 (1052)
+-.+++.+..+|+++..+...+ ...+...+.+.+++..+..+...+.... +.+....++++|..++..+
T Consensus 299 l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l 375 (1049)
T 3m1i_C 299 LKATYANANGNDQSFLQDLAMFLTTYLARN-RALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADL 375 (1049)
T ss_dssp HHHHHHHTCTTHHHHHHHHHHHHHHHHHHH-HHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHH
T ss_conf 787744577102899999999999999999-9998288214799999999999988689--0899999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCC---CCCCHH---HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 766789964255427999999986000101125--68888999---977698---7999982023211034122899999
Q 001563 378 PYLKGDAPSLLDEFVPKITEGFITSRFNSVQAG--FPDDLSDN---PLDNVE---LLQDQLDCFPYLCRFQYENSGLYII 449 (1052)
Q Consensus 378 ~~~~~~~~~~l~~~~~~I~~~yi~~~l~~~~~~--~~~e~~e~---~~~d~~---~~~~~le~i~~l~r~~~~~t~~~L~ 449 (1052)
+...........+..++... +..+|..++.. ..+|++|. ..+|.+ .++...+.+-.+++..+.++.+.+.
T Consensus 376 -~~~~~~~~~~~~~l~~Lv~~-ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~ 453 (1049)
T 3m1i_C 376 -FYEPLKKHIYEEICSQLRLV-IIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMI 453 (1049)
T ss_dssp -HHSTTCGGGGHHHHHHHHHH-HHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -HHCHHHHHHHHHHHHHHHHH-HHHHCCCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf -74635899999999999999-9986589962000057998504865312227999999999999988369899999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 95999999999985117899622467777799999999998304434678864200000468999999864136555431
Q 001563 450 NTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQ 529 (1052)
Q Consensus 450 ~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~~~~~~~~~~ 529 (1052)
+.+.+.++ .+..+|...+ -..|+++ ++.++. .+..+. ..+...+-.+..+......
T Consensus 454 ~~l~~~l~-------~~~~~W~~~e----aal~alg---sia~~~------~~~~e~--~~l~~v~~~l~~l~~~~~~-- 509 (1049)
T 3m1i_C 454 SKLARQID-------GSEWSWHNIN----TLSWAIG---SISGTM------SEDTEK--RFVVTVIKDLLDLTVKKRG-- 509 (1049)
T ss_dssp HHHHHHHT-------SSSCCHHHHH----HHHHHHH---HTTTSS------CHHHHH--HHHHHHHHHHHHHTTSSCS--
T ss_pred HHHHHHHC-------CCCCCHHHHH----HHHHHHH---HHHCCC------CCHHHH--HHHHHHHHHHHHHHHHHCC--
T ss_conf 99998727-------7878989999----9999999---986023------762557--9999999999987765435--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 11356078999999999987466750565442238889999987099876889999999997301687880558999999
Q 001563 530 RYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLS 609 (1052)
Q Consensus 530 ~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~l~~~l~ki~~~l~~~~~~~~ii~~al~ 609 (1052)
....|++..+.+|.+.+|.... ..+ . ..+..+++++...+. ..+++|...|..
T Consensus 510 ---~~~~~~v~~~~~~~lgry~~~~-~~~-----~----------------~~l~~vl~~ll~~l~--~~~~~V~~~A~~ 562 (1049)
T 3m1i_C 510 ---KDNKAVVASDIMYVVGQYPRFL-KAH-----W----------------NFLRTVILKLFEFMH--ETHEGVQDMACD 562 (1049)
T ss_dssp ---HHHHHHHHHHHHHHHHHCHHHH-HHC-----H----------------HHHHHHHHHHHHHTT--SSCHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHH-HHH-----H----------------HHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_conf ---6654999988999999779999-867-----8----------------999999999999861--898789999999
Q ss_pred HHHHHHCCCCHHH-HHHC------CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CHHHHHHHH
Q ss_conf 9999840420023-7725------5479999982101899975322353136799999999982367----938999956
Q 001563 610 LFLELASGYMTGK-LLLK------LDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE----SPVKFKSSM 678 (1052)
Q Consensus 610 Ll~~l~~~~~~~~-~l~~------~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~~~~l~~~~~~~~----~~~~~~~~l 678 (1052)
.|..++.. |+ .+.. .|.+..+++..... +...+ .+.+..+|++++.++...+ ...++..+|
T Consensus 563 al~~l~~~---~~~~l~~~~~~~~~p~~~~il~~l~~~----~~~~~-~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~ 634 (1049)
T 3m1i_C 563 TFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKT----TADLQ-PQQVHTFYKACGIIISEERSVAERNRLLSDLM 634 (1049)
T ss_dssp HHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHH----HTTSC-HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHHHHCCCCCCCCCHHHHHHHHHHHH----HHHCC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999---889861156778775799999989999----98589-99999999999999975997899999999999
Q ss_pred HHHHHHHHHHHC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHH---HHCC---C
Q ss_conf 889999997406----99755660899999999999985587620463148989998811104799997---5300---5
Q 001563 679 DPLLQVFISLES----TPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKG---ISHW---T 748 (1052)
Q Consensus 679 ~pl~~~~~~i~~----~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l---~~~y---~ 748 (1052)
.|+.++|.++.. ++ ....+++....+..+++++..++.+... .+...++.+++..+.++... ++.. .
T Consensus 635 ~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~~l~~~~~~~~~l~~--~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~ 711 (1049)
T 3m1i_C 635 QLPNMAWDTIVEQSTANP-TLLLDSETVKIIANIIKTNVAVCTSMGA--DFYPQLGHIYYNMLQLYRAVSSMISAQVAAE 711 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGGGSHHHHHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCH-HHHCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 889999999999873164-6404879999999999999999998567--8899999999999999999999899999705
Q ss_pred CC-----C------CHHHHHHHHHHHHHHCCCCCEECCCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99-----7------1378999999999641235111247891135---56999999999999765069981116765465
Q 001563 749 DT-----P------EVTTPLLKFMAEFVLNKAQRLTFDSSSPNGI---LLFREVSKLIVAYGSRVLSLPNAADIYAYKYK 814 (1052)
Q Consensus 749 ~~-----~------~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~---~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k 814 (1052)
+. | .+...+++++..+..+- .....+ .+-..+..++..|.+. .+..+ +.+.+
T Consensus 712 g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~--------~~l~~~~~~~~~~~l~~ll~~~~~~---~~~~~--~~~~l- 777 (1049)
T 3m1i_C 712 GLIATKTPKVRGLRTIKKEILKLVETYISKA--------RNLDDVVKVLVEPLLNAVLEDYMNN---VPDAR--DAEVL- 777 (1049)
T ss_dssp CGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC--------SCHHHHHHHTHHHHHHHHHHHHHHS---CGGGC--CTHHH-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHHHHHC---CCCCC--CHHHH-
T ss_conf 8502210889999999999999999999847--------9779999987899999999988718---96323--68799-
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 69999999998260997334565546997089999999996405682468612864899999999999553776744897
Q 001563 815 GMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNT 894 (1052)
Q Consensus 815 ~i~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~ 894 (1052)
.++..+...+++.+ ++.+..++..+++.++.|..+++..+|+++..||+|+..+.+.||..+..+|+
T Consensus 778 ---~l~~~ii~~~~~~~----------~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~ 844 (1049)
T 3m1i_C 778 ---NCMTTVVEKVGHMI----------PQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPP 844 (1049)
T ss_dssp ---HHHHHHHHHHGGGC----------HHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCH
T ss_pred ---HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCHHHHHCCCH
T ss_conf ---99999999988760----------66689999999999999985242108999999999999999867899975999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 89999999999720488847786999999999999987413689999747889998862099918999999999994167
Q 001563 895 NTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFED 974 (1052)
Q Consensus 895 ~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~ 974 (1052)
+.|..++++..|+++|.++++.+.+++++..+.+...+ .++ .+..+.+. .+++..+++.+|..++...
T Consensus 845 ~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~---~~~---~~~~~~f~------~~~~~~l~~~~~~~l~~~~ 912 (1049)
T 3m1i_C 845 AAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER---MGN---VPFANEFH------KNYFFIFVSETFFVLTDSD 912 (1049)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHH---SCS---CHHHHHHH------HHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH---CCC---HHHHHHHH------HHHHHHHHHHHHHHHHCCH
T ss_conf 99999999999994799816999999999999999876---288---68899999------9999999999999985642
Q ss_pred CCCHH-HCHHHHHHHHHC---------------------CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 77502-103354888816---------------------9789999999998-039913688999999998834310368
Q 001563 975 CGNQW-SLSRPMLSLILI---------------------SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLD 1031 (1052)
Q Consensus 975 ~~~~~-~~s~~L~~li~~---------------------~~~~f~~l~~~li-~~q~~~~~~~l~~af~~L~~~i~~~l~ 1031 (1052)
++.++ ..+..|.-++-. ++.++.++..+++ +..|.-..+....-...|.+ .
