Query 001565
Match_columns 1052
No_of_seqs 533 out of 1773
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2283 Clathrin coat dissocia 100.0 2.5E-57 5.4E-62 520.9 24.7 307 4-343 3-321 (434)
2 PF10409 PTEN_C2: C2 domain of 99.9 1.3E-27 2.9E-32 237.0 14.8 131 198-338 1-134 (134)
3 KOG1924 RhoA GTPase effector D 99.9 2.1E-27 4.5E-32 275.4 17.9 154 895-1051 612-768 (1102)
4 smart00498 FH2 Formin Homology 99.9 5.2E-22 1.1E-26 233.1 9.1 144 902-1051 3-150 (432)
5 PF02181 FH2: Formin Homology 99.8 1.7E-21 3.8E-26 224.5 2.6 145 901-1051 3-148 (370)
6 PTZ00242 protein tyrosine phos 99.7 4E-15 8.6E-20 153.3 18.1 152 12-193 7-160 (166)
7 KOG1923 Rac1 GTPase effector F 99.6 1.6E-15 3.5E-20 178.8 13.2 151 897-1051 359-514 (830)
8 KOG1925 Rac1 GTPase effector F 99.5 9.1E-15 2E-19 164.4 8.7 134 905-1051 280-424 (817)
9 PTZ00393 protein tyrosine phos 99.5 6.2E-13 1.4E-17 142.3 15.4 145 15-192 86-230 (241)
10 KOG1720 Protein tyrosine phosp 99.4 1.3E-12 2.9E-17 135.3 14.3 154 12-190 49-207 (225)
11 KOG1922 Rho GTPase effector BN 99.4 2E-12 4.4E-17 164.1 14.6 144 903-1051 390-538 (833)
12 smart00195 DSPc Dual specifici 99.2 4E-10 8.8E-15 112.0 15.0 136 17-189 2-137 (138)
13 PF05706 CDKN3: Cyclin-depende 99.2 8.7E-11 1.9E-15 119.4 9.6 124 20-156 40-168 (168)
14 KOG1719 Dual specificity phosp 99.1 4.6E-10 1E-14 111.2 10.9 99 77-190 70-169 (183)
15 COG2453 CDC14 Predicted protei 99.0 9.6E-10 2.1E-14 115.0 11.1 98 80-191 70-167 (180)
16 PF00782 DSPc: Dual specificit 99.0 1E-09 2.2E-14 108.2 10.2 122 48-189 11-132 (133)
17 PHA03247 large tegument protei 99.0 1.8E-06 4E-11 113.4 40.7 11 920-930 3023-3033(3151)
18 cd00127 DSPc Dual specificity 99.0 7.7E-09 1.7E-13 102.4 14.0 121 16-163 2-122 (139)
19 PRK12361 hypothetical protein; 98.9 1E-08 2.3E-13 124.7 15.9 143 15-190 94-236 (547)
20 PHA03247 large tegument protei 98.8 9.7E-05 2.1E-09 98.0 43.7 9 45-53 1914-1922(3151)
21 smart00012 PTPc_DSPc Protein t 98.7 8.9E-08 1.9E-12 89.4 11.2 91 87-187 7-102 (105)
22 smart00404 PTPc_motif Protein 98.7 8.9E-08 1.9E-12 89.4 11.2 91 87-187 7-102 (105)
23 KOG1924 RhoA GTPase effector D 98.5 6.1E-07 1.3E-11 106.9 10.7 10 921-930 626-635 (1102)
24 KOG2836 Protein tyrosine phosp 98.3 2.6E-05 5.6E-10 76.2 15.0 147 10-187 6-152 (173)
25 cd00047 PTPc Protein tyrosine 98.2 5.5E-06 1.2E-10 89.6 10.0 93 84-187 131-228 (231)
26 PRK15375 pathogenicity island 98.1 1.5E-05 3.3E-10 93.5 11.6 97 83-188 423-526 (535)
27 smart00194 PTPc Protein tyrosi 98.1 2.1E-05 4.5E-10 86.7 11.3 87 89-187 165-255 (258)
28 PF00102 Y_phosphatase: Protei 97.9 2.9E-05 6.3E-10 83.3 9.3 92 84-187 136-232 (235)
29 KOG0790 Protein tyrosine phosp 97.8 3.2E-05 7E-10 88.1 6.7 117 59-188 381-517 (600)
30 PF03162 Y_phosphatase2: Tyros 97.8 0.00011 2.4E-09 76.1 9.8 123 47-189 24-148 (164)
31 KOG3671 Actin regulatory prote 97.7 0.0008 1.7E-08 78.1 16.4 9 976-984 538-546 (569)
32 KOG2386 mRNA capping enzyme, g 97.6 0.00018 3.8E-09 83.0 8.8 131 29-167 36-169 (393)
33 KOG0792 Protein tyrosine phosp 97.5 0.00028 6.1E-09 88.1 10.1 89 89-187 1035-1125(1144)
34 KOG1716 Dual specificity phosp 97.5 0.0015 3.2E-08 73.6 14.0 55 103-162 141-195 (285)
35 PHA02742 protein tyrosine phos 97.3 0.00093 2E-08 75.9 9.4 89 89-187 190-291 (303)
36 PHA02747 protein tyrosine phos 97.3 0.0013 2.7E-08 75.1 10.3 91 84-184 183-288 (312)
37 PLN02727 NAD kinase 97.2 0.00096 2.1E-08 83.4 9.7 98 39-148 263-368 (986)
38 PHA02746 protein tyrosine phos 97.2 0.0025 5.4E-08 73.0 11.4 59 84-144 201-270 (323)
39 PF14566 PTPlike_phytase: Inos 97.1 0.00054 1.2E-08 69.8 4.4 60 79-144 89-148 (149)
40 KOG3671 Actin regulatory prote 97.0 0.02 4.3E-07 67.0 17.0 8 137-144 14-21 (569)
41 KOG0791 Protein tyrosine phosp 97.0 0.0012 2.6E-08 74.8 7.0 99 79-186 249-348 (374)
42 PHA02740 protein tyrosine phos 97.0 0.003 6.5E-08 71.6 9.6 93 84-187 177-283 (298)
43 PHA02738 hypothetical protein; 97.0 0.0029 6.4E-08 72.4 9.5 94 84-187 178-289 (320)
44 TIGR01244 conserved hypothetic 96.9 0.0078 1.7E-07 60.3 11.3 115 15-159 1-121 (135)
45 KOG1718 Dual specificity phosp 95.7 0.082 1.8E-06 54.4 10.4 117 14-160 15-132 (198)
46 KOG1717 Dual specificity phosp 95.6 0.027 5.9E-07 61.4 7.0 72 84-162 219-291 (343)
47 COG5599 PTP2 Protein tyrosine 95.6 0.017 3.6E-07 63.2 5.4 42 103-146 201-243 (302)
48 PF13350 Y_phosphatase3: Tyros 95.5 0.02 4.2E-07 59.1 5.2 34 112-148 118-151 (164)
49 KOG0789 Protein tyrosine phosp 94.6 0.084 1.8E-06 62.1 8.1 55 89-147 271-325 (415)
50 KOG4228 Protein tyrosine phosp 94.6 0.036 7.9E-07 70.6 5.2 46 89-140 702-749 (1087)
51 COG2365 Protein tyrosine/serin 94.5 0.083 1.8E-06 58.5 7.0 31 122-153 138-168 (249)
52 KOG0793 Protein tyrosine phosp 94.4 0.024 5.2E-07 68.4 2.7 69 89-161 899-972 (1004)
53 KOG1572 Predicted protein tyro 94.4 0.47 1E-05 51.6 12.1 106 48-162 78-187 (249)
54 PF04273 DUF442: Putative phos 93.4 0.52 1.1E-05 45.8 9.4 93 15-134 1-99 (110)
55 PF14671 DSPn: Dual specificit 92.9 0.2 4.3E-06 50.8 5.8 67 91-160 39-108 (141)
56 KOG4228 Protein tyrosine phosp 89.7 0.55 1.2E-05 60.4 6.5 73 59-147 967-1044(1087)
57 COG5350 Predicted protein tyro 84.8 5.2 0.00011 41.1 8.8 113 14-148 7-122 (172)
58 cd08678 C2_C21orf25-like C2 do 75.6 30 0.00064 33.8 10.8 119 203-340 1-123 (126)
59 cd08682 C2_Rab11-FIP_classI C2 73.0 31 0.00068 33.6 10.2 85 206-305 4-94 (126)
60 PRK00142 putative rhodanese-re 72.7 20 0.00043 41.3 9.9 105 17-147 89-195 (314)
61 cd04042 C2A_MCTP_PRT C2 domain 72.6 50 0.0011 31.9 11.4 88 203-305 2-90 (121)
62 cd01518 RHOD_YceA Member of th 70.9 19 0.00041 33.6 7.8 80 44-147 6-85 (101)
63 cd04036 C2_cPLA2 C2 domain pre 67.1 51 0.0011 31.7 10.1 92 203-306 2-93 (119)
64 cd08685 C2_RGS-like C2 domain 66.1 48 0.001 32.3 9.8 94 201-304 12-107 (119)
65 cd08410 C2B_Synaptotagmin-17 C 64.9 30 0.00065 34.4 8.3 97 198-304 11-110 (135)
66 PRK01415 hypothetical protein; 63.6 34 0.00074 38.1 9.0 104 17-147 90-195 (247)
67 KOG4471 Phosphatidylinositol 3 63.3 8.4 0.00018 47.0 4.5 70 54-144 326-398 (717)
68 PF06602 Myotub-related: Myotu 62.5 23 0.00051 41.4 7.9 39 121-161 232-272 (353)
69 cd08375 C2_Intersectin C2 doma 62.2 63 0.0014 32.3 10.0 86 202-302 16-102 (136)
70 cd08400 C2_Ras_p21A1 C2 domain 62.2 1.2E+02 0.0026 29.7 11.9 88 201-305 4-91 (126)
71 cd04037 C2E_Ferlin C2 domain f 62.0 43 0.00093 32.8 8.6 88 203-302 2-89 (124)
72 cd04022 C2A_MCTP_PRT_plant C2 61.7 78 0.0017 30.9 10.4 89 203-305 2-94 (127)
73 cd08681 C2_fungal_Inn1p-like C 61.4 43 0.00092 32.0 8.4 86 203-302 3-88 (118)
74 PRK05320 rhodanese superfamily 61.0 29 0.00063 38.8 8.0 107 19-147 90-199 (257)
75 cd04030 C2C_KIAA1228 C2 domain 58.0 67 0.0015 31.0 9.2 94 198-300 13-110 (127)
76 cd08393 C2A_SLP-1_2 C2 domain 56.9 57 0.0012 32.0 8.5 97 199-305 13-113 (125)
77 PF00168 C2: C2 domain; Inter 56.6 1.3E+02 0.0029 26.0 10.8 82 203-296 1-83 (85)
78 cd08387 C2A_Synaptotagmin-8 C2 55.9 65 0.0014 31.2 8.7 94 200-305 15-111 (124)
79 cd08384 C2B_Rabphilin_Doc2 C2 53.8 45 0.00098 32.7 7.3 94 199-302 11-107 (133)
80 cd08386 C2A_Synaptotagmin-7 C2 53.6 27 0.0006 33.7 5.7 34 198-231 13-46 (125)
81 cd08376 C2B_MCTP_PRT C2 domain 53.5 1.2E+02 0.0027 28.7 10.1 88 203-305 2-90 (116)
82 cd04040 C2D_Tricalbin-like C2 52.2 1E+02 0.0022 29.3 9.2 84 205-302 3-87 (115)
83 cd08390 C2A_Synaptotagmin-15-1 51.7 63 0.0014 31.0 7.8 91 199-301 12-106 (123)
84 PF10354 DUF2431: Domain of un 50.9 58 0.0013 34.0 7.8 102 20-129 21-128 (166)
85 cd08403 C2B_Synaptotagmin-3-5- 50.4 1.2E+02 0.0026 29.8 9.7 94 199-302 12-108 (134)
86 PF01591 6PF2K: 6-phosphofruct 50.4 15 0.00032 40.3 3.5 89 23-129 14-105 (222)
87 cd04048 C2A_Copine C2 domain f 50.2 1E+02 0.0022 29.7 9.0 92 207-305 6-101 (120)
88 cd04025 C2B_RasA1_RasA4 C2 dom 49.7 1.4E+02 0.003 28.8 9.9 85 203-302 2-87 (123)
89 cd08692 C2B_Tac2-N C2 domain s 49.3 65 0.0014 32.6 7.6 95 196-303 9-109 (135)
90 PF04179 Init_tRNA_PT: Initiat 48.4 26 0.00057 42.3 5.4 63 82-145 338-401 (451)
91 cd04050 C2B_Synaptotagmin-like 47.8 1.3E+02 0.0029 28.2 9.2 84 203-304 2-86 (105)
92 cd08382 C2_Smurf-like C2 domai 47.4 1.3E+02 0.0028 29.2 9.3 85 203-302 2-88 (123)
93 cd08385 C2A_Synaptotagmin-1-5- 46.8 93 0.002 30.0 8.2 94 199-304 14-110 (124)
94 cd08402 C2B_Synaptotagmin-1 C2 46.8 50 0.0011 32.6 6.4 94 198-301 12-108 (136)
95 cd04039 C2_PSD C2 domain prese 46.5 1.7E+02 0.0037 28.0 9.7 85 203-302 3-93 (108)
96 cd08407 C2B_Synaptotagmin-13 C 46.3 1.1E+02 0.0023 31.0 8.7 95 198-302 12-111 (138)
97 cd08406 C2B_Synaptotagmin-12 C 46.2 50 0.0011 33.2 6.2 93 196-300 10-107 (136)
98 cd08392 C2A_SLP-3 C2 domain fi 45.8 1.5E+02 0.0033 29.3 9.6 94 199-302 13-110 (128)
99 cd04029 C2A_SLP-4_5 C2 domain 45.2 2.2E+02 0.0047 27.9 10.6 97 199-305 13-113 (125)
100 cd08388 C2A_Synaptotagmin-4-11 44.3 1.1E+02 0.0024 30.2 8.3 34 198-231 13-47 (128)
101 cd04041 C2A_fungal C2 domain f 44.3 1E+02 0.0022 29.4 7.8 29 203-231 3-32 (111)
102 cd08521 C2A_SLP C2 domain firs 43.8 1.8E+02 0.0039 27.8 9.6 33 199-231 12-45 (123)
103 cd00276 C2B_Synaptotagmin C2 d 43.6 1.8E+02 0.0038 28.2 9.7 92 200-301 13-107 (134)
104 cd08677 C2A_Synaptotagmin-13 C 42.5 2E+02 0.0043 28.5 9.6 91 198-302 11-104 (118)
105 cd08675 C2B_RasGAP C2 domain s 42.5 1.4E+02 0.003 29.9 8.8 27 205-232 3-29 (137)
106 cd08404 C2B_Synaptotagmin-4 C2 42.3 2E+02 0.0044 28.3 10.0 92 199-302 13-109 (136)
107 cd08401 C2A_RasA2_RasA3 C2 dom 41.8 1.8E+02 0.0038 28.4 9.2 88 203-305 2-91 (121)
108 cd04054 C2A_Rasal1_RasA4 C2 do 41.5 1.7E+02 0.0037 28.3 9.1 84 203-301 2-86 (121)
109 cd04019 C2C_MCTP_PRT_plant C2 41.3 4E+02 0.0087 27.1 12.9 120 203-338 2-133 (150)
110 cd08409 C2B_Synaptotagmin-15 C 41.0 2E+02 0.0042 28.7 9.6 92 198-302 12-108 (137)
111 cd04044 C2A_Tricalbin-like C2 40.0 2.4E+02 0.0052 26.9 9.9 89 203-305 4-94 (124)
112 cd08688 C2_KIAA0528-like C2 do 39.9 1.5E+02 0.0033 28.1 8.3 87 204-304 2-92 (110)
113 cd08408 C2B_Synaptotagmin-14_1 37.4 1.2E+02 0.0025 30.5 7.4 94 198-302 12-110 (138)
114 cd08373 C2A_Ferlin C2 domain f 36.7 3.4E+02 0.0073 26.3 10.4 115 209-343 4-122 (127)
115 COG1054 Predicted sulfurtransf 36.6 1.6E+02 0.0035 33.7 8.8 102 19-147 92-196 (308)
116 COG1660 Predicted P-loop-conta 36.5 1.2E+02 0.0026 34.2 7.6 36 99-134 218-257 (286)
117 cd01531 Acr2p Eukaryotic arsen 36.4 2.3E+02 0.0049 26.9 8.9 24 43-68 5-28 (113)
118 cd08680 C2_Kibra C2 domain fou 36.1 1.7E+02 0.0037 28.9 8.2 34 198-231 11-44 (124)
119 cd08381 C2B_PI3K_class_II C2 d 36.1 3.1E+02 0.0067 26.7 9.9 94 201-305 13-110 (122)
120 cd04024 C2A_Synaptotagmin-like 35.9 2.7E+02 0.0059 26.7 9.6 30 203-232 3-34 (128)
121 cd00275 C2_PLC_like C2 domain 35.4 3.6E+02 0.0079 25.7 10.4 96 203-308 4-103 (128)
122 cd08377 C2C_MCTP_PRT C2 domain 34.9 3.1E+02 0.0067 26.0 9.7 87 203-305 3-90 (119)
123 cd01443 Cdc25_Acr2p Cdc25 enzy 34.6 86 0.0019 29.9 5.7 73 43-134 5-80 (113)
124 cd04031 C2A_RIM1alpha C2 domai 34.3 1.8E+02 0.004 27.8 8.0 34 199-232 14-47 (125)
125 cd04020 C2B_SLP_1-2-3-4 C2 dom 34.1 1.8E+02 0.0039 30.0 8.3 95 200-304 26-124 (162)
126 cd04038 C2_ArfGAP C2 domain pr 33.7 3.5E+02 0.0076 27.5 10.2 83 203-302 4-87 (145)
127 cd04045 C2C_Tricalbin-like C2 33.6 3E+02 0.0066 26.7 9.4 84 203-301 3-87 (120)
128 cd01528 RHOD_2 Member of the R 33.2 1.7E+02 0.0038 27.0 7.4 23 44-68 4-26 (101)
129 cd08389 C2A_Synaptotagmin-14_1 33.0 3.6E+02 0.0078 26.3 9.9 34 198-231 13-46 (124)
130 PLN02160 thiosulfate sulfurtra 31.7 54 0.0012 32.9 3.9 24 121-147 82-105 (136)
131 cd04032 C2_Perforin C2 domain 31.0 2.5E+02 0.0054 27.9 8.4 75 212-302 39-115 (127)
132 cd08405 C2B_Synaptotagmin-7 C2 30.8 2.2E+02 0.0048 28.0 8.1 94 199-302 13-109 (136)
133 cd08383 C2A_RasGAP C2 domain ( 30.8 4.6E+02 0.0099 24.7 11.9 84 204-304 3-88 (117)
134 cd04043 C2_Munc13_fungal C2 do 30.5 4.4E+02 0.0095 25.3 10.0 86 203-300 3-89 (126)
135 cd04010 C2B_RasA3 C2 domain se 28.9 3.2E+02 0.0069 27.9 9.0 28 203-232 2-29 (148)
136 cd04047 C2B_Copine C2 domain s 28.8 4.9E+02 0.011 24.3 9.8 88 207-305 6-99 (110)
137 cd00030 C2 C2 domain. The C2 d 27.9 4E+02 0.0086 23.0 9.0 83 209-305 7-90 (102)
138 TIGR01884 cas_HTH CRISPR locus 27.8 2.7E+02 0.0057 29.8 8.6 42 104-147 72-115 (203)
139 cd04028 C2B_RIM1alpha C2 domai 27.6 4.3E+02 0.0093 27.0 9.6 32 201-232 29-61 (146)
140 cd01448 TST_Repeat_1 Thiosulfa 27.6 1.1E+02 0.0024 29.3 5.2 25 121-147 80-104 (122)
141 TIGR02613 mob_myst_B mobile my 27.2 90 0.0019 33.2 4.8 48 101-149 88-146 (186)
142 cd04026 C2_PKC_alpha_gamma C2 26.5 3.6E+02 0.0077 26.2 8.7 92 201-302 13-106 (131)
143 cd04049 C2_putative_Elicitor-r 26.0 4.9E+02 0.011 24.9 9.5 30 203-232 3-32 (124)
144 cd08391 C2A_C2C_Synaptotagmin_ 25.7 4.9E+02 0.011 24.5 9.3 86 203-304 3-95 (121)
145 cd01530 Cdc25 Cdc25 phosphatas 25.6 70 0.0015 31.3 3.4 26 117-145 66-91 (121)
146 cd01534 4RHOD_Repeat_3 Member 25.5 4.2E+02 0.0091 24.2 8.5 23 44-68 3-25 (95)
147 cd04009 C2B_Munc13-like C2 dom 25.0 1.8E+02 0.0039 28.7 6.3 32 200-231 15-46 (133)
148 cd04018 C2C_Ferlin C2 domain t 24.4 4.4E+02 0.0095 27.1 9.0 69 220-302 33-102 (151)
149 cd01523 RHOD_Lact_B Member of 24.0 1.5E+02 0.0032 27.5 5.1 24 121-147 62-85 (100)
150 cd01444 GlpE_ST GlpE sulfurtra 23.4 1.5E+02 0.0032 26.9 4.9 24 121-147 57-80 (96)
151 cd04046 C2_Calpain C2 domain p 23.4 6.9E+02 0.015 24.2 12.6 77 208-301 10-87 (126)
152 KOG3824 Huntingtin interacting 23.3 1.8E+02 0.0038 33.6 6.2 53 94-147 329-395 (472)
153 cd04052 C2B_Tricalbin-like C2 22.8 3.5E+02 0.0075 25.7 7.5 68 220-302 11-79 (111)
154 cd01533 4RHOD_Repeat_2 Member 22.7 1.6E+02 0.0035 27.7 5.2 79 42-147 12-90 (109)
155 PF00581 Rhodanese: Rhodanese- 22.6 3.2E+02 0.0069 25.1 7.2 20 45-68 3-22 (113)
156 cd08622 PI-PLCXDc_CG14945_like 22.4 82 0.0018 35.7 3.6 28 100-129 79-106 (276)
157 smart00450 RHOD Rhodanese Homo 22.2 1.5E+02 0.0033 26.3 4.8 31 113-147 50-80 (100)
158 COG0075 Serine-pyruvate aminot 22.1 1.2E+02 0.0026 36.1 4.9 59 62-130 83-143 (383)
159 cd08616 PI-PLCXD1c Catalytic d 21.7 95 0.0021 35.4 4.0 29 102-131 98-126 (290)
160 cd08394 C2A_Munc13 C2 domain f 21.5 6.4E+02 0.014 25.4 9.2 83 203-305 4-86 (127)
161 PF05619 DUF787: Borrelia burg 21.2 1.9E+02 0.0041 33.0 5.9 98 39-149 100-201 (362)
162 smart00239 C2 Protein kinase C 21.2 5.5E+02 0.012 22.3 9.1 84 205-300 4-88 (101)
163 PRK03887 methylated-DNA--prote 20.9 2.7E+02 0.0058 29.6 6.6 35 20-58 21-55 (175)
164 TIGR03167 tRNA_sel_U_synt tRNA 20.8 1.4E+02 0.003 34.5 5.1 36 110-147 64-99 (311)
165 cd04035 C2A_Rabphilin_Doc2 C2 20.6 7.2E+02 0.016 23.7 9.4 33 199-231 13-45 (123)
166 TIGR02764 spore_ybaN_pdaB poly 20.5 5E+02 0.011 27.1 8.9 86 37-129 76-161 (191)
167 cd04017 C2D_Ferlin C2 domain f 20.2 6.1E+02 0.013 24.9 9.0 30 203-232 3-32 (135)
168 cd04016 C2_Tollip C2 domain pr 20.1 7.1E+02 0.015 24.5 9.3 82 203-301 4-87 (121)
169 KOG1089 Myotubularin-related p 20.1 1.5E+02 0.0033 36.8 5.4 20 121-142 345-364 (573)
170 cd04051 C2_SRC2_like C2 domain 20.0 5.2E+02 0.011 24.8 8.3 89 203-305 2-96 (125)
No 1
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.5e-57 Score=520.85 Aligned_cols=307 Identities=21% Similarity=0.351 Sum_probs=257.9
Q ss_pred hhhhccCCCCCceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCc
Q 001565 4 LSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDV 83 (1052)
Q Consensus 4 ~rr~~~rk~~LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~ 83 (1052)
.||..+++.||||+|||+||||| +||++++ |+.|||+|+||+.||+++|++ ||+|||||.|+. |+..+|++
T Consensus 3 k~r~~~~~~DLDltYIT~rIIam--sfPa~~~-es~yRN~l~dV~~fL~s~H~~-~y~vyNL~~er~-----yd~~~f~g 73 (434)
T KOG2283|consen 3 KRRYNEGGFDLDLTYITSRIIAM--SFPAEGI-ESLYRNNLEDVVLFLDSKHKD-HYKVYNLSSERL-----YDPSRFHG 73 (434)
T ss_pred cchhhhccccccceeeeeeEEEE--eCCCCcc-hhhhcCCHHHHHHHHhhccCC-ceEEEecCcccc-----CCcccccc
Confidence 47888899999999999999999 8999999 889999999999999999998 999999995443 36789999
Q ss_pred EEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhc
Q 001565 84 TVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREA 163 (1052)
Q Consensus 84 ~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~ 163 (1052)
+|..|+|.|||+| +|++|+.||++|++||++|++ ||||||||+||||+ |+||||||+|++++.++++||++|..+
T Consensus 74 ~V~~~~~~Dh~~P--~L~~l~~~c~~~~~WL~~d~~-nVvvvHCk~Gkgrt-g~~icA~L~~~~~~~ta~eald~~~~k- 148 (434)
T KOG2283|consen 74 RVARFGFDDHNPP--PLELLCPFCKSMDNWLSEDPK-NVVVVHCKAGKGRT-GVMICAYLIYSGISATAEEALDYFNEK- 148 (434)
T ss_pred ceeecCCCCCCCC--cHHHHHHHHHCHHHHHhcCcc-ceEEEEccCCCcce-EEEEeHHHHhhhhcCCHHHHHHHHhhh-
Confidence 9999999999998 899999999999999999999 99999999999998 999999999999999999999999622
Q ss_pred CccccccCCCCCCCchHHHHHHHHHHhhCCCCCCCCCC--ceeEEEEEEeecCccCC-CCccceEEEeeccCcccCCCCC
Q 001565 164 PKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPER--ALSLDCVILRAIPNFDA-QNGCRPIIRIFGRNFRSKGGLS 240 (1052)
Q Consensus 164 ~~~~~~~~s~~n~~PSQ~RYV~Yf~~ll~~~~~pp~~~--~l~L~~IiL~~iP~f~~-~~GcrP~l~Iy~~~~~~~~~~~ 240 (1052)
|+..+.+..+++|||+|||+||++++......++.+ .++|+.++|..||+|.+ .+||+++++||++
T Consensus 149 --R~~~~~~~~~~~PSq~RYv~Y~~~~l~~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~--------- 217 (434)
T KOG2283|consen 149 --RFDEGKSKGVTIPSQRRYVGYFSRVLLNGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQG--------- 217 (434)
T ss_pred --hccccccCCccCchhhHHHHHHHHHhhcCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeec---------
Confidence 233343344489999999999999654445567777 99999999999999544 4999999999998
Q ss_pred ccEEEeccccccccceecccCCcEEEEeecccccCCeEEEEEeCCCCC-------CcceeEEEEEeecccccC--CeEEE
Q 001565 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDP-------EREVMMFRVMFNTAFIRS--NILML 311 (1052)
Q Consensus 241 ~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV~I~~~h~~~~~-------~~~~~mFr~~FnT~FI~~--n~L~l 311 (1052)
.+.+|++..+. .++.|.. +++ |+|++++.++ ++|||.+... ..+...|.++|||+|+.. ..+.+
T Consensus 218 k~~~~~~~s~~-~~~~~~~-~g~-~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (434)
T KOG2283|consen 218 KKKVYSFSSDG-IMRLGEL-DGK-IVIPLGLRVD----VKCYHKRTSSGNRGILKDKEFKGCQIQFYTGPFPEDETVVRF 290 (434)
T ss_pred ceeeEEeccCC-ccccccc-ccc-eecccccccc----eEEEeeccccCCcceeeccccceEEEeccCCCccccceeeec
Confidence 47788888877 8888887 665 7899988887 9999976432 336678999999999874 45667
Q ss_pred ecCCCCccccccCCCCCCcEEEEEEecCCCCC
Q 001565 312 NSENLDILWDSKERYPKGFRAEVLFGDVESIS 343 (1052)
Q Consensus 312 ~k~eLD~~~~~k~~fp~dF~Vel~F~~~~~~~ 343 (1052)
.+.+++.. ...+.+..-|.+.+.-.+.....
