BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001564
(1052 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial
Phytochrome Cph1 In The Pr-State
Length = 520
Score = 239 bits (609), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 157/528 (29%), Positives = 255/528 (48%), Gaps = 54/528 (10%)
Query: 74 IQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIF 133
I LIQP G ++ L E + S N +L G P +G + +F
Sbjct: 20 IHTAHLIQPHGLVVVLQEPDLTISQISANCTGIL----------GRSPEDLLGRTLGEVF 69
Query: 134 TAPSASALQKALGFGEVSLLNPILVHCKTSGKPFY---AIVHRVT-GSLIIDFEPVKPYE 189
+ +Q L G++S LNP + + G F + HR + G L+ + EP +
Sbjct: 70 DSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSD 129
Query: 190 -VPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDD 248
+P L Y +A A+ RL+ ++ D +++EV +TG+DRVM Y+F E++
Sbjct: 130 NLPF-----LGFYHMANAALNRLRQ--QANLRDFYDVIVEEVRRMTGFDRVMLYRFDENN 182
Query: 249 HGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHV----KVLQDE 304
HG+V++E + +EPYLGLHYP +DIPQ AR LF+ N +R+I D V V
Sbjct: 183 HGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPST 242
Query: 305 KLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGL 364
DLT S LR+ + CHL Y++NM ASL ++++ K LWGL
Sbjct: 243 NRAVDLT--ESILRSAYHCHLTYLKNMGVGASLTISLI--------------KDGHLWGL 286
Query: 365 VVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDA 424
+ CH+ TP+ +PF LR ACEF +V +++ + + E + + +L D + A
Sbjct: 287 IACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAA 346
Query: 425 PL--GIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLS 482
G+ ++ L GAA+ + K+ +G TP++ + ++ WL + +
Sbjct: 347 DFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFT 406
Query: 483 ADSXXXXXXXXXXXXXXVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE--KDD 540
S V G+ A+ I+ + + WFR + V WGG + E ++D
Sbjct: 407 --SSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQED 464
Query: 541 GR-KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQ-----LILRNA 582
G+ ++HPR SF + E+V+ +SLPW+ E+ + +L+ LILR A
Sbjct: 465 GKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILRQA 512
>pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial
Phytochrome Cph1
Length = 520
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/528 (29%), Positives = 255/528 (48%), Gaps = 54/528 (10%)
Query: 74 IQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIF 133
I LIQP G ++ L E + S N +L G P +G + +F
Sbjct: 20 IHTAHLIQPHGLVVVLQEPDLTISQISANCTGIL----------GRSPEDLLGRTLGEVF 69
Query: 134 TAPSASALQKALGFGEVSLLNPILVHCKTSGKPFY---AIVHRVT-GSLIIDFEPVKPYE 189
+ +Q L G++S LNP + + G F + HR + G L+ + EP +
Sbjct: 70 DSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSD 129
Query: 190 -VPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDD 248
+P L Y +A A+ RL+ ++ D +++EV +TG+DRVM Y+F E++
Sbjct: 130 NLPF-----LGFYHMANAALNRLRQ--QANLRDFYDVIVEEVRRMTGFDRVMLYRFDENN 182
Query: 249 HGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHV----KVLQDE 304
HG+V++E + +EPYLGLHYP +DIPQ AR LF+ N +R+I D V V
Sbjct: 183 HGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPST 242
Query: 305 KLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGL 364
DLT S LR+ + CHL +++NM ASL ++++ K LWGL
Sbjct: 243 NRAVDLT--ESILRSAYHCHLTFLKNMGVGASLTISLI--------------KDGHLWGL 286
Query: 365 VVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDA 424
+ CH+ TP+ +PF LR ACEF +V +++ + + E + + +L D + A
Sbjct: 287 IACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAA 346