T Consensus 913 h~s~~~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~f~~~l~~------~ 986 (1049)
T 3m1i_C 913 HKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTK------Q 986 (1049)
T ss_dssp CGGGHHHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH------C
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH------C
T ss_conf 7521899999999999998627615666671015777874999999999999874899999999999999997------0
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 12387889989999998623
Q 001563 1032 SKNRDKFTQNLTVFRHEFRV 1051 (1052)
Q Consensus 1032 ~~~r~~F~~nl~~F~~~vr~ 1051 (1052)
+..+.+|++.+..|..++|.
T Consensus 987 ~~~~~~f~~~~rdf~~~~~~ 1006 (1049)
T 3m1i_C 987 YKDLVVFKGTLRDFLVQIKE 1006 (1049)
T ss_dssp TTCHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 28899999999998486564
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=297.06 Aligned_cols=883 Identities=12% Similarity=0.102 Sum_probs=535.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998631159421999999983089815899999999999861--37897889999
Q 001563 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1052)
Q Consensus 3 ~i~~le~~~~~~y~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1052)
++++++++++.+|+| +++.|++|+++|.+|+++|++|..|..||+.+++++++|+|+++|++.|++ ..+|+++|.++
T Consensus 5 d~~~l~~~l~~~~~~-d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 5 DIARLEEAVVSFYRS-NSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp ------CTHHHHHTS-TTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHH
T ss_conf 599999999987699-9999999999999987497989999999835994989999999999999715864999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHC
Q ss_conf 9999999983199822689999999999998512689824324799999998303------7404888999999999731
Q 001563 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQA------TSDHYAIGLKILNQLVSEM 154 (1052)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~------~~~~~~~gl~lL~~lv~E~ 154 (1052)
|+++++++.+.. +.+++|++|++.+++.|+|++|+ .|+ +++.++.+.++++ ++.++..++.+|..+.+|.
T Consensus 84 r~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi 159 (971)
T 2x1g_F 84 KQKILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-EWP--GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEA 159 (971)
T ss_dssp HHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999867-99878999999999999997062-243--79999999971533456787889999999999859988
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCC
Q ss_conf 599999645886866631110103889999999997544545----88999999999867245--337667877786655
Q 001563 155 NQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDV----ASRLQELALSLCLKCLS--FDFVGTSIDESSEEF 228 (1052)
Q Consensus 155 ~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~----~~~l~~~~L~l~~~~Ls--w~f~~~~~de~~~~~ 228 (1052)
.+.+ +. .+....+..++. .++.++.+...++.....+. ...+...+++++..++. |.+.+
T Consensus 160 ~~~~-~~--~~r~~~~~~l~~-~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---------- 225 (971)
T 2x1g_F 160 QVIH-TS--VKRVVLRAEIAK-RVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---------- 225 (971)
T ss_dssp HHCC-CS--SCHHHHHHHHHT-THHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----------
T ss_pred HCCC-CH--HHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----------
T ss_conf 2468-57--899999999998-799999999999855467888864236799999999999825783865----------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHH----HH-----------HCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6555788740002696179999999----73-----------14984359999999997300246889928899999999
Q 001563 229 GTVQIPSAWRPVLEDPSTLQIFFDY----YA-----------ITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHL 293 (1052)
Q Consensus 229 ~~~~~P~~W~~~l~~~~~l~~lf~~----y~-----------~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~ 293 (1052)
..+.+++.+|++ +. ...++++..+++|+.++.+.+. ..++...+..+
T Consensus 226 -------------~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-----~~~~~~~~~~l 287 (971)
T 2x1g_F 226 -------------GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPD-----CHNYPKTAFVL 287 (971)
T ss_dssp -------------GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSG-----GGGCHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHH
T ss_conf -------------663199999864355302323566555676774799999999999976801-----13208899999
Q ss_pred HHHHHHHHHC---CCCCCC---CHHHHHHHHHHHHHHHHCCHHHHH----C-----CCCHHHHHHHHHHHHHHHHHHH--
Q ss_conf 9989998503---767899---413889999974443113413554----0-----0085999999999999862211--
Q 001563 294 MTGTKEILQT---GQGLAD---HDNYHEYCRLLGRFRVNYQLSELV----N-----VEGYSDWIQLVAEFTLKSLQSW-- 356 (1052)
Q Consensus 294 l~~~~~il~~---~~~l~~---~e~~~~~~~~l~rl~~~~~l~~l~----~-----~~~~~~~l~~l~~~T~~~l~~~-- 356 (1052)
+.++..+... ...-.+ ++....+|+++.++..++. ..+. + .+.+..++..+ ..+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~l----l~~~~~~~~ 362 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHS-TLLLSGITSADPELSILVHRIVQEI----LHCTDKPGI 362 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTH-HHHHHHHHTCCHHHHHHHHHHHHHH----HHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHH----HHHHCCCCC
T ss_conf 99999868999999856565406899999999999999999-9999873157653549999999999----999758888
Q ss_pred -CCCCCCHHHHHHHHHHHHCCCC-CC-CCCCC---CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH----
Q ss_conf -0256608999998998412657-66-78996---42554279999999860001011256888899997769879----
Q 001563 357 -QWASSSVYYLLGLWSRLVTSVP-YL-KGDAP---SLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELL---- 426 (1052)
Q Consensus 357 -~~~~~s~~~lL~~W~~l~~~~~-~~-~~~~~---~~l~~~~~~I~~~yi~~~l~~~~~~~~~e~~e~~~~d~~~~---- 426 (1052)
..+++.....+++|..+..... .. ....+ ..+..+..++....+ .++..++ .+|.+++..+|++.+
T Consensus 363 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~p~---~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 363 YPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV-RKSEQPD---EKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp TTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH-HHTSCCC---TTTTSCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCC---CCCCCCCCHHHHHHHHHHH
T ss_conf 88631245878999999999997413310008999999999999999999-9861999---6243356775799999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99982023211034122899999959999999999851178996224677777999999999983044346788642000
Q 001563 427 QDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEV 506 (1052)
Q Consensus 427 ~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~ 506 (1052)
..-.+.+-.+++...+.+.+.+.+.+.+.++.+.. ...+|. +..-.++..|++..+-... ....
T Consensus 439 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~----~~~~w~-------~~eaal~~l~~iae~~~~~-----~~~~ 502 (971)
T 2x1g_F 439 QDISDTFMYCYDVLNDYILEILAAMLDEAIADLQR----HPTHWT-------KLEACIYSFQSVAEHFGGE-----EKRQ 502 (971)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH----CTTCCH-------HHHHHHHHHHHTTTC-----------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHH-------HHHHHHHHHHHHHHHCCHH-----HHHH
T ss_conf 99999999999997099999999999999973468----987389-------9999999999998354803-----3477
Q ss_pred HHHHHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 0046899999986-413655543111356078999999999987466750565442238889999987099876889999
Q 001563 507 LDAELSARVLQLI-NVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNV 585 (1052)
Q Consensus 507 ~d~~L~~~v~~l~-~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~l~~ 585 (1052)
+. .++.++ ++... + ..|++..+.+|.+.+|.... .++. +. ...++..
T Consensus 503 ----l~-~l~~~l~~l~~~--d-------~~~~vr~~a~~~l~~~~~~l-~~~~--------~~---------l~~vl~~ 550 (971)
T 2x1g_F 503 ----IP-RLMRVLAEIPYE--K-------LNVKLLGTALETMGSYCNWL-MENP--------AY---------IPPAINL 550 (971)
T ss_dssp ----HH-HHHHHHHHSCTT--T-------SCHHHHHHHHHHHHHTHHHH-C------------C---------HHHHHHH
T ss_pred ----HH-HHHHHHHHCCCC--C-------CCHHHHHHHHHHHHHHHHHH-HCCH--------HH---------HHHHHHH
T ss_conf ----99-999999856765--3-------67899999999999878888-6088--------98---------9999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHH
Q ss_conf 9999973016878805589999999999840420023772554799999821018999753223-531367999999999
Q 001563 586 IVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYR-CSRSRTTFYYTIGWL 664 (1052)
Q Consensus 586 ~l~ki~~~l~~~~~~~~ii~~al~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~r~~~~~~l~~~ 664 (1052)
+++.. + ++|...+...|..+++.. +... .|.+..+++.... .++.+. ..+.+..+|++++.+
T Consensus 551 l~~~l--~-------~~v~~~A~~al~~l~~~~---~~~l-~p~~~~ll~~l~~----~l~~~~~~~~~~~~~~~ai~~i 613 (971)
T 2x1g_F 551 LVRGL--N-------SSMSAQATLGLKELCRDC---QLQL-KPYADPLLNACHA----SLNTGRMKNSDSVRLMFSIGKL 613 (971)
T ss_dssp HHHHH--H-------SSCHHHHHHHHHHHHHHC---HHHH-HHHHHHHHHHHHH----HHHSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHH--C-------HHHHHHHHHHHHHHHHHH---HHHC-CCCHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99874--8-------588999999999999998---8862-3007999999999----9727899928999999999999
Q ss_pred HHC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHH
Q ss_conf 823---679389999568899999974069975566089999999999998558762046314--------898999881
Q 001563 665 IFM---EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRT--------YGLLFDWLY 733 (1052)
Q Consensus 665 ~~~---~~~~~~~~~~l~pl~~~~~~i~~~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~--------~~~lf~~i~ 733 (1052)
+.. +....++..++.|+...|.++..++. .+++.+..++..+..+.|++.+...... ...+ .-+.