T Consensus 291 ~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~ 321 (434)
T KOG2283|consen 291 FQADLPIY-VSNEFVFNFFQVSLEVENTPNDD 321 (434)
T ss_pred ccccCCcc-ccccccccccceeeecccCcccc
Confidence 77777763 33466677777777654444333
No 2
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=99.95 E-value=1.3e-27 Score=236.97 Aligned_cols=131 Identities=34% Similarity=0.666 Sum_probs=107.7
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccceecccCCcEEEEeecccccCCe
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDV 277 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV 277 (1052)
++.++|+|++|+|++||.|+.++|||||++||+++ +.+|.+...+...+.|.+.. ..|.++.++.|+|||
T Consensus 1 ~~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~---------~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~GDV 70 (134)
T PF10409_consen 1 PPPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG---------KKVFSTSKSYEDPKSYEQDS-VIIELPKNLPLRGDV 70 (134)
T ss_dssp -S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETT---------EEEEETCCTCCCCCEEETTC-EEEEEEEEEEEESEE
T ss_pred CCCeeEEEEEEEEECCCccCCCCCEEEEEEEECCC---------ccEEEeccceecccccccee-EEEEeCCCCeEeCCE
Confidence 35688999999999999998889999999999995 67877766666666664443 346677789999999
Q ss_pred EEEEEeCCCCCCcceeEEEEEeeccccc--CCeEEEecCCCCccccc-cCCCCCCcEEEEEEec
Q 001565 278 VLECVHLDLDPEREVMMFRVMFNTAFIR--SNILMLNSENLDILWDS-KERYPKGFRAEVLFGD 338 (1052)
Q Consensus 278 ~I~~~h~~~~~~~~~~mFr~~FnT~FI~--~n~L~l~k~eLD~~~~~-k~~fp~dF~Vel~F~~ 338 (1052)
+|+|||.+.....+++||||||||+||+ ++.|+|+|+|||.++++ .++|++||+|||+|++
T Consensus 71 ~i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e 134 (134)
T PF10409_consen 71 LIKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE 134 (134)
T ss_dssp EEEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred EEEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence 9999999866666789999999999999 99999999999999874 3899999999999986
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=2.1e-27 Score=275.40 Aligned_cols=154 Identities=16% Similarity=0.322 Sum_probs=128.7
Q ss_pred ccCCCCcCCCCCCCcCCcccccccc--ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCCCCCCCcccCC-CCC
Q 001565 895 RLNSGVSHAPKKASLKPLHWVKVTR--AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRRGS-NIN 971 (1052)
Q Consensus 895 ~~l~~~~~~~p~~klK~LhW~KI~~--~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~~~k~~~~~~s-~~k 971 (1052)
-++..++..++...||+++|.||.. -.++++|.+++++. ....++ |.+|+..|+.+.+..+....+..+++ .+|
T Consensus 612 ~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk--~en~dl-fakL~~~Fatq~k~~k~~e~~eekkt~~kK 688 (1102)
T KOG1924|consen 612 FGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDK--LENDDL-FAKLALKFATQPKVKKEQEGGEEKKTGTKK 688 (1102)
T ss_pred CCCCccccCCCCCccccCCccccCccccCccceeeecchhh--ccchHH-HHHHHHHhhccccccccccccccccchhhh
Confidence 3467788889999999999999973 45899999998533 222222 89999999998666552222222222 256
Q ss_pred CCcchhhhhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCCCCCCCCCCCCC
Q 001565 972 KPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVP 1051 (1052)
Q Consensus 972 K~~kvslLD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd~~~Lg~~EqFl 1051 (1052)
|.+...|||.|.+||++|+|+.|||+.+||+.+||++|+++|++..|++|++.+|..|.+..|.++..+.+.|.+.|||.
T Consensus 689 k~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~ 768 (1102)
T KOG1924|consen 689 KVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFV 768 (1102)
T ss_pred hhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHh
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=99.86 E-value=5.2e-22 Score=233.14 Aligned_cols=144 Identities=29% Similarity=0.529 Sum_probs=122.6
Q ss_pred CCCCCCCcCCcccccccc-ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCCCCCCCccc--CCCCCCCcchhh
Q 001565 902 HAPKKASLKPLHWVKVTR-AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRR--GSNINKPEKVQL 978 (1052)
Q Consensus 902 ~~~p~~klK~LhW~KI~~-~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~~~k~~~~~--~s~~kK~~kvsl 978 (1052)
..+++.+||+|||+||.. ++++|||+++++. .++|+++||++|+++.......+..... ....++.++|+|
T Consensus 3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~------~~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~i 76 (432)
T smart00498 3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDEN------SEGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKI 76 (432)
T ss_pred CCCCCCCCcCcCceeCCCccccCChhhhcCcc------cccCHHHHHHHhCcCccccCccccccccccccccccccceEe
Confidence 457899999999999985 6899999999742 2799999999999876554311111111 112345677999
Q ss_pred hhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCC-CCCCCCCCCCC
Q 001565 979 VELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGD-KVMLGKCEQVP 1051 (1052)
Q Consensus 979 LD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd-~~~Lg~~EqFl 1051 (1052)
||.||+|||+|+|++|+++.++|++||+.||..+|+.|.|++|++++||.||+++|++|.|+ .+.|+.+|||+
T Consensus 77 ld~krs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl 150 (432)
T smart00498 77 LDPKRSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFL 150 (432)
T ss_pred echhHHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 79999999997
No 5
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=99.82 E-value=1.7e-21 Score=224.46 Aligned_cols=145 Identities=35% Similarity=0.627 Sum_probs=112.6
Q ss_pred cCCCCCCCcCCcccccccc-ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCCCCCCCcccCCCCCCCcchhhh
Q 001565 901 SHAPKKASLKPLHWVKVTR-AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRRGSNINKPEKVQLV 979 (1052)
Q Consensus 901 ~~~~p~~klK~LhW~KI~~-~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~~~k~~~~~~s~~kK~~kvslL 979 (1052)
...+++.+||+|||++|.. ++++|||++++..+.. ..+|+++||++|+++.......+ ......++.+.++||
T Consensus 3 ~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~---~~~d~~~le~~F~~~~~~~~~~~---~~~~~~~~~~~~~iL 76 (370)
T PF02181_consen 3 KKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFN---IDIDFEELEELFAKKEKEKKSKK---KQASKKKKKKKISIL 76 (370)
T ss_dssp -----SS-B------EESSGGCTTSCCCCTCCHHHH---CTSHHHHHHHHTBSCECHHHH-------HCCCCTTCCESSS
T ss_pred CCCCCCCCCcCCCceecCcccccCCccccCcccccc---hhhhHHHHHHHhccccccccccc---ccccccccccccccc
Confidence 4567899999999999995 7899999999854321 27899999999999877644111 112334788889999
Q ss_pred hhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCCCCCCCCCCCCC
Q 001565 980 ELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVP 1051 (1052)
Q Consensus 980 D~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd~~~Lg~~EqFl 1051 (1052)
|.||+|||+|+|++|+++.++|+++|+.||..+|+.|.|+.|++++||.||+++|++|.|+.+.|+.+|||+
T Consensus 77 d~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~ 148 (370)
T PF02181_consen 77 DPKRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFL 148 (370)
T ss_dssp -HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHH
T ss_pred chHHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996
No 6
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.65 E-value=4e-15 Score=153.33 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=115.3
Q ss_pred CCCceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCC
Q 001565 12 PPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQ 91 (1052)
Q Consensus 12 ~~LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~ 91 (1052)
+|-.++||+.|+|+| .-|.+. .+.+-++.|++.+ -..|.|++++.|.. ..+...+..+.++|+.
T Consensus 7 ~~~~~~~~~~r~~~~--~~P~~~--------~~~~~l~~L~~~g---I~~Iv~l~~~~~~~---~~~~~~gi~~~~~p~~ 70 (166)
T PTZ00242 7 KDRQIEYVLFKFLIL--DAPSPS--------NLPLYIKELQRYN---VTHLVRVCGPTYDA---ELLEKNGIEVHDWPFD 70 (166)
T ss_pred CCcceeeeceEEEEe--cCCCcc--------cHHHHHHHHHhCC---CeEEEecCCCCCCH---HHHHHCCCEEEecCCC
Confidence 355799999999999 456532 2323345666653 46799998876532 2345678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhh--CCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccc
Q 001565 92 YEGCPLLPMSLIQHFLRVCEHWLLL--GDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQ 169 (1052)
Q Consensus 92 d~g~P~p~L~~L~~~c~~~~~WL~~--d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~ 169 (1052)
|++.| +.+.+..|++.++.++.. +.. +.|+|||.+|.||+ |+++||||+..+.+ +.++|++++.++++..
T Consensus 71 D~~~P--~~~~i~~~~~~i~~~~~~~~~~g-~~V~VHC~aGigRS-gt~~a~yL~~~~~~-s~~eAi~~vr~~R~~~--- 142 (166)
T PTZ00242 71 DGAPP--PKAVIDNWLRLLDQEFAKQSTPP-ETIAVHCVAGLGRA-PILVALALVEYGGM-EPLDAVGFVREKRKGA--- 142 (166)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHhhccCC-CeEEEECCCCCCHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHCCCC---
Confidence 98877 788899999999888866 444 78999999999997 99999999998877 5778999996544321
Q ss_pred cCCCCCCCchHHHHHHHHHHhhCC
Q 001565 170 LLSPLNPFPSQLRYLQYVARRNIT 193 (1052)
Q Consensus 170 ~~s~~n~~PSQ~RYV~Yf~~ll~~ 193 (1052)
+ ...|++||+.|.+.++.
T Consensus 143 ----i--~~~Q~~~l~~~~~~~~~ 160 (166)
T PTZ00242 143 ----I--NQTQLQFLKKYKPRKKA 160 (166)
T ss_pred ----c--hHHHHHHHHHHHHHhcc
Confidence 1 46899999999876543
No 7
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=99.62 E-value=1.6e-15 Score=178.79 Aligned_cols=151 Identities=22% Similarity=0.395 Sum_probs=123.8
Q ss_pred CCCCcCCCCCCCcCCcccccccc-ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCC-CCCCCcccCCCCCCCc
Q 001565 897 NSGVSHAPKKASLKPLHWVKVTR-AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSG-TNKTGVRRGSNINKPE 974 (1052)
Q Consensus 897 l~~~~~~~p~~klK~LhW~KI~~-~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~-~~k~~~~~~s~~kK~~ 974 (1052)
.+.......+.++-.++|..+.. +++||++++++ |+.+...+|++++|+.|........ ......+.+...+...
T Consensus 359 ~~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~---De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~q 435 (830)
T KOG1923|consen 359 ATIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELN---DEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQ 435 (830)
T ss_pred HhhcCCCcccccCCCccccccCccccccchhhhhh---HHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhh
Confidence 45566667788899999999984 88999999987 4567778999999999998332222 1111122233345678
Q ss_pred chhhhhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCC---CCCCCCCCCCC
Q 001565 975 KVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGD---KVMLGKCEQVP 1051 (1052)
Q Consensus 975 kvslLD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd---~~~Lg~~EqFl 1051 (1052)
+++++|.+|..|++|-++ +.+..++|+.||-.+|...|..+.|++|.+|+||++|..+|++|..+ .+.|...++|+
T Consensus 436 k~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFm 514 (830)
T KOG1923|consen 436 KRTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFM 514 (830)
T ss_pred hhhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhh
Confidence 999999999999999999 99999999999999999999999999999999999999999999754 47899998886
No 8
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=99.54 E-value=9.1e-15 Score=164.40 Aligned_cols=134 Identities=25% Similarity=0.386 Sum_probs=112.0
Q ss_pred CCCCcCCcccccccc---------ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCCCCCCCcccCCCCCCCcc
Q 001565 905 KKASLKPLHWVKVTR---------AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRRGSNINKPEK 975 (1052)
Q Consensus 905 p~~klK~LhW~KI~~---------~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~~~k~~~~~~s~~kK~~k 975 (1052)
.++++-+|||.-++- ..++|+|+.++. ..+|...||.||+.++.+..-.|+ ....|...
T Consensus 280 ~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~-------~~~D~~r~~~LFEsr~~~~~P~KK-----~~E~r~~~ 347 (817)
T KOG1925|consen 280 TKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDP-------VSVDTARLEHLFESRAKEVLPSKK-----AGEGRRTM 347 (817)
T ss_pred ccCceeEEEeecceecCCCCCccccccchhhhccCc-------ceecHHHHHHHHHHhhhhhccchh-----hcccceee
Confidence 355667899997762 247899999984 348999999999988766552232 22357778
Q ss_pred hhhhhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhh--cCCCCCCCCCCCCC
Q 001565 976 VQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNY--AGDKVMLGKCEQVP 1051 (1052)
Q Consensus 976 vslLD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y--~gd~~~Lg~~EqFl 1051 (1052)
.++||.||+|.|+|.|.+|. ++..|..||+++|+-+++.|.|+.|++|+||.||++.|+.- ....-.||.+|||+
T Consensus 348 ~tVL~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfL 424 (817)
T KOG1925|consen 348 TTVLDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFL 424 (817)
T ss_pred eeecCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHH
Confidence 99999999999999999998 89999999999999999999999999999999999998874 45567999999996
No 9
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.47 E-value=6.2e-13 Score=142.30 Aligned_cols=145 Identities=10% Similarity=0.103 Sum_probs=105.9
Q ss_pred ceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC
Q 001565 15 GLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG 94 (1052)
Q Consensus 15 DLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g 94 (1052)
.+.|-.=|+|+|+ -|... .+ .+-+..|+..+- ..|..+|++.|+. ..+...+.++.+++|.|++
T Consensus 86 ~ie~~~~rfLi~~--~P~~~----~~----~~yl~eLk~~gV---~~lVrlcE~~Yd~---~~~~~~GI~~~~lpipDg~ 149 (241)
T PTZ00393 86 KIEHGKIKILILD--APTND----LL----PLYIKEMKNYNV---TDLVRTCERTYND---GEITSAGINVHELIFPDGD 149 (241)
T ss_pred hhccCceeEEEeC--CCCHH----HH----HHHHHHHHHcCC---CEEEECCCCCCCH---HHHHHcCCeEEEeecCCCC
Confidence 3444455899994 56532 12 222345555443 4578899886642 2445678899999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCC
Q 001565 95 CPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPL 174 (1052)
Q Consensus 95 ~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~ 174 (1052)
+| +.+.|.+|+..++..+..+. .|+|||++|.||| |+|+||||+..|. +.++|++++...++..+
T Consensus 150 aP--s~~~i~~~l~~i~~~l~~g~---~VaVHC~AGlGRT-Gtl~AayLI~~Gm--speeAI~~VR~~RPgAI------- 214 (241)
T PTZ00393 150 AP--TVDIVSNWLTIVNNVIKNNR---AVAVHCVAGLGRA-PVLASIVLIEFGM--DPIDAIVFIRDRRKGAI------- 214 (241)
T ss_pred CC--CHHHHHHHHHHHHHHHhcCC---eEEEECCCCCCHH-HHHHHHHHHHcCC--CHHHHHHHHHHHCCCCC-------
Confidence 87 79999999999998886554 5999999999998 9999999998653 67789999965443222
Q ss_pred CCCchHHHHHHHHHHhhC
Q 001565 175 NPFPSQLRYLQYVARRNI 192 (1052)
Q Consensus 175 n~~PSQ~RYV~Yf~~ll~ 192 (1052)
...|++||+-|.....
T Consensus 215 --n~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 215 --NKRQLQFLKAYKKKKK 230 (241)
T ss_pred --CHHHHHHHHHHHHhcc
Confidence 3579999998887644
No 10
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.44 E-value=1.3e-12 Score=135.31 Aligned_cols=154 Identities=11% Similarity=0.113 Sum_probs=113.5
Q ss_pred CCCceeeeeCc-EEEEecCCC---CCCCCccccc-ccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEe
Q 001565 12 PPDGLLEFIER-VYVFDSCFS---TEVVPDGMYQ-LYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVL 86 (1052)
Q Consensus 12 ~~LDLtYIT~R-Iiam~~~fP---ae~~~E~~YR-N~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~ 86 (1052)
...|.++|+.. +|++ +-| +-|+ |+.|- +-...+..+|+.+. -=.|+-|.++-|+. .++.+-+..-.
T Consensus 49 e~gdfnwI~p~~~i~f--~~p~~~s~gi-~~~f~~~~~~~~~~~~~~~~---v~s~vrln~~~yd~---~~f~~~Gi~h~ 119 (225)
T KOG1720|consen 49 ENGDFNWIIPDRFIAF--AGPHLKSRGI-ESGFPLHLPQPYIQYFKNNN---VTSIVRLNKRLYDA---KRFTDAGIDHH 119 (225)
T ss_pred CCCCcceeccchhhhh--cCccccccch-hhcccccCChhHHHHhhhcc---cceEEEcCCCCCCh---HHhcccCceee
Confidence 45899999998 6666 222 2345 56666 55666777777322 23466677766542 23444556678
Q ss_pred eCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCcc
Q 001565 87 DYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKG 166 (1052)
Q Consensus 87 ~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~ 166 (1052)
|++|.|.++| +++.+.+|++.+++-++ +.+ |+|||+||-||| |+||||||||...++ +.+|++.+...++..
T Consensus 120 ~l~f~Dg~tP--~~~~v~~fv~i~e~~~~-~g~---iaVHCkaGlGRT-G~liAc~lmy~~g~t-a~eaI~~lR~~RpG~ 191 (225)
T KOG1720|consen 120 DLFFADGSTP--TDAIVKEFVKIVENAEK-GGK---IAVHCKAGLGRT-GTLIACYLMYEYGMT-AGEAIAWLRICRPGA 191 (225)
T ss_pred eeecCCCCCC--CHHHHHHHHHHHHHHHh-cCe---EEEEeccCCCch-hHHHHHHHHHHhCCC-HHHHHHHHHhcCCcc
Confidence 8899998887 89999999999999998 665 999999999998 999999999996665 555999986444332
Q ss_pred ccccCCCCCCCchHHHHHHHHHHh
Q 001565 167 FLQLLSPLNPFPSQLRYLQYVARR 190 (1052)
Q Consensus 167 ~~~~~s~~n~~PSQ~RYV~Yf~~l 190 (1052)
+ ..|-|..|+.-|..+
T Consensus 192 V--------~gpqQ~~l~~~q~~~ 207 (225)
T KOG1720|consen 192 V--------IGPQQHKLLHKQRDL 207 (225)
T ss_pred c--------cCHHHHHHHHHHHHH
Confidence 2 578899999888774
No 11
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=99.39 E-value=2e-12 Score=164.06 Aligned_cols=144 Identities=33% Similarity=0.532 Sum_probs=118.6
Q ss_pred CCCCCCcCCccccccc-cccCCCccccccccccccCCCCCCh---HHHHHHHhccCCCCCCC-CCCcccCCCCCCCcchh
Q 001565 903 APKKASLKPLHWVKVT-RAMQGSLWADSQKQENHSRAPEIDI---SELESLFSAASDGSGTN-KTGVRRGSNINKPEKVQ 977 (1052)
Q Consensus 903 ~~p~~klK~LhW~KI~-~~i~gTiW~~~~~~~~~~~~~eiD~---~eLE~lFs~~~~~~~~~-k~~~~~~s~~kK~~kvs 977 (1052)
..++.+||++||+++. ......+|.++.... ..+|. +.+|.+|+......... +.....+.+.-..+.++
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSS-----SLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLK 464 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCC-----cCCCCCcccccccchhhhhcccCCCCCCCcccccccccccccc
Confidence 5678999999999998 467889999998543 22343 89999998876655411 11122222222336688
Q ss_pred hhhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCCCCCCCCCCCCC
Q 001565 978 LVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVP 1051 (1052)
Q Consensus 978 lLD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd~~~Lg~~EqFl 1051 (1052)
++|.++++|++|+|+.|++..+++.++|+.+|+.++..++|++|++++|++||..+|+.|.++...|+.+|+|+
T Consensus 465 v~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~ 538 (833)
T KOG1922|consen 465 VLDPRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFF 538 (833)
T ss_pred ccCCCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
No 12
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.18 E-value=4e-10 Score=111.99 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=94.4
Q ss_pred eeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCC
Q 001565 17 LEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCP 96 (1052)
Q Consensus 17 tYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P 96 (1052)
+.|+++|++. ++++.. + ..+|.+.. =-.|.||+++...+ ...+.+..++|..|++..
T Consensus 2 ~~I~~~l~~G--~~~~~~--------~----~~~l~~~g---i~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~ 58 (138)
T smart00195 2 SEILPHLYLG--SYSSAL--------N----LALLKKLG---ITHVINVTNEVPNL------NKKGFTYLGVPILDNTET 58 (138)
T ss_pred cEEeCCeEEC--ChhHcC--------C----HHHHHHcC---CCEEEEccCCCCCC------CCCCCEEEEEECCCCCCC
Confidence 5789999888 566522 1 34555542 24688998875421 234567888898885432
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCCCC
Q 001565 97 LLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNP 176 (1052)
Q Consensus 97 ~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~n~ 176 (1052)
...+.+..+++.++.....+.. |+|||++|.+|+ |+++||||++...++ .++|++++.++++ .+ ..
T Consensus 59 -~~~~~~~~~~~~i~~~~~~~~~---VlVHC~~G~~RS-~~v~~~yl~~~~~~~-~~~A~~~v~~~R~-~~-------~p 124 (138)
T smart00195 59 -KISPYFPEAVEFIEDAEKKGGK---VLVHCQAGVSRS-ATLIIAYLMKYRNLS-LNDAYDFVKDRRP-II-------SP 124 (138)
T ss_pred -ChHHHHHHHHHHHHHHhcCCCe---EEEECCCCCchH-HHHHHHHHHHHhCCC-HHHHHHHHHHHCC-cc-------CC
Confidence 2456666677777766655554 999999999997 999999999988884 6679999964432 21 13
Q ss_pred CchHHHHHHHHHH
Q 001565 177 FPSQLRYLQYVAR 189 (1052)
Q Consensus 177 ~PSQ~RYV~Yf~~ 189 (1052)
...|++-|.-|++
T Consensus 125 ~~~~~~qL~~~e~ 137 (138)
T smart00195 125 NFGFLRQLIEYER 137 (138)
T ss_pred CHhHHHHHHHHhh
Confidence 5678888887764
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.17 E-value=8.7e-11 Score=119.40 Aligned_cols=124 Identities=12% Similarity=0.071 Sum_probs=77.4
Q ss_pred eCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCc----c-chhhhhhcccCcEEeeCCCCCCC
Q 001565 20 IERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEK----Q-SEFAEILCEYDVTVLDYPRQYEG 94 (1052)
Q Consensus 20 T~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~----~-s~~~~~~s~f~~~V~~yP~~d~g 94 (1052)
+.+|..+ ..|.-.+ .. +|.+++.=+..|+...-. .|+-|+++.. + .++...+...++.+.+||+.|.+
T Consensus 40 ~~~Lglt--~~PG~k~-~d-~~RdL~~DL~~Lk~~G~~---~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~ 112 (168)
T PF05706_consen 40 SGFLGLT--FLPGCKF-KD-WRRDLQADLERLKDWGAQ---DVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS 112 (168)
T ss_dssp SSEEEEE--S-TT-EE-TT-EEB-HHHHHHHHHHTT-----EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS
T ss_pred cceeeee--cCCCccc-cc-ccchHHHHHHHHHHCCCC---EEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC
Confidence 4455555 6787655 44 444444445566664433 3566765422 1 23444567788999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHH
Q 001565 95 CPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTL 156 (1052)
Q Consensus 95 ~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al 156 (1052)
+| .++.+..++..+..+|.++.+ |+|||++|.||| |+|+||+|++.+..-..++|+
T Consensus 113 aP--d~~~~~~i~~eL~~~L~~g~~---V~vHC~GGlGRt-GlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 113 AP--DFAAAWQILEELAARLENGRK---VLVHCRGGLGRT-GLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -----HHHHHHHHHHHHHHHHTT-----EEEE-SSSSSHH-HHHHHHHHHHH-SSS-HHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHcCCE---EEEECCCCCCHH-HHHHHHHHHHHcCCCChhhcC
Confidence 98 789999999999999999876 999999999998 999999999999888888775
No 14
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.10 E-value=4.6e-10 Score=111.24 Aligned_cols=99 Identities=23% Similarity=0.346 Sum_probs=78.7
Q ss_pred hhcccCcEEeeCCC-CCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHH
Q 001565 77 ILCEYDVTVLDYPR-QYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRT 155 (1052)
Q Consensus 77 ~~s~f~~~V~~yP~-~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~A 155 (1052)
+.+.+++..+..+- ++.|.| +++.|+..++.|++++++++. |.||||||++|. +||++||||..+.++.++ |
T Consensus 70 ~wk~~giE~L~i~T~D~~~~P--s~~~i~~aVeFi~k~asLGkt---vYVHCKAGRtRS-aTvV~cYLmq~~~wtpe~-A 142 (183)
T KOG1719|consen 70 LWKNYGIEFLVIPTRDYTGAP--SLENIQKAVEFIHKNASLGKT---VYVHCKAGRTRS-ATVVACYLMQHKNWTPEA-A 142 (183)
T ss_pred HHHhccceeEEeccccccCCC--CHHHHHHHHHHHHhccccCCe---EEEEecCCCccc-hhhhhhhhhhhcCCCHHH-H
Confidence 44555555444332 345676 899999999999999999998 999999999996 999999999999987665 9
Q ss_pred HHHHHHhcCccccccCCCCCCCchHHHHHHHHHHh
Q 001565 156 LEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARR 190 (1052)
Q Consensus 156 l~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~~l 190 (1052)
++++.+.+++-+ ..|+|++-|.-|.+.
T Consensus 143 ~~~vr~iRp~Vl--------L~~~Qw~~l~ef~~~ 169 (183)
T KOG1719|consen 143 VEHVRKIRPRVL--------LRPAQWDVLKEFYKQ 169 (183)
T ss_pred HHHHHhcCccee--------ecHHHHHHHHHHHHH
Confidence 999976655443 589999999766543
No 15
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.04 E-value=9.6e-10 Score=115.03 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=79.9
Q ss_pred ccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHH
Q 001565 80 EYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIV 159 (1052)
Q Consensus 80 ~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~ 159 (1052)
..+.++.++++.|++.| .++.|.+++..|++-++++.+ |||||.+|.||| ||++|||||+.+.+...++++.++
T Consensus 70 ~~~~~~~~~~~~D~~~p--~~~~l~~~v~~i~~~~~~g~k---VvVHC~~GigRS-gtviaA~lm~~~~~~~~~~~i~~~ 143 (180)
T COG2453 70 NDGIQVLHLPILDGTVP--DLEDLDKIVDFIEEALSKGKK---VVVHCQGGIGRS-GTVIAAYLMLYGGLSLADEAIAVK 143 (180)
T ss_pred cCCceeeeeeecCCCCC--cHHHHHHHHHHHHHHHhcCCe---EEEEcCCCCchH-HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567889999999998 789999999999999988876 999999999997 999999999998899999888877
Q ss_pred HHhcCccccccCCCCCCCchHHHHHHHHHHhh
Q 001565 160 HREAPKGFLQLLSPLNPFPSQLRYLQYVARRN 191 (1052)
Q Consensus 160 ~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~~ll 191 (1052)
.++++.. +...-|.+|...+....
T Consensus 144 ~~~r~~~--------v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 144 RRRRPGA--------VVTEIQHLFELEQELFR 167 (180)
T ss_pred HhcCCcc--------cccHHHHHHHHHHHHHH
Confidence 5443211 14677888777666543
No 16
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.03 E-value=1e-09 Score=108.22 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=86.2
Q ss_pred HHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEe
Q 001565 48 LTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHS 127 (1052)
Q Consensus 48 ~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHC 127 (1052)
..+|++.. =-.|.|++.+.... ......+...++++..|++.- ...+.+..+++.|+.+...+.+ |+|||
T Consensus 11 ~~~l~~~~---I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~-~~~~~~~~~~~~i~~~~~~~~~---VlVHC 80 (133)
T PF00782_consen 11 IAFLKNLG---ITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEE-PILEHLDQAVEFIENAISEGGK---VLVHC 80 (133)
T ss_dssp HHHHHHTT---EEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTS-HGGGGHHHHHHHHHHHHHTTSE---EEEEE
T ss_pred HHHHHHCC---CCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCc-chHHHHHHHHHhhhhhhcccce---eEEEe
Confidence 45565553 23688999875431 112344556667777774333 3578888888888888776665 99999
Q ss_pred cCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCCCCCchHHHHHHHHHH
Q 001565 128 ERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVAR 189 (1052)
Q Consensus 128 k~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~~ 189 (1052)
.+|.+|+ |+++|||||+.+.+ +.++|++++.++++ .+ +..+.|+++|.-|++
T Consensus 81 ~~G~~RS-~~v~~ayLm~~~~~-~~~~A~~~v~~~rp-~~-------~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 81 KAGLSRS-GAVAAAYLMKKNGM-SLEEAIEYVRSRRP-QI-------NPNPSFIRQLYEYEK 132 (133)
T ss_dssp SSSSSHH-HHHHHHHHHHHHTS-SHHHHHHHHHHHST-TS-------THHHHHHHHHHHHHH
T ss_pred CCCcccc-hHHHHHHHHHHcCC-CHHHHHHHHHHHCC-CC-------CCCHHHHHHHHHhhc
Confidence 9999997 99999999998888 66679999965442 21 134679999987764
No 17
>PHA03247 large tegument protein UL36; Provisional
Probab=99.01 E-value=1.8e-06 Score=113.38 Aligned_cols=11 Identities=18% Similarity=0.761 Sum_probs=7.3
Q ss_pred ccCCCcccccc
Q 001565 920 AMQGSLWADSQ 930 (1052)
Q Consensus 920 ~i~gTiW~~~~ 930 (1052)
..+.++|...+
T Consensus 3023 sl~q~~~~~~~ 3033 (3151)
T PHA03247 3023 SLKQTLWPPDD 3033 (3151)
T ss_pred CcccCCCCCCC
Confidence 35778887665
No 18
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=98.98 E-value=7.7e-09 Score=102.43 Aligned_cols=121 Identities=17% Similarity=0.052 Sum_probs=84.2
Q ss_pred eeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCC
Q 001565 16 LLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGC 95 (1052)
Q Consensus 16 LtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~ 95 (1052)
++.|+++|++- ++++..- ..+|++.. =-.|+||+++.+. .....-+..+.+|++.|.+.
T Consensus 2 ~~~i~~~l~~g--~~~~~~d------------~~~L~~~g---i~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~ 60 (139)
T cd00127 2 LSEITPGLYLG--SYPAASD------------KELLKKLG---ITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPS 60 (139)
T ss_pred cCEEcCCeEEC--ChhHhcC------------HHHHHHcC---CCEEEEcccCCCC----cccCCCCceEEEEEceeCCC
Confidence 67899999988 6765321 33454432 2469999887653 12233456788888888764
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhc
Q 001565 96 PLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREA 163 (1052)
Q Consensus 96 P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~ 163 (1052)
. .....+..+++.++..+..+.. |+|||.+|.+|+ |+|+++||++.+.+ +.++|++++.+.+
T Consensus 61 ~-~~~~~~~~~~~~i~~~~~~~~~---vlVHC~~G~~Rs-~~~~~~~l~~~~~~-~~~~a~~~vr~~r 122 (139)
T cd00127 61 Q-DISKYFDEAVDFIDDAREKGGK---VLVHCLAGVSRS-ATLVIAYLMKTLGL-SLREAYEFVKSRR 122 (139)
T ss_pred C-ChHHHHHHHHHHHHHHHhcCCc---EEEECCCCCchh-HHHHHHHHHHHcCC-CHHHHHHHHHHHC
Confidence 4 2345566677777776665544 999999999997 99999999998876 5567999996543
No 19
>PRK12361 hypothetical protein; Provisional
Probab=98.93 E-value=1e-08 Score=124.67 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=102.4
Q ss_pred ceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC
Q 001565 15 GLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG 94 (1052)
Q Consensus 15 DLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g 94 (1052)
-...|+++|++. ++++.. | ..+|++ ++- =.|.||++|.... ......-+.+..++|..|+.