Query: 425 PL--GIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLS 482
G+ ++ L GAA+ + K+ +G TP++ + ++ WL + +
Sbjct: 347 DFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFT 406
Query: 483 ADSXXXXXXXXXXXXXXVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE--KDD 540
S V G+ A+ I+ + + WFR + V WGG + E ++D
Sbjct: 407 --SSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQED 464
Query: 541 GR-KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQ-----LILRNA 582
G+ ++HPR SF + E+V+ +SLPW+ E+ + +L+ LILR A
Sbjct: 465 GKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILRQA 512
>pdb|4GW9|A Chain A, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
pdb|4GW9|B Chain B, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
pdb|4GW9|C Chain C, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
pdb|4GW9|D Chain D, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
Length = 655
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 186/677 (27%), Positives = 289/677 (42%), Gaps = 94/677 (13%)
Query: 80 IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSD--IKTI-FTAP 136
IQP G LL + E ++I S NA E L + SV P+ I D IK + P
Sbjct: 51 IQPHGALLVVSEPDHRIIQASANAAEFLNLG-----SVLGVPLAEIDGDLLIKILPHLDP 105
Query: 137 SASALQKALGFGEVSLLNPILVHCKTSGKP---FYAIVHRVT-GSLIIDFEPVKPYEVPM 192
+A P+ V C+ G P + + HR G LII+ E P P+
Sbjct: 106 TAEG-------------XPVAVRCRI-GNPSTEYDGLXHRPPEGGLIIELERAGP---PI 148
Query: 193 TAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEV 252
+G L A A+ R+++ +GS+ LCD + TGYDRV Y+F E HGEV
Sbjct: 149 DLSGTL------APALERIRT--AGSLRALCDDTALLFQQCTGYDRVXVYRFDEQGHGEV 200
Query: 253 VSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPF---D 309
SE GLE Y G YP++DIPQ AR L+ + +VR++VD + V L+ P D
Sbjct: 201 FSERHVPGLESYFGNRYPSSDIPQXARRLYERQRVRVLVDVSYQPVP-LEPRLSPLTGRD 259
Query: 310 LTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHN 369
L G LR+ HLQY++N A+LV+++VV +LWGLV CH+
Sbjct: 260 LDXSGCFLRSXSPIHLQYLKNXGVRATLVVSLVVG--------------GKLWGLVACHH 305
Query: 370 TTPRFVPFPLRYACEFLAQVFAIHVN-------KELELEYQILEKNILRTQTLLCDMLMR 422
PRF+ F LR CE LA+ A + + EL Q LE+ + T D
Sbjct: 306 YLPRFIHFELRAICELLAEAIATRITALESFAQSQSELFVQRLEQRXIEAITREGDWRA- 364
Query: 423 DAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLS 482
I S +I+ + DG AL+Y+++I +G P+ + +I WL ++
Sbjct: 365 ----AIFDTSQSILQPLHADGCALVYEDQIRTIGDVPSTQDVREIAGWLDR--QPRAAVT 418
Query: 483 ADSXXXXXXXXXXXXXXVVCGMAAVRISPK--DMIFWFRSQTASEVRWGGAKHEP-DEKD 539
+ + G+ A IS + + WFR + V WGG +P D
Sbjct: 419 STASLGLDVPELAHLTRXASGVVAAPISDHRGEFLXWFRPERVHTVTWGGDPKKPFTXGD 478
Query: 540 DGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSK 599
+ PR SF + +VV+ S PW ++ A R + V + L +++ +
Sbjct: 479 TPADLSPRRSFAKWHQVVEGTSDPWTAADLAAA-------RTIGQTVADIVLQFRAVRTL 531
Query: 600 LCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGK 659
+ ++ E +S+ + + P+L D +G + N + A+
Sbjct: 532 IA------REQYEQFSSQ----VHASXQPVLITDAEGRILLXNDSFRDXLPAGSPSAVHL 581
Query: 660 HFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHD 719
L S D ++ + L G + + E+ G+ + P+ L V A D
Sbjct: 582 DDLAGFFVESNDFLRNVAELIDHG---RGWRGEVLLRGA--GNRPLPLAVRADPVTRTED 636
Query: 720 NVVGVCFVAQDITPQKT 736
+G + D T ++T
Sbjct: 637 QSLGFVLIFSDATDRRT 653
>pdb|3G6O|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
pdb|3G6O|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
Length = 505
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 147/527 (27%), Positives = 233/527 (44%), Gaps = 87/527 (16%)