T Consensus 614 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~---~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 689 (971)
T 2x1g_F 614 MSLLRPEEIPKYLDIIVSPCFEELQAICQADS---KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPV-LLVM 689 (971)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHTC-------------CC-HHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-HHHH
T ss_conf 97299999999999999899999999985689---9822599999999999999841677768533345678836-9999
Q ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 11047999975300599713789999999996412351112478911355699999999999976506998111676546
Q 001563 734 PAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKY 813 (1052)
Q Consensus 734 p~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~ 813 (1052)
+..++++..+++.|.+++.++..+.+++..++..-+. .+ .| .+-..+..++..|.. .. .
T Consensus 690 ~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~---~p---~l~~~~~~l~~~~~~-------~~------~ 748 (971)
T 2x1g_F 690 QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF---QP---MLQDLCLFIVASFQT-------RC------C 748 (971)
T ss_dssp HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-------CT---HHHHHHHHHHHHCC---------C------C
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--HC---CC---CHHHHHHHHHHHHHC-------CC------C
T ss_conf 9999999999986436378999999999999986144--04---25---278999999999866-------88------3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5699999999982609973345655469970899999----999964056824686128648999999999995537767
Q 001563 814 KGMWICFTILARALAGNYVNFGVFELYGDRALSDALD----IALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFI 889 (1052)
Q Consensus 814 k~i~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~----~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l 889 (1052)
. ..+.++..++.+ ||....+. +.+.+.+. .+++++-..+.++....|+++..||.|+..+...+|..+
T Consensus 749 ~---~~l~l~~~~i~~----~~~~~~~~-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~ 820 (971)
T 2x1g_F 749 A---PTLEISKTAIVM----FFKDEGCK-PLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVL 820 (971)
T ss_dssp H---HHHHHHHHHHTT----CCC------HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGG
T ss_pred H---HHHHHHHHHHHH----HCCCCCHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 4---999999999999----58890058-999999999999999998606546776484489999999999998685998
Q ss_pred HCCCHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 4489789-999999999720488847786999999999999987413689999747889998862099918999999999
Q 001563 890 LNLNTNT-FMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFE 968 (1052)
Q Consensus 890 ~~l~~~~-f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 968 (1052)
.. ++. +..++.+...++++.+++..+.++..+..+.+.- +. .+..+ +.+. .....+++.++.
T Consensus 821 ~~--s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~------~~---~~~~~---~~~~---~~g~~l~~~l~~ 883 (971)
T 2x1g_F 821 ED--KTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQS------RN---HAHVT---EVVL---ATGEQTLYTAMM 883 (971)
T ss_dssp GC--TTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH------TT---CHHHH---HHHH---HHHHHHHHHHHH
T ss_pred CC--CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC------CC---HHHHH---HHHH---HHHHHHHHHHHH
T ss_conf 18--82128999999999828787789999999999998607------85---68999---9999---967999999999
Q ss_pred HHHCCCCCCHH-HCHHHHHHHHHCCHHHHHHHHHHHHHC--CC-HHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99416777502-103354888816978999999999803--99-13688999999-998834310368123878899899
Q 001563 969 IVLFEDCGNQW-SLSRPMLSLILISEQVFSDLKAQILTS--QP-VDQHQRLSVCF-DKLMADVARSLDSKNRDKFTQNLT 1043 (1052)
Q Consensus 969 ~ll~~~~~~~~-~~s~~L~~li~~~~~~f~~l~~~li~~--q~-~~~~~~l~~af-~~L~~~i~~~l~~~~r~~F~~nl~ 1043 (1052)
.+...-.+... .++..|..++..+|+.+..+..+.+.. .| ....+.-.+.| .+|+. .|.++.+|++.++
T Consensus 884 ~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~------~~~~~r~~~~~~~ 957 (971)
T 2x1g_F 884 CVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIK------EKVNKRLLQQHLS 957 (971)
T ss_dssp HHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHH------CSSCHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH------HHHCHHHHHHHHH
T ss_conf 7564697567899999999999978599999999982636899876999999999999999------8847176999999
Q ss_pred HHHHHHHCC
Q ss_conf 999986239
Q 001563 1044 VFRHEFRVK 1052 (1052)
Q Consensus 1044 ~F~~~vr~~ 1052 (1052)
.|....|++
T Consensus 958 ~f~~~~r~~ 966 (971)
T 2x1g_F 958 EMAMKTRGL 966 (971)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHCCC
T ss_conf 999998074
No 6
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=292.96 Aligned_cols=909 Identities=11% Similarity=0.097 Sum_probs=534.1
Q ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCHH----
Q ss_conf 4899999999982599-999999999998631159421999999983089--815899999999999861378978----
Q 001563 3 SLAQLEALCERLYNSQ-DSVERAHAENTLKCFSVNTDYISQCQFILDNAL--TPYALMLASSSLLKQVTEHSLALQ---- 75 (1052)
Q Consensus 3 ~i~~le~~~~~~y~~~-~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~--~~~~~f~a~~~L~~~i~~~~l~~~---- 75 (1052)
++++++++.+..|.|. +++.|++|+++|.+|+++|++|..|..||.+++ +++++|||+++|++.|+ .++++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~--~l~~e~~~~ 81 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR--EWNNESNLL 81 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH--HCCTTTSHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--HCCHHHHHH
T ss_conf 999999999998489999999999999999987394599999999837999989999999999999987--588201088
Q ss_pred HHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHH
Q ss_conf 89999999999998319-982268999999999999851268982432479999999830374-0488899999999973
Q 001563 76 LRLDIRNYLINYLAKRG-PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATS-DHYAIGLKILNQLVSE 153 (1052)
Q Consensus 76 ~k~~lr~~ll~~l~~~~-~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~-~~~~~gl~lL~~lv~E 153 (1052)
++..+|+++++++.+.. .+.++++++|++.+++.++|+.||+.|+ +++.++.+.++.++. ......+++|..+.+|
T Consensus 82 ~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp--~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EE 159 (980)
T 3ibv_A 82 ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWN--DFFASLQGVIAASSQSEFSNFYLKVLLSIGDE 159 (980)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999970577786799999999999999986854475--39999999856897268999999999985899
Q ss_pred CCCCCCCCCHHHHHHH---HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 1599999645886866---6311101038899999999975445458899999999986724533766787778665565
Q 001563 154 MNQPNPGLPSTHHRRV---ACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (1052)
Q Consensus 154 ~~~~~~~~~~~~hrk~---~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~ 230 (1052)
.......++...+.|. +..+++.+++.|+..+..+|.+........+...+|+++..+++|...+.
T Consensus 160 v~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~----------- 228 (980)
T 3ibv_A 160 IADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININL----------- 228 (980)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHH-----------
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH-----------
T ss_conf 972323667887766599999998662889999999999987412889999999999999986527786-----------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 5578874000269617999999973149843599999999973002468899288999999999989998503767-899
Q 001563 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQG-LAD 309 (1052)
Q Consensus 231 ~~~P~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~-l~~ 309 (1052)
+.++++++.+|... ..++++..|.+||.++.+.+.. .+++...+..+ .+.+++..-.. -.|
T Consensus 229 ----------i~~~~ll~~l~~~L--~~~~~r~~A~ecL~ei~~k~~~----~~~k~~li~~l--~L~~~~~~l~~~~~D 290 (980)
T 3ibv_A 229 ----------IVNEPCMNLLYSFL--QIEELRCAACETMTEIVNKKMK----PLEKLNLLNIL--NLNLFFSKSQEQSTD 290 (980)
T ss_dssp ----------HHCHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHH--HHHHHHCC-----CC
T ss_pred ----------HHCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH--HHHHHHHHHHCCCCC
T ss_conf ----------50301899999982--8867799999999999973789----56689999997--579999987445556
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHCCCC---------HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 4138899999744431134135540008---------5999999999999862211025660899999899841265766
Q 001563 310 HDNYHEYCRLLGRFRVNYQLSELVNVEG---------YSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYL 380 (1052)
Q Consensus 310 ~e~~~~~~~~l~rl~~~~~l~~l~~~~~---------~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~l~~~~~~~ 380 (1052)
.|....+|+++.-+...+-.. ...+. -..-+..+..+-..+.... +.+.....+.||..++....+.