T Consensus 94 ~~~~I~~~l~lG--~~~~a~-----------d-~~~L~~-~gI--~~Vldlt~E~~~~--~~~~~~~~i~yl~iPi~D~~ 154 (547)
T PRK12361 94 AIQKIDENLYLG--CRLFPA-----------D-LEKLKS-NKI--TAILDVTAEFDGL--DWSLTEEDIDYLNIPILDHS 154 (547)
T ss_pred cceEEcCcEEEC--CCCCcc-----------c-HHHHHH-cCC--CEEEEcccccccc--cccccccCceEEEeecCCCC
Confidence 468899999999 566422 1 234543 332 2477998653210 00111223567788888887
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCC
Q 001565 95 CPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPL 174 (1052)
Q Consensus 95 ~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~ 174 (1052)
.| .++.+.+.++.|++.++++.. |+|||++|.+|+ ++++|||||+.+...+.++|++++.++++.-.
T Consensus 155 ~p--~~~~l~~a~~~i~~~~~~~~~---VlVHC~~G~sRS-a~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~------- 221 (547)
T PRK12361 155 VP--TLAQLNQAINWIHRQVRANKS---VVVHCALGRGRS-VLVLAAYLLCKDPDLTVEEVLQQIKQIRKTAR------- 221 (547)
T ss_pred CC--cHHHHHHHHHHHHHHHHCCCe---EEEECCCCCCcH-HHHHHHHHHHhccCCCHHHHHHHHHHHCCCCC-------
Confidence 66 789999999999999888776 999999999996 99999999998766677889999965544321
Q ss_pred CCCchHHHHHHHHHHh
Q 001565 175 NPFPSQLRYLQYVARR 190 (1052)
Q Consensus 175 n~~PSQ~RYV~Yf~~l 190 (1052)
..+.|+|+++.|.+.
T Consensus 222 -~n~~q~~~l~~~~~~ 236 (547)
T PRK12361 222 -LNKRQLRALEKMLEQ 236 (547)
T ss_pred -CCHHHHHHHHHHHHc
Confidence 457999999877653
No 20
>PHA03247 large tegument protein UL36; Provisional
Probab=98.77 E-value=9.7e-05 Score=98.03 Aligned_cols=9 Identities=11% Similarity=-0.138 Sum_probs=4.3
Q ss_pred HHHHHHHhh
Q 001565 45 HEILTELHE 53 (1052)
Q Consensus 45 ~dV~~~L~~ 53 (1052)
..|..||+.
T Consensus 1914 ~RvaA~mr~ 1922 (3151)
T PHA03247 1914 RRGEAYLRA 1922 (3151)
T ss_pred HHHHHHHhh
Confidence 445555543
No 21
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.73 E-value=8.9e-08 Score=89.44 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=64.4
Q ss_pred eCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCc-----cHHHHHHHHHH
Q 001565 87 DYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHS-----GERRTLEIVHR 161 (1052)
Q Consensus 87 ~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~-----~~~~Al~~~~k 161 (1052)
...|.|++.|. ..+.+++|++.++.|......++-|+|||.+|+||+ |+++|+||++.+... ...+++..+..
T Consensus 7 ~~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 7 YTGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred eCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 34778888873 348999999999999886543367999999999997 999999999887543 33445555543
Q ss_pred hcCccccccCCCCCCCchHHHHHHHH
Q 001565 162 EAPKGFLQLLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 162 ~~~~~~~~~~s~~n~~PSQ~RYV~Yf 187 (1052)
++...+ ....|.+|++..
T Consensus 85 ~r~~~~--------~~~~q~~~~~~~ 102 (105)
T smart00012 85 QRPGMV--------QTFEQYLFLYRA 102 (105)
T ss_pred hhhhhC--------CcHHHHHHHHHH
Confidence 332221 466677766543
No 22
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.73 E-value=8.9e-08 Score=89.44 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=64.4
Q ss_pred eCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCc-----cHHHHHHHHHH
Q 001565 87 DYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHS-----GERRTLEIVHR 161 (1052)
Q Consensus 87 ~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~-----~~~~Al~~~~k 161 (1052)
...|.|++.|. ..+.+++|++.++.|......++-|+|||.+|+||+ |+++|+||++.+... ...+++..+..
T Consensus 7 ~~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 7 YTGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred eCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 34778888873 348999999999999886543367999999999997 999999999887543 33445555543
Q ss_pred hcCccccccCCCCCCCchHHHHHHHH
Q 001565 162 EAPKGFLQLLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 162 ~~~~~~~~~~s~~n~~PSQ~RYV~Yf 187 (1052)
++...+ ....|.+|++..
T Consensus 85 ~r~~~~--------~~~~q~~~~~~~ 102 (105)
T smart00404 85 QRPGMV--------QTFEQYLFLYRA 102 (105)
T ss_pred hhhhhC--------CcHHHHHHHHHH
Confidence 332221 466677766543
No 23
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=6.1e-07 Score=106.91 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=4.9
Q ss_pred cCCCcccccc
Q 001565 921 MQGSLWADSQ 930 (1052)
Q Consensus 921 i~gTiW~~~~ 930 (1052)
++.--|.++.
T Consensus 626 Mrr~nW~kI~ 635 (1102)
T KOG1924|consen 626 MRRFNWSKIV 635 (1102)
T ss_pred cccCCccccC
Confidence 3444455554
No 24
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.27 E-value=2.6e-05 Score=76.24 Aligned_cols=147 Identities=17% Similarity=0.209 Sum_probs=96.7
Q ss_pred CCCCCceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCC
Q 001565 10 KRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYP 89 (1052)
Q Consensus 10 rk~~LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP 89 (1052)
|-.+..++|=-=|.++.+ =|+. .....+|+|+ ++|+ --.|...|+-.|+.. .+.+-+..|+|++
T Consensus 6 rPAPveIsy~~MrFLITh--nPtn----aTln~fieEL-----kKyg--vttvVRVCe~TYdt~---~lek~GI~Vldw~ 69 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITH--NPTN----ATLNKFIEEL-----KKYG--VTTVVRVCEPTYDTT---PLEKEGITVLDWP 69 (173)
T ss_pred CCCCeeeeccceEEEEec--CCCc----hhHHHHHHHH-----HhcC--CeEEEEecccccCCc---hhhhcCceEeecc
Confidence 445567777777777773 4553 2333445444 2344 356788899887642 3456678999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccc
Q 001565 90 RQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQ 169 (1052)
Q Consensus 90 ~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~ 169 (1052)
|+|...| +-+.+-....-+..-+.+.+. -.|+|||-+|-||. -+++|--||-+|+ .-|+|++|+..+++..|
T Consensus 70 f~dg~pp--p~qvv~~w~~l~~~~f~e~p~-~cvavhcvaglgra-pvlvalalie~gm--kyedave~ir~krrga~-- 141 (173)
T KOG2836|consen 70 FDDGAPP--PNQVVDDWLSLVKTKFREEPG-CCVAVHCVAGLGRA-PVLVALALIEAGM--KYEDAVEMIRQKRRGAI-- 141 (173)
T ss_pred cccCCCC--chHHHHHHHHHHHHHHhhCCC-CeEEEEeecccCcc-hHHHHHHHHHccc--cHHHHHHHHHHHhhccc--
Confidence 9995444 445544444444444556777 78999999999996 7888888888875 45779999964332222
Q ss_pred cCCCCCCCchHHHHHHHH
Q 001565 170 LLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 170 ~~s~~n~~PSQ~RYV~Yf 187 (1052)
---|+-||.-|
T Consensus 142 -------n~kql~~leky 152 (173)
T KOG2836|consen 142 -------NSKQLLYLEKY 152 (173)
T ss_pred -------cHHHHHHHHHh
Confidence 23477777644
No 25
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.20 E-value=5.5e-06 Score=89.64 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=66.2
Q ss_pred EEeeC-CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcC----CccHHHHHHH
Q 001565 84 TVLDY-PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL----HSGERRTLEI 158 (1052)
Q Consensus 84 ~V~~y-P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~----~~~~~~Al~~ 158 (1052)
.+.+| .|.|++.|. ..+.+++|++.++.+...+.. +-|+|||.+|.||+ |+++|++++.... .-...+++..
T Consensus 131 ~~~~~~~W~d~~~p~-~~~~~~~~~~~v~~~~~~~~~-~pivVHC~~G~gRs-g~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 131 THFQYTGWPDHGVPE-SPDSLLDLLRKVRKSQQQPGS-GPIVVHCSAGVGRT-GTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred EEEeECCCCCCCccC-ChHHHHHHHHHHHHHhccCCC-CCeEEECCCCCCcc-chHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34444 488888873 458899999999988754444 67999999999997 9999988876542 3344557776
Q ss_pred HHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565 159 VHREAPKGFLQLLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 159 ~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf 187 (1052)
+.+++..- + ....|.+|++..
T Consensus 208 iR~~R~~~----v----~~~~Qy~f~~~~ 228 (231)
T cd00047 208 LRSQRPGM----V----QTEEQYIFLYRA 228 (231)
T ss_pred HHhccccc----c----CCHHHHHHHHHH
Confidence 64433222 1 578899998865
No 26
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.11 E-value=1.5e-05 Score=93.51 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=63.9
Q ss_pred cEEeeC-CCCCCCCCCChHHHHHHHHHHHHHHHhhCC------CccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHH
Q 001565 83 VTVLDY-PRQYEGCPLLPMSLIQHFLRVCEHWLLLGD------HQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRT 155 (1052)
Q Consensus 83 ~~V~~y-P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~------~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~A 155 (1052)
+.+++| -|.|||+| ..-+.|++|.+.++.|-..+. +....||||.||-||| |++|||+++......+-++.
T Consensus 423 V~QFHyTnWPDHGVP-pST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRT-GTFIAi~llk~~~~~sle~I 500 (535)
T PRK15375 423 IPVLHVKNWPDHQPL-PSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRT-GTMAAALVLKDNPHSNLEQV 500 (535)
T ss_pred EEEEEeCCCCCCCCC-CChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchH-HHHHHHHHHhccccCCHHHH
Confidence 345555 78999987 345668889888887743221 1024589999999998 99999999875555566667
Q ss_pred HHHHHHhcCccccccCCCCCCCchHHHHHHHHH
Q 001565 156 LEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVA 188 (1052)
Q Consensus 156 l~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~ 188 (1052)
+..+..++.. ..| ...-|.-.+.-+.
T Consensus 501 V~dlR~qRng---~MV----Qt~eQy~~l~~~~ 526 (535)
T PRK15375 501 RADFRNSRNN---RML----EDASQFVQLKAMQ 526 (535)
T ss_pred HHHHHhcCCc---ccc----ccHHHHHHHHHHH
Confidence 7766433221 123 4666665555443
No 27
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.07 E-value=2.1e-05 Score=86.74 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=63.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcC----CccHHHHHHHHHHhcC
Q 001565 89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL----HSGERRTLEIVHREAP 164 (1052)
Q Consensus 89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~----~~~~~~Al~~~~k~~~ 164 (1052)
.|.|++.|. ..+.+++|++.++.+.... . +-|+|||.+|.||+ |+++|+++++..+ .-...+++..+.+++.
T Consensus 165 ~W~d~~~P~-~~~~~~~~i~~v~~~~~~~-~-~pivVHC~~G~gRs-g~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~ 240 (258)
T smart00194 165 NWPDHGVPE-SPKSILDLVRAVRKSQSTS-T-GPIVVHCSAGVGRT-GTFIAIDILLQQLEAGKEVDIFEIVKELRSQRP 240 (258)
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHhhccC-C-CCEEEEeCCCCCcc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHhccc
Confidence 688888873 6788999999999987642 2 56999999999998 9999998876542 2334556766644332
Q ss_pred ccccccCCCCCCCchHHHHHHHH
Q 001565 165 KGFLQLLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 165 ~~~~~~~s~~n~~PSQ~RYV~Yf 187 (1052)
.- +...-|.+|++..
T Consensus 241 ~~--------v~~~~Qy~f~~~~ 255 (258)
T smart00194 241 GM--------VQTEEQYIFLYRA 255 (258)
T ss_pred cc--------cCCHHHHHHHHHH
Confidence 22 2678898888653
No 28
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.94 E-value=2.9e-05 Score=83.28 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=65.4
Q ss_pred EEeeC-CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCc----cHHHHHHH
Q 001565 84 TVLDY-PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHS----GERRTLEI 158 (1052)
Q Consensus 84 ~V~~y-P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~----~~~~Al~~ 158 (1052)
.+.+| .|.+++.| ...+.++.|++.+..|. .+.. +-++|||.+|.||+ |+++|+.+++..+.. +-.+++..
T Consensus 136 ~~~~~~~W~~~~~P-~~~~~~~~~~~~v~~~~-~~~~-~pivVhc~~G~gRs-g~f~~~~~~~~~~~~~~~~~v~~~~~~ 211 (235)
T PF00102_consen 136 THFHYTNWPDDGVP-PSPESFLDFIRKVNKSK-DDPN-GPIVVHCSDGVGRS-GTFCAIDILIEQLKKEGEVDVFEIVKK 211 (235)
T ss_dssp EEEEEESSSSSSSG-SSSHHHHHHHHHHHHHH-STTS-SEEEEESSSSSHHH-HHHHHHHHHHHHHHHHSEECHHHHHHH
T ss_pred cceeeeeccccccc-cccchhhhhhhhccccc-cCCc-cceEeecccccccc-cccccchhhccccccccchhhHHHHHH
Confidence 44444 88888887 46899999999999998 3444 78999999999997 999998888776543 33445554
Q ss_pred HHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565 159 VHREAPKGFLQLLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 159 ~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf 187 (1052)
+.+++. +......|.+|+++.
T Consensus 212 lR~~R~--------~~i~~~~qy~f~~~~ 232 (235)
T PF00102_consen 212 LRQQRP--------GAIQSPEQYRFCYMA 232 (235)
T ss_dssp HHTTST--------TSSSSHHHHHHHHHH
T ss_pred HHhhCC--------CccCCHHHHHHHHHH
Confidence 433222 122577787777764
No 29
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.80 E-value=3.2e-05 Score=88.09 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=72.3
Q ss_pred cEEEEeecCCCccchhhhhhcccCc----------EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEE
Q 001565 59 AFLAFNFREGEKQSEFAEILCEYDV----------TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILL 125 (1052)
Q Consensus 59 ~y~V~NLs~~~~~s~~~~~~s~f~~----------~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvV 125 (1052)
++.|=|..++... .|.+.+|.+ .|.+| -|.|||||+ .-.-+++|+.+++.=-..=...--|||
T Consensus 381 ~~~v~~v~E~~t~---dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~-dPg~vLnFLe~V~~rq~~l~~AgpIvV 456 (600)
T KOG0790|consen 381 VMRVRNVKESDTH---DYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPS-DPGGVLNFLEEVNHRQESLMDAGPIVV 456 (600)
T ss_pred ceEEEeccccccc---cceehheeeccccCCcchhhhhhhheeecccCCCcC-CccHHHHHHHHhhhhhccccccCcEEE
Confidence 5889898876432 122333221 24444 689999994 667888899998743221111124999
Q ss_pred EecCCCcchHHHHHH--HHH--HHhcCCc---cHHHHHHHHHHhcCccccccCCCCCCCchHHHHHHHHH
Q 001565 126 HSERGGWPLLAFLLA--SLL--IFRKLHS---GERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVA 188 (1052)
Q Consensus 126 HCk~GkgRt~g~mia--~yL--ly~~~~~---~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~ 188 (1052)
||.||-||| |++|. ++| |-.+... ...++++|+..+ +||++.+=.|-|||+|--
T Consensus 457 HCSAGIGrT-GTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsq--------RSGmVQTEaQYkFiY~Av 517 (600)
T KOG0790|consen 457 HCSAGIGRT-GTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQ--------RSGMVQTEAQYKFIYVAV 517 (600)
T ss_pred EccCCcCCc-ceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHH--------hcchhhhHHhHHHHHHHH
Confidence 999999998 87655 333 2222232 246677777432 244557788999998753
No 30
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=97.78 E-value=0.00011 Score=76.11 Aligned_cols=123 Identities=14% Similarity=0.134 Sum_probs=61.4
Q ss_pred HHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCC--CChHHHHHHHHHHHHHHHhhCCCccEEE
Q 001565 47 ILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCP--LLPMSLIQHFLRVCEHWLLLGDHQNVIL 124 (1052)
Q Consensus 47 V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P--~p~L~~L~~~c~~~~~WL~~d~~~NVvv 124 (1052)
-..||++.+=. .|.||+.+....++..-....+.++.+++......+ ...-+.+.++++.| | |..+.=|+
T Consensus 24 n~~fL~~L~LK---TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i---l--d~~n~PvL 95 (164)
T PF03162_consen 24 NFPFLERLGLK---TIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII---L--DPRNYPVL 95 (164)
T ss_dssp HHHHHHHHT-S---EEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH---H---GGG-SEE
T ss_pred hHHHHHHCCCc---eEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH---h--CCCCCCEE
Confidence 35688886544 488999876543332223456778888866544321 01344454444433 2 22224589
Q ss_pred EEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCCCCCchHHHHHHHHHH
Q 001565 125 LHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVAR 189 (1052)
Q Consensus 125 VHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~~ 189 (1052)
|||+.|+-|| |+|||||=.+. .|+- ..+++.|.+++..+. .-.-++||+.|..
T Consensus 96 iHC~~G~~rT-G~vvg~lRk~Q-~W~~-~~i~~Ey~~f~~~~~---------~~~~~~fIe~f~~ 148 (164)
T PF03162_consen 96 IHCNHGKDRT-GLVVGCLRKLQ-GWSL-SSIFDEYRRFAGPKI---------RYLDEQFIELFDV 148 (164)
T ss_dssp EE-SSSSSHH-HHHHHHHHHHT-TB-H-HHHHHHHHHHHGGG-----------HHHHHHHHT---
T ss_pred EEeCCCCcch-hhHHHHHHHHc-CCCH-HHHHHHHHHhcCCCC---------cHHHHHHHHhcCc
Confidence 9999999998 99999997543 4544 448888866544321 3345677877764
No 31
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.72 E-value=0.0008 Score=78.10 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=4.0
Q ss_pred hhhhhhhhh
Q 001565 976 VQLVELRRA 984 (1052)
Q Consensus 976 vslLD~KRa 984 (1052)
-++||.+++
T Consensus 538 ~~~m~ara~ 546 (569)
T KOG3671|consen 538 ANLMDARAS 546 (569)
T ss_pred HHHHHHHHH
Confidence 345554433
No 32
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.59 E-value=0.00018 Score=82.95 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=86.1
Q ss_pred CCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC-CCCChHHHHHHHH
Q 001565 29 CFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG-CPLLPMSLIQHFL 107 (1052)
Q Consensus 29 ~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g-~P~p~L~~L~~~c 107 (1052)
+|..... ++.+|-.-.+|...|.++--- =-++..|..-..++ ...++.+.+...+.--+..|+ +| ..+.+..|.
T Consensus 36 ~~~~k~~-~~~~~f~~~dl~~~l~~~~~~-vgl~iDltnt~ryy-~~~~~~~~g~~Y~K~~c~g~~~vp--~~~~v~~fv 110 (393)
T KOG2386|consen 36 SYSTKTF-PGSQRFQPKDLFELLKEHNYK-VGLKIDLTNTLRYY-DKPELEERGVKYLKRNCPGRGVVP--RTELVDKFV 110 (393)
T ss_pred CCCcCCC-CCccccCHHHHHHHHHhcCce-EEEEEeccceeeee-ccccccccceeEEEeccCCcccCC--CccchHHHH
Confidence 6766555 555588899999999886321 12233333211111 111122222222221222333 54 899999999
Q ss_pred HHHHHHHh--hCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccc
Q 001565 108 RVCEHWLL--LGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGF 167 (1052)
Q Consensus 108 ~~~~~WL~--~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~ 167 (1052)
+.++.+.. ++.. -+|.|||..|+-|| |+|||+||+-.+.++ ..+|+.+|++.+..++
T Consensus 111 ~~v~~f~~~~~~~~-~LI~vhcthG~Nrt-gyLI~~yL~~~~~~s-~~~aik~f~~~r~~gi 169 (393)
T KOG2386|consen 111 KLVKGFVDDTKLDD-ELIGVHCTHGLNRT-GYLICAYLADVGGYS-SSEAIKRFADARPPGI 169 (393)
T ss_pred HHHHHHHhcccCCC-CEEEEeCCCccccc-ceeeeeeeeeccCcc-HHHHHHHHHHhCCCcc
Confidence 99999999 6666 79999999999997 999999999999854 4559999987665554
No 33
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.54 E-value=0.00028 Score=88.06 Aligned_cols=89 Identities=18% Similarity=0.095 Sum_probs=59.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhh-CCCccEEEEEecCCCcchHHHHHHHHHHHh-cCCccHHHHHHHHHHhcCcc
Q 001565 89 PRQYEGCPLLPMSLIQHFLRVCEHWLLL-GDHQNVILLHSERGGWPLLAFLLASLLIFR-KLHSGERRTLEIVHREAPKG 166 (1052)
Q Consensus 89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~-d~~~NVvvVHCk~GkgRt~g~mia~yLly~-~~~~~~~~Al~~~~k~~~~~ 166 (1052)
-|.|||||- ..+..+.|+..|.+-=.. ++ =|||||.||.||| |++|++=++.+ -.....-+-++++...+-.|
T Consensus 1035 aWPDHg~P~-D~~~FL~FleevrsvR~~t~p---PilvHCSAGiGRT-GVlIl~e~~l~lle~Ne~vdi~divr~mR~QR 1109 (1144)
T KOG0792|consen 1035 AWPDHGVPD-DPNDFLDFLEEVRSVRRGTNP---PILVHCSAGIGRT-GVLILMETALCLLEHNEPVDILDIVRTMRDQR 1109 (1144)
T ss_pred ccccCCCCC-ChHHHHHHHHHHHHHhccCCC---CeEEEccCCCCcc-eehHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 689999994 888999999988764333 33 4999999999998 99998654333 33333344556653211111
Q ss_pred ccccCCCCCCCchHHHHHHHH
Q 001565 167 FLQLLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 167 ~~~~~s~~n~~PSQ~RYV~Yf 187 (1052)
...+.+.+|-+||+-.
T Consensus 1110 -----~~mVQT~~QYkFVyev 1125 (1144)
T KOG0792|consen 1110 -----AMMVQTLSQYKFVYEV 1125 (1144)
T ss_pred -----hhhccchHHhhHHHHH
Confidence 1223688999998743
No 34
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.47 E-value=0.0015 Score=73.63 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHh
Q 001565 103 IQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHRE 162 (1052)
Q Consensus 103 L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~ 162 (1052)
+-+.++.|+.-+..+. .|+|||.+|..|+ ++++.||||+...++-.+ |++++..+
T Consensus 141 ~~~~~~fI~~a~~~~~---~vlVHC~~GvSRS-at~viAYlM~~~~~~l~~-A~~~vk~~ 195 (285)
T KOG1716|consen 141 FPEAISFIEKAREKGG---KVLVHCQAGVSRS-ATLVIAYLMKYEGLSLED-AYELVKSR 195 (285)
T ss_pred HHHHHHHHHHHHhCCC---eEEEEcCCccchh-HHHHHHHHHHHcCCCHHH-HHHHHHHh
Confidence 4444444544444444 4999999999996 899999999998886655 99999644
No 35
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.26 E-value=0.00093 Score=75.86 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=54.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhC-----CC----ccEEEEEecCCCcchHHHHHHHHHHHhcCC-c---cHHHH
Q 001565 89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLG-----DH----QNVILLHSERGGWPLLAFLLASLLIFRKLH-S---GERRT 155 (1052)
Q Consensus 89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d-----~~----~NVvvVHCk~GkgRt~g~mia~yLly~~~~-~---~~~~A 155 (1052)
.|.|||+|. ....+++|++.+..|-... .+ ..=+||||.+|.||| |+.+|...+....- . .-.++
T Consensus 190 ~Wpd~gvP~-~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-GtF~aid~~i~~~~~~~~v~v~~~ 267 (303)
T PHA02742 190 DWPHGGLPR-DPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRA-GAFCAIDICISKYNERAIIPLLSI 267 (303)
T ss_pred CCCCCCcCC-CHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchh-HHHHHHHHHHHHHHhcCCCCHHHH
Confidence 889999983 6678888998888764221 00 024899999999998 88877555443321 1 11234
Q ss_pred HHHHHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565 156 LEIVHREAPKGFLQLLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 156 l~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf 187 (1052)
+..+.+++.. .+...-|-.|++..
T Consensus 268 V~~lR~qR~~--------~Vqt~~QY~F~y~~ 291 (303)
T PHA02742 268 VRDLRKQRHN--------CLSLPQQYIFCYFI 291 (303)
T ss_pred HHHHHhhccc--------ccCCHHHHHHHHHH
Confidence 4444322211 12567787776653
No 36
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.26 E-value=0.0013 Score=75.09 Aligned_cols=91 Identities=10% Similarity=0.049 Sum_probs=54.9
Q ss_pred EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHhhCCC--------ccEEEEEecCCCcchHHHHHHHHHHHhcC----
Q 001565 84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDH--------QNVILLHSERGGWPLLAFLLASLLIFRKL---- 148 (1052)
Q Consensus 84 ~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~--------~NVvvVHCk~GkgRt~g~mia~yLly~~~---- 148 (1052)
.|.+| .|.|+|.|. ....+++|++.+..|-..-.+ ..=+||||.+|-||| |+.+|..++...+
T Consensus 183 ~V~h~~y~~Wpd~~~P~-~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRt-Gtfcaidi~i~~l~~~~ 260 (312)
T PHA02747 183 KISHFQCSEWFEDETPS-DHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKT-GIFCAVDICLNQLVKRK 260 (312)
T ss_pred EEEEEEECCCCCCCCCC-ChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcch-hHHHHHHHHHHHHHhcC
Confidence 46665 888999883 466677788777666432111 024899999999998 8887765443322
Q ss_pred CccHHHHHHHHHHhcCccccccCCCCCCCchHHHHH
Q 001565 149 HSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYL 184 (1052)
Q Consensus 149 ~~~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV 184 (1052)
.-...+++..+.+++.. .+...-|-.|+
T Consensus 261 ~v~v~~~V~~lR~qR~~--------~Vqt~~QY~F~ 288 (312)
T PHA02747 261 AICLAKTAEKIREQRHA--------GIMNFDDYLFI 288 (312)
T ss_pred CCCHHHHHHHHHhcccc--------ccCCHHHHHHH
Confidence 11223344444322221 12577888888
No 37
>PLN02727 NAD kinase
Probab=97.24 E-value=0.00096 Score=83.43 Aligned_cols=98 Identities=13% Similarity=0.233 Sum_probs=66.7
Q ss_pred ccc-c--cHHHHHHHHhhhCCCCcEEEEeecCCCccch-----hhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHHH
Q 001565 39 MYQ-L--YLHEILTELHEEFPDSAFLAFNFREGEKQSE-----FAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVC 110 (1052)
Q Consensus 39 ~YR-N--~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~-----~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~ 110 (1052)
.|| + .-+++..+.+.=+ =.|.||+.+....+ +.......+++++++|..+.+.| +.+.|.+|.+.+
T Consensus 263 ~~rsgQpspe~la~LA~~Gf----KTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap--t~EqVe~fa~~l 336 (986)
T PLN02727 263 FWRGGQVTEEGLKWLLEKGF----KTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP--SAEQVEKFASLV 336 (986)
T ss_pred EEEeCCCCHHHHHHHHHCCC----eEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC--CHHHHHHHHHHH
Confidence 466 2 3455655444322 34899986544211 11122346789999998776665 789999888777
Q ss_pred HHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcC
Q 001565 111 EHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL 148 (1052)
Q Consensus 111 ~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~ 148 (1052)
++ ....- |+|||+.|.+|+ |+|+||||.|.-.
T Consensus 337 ~~--slpkP---VLvHCKSGarRA-GamvA~yl~~~~~ 368 (986)
T PLN02727 337 SD--SSKKP---IYLHSKEGVWRT-SAMVSRWKQYMTR 368 (986)
T ss_pred Hh--hcCCC---EEEECCCCCchH-HHHHHHHHHHHcc
Confidence 44 23334 999999999997 9999999999754
No 38
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.16 E-value=0.0025 Score=73.05 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=42.1
Q ss_pred EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHhh-------CC-CccEEEEEecCCCcchHHHHHHHHHH
Q 001565 84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLL-------GD-HQNVILLHSERGGWPLLAFLLASLLI 144 (1052)
Q Consensus 84 ~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~~-------d~-~~NVvvVHCk~GkgRt~g~mia~yLl 144 (1052)
.|.+| -|.|||.|. ....+++|++.+..|-.. +. ...=+||||.+|.||| |+.+|...+
T Consensus 201 ~V~h~~y~~Wpd~gvP~-~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-Gtfcaid~~ 270 (323)
T PHA02746 201 EIHHFWFPDWPDNGIPT-GMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRA-GTFCAIDNA 270 (323)
T ss_pred EEEEEEECCCCCCCcCC-CHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcc-hhHHHHHHH
Confidence 45554 888999883 577888898888877431 11 1135899999999998 888775443
No 39
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.07 E-value=0.00054 Score=69.85 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=38.1
Q ss_pred cccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHH
Q 001565 79 CEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLI 144 (1052)
Q Consensus 79 s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLl 144 (1052)
..++....++|..||.+| .-+.+-.|+..+.+. -. . --+++||.+|+|||..+|+.+.|+
T Consensus 89 ~~~g~~Y~Ripitd~~~P--~~~~iD~fi~~v~~~-p~--~-~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 89 EGNGLRYYRIPITDHQAP--DPEDIDAFINFVKSL-PK--D-TWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHTT-EEEEEEE-TTS-----HHHHHHHHHHHHTS--T--T--EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCcCCC--CHHHHHHHHHHHHhC-CC--C-CeEEEECCCCCCHHHHHHHHHHHh
Confidence 456778888899999998 456666666555554 22 2 569999999999987777666665
No 40
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.04 E-value=0.02 Score=66.99 Aligned_cols=8 Identities=25% Similarity=0.127 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 001565 137 FLLASLLI 144 (1052)
Q Consensus 137 ~mia~yLl 144 (1052)
.++.+.||
T Consensus 14 ~n~~S~lL 21 (569)
T KOG3671|consen 14 PNVPSTLL 21 (569)
T ss_pred CCCccccc
Confidence 44444443
No 41
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.03 E-value=0.0012 Score=74.83 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=65.8
Q ss_pred cccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHH-HHHhcCCccHHHHHH
Q 001565 79 CEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASL-LIFRKLHSGERRTLE 157 (1052)
Q Consensus 79 s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~y-Lly~~~~~~~~~Al~ 157 (1052)
+++-..+..+-|.|||.| .+...|.+|.+....|+..+. -.++|||.+|-||| ||.||-- |+|.-......+-..