Query: 80 IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
IQP G L+ L V+A SEN LL V +P +
Sbjct: 23 IQPHGALVTLRADGM-VLAASENIQALLGFV-----------------------ASPGSY 58
Query: 140 ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIID-----FEPVKPYEVPMTA 194
Q+ +G + +L L T P+ V G + D ++ V E +
Sbjct: 59 LTQEQVGPEVLRMLEEGL----TGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRT 114
Query: 195 AGALQ--SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEV 252
A L S+ L A+ I L + + L + E+ +TGYDRVMAY+F DD GEV
Sbjct: 115 ADTLSITSFTLNAQRIIAQVQLHNDTAS-LLSNVTDELRRMTGYDRVMAYRFRHDDSGEV 173
Query: 253 VSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVL----QDEKLPF 308
V+E + LE YLGL YPA+DIP AR L+++N +R+I D ++V + F
Sbjct: 174 VAESRREDLESYLGLRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESF 233
Query: 309 DLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCH 368
DL+ S LR+ H +Y+ NM AS+ +++VV +LWGL CH
Sbjct: 234 DLSY--SVLRSVSPIHCEYLTNMGVRASMSISIVVG--------------GKLWGLFSCH 277
Query: 369 NTTPRFVPFPLRYACEFLAQVFAIHVNK-ELELEYQILEKNILRTQTLLCDMLMRDAPLG 427
+ +P+ +P+P+R + + +QV + V + E ++L + R L D G
Sbjct: 278 HMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFG 337
Query: 428 IVTQSPN-IMDLVKCDGAALLYKNKIWRLGVTPNDF--QLHDIVSWLSE------YHMDS 478
+ + I L+ CDGA ++ + + DF Q +++ L YH D+
Sbjct: 338 ALAHPDDGIAALIPCDGALVMLGGRTLSIR---GDFERQAGNVLQRLQRDPERDIYHTDN 394
Query: 479 TGLSADSXXXXXXXXXXXXXXVVCGMAAVRISPKD--MIFWFRSQTASEVRWGGAKHEPD 536
++ CG+ A+R ++ IFWFR + +RWGG +P+
Sbjct: 395 WPQPSEDSPDGGD---------CCGVLAIRFHRQESGWIFWFRHEEVHRIRWGG---KPE 442
Query: 537 E----KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLIL 579
+ G ++ PR SF+A+ EVV+ S PW + ++ L+L L
Sbjct: 443 KLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDL 489
>pdb|3C2W|A Chain A, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|B Chain B, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|C Chain C, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|D Chain D, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|E Chain E, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|F Chain F, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|G Chain G, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|H Chain H, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3NHQ|A Chain A, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|B Chain B, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|C Chain C, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|D Chain D, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|E Chain E, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|F Chain F, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|G Chain G, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|H Chain H, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NOP|C Chain C, Light-Induced Intermediate Structure L1 Of Pseudomonas
Aeruginosa Bacteriophytochrome
pdb|3NOT|C Chain C, Light-Induced Intermediate Structure L2 Of P. Aeruginosa
Bacteriophytochrome
pdb|3NOU|C Chain C, Light-Induced Intermediate Structure L3 Of P. Aeruginosa
Bacteriophytochrome
Length = 505
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 146/527 (27%), Positives = 232/527 (44%), Gaps = 87/527 (16%)
Query: 80 IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
IQP G L+ L V+A SEN LL V +P +
Sbjct: 23 IQPHGALVTLRADGM-VLAASENIQALLGFV-----------------------ASPGSY 58