T Consensus 291 ~d~~~~la~L~~~~ge~l~~~--~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~ 366 (980)
T 3ibv_A 291 PNFDEHVAKLINAQGVELVAI--KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKE 366 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHC
T ss_conf 899999999999999999987--358655552556668999999999999996798--0639999999999999998724
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHH
Q ss_conf 78--99642554279999999860001011256888899997769879999820232----1103412289999995999
Q 001563 381 KG--DAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPY----LCRFQYENSGLYIINTMEP 454 (1052)
Q Consensus 381 ~~--~~~~~l~~~~~~I~~~yi~~~l~~~~~~~~~e~~e~~~~d~~~~~~~le~i~~----l~r~~~~~t~~~L~~ll~~ 454 (1052)
.. ..+.....+.+++... +..|+.-++.. +.++|++.+|++.+.+.+..++. ++...++.+...+.+.+..
T Consensus 367 ~~~~~~~~~~~~~l~~Ll~~-li~k~~yp~d~--~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~ 443 (980)
T 3ibv_A 367 SSSKELSASLKEFLKSLLEA-IIKKMKYDESQ--EWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITS 443 (980)
T ss_dssp TTSCCCCHHHHHHHHHHHHH-HHHTTSCCTTC--CCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH-HHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 42234337899999999999-99872289865--6666655547999999999999999999964849888889999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999999851178996224677777999999999983044346788-642000004689999998641365554311135
Q 001563 455 ILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCS-LESQEVLDAELSARVLQLINVTDSGLHSQRYCE 533 (1052)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~-~~~~~~~d~~L~~~v~~l~~~~~~~~~~~~~~~ 533 (1052)
.+++. .. +++ . .-+.++.-.++..|++-.+-...+.. .++.+.. ..+...+..+++ ... ..
T Consensus 444 ~l~~~---l~--~~~--~--~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~l-p~l~~ll~~ll~---s~i-----~~ 505 (980)
T 3ibv_A 444 SLSTA---AT--LSP--E--NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSP-TVLSQILALVTT---SQV-----CR 505 (980)
T ss_dssp HHHHH---TT--SCH--H--HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCB-CHHHHHHHHHHH---SST-----TT
T ss_pred HHHHH---HC--CCC--C--CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-HHHHHHHHHHHH---CCC-----CC
T ss_conf 99987---15--558--9--9879999999999998765343123667552106-899999999984---788-----88
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 60789999999999874667505654422388899999870998768899999999973016878805589999999999
Q 001563 534 LSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLE 613 (1052)
Q Consensus 534 ~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~l~~~l~ki~~~l~~~~~~~~ii~~al~Ll~~ 613 (1052)
...|++..+..|.+.||.+-.. .++ ..+...++.+....-....++.|...+..+|..
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~-~~~---------------------~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~ 563 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFD-YES---------------------AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYR 563 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGG-TCC---------------------TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-CCC---------------------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9978999999999999999985-193---------------------549999999826002669976599999999999
Q ss_pred HHCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC-----------------CCHHHHHHHHHHHHHHCC-----CCH
Q ss_conf 8404200237725547999998210189997532235-----------------313679999999998236-----793
Q 001563 614 LASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRC-----------------SRSRTTFYYTIGWLIFME-----ESP 671 (1052)
Q Consensus 614 l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~~-----------------~~~r~~~~~~l~~~~~~~-----~~~ 671 (1052)
+++. |+... .|....+++..... ......|.. ...+..+|+++|.++... ...
T Consensus 564 f~~~---~~~~L-~~~~~~il~~l~~l-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~ 638 (980)
T 3ibv_A 564 FVKS---IKKQV-VNYTESSLAMLGDL-LNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQA 638 (980)
T ss_dssp HHHH---TTTTC-SSSHHHHHHHTTGG-GCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHH---HHHHH-HHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9998---66874-45899999999986-1686788875322221045420367714788999999999927899878999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 899995688999999740699755660899999999999985587620463-1489899988111047999975300599
Q 001563 672 VKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSR-RTYGLLFDWLYPAHMPLLLKGISHWTDT 750 (1052)
Q Consensus 672 ~~~~~~l~pl~~~~~~i~~~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~-~~~~~lf~~i~p~~~~~~~~l~~~y~~~ 750 (1052)
++++.++.|+-..+........+ -.++.. .+..++..+..++++.... .......+.+.+. .+++...++.|..+
T Consensus 639 ~~l~~ll~pl~~~l~~~l~~~~~-~~~~~~--~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~-~~~il~~l~~~~~~ 714 (980)
T 3ibv_A 639 LYCDSLINALIGKANAALSSDLS-ALENII--SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKA-SDEIFLILDRMGFN 714 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---CHHH--HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHH-HHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCCHHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHCCCC
T ss_conf 99999999999999998864135-863888--999999999997316786468888189999999-99999998826786
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEECCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 71378999999999641235111247891135-56999999999999765069981116765465699999999982609
Q 001563 751 PEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGI-LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAG 829 (1052)
Q Consensus 751 ~~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~-~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k~i~~~l~il~~~l~~ 829 (1052)
..|....-+++..++..-+. ... ++-+.+..++..| ....+.+..-++..+.+..++
T Consensus 715 ~~irea~~~~~~r~i~~lg~---------~~~p~lp~~i~~ll~~~-------------~~~e~~~fL~l~~qli~~f~~ 772 (980)
T 3ibv_A 715 EDIRGAVRFTSGRIINVVGP---------DMLPKVPQLISILLNSI-------------DMNELVDVLSFISQLIHIYKD 772 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTHH---------HHTTTHHHHHHHHHHHC-------------CTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999997557---------67987899999998369-------------879999999999999999988
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Q ss_conf 97334565546997089999999996405682---4686128648999999999995537767448--978999999999
Q 001563 830 NYVNFGVFELYGDRALSDALDIALKMTLSIPL---ADILAFRKLTKAYFAFLEVLFSSHITFILNL--NTNTFMHIVGSL 904 (1052)
Q Consensus 830 ~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~---~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l--~~~~f~~l~~~l 904 (1052)
+..++ + +.-+..++..++.++- -|. +.+..-+.+.++||.++..+.......+.-- +...|..++.++
T Consensus 773 ~~~~~--l----~~ll~~l~~~if~~l~-~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l 845 (980)
T 3ibv_A 773 NMMEI--T----NRMLPTLLMRIFSSLS-AAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSI 845 (980)
T ss_dssp TSHHH--H----HHHHHHHHHHHHHHTT-C----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHH
T ss_pred HHHHH--H----HHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 89999--9----9889999999999716-898994799999999999999999998378604521776567899999999
Q ss_pred HH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCHH
Q ss_conf 97-20488847786999999999999987413689999747889998862099918999999999994167775021033
Q 001563 905 ES-GLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSR 983 (1052)
Q Consensus 905 ~~-gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~s~ 983 (1052)
.. +..+.|+...+.|+..+..+++..... +. .| ++.+++ +. +....|.+.+.+.++....-++
T Consensus 846 ~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~----~~--~~---gf~~f~------~~-~~~~~f~~p~~~~f~~~Daq~~ 909 (980)
T 3ibv_A 846 LHFANLVGEPATQKSSIALVSKMVSLWGGK----DG--IA---GFENFT------LS-LTPLCFEMPVNPNFNTRDGQSL 909 (980)
T ss_dssp HHHC-----CHHHHHHHHHHHHHHHC-------------C---CHHHHH------HH-HHHHHHHGGGC----------C
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCC----CC--CH---HHHHHH------HH-HHHHHHHHHCCCCCCHHHHHHH
T ss_conf 998266787489989999999999997799----86--21---799999------99-9999998516988890238899
Q ss_pred HHHHHH-HCCHHHHHHHH----HHHHHCCCHH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 548888-16978999999----9998039913--688999999998834310368123878899899999986239
Q 001563 984 PMLSLI-LISEQVFSDLK----AQILTSQPVD--QHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFRVK 1052 (1052)
Q Consensus 984 ~L~~li-~~~~~~f~~l~----~~li~~q~~~--~~~~l~~af~~L~~~i~~~l~~~~r~~F~~nl~~F~~~vr~~ 1052 (1052)
.+++=| .+-...|+..+ +-|.+..-|. --+.+.+.|.+-+ .......|++-|..|.+..|++
T Consensus 910 ~~~~e~~~~~k~~~~~~g~~~~~~l~~~~lp~~~~~~~~~~~~~~~l-------~~~~~k~f~~~~~~~~~~~~~~ 978 (980)
T 3ibv_A 910 VVLGELAGLQKIILEKLGDIYKSYLVTVYFPTVNFPDVMASEYLQAL-------SNLDSRSFKQFFQKFIQALKSG 978 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC----CCHHHHHHHC-----------------------CHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999962789999999833776898989999999998-------6116236999999999986358
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=237.97 Aligned_cols=602 Identities=13% Similarity=0.155 Sum_probs=358.0
Q ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHH--CCCCHHHHH
Q ss_conf 489999999998259-9999999999998631159421999999983-089815899999999999861--378978899
Q 001563 3 SLAQLEALCERLYNS-QDSVERAHAENTLKCFSVNTDYISQCQFILD-NALTPYALMLASSSLLKQVTE--HSLALQLRL 78 (1052)
Q Consensus 3 ~i~~le~~~~~~y~~-~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~-~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~ 78 (1052)
.+++++++++.+|+| ++++.|++|+++|.+|+++|++|..|..+|. .+.+++++|+|+++|++.|.+ ..+++++|.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999999999858999869999999999998839527999999997138998999999999999998715669999999
Q ss_pred HHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999983199---82268999999999999851268982432479999999830374048889999999997315
Q 001563 79 DIRNYLINYLAKRGP---ELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1052)
Q Consensus 79 ~lr~~ll~~l~~~~~---~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~E~~ 155 (1052)
.||+++++++.+... +.+++|++|++.+++.|+|++||+.|+ +++.++.+.++ ++..++..++.+|..+.+|+.