T Consensus 249 sr~ir~f~y~~wPd~gvp-~~~~sl~~f~~~~r~~~~~~~--~p~iVhCSAGVgRT-GTFiald~LLqq~~~~~~vdi~~ 324 (374)
T KOG0791|consen 249 SRKIRHFHYTAWPDFGVP-SSTESLLQFVRMVRQSLDTSK--GPTIVHCSAGVGRT-GTFIALDRLLQQIDSEETVDIFG 324 (374)
T ss_pred cceeEEEEEeeccccCCC-CCchhHHHHHHHHHhhcccCC--CceeEEeecccccc-cchHhHHHHHHHhcccccccHHH
Confidence 344445666799999999 578999999999999999984 58999999999998 8888754 455443333333334
Q ss_pred HHHHhcCccccccCCCCCCCchHHHHHHH
Q 001565 158 IVHREAPKGFLQLLSPLNPFPSQLRYLQY 186 (1052)
Q Consensus 158 ~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Y 186 (1052)
.+...+..|. +.| ..=-|.=||++
T Consensus 325 iv~~lR~~R~-~mV----qte~Qyvfl~~ 348 (374)
T KOG0791|consen 325 VVLELRSARM-LMV----QTEDQYVFLHQ 348 (374)
T ss_pred HHHHhhhccc-ccc----chHHHHHHHHH
Confidence 4443333331 233 33345555544
No 42
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=96.96 E-value=0.003 Score=71.59 Aligned_cols=93 Identities=10% Similarity=0.059 Sum_probs=55.0
Q ss_pred EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHh-------hCCCccEEEEEecCCCcchHHHHHHHHHHHhcCC-ccH
Q 001565 84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLL-------LGDHQNVILLHSERGGWPLLAFLLASLLIFRKLH-SGE 152 (1052)
Q Consensus 84 ~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~-------~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~-~~~ 152 (1052)
.|.+| -|.|||.|. ....+++|++.+..+.. .+.. .=+||||.+|-||| |+.+|...+-..+. .+.
T Consensus 177 ~V~Hfqyt~WPd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~-~PIVVHCSaGvGRT-GtFcaiDi~l~~~~~~~~ 253 (298)
T PHA02740 177 KISHFQYTAWPADGFSH-DPDAFIDFFCNIDDLCADLEKHKADGKI-APIIIDCIDGISSS-AVFCVFDICATEFDKTGM 253 (298)
T ss_pred EEEEEeecCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHhhccCCC-CCEEEECCCCCchh-HHHHHHHHHHHHHHhcCc
Confidence 46665 788999884 56777888777765431 1112 35899999999998 88877554433221 111
Q ss_pred ---HHHHHHHHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565 153 ---RRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 153 ---~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf 187 (1052)
.+++..+.++ | -+.+....|-.|++..
T Consensus 254 vdi~~~V~~lR~q---R-----~~~Vqt~~QY~F~y~~ 283 (298)
T PHA02740 254 LSIANALKKVRQK---K-----YGCMNCLDDYVFCYHL 283 (298)
T ss_pred ccHHHHHHHHHhh---C-----ccccCCHHHHHHHHHH
Confidence 2233333222 2 1222578888877653
No 43
>PHA02738 hypothetical protein; Provisional
Probab=96.95 E-value=0.0029 Score=72.37 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=55.9
Q ss_pred EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHhh-------CCC----ccEEEEEecCCCcchHHHHHHHHHHHhcCC
Q 001565 84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLL-------GDH----QNVILLHSERGGWPLLAFLLASLLIFRKLH 149 (1052)
Q Consensus 84 ~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~~-------d~~----~NVvvVHCk~GkgRt~g~mia~yLly~~~~ 149 (1052)
.|.+| .|.|+|+|. ....+++|++.+..+-.. ... ..=+||||.+|.||| |+.+|.-.+...+-
T Consensus 178 ~V~h~~y~~Wpd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRt-GtFcaidi~i~~~~ 255 (320)
T PHA02738 178 TVTHFNFTAWPDHDVPK-NTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRT-PCYCVVDISISRFD 255 (320)
T ss_pred EEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChh-hhhhHHHHHHHHHH
Confidence 35554 788899883 566788888888765321 111 024899999999998 88766554433321
Q ss_pred -c---cHHHHHHHHHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565 150 -S---GERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYV 187 (1052)
Q Consensus 150 -~---~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf 187 (1052)
. .-.+++..+.+++. +.+....|-.|++..
T Consensus 256 ~~~~vdv~~~V~~lR~qR~--------~~vqt~~QY~F~y~~ 289 (320)
T PHA02738 256 ACATVSIPSIVSSIRNQRY--------YSLFIPFQYFFCYRA 289 (320)
T ss_pred hcCCcCHHHHHHHHHhhhh--------hccCCHHHHHHHHHH
Confidence 1 12223443332221 122578888887654
No 44
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.93 E-value=0.0078 Score=60.34 Aligned_cols=115 Identities=12% Similarity=-0.008 Sum_probs=66.1
Q ss_pred ceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCcc-chh-h----hhhcccCcEEeeC
Q 001565 15 GLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQ-SEF-A----EILCEYDVTVLDY 88 (1052)
Q Consensus 15 DLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~-s~~-~----~~~s~f~~~V~~y 88 (1052)
|+.-|++++++. +=++ -+|+ ..|.+.. ==.|+||+..... .+- . ......++.++++
T Consensus 1 ~~~~i~~~~~~s--~qlt-----------~~d~-~~L~~~G---iktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~i 63 (135)
T TIGR01244 1 DIRKLTEHLYVS--PQLT-----------KADA-AQAAQLG---FKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQ 63 (135)
T ss_pred CceEcCCCeeEc--CCCC-----------HHHH-HHHHHCC---CcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEe
Confidence 345677887777 2222 2233 3454432 2468999743211 110 0 0112357788888
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHH
Q 001565 89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIV 159 (1052)
Q Consensus 89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~ 159 (1052)
|....+. +-+.+..|.+.++ ..+.- |++||+.|+ |+ |++.+-++.+.| + ..+++++..
T Consensus 64 Pv~~~~~---~~~~v~~f~~~~~---~~~~p---vL~HC~sG~-Rt-~~l~al~~~~~g-~-~~~~i~~~~ 121 (135)
T TIGR01244 64 PVTAGDI---TPDDVETFRAAIG---AAEGP---VLAYCRSGT-RS-SLLWGFRQAAEG-V-PVEEIVRRA 121 (135)
T ss_pred ecCCCCC---CHHHHHHHHHHHH---hCCCC---EEEEcCCCh-HH-HHHHHHHHHHcC-C-CHHHHHHHH
Confidence 7765432 5667777766665 23333 999999999 96 777666666655 3 455577765
No 45
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.69 E-value=0.082 Score=54.41 Aligned_cols=117 Identities=11% Similarity=0.006 Sum_probs=66.8
Q ss_pred CceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCC
Q 001565 14 DGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYE 93 (1052)
Q Consensus 14 LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~ 93 (1052)
-.|+.||+-++... |--+ +.+.|-++++- -+|.|.+-|.-. ....+ .+.+..+.+|+
T Consensus 15 ~~~SqIt~sLfl~~-GvaA--------------~~k~~l~~~~I--t~IiNat~E~pn-~~l~~-----~qy~kv~~~D~ 71 (198)
T KOG1718|consen 15 GGMSQITPSLFLSN-GVAA--------------NDKLLLKKRKI--TCIINATTEVPN-TSLPD-----IQYMKVPLEDT 71 (198)
T ss_pred cchhhcCcceeEec-cccc--------------cCHHHHHhcCc--eEEEEcccCCCC-ccCCC-----ceeEEEEcccC
Confidence 46889999988773 2221 12233344543 689998876543 11112 23334445554
Q ss_pred CCCCChHHHHH-HHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHH
Q 001565 94 GCPLLPMSLIQ-HFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVH 160 (1052)
Q Consensus 94 g~P~p~L~~L~-~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~ 160 (1052)
-- -.|..-+ .+-..|++--..+.+ .+|||.||-.|. |.++-||||..... +-.||-.++.
T Consensus 72 p~--~~l~~hfD~vAD~I~~v~~~gG~---TLvHC~AGVSRS-AsLClAYLmK~~~m-sLreAy~~vK 132 (198)
T KOG1718|consen 72 PQ--ARLYDHFDPVADKIHSVIMRGGK---TLVHCVAGVSRS-ASLCLAYLMKYHCM-SLREAYHWVK 132 (198)
T ss_pred Cc--chhhhhhhHHHHHHHHHHhcCCc---EEEEEccccchh-HHHHHHHHHHHccc-hHHHHHHHHH
Confidence 11 1222222 222334444455666 899999999996 88888998876543 4455777773
No 46
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.62 E-value=0.027 Score=61.42 Aligned_cols=72 Identities=10% Similarity=0.030 Sum_probs=48.1
Q ss_pred EEeeCCCCCCCCCCChHHH-HHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHh
Q 001565 84 TVLDYPRQYEGCPLLPMSL-IQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHRE 162 (1052)
Q Consensus 84 ~V~~yP~~d~g~P~p~L~~-L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~ 162 (1052)
+...++..||-.- .|.. +-+.+..|++-.+++-. |+|||.+|-.|. .|+..+|||..-.+ +-.+|.+++.++
T Consensus 219 ~YkqipisDh~Sq--nls~ffpEAIsfIdeArsk~cg---vLVHClaGISRS-vTvtvaYLMqkl~l-slndAyd~Vk~k 291 (343)
T KOG1717|consen 219 IYKQIPISDHASQ--NLSQFFPEAISFIDEARSKNCG---VLVHCLAGISRS-VTVTVAYLMQKLNL-SLNDAYDFVKHK 291 (343)
T ss_pred eEEeeeccchhhh--hhhhhhHHHHHHHHHhhccCCc---EEEeeeccccch-hHHHHHHHHHHhcc-chhhHHHHHHHh
Confidence 3556788887332 2322 22344444444444444 999999999996 89999999977665 445699999643
No 47
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.61 E-value=0.017 Score=63.21 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhC-CCccEEEEEecCCCcchHHHHHHHHHHHh
Q 001565 103 IQHFLRVCEHWLLLG-DHQNVILLHSERGGWPLLAFLLASLLIFR 146 (1052)
Q Consensus 103 L~~~c~~~~~WL~~d-~~~NVvvVHCk~GkgRt~g~mia~yLly~ 146 (1052)
|.++|+.++.....- .. +.++|||.||-||| ||.||-..+.+
T Consensus 201 i~sl~~~~~sl~~sp~~t-~piiVHCSAGvGRT-GTFIalD~ll~ 243 (302)
T COG5599 201 IRSLTEVIHSLNDSPVRT-GPIIVHCSAGVGRT-GTFIALDILLR 243 (302)
T ss_pred HHHHHHHHHHhhcCcCCC-CCEEEEeccCCCCc-ceeeeHHHHHh
Confidence 444455555544332 34 78999999999999 99888654443
No 48
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=95.47 E-value=0.02 Score=59.11 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcC
Q 001565 112 HWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL 148 (1052)
Q Consensus 112 ~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~ 148 (1052)
.+|... . +-+++||.+||-|| |+++|-+|...|.
T Consensus 118 ~~l~~~-~-~p~l~HC~aGKDRT-G~~~alll~~lGV 151 (164)
T PF13350_consen 118 ELLADA-P-GPVLFHCTAGKDRT-GVVAALLLSLLGV 151 (164)
T ss_dssp HHHH-T-T---EEEE-SSSSSHH-HHHHHHHHHHTT-
T ss_pred HHhccC-C-CcEEEECCCCCccH-HHHHHHHHHHcCC
Confidence 344443 3 68999999999998 9988777776664
No 49
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.64 E-value=0.084 Score=62.13 Aligned_cols=55 Identities=22% Similarity=0.155 Sum_probs=33.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
-|.|+|.|. ....++.+++. ..+....++.=++|||.+|.||+ |++++...+...
T Consensus 271 ~WPd~~~p~-~~~~~l~~~~~--~~~~~~~~~~P~vVhcsaG~gRt-gt~v~~~~~~~~ 325 (415)
T KOG0789|consen 271 NWPDHGAPD-SVKSILPLLRQ--SVLELRPKQEPIEVHCSAGAGRA-GTLVLIEHALIE 325 (415)
T ss_pred CCccccCCc-chHHHHHHHHh--hhhhhcCCCCCeEEECCCCCCcc-chHHHHHHHHHH
Confidence 566777773 24444445444 33333332245899999999998 888875544443
No 50
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.63 E-value=0.036 Score=70.62 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=37.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHH--hhCCCccEEEEEecCCCcchHHHHHH
Q 001565 89 PRQYEGCPLLPMSLIQHFLRVCEHWL--LLGDHQNVILLHSERGGWPLLAFLLA 140 (1052)
Q Consensus 89 P~~d~g~P~p~L~~L~~~c~~~~~WL--~~d~~~NVvvVHCk~GkgRt~g~mia 140 (1052)
.|.|||.|. .-.-|+.|.+.+..+- .+++ +||||.||-||| |+.|+
T Consensus 702 ~Wpd~gvPe-~~t~lL~f~rrvk~~~p~~aGP----iVVHCSAGvGRT-G~fi~ 749 (1087)
T KOG4228|consen 702 AWPDHGVPE-TPTGLLKFRRRVKTFNPPDAGP----IVVHCSAGVGRT-GCFIV 749 (1087)
T ss_pred cCCCCCCcc-cchHHHHHHHHhccCCCcCCCC----EEEECCCCCCCc-ceEEE
Confidence 599999983 5678888999888876 4444 899999999998 77655
No 51
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=94.46 E-value=0.083 Score=58.52 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=27.1
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCccHH
Q 001565 122 VILLHSERGGWPLLAFLLASLLIFRKLHSGER 153 (1052)
Q Consensus 122 VvvVHCk~GkgRt~g~mia~yLly~~~~~~~~ 153 (1052)
=|++||++||-|| |+++|||+.+.+......
T Consensus 138 PvL~HC~~GkdRT-Gl~~al~r~~~~~~~~~v 168 (249)
T COG2365 138 PVLIHCTAGKDRT-GLVAALYRKLVGGSDETV 168 (249)
T ss_pred CEEEecCCCCcch-HHHHHHHHHHhCCchhHH
Confidence 4899999999998 999999999998765543
No 52
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.41 E-value=0.024 Score=68.41 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=54.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHH-----HHHHHHHH
Q 001565 89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGER-----RTLEIVHR 161 (1052)
Q Consensus 89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~-----~Al~~~~k 161 (1052)
-|.++|.|+ .-.-|++|=+.+.+.+.--.+ -|+|||.+|-||| ||-|.-=|+..++..|+. .+|+++..
T Consensus 899 SWp~egvPa-sarslLdFRRKVNK~YRGRSc--pIiVH~sdGaGRT-G~YiliDmvl~Rm~kGakeIDIaATlEHlRD 972 (1004)
T KOG0793|consen 899 SWPDEGVPA-SARSLLDFRRKVNKCYRGRSC--PIIVHCSDGAGRT-GTYILIDMVLNRMAKGAKEIDIAATLEHLRD 972 (1004)
T ss_pred cccccCCcc-chHHHHHHHHHhhhhccCCCC--ceEEEccCCCCcc-ceeeeHHHHHHHHhccchhhhHHHHHHHHhh
Confidence 789999995 778899999999998887654 7899999999998 998887777776665553 25666643
No 53
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=94.41 E-value=0.47 Score=51.56 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=57.7
Q ss_pred HHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC----CCCChHHHHHHHHHHHHHHHhhCCCccEE
Q 001565 48 LTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG----CPLLPMSLIQHFLRVCEHWLLLGDHQNVI 123 (1052)
Q Consensus 48 ~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g----~P~p~L~~L~~~c~~~~~WL~~d~~~NVv 123 (1052)
..||++-|- .-|.-||.|.|-.....-+...+..+.++..+-.. -| ...+..+.++.+-+.| .|..+.=+
T Consensus 78 fsFL~~L~L---ksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P--~~~~~~~~i~~~l~~l-ld~~N~P~ 151 (249)
T KOG1572|consen 78 FSFLKTLHL---KSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEP--FVNIPDHSIRKALKVL-LDKRNYPI 151 (249)
T ss_pred hHHHHHhhh---heEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCC--CCCChHHHHHHHHHHH-hcccCCce
Confidence 456766543 34555676644211111122334555555433222 22 3444445555444443 34443679
Q ss_pred EEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHh
Q 001565 124 LLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHRE 162 (1052)
Q Consensus 124 vVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~ 162 (1052)
+|||++||-|| |++|+|+=-..+ |.... .|+.|.++
T Consensus 152 Lihc~rGkhRt-g~lVgclRklq~-W~lss-il~Ey~~f 187 (249)
T KOG1572|consen 152 LIHCKRGKHRT-GCLVGCLRKLQN-WSLSS-ILDEYLRF 187 (249)
T ss_pred EEecCCCCcch-hhhHHHHHHHhc-cchhH-HHHHHHHh
Confidence 99999999998 999999864444 33332 56666544
No 54
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=93.41 E-value=0.52 Score=45.84 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=48.3
Q ss_pred ceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCc-cc-----hhhhhhcccCcEEeeC
Q 001565 15 GLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEK-QS-----EFAEILCEYDVTVLDY 88 (1052)
Q Consensus 15 DLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~-~s-----~~~~~~s~f~~~V~~y 88 (1052)
|+..|++++.+. +-++ .+|+.. |.+. | ==.|.|++.... .. .+......++++.++.
T Consensus 1 di~~i~~~~~vs--~Q~~-----------~~d~~~-la~~--G-fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 1 DIRQISDDLSVS--GQPS-----------PEDLAQ-LAAQ--G-FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp --EEEETTEEEE--CS-------------HHHHHH-HHHC--T---EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred CCEecCCCeEEC--CCCC-----------HHHHHH-HHHC--C-CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence 788999999999 4443 233333 3332 2 124788863311 11 1222345788899999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcch
Q 001565 89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPL 134 (1052)
Q Consensus 89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt 134 (1052)
|+...+ ++.+.+..|.+.+++ .... |++||+.|. |.
T Consensus 64 Pv~~~~---~~~~~v~~f~~~l~~---~~~P---vl~hC~sG~-Ra 99 (110)
T PF04273_consen 64 PVDGGA---ITEEDVEAFADALES---LPKP---VLAHCRSGT-RA 99 (110)
T ss_dssp ---TTT-----HHHHHHHHHHHHT---TTTS---EEEE-SCSH-HH
T ss_pred ecCCCC---CCHHHHHHHHHHHHh---CCCC---EEEECCCCh-hH
Confidence 888653 378888888776655 3445 999999985 75
No 55
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=92.87 E-value=0.2 Score=50.78 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=42.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCc--c-hHHHHHHHHHHHhcCCccHHHHHHHHH
Q 001565 91 QYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGW--P-LLAFLLASLLIFRKLHSGERRTLEIVH 160 (1052)
Q Consensus 91 ~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~Gkg--R-t~g~mia~yLly~~~~~~~~~Al~~~~ 160 (1052)
.|-|. +.|.+|++||..+++-|+....+|-.||||..... | -.|++||||++....++. ++|++.+.
T Consensus 39 ~DFGP--lnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~sp-e~A~~~l~ 108 (141)
T PF14671_consen 39 ADFGP--LNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSP-EEAYKPLA 108 (141)
T ss_dssp S--------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---H-HHHHHHHT
T ss_pred CcCCC--ccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHH
Confidence 34454 48999999999999999984333447778775422 3 358999999988877755 45888874
No 56
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=89.74 E-value=0.55 Score=60.42 Aligned_cols=73 Identities=25% Similarity=0.366 Sum_probs=45.6
Q ss_pred cEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCCC-----ChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcc
Q 001565 59 AFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPL-----LPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWP 133 (1052)
Q Consensus 59 ~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P~-----p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgR 133 (1052)
-|+|-|..++.++ .|..| +++|||. ..-..|..+.+....|-+...+ .=++|||.+|.||
T Consensus 967 ~f~i~n~~~~~~r------------~v~qf--q~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~-~P~~Vhc~nG~~r 1031 (1087)
T KOG4228|consen 967 EFGVTNEREKQSR------------TVRQF--QFTGWPEYGKPPQSKGPISKIPSVASKWQQLGAD-GPIIVHCLNGVGR 1031 (1087)
T ss_pred hheeeeccccCce------------EEEEE--EecCCcccCcCCCCcchhhhHHHHHHHHHhhcCC-CCEEEEEcCCCcc
Confidence 4666666644331 34333 5667761 1234445555555677776654 6689999999999
Q ss_pred hHHHHHHHHHHHhc
Q 001565 134 LLAFLLASLLIFRK 147 (1052)
Q Consensus 134 t~g~mia~yLly~~ 147 (1052)
+ |+.+|+.++..+
T Consensus 1032 s-g~f~ai~~l~e~ 1044 (1087)
T KOG4228|consen 1032 T-GTFCAISILLER 1044 (1087)
T ss_pred e-eehHHHHHHHHH
Confidence 8 887776655443
No 57
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=84.80 E-value=5.2 Score=41.06 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=65.7
Q ss_pred CceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhc-c-cCcEEeeCCCC
Q 001565 14 DGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILC-E-YDVTVLDYPRQ 91 (1052)
Q Consensus 14 LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s-~-f~~~V~~yP~~ 91 (1052)
.|.-|.-.||+|. | ..++.....||+- .-||-=+.-+.+..+-+.... + +...+-|.-+.
T Consensus 7 i~~~~f~t~Ivv~----P-------------l~~~ae~~~rh~~-t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~ 68 (172)
T COG5350 7 IDFDPFMTRIVVS----P-------------LSVIAETAARHGP-THMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEP 68 (172)
T ss_pred cccccceeeeEec----h-------------HHHHHHHHhhcCC-ceEEEeecccccccCccccchhhceeEeeccccCC
Confidence 4556666777776 2 2355667778875 455544444444322111111 1 12233344445
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchH-HHHHHHHHHHhcC
Q 001565 92 YEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLL-AFLLASLLIFRKL 148 (1052)
Q Consensus 92 d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~-g~mia~yLly~~~ 148 (1052)
+.|+=++.-+.+..++..+++|=...+ ++|||-+|-+|+. +.|++++-++..+
T Consensus 69 ~~g~~ap~e~Hv~~i~DF~~~wp~~ap----llIHC~aGISRStA~A~i~a~ala~~~ 122 (172)
T COG5350 69 DDGWIAPGEAHVRAIIDFADEWPRFAP----LLIHCYAGISRSTAAALIAALALAPDM 122 (172)
T ss_pred CccccCCCHHHHHHHHHHHhcCccccc----eeeeeccccccchHHHHHHHHhhcccc
Confidence 555434467788888888889965444 8999999999953 4455566665543
No 58
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=75.64 E-value=30 Score=33.83 Aligned_cols=119 Identities=9% Similarity=0.069 Sum_probs=65.5
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|.++-|.-++++. ..+.|.||+.|+..+. ...+.|....... -.|. +.+.|++.- -...+.|+|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~--------~~~~kT~v~~~t~nP~Wn----e~f~f~~~~-~~~~l~~~v 65 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP--------PQKYQSSTQKNTSNPFWD----EHFLFELSP-NSKELLFEV 65 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC--------CcEEEeEEEecCCCCccC----ceEEEEeCC-CCCEEEEEE
Confidence 3455566677776 4578999999997531 1123332211111 1232 235666632 245688999
Q ss_pred EeCCCCCCcceeEEEEEeecccccCC---eEEEecCCCCccccccCCCCCCcEEEEEEecCC
Q 001565 282 VHLDLDPEREVMMFRVMFNTAFIRSN---ILMLNSENLDILWDSKERYPKGFRAEVLFGDVE 340 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT~FI~~n---~L~l~k~eLD~~~~~k~~fp~dF~Vel~F~~~~ 340 (1052)
|+.+.. .+...|.++.|...-|..+ ...|.. ......+....-...++|.|.+..
T Consensus 66 ~d~~~~-~~~~~lG~~~i~l~~l~~~~~~~~~~~L---~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 66 YDNGKK-SDSKFLGLAIVPFDELRKNPSGRQIFPL---QGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EECCCC-CCCceEEEEEEeHHHhccCCceeEEEEe---cCCCCCCCCcceEEEEEEEEeccc
Confidence 988753 4467888999888877632 122222 111001234455677788876543
No 59
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=72.95 E-value=31 Score=33.61 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=49.4
Q ss_pred EEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-----cccCCeEE
Q 001565 206 DCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-----LVQGDVVL 279 (1052)
Q Consensus 206 ~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-----~V~GDV~I 279 (1052)
+=|.-++++..+..+.|.||++|+-++ ..+.|....+.+ -.|. +.+.|.+.. .-...+.|
T Consensus 4 ~V~~A~~L~~~d~~g~~dpYv~v~l~~----------~~~kT~v~~~t~nP~Wn----e~f~F~v~~~~~~~~~~~~l~~ 69 (126)
T cd08682 4 TVLQARGLLCKGKSGTNDAYVIIQLGK----------EKYSTSVKEKTTSPVWK----EECSFELPGLLSGNGNRATLQL 69 (126)
T ss_pred EEEECcCCcCCCCCcCCCceEEEEECC----------eeeeeeeecCCCCCEeC----ceEEEEecCcccCCCcCCEEEE
Confidence 334455666666667899999998763 123333221111 1232 235566643 23446778
Q ss_pred EEEeCCCCCCcceeEEEEEeeccccc
Q 001565 280 ECVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 280 ~~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
.||+.+. .++...|.++.|...=+.
T Consensus 70 ~v~d~~~-~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 70 TVMHRNL-LGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred EEEEccc-cCCCceeEEEEEEHHHhh
Confidence 8888764 344567888888776543
No 60
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=72.70 E-value=20 Score=41.33 Aligned_cols=105 Identities=8% Similarity=0.058 Sum_probs=58.1
Q ss_pred eeeeCcEEEEecCCC--CCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC
Q 001565 17 LEFIERVYVFDSCFS--TEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG 94 (1052)
Q Consensus 17 tYIT~RIiam~~~fP--ae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g 94 (1052)
..+...|+.| |+. ..++.+..-.-..+++.+.|++ + .+.|+..+.... +....|.+.+ +
T Consensus 89 ~~~~~eLv~~--G~d~~v~~~~~~~~~is~~el~~~l~~---~-~~vlIDVR~~~E-----~~~GhI~GAi--------~ 149 (314)
T PRK00142 89 VKVRKEIVAL--GLDDDIDPLENVGTYLKPKEVNELLDD---P-DVVFIDMRNDYE-----YEIGHFENAI--------E 149 (314)
T ss_pred eeeeeeeeec--CCCCCCCccccCCcccCHHHHHHHhcC---C-CeEEEECCCHHH-----HhcCcCCCCE--------e
Confidence 6777888888 674 3344333334666777777764 2 588888876411 1111122211 1
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 95 CPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 95 ~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
+++..+.++...+++.+....+ .-|||||.+| .|. .++++||...|
T Consensus 150 ---ip~~~~~~~~~~l~~~~~~~kd-k~IvvyC~~G-~Rs--~~aa~~L~~~G 195 (314)
T PRK00142 150 ---PDIETFREFPPWVEENLDPLKD-KKVVMYCTGG-IRC--EKASAWMKHEG 195 (314)
T ss_pred ---CCHHHhhhhHHHHHHhcCCCCc-CeEEEECCCC-cHH--HHHHHHHHHcC
Confidence 2456555555444444443333 4699999766 463 45566665433
No 61
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=72.62 E-value=50 Score=31.89 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=54.2
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|+++=+.-++++..+..+.|.||++|+.++ +.+|.|....+.. ..|. +.+.|.+.- ....+.|++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~---------~~~~kT~~~~~t~nP~Wn----e~f~f~v~~-~~~~l~~~v 67 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG---------KTVYKSKTIYKNLNPVWD----EKFTLPIED-VTQPLYIKV 67 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC---------EEEEEeeeccCCCCCccc----eeEEEEecC-CCCeEEEEE
Confidence 445555556777777678899999999763 3456554322221 1222 235555532 356788888
Q ss_pred EeCCCCCCcceeEEEEEeeccccc
Q 001565 282 VHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
|+.+. ..+...|.++.|...=+.
T Consensus 68 ~D~d~-~~~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 68 FDYDR-GLTDDFMGSAFVDLSTLE 90 (121)
T ss_pred EeCCC-CCCCcceEEEEEEHHHcC
Confidence 88764 234567888888777665
No 62
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=70.94 E-value=19 Score=33.62 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEE
Q 001565 44 LHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVI 123 (1052)
Q Consensus 44 i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVv 123 (1052)
.+++.+.|+ .+ ++.|...++... |.. .+.+ ...+.| ++.+..+...+...+..+.+ .-|
T Consensus 6 ~~~l~~~~~---~~-~~~iiDvR~~~e----------~~~--ghi~-gA~~ip---~~~~~~~~~~~~~~~~~~~~-~~i 64 (101)
T cd01518 6 PAEWNELLE---DP-EVVLLDVRNDYE----------YDI--GHFK-GAVNPD---VDTFREFPFWLDENLDLLKG-KKV 64 (101)
T ss_pred HHHHHHHHc---CC-CEEEEEcCChhh----------hhc--CEec-cccCCC---cccHhHhHHHHHhhhhhcCC-CEE
Confidence 356666665 23 688888876422 110 1111 112333 44444444444444443444 569
Q ss_pred EEEecCCCcchHHHHHHHHHHHhc
Q 001565 124 LLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 124 vVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
||+|..| .|+ ...|.+|...|
T Consensus 65 vvyC~~G-~rs--~~a~~~L~~~G 85 (101)
T cd01518 65 LMYCTGG-IRC--EKASAYLKERG 85 (101)
T ss_pred EEECCCc-hhH--HHHHHHHHHhC
Confidence 9999876 464 34455554433
No 63
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=67.13 E-value=51 Score=31.74 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=50.1
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccceecccCCcEEEEeecccccCCeEEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECV 282 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV~I~~~ 282 (1052)
|+++-|.-++++..+..+.|.||++|+-.+.. .....++++..+. --.|. +.+.|.+......-+.|++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~-~~~~kT~vv~~t~-----nP~Wn----e~f~f~i~~~~~~~l~v~v~ 71 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS-DEKKRTKTIKNSI-----NPVWN----ETFEFRIQSQVKNVLELTVM 71 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC-CccCccceecCCC-----CCccc----eEEEEEeCcccCCEEEEEEE
Confidence 34555556667766555779999999864210 0111222222221 01222 23556554333334678888
Q ss_pred eCCCCCCcceeEEEEEeecccccC
Q 001565 283 HLDLDPEREVMMFRVMFNTAFIRS 306 (1052)
Q Consensus 283 h~~~~~~~~~~mFr~~FnT~FI~~ 306 (1052)
+.+.. +...|.++.|...=+..