Query: 140 ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIID-----FEPVKPYEVPMTA 194
Q+ +G + +L L T P+ V G + D ++ V E +
Sbjct: 59 LTQEQVGPEVLRMLEEGL----TGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRT 114
Query: 195 AGALQ--SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEV 252
A L S+ L A+ I L + + L + E+ +TGYDRVMAY+F DD GEV
Sbjct: 115 ADTLSITSFTLNAQRIIAQVQLHNDTAS-LLSNVTDELRRMTGYDRVMAYRFRHDDSGEV 173
Query: 253 VSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVL----QDEKLPF 308
V+E + LE YLG YPA+DIP AR L+++N +R+I D ++V + F
Sbjct: 174 VAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESF 233
Query: 309 DLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCH 368
DL+ S LR+ H +Y+ NM AS+ +++VV +LWGL CH
Sbjct: 234 DLSY--SVLRSVSPIHCEYLTNMGVRASMSISIVVG--------------GKLWGLFSCH 277
Query: 369 NTTPRFVPFPLRYACEFLAQVFAIHVNK-ELELEYQILEKNILRTQTLLCDMLMRDAPLG 427
+ +P+ +P+P+R + + +QV + V + E ++L + R L D G
Sbjct: 278 HMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFG 337
Query: 428 IVTQSPN-IMDLVKCDGAALLYKNKIWRLGVTPNDF--QLHDIVSWLSE------YHMDS 478
+ + I L+ CDGA ++ + + DF Q +++ L YH D+
Sbjct: 338 ALAHPDDGIAALIPCDGALVMLGGRTLSIR---GDFERQAGNVLQRLQRDPERDIYHTDN 394
Query: 479 TGLSADSXXXXXXXXXXXXXXVVCGMAAVRISPKD--MIFWFRSQTASEVRWGGAKHEPD 536
++ CG+ A+R ++ IFWFR + +RWGG +P+
Sbjct: 395 WPQPSEDSPDGGD---------CCGVLAIRFHRQESGWIFWFRHEEVHRIRWGG---KPE 442
Query: 537 E----KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLIL 579
+ G ++ PR SF+A+ EVV+ S PW + ++ L+L L
Sbjct: 443 KLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDL 489
>pdb|3IBR|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
pdb|3IBR|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
Length = 505
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 191/412 (46%), Gaps = 52/412 (12%)
Query: 188 YEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHED 247
+E+ ++ S+ L A+ I L + + L + E+ TGYDRV AY+F D
Sbjct: 110 FEIRTADTLSITSFTLNAQRIIAQVQLHNDTAS-LLSNVTDELRRXTGYDRVXAYRFRHD 168
Query: 248 DHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVL----QD 303
D GEVV+E + LE YLGL YPA+DIP AR L+++N +R+I D +V +
Sbjct: 169 DSGEVVAESRREDLESYLGLRYPASDIPAQARRLYIQNPIRLIADVAYTPXRVFPALNPE 228
Query: 304 EKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWG 363
FDL+ S LR+ H +Y+ N AS +++VV +LWG
Sbjct: 229 TNESFDLSY--SVLRSVSPIHCEYLTNXGVRASXSISIVVG--------------GKLWG 272
Query: 364 LVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNK-ELELEYQILEKNILRTQTLLCDMLMR 422
L CH+ +P+ +P+P+R + + +QV + V + E ++L + R L
Sbjct: 273 LFSCHHXSPKLIPYPVRXSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDA 332
Query: 423 DAPLGIVTQSPN-IMDLVKCDGAALLYKNKIWRLGVTPNDF--QLHDIVSWLSE------ 473
D G + + I L+ CDGA + + + DF Q +++ L
Sbjct: 333 DDLFGALAHPDDGIAALIPCDGALVXLGGRTLSIR---GDFERQAGNVLQRLQRDPERDI 389
Query: 474 YHMDSTGLSADSXXXXXXXXXXXXXXVVCGMAAVRISPKD--MIFWFRSQTASEVRWGGA 531
YH D+ ++ CG+ A+R ++ IFWFR + +RWGG
Sbjct: 390 YHTDNWPQPSEDSPDGGD---------CCGVLAIRFHRQESGWIFWFRHEEVHRIRWGG- 439
Query: 532 KHEPDE----KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLIL 579
+P++ G ++ PR SF+A+ EVV+ S PW + ++ L+L L
Sbjct: 440 --KPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDL 489
>pdb|4E04|A Chain A, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis.
pdb|4E04|B Chain B, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis
Length = 327
Score = 148 bits (373), Expect = 2e-35, Method: Composition-based stats.