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--~ll~~L~~~~~-~~~~~~e~~L~iL~~L~Eev~ 165 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--DMLIELDTLSK-QGETQTELVMFILLRLAEDVV 165 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999873034555565799999999999999986813125--89999999864-898899999999999999870
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999996458868666311101038899999999975445---------------45889999999998672453376678
Q 001563 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKS---------------DVASRLQELALSLCLKCLSFDFVGTS 220 (1052)
Q Consensus 156 ~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~---------------~~~~~l~~~~L~l~~~~Lsw~f~~~~ 220 (1052)
..+. ....+.++.+..+++. ++.||..+..+|++... +....++.++|+++.++++|...+..
T Consensus 166 ~~~~-~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i 243 (1204)
T 3a6p_A 166 TFQT-LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI 243 (1204)
T ss_dssp TSCC-SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHH
T ss_pred CCCC-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 6220-6899999999999999-9999999999999987877304520000112244599999999999999842688999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----HHH
Q ss_conf 7778665565557887400026961799999997314984359999999997300246889928899999999----998
Q 001563 221 IDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHL----MTG 296 (1052)
Q Consensus 221 ~de~~~~~~~~~~P~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~----l~~ 296 (1052)
. ++ .+.+++.+|..+ .+++++..|++||.++++.+.+ .+++..++..+ +.+
T Consensus 244 ~-~~------------------~~~ll~~l~~~l--~~~~lr~~A~ecL~~i~s~~~~----~~~~~~li~~l~~~~l~~ 298 (1204)
T 3a6p_A 244 T-AE------------------NCKLLEILCLLL--NEQELQLGAAECLLIAVSRKGK----LEDRKPLMVLFGDVAMHY 298 (1204)
T ss_dssp H-TT------------------TSHHHHHHHHGG--GCTTTHHHHHHHHHHHHTCCSC----HHHHGGGGGGGSHHHHHH
T ss_pred H-HC------------------CCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHH
T ss_conf 8-55------------------552999999975--9888899999999999948898----256789999971689999
Q ss_pred HHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 999850--37678994138899999744431134135540----------008599999999999986221102566089
Q 001563 297 TKEILQ--TGQGLADHDNYHEYCRLLGRFRVNYQLSELVN----------VEGYSDWIQLVAEFTLKSLQSWQWASSSVY 364 (1052)
Q Consensus 297 ~~~il~--~~~~l~~~e~~~~~~~~l~rl~~~~~l~~l~~----------~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~ 364 (1052)
+..... ...++ ++...++++-+++++..++- .+.. .+.+..+++.+..+|.. . +.+...
T Consensus 299 l~~~~~~~~~~~~--~e~d~e~~k~l~~ll~~lg~-~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~----~--~~~vs~ 369 (1204)
T 3a6p_A 299 ILSAAQTADGGGL--VEKHYVFLKRLCQVLCALGN-QLCALLGADSDVETPSNFGKYLESFLAFTTH----P--SQFLRS 369 (1204)
T ss_dssp HHHHHHTCCCCSC--CHHHHHHHHHHHHHHHHHHH-HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS----S--CHHHHH
T ss_pred HHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC----C--CHHHHH
T ss_conf 9998633787887--60789999999999999999-9999981232346716799999999999818----2--078689
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--HCCCCCCCCCCC--CC---CCCCCCCCH-HHH----HHHHHH
Q ss_conf 999989984126576678996425542799999998--600010112568--88---899997769-879----999820
Q 001563 365 YLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGFI--TSRFNSVQAGFP--DD---LSDNPLDNV-ELL----QDQLDC 432 (1052)
Q Consensus 365 ~lL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~~~yi--~~~l~~~~~~~~--~e---~~e~~~~d~-~~~----~~~le~ 432 (1052)
..+++|..+..+... .....+..+.+++..... ..|+.-|+.... .+ +|++..+|. +.+ ++..+.
T Consensus 370 ~~l~fW~~ll~~~~~---~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~ 446 (1204)
T 3a6p_A 370 STQMTWGALFRHEIL---SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEV 446 (1204)
T ss_dssp HHHHHHHHHHSCTTT---TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999706444---65478999899999999999897158644688411343225587089999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHH-H--HHHHHH-----HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 2321103412289999995999999999985-117899622467-7--777999-----999999983044346788642
Q 001563 433 FPYLCRFQYENSGLYIINTMEPILQSYTERA-RMQTGDKSEISV-I--EAKLAW-----IVHIIAAIVKIKQCTGCSLES 503 (1052)
Q Consensus 433 i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~-~~~~~~~~~l~~-~--~e~L~W-----li~i~g~~l~~~~~~~~~~~~ 503 (1052)
+-.+++..+..+...+.+.+...+....... .|..-+...-+. . ...-.| .+..+++++.+-... .+.