T Consensus 72 d~d~~--~~~~iG~~~~~l~~l~~ 93 (119)
T cd04036 72 DEDYV--MDDHLGTVLFDVSKLKL 93 (119)
T ss_pred ECCCC--CCcccEEEEEEHHHCCC
Confidence 87643 45678888887765553
No 64
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=66.06 E-value=48 Score=32.32 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=51.9
Q ss_pred CceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeeccc-ccCCeE
Q 001565 201 RALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCL-VQGDVV 278 (1052)
Q Consensus 201 ~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~-V~GDV~ 278 (1052)
..|.++=|..++++..+ .+.|.||++||-... ........|....+.. -.| ++.+.|++.-. +.--+.
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~-----~~~~~~~kT~v~~~t~~P~~----nE~F~f~v~~~~~~~~l~ 81 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPD-----KEVRFRQKTSTVPDSANPLF----HETFSFDVNERDYQKRLL 81 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeC-----CCCcceEeCccccCCCCCcc----ccEEEEEcChHHhCCEEE
Confidence 45778878888888877 678999999997631 1111222332211111 123 23466766322 222355
Q ss_pred EEEEeCCCCCCcceeEEEEEeecccc
Q 001565 279 LECVHLDLDPEREVMMFRVMFNTAFI 304 (1052)
Q Consensus 279 I~~~h~~~~~~~~~~mFr~~FnT~FI 304 (1052)
|.+++.+....+++.|.++.|.-.=|
T Consensus 82 v~V~~~~~~~~~~~~lG~~~i~l~~~ 107 (119)
T cd08685 82 VTVWNKLSKSRDSGLLGCMSFGVKSI 107 (119)
T ss_pred EEEECCCCCcCCCEEEEEEEecHHHh
Confidence 66676654322356777777765533
No 65
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=64.91 E-value=30 Score=34.39 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=54.4
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccC
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQG 275 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~G 275 (1052)
+....|+++-|.-+.++..+..+.|.||++|+-.... + ......|....+.. ..| ++.+.|++.. .++.
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~----~-~~~~~kT~v~~~t~nP~w----nE~F~f~i~~~~l~~ 81 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGL----K-LIKTKKTSCMRGTIDPFY----NESFSFKVPQEELEN 81 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCC----c-ccceEcCccccCCCCCcc----ceeEEEeCCHHHhCC
Confidence 4445678888888888887777889999999853210 0 00012221111111 122 2335666632 2333
Q ss_pred C-eEEEEEeCCCCCCcceeEEEEEeecccc
Q 001565 276 D-VVLECVHLDLDPEREVMMFRVMFNTAFI 304 (1052)
Q Consensus 276 D-V~I~~~h~~~~~~~~~~mFr~~FnT~FI 304 (1052)
. +.|.||+.+. ..+...|.++.|....+
T Consensus 82 ~~l~~~V~d~d~-~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 82 VSLVFTVYGHNV-KSSNDFIGRIVIGQYSS 110 (135)
T ss_pred CEEEEEEEeCCC-CCCCcEEEEEEEcCccC
Confidence 2 5678888654 34567888888776443
No 66
>PRK01415 hypothetical protein; Validated
Probab=63.65 E-value=34 Score=38.13 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=57.0
Q ss_pred eeeeCcEEEEecCCCCCCCC--cccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC
Q 001565 17 LEFIERVYVFDSCFSTEVVP--DGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG 94 (1052)
Q Consensus 17 tYIT~RIiam~~~fPae~~~--E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g 94 (1052)
.-|-..|+.| |.+..... -+.| -..+++.++|+. + .+.|...++... | .+-+++ |
T Consensus 90 vr~k~eiV~~--g~~~~~~~~~~g~~-i~p~e~~~ll~~---~-~~vvIDVRn~~E----------~--~~Ghi~----g 146 (247)
T PRK01415 90 VRLKKEIVAM--NVDDLNVDLFKGEY-IEPKDWDEFITK---Q-DVIVIDTRNDYE----------V--EVGTFK----S 146 (247)
T ss_pred EEeeceEEec--CCCCCCccccCccc-cCHHHHHHHHhC---C-CcEEEECCCHHH----------H--hcCCcC----C
Confidence 3466789999 55532211 1222 445567777764 2 578888876421 1 111221 2
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 95 CPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 95 ~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
+=.+++..+-+|...++..+..+.+ .-|+|+|.+| .| +..+|++|...|
T Consensus 147 Ainip~~~f~e~~~~~~~~~~~~k~-k~Iv~yCtgG-iR--s~kAa~~L~~~G 195 (247)
T PRK01415 147 AINPNTKTFKQFPAWVQQNQELLKG-KKIAMVCTGG-IR--CEKSTSLLKSIG 195 (247)
T ss_pred CCCCChHHHhhhHHHHhhhhhhcCC-CeEEEECCCC-hH--HHHHHHHHHHcC
Confidence 1113466666555544444444444 4599999766 46 466777776554
No 67
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.33 E-value=8.4 Score=46.96 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=38.3
Q ss_pred hCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHH---HHHHHhhCCCccEEEEEecCC
Q 001565 54 EFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRV---CEHWLLLGDHQNVILLHSERG 130 (1052)
Q Consensus 54 ~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~---~~~WL~~d~~~NVvvVHCk~G 130 (1052)
.|...+..+|++.++.. .++.++. .|| |+.|..++.. |-.=...+. .=|+|||.+|
T Consensus 326 s~~~~k~~~~~~~d~s~------wlS~Le~---------T~W----L~Hi~~lLaga~~Ia~kVe~~~--~sVlVHCSDG 384 (717)
T KOG4471|consen 326 SLRKLKEICYPSPDESN------WLSALES---------THW----LEHISSLLAGAVRIADKVESES--RSVLVHCSDG 384 (717)
T ss_pred HHHhHHHhhcCCCCchh------HHHhhcc---------chH----HHHHHHHHHHHHHHHHHHhcCC--ceEEEEcCCC
Confidence 33334777888877632 3343332 233 4444444443 333333333 4799999999
Q ss_pred CcchHHHHHHHHHH
Q 001565 131 GWPLLAFLLASLLI 144 (1052)
Q Consensus 131 kgRt~g~mia~yLl 144 (1052)
.-||.-++.-|.||
T Consensus 385 WDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 385 WDRTAQLVSLAMLL 398 (717)
T ss_pred ccchHHHHHHHHHH
Confidence 99984333334444
No 68
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=62.49 E-value=23 Score=41.41 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=22.2
Q ss_pred cEEEEEecCCCcchHHHHHHHH--HHHhcCCccHHHHHHHHHH
Q 001565 121 NVILLHSERGGWPLLAFLLASL--LIFRKLHSGERRTLEIVHR 161 (1052)
Q Consensus 121 NVvvVHCk~GkgRt~g~mia~y--Lly~~~~~~~~~Al~~~~k 161 (1052)
.-|+|||.+|.-|| +. |++| ||--..|.+-+--+.+|.|
T Consensus 232 ~~Vlvh~~dGwDrt-~q-~~sL~ql~lDpyyRTi~GF~~LIeK 272 (353)
T PF06602_consen 232 SSVLVHCSDGWDRT-SQ-LSSLAQLLLDPYYRTIEGFQVLIEK 272 (353)
T ss_dssp -EEEEECTTSSSHH-HH-HHHHHHHHH-CGGGSHHHHHHHHHH
T ss_pred ceEEEEcCCCCccc-HH-HHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 67889999999897 44 4444 3333345555433444443
No 69
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=62.22 E-value=63 Score=32.34 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=50.5
Q ss_pred ceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEE
Q 001565 202 ALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLE 280 (1052)
Q Consensus 202 ~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~ 280 (1052)
.|++.-+.-++++..+..+.|.||++|+-++ ..+.|....+.+ -.|. +.+.|.+.-.....+.|+
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~----------~~~kT~vi~~t~nP~Wn----e~f~f~v~~~~~~~l~i~ 81 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS----------QEHKTKVVSDTLNPKWN----SSMQFFVKDLEQDVLCIT 81 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECC----------EeeeccccCCCCCCccC----ceEEEEecCccCCEEEEE
Confidence 4666666666777776668899999999763 234443322211 1222 235555532233457788
Q ss_pred EEeCCCCCCcceeEEEEEeecc
Q 001565 281 CVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 281 ~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
||+.+. ..+...|.++.|.-.
T Consensus 82 V~D~d~-~~~d~~lG~~~i~l~ 102 (136)
T cd08375 82 VFDRDF-FSPDDFLGRTEIRVA 102 (136)
T ss_pred EEECCC-CCCCCeeEEEEEEHH
Confidence 998763 334467777776543
No 70
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=62.18 E-value=1.2e+02 Score=29.68 Aligned_cols=88 Identities=9% Similarity=0.050 Sum_probs=48.1
Q ss_pred CceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccceecccCCcEEEEeecccccCCeEEE
Q 001565 201 RALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLE 280 (1052)
Q Consensus 201 ~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV~I~ 280 (1052)
+.|.+.-|.-++++. .+.|.||++|+-++ +....|......--.| ++.+.|++.-.-...+.|.
T Consensus 4 ~~L~V~Vi~A~~L~~---~~~~DPYv~v~l~~---------~~~~kT~v~~~~nP~W----nE~f~f~~~~~~~~~l~v~ 67 (126)
T cd08400 4 RSLQLNVLEAHKLPV---KHVPHPYCVISLNE---------VKVARTKVREGPNPVW----SEEFVFDDLPPDVNSFTIS 67 (126)
T ss_pred eEEEEEEEEeeCCCC---CCCCCeeEEEEECC---------EeEEEeecCCCCCCcc----CCEEEEecCCCCcCEEEEE
Confidence 346666666677765 35799999999864 2233332211111122 2335565321111346677
Q ss_pred EEeCCCCCCcceeEEEEEeeccccc
Q 001565 281 CVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 281 ~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
+++.+. ..+...|.++.+.-+.+.
T Consensus 68 v~d~~~-~~~d~~iG~v~i~l~~l~ 91 (126)
T cd08400 68 LSNKAK-RSKDSEIAEVTVQLSKLQ 91 (126)
T ss_pred EEECCC-CCCCCeEEEEEEEHhHcc
Confidence 787653 345667888877755554
No 71
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=62.03 E-value=43 Score=32.78 Aligned_cols=88 Identities=9% Similarity=0.081 Sum_probs=45.4
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccceecccCCcEEEEeecccccCCeEEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECV 282 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV~I~~~ 282 (1052)
+++.-|.-++++..+..+.|.||++|+.++... ...++.+..+. --.|. +.+.|++...-...+.|+|+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~--~~kT~~v~~t~-----nP~Wn----e~f~f~~~~~~~~~L~~~V~ 70 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI--NDRDNYIPNTL-----NPVFG----KMFELEATLPGNSILKISVM 70 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeec--cceeeEEECCC-----CCccc----eEEEEEecCCCCCEEEEEEE
Confidence 345555566677777678899999999875210 00011111110 01221 22445443222335777888
Q ss_pred eCCCCCCcceeEEEEEeecc
Q 001565 283 HLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 283 h~~~~~~~~~~mFr~~FnT~ 302 (1052)
+.+. +++...|.++.+...
T Consensus 71 d~d~-~~~dd~iG~~~i~l~ 89 (124)
T cd04037 71 DYDL-LGSDDLIGETVIDLE 89 (124)
T ss_pred ECCC-CCCCceeEEEEEeec
Confidence 8754 334456666665443
No 72
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=61.71 E-value=78 Score=30.85 Aligned_cols=89 Identities=11% Similarity=0.030 Sum_probs=48.4
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc--ccc-CCeE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC--LVQ-GDVV 278 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~--~V~-GDV~ 278 (1052)
|+++=|.-++++..+..+.|.||++|+-.+. .+.|....+.. -.|. +.+.|.+.- .+. --+.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~----------~~rT~v~~~t~nP~Wn----e~f~f~~~~~~~~~~~~l~ 67 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQ----------KKRTRTKPKDLNPVWN----EKLVFNVSDPSRLSNLVLE 67 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCE----------EecceeEcCCCCCccc----eEEEEEccCHHHccCCeEE
Confidence 4455555666776666678999999997642 12222111111 1222 235565532 122 2356
Q ss_pred EEEEeCCCCCCcceeEEEEEeeccccc
Q 001565 279 LECVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 279 I~~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
|.+|+.+........|.++.|.-.-|.
T Consensus 68 ~~V~d~~~~~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 68 VYVYNDRRSGRRRSFLGRVRISGTSFV 94 (127)
T ss_pred EEEeeCCCCcCCCCeeeEEEEcHHHcC
Confidence 677776532224567888888776654
No 73
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=61.41 E-value=43 Score=32.05 Aligned_cols=86 Identities=10% Similarity=0.053 Sum_probs=48.7
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccceecccCCcEEEEeecccccCCeEEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECV 282 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV~I~~~ 282 (1052)
|+++=|.-++++..+..+.|.||++|+-++. ...++.+..+.. -..|. +.+.|.+.....-.+.|+||
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~----~~kT~~~~~~~~----nP~Wn----e~f~f~v~~~~~~~l~i~v~ 70 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGV----TKKTKTDFRGGQ----HPEWD----EELRFEITEDKKPILKVAVF 70 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECCC----ccccccccCCCC----CCccC----ceEEEEecCCCCCEEEEEEE
Confidence 4555566667777666678999999997642 111222221100 11222 23556654333445788999
Q ss_pred eCCCCCCcceeEEEEEeecc
Q 001565 283 HLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 283 h~~~~~~~~~~mFr~~FnT~ 302 (1052)
+.+.. + ...|.++.|...
T Consensus 71 d~~~~-~-~~~iG~~~~~l~ 88 (118)
T cd08681 71 DDDKR-K-PDLIGDTEVDLS 88 (118)
T ss_pred eCCCC-C-CcceEEEEEecH
Confidence 87642 2 467777777665
No 74
>PRK05320 rhodanese superfamily protein; Provisional
Probab=61.02 E-value=29 Score=38.82 Aligned_cols=107 Identities=7% Similarity=-0.071 Sum_probs=54.3
Q ss_pred eeCcEEEEecCCCCCCCCcccc-cccHHHHHHHHhhhCC--CCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCC
Q 001565 19 FIERVYVFDSCFSTEVVPDGMY-QLYLHEILTELHEEFP--DSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGC 95 (1052)
Q Consensus 19 IT~RIiam~~~fPae~~~E~~Y-RN~i~dV~~~L~~~h~--~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~ 95 (1052)
+-+-|++| ++++....+... .-...++.++|++.+. +....|...++... +....|.+. .+.
T Consensus 90 ~k~eiv~~--g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E-----~~~Ghi~GA--------ini 154 (257)
T PRK05320 90 LKREIITM--KRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFE-----VDVGTFDGA--------LDY 154 (257)
T ss_pred hhhHHhhc--CCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHH-----HccCccCCC--------EeC
Confidence 44556666 555432212222 2445667777766431 11477888776421 111112111 123
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 96 PLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 96 P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
+++.+.++...+..++..... .-|+|+|.+| .| +..++.+|...|
T Consensus 155 ---Pl~~f~~~~~~l~~~~~~~kd-k~IvvyC~~G-~R--s~~Aa~~L~~~G 199 (257)
T PRK05320 155 ---RIDKFTEFPEALAAHRADLAG-KTVVSFCTGG-IR--CEKAAIHMQEVG 199 (257)
T ss_pred ---ChhHhhhhHHHHHhhhhhcCC-CeEEEECCCC-HH--HHHHHHHHHHcC
Confidence 467666665555555432222 3489999887 46 366667765443
No 75
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=58.04 E-value=67 Score=31.04 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=52.5
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-ccc-
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQ- 274 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~- 274 (1052)
.....|.++-|..++++..+..+.|.||++|+-... ......+.|....+.. ..|. +.+.|++.. .++
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-----~~~~~~~kT~v~~~~~nP~wn----e~f~f~i~~~~l~~ 83 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD-----KSKSTRRKTSVKKDNLNPVFD----ETFEFPVSLEELKR 83 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC-----CCCCceEecccccCCCCCEEC----eEEEEecCHHHhcC
Confidence 344678888888899998887788999999997521 1112344443321111 1232 235666532 233
Q ss_pred CCeEEEEEeCCCCC-CcceeEEEEEee
Q 001565 275 GDVVLECVHLDLDP-EREVMMFRVMFN 300 (1052)
Q Consensus 275 GDV~I~~~h~~~~~-~~~~~mFr~~Fn 300 (1052)
..+.|.+++.+..+ .+++.|.++.+.
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~ 110 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLID 110 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEe
Confidence 45667777765421 234445444443
No 76
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=56.91 E-value=57 Score=31.96 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCCceeEEEEEEeecCccCCC-CccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccC
Q 001565 199 PERALSLDCVILRAIPNFDAQ-NGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQG 275 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~~-~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~G 275 (1052)
....|.++-|..++++..+.. ++|.||++||-... ......+.|....+.+ -.|. +.+.|++.. .+.+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~-----~~~~~~~kT~v~~~t~nP~~n----E~f~f~v~~~~l~~ 83 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD-----KSNRGKRKTSVKKKTLNPVFN----ETLRYKVEREELPT 83 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC-----CCccccccCccCcCCCCCccC----ceEEEECCHHHhCC
Confidence 345688888888999988765 78999999997521 1011112232211111 1232 346676642 3443
Q ss_pred -CeEEEEEeCCCCCCcceeEEEEEeeccccc
Q 001565 276 -DVVLECVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 276 -DV~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
.+.|.||+.+. +.+.+.|.++.|.-+.+.
T Consensus 84 ~~L~~~V~d~~~-~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 84 RVLNLSVWHRDS-LGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred CEEEEEEEeCCC-CCCCcEeEEEEEecCccc
Confidence 46678888653 445567777777666543
No 77
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=56.56 E-value=1.3e+02 Score=25.97 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=49.6
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccc-cceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKT-LRHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~-~r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|.|+=+..++++..+..+.+.+|++|+..+.. ...+.|...... .-.|. +.+.|.+...-..+|.|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~~~~P~w~----e~~~~~~~~~~~~~l~~~V 69 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSE-------STKYKTKVKKNTSNPVWN----EEFEFPLDDPDLDSLSFEV 69 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTT-------CEEEEECCBSSBSSEEEE----EEEEEEESHGCGTEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceee-------eeeeeeeeeeccccceee----eeeeeeeecccccceEEEE
Confidence 34555667778777767789999999988521 134555432211 11232 2366766555556699999
Q ss_pred EeCCCCCCcceeEEE
Q 001565 282 VHLDLDPEREVMMFR 296 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr 296 (1052)
|+.+.. ++++.|.+
T Consensus 70 ~~~~~~-~~~~~iG~ 83 (85)
T PF00168_consen 70 WDKDSF-GKDELIGE 83 (85)
T ss_dssp EEETSS-SSEEEEEE
T ss_pred EECCCC-CCCCEEEE
Confidence 998753 22455544
No 78
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=55.94 E-value=65 Score=31.15 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=54.3
Q ss_pred CCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccC-C
Q 001565 200 ERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQG-D 276 (1052)
Q Consensus 200 ~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~G-D 276 (1052)
...|+++=|.-++++..+..+.|.||++|+-... .+.++.|....+.. -.| ++.+.|++.. .+.+ -
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-------~~~~~kT~v~~~t~~P~w----ne~f~f~v~~~~l~~~~ 83 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD-------RSNTKQSKIHKKTLNPEF----DESFVFEVPPQELPKRT 83 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC-------CCCcEeCceEcCCCCCCc----ccEEEEeCCHHHhCCCE
Confidence 4567777777888888777788999999997411 12234443221111 112 2335566532 2333 4
Q ss_pred eEEEEEeCCCCCCcceeEEEEEeeccccc
Q 001565 277 VVLECVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 277 V~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
+.|+|++.+. +.+.+.|.++.|.-+-+.
T Consensus 84 l~i~V~d~~~-~~~~~~iG~~~i~l~~~~ 111 (124)
T cd08387 84 LEVLLYDFDQ-FSRDECIGVVELPLAEVD 111 (124)
T ss_pred EEEEEEECCC-CCCCceeEEEEEeccccc
Confidence 6677887653 344567777777666554
No 79
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=53.79 E-value=45 Score=32.72 Aligned_cols=94 Identities=13% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccC-
Q 001565 199 PERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQG- 275 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~G- 275 (1052)
....|+++=|.-++++..+..+.|.||++|+-.+.. .....+.|....+.. -.| ++.+.|++.. .+.+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~-----~~~~~~kT~v~~~t~nP~w----ne~f~f~~~~~~l~~~ 81 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDA-----GKKSKHKTQVKKKTLNPEF----NEEFFYDIKHSDLAKK 81 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCC-----CccCCceeeeEeccCCCCc----ccEEEEECCHHHhCCC
Confidence 445677777788888888777889999999975311 011122222211111 122 1235566532 2332
Q ss_pred CeEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 276 DVVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 276 DV~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
-+.|++++.+. ..+++.|.++.|.-.
T Consensus 82 ~l~~~V~d~d~-~~~~~~lG~~~i~l~ 107 (133)
T cd08384 82 TLEITVWDKDI-GKSNDYIGGLQLGIN 107 (133)
T ss_pred EEEEEEEeCCC-CCCccEEEEEEEecC
Confidence 36677777653 234566777776653
No 80
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=53.65 E-value=27 Score=33.75 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=27.1
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeecc
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGR 231 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~ 231 (1052)
.....|.++-+.-++++..+..+.|.||++|+..
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~ 46 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLL 46 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEEC
Confidence 3456788888888888887777889999999874
No 81
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=53.53 E-value=1.2e+02 Score=28.72 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=48.1
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
+++.-+.-++++..+..+.|.||++|+.++ ..+.|....+.. -.|. +.+.|.+.-.-..-+.|++
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~----------~~~kT~v~~~t~nP~Wn----e~f~f~~~~~~~~~l~v~v 67 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN----------EKYKSKVCSKTLNPQWL----EQFDLHLFDDQSQILEIEV 67 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECC----------EeEecccccCCCCCcee----EEEEEEecCCCCCEEEEEE
Confidence 344445556677666567899999999864 123332211111 1222 2245554322234566778
Q ss_pred EeCCCCCCcceeEEEEEeeccccc
Q 001565 282 VHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
|+.+. ..+...|.++.|+-+-+.
T Consensus 68 ~d~~~-~~~~~~iG~~~~~l~~l~ 90 (116)
T cd08376 68 WDKDT-GKKDEFIGRCEIDLSALP 90 (116)
T ss_pred EECCC-CCCCCeEEEEEEeHHHCC
Confidence 87764 334567878777755444
No 82
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=52.17 E-value=1e+02 Score=29.25 Aligned_cols=84 Identities=13% Similarity=0.310 Sum_probs=42.8
Q ss_pred EEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEEEe
Q 001565 205 LDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLECVH 283 (1052)
Q Consensus 205 L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~~h 283 (1052)
|+=|.-++++..+..+.|.||++|+..+ +.++.|....... ..|. +.+.|.+.-.-...+.|+||+
T Consensus 3 v~vi~a~~L~~~~~~~~~dpyv~v~~~~---------~~~~~T~v~~~~~~P~Wn----e~f~~~~~~~~~~~l~~~v~d 69 (115)
T cd04040 3 VDVISAENLPSADRNGKSDPFVKFYLNG---------EKVFKTKTIKKTLNPVWN----ESFEVPVPSRVRAVLKVEVYD 69 (115)
T ss_pred EEEEeeeCCCCCCCCCCCCCeEEEEECC---------CcceeeceecCCCCCccc----ccEEEEeccCCCCEEEEEEEe
Confidence 3334445566666567799999999863 2345554321111 1121 123444322222346677777
Q ss_pred CCCCCCcceeEEEEEeecc
Q 001565 284 LDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 284 ~~~~~~~~~~mFr~~FnT~ 302 (1052)
.+. ..+...|.++.+.-.
T Consensus 70 ~~~-~~~~~~iG~~~~~l~ 87 (115)
T cd04040 70 WDR-GGKDDLLGSAYIDLS 87 (115)
T ss_pred CCC-CCCCCceEEEEEEHH
Confidence 653 233455666655533
No 83
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=51.67 E-value=63 Score=31.05 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=49.4
Q ss_pred CCCceeEEEEEEeecCccC-CCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccC
Q 001565 199 PERALSLDCVILRAIPNFD-AQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQG 275 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~-~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~G 275 (1052)
....|++.-|.-++++..+ ..+.|.||++||.... .+..+.|....... -.|. +.+.|++.. .++.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~-------~~~~~~T~v~~~~~~P~wn----e~f~f~i~~~~l~~ 80 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD-------ERRSLQSKVKRKTQNPNFD----ETFVFQVSFKELQR 80 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeC-------CCCceEeeeEcCCCCCccc----eEEEEEcCHHHhcc
Confidence 3456788878888888877 4678999999996411 11123332211111 1221 236666643 2322
Q ss_pred -CeEEEEEeCCCCCCcceeEEEEEeec
Q 001565 276 -DVVLECVHLDLDPEREVMMFRVMFNT 301 (1052)
Q Consensus 276 -DV~I~~~h~~~~~~~~~~mFr~~FnT 301 (1052)
-+.|++|+.+. ..+...|.++.|.-
T Consensus 81 ~~l~i~v~d~~~-~~~~~~iG~~~i~L 106 (123)
T cd08390 81 RTLRLSVYDVDR-FSRHCIIGHVLFPL 106 (123)
T ss_pred cEEEEEEEECCc-CCCCcEEEEEEEec
Confidence 36677888664 23345555554443
No 84
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=50.89 E-value=58 Score=33.99 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=66.3
Q ss_pred eCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCC----
Q 001565 20 IERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGC---- 95 (1052)
Q Consensus 20 T~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~---- 95 (1052)
..+|+|. +|=++..-...|. +..+.++.|++.. --.+|++-..+....+.-....|+.-|..||..-.+.
T Consensus 21 ~~~l~AT--s~ds~~~l~~kY~-~~~~nl~~L~~~g---~~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~ 94 (166)
T PF10354_consen 21 ATNLVAT--SYDSEEELLQKYP-DAEENLEELRELG---VTVLHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGK 94 (166)
T ss_pred CCeEEEe--ecCchHHHHHhcc-cHHHHHHHHhhcC---CccccCCCCCcccccccccCCcCCEEEEeCCCCCCCccchh
Confidence 5689999 6766432255666 4557778885543 3456787655443222112357888888887553111
Q ss_pred -CC-ChHHHHHHHHHHHHHHHhhCCCccEEEEEecC
Q 001565 96 -PL-LPMSLIQHFLRVCEHWLLLGDHQNVILLHSER 129 (1052)
Q Consensus 96 -P~-p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~ 129 (1052)
-. ..-++|.+|++++...|+.+.+ |.|-||.+
T Consensus 95 ~~i~~nr~Ll~~Ff~Sa~~~L~~~G~--IhVTl~~~ 128 (166)
T PF10354_consen 95 RNIRLNRELLRGFFKSASQLLKPDGE--IHVTLKDG 128 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCE--EEEEeCCC
Confidence 00 1348999999999999998775 88999976
No 85
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=50.41 E-value=1.2e+02 Score=29.80 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=52.7
Q ss_pred CCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccC-
Q 001565 199 PERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQG- 275 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~G- 275 (1052)
....|+++-|.-++++..+..+.|.||++|+-... ......+.|....+.+ ..|. +.+.|.+.. .+..
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~-----~~~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~~~~~ 82 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCE-----GRRLKKKKTSVKKNTLNPTYN----EALVFDVPPENVDNV 82 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeC-----CcccceecCCcccCCCCCccc----ceEEEECCHHHhCCC
Confidence 34568888888888888887788999999996421 0001122332111111 1222 235565532 2322
Q ss_pred CeEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 276 DVVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 276 DV~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
.+.|+|++.+. .++.+.|.++.|...
T Consensus 83 ~l~~~v~d~~~-~~~~~~IG~~~l~~~ 108 (134)
T cd08403 83 SLIIAVVDYDR-VGHNELIGVCRVGPN 108 (134)
T ss_pred EEEEEEEECCC-CCCCceeEEEEECCC
Confidence 36778888764 344567888877543
No 86
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=50.40 E-value=15 Score=40.27 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=46.7
Q ss_pred EEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCC---CCh
Q 001565 23 VYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCP---LLP 99 (1052)
Q Consensus 23 Iiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P---~p~ 99 (1052)
|||| +|.||.|= + | --..|++||+- ++ .+-.|||+.+ ||-.+.. . -.++-|-|..-. ..-
T Consensus 14 ~ivm-VGLPArGK--s-~--ia~kl~ryL~w-~g-~~~~vFn~g~--yRR~~~~------~-~~~~~ff~p~n~~~~~~R 76 (222)
T PF01591_consen 14 VIVM-VGLPARGK--S-Y--IARKLCRYLNW-LG-VKTKVFNVGD--YRRKLSG------A-PQDAEFFDPDNEEAKKLR 76 (222)
T ss_dssp EEEE-ESSTTSSH--H-H--HHHHHHHHHHH-TT---EEEEEHHH--HHHHHHS------S--S-GGGGSTT-HHHHHHH
T ss_pred EEEE-ECCCCCCH--H-H--HHHHHHHHHhh-cC-CCcceeeccc--ceecccc------c-ccccccCCCCChHHHHHH
Confidence 4666 69999882 1 1 23568888883 33 3899999986 3211111 1 111111111111 012
Q ss_pred HHHHHHHHHHHHHHHhhCCCccEEEEEecC
Q 001565 100 MSLIQHFLRVCEHWLLLGDHQNVILLHSER 129 (1052)
Q Consensus 100 L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~ 129 (1052)
.+.....+++|.+||..+.. +|++.=-..