Identities = 110/331 (33%), Positives = 162/331 (48%), Gaps = 44/331 (13%)
Query: 80 IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
IQP G LLAL ++A S+N PEL + A+ IG +F + + +
Sbjct: 26 IQPHGLLLAL-AADMTIVAGSDNLPELTGLAIGAL----------IGRSAADVFDSETHN 74
Query: 140 ALQKALGFGEVSLLNPILV--HCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 197
L AL ++ PI V + F HR + ++ EP P
Sbjct: 75 RLTIALAEPGAAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEP------PQRDVRY 128
Query: 198 LQSY-KLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEI 256
Q++ + AI RLQ+ + ++E C QEV E+TG+DRVM Y+F D GEV++E
Sbjct: 129 PQAFFRSVRSAIRRLQA--AETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAED 186
Query: 257 TKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQD----EKLPFDLTL 312
+ +E YLGLH+PA+DIP AR L+ N VR+I D R V V D P DL+
Sbjct: 187 RCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSF 246
Query: 313 CGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHNTTP 372
+ LR+ HL+YM N+ ++ ++++ + +RLWGL+ CH+ P
Sbjct: 247 --AILRSVSPVHLEYMRNIGMHGTMSISIL--------------RGERLWGLIACHHRKP 290
Query: 373 RFVPFPLRYACEFLAQVFA--IHVNKELELE 401
+V +R ACE +AQV A I V +E LE
Sbjct: 291 NYVDLEVRQACELVAQVLAWQIGVMEEQALE 321
>pdb|2OOL|A Chain A, Crystal Structure Of The Chromophore-Binding Domain Of An
Unusual Bacteriophytochrome Rpbphp3 From R. Palustris
pdb|2OOL|B Chain B, Crystal Structure Of The Chromophore-Binding Domain Of An
Unusual Bacteriophytochrome Rpbphp3 From R. Palustris
Length = 337
Score = 146 bits (368), Expect = 7e-35, Method: Composition-based stats.
Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 42/329 (12%)
Query: 80 IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
IQP G L + E ++ + S N +LL P + I TA SA+
Sbjct: 39 IQPHGYLFVVSETDLRIASVSANVEDLLR----------QPPASLLNVPIAHYLTAASAA 88
Query: 140 ALQKALGFGEVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 197
L AL G+ + +NPI + T + F I+HR +I++ EP E T
Sbjct: 89 RLTHALHGGDPAAINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRD--ESRYTN--- 143
Query: 198 LQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEIT 257
+ ++ AI RLQ+ + + C EV +TG+DR+ Y+F D G+V++E
Sbjct: 144 -EFFRSVRVAIRRLQT--AADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDR 200
Query: 258 KSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQD--EKL--PFDLTLC 313
SG+ L H+P++DIP +R L+ N VR+I D R ++ D +L P DL+
Sbjct: 201 DSGIPSLLDFHFPSSDIPAQSRALYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSF- 259
Query: 314 GSTLRAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHNTTPR 373
S LR+ HL+YM NM A++ +++V + RLWG++ CHN TPR
Sbjct: 260 -SVLRSVSPTHLEYMVNMGMHAAMSISIV--------------RDNRLWGMISCHNLTPR 304
Query: 374 FVPFPLRYACEFLAQVFA--IHVNKELEL 400
FV + +R ACE +AQV I V +E E+
Sbjct: 305 FVSYEVRQACELIAQVLTWQIGVLEEAEI 333
>pdb|2O9B|A Chain A, Crystal Structure Of Bacteriophytochrome Chromophore
Binding Domain
pdb|2O9C|A Chain A, Crystal Structure Of Bacteriophytochrome Chromophore
Binding Domain At 1.45 Angstrom Resolution
Length = 342
Score = 127 bits (318), Expect = 5e-29, Method: Composition-based stats.
