BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001565
(1052 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 82/155 (52%), Gaps = 17/155 (10%)
Query: 908 SLKPLHWVKV-TRAMQGSLWADSQKQENHSRAPEI-DISELESLFSA---ASDGSGTNKT 962
+LK +W K+ ++G++W + + ++ +I D+ +LE FSA D + +
Sbjct: 14 ALKSFNWSKLPENKLEGTVWTEI----DDTKVFKILDLEDLERTFSAYQRQQDFFVNSNS 69
Query: 963 GVRRGSNIN-------KPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSA-LD 1014
+ I+ K +++ +++ RRA NC I+L+++K+ ++ A+L +D L
Sbjct: 70 KQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLP 129
Query: 1015 IDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQ 1049
D +E L+KF P K +++LL+ + + + K ++
Sbjct: 130 KDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADR 164
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 82/155 (52%), Gaps = 17/155 (10%)
Query: 908 SLKPLHWVKV-TRAMQGSLWADSQKQENHSRAPEI-DISELESLFSA---ASDGSGTNKT 962
+LK +W K+ ++G++W + + ++ +I D+ +LE FSA D + +
Sbjct: 16 ALKSFNWSKLPENKLEGTVWTEI----DDTKVFKILDLEDLERTFSAYQRQQDFFVNSNS 71
Query: 963 GVRRGSNIN-------KPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSA-LD 1014
+ I+ K +++ +++ RRA NC I+L+++K+ ++ A+L +D L
Sbjct: 72 KQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLP 131
Query: 1015 IDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQ 1049
D +E L+KF P K +++LL+ + + + K ++
Sbjct: 132 KDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADR 166
>pdb|3N0A|A Chain A, Crystal Structure Of Auxilin (40-400)
Length = 361
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 37/251 (14%)
Query: 103 IQHFLRVCEH---WLLLGDHQNVILLHSERGGWPXXXXXXXXXXIFRKLHSGERRTLEIV 159
+ + VC + WLL + +NV ++H G IF L+S + ++
Sbjct: 96 LHNLFAVCRNMYNWLL-QNPKNVCVVHC-LDGRAASSILVGAMFIFCNLYSTPGPAVRLL 153
Query: 160 HREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQ 219
+ + P L PS RYL Y+ + P + L++ + + +P F+ Q
Sbjct: 154 YAKRPGIGLS--------PSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQ 205
Query: 220 -NGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVV 278
NGCRP + + I++ + ++ YR D + I + VQGDVV
Sbjct: 206 RNGCRPYCDVL---------IGETKIYTTCADFERMKEYRVQDGKIF-IPLSITVQGDVV 255
Query: 279 LECVHL------DLDPE-REVMMFRVMFNTAFI--RSNILMLNSENLDILWDSKERYPKG 329
+ HL L + +F++ F+T FI + +L LD D E+YP+
Sbjct: 256 VSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDAC-DVPEKYPQL 314
Query: 330 FRAEVLFGDVE 340
F+ + DVE
Sbjct: 315 FQVTL---DVE 322
>pdb|1QWR|A Chain A, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
pdb|1QWR|B Chain B, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
Length = 319
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 337 GDVESISP-PRAPTSILNGEEKGGLPIEAFSRVRELFSGVEWVDNSDALWLLKQLSVFSD 395
G+ +IS P+ P+++ NG KG IE + RE+F GVE D LL +L D
Sbjct: 39 GECWAISAHPKGPSTVANGPYKGKTLIELWEEHREVFGGVE----GDRFPLLTKL---LD 91
Query: 396 VKEFTRMQDRGSSYTSPVDSEEE 418
VKE T ++ Y + + E E
Sbjct: 92 VKEDTSIKVHPDDYYAGENEEGE 114
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 982 RRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDK 1041
+ A N I L ++P ++ N +L ++ + L ++NLIK P E++++L +
Sbjct: 105 KTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY 164
Query: 1042 VMLGKCEQ 1049
L + EQ
Sbjct: 165 DDLAESEQ 172
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 982 RRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDK 1041
+ A N I L ++P ++ N +L ++ + L ++NLIK P E++++L +
Sbjct: 86 KTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY 145
Query: 1042 VMLGKCEQ 1049
L + EQ
Sbjct: 146 DDLAESEQ 153
>pdb|3GNZ|P Chain P, Toxin Fold For Microbial Attack And Plant Defense
Length = 213
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 187 VARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRP 224
V + P WP PE A + + +R P D NGC+P
Sbjct: 2 VINHDAVPVWPQPEPADATQALAVRFKPQLDVVNGCQP 39
>pdb|3GNU|P Chain P, Toxin Fold As Basis For Microbial Attack And Plant Defense
Length = 213
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 187 VARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRP 224
V + P WP PE A + + +R P D NGC+P
Sbjct: 2 VINHDAVPVWPQPEPADATQALAVRFKPQLDVVNGCQP 39
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 982 RRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDK 1041
+ A N I L ++P ++ N +L ++ + L ++NLIK P E++++L +
Sbjct: 15 KTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY 74
Query: 1042 VMLGKCEQ 1049
L + EQ
Sbjct: 75 DDLAESEQ 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,307,291
Number of Sequences: 62578
Number of extensions: 806871
Number of successful extensions: 1419
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1408
Number of HSP's gapped (non-prelim): 10
length of query: 1052
length of database: 14,973,337
effective HSP length: 109
effective length of query: 943
effective length of database: 8,152,335
effective search space: 7687651905
effective search space used: 7687651905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)