T Consensus 447 l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~---~e~ 523 (1204)
T 3a6p_A 447 MRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRT---LNR 523 (1204)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHH---SCT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC---CCC
T ss_conf 99998528899999999999999753400445665322123556545768889999999999999999998401---244
Q ss_pred CCCHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 0000046899999986-413655543111356078999999999987466750565442238889999987099876889
Q 001563 504 QEVLDAELSARVLQLI-NVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLL 582 (1052)
Q Consensus 504 ~~~~d~~L~~~v~~l~-~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~ 582 (1052)
+.....+...++..+ ++.. .. |.+....+..+.++.. |...++ + . ...+
T Consensus 524 -~~l~~~~~~~Ll~~ll~~~~----------~~-p~l~~~~i~~l~~l~~-~~~~~p----~----~---------L~~v 573 (1204)
T 3a6p_A 524 -EEIPVNDGIELLQMVLNFDT----------KD-PLILSCVLTNVSALFP-FVTYRP----E----F---------LPQV 573 (1204)
T ss_dssp -TCCCHHHHHHHHHHHHHCCC----------SC-HHHHHHHHHHHHHHGG-GGGTCG----G----G---------HHHH
T ss_pred -CCCCHHHHHHHHHHHHHCCC----------CC-HHHHHHHHHHHHHHHH-HHHCCC----H----H---------HHHH
T ss_conf -53338999999999983788----------77-5799999999998787-886292----5----7---------9999
Q ss_pred HHHHHHHHHHHCC-----CCC-CCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCC--CCCCCCCCCCCCHH
Q ss_conf 9999999973016-----878-805589999999999840420023772554799999821018--99975322353136
Q 001563 583 LNVIVGKIATNLK-----CYT-ESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTRE--HFPFLEEYRCSRSR 654 (1052)
Q Consensus 583 l~~~l~ki~~~l~-----~~~-~~~~ii~~al~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~l~~~~~~~~r 654 (1052)
++.++..+..... ..+ ...++...+...|..++.... ..+ .|.+..+.+..... ....+ . .+-+
T Consensus 574 L~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~--~~L--~p~~~~i~~~~~~~l~~~~~l--~--~~e~ 645 (1204)
T 3a6p_A 574 FSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP--QLV--LPNFDMLYNHVKQLLSNELLL--T--QMEK 645 (1204)
T ss_dssp HHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH--HHH--GGGHHHHHHHHHHHHHSTTTS--C--HHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHCCCCC--C--HHHH
T ss_conf 9999986156884312466318999999999999999999746--878--789999999999998476514--6--8889
Q ss_pred HHHHHHHHHHHHC--C--CCHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999823--6--7938999956889999997
Q 001563 655 TTFYYTIGWLIFM--E--ESPVKFKSSMDPLLQVFIS 687 (1052)
Q Consensus 655 ~~~~~~l~~~~~~--~--~~~~~~~~~l~pl~~~~~~ 687 (1052)
..+|++++.+... . ....+++.++.|+.+.|.+
T Consensus 646 ~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 646 CALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999636797999999999999999998746
No 8
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=1.00 E-value=1 Score=154.25 Aligned_cols=251 Identities=17% Similarity=0.282 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHCCCCCEECCCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 378999999999641235111247891135---56999999999999765069981116765465699999999982609
Q 001563 753 VTTPLLKFMAEFVLNKAQRLTFDSSSPNGI---LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAG 829 (1052)
Q Consensus 753 v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~---~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k~i~~~l~il~~~l~~ 829 (1052)
+-..+||++..++++. ..+..+ ++-.-+..++..|.+ +.|..+ ++|.+. ++..+.+.+++
T Consensus 45 vKkeiLkLiet~i~~~--------~d~~~v~~~~ippLl~~VL~DY~~---~vp~aR--epeVL~----l~~tii~kl~~ 107 (321)
T 1w9c_A 45 VKRETLKLISGWVSRS--------NDPQMVAENFVPPLLDAVLIDYQR---NVPAAR--EPEVLS----TMAIIVNKLGG 107 (321)
T ss_dssp HHHHHHHHHHHHHTTC--------SCHHHHHHHTHHHHHHHHHHHHHT---SCGGGC--CTHHHH----HHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHH---CCCCCC--CHHHHH----HHHHHHHHHHH
T ss_conf 9999999999999707--------999999998778889999998870---881102--599999----99999999988
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 97334565546997089999999996405682468612864899999999999553776744897899999999997204
Q 001563 830 NYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLK 909 (1052)
Q Consensus 830 ~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~ 909 (1052)
.. .+.++.+++.+|++++.|...|+.+||++|..||+|++.+++.|+..+.++|++.|+.+++++.||+|
T Consensus 108 ~i----------~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~k 177 (321)
T 1w9c_A 108 HI----------TAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFK 177 (321)
T ss_dssp GG----------GGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 71----------44679999999998999883561119398999999999999985999975999999999999999807
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHH
Q ss_conf 88847786999999999999987413689999747889998862099918999999999994167775021033548888
Q 001563 910 GLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSLI 989 (1052)
Q Consensus 910 ~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~s~~L~~li 989 (1052)
|.+++|+..+++++..+...+.+ + .+.++.+- ..++..+++.+|.++++.+|+.++..-..++.-+
T Consensus 178 H~~r~V~e~gL~il~~ll~n~~~----~----~~~~~~Fy------~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~l 243 (321)
T 1w9c_A 178 HTMRNVADTGLQILFTLLQNVAQ----E----EAAAQSFY------QTYFCDILQHIFSVVTDTSHTAGLTMHASILAYM 243 (321)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHH----C----HHHHHHHH------HHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHC----C----HHHHHHHH------HHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHH
T ss_conf 99836889999999999998864----7----18899999------9999999999999984723531489999999999
Q ss_pred H------------C------CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1------------6------9789999999998-0399136889999999988343103681238788998999999862
Q 001563 990 L------------I------SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1050 (1052)
Q Consensus 990 ~------------~------~~~~f~~l~~~li-~~q~~~~~~~l~~af~~L~~~i~~~l~~~~r~~F~~nl~~F~~~vr 1050 (1052)
. . +..+-.++..+++ ++.|.-.++++..--..|.+ . ..+..+|+..+..|+..+|
T Consensus 244 f~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~fv~glf~-----~-~~d~~~Fk~~lrDFLIqiK 317 (321)
T 1w9c_A 244 FNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFS-----L-NQDIPAFKEHLRDFLVQIK 317 (321)
T ss_dssp HHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH-----T-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-----C-CCCHHHHHHHHHHHHHHHH
T ss_conf 999872761454689998514999999999999873898999999999999997-----1-4889999999999999998
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=135.70 Aligned_cols=780 Identities=13% Similarity=0.125 Sum_probs=375.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH--CCCCHHHH
Q ss_conf 04899999999982599999999999998631159421999999983--089815899999999999861--37897889
Q 001563 2 ESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILD--NALTPYALMLASSSLLKQVTE--HSLALQLR 77 (1052)
Q Consensus 2 ~~i~~le~~~~~~y~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~--~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k 77 (1052)
+.++++.++.+..++| +++.|++||+.|.+++++|+.+..+..|+. .+.++.++++|+..|++.+.+ ..+++++|
T Consensus 10 ~~~~~l~~~l~~~~s~-d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~ 88 (852)
T 4fdd_A 10 QGLQQILQLLKESQSP-DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT 88 (852)
T ss_dssp HHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 2399999999987394-989999999999998709988999999985668898679999999999989874477999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999831998226899999999999985126898243247999999983037404888999999999731599
Q 001563 78 LDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQP 157 (1052)
Q Consensus 78 ~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~E~~~~ 157 (1052)
..+|+.+++.+. +.++.|++++..+++.|.+.+|++.|+ +++..+.+.+++.+......++..|..+.+++...
T Consensus 89 ~~ik~~ll~~l~----~~~~~vr~~~a~~i~~ia~~~~~~~wp--~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 89 DFIKSECLNNIG----DSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHTTTT----CSSHHHHHHHHHHHHHHHHHTTTTTCT--THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999874----998999999999999999864813568--99999999870999899999999999999985787
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99964588686663111010388999999999754454588999999999867245337667877786655655578874
Q 001563 158 NPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAW 237 (1052)
Q Consensus 158 ~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~P~~W 237 (1052)
+....+...+...+..+.+...+....+...+++.+..++.... + ..
T Consensus 163 ---------------~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~---------~---------~~ 209 (852)
T 4fdd_A 163 ---------------LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT---------Q---------AL 209 (852)
T ss_dssp ---------------HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC---------H---------HH
T ss_pred ---------------HCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC---------H---------HH
T ss_conf ---------------56343133299999999998567978999999999999986463---------8---------79
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 00026961799999997314984359999999997300246889928899999999998999850376789941388999
Q 001563 238 RPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYC 317 (1052)
Q Consensus 238 ~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~~~~ 317 (1052)
.+ .-++++..++......++..+.. .|
T Consensus 210 ~~--~~~~~l~~l~~~~~d~~~~vr~~---------------------------------------------------a~ 236 (852)
T 4fdd_A 210 ML--HIDSFIENLFALAGDEEPEVRKN---------------------------------------------------VC 236 (852)
T ss_dssp HT--SHHHHHHHHHHHHTCCCHHHHHH---------------------------------------------------HH
T ss_pred HH--HHHHHHHHHHHHCCCCCHHHHHH---------------------------------------------------HH
T ss_conf 98--89999999998717997789999---------------------------------------------------99
Q ss_pred HHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99744431134135540008599999999999986221102566089999989984126576678996425542799999
Q 001563 318 RLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITE 397 (1052)
Q Consensus 318 ~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~~ 397 (1052)
+.+.++...++- .+. .++..+..+....++. .+++.-...+++|..+...... ...+..+...++.