Identities = 101/317 (31%), Positives = 150/317 (47%), Gaps = 37/317 (11%)
Query: 80 IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
IQP G LL D + +V+ S NA L G P + G + +
Sbjct: 50 IQPHGALLTADGHSGEVLQMSLNAATFL----------GQEPTVLRGQTLAALL-PEQWP 98
Query: 140 ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199
ALQ AL G L + VHRV LI++FEP + ++ T AL+
Sbjct: 99 ALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWD--STGPHALR 156
Query: 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS 259
+ A+ L+S P+ + L + Q V ELTG+DRVM YKF D GEV++E +
Sbjct: 157 N------AMFALESAPN--LRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARRE 208
Query: 260 GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV--LQDEKLPFDLTLCGSTL 317
GL +LG +PA+DIP AR L+ ++ +R+ D RA V + + + + L G+ L
Sbjct: 209 GLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVL 268
Query: 318 RAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHNTTPRFVPF 377
RA H+QY+ NM +SL ++V +LWGL+ CH+ TP +P
Sbjct: 269 RATSPMHMQYLRNMGVGSSLSVSV--------------VVGGQLWGLIACHHQTPYVLPP 314
Query: 378 PLRYACEFLAQVFAIHV 394
LR E L ++ ++ V
Sbjct: 315 DLRTTLESLGRLLSLQV 331
>pdb|3S7N|A Chain A, Crystal Structure Of The Alternate His 207 Conformation Of
The Infrared Fluorescent D207h Variant Of Deinococcus
Bacteriophytochrome Chromophore Binding Domain At 2.45
Angstrom Resolution
pdb|3S7O|A Chain A, Crystal Structure Of The Infrared Fluorescent D207h
Variant Of Deinococcus Bacteriophytochrome Chromophore
Binding Domain At 1.24 Angstrom Resolution
pdb|3S7P|A Chain A, Crystal Structure Of The Infrared Fluorescent D207h
Variant Of Deinococcus Bacteriophytochrome Chromophore
Binding Domain At 1.72 Angstrom Resolution
Length = 343
Score = 125 bits (314), Expect = 1e-28, Method: Composition-based stats.
Identities = 102/324 (31%), Positives = 152/324 (46%), Gaps = 37/324 (11%)
Query: 80 IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
IQP G LL D + +V+ S NA L G P + G + +
Sbjct: 49 IQPHGALLTADGHSGEVLQMSLNAATFL----------GQEPTVLRGQTLAALL-PEQWP 97
Query: 140 ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199
ALQ AL G L + VHRV LI++FEP + ++ T AL+
Sbjct: 98 ALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWD--STGPHALR 155
Query: 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS 259
+ A+ L+S P+ + L + Q V ELTG+DRVM YKF D GEV++E +
Sbjct: 156 N------AMFALESAPN--LRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARRE 207
Query: 260 GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV--LQDEKLPFDLTLCGSTL 317
GL +LG +PA+ IP AR L+ ++ +R+ D RA V + + + + L G+ L
Sbjct: 208 GLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVL 267
Query: 318 RAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHNTTPRFVPF 377
RA H+QY+ NM +SL ++V +LWGL+ CH+ TP +P
Sbjct: 268 RATSPMHMQYLRNMGVGSSLSVSV--------------VVGGQLWGLIACHHQTPYVLPP 313
Query: 378 PLRYACEFLAQVFAIHVNKELELE 401
LR E L ++ ++ V + LE
Sbjct: 314 DLRTTLESLGRLLSLQVQVKEALE 337
>pdb|3S7Q|A Chain A, Crystal Structure Of A Monomeric Infrared Fluorescent
Deinococcus Radiodurans Bacteriophytochrome Chromophore
Binding Domain
Length = 343
Score = 124 bits (311), Expect = 3e-28, Method: Composition-based stats.