T Consensus 77 ~~~a~~~l~dl~~~l~~~~G-~VAI~DATN 105 (222)
T PF01591_consen 77 EQIAKEALEDLIEWLQEEGG-QVAIFDATN 105 (222)
T ss_dssp HHHHHHHHHHHHHHHHTS---SEEEEES--
T ss_pred HHHHHHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence 35566788999999996665 677665554
No 87
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=50.19 E-value=1e+02 Score=29.70 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=49.5
Q ss_pred EEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEEEeCC
Q 001565 207 CVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLECVHLD 285 (1052)
Q Consensus 207 ~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~~h~~ 285 (1052)
+|.-++++..+..+.|.||++|+..+.. + .....++.|....+.+ -.|. +.+.|++.....-.+.|+||+.+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~--~-~~~~~~~kT~vi~~t~nP~wn----e~f~f~~~~~~~~~l~~~V~d~d 78 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGG--S-GQWVEIGRTEVIKNNLNPDFV----TTFTVDYYFEEVQKLRFEVYDVD 78 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCC--C-CceEEeccEeEeCCCCCCCce----EEEEEEEEeEeeeEEEEEEEEec
Confidence 3555666666656789999999987521 0 0111233332211111 1221 22555543333446888898877
Q ss_pred C---CCCcceeEEEEEeeccccc
Q 001565 286 L---DPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 286 ~---~~~~~~~mFr~~FnT~FI~ 305 (1052)
. ..+....|.++.+...=+.
T Consensus 79 ~~~~~~~~~d~iG~~~i~l~~l~ 101 (120)
T cd04048 79 SKSKDLSDHDFLGEAECTLGEIV 101 (120)
T ss_pred CCcCCCCCCcEEEEEEEEHHHHh
Confidence 4 1345566777776665544
No 88
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=49.73 E-value=1.4e+02 Score=28.79 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=43.6
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|+++-|.-+++...+..+.|.||++|+.++. .+.|....+.. -.| ++.+.|.+.-.-...+.|+|
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~----------~~kT~v~~~t~nP~W----ne~f~f~~~~~~~~~l~~~v 67 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ----------TLETSVVKKSCYPRW----NEVFEFELMEGADSPLSVEV 67 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCE----------EEeceeecCCCCCcc----CcEEEEEcCCCCCCEEEEEE
Confidence 4555555666766665677999999998641 23332211111 112 12344554321233467777
Q ss_pred EeCCCCCCcceeEEEEEeecc
Q 001565 282 VHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
++.+. .+....|.++.|.-+
T Consensus 68 ~d~~~-~~~~~~iG~~~~~l~ 87 (123)
T cd04025 68 WDWDL-VSKNDFLGKVVFSIQ 87 (123)
T ss_pred EECCC-CCCCcEeEEEEEEHH
Confidence 77653 233345555555433
No 89
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=49.27 E-value=65 Score=32.64 Aligned_cols=95 Identities=4% Similarity=0.060 Sum_probs=52.1
Q ss_pred CCCCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEe--cccccccc--ceecccCCcEEEEeecc
Q 001565 196 WPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFS--MSKKRKTL--RHYRQADCDVIKIDIQC 271 (1052)
Q Consensus 196 ~pp~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfs--t~~~~~~~--r~y~~~d~~~i~i~i~~ 271 (1052)
+.+....|++.=|.-++++.+...++-.||++|+-... ++.+-. |....... -.| ++.|.|++..
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~-------~k~~~KkKT~v~k~t~~~P~f----NEsF~Fdv~~ 77 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST-------GGLLYKKKTRLVKSSNGQVKW----GETMIFPVTQ 77 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC-------CCcceeecCccEECCCCCcee----cceEEEeCCc
Confidence 34555667777777777877654455579998864421 111211 11111111 123 2447888865
Q ss_pred cccCCeEE--EEEeCCCCCCcceeEEEEEeeccc
Q 001565 272 LVQGDVVL--ECVHLDLDPEREVMMFRVMFNTAF 303 (1052)
Q Consensus 272 ~V~GDV~I--~~~h~~~~~~~~~~mFr~~FnT~F 303 (1052)
... ||.+ ++++.+. +.+.+.|.++.|-..-
T Consensus 78 ~~~-~v~l~v~v~d~~~-~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 78 QEH-GIQFLIKLYSRSS-VRRKHFLGQVWISSDS 109 (135)
T ss_pred hhh-eeEEEEEEEeCCC-CcCCceEEEEEECCcc
Confidence 554 4555 4454432 4566788888887643
No 90
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=48.43 E-value=26 Score=42.33 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=39.6
Q ss_pred CcEEeeCCCCCCCCCCCh-HHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHH
Q 001565 82 DVTVLDYPRQYEGCPLLP-MSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIF 145 (1052)
Q Consensus 82 ~~~V~~yP~~d~g~P~p~-L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly 145 (1052)
...+++++.....--.-. ...|-++|..+..+|..+.. .=|+|+|..||-...|+++|.|-.|
T Consensus 338 ~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~-~~iLV~C~sGkDlSVgVaLaILc~~ 401 (451)
T PF04179_consen 338 SPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPG-KPILVCCDSGKDLSVGVALAILCKL 401 (451)
T ss_pred CceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCC-CcEEEEcCCcchHHHHHHHHHHHHh
Confidence 345666644432111001 36677788888888888444 5599999999987766666554333
No 91
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=47.76 E-value=1.3e+02 Score=28.22 Aligned_cols=84 Identities=7% Similarity=0.003 Sum_probs=46.5
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccc-cceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKT-LRHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~-~r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|+++=+.-++++..+..+.|.||++|+-++ ..+.|....+. -..|. +.+.|.+.-.-...+.|+|
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~----------~~~kT~v~~~t~nP~Wn----e~f~f~v~~~~~~~l~v~v 67 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK----------TTQKSKVKERTNNPVWE----EGFTFLVRNPENQELEIEV 67 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC----------EEEeCccccCCCCCccc----ceEEEEeCCCCCCEEEEEE
Confidence 445555666777766667899999999874 23333321111 11222 2355555332233567777
Q ss_pred EeCCCCCCcceeEEEEEeecccc
Q 001565 282 VHLDLDPEREVMMFRVMFNTAFI 304 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT~FI 304 (1052)
+..+. ...|.++.|+-.-|
T Consensus 68 ~d~~~----~~~iG~~~i~l~~l 86 (105)
T cd04050 68 KDDKT----GKSLGSLTLPLSEL 86 (105)
T ss_pred EECCC----CCccEEEEEEHHHh
Confidence 77653 34566666655433
No 92
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=47.43 E-value=1.3e+02 Score=29.24 Aligned_cols=85 Identities=11% Similarity=0.086 Sum_probs=44.6
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccc-eecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLR-HYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r-~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|.|+-+.-++++..+..+.|.||++|+-.+ ..++.|....+.+. .|. +.+.|.+.- ..-+.|+|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~---------~~~~kT~v~~~t~nP~Wn----e~f~~~~~~--~~~l~i~V 66 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG---------GQTHSTDVAKKTLDPKWN----EHFDLTVGP--SSIITIQV 66 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC---------ccceEccEEcCCCCCccc----ceEEEEeCC--CCEEEEEE
Confidence 345555556676666557799999999753 23444433221111 121 235555532 44567788
Q ss_pred EeCCCCCCc-ceeEEEEEeecc
Q 001565 282 VHLDLDPER-EVMMFRVMFNTA 302 (1052)
Q Consensus 282 ~h~~~~~~~-~~~mFr~~FnT~ 302 (1052)
|+.+..... ...|.++.|.-.
T Consensus 67 ~d~~~~~~~~d~~lG~~~i~l~ 88 (123)
T cd08382 67 FDQKKFKKKDQGFLGCVRIRAN 88 (123)
T ss_pred EECCCCCCCCCceEeEEEEEHH
Confidence 886542211 234555554433
No 93
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=46.84 E-value=93 Score=30.03 Aligned_cols=94 Identities=13% Similarity=0.223 Sum_probs=53.0
Q ss_pred CCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccC-
Q 001565 199 PERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQG- 275 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~G- 275 (1052)
....|.+.=|..++++..+..+.|.||++|+-... .+.++.|....+.. -.|. +.+.|.+.. .+.+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~-------~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~l~~~ 82 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-------KKKKFETKVHRKTLNPVFN----ETFTFKVPYSELGNK 82 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC-------CCCceecccCcCCCCCcee----eeEEEeCCHHHhCCC
Confidence 34567888888888887776788999999987531 12244443321111 1222 235565532 2333
Q ss_pred CeEEEEEeCCCCCCcceeEEEEEeecccc
Q 001565 276 DVVLECVHLDLDPEREVMMFRVMFNTAFI 304 (1052)
Q Consensus 276 DV~I~~~h~~~~~~~~~~mFr~~FnT~FI 304 (1052)
.+.|++++.+. ..+.+.|.++.|.-.-+
T Consensus 83 ~l~~~V~d~d~-~~~~~~lG~~~i~l~~~ 110 (124)
T cd08385 83 TLVFSVYDFDR-FSKHDLIGEVRVPLLTV 110 (124)
T ss_pred EEEEEEEeCCC-CCCCceeEEEEEecCcc
Confidence 46677887653 33445666666554433
No 94
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=46.82 E-value=50 Score=32.62 Aligned_cols=94 Identities=13% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccC
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQG 275 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~G 275 (1052)
+....|.++-|.-++++..+..+.|.||++|+-.+. ......+.|....+.+ ..|. +.+.|++.. .++.
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~-----~~~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~l~~ 82 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-----GKRLKKKKTTIKKRTLNPYYN----ESFSFEVPFEQIQK 82 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEEC-----CcccceeeccceeCCCCCccc----ceEEEECCHHHhCC
Confidence 344567888788888888777778999999997421 0011122232211111 1232 235566532 2333
Q ss_pred -CeEEEEEeCCCCCCcceeEEEEEeec
Q 001565 276 -DVVLECVHLDLDPEREVMMFRVMFNT 301 (1052)
Q Consensus 276 -DV~I~~~h~~~~~~~~~~mFr~~FnT 301 (1052)
.+.|++++.+. +++.+.|.++.|--
T Consensus 83 ~~l~~~v~d~~~-~~~~~~iG~~~i~~ 108 (136)
T cd08402 83 VHLIVTVLDYDR-IGKNDPIGKVVLGC 108 (136)
T ss_pred CEEEEEEEeCCC-CCCCceeEEEEECC
Confidence 46788888764 33445666666543
No 95
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=46.51 E-value=1.7e+02 Score=28.04 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=46.0
Q ss_pred eeEEEEEEeecCccCC---C-CccceEEEeeccCcccCCCCCccEEEeccccccccc-eecccCCcEEEEeeccc-ccCC
Q 001565 203 LSLDCVILRAIPNFDA---Q-NGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLR-HYRQADCDVIKIDIQCL-VQGD 276 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~---~-~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r-~y~~~d~~~i~i~i~~~-V~GD 276 (1052)
|.++=|.-++++..+. . +.|.||++|+-++ ..|.|....+.+. .|. +.+.|.+.-. ..-.
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~----------~~~kT~v~~~t~nPvWn----e~f~f~v~~~~~~~~ 68 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR----------RVFRTSWRRHTLNPVFN----ERLAFEVYPHEKNFD 68 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC----------EeEeeeeecCCCCCccc----ceEEEEEeCccCCCE
Confidence 5566667777776543 2 3499999998753 2444443222211 232 2245554211 1123
Q ss_pred eEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 277 VVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 277 V~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
+.|+||+.+. +++...|.++.|.-.
T Consensus 69 L~~~V~D~d~-~~~dd~IG~~~l~L~ 93 (108)
T cd04039 69 IQFKVLDKDK-FSFNDYVATGSLSVQ 93 (108)
T ss_pred EEEEEEECCC-CCCCcceEEEEEEHH
Confidence 5678888764 344566777766543
No 96
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=46.28 E-value=1.1e+02 Score=30.98 Aligned_cols=95 Identities=11% Similarity=0.158 Sum_probs=52.4
Q ss_pred CCCCceeEEEEEEeecCccC--CCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeeccccc
Q 001565 198 PPERALSLDCVILRAIPNFD--AQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQ 274 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~--~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~ 274 (1052)
+....|.+.-|..+++...+ ..+||.||++||-.... +..+ -..|....+.+ -.| ++.+.|++.-.--
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~----~k~~-kkkT~v~k~t~nPvf----NE~f~F~v~~~~L 82 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQN----AKLK-KKQTKRAKHKINPVW----NEMIMFELPSELL 82 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCC----cccc-eeccceeeCCCCCcc----ccEEEEECCHHHh
Confidence 45566888888888888776 34779999999965311 0000 01111111111 123 3457777743333
Q ss_pred C--CeEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 275 G--DVVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 275 G--DV~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
. .+.|.+++.+. .++.+.|.++.|...
T Consensus 83 ~~~~L~~~V~d~d~-~~~~d~iG~v~lg~~ 111 (138)
T cd08407 83 AASSVELEVLNQDS-PGQSLPLGRCSLGLH 111 (138)
T ss_pred CccEEEEEEEeCCC-CcCcceeceEEecCc
Confidence 3 35666777654 345567777777654
No 97
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=46.25 E-value=50 Score=33.22 Aligned_cols=93 Identities=12% Similarity=0.178 Sum_probs=52.3
Q ss_pred CCCCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEE--ecccccccc-ceecccCCcEEEEeeccc
Q 001565 196 WPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIF--SMSKKRKTL-RHYRQADCDVIKIDIQCL 272 (1052)
Q Consensus 196 ~pp~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lf--st~~~~~~~-r~y~~~d~~~i~i~i~~~ 272 (1052)
+.+....|.+.-|.-++++..+..+.|.||++||-... .+.+. .|....+.+ -.| ++.+.|++...
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~-------~~~~~k~kT~v~k~t~nP~~----nE~f~F~v~~~ 78 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQD-------GRKISKKKTSVKRDDTNPIF----NEAMIFSVPAI 78 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC-------CccccccCCccccCCCCCee----ceeEEEECCHH
Confidence 33555678888888999998877788999999987531 11111 111111110 123 23466766422
Q ss_pred -ccC-CeEEEEEeCCCCCCcceeEEEEEee
Q 001565 273 -VQG-DVVLECVHLDLDPEREVMMFRVMFN 300 (1052)
Q Consensus 273 -V~G-DV~I~~~h~~~~~~~~~~mFr~~Fn 300 (1052)
+.. -+.|.+++.+. .++...|.++.+-
T Consensus 79 ~l~~~~l~~~V~~~d~-~~~~~~iG~v~lg 107 (136)
T cd08406 79 VLQDLSLRVTVAESTE-DGKTPNVGHVIIG 107 (136)
T ss_pred HhCCcEEEEEEEeCCC-CCCCCeeEEEEEC
Confidence 322 24566677653 3445666666663
No 98
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=45.83 E-value=1.5e+02 Score=29.30 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=50.7
Q ss_pred CCCceeEEEEEEeecCccCCC-CccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccC
Q 001565 199 PERALSLDCVILRAIPNFDAQ-NGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQG 275 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~~-~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~G 275 (1052)
....|.++-+..++++..+.. +.|.||++||-... ++...-+.|....+.+ -.| ++.+.|++.. .+.+
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~-----~~~~~k~kT~v~~~t~nPvf----NE~F~f~v~~~~l~~ 83 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD-----KSHNSKRKTAVKKGTVNPVF----NETLKYVVEADLLSS 83 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC-----CcccceeecccccCCCCCcc----ceEEEEEcCHHHhCC
Confidence 446788888888888877764 88999999997521 1111122222211111 123 2346676632 3444
Q ss_pred -CeEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 276 -DVVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 276 -DV~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
.+.|.+++.+. +.+++.|..+.|.-+
T Consensus 84 ~~L~v~V~~~~~-~~~~~~lG~~~i~L~ 110 (128)
T cd08392 84 RQLQVSVWHSRT-LKRRVFLGEVLIPLA 110 (128)
T ss_pred cEEEEEEEeCCC-CcCcceEEEEEEEcC
Confidence 45566776553 234455555554443
No 99
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=45.21 E-value=2.2e+02 Score=27.90 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=54.0
Q ss_pred CCCceeEEEEEEeecCccCC-CCccceEEEeeccCcccCCCCCccEEEeccccccc-cceecccCCcEEEEeecc-cccC
Q 001565 199 PERALSLDCVILRAIPNFDA-QNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKT-LRHYRQADCDVIKIDIQC-LVQG 275 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~-~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~-~r~y~~~d~~~i~i~i~~-~V~G 275 (1052)
....|.++=|..++++..+. .+.|.||++||-.... .......|...... --.|. +.+.|++.. .+.+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~-----~~~~~~kT~v~~~t~nP~wn----E~f~f~i~~~~l~~ 83 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDK-----SRQSKRKTSIKRNTTNPVYN----ETLKYSISHSQLET 83 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCC-----ccccceEeeeeeCCCCCccc----ceEEEECCHHHhCC
Confidence 44567777788888877654 3679999999875210 00111122111111 11232 336666632 2333
Q ss_pred -CeEEEEEeCCCCCCcceeEEEEEeeccccc
Q 001565 276 -DVVLECVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 276 -DV~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
-+.|.|++.+. .++.+.|..+.|.-+-+.
T Consensus 84 ~~L~~~V~d~~~-~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 84 RTLQLSVWHYDR-FGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred CEEEEEEEECCC-CCCCcEEEEEEEeCCccc
Confidence 36788888764 345567777777766544
No 100
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=44.32 E-value=1.1e+02 Score=30.19 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCCCceeEEEEEEeecCccCCC-CccceEEEeecc
Q 001565 198 PPERALSLDCVILRAIPNFDAQ-NGCRPIIRIFGR 231 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~-~GcrP~l~Iy~~ 231 (1052)
.....|+++=|..++++..+.. +.|.||++|+-.
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~ 47 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLL 47 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEe
Confidence 3456788888888999988876 789999999754
No 101
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=44.28 E-value=1e+02 Score=29.42 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=22.1
Q ss_pred eeEEEEEEeecCccCCC-CccceEEEeecc
Q 001565 203 LSLDCVILRAIPNFDAQ-NGCRPIIRIFGR 231 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~-~GcrP~l~Iy~~ 231 (1052)
|+++=+.-++++..+.. +.|.||++|+-.
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~ 32 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFA 32 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEc
Confidence 55666666778777766 789999999875
No 102
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=43.79 E-value=1.8e+02 Score=27.80 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=25.5
Q ss_pred CCCceeEEEEEEeecCccC-CCCccceEEEeecc
Q 001565 199 PERALSLDCVILRAIPNFD-AQNGCRPIIRIFGR 231 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~-~~~GcrP~l~Iy~~ 231 (1052)
....|.+.-|.-++++..+ ..+.|.||++|+-.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~ 45 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLL 45 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEe
Confidence 3456777777778888877 56789999999864
No 103
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=43.61 E-value=1.8e+02 Score=28.22 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=49.4
Q ss_pred CCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccc-cceecccCCcEEEEeeccc-c-cCC
Q 001565 200 ERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKT-LRHYRQADCDVIKIDIQCL-V-QGD 276 (1052)
Q Consensus 200 ~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~-~r~y~~~d~~~i~i~i~~~-V-~GD 276 (1052)
...|.+.-+.-++++..+..+.|.||++|+-.+.. .....+.|...... --.|. +.+.|.+... + ...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-----~~~~~~~T~~~~~~~~P~wn----e~f~f~i~~~~l~~~~ 83 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGG-----KKLKKKKTSVKKGTLNPVFN----EAFSFDVPAEQLEEVS 83 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCC-----eEeeeecCcceecCCCCeee----eeEEEECCHHHhCCcE
Confidence 35677777777888877766789999999865310 01123333221111 11232 2255665322 2 456
Q ss_pred eEEEEEeCCCCCCcceeEEEEEeec
Q 001565 277 VVLECVHLDLDPEREVMMFRVMFNT 301 (1052)
Q Consensus 277 V~I~~~h~~~~~~~~~~mFr~~FnT 301 (1052)
+.|+||+.+.. .++..|.++.|.-
T Consensus 84 l~~~v~d~~~~-~~~~~lG~~~i~l 107 (134)
T cd00276 84 LVITVVDKDSV-GRNEVIGQVVLGP 107 (134)
T ss_pred EEEEEEecCCC-CCCceeEEEEECC
Confidence 77888887642 3344555554443
No 104
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=42.55 E-value=2e+02 Score=28.55 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=49.4
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccc-eecccCCcEEEEeeccc--cc
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLR-HYRQADCDVIKIDIQCL--VQ 274 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r-~y~~~d~~~i~i~i~~~--V~ 274 (1052)
+....|+++-|.-++++ ..++|.||++||-... ++ +.-+.|....+.+. .| ++.+.|++... -.
T Consensus 11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~----~k--~~k~kT~v~rktlnPvf----nE~f~F~v~~~~l~~ 77 (118)
T cd08677 11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVS----EG--QKEAQTALKKLALHTQW----EEELVFPLPEEESLD 77 (118)
T ss_pred CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCC----cC--ccEEEcceecCCCCCcc----ccEEEEeCCHHHhCC
Confidence 34456777777777777 2477999999997521 11 11223433322221 23 24477777432 23
Q ss_pred CCeEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 275 GDVVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 275 GDV~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
..+.|.+++.+. .++...|.++.+..+
T Consensus 78 ~tL~~~V~d~Dr-fs~~d~IG~v~l~l~ 104 (118)
T cd08677 78 GTLTLTLRCCDR-FSRHSTLGELRLKLA 104 (118)
T ss_pred cEEEEEEEeCCC-CCCCceEEEEEEccc
Confidence 345556666653 344556666655544
No 105
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=42.45 E-value=1.4e+02 Score=29.90 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=17.6
Q ss_pred EEEEEEeecCccCCCCccceEEEeeccC
Q 001565 205 LDCVILRAIPNFDAQNGCRPIIRIFGRN 232 (1052)
Q Consensus 205 L~~IiL~~iP~f~~~~GcrP~l~Iy~~~ 232 (1052)
++=|.-++++.. ..+.|.||++|+...
T Consensus 3 V~Vi~A~~L~~~-~~g~~dPyv~v~~~~ 29 (137)
T cd08675 3 VRVLECRDLALK-SNGTCDPFARVTLNY 29 (137)
T ss_pred EEEEEccCCCcc-cCCCCCcEEEEEEec
Confidence 333444455544 456799999999763
No 106
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=42.28 E-value=2e+02 Score=28.30 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=50.3
Q ss_pred CCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEE--Eecccccccc-ceecccCCcEEEEeecccccC
Q 001565 199 PERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMI--FSMSKKRKTL-RHYRQADCDVIKIDIQCLVQG 275 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~l--fst~~~~~~~-r~y~~~d~~~i~i~i~~~V~G 275 (1052)
....|++.-|.-++++..+..+.|.||++|+-... .+.+ +.|....+.. ..| ++.+.|.+...-..
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~-------~~~~~~~kT~v~k~t~nP~w----~e~F~f~v~~~~~~ 81 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYG-------KKRISKKKTHVKKCTLNPVF----NESFVFDIPSEELE 81 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcC-------CceeeeEcCccccCCCCCcc----CceEEEECCHHHhC
Confidence 34567888888888888777788999999987421 1111 2222111111 112 12356666432223
Q ss_pred C--eEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 276 D--VVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 276 D--V~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
+ +.|+||+.+. ..+.+.|.++.|...
T Consensus 82 ~~~l~~~v~d~d~-~~~~~~iG~~~~~~~ 109 (136)
T cd08404 82 DISVEFLVLDSDR-VTKNEVIGRLVLGPK 109 (136)
T ss_pred CCEEEEEEEECCC-CCCCccEEEEEECCc
Confidence 3 4457787664 334456666666443
No 107
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=41.84 E-value=1.8e+02 Score=28.39 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=48.9
Q ss_pred eeEEEEEEeecCccCC-CCccceEEEeeccCcccCCCCCccEEEeccccccccc-eecccCCcEEEEeecccccCCeEEE
Q 001565 203 LSLDCVILRAIPNFDA-QNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLR-HYRQADCDVIKIDIQCLVQGDVVLE 280 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~-~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r-~y~~~d~~~i~i~i~~~V~GDV~I~ 280 (1052)
|+++-+.-++++.++. .+.|.||+.|+-++ +.++.|....+.+. .| ++.+.|++... ...+.|.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~---------~~~~kT~v~~kt~~P~W----nE~F~f~v~~~-~~~l~~~ 67 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ---------EEVFRTKTVEKSLCPFF----GEDFYFEIPRT-FRHLSFY 67 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC---------ccEEEeeEEECCCCCcc----CCeEEEEcCCC-CCEEEEE
Confidence 4455555666776543 35799999998763 23555543222211 22 23355665321 2456677
Q ss_pred EEeCCCCCCcceeEEEEEeeccccc
Q 001565 281 CVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 281 ~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
+++.+. ..+...|-++.|...-+.
T Consensus 68 v~d~~~-~~~~~~iG~~~i~l~~l~ 91 (121)
T cd08401 68 IYDRDV-LRRDSVIGKVAIKKEDLH 91 (121)
T ss_pred EEECCC-CCCCceEEEEEEEHHHcc
Confidence 777664 234456777777655554
No 108
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=41.45 E-value=1.7e+02 Score=28.33 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=44.8
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|+++=|.-++++..+..+.|.||++|+.++ +.++.|....+.. ..| ++.+.|.+.- -.--+.|+|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~---------~~~~kT~v~~~t~nP~W----ne~f~~~~~~-~~~~l~v~v 67 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN---------EVIIRTATVWKTLNPFW----GEEYTVHLPP-GFHTVSFYV 67 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC---------EeeeeeeeEcCCCCCcc----cceEEEeeCC-CCCEEEEEE
Confidence 455556666777777678899999999764 2344443221111 112 1234454421 011345566
Q ss_pred EeCCCCCCcceeEEEEEeec
Q 001565 282 VHLDLDPEREVMMFRVMFNT 301 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT 301 (1052)
++.+. .++...|.++.|.-
T Consensus 68 ~d~~~-~~~d~~iG~~~~~~ 86 (121)
T cd04054 68 LDEDT-LSRDDVIGKVSLTR 86 (121)
T ss_pred EECCC-CCCCCEEEEEEEcH
Confidence 66553 23445677776663
No 109
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=41.30 E-value=4e+02 Score=27.12 Aligned_cols=120 Identities=8% Similarity=0.056 Sum_probs=62.0
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccc--ccceecccCCcEEEEeecccccCCeEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRK--TLRHYRQADCDVIKIDIQCLVQGDVVLE 280 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~--~~r~y~~~d~~~i~i~i~~~V~GDV~I~ 280 (1052)
|++.=|.-++++..+..+.|.||++|+-++. .+.|..... .--.|. +.+.|.+.-...--+.|+
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~----------~~kTk~~~~~t~nP~WN----E~F~f~v~~~~~~~l~v~ 67 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ----------VLRTRPSQTRNGNPSWN----EELMFVAAEPFEDHLILS 67 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCE----------EeeeEeccCCCCCCccc----CcEEEEecCccCCeEEEE
Confidence 3444555667777776788999999998741 222321111 111232 235555422222345677
Q ss_pred EEeCCCCCCcceeEEEEEeecccccCC---------eEEEecC-CCCccccccCCCCCCcEEEEEEec
Q 001565 281 CVHLDLDPEREVMMFRVMFNTAFIRSN---------ILMLNSE-NLDILWDSKERYPKGFRAEVLFGD 338 (1052)
Q Consensus 281 ~~h~~~~~~~~~~mFr~~FnT~FI~~n---------~L~l~k~-eLD~~~~~k~~fp~dF~Vel~F~~ 338 (1052)
+++.+. ..+...|.++.|.-.-|..+ -+.|.+. .++. .+.+.+..-..+|+|.|..
T Consensus 68 V~d~~~-~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 68 VEDRVG-PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEecC-CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEEEEEecC
Confidence 777553 23456777777776655321 1222221 1111 0123456677888888864
No 110
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=41.05 E-value=2e+02 Score=28.72 Aligned_cols=92 Identities=8% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEE--Eecccccccc-ceecccCCcEEEEeecc-cc
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMI--FSMSKKRKTL-RHYRQADCDVIKIDIQC-LV 273 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~l--fst~~~~~~~-r~y~~~d~~~i~i~i~~-~V 273 (1052)
+....|.+.-|..++++..+ .++|.+|++|+-... .+.+ ..|....... -.| ++.+.|++.- .+
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~-------~~~~~~~kT~v~~~~~nP~f----nE~F~f~i~~~~l 79 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH-------NKVVKTKKTEVVDGAASPSF----NESFSFKVTSRQL 79 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC-------CEEeeeeecccEeCCCCCcc----cceEEEECCHHHh
Confidence 34466888888888888877 778999999985421 1111 1111110000 122 2346676632 23
Q ss_pred c-CCeEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 274 Q-GDVVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 274 ~-GDV~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
. --+.|++++.+. +.+++.|.++.+.-.
T Consensus 80 ~~~~L~~~V~~~~~-~~~~~~lG~v~ig~~ 108 (137)
T cd08409 80 DTASLSLSVMQSGG-VRKSKLLGRVVLGPF 108 (137)
T ss_pred CccEEEEEEEeCCC-CCCcceEEEEEECCc
Confidence 3 235667777654 455677888877643
No 111
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=40.00 E-value=2.4e+02 Score=26.85 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=46.9
Q ss_pred eeEEEEEEeecCccCCC-CccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEE
Q 001565 203 LSLDCVILRAIPNFDAQ-NGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLE 280 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~-~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~ 280 (1052)
|.++=+.-++++..+.. +.+.||++|+..+. ...+.|....+.. ..|. +.+.|.+. ....-+.|+
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--------~~~~kT~~~~~~~~P~Wn----e~~~~~v~-~~~~~l~~~ 70 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--------RELARTKVKKDTSNPVWN----ETKYILVN-SLTEPLNLT 70 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC--------CcceEeeeecCCCCCcce----EEEEEEeC-CCCCEEEEE
Confidence 44444444556643322 44899999998741 1233332211111 1222 23555555 345567778
Q ss_pred EEeCCCCCCcceeEEEEEeeccccc
Q 001565 281 CVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 281 ~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
|++.+.. .....|.++.|.-.=+.