T Consensus 237 ~~L~~l~~~~~~-~~~------~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~-----~~~~~~~~~~l~p 302 (852)
T 4fdd_A 237 RALVMLLEVRMD-RLL------PHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPIC-----KDVLVRHLPKLIP 302 (852)
T ss_dssp HHHHHHHHHCHH-HHG------GGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTH-----HHHHTTTHHHHHH
T ss_pred HHHHHHHHHCHH-HHH------HHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHH
T ss_conf 999999985779-899------8899999999987069--9689999999999998603657-----9887888988999
Q ss_pred HHHHCCCCCCCC-------CCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 998600010112-------56888899-9977698799998202321103412289999995999999999985117899
Q 001563 398 GFITSRFNSVQA-------GFPDDLSD-NPLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGD 469 (1052)
Q Consensus 398 ~yi~~~l~~~~~-------~~~~e~~e-~~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~ 469 (1052)
.. ...|...+. ...+|++| +..++......-...++.+++..++...+.+...+.+.++ ..+
T Consensus 303 ~l-l~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~---------~~~ 372 (852)
T 4fdd_A 303 VL-VNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---------HHE 372 (852)
T ss_dssp HH-HHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT---------CSS
T ss_pred HH-HHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---------CCC
T ss_conf 99-98757867679986698443222456401116999999999999874618789999999999855---------998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 62246777779999999999830443467886420000046899999986413655543111356078999999999987
Q 001563 470 KSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQH 549 (1052)
Q Consensus 470 ~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~ 549 (1052)
+.. .+.-.|.+ |.+..+... .....-..++..++.+++ + ..+++-.+..|.+.+
T Consensus 373 ~~~----R~aa~~al---g~i~~~~~~------~~~~~l~~~l~~l~~~l~------d-------~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 373 WVV----KESGILVL---GAIAEGCMQ------GMIPYLPELIPHLIQCLS------D-------KKALVRSITCWTLSR 426 (852)
T ss_dssp HHH----HHHHHHHH---HHTTTTTHH------HHGGGHHHHHHHHHHHTT------C-------SSHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHH---HHHHHCCHH------HHHHHHHHHHHHHHHHCC------C-------CCHHHHHHHHHHHHH
T ss_conf 899----99999999---999863568------899879999999998717------9-------988999999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHH
Q ss_conf 46675056544223888999998709987688999999999730168788055899999999998404200237725547
Q 001563 550 FRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDT 629 (1052)
Q Consensus 550 ~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~l~~~l~ki~~~l~~~~~~~~ii~~al~Ll~~l~~~~~~~~~l~~~~~ 629 (1052)
+....- ++. .. .-...++..+++ .+. ..++.+...++.-|..++.+.... -.|.
T Consensus 427 l~~~~~-~~~---~~------------~~~~~ll~~L~~----~L~--d~~~~vr~~a~~aL~~l~~~~~~~----l~~~ 480 (852)
T 4fdd_A 427 YAHWVV-SQP---PD------------TYLKPLMTELLK----RIL--DSNKRVQEAACSAFATLEEEACTE----LVPY 480 (852)
T ss_dssp THHHHH-HSC---TT------------TTHHHHHHHHHH----HHT--CSSHHHHHHHHHHHHHHHHHHGGG----GGGG
T ss_pred HHHHHC-CCH---HH------------HHHHHHHHHHHH----HHH--CCCHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_conf 998861-104---78------------999999999999----985--898889999999999999973676----6767
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CC---CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 9999982101899975322353136799999999982-36---7938999956889999997406997556608999999
Q 001563 630 IKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIF-ME---ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCAL 705 (1052)
Q Consensus 630 ~~~l~~~~~~~~~~~l~~~~~~~~r~~~~~~l~~~~~-~~---~~~~~~~~~l~pl~~~~~~i~~~~~~~~~~~~~~~~i 705 (1052)
+..++..... .++... .+.....+.+++.+.- .. ...+|+..+|.++...|..+.... ++ +
T Consensus 481 l~~ll~~L~~----~l~~~~-~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~------~~----~ 545 (852)
T 4fdd_A 481 LAYILDTLVF----AFSKYQ-HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED------KD----L 545 (852)
T ss_dssp HHHHHHHHHH----HHHHCC-HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTC------TT----H
T ss_pred HHHHHHHHHH----HHHHHC-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC------HH----H
T ss_conf 9999999999----998837-4799999999999999742431367899998899999987333046------99----9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHC---------C--CCCCCHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 99999985587620463148989998811104799997530---------0--599713789999999996412351112
Q 001563 706 IGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISH---------W--TDTPEVTTPLLKFMAEFVLNKAQRLTF 774 (1052)
Q Consensus 706 ~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l~~~---------y--~~~~~v~~~iLkl~~~~~~n~~~ri~f 774 (1052)
..+++++..++.+... .+....+-+++..+..+...+.. + ..+.++....++.++.++..-+..+
T Consensus 546 ~~~~~~l~~i~~~~g~--~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~-- 621 (852)
T 4fdd_A 546 FPLLECLSSVATALQS--GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI-- 621 (852)
T ss_dssp HHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG--
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 9999999999999748--679889999999999999999999875338866688761199999999978999874769--
Q ss_pred CCCCCCHHHHHHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 47891135569999--9999999976506998111676546569999999998260997334565546997089999999
Q 001563 775 DSSSPNGILLFREV--SKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIA 852 (1052)
Q Consensus 775 ~~~s~~~~~lf~~~--~~ii~~y~~~~~~~~~~~~~~~~~~k~i~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~~~ 852 (1052)
...+ ..++...... +..+ .. +.-+....++.-+...+.+++ .+.+..++...
T Consensus 622 ----------~~~~~~~~~~~~l~~~-l~~~-~~----~vr~~a~~~l~~l~~~~~~~~----------~~~l~~~lp~l 675 (852)
T 4fdd_A 622 ----------EQLVARSNILTLMYQC-MQDK-MP----EVRQSSFALLGDLTKACFQHV----------KPCIADFMPIL 675 (852)
T ss_dssp ----------HHHHHTCCHHHHHHHH-TTCS-SH----HHHHHHHHHHHHHHHHCGGGT----------GGGHHHHHHHH
T ss_pred ----------HHHHCCCCHHHHHHHH-HCCC-CH----HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_conf ----------9883677189999998-3899-84----499999999999999816888----------98799999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99640568246861286489999999999955377674489789999999999720488847786999999999999987
Q 001563 853 LKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFN 932 (1052)
Q Consensus 853 l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~ 932 (1052)
.+.+ . ..+|+.++..-..+..++....+.+...-+..+..++..+.. ......+...++.++..++..+-.
T Consensus 676 ~~~l----~---~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~--~~~~~~~~~~a~~~igrl~~~~~~ 746 (852)
T 4fdd_A 676 GTNL----N---PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR--PNTPKTLLENTAITIGRLGYVCPQ 746 (852)
T ss_dssp HHTC----C---TTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTC--SSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHC----C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHCHH
T ss_conf 9876----9---420689999999999999971176787899999999998579--988720778899999999986889
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCHHHCHHHHHHHHHCCHHHH----HHHHHHHHHCC
Q ss_conf 4136899997478899988620999189999999999941-677750210335488881697899----99999998039
Q 001563 933 NITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLF-EDCGNQWSLSRPMLSLILISEQVF----SDLKAQILTSQ 1007 (1052)
Q Consensus 933 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~-~~~~~~~~~s~~L~~li~~~~~~f----~~l~~~li~~q 1007 (1052)
... | .+.+++...++.+-. +|...--.+-+.|..+|..+|+.. -.+... +++.
T Consensus 747 ~~~-------~--------------~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~-~~~~ 804 (852)
T 4fdd_A 747 EVA-------P--------------MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDA-VASW 804 (852)
T ss_dssp HHG-------G--------------GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH-HHTC
T ss_pred HHC-------C--------------CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-HHHC
T ss_conf 767-------5--------------58999999999865366607999999999999986918688889999999-8706
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 91368899999999883431
Q 001563 1008 PVDQHQRLSVCFDKLMADVA 1027 (1052)
Q Consensus 1008 ~~~~~~~l~~af~~L~~~i~ 1027 (1052)
. ...+.+.+.|.++..+..
T Consensus 805 ~-~~~~~l~~~~~~~l~~~~ 823 (852)
T 4fdd_A 805 I-NPKDDLRDMFCKILHGFK 823 (852)
T ss_dssp S-SCCHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHH
T ss_conf 8-997899999999999998
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=126.59 Aligned_cols=617 Identities=11% Similarity=0.095 Sum_probs=315.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH--C------C
Q ss_conf 90489999999998259999999999999863115942199999998308-9815899999999999861--3------7
Q 001563 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE--H------S 71 (1052)
Q Consensus 1 ~~~i~~le~~~~~~y~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~--~------~ 71 (1052)
|++++++.++.....+| +++.| ||+.|.+++.+|+.|..+..|+.+. .+..++++|+..|++.|.+ . .