Identities = 100/324 (30%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 80 IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
IQP G LL D + +V+ S NA L G P + G + +
Sbjct: 49 IQPHGALLTADGHSGEVLQMSLNAATFL----------GQEPTVLRGQTLAALL-PEQWP 97
Query: 140 ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199
ALQ AL G L + VHRV LI++FEP + ++ T AL+
Sbjct: 98 ALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWD--STGPHALR 155
Query: 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS 259
+ A++ L+S P+ + L + Q V ELTG+DRVM YKF D GEV++E +
Sbjct: 156 N------AMSALESAPN--LRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARRE 207
Query: 260 GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV--LQDEKLPFDLTLCGSTL 317
GL +LG +PA+ IP AR L+ ++ +R+ D RA V + + + + L G+ L
Sbjct: 208 GLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVL 267
Query: 318 RAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHNTTPRFVPF 377
RA H+Q++ NM +SL ++ +LWGL+ CH+ TP +P
Sbjct: 268 RATSPMHMQFLRNMGVGSSLSVS--------------VVVGGQLWGLIACHHQTPYVLPP 313
Query: 378 PLRYACEFLAQVFAIHVNKELELE 401
LR E+L + + V + LE
Sbjct: 314 DLRTTLEYLGRELSEQVQVKEALE 337
>pdb|1ZTU|A Chain A, Structure Of The Chromophore Binding Domain Of Bacterial
Phytochrome
Length = 341
Score = 122 bits (307), Expect = 7e-28, Method: Composition-based stats.
Identities = 98/317 (30%), Positives = 146/317 (46%), Gaps = 37/317 (11%)
Query: 80 IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
IQP G LL D + +V+ S NA L G P + G + +
Sbjct: 49 IQPHGALLTADGHSGEVLQMSLNAATFL----------GQEPTVLRGQTLAALL-PEQWP 97
Query: 140 ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199
ALQ AL G L + VHRV LI++FEP + ++ T AL+
Sbjct: 98 ALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWD--STGPHALR 155
Query: 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS 259
+ A L+S P+ + L + Q V ELTG+DRV YKF D GEV++E +
Sbjct: 156 NAXFA------LESAPN--LRALAEVATQTVRELTGFDRVXLYKFAPDATGEVIAEARRE 207
Query: 260 GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV--LQDEKLPFDLTLCGSTL 317
GL +LG +PA+DIP AR L+ ++ +R+ D RA V + + + + L G+ L
Sbjct: 208 GLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNTQTNAPTPLGGAVL 267
Query: 318 RAPHSCHLQYMENMNSIASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHNTTPRFVPF 377
RA H QY+ N +SL ++ +LWGL+ CH+ TP +P
Sbjct: 268 RATSPXHXQYLRNXGVGSSLSVS--------------VVVGGQLWGLIACHHQTPYVLPP 313
Query: 378 PLRYACEFLAQVFAIHV 394
LR E+L ++ ++ V
Sbjct: 314 DLRTTLEYLGRLLSLQV 330
>pdb|2LB5|A Chain A, Refined Structural Basis For The Photoconversion Of A
Phytochrome To The Activated Far-Red Light-Absorbing
Form
pdb|2LB9|A Chain A, Refined Solution Structure Of A Cyanobacterial Phytochrome
Gaf Domain In The Red Light-Absorbing Ground State
(Corrected Pyrrole Ring Planarity)
Length = 208
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 19/159 (11%)
Query: 219 MERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSG--LEPYLGLHYPATDIPQ 276
++++ ++EV G DRV Y+F + HG VV+E + G L LGL +PA DIP+
Sbjct: 31 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAE-ARGGERLPSLLGLTFPAGDIPE 89
Query: 277 AARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTL-CGSTLRAP-HSCHLQYMENMNSI 334
AR LF +VR+IVD A+ + Q E + G L+ P CH+ Y+++M
Sbjct: 90 EARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVA 149
Query: 335 ASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHNTTPR 373
+SLV+ ++ + LWGL+V H+ PR
Sbjct: 150 SSLVVPLM--------------HHQELWGLLVSHHAEPR 174
>pdb|2K2N|A Chain A, Solution Structure Of A Cyanobacterial Phytochrome Gaf
Domain In The Red Light-Absorbing Ground State
pdb|2KLI|A Chain A, Structural Basis For The Photoconversion Of A Phytochrome
To The Activated Far-Red Light-Absorbing Form
pdb|2KOI|A Chain A, Refined Solution Structure Of A Cyanobacterial Phytochrome
Gaf Domain In The Red Light-Absorbing Ground State