T Consensus 71 v~d~~~~-~~d~~iG~~~~~l~~l~ 94 (124)
T cd04044 71 VYDFNDK-RKDKLIGTAEFDLSSLL 94 (124)
T ss_pred EEecCCC-CCCceeEEEEEEHHHhc
Confidence 8887643 34567777777755443
No 112
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=39.93 E-value=1.5e+02 Score=28.09 Aligned_cols=87 Identities=9% Similarity=0.165 Sum_probs=47.7
Q ss_pred eEEEEEEeecCccCC-CCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cc-cCCeEE
Q 001565 204 SLDCVILRAIPNFDA-QNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LV-QGDVVL 279 (1052)
Q Consensus 204 ~L~~IiL~~iP~f~~-~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V-~GDV~I 279 (1052)
.++=|.-++++..+. .+.|.||++|+-++ ..+.|....+.+ ..|+ ++.+.|.+.. .+ ..-+.|
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~----------~~~kT~v~~~~~nP~W~---ne~f~f~i~~~~l~~~~l~i 68 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS----------TTYKTDVVKKSLNPVWN---SEWFRFEVDDEELQDEPLQI 68 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC----------eeEecceecCCCCCccc---CcEEEEEcChHHcCCCeEEE
Confidence 445556667787764 46799999999863 234343321111 1231 2235566532 23 245778
Q ss_pred EEEeCCCCCCcceeEEEEEeecccc
Q 001565 280 ECVHLDLDPEREVMMFRVMFNTAFI 304 (1052)
Q Consensus 280 ~~~h~~~~~~~~~~mFr~~FnT~FI 304 (1052)
+||+.+. .++...|.++.+.-.-+
T Consensus 69 ~V~d~d~-~~~~~~iG~~~~~l~~l 92 (110)
T cd08688 69 RVMDHDT-YSANDAIGKVYIDLNPL 92 (110)
T ss_pred EEEeCCC-CCCCCceEEEEEeHHHh
Confidence 8888753 33445666666655443
No 113
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=37.37 E-value=1.2e+02 Score=30.52 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=53.3
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEE--Eecccccccc-ceecccCCcEEEEeeccc-c
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMI--FSMSKKRKTL-RHYRQADCDVIKIDIQCL-V 273 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~l--fst~~~~~~~-r~y~~~d~~~i~i~i~~~-V 273 (1052)
.....|.+.=|..++++..+..+.|.+|++|+-... ..+.+ +.|....+.. -.| ++.+.|++... +
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~------~~~~~~~~kT~v~~~t~nPvf----nEtF~f~i~~~~l 81 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNS------DGQEISKSKTSIRRGQPDPEF----KETFVFQVALFQL 81 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeC------CCcceeeccceeecCCCCCcE----eeeEEEECCHHHh
Confidence 344668888888888888877788999999987521 01112 1222111111 123 23466766432 2
Q ss_pred cC-CeEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 274 QG-DVVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 274 ~G-DV~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
.. .+.|.+++.+. ..+++.|.++.|.-.
T Consensus 82 ~~~~L~~~V~~~~~-~~~~~~iG~v~l~~~ 110 (138)
T cd08408 82 SEVTLMFSVYNKRK-MKRKEMIGWFSLGLN 110 (138)
T ss_pred CccEEEEEEEECCC-CCCCcEEEEEEECCc
Confidence 22 34557777664 455667777776543
No 114
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=36.70 E-value=3.4e+02 Score=26.29 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=56.5
Q ss_pred EEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeeccc--ccCCeEEEEEeCC
Q 001565 209 ILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCL--VQGDVVLECVHLD 285 (1052)
Q Consensus 209 iL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~--V~GDV~I~~~h~~ 285 (1052)
..++++. ..+.|.||++|+-++. .+.|....+.. -.|. +.+.|.+.-. -...+.|+||+.+
T Consensus 4 ~a~~L~~--~~g~~Dpyv~v~~~~~----------~~kT~v~~~~~nP~Wn----e~f~f~~~~~~~~~~~l~~~v~d~~ 67 (127)
T cd08373 4 SLKNLPG--LKGKGDRIAKVTFRGV----------KKKTRVLENELNPVWN----ETFEWPLAGSPDPDESLEIVVKDYE 67 (127)
T ss_pred EeeCCcc--cCCCCCCEEEEEECCE----------eeecceeCCCcCCccc----ceEEEEeCCCcCCCCEEEEEEEECC
Confidence 3445555 2467999999998641 23332211111 1222 2355665322 2345667788775
Q ss_pred CCCCcceeEEEEEeecccccC-CeEEEecCCCCccccccCCCCCCcEEEEEEecCCCCC
Q 001565 286 LDPEREVMMFRVMFNTAFIRS-NILMLNSENLDILWDSKERYPKGFRAEVLFGDVESIS 343 (1052)
Q Consensus 286 ~~~~~~~~mFr~~FnT~FI~~-n~L~l~k~eLD~~~~~k~~fp~dF~Vel~F~~~~~~~ 343 (1052)
. ..+...|.++.|.-.=+.. +.......=+|. ..+.......+++.|.+.+..-
T Consensus 68 ~-~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~---~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 68 K-VGRNRLIGSATVSLQDLVSEGLLEVTEPLLDS---NGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred C-CCCCceEEEEEEEhhHcccCCceEEEEeCcCC---CCCcccEEEEEEEEEeCCCCcc
Confidence 4 2344677777777554432 221111111121 1122334566777777766543
No 115
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=36.59 E-value=1.6e+02 Score=33.73 Aligned_cols=102 Identities=12% Similarity=0.097 Sum_probs=60.6
Q ss_pred eeCcEEEEecCCCCCCCCc---ccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCC
Q 001565 19 FIERVYVFDSCFSTEVVPD---GMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGC 95 (1052)
Q Consensus 19 IT~RIiam~~~fPae~~~E---~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~ 95 (1052)
+-.+|++| |.+.+..+. +.|=.. .|+-.+|.+. .-.|+..+.. | .+++-.|.+.|
T Consensus 92 ~kkEIV~l--g~~ddv~p~~~vG~yl~p-~~wn~~l~D~----~~vviDtRN~-Y----E~~iG~F~gAv---------- 149 (308)
T COG1054 92 LKKEIVAL--GVEDDVDPLENVGTYLSP-KDWNELLSDP----DVVVIDTRND-Y----EVAIGHFEGAV---------- 149 (308)
T ss_pred ehhhheec--CCCCCcCccccccCccCH-HHHHHHhcCC----CeEEEEcCcc-e----eEeeeeecCcc----------
Confidence 45689999 666533322 555544 4555555543 5666665542 2 12233343333
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 96 PLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 96 P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
.|..+.-.+|-..+++++..... -=||+.|.+|- | .=-.++||+..|
T Consensus 150 -~p~~~tFrefP~~v~~~~~~~~~-KkVvmyCTGGI-R--CEKas~~m~~~G 196 (308)
T COG1054 150 -EPDIETFREFPAWVEENLDLLKD-KKVVMYCTGGI-R--CEKASAWMKENG 196 (308)
T ss_pred -CCChhhhhhhHHHHHHHHHhccC-CcEEEEcCCce-e--ehhhHHHHHHhc
Confidence 34688888888888888876444 34999999885 5 244566766544
No 116
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=36.46 E-value=1.2e+02 Score=34.24 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhhC---CC-ccEEEEEecCCCcch
Q 001565 99 PMSLIQHFLRVCEHWLLLG---DH-QNVILLHSERGGWPL 134 (1052)
Q Consensus 99 ~L~~L~~~c~~~~~WL~~d---~~-~NVvvVHCk~GkgRt 134 (1052)
..+++.++..-++.||-.- .+ +=+|+|=|.+|+-|.
T Consensus 218 ~~ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRS 257 (286)
T COG1660 218 VEEFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRS 257 (286)
T ss_pred HHHHHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccch
Confidence 4566777777777777542 22 127899999999995
No 117
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=36.40 E-value=2.3e+02 Score=26.94 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=15.4
Q ss_pred cHHHHHHHHhhhCCCCcEEEEeecCC
Q 001565 43 YLHEILTELHEEFPDSAFLAFNFREG 68 (1052)
Q Consensus 43 ~i~dV~~~L~~~h~~~~y~V~NLs~~ 68 (1052)
..+++.+.|+.... ..+|+.++..
T Consensus 5 s~~~l~~~~~~~~~--~~~iiDvR~~ 28 (113)
T cd01531 5 SPAQLKGWIRNGRP--PFQVVDVRDE 28 (113)
T ss_pred CHHHHHHHHHcCCC--CEEEEEcCCc
Confidence 45677777655322 4778888765
No 118
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=36.13 E-value=1.7e+02 Score=28.89 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=27.1
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeecc
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGR 231 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~ 231 (1052)
+....|.+.=|..+++...+..+.|.+|++||--
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Ll 44 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALL 44 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEc
Confidence 4456678877888888887777889999999954
No 119
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=36.06 E-value=3.1e+02 Score=26.72 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=52.6
Q ss_pred CceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEee-cc-cccCC-
Q 001565 201 RALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDI-QC-LVQGD- 276 (1052)
Q Consensus 201 ~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i-~~-~V~GD- 276 (1052)
..|+++=|..++++..+ .+.|.||++|+-.... ....-+.|....+.. -.|. +.+.|++ .. .+.+.
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~-----~~~~~~kT~v~~~~~nP~wn----E~F~f~~~~~~~l~~~~ 82 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDP-----QKTTKRKTKVVRKTRNPTFN----EMLVYDGLPVEDLQQRV 82 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCC-----ccCCceeCCccCCCCCCCcc----cEEEEecCChHHhCCCE
Confidence 45777778888888888 7789999999875311 001122222211111 1232 3466665 22 34443
Q ss_pred eEEEEEeCCCCCCcceeEEEEEeeccccc
Q 001565 277 VVLECVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 277 V~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
+.|++++.+. +.+.+.|.++.|+-.-+.
T Consensus 83 L~~~V~d~d~-~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 83 LQVSVWSHDS-LVENEFLGGVCIPLKKLD 110 (122)
T ss_pred EEEEEEeCCC-CcCCcEEEEEEEeccccc
Confidence 4467777654 344566777777665444
No 120
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=35.90 E-value=2.7e+02 Score=26.67 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=21.0
Q ss_pred eeEEEEEEeecCccCC--CCccceEEEeeccC
Q 001565 203 LSLDCVILRAIPNFDA--QNGCRPIIRIFGRN 232 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~--~~GcrP~l~Iy~~~ 232 (1052)
|++.-+.-++++..+. .+.|.||++|+.++
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~ 34 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA 34 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECC
Confidence 4455555566776665 57899999999753
No 121
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=35.39 E-value=3.6e+02 Score=25.74 Aligned_cols=96 Identities=7% Similarity=0.073 Sum_probs=51.3
Q ss_pred eeEEEEEEeecCccC--CCCccceEEEeeccCcccCCCCCccEEEeccccccc--cceecccCCcEEEEeecccccCCeE
Q 001565 203 LSLDCVILRAIPNFD--AQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKT--LRHYRQADCDVIKIDIQCLVQGDVV 278 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~--~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~--~r~y~~~d~~~i~i~i~~~V~GDV~ 278 (1052)
|+++=|.-++++..+ ..+.++||++|+-.+... . ....+.|...... --.| ++.+.|.+...-...+.
T Consensus 4 l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~---~-~~~~~kT~~~~~~~~~P~w----~e~f~f~~~~~~~~~l~ 75 (128)
T cd00275 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPA---D-DSAKFKTKVVKNNGFNPVW----NETFEFDVTVPELAFLR 75 (128)
T ss_pred EEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCC---C-CCCcEeeeeecCCCcCCcc----CCcEEEEEeCCCeEEEE
Confidence 445555555677666 357889999998753210 0 1122333221111 1122 12355665432233577
Q ss_pred EEEEeCCCCCCcceeEEEEEeecccccCCe
Q 001565 279 LECVHLDLDPEREVMMFRVMFNTAFIRSNI 308 (1052)
Q Consensus 279 I~~~h~~~~~~~~~~mFr~~FnT~FI~~n~ 308 (1052)
|.||+.+.. +...|.++.+.-.-+.++.
T Consensus 76 ~~V~d~~~~--~~~~iG~~~~~l~~l~~g~ 103 (128)
T cd00275 76 FVVYDEDSG--DDDFLGQACLPLDSLRQGY 103 (128)
T ss_pred EEEEeCCCC--CCcEeEEEEEEhHHhcCce
Confidence 888887653 5567777777777665543
No 122
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=34.88 E-value=3.1e+02 Score=25.96 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=47.2
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|.++=+.-++++..+..+.|.||++|+..+. .+.|....+.. ..|. +.+.|.+. .+..-+.|+|
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~----------~~~T~~~~~t~nP~W~----e~f~~~~~-~~~~~l~~~v 67 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNA----------RLQTHTIYKTLNPEWN----KIFTFPIK-DIHDVLEVTV 67 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECCE----------eeecceecCCcCCccC----cEEEEEec-CcCCEEEEEE
Confidence 4444455556776665678999999998641 23332211110 1121 22445442 1344566777
Q ss_pred EeCCCCCCcceeEEEEEeeccccc
Q 001565 282 VHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
|+.+. ..+...|.++.|.-.-+.
T Consensus 68 ~d~~~-~~~~~~iG~~~~~l~~~~ 90 (119)
T cd08377 68 YDEDK-DKKPEFLGKVAIPLLSIK 90 (119)
T ss_pred EECCC-CCCCceeeEEEEEHHHCC
Confidence 87653 234567878877766554
No 123
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=34.62 E-value=86 Score=29.92 Aligned_cols=73 Identities=10% Similarity=0.016 Sum_probs=36.2
Q ss_pred cHHHHHHHHhhhC---CCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCC
Q 001565 43 YLHEILTELHEEF---PDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDH 119 (1052)
Q Consensus 43 ~i~dV~~~L~~~h---~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~ 119 (1052)
..+++.+.|++.. .+ +++|+..++.++ .. .+.+. ..+.| +..+...+.....++..+..
T Consensus 5 s~~el~~~l~~~~~~~~~-~~~iiDvR~~ef-----------~~--ghipg-Ai~ip---~~~~~~~~~~~~~~~~~~~~ 66 (113)
T cd01443 5 SPEELVALLENSDSNAGK-DFVVVDLRRDDY-----------EG--GHIKG-SINLP---AQSCYQTLPQVYALFSLAGV 66 (113)
T ss_pred CHHHHHHHHhCCccccCC-cEEEEECCchhc-----------CC--CcccC-ceecc---hhHHHHHHHHHHHHhhhcCC
Confidence 3457777776531 12 578888775411 10 01111 11233 44343333333333433444
Q ss_pred ccEEEEEecCCCcch
Q 001565 120 QNVILLHSERGGWPL 134 (1052)
Q Consensus 120 ~NVvvVHCk~GkgRt 134 (1052)
..||+||..|+.|.
T Consensus 67 -~~iv~~C~~~g~rs 80 (113)
T cd01443 67 -KLAIFYCGSSQGRG 80 (113)
T ss_pred -CEEEEECCCCCccc
Confidence 57999999765563
No 124
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=34.34 E-value=1.8e+02 Score=27.83 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=26.2
Q ss_pred CCCceeEEEEEEeecCccCCCCccceEEEeeccC
Q 001565 199 PERALSLDCVILRAIPNFDAQNGCRPIIRIFGRN 232 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~ 232 (1052)
....|+++=|.-++++..+..+.|.||++|+-.+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~ 47 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLP 47 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEcc
Confidence 3456777777777888777677899999999753
No 125
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=34.08 E-value=1.8e+02 Score=30.02 Aligned_cols=95 Identities=8% Similarity=-0.022 Sum_probs=53.7
Q ss_pred CCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEee-c-ccccC-
Q 001565 200 ERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDI-Q-CLVQG- 275 (1052)
Q Consensus 200 ~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i-~-~~V~G- 275 (1052)
...|+++-|.-++++..+..+.|.||++|+-... ......+.|....+.. -.|. +.+.|.+ . -.+..
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-----~~~~~~~kT~vi~~t~nP~Wn----E~f~f~~~~~~~l~~~ 96 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-----KSKKSKQKTPVVKKSVNPVWN----HTFVYDGVSPEDLSQA 96 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-----CCCCcceeCCccCCCCCCCCC----CEEEEecCCHHHhCCC
Confidence 3557777788888888777788999999976421 1112234443221111 1222 2355553 1 12333
Q ss_pred CeEEEEEeCCCCCCcceeEEEEEeecccc
Q 001565 276 DVVLECVHLDLDPEREVMMFRVMFNTAFI 304 (1052)
Q Consensus 276 DV~I~~~h~~~~~~~~~~mFr~~FnT~FI 304 (1052)
.+.|+||+.+. +.+...|.++.|+-+=+
T Consensus 97 ~L~i~V~d~d~-~~~d~~lG~v~i~l~~~ 124 (162)
T cd04020 97 CLELTVWDHDK-LSSNDFLGGVRLGLGTG 124 (162)
T ss_pred EEEEEEEeCCC-CCCCceEEEEEEeCCcc
Confidence 36778888764 34456777777776543
No 126
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=33.74 E-value=3.5e+02 Score=27.50 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=46.0
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|+++=|.-++++..+. +.|.||++|+-++. .+.|....+.. ..|. +.+.|.+.-. ..-+.|+|
T Consensus 4 L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~----------~~kT~vvk~t~nP~Wn----E~f~f~i~~~-~~~l~~~V 67 (145)
T cd04038 4 LKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQ----------KVKTRVIKKNLNPVWN----EELTLSVPNP-MAPLKLEV 67 (145)
T ss_pred EEEEEEeeECCCCCCC-CCcCcEEEEEECCE----------EEEeeeEcCCCCCeec----ccEEEEecCC-CCEEEEEE
Confidence 3444444445665554 78999999987631 23332211111 1232 2255665432 55678889
Q ss_pred EeCCCCCCcceeEEEEEeecc
Q 001565 282 VHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
|+.+. ..+...|.++.|...
T Consensus 68 ~D~d~-~~~dd~iG~a~i~l~ 87 (145)
T cd04038 68 FDKDT-FSKDDSMGEAEIDLE 87 (145)
T ss_pred EECCC-CCCCCEEEEEEEEHH
Confidence 98764 344567877777654
No 127
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=33.56 E-value=3e+02 Score=26.69 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=43.3
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|.+.-|.-++++..+..+.|.||++|+.++ +.++.|....... ..|. +.+.|.+.-. .--+.|+|
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~---------~~~~kT~~~~~t~~P~Wn----e~f~~~v~~~-~~~L~v~v 68 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNG---------IVKGRTVTISNTLNPVWD----EVLYVPVTSP-NQKITLEV 68 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECC---------EEeeceeEECCCcCCccC----ceEEEEecCC-CCEEEEEE
Confidence 344444555667666567899999999863 2344443211111 1222 2244444211 12455677
Q ss_pred EeCCCCCCcceeEEEEEeec
Q 001565 282 VHLDLDPEREVMMFRVMFNT 301 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT 301 (1052)
++.+. ..+...|.++.|.-
T Consensus 69 ~d~~~-~~~d~~IG~~~~~l 87 (120)
T cd04045 69 MDYEK-VGKDRSLGSVEINV 87 (120)
T ss_pred EECCC-CCCCCeeeEEEEeH
Confidence 76653 23345666666653
No 128
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=33.24 E-value=1.7e+02 Score=27.03 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhCCCCcEEEEeecCC
Q 001565 44 LHEILTELHEEFPDSAFLAFNFREG 68 (1052)
Q Consensus 44 i~dV~~~L~~~h~~~~y~V~NLs~~ 68 (1052)
.+++.+.|++.+. ...|..++..
T Consensus 4 ~~~l~~~~~~~~~--~~~iiDvR~~ 26 (101)
T cd01528 4 VAELAEWLADERE--EPVLIDVREP 26 (101)
T ss_pred HHHHHHHHhcCCC--CCEEEECCCH
Confidence 4566677766433 3678888654
No 129
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=33.00 E-value=3.6e+02 Score=26.29 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=27.9
Q ss_pred CCCCceeEEEEEEeecCccCCCCccceEEEeecc
Q 001565 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGR 231 (1052)
Q Consensus 198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~ 231 (1052)
.....|.++=|..++++..+..+.|.+|++++..
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~ll 46 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLL 46 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEc
Confidence 4456788888999999988877888999998764
No 130
>PLN02160 thiosulfate sulfurtransferase
Probab=31.66 E-value=54 Score=32.86 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=14.3
Q ss_pred cEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 121 NVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 121 NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
.-|||||..| .|. .++|..|...|
T Consensus 82 ~~IivyC~sG-~RS--~~Aa~~L~~~G 105 (136)
T PLN02160 82 DDILVGCQSG-ARS--LKATTELVAAG 105 (136)
T ss_pred CcEEEECCCc-HHH--HHHHHHHHHcC
Confidence 3499999877 463 44444444333
No 131
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=30.97 E-value=2.5e+02 Score=27.94 Aligned_cols=75 Identities=7% Similarity=-0.040 Sum_probs=39.4
Q ss_pred ecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEee-cccccCCeEEEEEeCCCCCC
Q 001565 212 AIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDI-QCLVQGDVVLECVHLDLDPE 289 (1052)
Q Consensus 212 ~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i-~~~V~GDV~I~~~h~~~~~~ 289 (1052)
+++. +..+.+.||++|+.++. ++.|....+.. -.|. +.|.|.. .......+.|+|++.+. .+
T Consensus 39 ~L~~-d~~g~~DPYVkV~~~~~----------~~kT~vi~~t~nPvWN----E~F~f~~~~~~~~~~L~v~V~D~d~-~s 102 (127)
T cd04032 39 GLWG-DYFTSTDGYVKVFFGGQ----------EKRTEVIWNNNNPRWN----ATFDFGSVELSPGGKLRFEVWDRDN-GW 102 (127)
T ss_pred CCCc-CcCCCCCeEEEEEECCc----------cccCceecCCCCCcCC----CEEEEecccCCCCCEEEEEEEeCCC-CC
Confidence 4442 33467899999998642 33332211110 1222 2344542 22235567788888764 23
Q ss_pred cceeEEEEEeecc
Q 001565 290 REVMMFRVMFNTA 302 (1052)
Q Consensus 290 ~~~~mFr~~FnT~ 302 (1052)
+.+.|.++.|.-.
T Consensus 103 ~dd~IG~~~i~l~ 115 (127)
T cd04032 103 DDDLLGTCSVVPE 115 (127)
T ss_pred CCCeeEEEEEEec
Confidence 4566777766554
No 132
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=30.85 E-value=2.2e+02 Score=27.98 Aligned_cols=94 Identities=10% Similarity=0.175 Sum_probs=50.8
Q ss_pred CCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-ccc-C
Q 001565 199 PERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQ-G 275 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~-G 275 (1052)
....|.+.-|..++++..+..+.|.||++|+-... +. ....+.|....+.. -.| ++.+.|.+.. .+. .
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~----~~-~~~~~kT~v~~~t~~P~w----ne~F~f~i~~~~~~~~ 83 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYK----DK-RVEKKKTVIKKRTLNPVF----NESFIFNIPLERLRET 83 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeC----CC-ccccccCcceeCCCCCcc----cceEEEeCCHHHhCCC
Confidence 44568888888888887777788999999986310 00 01122222111110 122 1235565532 232 3
Q ss_pred CeEEEEEeCCCCCCcceeEEEEEeecc
Q 001565 276 DVVLECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 276 DV~I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
-+.|+|++.+. .++.+.|.++.|...
T Consensus 84 ~l~~~v~d~~~-~~~~~~lG~~~i~~~ 109 (136)
T cd08405 84 TLIITVMDKDR-LSRNDLIGKIYLGWK 109 (136)
T ss_pred EEEEEEEECCC-CCCCcEeEEEEECCc
Confidence 46778888753 344556767666543
No 133
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=30.83 E-value=4.6e+02 Score=24.65 Aligned_cols=84 Identities=10% Similarity=0.014 Sum_probs=42.7
Q ss_pred eEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccceecccCCcEEEEeecccccCCeEE--EE
Q 001565 204 SLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVL--EC 281 (1052)
Q Consensus 204 ~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV~I--~~ 281 (1052)
+++=|.-++++.. +.|.||++|+.++ +.++.|......--.|. +.+.|++.-.-.++..| .+
T Consensus 3 ~v~vi~a~~l~~~---~~~dpyv~v~~~~---------~~~~kT~~~~~~~P~Wn----e~f~f~v~~~~~~~~~l~i~v 66 (117)
T cd08383 3 RLRILEAKNLPSK---GTRDPYCTVSLDQ---------VEVARTKTVEKLNPFWG----EEFVFDDPPPDVTFFTLSFYN 66 (117)
T ss_pred EEEEEEecCCCcC---CCCCceEEEEECC---------EEeEecceEECCCCccc----ceEEEecCCccccEEEEEEEE
Confidence 3443444455543 6899999999864 33455543221111222 23556553222243444 44
Q ss_pred EeCCCCCCcceeEEEEEeecccc
Q 001565 282 VHLDLDPEREVMMFRVMFNTAFI 304 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~FnT~FI 304 (1052)
++.+. ......+.++.++...+
T Consensus 67 ~d~~~-~~~~~~~g~v~l~~~~~ 88 (117)
T cd08383 67 KDKRS-KDRDIVIGKVALSKLDL 88 (117)
T ss_pred Eeccc-CCCeeEEEEEEecCcCC
Confidence 44432 23445677777776665
No 134
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=30.49 E-value=4.4e+02 Score=25.30 Aligned_cols=86 Identities=8% Similarity=0.058 Sum_probs=43.3
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLEC 281 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~ 281 (1052)
|++.=+.-++++..+..+.+.||++|+..+. .+.++.|....+.+ ..|. +.+.|.+...-..-+.|+|
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-------~~~~~kT~~~~~t~~P~Wn----e~f~f~i~~~~~~~L~i~v 71 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDTNG-------KRRIAKTRTIYDTLNPRWD----EEFELEVPAGEPLWISATV 71 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEECCC-------CeeeecccEecCCCCCccc----ceEEEEcCCCCCCEEEEEE
Confidence 4455555566776665667889999986531 13345443322111 1221 2255554322223355677
Q ss_pred EeCCCCCCcceeEEEEEee
Q 001565 282 VHLDLDPEREVMMFRVMFN 300 (1052)
Q Consensus 282 ~h~~~~~~~~~~mFr~~Fn 300 (1052)
++.+. .++...|.++.|.
T Consensus 72 ~d~d~-~~~~~~iG~~~i~ 89 (126)
T cd04043 72 WDRSF-VGKHDLCGRASLK 89 (126)
T ss_pred EECCC-CCCCceEEEEEEe
Confidence 77653 2234455555554
No 135
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=28.89 E-value=3.2e+02 Score=27.92 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=19.2
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccC
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRN 232 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~ 232 (1052)
|+++=|.-++++. ..|.|.||++|+-.+
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~ 29 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIY 29 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeC
Confidence 4444555556665 357799999998864
No 136
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=28.77 E-value=4.9e+02 Score=24.34 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=47.0
Q ss_pred EEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccc-eecccCCcEEEEeecccc-----cCCeEEE
Q 001565 207 CVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLR-HYRQADCDVIKIDIQCLV-----QGDVVLE 280 (1052)
Q Consensus 207 ~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r-~y~~~d~~~i~i~i~~~V-----~GDV~I~ 280 (1052)
.|.-++++..+..+.|.||++||..+. +.....++.|....+.+. .|. .+.|.+. .+ .--+.|+
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~----~~~~~~~~kT~vi~~t~nP~Wn-----~f~~~~~-~l~~~~~~~~l~~~ 75 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSE----DGTWVLVYRTEVIKNTLNPVWK-----PFTIPLQ-KLCNGDYDRPIKIE 75 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECC----CCCEEEEEeeeEeccCCCCceE-----EEEEEHH-HhcCCCcCCEEEEE
Confidence 455566666665678999999997531 112334566543222211 222 1333322 12 2346678
Q ss_pred EEeCCCCCCcceeEEEEEeeccccc
Q 001565 281 CVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 281 ~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
||+.+. .++...|.++.+.-.-|.
T Consensus 76 V~d~d~-~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 76 VYDYDS-SGKHDLIGEFETTLDELL 99 (110)
T ss_pred EEEeCC-CCCCcEEEEEEEEHHHHh
Confidence 887764 344567777777655443
No 137
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=27.87 E-value=4e+02 Score=22.98 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=44.7
Q ss_pred EEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEEEeCCCC
Q 001565 209 ILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLECVHLDLD 287 (1052)
Q Consensus 209 iL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~~h~~~~ 287 (1052)
..+++.......-|++|++|+..+ ...+.|....+.. -.| ++.+.|++.......+.|++++.+..
T Consensus 7 ~~~~l~~~~~~~~~~~~v~v~~~~---------~~~~~T~~~~~~~~P~w----~~~~~~~~~~~~~~~l~i~v~~~~~~ 73 (102)
T cd00030 7 EARNLPAKDLNGKSDPYVKVSLGG---------KQKFKTKVVKNTLNPVW----NETFEFPVLDPESDTLTVEVWDKDRF 73 (102)
T ss_pred eeeCCCCcCCCCCCCcEEEEEecc---------CceEecceeCCCCCCcc----cceEEEEccCCCCCEEEEEEEecCCC
Confidence 333444333345689999998874 2344443322111 112 12245555443456677888887643
Q ss_pred CCcceeEEEEEeeccccc
Q 001565 288 PEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 288 ~~~~~~mFr~~FnT~FI~ 305 (1052)
...+.|.++.++..-+.