T Consensus 1 M~d~~~l~~~L~~~~sp-d~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 1 MSDLETVAKFLAESVIA-STAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp CCHHHHHHHHHHHTTSG-GGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCCHHHHHHHHHHHCCC-CHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 97599999999976599-87899--9999998555998899999998657988889999999999999854887656788
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89788999999999999831998226899999999999985126898243247999999983037404888999999999
Q 001563 72 LALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLV 151 (1052)
Q Consensus 72 l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv 151 (1052)
+++++|..||+.+++.+..- ++.|+++++.+++.|.+.+|++.|| +++.++.+.+++++..+...++.++..++
T Consensus 78 l~~~~k~~ik~~ll~~l~~~----~~~ir~~l~~~ia~ia~~d~p~~Wp--~ll~~L~~~l~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 78 LPANNVELIKKEIVPLMISL----PNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99899999999999999808----7999999999999999861713015--79999999847898899999999999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 7315999996458868666311101--03889999999997544545889999999998672453376678777866556
Q 001563 152 SEMNQPNPGLPSTHHRRVACSFRDQ--SLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFG 229 (1052)
Q Consensus 152 ~E~~~~~~~~~~~~hrk~~~~f~~~--~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~ 229 (1052)
.++...- .+-+.....+..++.. .+..+|......++....+
T Consensus 152 ~~~~~~~--~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~---------------------------------- 195 (960)
T 1wa5_C 152 KRWRPLF--RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENN---------------------------------- 195 (960)
T ss_dssp GGGTTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------------------------------------
T ss_pred HHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------
T ss_conf 9988761--4847789999999998999999999999998735798----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--
Q ss_conf 555788740002696179999999731498435999999999730024688992889999999999899985037678--
Q 001563 230 TVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGL-- 307 (1052)
Q Consensus 230 ~~~~P~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l-- 307 (1052)
+.-....+. ....+++++..+.... .+ +.-...+...+..+..++......
T Consensus 196 --------------~~~~~~~~~--------~~~~~~k~~~~l~~~~---~~--~~~~~~~~~~~~~~~~~l~~~~p~~~ 248 (960)
T 1wa5_C 196 --------------KASLNILFD--------VLLVLIKLYYDFNCQD---IP--EFFEDNIQVGMGIFHKYLSYSNPLLE 248 (960)
T ss_dssp --------------CHHHHHHHH--------HHHHHHHHHHHHHSSC---CC--HHHHHTHHHHHHHHHHHHSCCSCCCC
T ss_pred --------------HHHHHHHHH--------HHHHHHHHHHHHHHCC---CH--HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf --------------799999999--------9999999999986256---55--99999899999999999768998555
Q ss_pred CC---C------HHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHC
Q ss_conf 99---4------13889999974443113413554000859999999999998622110--25-6608999998998412
Q 001563 308 AD---H------DNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQ--WA-SSSVYYLLGLWSRLVT 375 (1052)
Q Consensus 308 ~~---~------e~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~--~~-~~s~~~lL~~W~~l~~ 375 (1052)
.+ . ..-...|+.+.++...|+ . .|..++..+..++...+..+. +. ++.....+++|..++.
T Consensus 249 ~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~-~------~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~ 321 (960)
T 1wa5_C 249 DPDETEHASVLIKVKSSIQELVQLYTTRYE-D------VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR 321 (960)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHCH-H------HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 785533132799999999999999999989-9------999999999999999998437776728999999999999968
Q ss_pred CCCCCCCCCCCHHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---------CCCH-HHHHHHHHHHHHHHCCCHHH
Q ss_conf 65766789964255--427999999986000101125688889999---------7769-87999982023211034122
Q 001563 376 SVPYLKGDAPSLLD--EFVPKITEGFITSRFNSVQAGFPDDLSDNP---------LDNV-ELLQDQLDCFPYLCRFQYEN 443 (1052)
Q Consensus 376 ~~~~~~~~~~~~l~--~~~~~I~~~yi~~~l~~~~~~~~~e~~e~~---------~~d~-~~~~~~le~i~~l~r~~~~~ 443 (1052)
...+. ..+. .+..++.+..+...|...+... +..++++ .+|. .....-...+..+++...+.
T Consensus 322 ~~~~~-----~~~~~~~~l~~li~~~i~~~m~~~~~d~-e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~ 395 (960)
T 1wa5_C 322 IPKYF-----EIFNNESAMNNITEQIILPNVTLREEDV-ELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL 395 (960)
T ss_dssp SHHHH-----GGGCSHHHHHHHHHHTHHHHHSCCGGGT-TTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH
T ss_pred CHHHH-----HHHCCCHHHHHHHHHHHHHHCCCCHHHH-HHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 67689-----9876851899999999687348888789-98844999999863575512371889999999999970132
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCC-C-CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999999599999999998511789962246777779999999999830-44346-7-8864200000468999999864
Q 001563 444 SGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVK-IKQCT-G-CSLESQEVLDAELSARVLQLIN 520 (1052)
Q Consensus 444 t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~-~~~~~-~-~~~~~~~~~d~~L~~~v~~l~~ 520 (1052)
..+.+.+.+.+.++.|.. .+..+| . .-.-.++..|++.. +.... + ........+...+...|+..+.
T Consensus 396 v~~~~l~~i~~~l~~~~~---~~~~~w------~-~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~ 465 (960)
T 1wa5_C 396 VTNIFLAHMKGFVDQYMS---DPSKNW------K-FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT 465 (960)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CH------H-HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC---CCCHHH------H-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 789999999999987366---961217------9-999999999999987412567741234435699999997378744
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 13655543111356078999999999987466750565442238889999987099876889999999997301687880
Q 001563 521 VTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTES 600 (1052)
Q Consensus 521 ~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~~~~~~l~~~l~ki~~~l~~~~~~ 600 (1052)
+.. ...|++-.+.+|++.+|+... + .+. ...++. .+..++. ..+
T Consensus 466 --~~~--------~~~p~vr~~a~~~lg~~~~~~--~------~~~------------l~~~l~----~l~~~L~--d~~ 509 (960)
T 1wa5_C 466 --SNN--------IPHIILRVDAIKYIYTFRNQL--T------KAQ------------LIELMP----ILATFLQ--TDE 509 (960)
T ss_dssp --CSS--------CSCHHHHHHHHHHHHHTGGGS--C------HHH------------HHHHHH----HHHHHTT--CSC
T ss_pred --CCC--------CCCCEEHHHHHHHHHHHHHHC--C------HHH------------HHHHHH----HHHHHHC--CCC
T ss_conf --998--------888330398999999988658--9------999------------999999----9999848--997
Q ss_pred HHHHHHHHHHHHHHHCCCC--------HHHHHHCCHHHHHHHHHCCCCCCCCCCC----CCCCCHHHHHHHHHHHHH--H
Q ss_conf 5589999999999840420--------0237725547999998210189997532----235313679999999998--2
Q 001563 601 QEVIDHTLSLFLELASGYM--------TGKLLLKLDTIKFIVANHTREHFPFLEE----YRCSRSRTTFYYTIGWLI--F 666 (1052)
Q Consensus 601 ~~ii~~al~Ll~~l~~~~~--------~~~~l~~~~~~~~l~~~~~~~~~~~l~~----~~~~~~r~~~~~~l~~~~--~ 666 (1052)
..|...|..-|..++.... ..+..+ .|.+..+++.... .++. |...+.....+++++.++ +
T Consensus 510 ~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l-~p~l~~ll~~L~~----ll~~~~~~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 510 YVVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKNLIA----LILKHGSSPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT-TTTHHHHHHHHHH----HHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHH----HHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 219999999999998443644466544359875-6469999999999----99714678776432279999999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 36793899995688999999740699755660899999999999985587620463148989998811104799997530
Q 001563 667 MEESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISH 746 (1052)
Q Consensus 667 ~~~~~~~~~~~l~pl~~~~~~i~~~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l~~~ 746 (1052)
.+.-..|+..+|.++...+..+..++ .+... ...+++++..++++.. ...+..+.+.+.|. +..+++.
T Consensus 585 ~~~~~p~~~~l~~~L~~~l~~~~~~~----~~~~~---~~~~~e~l~~l~~~~~-~~~~~~~~~~~~p~----~~~iL~~ 652 (960)
T 1wa5_C 585 EDSIQPLFPQLLAQFIEIVTIMAKNP----SNPRF---THYTFESIGAILNYTQ-RQNLPLLVDSMMPT----FLTVFSE 652 (960)
T ss_dssp TTTTGGGHHHHHHHHHHHHHHHTTSC----CCHHH---HHHHHHHHHHHHHTSC-GGGHHHHHHHHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC----CCCHH---HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHH----HHHHHHH
T ss_conf 88612479999999999999997398----97278---8999999999996389-53699999999999----9999986
Q ss_pred CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 059971378999999999641
Q 001563 747 WTDTPEVTTPLLKFMAEFVLN 767 (1052)
Q Consensus 747 y~~~~~v~~~iLkl~~~~~~n 767 (1052)
+..++...++.++..+...
T Consensus 653 --~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 653 --DIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp --TCTTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHH
T ss_conf --0576699999999999973
Done!