Length = 172
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 19/159 (11%)
Query: 219 MERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSG--LEPYLGLHYPATDIPQ 276
++++ ++EV G DRV Y+F + HG VV+E + G L LGL +PA DIP+
Sbjct: 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAE-ARGGERLPSLLGLTFPAGDIPE 59
Query: 277 AARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTL-CGSTLRAP-HSCHLQYMENMNSI 334
AR LF +VR+IVD A+ + Q E + G L+ P CH+ Y+++M
Sbjct: 60 EARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVA 119
Query: 335 ASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHNTTPR 373
+SLV+ ++ + LWGL+V H+ PR
Sbjct: 120 SSLVVPLM--------------HHQELWGLLVSHHAEPR 144
>pdb|3W2Z|A Chain A, Crystal Structure Of The Cyanobacterial Protein
Length = 198
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 41/193 (21%)
Query: 214 LPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATD 273
L +++++ T QE+ +L DRV Y+F+ D GE V+E SG +G D
Sbjct: 31 LRVSNIDKIFQTTTQEIRQLLKCDRVAVYRFNPDWSGEFVAESVGSGWVKLVG-----PD 85
Query: 274 IPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNS 333
I + ++ ++ R RH Q+ + D+ G SCHL+ +E
Sbjct: 86 I----KTVWEDTHLQETQGGRYRH----QESFVVNDIYEAGH-----FSCHLEILEQFEI 132
Query: 334 IASLVMAVVVNDXXXXGDNTLPQKRKRLWGLVVCHNT--TPRFVPFPLRYACEFLAQV-- 389
A +++ V + +LWGL+ + T +V + FL QV
Sbjct: 133 KAYIIVPVFAAE--------------KLWGLLAAYQNSGTREWV----EWESSFLTQVGL 174
Query: 390 -FAIHVNKELELE 401
F I ++ LE
Sbjct: 175 QFGIAISHAEYLE 187
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 871 ASHELQQAL--HVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKR 928
SH LQ AL L+E LKR + ++R PL+ II +++E + +E+ R
Sbjct: 18 GSHMLQSALADRSAALAEAERLKR-DFVGNVSYELRTPLTTIIGYSELLERADGISERGR 76
Query: 929 --LLHTSAQCQRQLHKXXXXXXXXXXXXXXXXXEMVEFTLNEVLVASISQVMMKSNAKGI 986
+ A + E+ + ++++L+ + + + + G+
Sbjct: 77 NHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGV 136
Query: 987 RIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSS 1033
+ E E + + GD RL Q L + ++ P GG++ +S+
Sbjct: 137 TLAVECEEDV--GLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSA 181
>pdb|2QKP|A Chain A, Crystal Structure Of C-Terminal Domain Of Smu_1151c From
Streptococcus Mutans
pdb|2QKP|B Chain B, Crystal Structure Of C-Terminal Domain Of Smu_1151c From
Streptococcus Mutans
pdb|2QKP|C Chain C, Crystal Structure Of C-Terminal Domain Of Smu_1151c From
Streptococcus Mutans
pdb|2QKP|D Chain D, Crystal Structure Of C-Terminal Domain Of Smu_1151c From
Streptococcus Mutans
Length = 151
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 629 ILAVDVDGLVNGWNTKI--AELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEE 686
I V+ D + +N + AE+ +G++ +D VK++ L GQ +
Sbjct: 32 ITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRD 91
Query: 687 Q-NIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIE 745
+ N+ F+ + G + V A RD + GV QDI P + +F R E
Sbjct: 92 KVNMWFQSERLGKFV-------YVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDE 144
Query: 746 G 746
G
Sbjct: 145 G 145
>pdb|3QS7|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 423
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 755 PNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACC 806
P P++ + + C E +PA+VK K E+V L E+FGT++ CC
Sbjct: 167 PEPIVEWVLCDSQGESCKEESPAVVK----KEEKV-----LHELFGTDIRCC 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,201,403
Number of Sequences: 62578
Number of extensions: 1114322
Number of successful extensions: 2387
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2316
Number of HSP's gapped (non-prelim): 24
length of query: 1052
length of database: 14,973,337
effective HSP length: 109
effective length of query: 943
effective length of database: 8,152,335
effective search space: 7687651905
effective search space used: 7687651905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)