T Consensus 74 -~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 74 -SKDDFLGEVEIPLSELL 90 (102)
T ss_pred -CCCceeEEEEEeHHHhh
Confidence 23456777777665554
No 138
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=27.81 E-value=2.7e+02 Score=29.80 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhCCCccEEEEEecCCCcch--HHHHHHHHHHHhc
Q 001565 104 QHFLRVCEHWLLLGDHQNVILLHSERGGWPL--LAFLLASLLIFRK 147 (1052)
Q Consensus 104 ~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt--~g~mia~yLly~~ 147 (1052)
.+.++.+..++....+++ ++-|-.|+-|. +++++||+|.-.+
T Consensus 72 ~~~~~~v~~~i~~~~~~~--v~vnlsgG~R~l~~~~~~a~~~~~~~ 115 (203)
T TIGR01884 72 PSILRQMSDIIKEEREPR--VIINLSGGMRILILILLLLAILVKTR 115 (203)
T ss_pred HHHHHHHHHHHHhcccCc--EEEEcCCCchHHHHHHHHHHHhcccc
Confidence 466777777777766635 44455665673 3556667766443
No 139
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=27.61 E-value=4.3e+02 Score=27.02 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=22.9
Q ss_pred CceeEEEEEEeecCccC-CCCccceEEEeeccC
Q 001565 201 RALSLDCVILRAIPNFD-AQNGCRPIIRIFGRN 232 (1052)
Q Consensus 201 ~~l~L~~IiL~~iP~f~-~~~GcrP~l~Iy~~~ 232 (1052)
..|.+.=|..++++..+ ..+.|.||++||-..
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp 61 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLE 61 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEEC
Confidence 45677777777777654 345689999999753
No 140
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=27.58 E-value=1.1e+02 Score=29.34 Aligned_cols=25 Identities=16% Similarity=0.172 Sum_probs=16.0
Q ss_pred cEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 121 NVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 121 NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
..|||+|..|+.+ +..++.+|.+.|
T Consensus 80 ~~vv~~c~~g~~~--a~~~~~~l~~~G 104 (122)
T cd01448 80 DTVVVYDDGGGFF--AARAWWTLRYFG 104 (122)
T ss_pred CEEEEECCCCCcc--HHHHHHHHHHcC
Confidence 5789999887334 444555555555
No 141
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=27.15 E-value=90 Score=33.17 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhCCC----------ccEEEEEec-CCCcchHHHHHHHHHHHhcCC
Q 001565 101 SLIQHFLRVCEHWLLLGDH----------QNVILLHSE-RGGWPLLAFLLASLLIFRKLH 149 (1052)
Q Consensus 101 ~~L~~~c~~~~~WL~~d~~----------~NVvvVHCk-~GkgRt~g~mia~yLly~~~~ 149 (1052)
+.|-.+|+....|+..+.. ..++.||.- +|.||| |=+++.+++....|
T Consensus 88 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~H~~f~~IHPF~DGNGRt-~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 88 SELAILLDDVRYWLQNGTFSPDEIAIRFHHRLVAIHPFPNGNGRH-ARLATDLLLEQQGY 146 (186)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHheecCcCCCCcHH-HHHHHHHHHHHCCC
Confidence 6777888888888865321 135789985 699998 66666666655444
No 142
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=26.54 E-value=3.6e+02 Score=26.24 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=47.7
Q ss_pred CceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecc-cccCCeE
Q 001565 201 RALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQC-LVQGDVV 278 (1052)
Q Consensus 201 ~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~-~V~GDV~ 278 (1052)
..|++.-|.-++++..+..+.|.||++|+..+. ......+.|....+.. -.|. +.+.|.+.- .....+.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~-----~~~~~~~rT~v~~~~~~P~wn----e~f~~~~~~~~~~~~l~ 83 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPD-----PKNETKQKTKTIKKTLNPVWN----ETFTFDLKPADKDRRLS 83 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcC-----CCCCceecceeecCCCCCCcc----ceEEEeCCchhcCCEEE
Confidence 456677666777887766678999999997531 0112234443211111 1121 224454421 1334577
Q ss_pred EEEEeCCCCCCcceeEEEEEeecc
Q 001565 279 LECVHLDLDPEREVMMFRVMFNTA 302 (1052)
Q Consensus 279 I~~~h~~~~~~~~~~mFr~~FnT~ 302 (1052)
|.+|+.+. ......|.++.|.-.
T Consensus 84 v~v~d~~~-~~~~~~iG~~~~~l~ 106 (131)
T cd04026 84 IEVWDWDR-TTRNDFMGSLSFGVS 106 (131)
T ss_pred EEEEECCC-CCCcceeEEEEEeHH
Confidence 77777653 233445555555443
No 143
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=26.01 E-value=4.9e+02 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=21.1
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccC
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRN 232 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~ 232 (1052)
|.+.=+.-++++..+..+.|.||++|+.++
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~ 32 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT 32 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC
Confidence 455555556677666567899999998763
No 144
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=25.70 E-value=4.9e+02 Score=24.55 Aligned_cols=86 Identities=12% Similarity=0.193 Sum_probs=42.7
Q ss_pred eeEEEEEEeecCccCC------CCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccC
Q 001565 203 LSLDCVILRAIPNFDA------QNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQG 275 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~------~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~G 275 (1052)
|+++=+.-++++..+. .+.|.||++|+.++ ..+.|....+.. ..|. +.+.|.+.-.-..
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~----------~~~kT~~~~~t~~P~W~----e~f~~~v~~~~~~ 68 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA----------QTFKSKVIKENLNPKWN----EVYEAVVDEVPGQ 68 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC----------EeEEccccCCCCCCccc----ceEEEEeCCCCCC
Confidence 3344444445554432 24699999999863 345554322111 1222 2244444222233
Q ss_pred CeEEEEEeCCCCCCcceeEEEEEeecccc
Q 001565 276 DVVLECVHLDLDPEREVMMFRVMFNTAFI 304 (1052)
Q Consensus 276 DV~I~~~h~~~~~~~~~~mFr~~FnT~FI 304 (1052)
.+.|+||+.+.. +...|.++.+...-+
T Consensus 69 ~l~i~v~d~~~~--~~~~iG~~~i~l~~l 95 (121)
T cd08391 69 ELEIELFDEDPD--KDDFLGRLSIDLGSV 95 (121)
T ss_pred EEEEEEEecCCC--CCCcEEEEEEEHHHh
Confidence 566677776542 344566666665443
No 145
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=25.57 E-value=70 Score=31.28 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=16.5
Q ss_pred CCCccEEEEEecCCCcchHHHHHHHHHHH
Q 001565 117 GDHQNVILLHSERGGWPLLAFLLASLLIF 145 (1052)
Q Consensus 117 d~~~NVvvVHCk~GkgRt~g~mia~yLly 145 (1052)
+.+ ..||+||..++.| +..+|.+|..
T Consensus 66 ~~~-~~vv~yC~~sg~r--s~~aa~~L~~ 91 (121)
T cd01530 66 KKR-RVLIFHCEFSSKR--GPRMARHLRN 91 (121)
T ss_pred CCC-CEEEEECCCcccc--HHHHHHHHHH
Confidence 444 6899999744457 3555556554
No 146
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=25.52 E-value=4.2e+02 Score=24.18 Aligned_cols=23 Identities=17% Similarity=0.097 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhCCCCcEEEEeecCC
Q 001565 44 LHEILTELHEEFPDSAFLAFNFREG 68 (1052)
Q Consensus 44 i~dV~~~L~~~h~~~~y~V~NLs~~ 68 (1052)
.+++.+.|++... ++.|..+++.
T Consensus 3 ~~~l~~~~~~~~~--~~~liDvR~~ 25 (95)
T cd01534 3 AAELARWAAEGDR--TVYRFDVRTP 25 (95)
T ss_pred HHHHHHHHHcCCC--CeEEEECCCH
Confidence 3567777765422 5888888764
No 147
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=25.03 E-value=1.8e+02 Score=28.65 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=25.1
Q ss_pred CCceeEEEEEEeecCccCCCCccceEEEeecc
Q 001565 200 ERALSLDCVILRAIPNFDAQNGCRPIIRIFGR 231 (1052)
Q Consensus 200 ~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~ 231 (1052)
...|+++-|.-++++..+..+.|.||++|+..
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~ 46 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELL 46 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEE
Confidence 34577777777788887766889999999975
No 148
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=24.36 E-value=4.4e+02 Score=27.08 Aligned_cols=69 Identities=6% Similarity=-0.008 Sum_probs=37.4
Q ss_pred CccceEEEeeccCcccCCCCCccEEEeccccccccceecccCCcEEEEeeccc-ccCCeEEEEEeCCCCCCcceeEEEEE
Q 001565 220 NGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCL-VQGDVVLECVHLDLDPEREVMMFRVM 298 (1052)
Q Consensus 220 ~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~-V~GDV~I~~~h~~~~~~~~~~mFr~~ 298 (1052)
+.|.||++|.-++.. ..++++..+. --.| ++.+.|.+.+. +...|.|++++.+. ..+.+.|.++.
T Consensus 33 ~~~DPYV~V~~~g~~----~kT~v~~~t~-----nPvW----NE~f~f~v~~p~~~~~l~~~v~D~d~-~~~dd~iG~~~ 98 (151)
T cd04018 33 ELVDPYVEVSFAGQK----VKTSVKKNSY-----NPEW----NEQIVFPEMFPPLCERIKIQIRDWDR-VGNDDVIGTHF 98 (151)
T ss_pred CCcCcEEEEEECCEe----eecceEcCCC-----CCCc----ceEEEEEeeCCCcCCEEEEEEEECCC-CCCCCEEEEEE
Confidence 579999999876421 0112222111 0122 23356665433 45567788888764 23456677776
Q ss_pred eecc
Q 001565 299 FNTA 302 (1052)
Q Consensus 299 FnT~ 302 (1052)
|.-.
T Consensus 99 l~l~ 102 (151)
T cd04018 99 IDLS 102 (151)
T ss_pred EeHH
Confidence 6655
No 149
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=24.02 E-value=1.5e+02 Score=27.46 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=15.5
Q ss_pred cEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 121 NVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 121 NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
..|||||..|. |+ ..+|.+|...|
T Consensus 62 ~~ivv~C~~G~-rs--~~aa~~L~~~G 85 (100)
T cd01523 62 QEVTVICAKEG-SS--QFVAELLAERG 85 (100)
T ss_pred CeEEEEcCCCC-cH--HHHHHHHHHcC
Confidence 56889999874 63 55555555444
No 150
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=23.41 E-value=1.5e+02 Score=26.93 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=14.2
Q ss_pred cEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 121 NVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 121 NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
.-+||||..|. | +..++.+|...|
T Consensus 57 ~~ivv~c~~g~-~--s~~a~~~l~~~G 80 (96)
T cd01444 57 RPVVVYCYHGN-S--SAQLAQALREAG 80 (96)
T ss_pred CCEEEEeCCCC-h--HHHHHHHHHHcC
Confidence 35999999653 4 344455555443
No 151
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=23.38 E-value=6.9e+02 Score=24.23 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=39.7
Q ss_pred EEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEEEeCCC
Q 001565 208 VILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLECVHLDL 286 (1052)
Q Consensus 208 IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~~h~~~ 286 (1052)
+.-+++...+..+.|.||++|+.++. .+.|....+.. -.|. +.+.|.+. ...-.+.|+||+.+.
T Consensus 10 ~~A~~L~~~d~~g~~dPyv~v~~~~~----------~~kT~v~~~t~nP~Wn----e~f~f~~~-~~~~~l~i~V~d~~~ 74 (126)
T cd04046 10 HSAEGLSKQDSGGGADPYVIIKCEGE----------SVRSPVQKDTLSPEFD----TQAIFYRK-KPRSPIKIQVWNSNL 74 (126)
T ss_pred EeCcCCCCCCCCCCcCccEEEEECCE----------EEEeCccCCCCCCccc----ceEEEEec-CCCCEEEEEEEECCC
Confidence 33344555555578999999987642 23443221111 1222 22444432 123457888888654
Q ss_pred CCCcceeEEEEEeec
Q 001565 287 DPEREVMMFRVMFNT 301 (1052)
Q Consensus 287 ~~~~~~~mFr~~FnT 301 (1052)
. ....|.++.|.-
T Consensus 75 ~--~d~~lG~~~~~l 87 (126)
T cd04046 75 L--CDEFLGQATLSA 87 (126)
T ss_pred C--CCCceEEEEEec
Confidence 2 234565555544
No 152
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=23.27 E-value=1.8e+02 Score=33.63 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=35.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhCCCc-------------cEEEEEec-CCCcchHHHHHHHHHHHhc
Q 001565 94 GCPLLPMSLIQHFLRVCEHWLLLGDHQ-------------NVILLHSE-RGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 94 g~P~p~L~~L~~~c~~~~~WL~~d~~~-------------NVvvVHCk-~GkgRt~g~mia~yLly~~ 147 (1052)
|.| +.-+-+...++++..||.....- -.|.||-. +|.|||+-+++-..||..|
T Consensus 329 hiP-p~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMraG 395 (472)
T KOG3824|consen 329 HIP-PSPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRAG 395 (472)
T ss_pred CCC-CChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhcC
Confidence 344 35567777778888999865321 25677754 7999997777666666555
No 153
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=22.76 E-value=3.5e+02 Score=25.72 Aligned_cols=68 Identities=9% Similarity=0.081 Sum_probs=37.2
Q ss_pred CccceEEEeeccCcccCCCCCccEEEecccccccc-ceecccCCcEEEEeecccccCCeEEEEEeCCCCCCcceeEEEEE
Q 001565 220 NGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTL-RHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVM 298 (1052)
Q Consensus 220 ~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~-r~y~~~d~~~i~i~i~~~V~GDV~I~~~h~~~~~~~~~~mFr~~ 298 (1052)
|.+.||++|+.++ +.++.|....+.. ..| ++.+.|.+.-.-.-.+.|+|++.+.. +...|.++.
T Consensus 11 G~~dPYv~v~v~~---------~~~~kT~v~~~t~nP~W----ne~f~f~v~~~~~~~l~i~v~d~~~~--~d~~iG~~~ 75 (111)
T cd04052 11 GLLSPYAELYLNG---------KLVYTTRVKKKTNNPSW----NASTEFLVTDRRKSRVTVVVKDDRDR--HDPVLGSVS 75 (111)
T ss_pred CCCCceEEEEECC---------EEEEEEeeeccCCCCcc----CCceEEEecCcCCCEEEEEEEECCCC--CCCeEEEEE
Confidence 5689999999874 3455554321111 122 12244444211122377888887643 456777777
Q ss_pred eecc
Q 001565 299 FNTA 302 (1052)
Q Consensus 299 FnT~ 302 (1052)
|.-.
T Consensus 76 v~L~ 79 (111)
T cd04052 76 ISLN 79 (111)
T ss_pred ecHH
Confidence 7643
No 154
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=22.68 E-value=1.6e+02 Score=27.69 Aligned_cols=79 Identities=13% Similarity=0.065 Sum_probs=39.3
Q ss_pred ccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCcc
Q 001565 42 LYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQN 121 (1052)
Q Consensus 42 N~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~N 121 (1052)
-..+++...|++. . ++.|...++... +... |.+ ...+. ++..|... ..+|..+.+ .
T Consensus 12 i~~~~l~~~~~~~--~-~~~liDvR~~~e-------~~~g-----hIp-gaini---p~~~l~~~----~~~l~~~~~-~ 67 (109)
T cd01533 12 VSADELAALQARG--A-PLVVLDGRRFDE-------YRKM-----TIP-GSVSC---PGAELVLR----VGELAPDPR-T 67 (109)
T ss_pred CCHHHHHHHHhcC--C-CcEEEeCCCHHH-------HhcC-----cCC-CceeC---CHHHHHHH----HHhcCCCCC-C
Confidence 4566777777542 2 477888876421 1111 111 11123 35544332 234433433 5
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 122 VILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 122 VvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
-|||||..|. |. .+++.+|...|
T Consensus 68 ~ivv~C~~G~-rs--~~a~~~L~~~G 90 (109)
T cd01533 68 PIVVNCAGRT-RS--IIGAQSLINAG 90 (109)
T ss_pred eEEEECCCCc-hH--HHHHHHHHHCC
Confidence 6899998774 63 44455554444
No 155
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=22.64 E-value=3.2e+02 Score=25.09 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=13.5
Q ss_pred HHHHHHHhhhCCCCcEEEEeecCC
Q 001565 45 HEILTELHEEFPDSAFLAFNFREG 68 (1052)
Q Consensus 45 ~dV~~~L~~~h~~~~y~V~NLs~~ 68 (1052)
+++.+.| ..+ .++|+..+..
T Consensus 3 ~el~~~l---~~~-~~~liD~R~~ 22 (113)
T PF00581_consen 3 EELKEML---ENE-SVLLIDVRSP 22 (113)
T ss_dssp HHHHHHH---TTT-TEEEEEESSH
T ss_pred HHHHhhh---hCC-CeEEEEeCCH
Confidence 4566666 223 7999999864
No 156
>cd08622 PI-PLCXDc_CG14945_like Catalytic domain of Drosophila melanogaster CG14945-like proteins similar to phosphatidylinositol-specific phospholipase C, X domain containing. This subfamily corresponds to the catalytic domain present in uncharacterized metazoan Drosophila melanogaster CG14945-like proteins, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI
Probab=22.41 E-value=82 Score=35.65 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCccEEEEEecC
Q 001565 100 MSLIQHFLRVCEHWLLLGDHQNVILLHSER 129 (1052)
Q Consensus 100 L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~ 129 (1052)
...+-+++++|.+||.+. + -||+|.++.
T Consensus 79 ~~~l~~vL~~v~~Fl~~~-~-EvVil~~~~ 106 (276)
T cd08622 79 IVPLLTVLNDVRNFVQNT-G-EIVVLDFHR 106 (276)
T ss_pred cccHHHHHHHHHHHHHHC-C-CEEEEEEEc
Confidence 367889999999999999 5 799998874
No 157
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=22.21 E-value=1.5e+02 Score=26.26 Aligned_cols=31 Identities=19% Similarity=0.023 Sum_probs=17.3
Q ss_pred HHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 113 WLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 113 WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
.+..+.. ..|||+|..| .| +..++.+|...+
T Consensus 50 ~~~~~~~-~~iv~~c~~g-~~--a~~~~~~l~~~G 80 (100)
T smart00450 50 RLGLDKD-KPVVVYCRSG-NR--SAKAAWLLRELG 80 (100)
T ss_pred HcCCCCC-CeEEEEeCCC-cH--HHHHHHHHHHcC
Confidence 3334444 6899999544 45 344555554443
No 158
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=22.11 E-value=1.2e+02 Score=36.11 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=34.7
Q ss_pred EEeecCCCccchhhhhhcccCcE--EeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCC
Q 001565 62 AFNFREGEKQSEFAEILCEYDVT--VLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERG 130 (1052)
Q Consensus 62 V~NLs~~~~~s~~~~~~s~f~~~--V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~G 130 (1052)
|.++..+.+..++.+....|+.. ++++.|. .+ ..++.|-+.|+. ..+-+ .|+++||+--
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg---~~-v~p~~v~~~L~~-----~~~~~-~V~~vH~ETS 143 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVVVLEVEWG---EA-VDPEEVEEALDK-----DPDIK-AVAVVHNETS 143 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceEEEeCCCC---CC-CCHHHHHHHHhc-----CCCcc-EEEEEeccCc
Confidence 34444444556677766666544 5556553 33 367766665551 12345 8999999843
No 159
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=21.74 E-value=95 Score=35.36 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEecCCC
Q 001565 102 LIQHFLRVCEHWLLLGDHQNVILLHSERGG 131 (1052)
Q Consensus 102 ~L~~~c~~~~~WL~~d~~~NVvvVHCk~Gk 131 (1052)
.+-+++++|.+||.++++ -||+|+++.-.
T Consensus 98 ~~~~~L~~i~~fl~~~p~-Evvil~~~~~~ 126 (290)
T cd08616 98 LVKEILEEINDFLTEHPK-EVVILDFNHFY 126 (290)
T ss_pred hHHHHHHHHHHHHHHCCC-cEEEEEEEccC
Confidence 788899999999999988 89999997543
No 160
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=21.46 E-value=6.4e+02 Score=25.36 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=48.6
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccceecccCCcEEEEeecccccCCeEEEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECV 282 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV~I~~~ 282 (1052)
|.++=|.-+.++. .++|.||++|..++. -..|......--.|. +.+.|.+.- .++.+.|+++
T Consensus 4 L~V~Vv~Ar~L~~---~~~~dPYV~Ik~g~~----------k~kT~v~~~~nP~Wn----E~F~F~~~~-~~~~L~v~V~ 65 (127)
T cd08394 4 LCVLVKKAKLDGA---PDKFNTYVTLKVQNV----------KSTTIAVRGSQPCWE----QDFMFEINR-LDLGLVIELW 65 (127)
T ss_pred EEEEEEEeeCCCC---CCCCCCeEEEEECCE----------EeEeeECCCCCCcee----eEEEEEEcC-CCCEEEEEEE
Confidence 4444455555543 467899999988742 122222111111222 346676642 5566899999
Q ss_pred eCCCCCCcceeEEEEEeeccccc
Q 001565 283 HLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 283 h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
+.+. ...+.|.+++|...=|.
T Consensus 66 dkd~--~~DD~lG~v~i~L~~v~ 86 (127)
T cd08394 66 NKGL--IWDTLVGTVWIPLSTIR 86 (127)
T ss_pred eCCC--cCCCceEEEEEEhHHcc
Confidence 8763 35678889888877554
No 161
>PF05619 DUF787: Borrelia burgdorferi protein of unknown function (DUF787); InterPro: IPR008505 This entry consists of several hypothetical proteins of unknown function from Borrelia species. They may be proteinases as the majority contain a propeptide proteinase inhibitor domain which is associated with both serine and metallopeptidases.
Probab=21.25 E-value=1.9e+02 Score=32.98 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=51.0
Q ss_pred cccccHHHHHHHHhhhCCCCcEEEEeecCCCc-c---chhhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 001565 39 MYQLYLHEILTELHEEFPDSAFLAFNFREGEK-Q---SEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWL 114 (1052)
Q Consensus 39 ~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~-~---s~~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL 114 (1052)
.|++.+++|..||+++- + .|.||==..++- + .-+.+|+..|.+.+.=|=|.. ..+.|-+|.+.-
T Consensus 100 iYk~~~k~ik~~lk~~~-h-~fvV~int~~dn~ddgltiy~~dy~~fk~~~~FfVfsT------ke~~ike~fk~~---- 167 (362)
T PF05619_consen 100 IYKDKIKEIKDYLKSNR-H-SFVVFINTQGDNSDDGLTIYKDDYNKFKDPSNFFVFST------KESEIKEFFKNK---- 167 (362)
T ss_pred EEcCCHHHHHHHHHhCC-C-cEEEEEecCCccccccchhhhhHHHHhcCceeEEEEEc------chhhHHHHhcCC----
Confidence 79999999999998754 3 577764332221 1 012234445544332221111 133444443311
Q ss_pred hhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCC
Q 001565 115 LLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLH 149 (1052)
Q Consensus 115 ~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~ 149 (1052)
+...+.+++|||..+--.-.+ -.++.||.-...+
T Consensus 168 ~nsek~~iI~vys~~~dnLHL-kFvs~YLhqasif 201 (362)
T PF05619_consen 168 SNSEKKRIIVVYSNNEDNLHL-KFVSKYLHQASIF 201 (362)
T ss_pred CchhhcceEEEEeCCcceeeh-hHHHHHHhHhhhh
Confidence 111122899999865433343 3468888765543
No 162
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=21.19 E-value=5.5e+02 Score=22.32 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=42.2
Q ss_pred EEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccc-cceecccCCcEEEEeecccccCCeEEEEEe
Q 001565 205 LDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKT-LRHYRQADCDVIKIDIQCLVQGDVVLECVH 283 (1052)
Q Consensus 205 L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~-~r~y~~~d~~~i~i~i~~~V~GDV~I~~~h 283 (1052)
+.=+..+++......+.+++|++|+..+.. ...+.|...... --.|. +.+.|.+...-...+.|+||+
T Consensus 4 i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~~~~P~w~----e~~~~~~~~~~~~~l~i~v~~ 72 (101)
T smart00239 4 VKIISARNLPKKDKKGKSDPYVKVSLDGDP-------KEKKKTKVVKNTLNPVWN----ETFEFEVPPPELAELEIEVYD 72 (101)
T ss_pred EEEEEeeCCCCCCCCCCCCceEEEEEeCCc-------cceEeeeEecCCCCCccc----ceEEEEecCcccCEEEEEEEe
Confidence 333444455555444578999999887420 123333321111 11221 225555543336777888888
Q ss_pred CCCCCCcceeEEEEEee
Q 001565 284 LDLDPEREVMMFRVMFN 300 (1052)
Q Consensus 284 ~~~~~~~~~~mFr~~Fn 300 (1052)
.+... ....+.++.+.
T Consensus 73 ~~~~~-~~~~~G~~~~~ 88 (101)
T smart00239 73 KDRFG-RDDFIGQVTIP 88 (101)
T ss_pred cCCcc-CCceeEEEEEE
Confidence 76432 23455555544
No 163
>PRK03887 methylated-DNA--protein-cysteine methyltransferase; Provisional
Probab=20.90 E-value=2.7e+02 Score=29.61 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=26.2
Q ss_pred eCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCC
Q 001565 20 IERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDS 58 (1052)
Q Consensus 20 T~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~ 58 (1052)
.++|-.. .|.-++ ++..|..|..++.||++++..+
T Consensus 21 ~~~~~~~--~~~~~~--~~~~~~~~~~~~~~l~~~f~~a 55 (175)
T PRK03887 21 EEKIQGI--TFSFDG--EEFLRERISNLAEFLKKRGVKV 55 (175)
T ss_pred ecccceE--EEeccc--HHHHHHHHHHHHHHHHHhCcCc
Confidence 3566555 355555 5778889999999999999874
No 164
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=20.83 E-value=1.4e+02 Score=34.46 Aligned_cols=36 Identities=33% Similarity=0.266 Sum_probs=20.2
Q ss_pred HHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565 110 CEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRK 147 (1052)
Q Consensus 110 ~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~ 147 (1052)
+.+|+..-.++.=|||+|.+|+.|+ .++|.+|...|
T Consensus 64 i~~~~~~~~~~~~vvvyC~~gG~RS--~~aa~~L~~~G 99 (311)
T TIGR03167 64 VEQWRAFADGPPQPLLYCWRGGMRS--GSLAWLLAQIG 99 (311)
T ss_pred HHHHHhhcCCCCcEEEEECCCChHH--HHHHHHHHHcC
Confidence 4455543222012788897665674 55566666655
No 165
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=20.57 E-value=7.2e+02 Score=23.75 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=25.5
Q ss_pred CCCceeEEEEEEeecCccCCCCccceEEEeecc
Q 001565 199 PERALSLDCVILRAIPNFDAQNGCRPIIRIFGR 231 (1052)
Q Consensus 199 ~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~ 231 (1052)
....|.++=+.-++++..+..+.|.||++|+-.
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~ 45 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLL 45 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEe
Confidence 345677777777888887766889999999864
No 166
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.52 E-value=5e+02 Score=27.12 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=44.1
Q ss_pred cccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 001565 37 DGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLL 116 (1052)
Q Consensus 37 E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~ 116 (1052)
+...+..|....+.|++..+. ....|-.-.+.+.......+.+.+.+++.+-.+...|=...-+. +++.+.+.+.
T Consensus 76 ~~~~~~ei~~~~~~l~~~~g~-~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~---i~~~~~~~~~- 150 (191)
T TIGR02764 76 DEKIKKDILRAQEIIEKLTGK-KPTLFRPPSGAFNKAVLKAAESLGYTVVHWSVDSRDWKNPGVES---IVDRVVKNTK- 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCEEECCCcCCCHHHHHHHHHcCCeEEEecCCCCccCCCCHHH---HHHHHHhcCC-
Confidence 445666777777777776554 44455544443433333445566777766532221111112232 2333333333
Q ss_pred CCCccEEEEEecC
Q 001565 117 GDHQNVILLHSER 129 (1052)
Q Consensus 117 d~~~NVvvVHCk~ 129 (1052)
+. .||++||..
T Consensus 151 -~g-~Iil~Hd~~ 161 (191)
T TIGR02764 151 -PG-DIILLHASD 161 (191)
T ss_pred -CC-CEEEEeCCC
Confidence 34 799999943
No 167
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=20.18 E-value=6.1e+02 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=21.5
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccC
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRN 232 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~ 232 (1052)
|+++-+.-++++..+..+.|.||++|+.++
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~ 32 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLN 32 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECC
Confidence 445555556677766668899999999864
No 168
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=20.13 E-value=7.1e+02 Score=24.47 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=44.5
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEecccccc-c-cceecccCCcEEEEeecccccCCeEEE
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRK-T-LRHYRQADCDVIKIDIQCLVQGDVVLE 280 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~-~-~r~y~~~d~~~i~i~i~~~V~GDV~I~ 280 (1052)
|.++-|.-+.+.+.+ -+.|.||++|.-++. .+.|..... . -..| ++.+.|.+... ...+.|+
T Consensus 4 L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~----------~~kT~v~~~~~~nP~W----Ne~F~f~v~~~-~~~l~~~ 67 (121)
T cd04016 4 LSITVVQAKLVKNYG-LTRMDPYCRIRVGHA----------VYETPTAYNGAKNPRW----NKTIQCTLPEG-VDSIYIE 67 (121)
T ss_pred EEEEEEEccCCCcCC-CCCCCceEEEEECCE----------EEEeEEccCCCCCCcc----CeEEEEEecCC-CcEEEEE
Confidence 555555556666655 478999999998742 234432211 0 1122 23466665322 2357788
Q ss_pred EEeCCCCCCcceeEEEEEeec
Q 001565 281 CVHLDLDPEREVMMFRVMFNT 301 (1052)
Q Consensus 281 ~~h~~~~~~~~~~mFr~~FnT 301 (1052)
+|+.+. .++...|.++.+.-
T Consensus 68 V~d~d~-~~~dd~iG~~~i~l 87 (121)
T cd04016 68 IFDERA-FTMDERIAWTHITI 87 (121)
T ss_pred EEeCCC-CcCCceEEEEEEEC
Confidence 888764 33445664444433
No 169
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=20.08 E-value=1.5e+02 Score=36.75 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.2
Q ss_pred cEEEEEecCCCcchHHHHHHHH
Q 001565 121 NVILLHSERGGWPLLAFLLASL 142 (1052)
Q Consensus 121 NVvvVHCk~GkgRt~g~mia~y 142 (1052)
-=|||||.+|.-|| ..||++
T Consensus 345 ~sVlvhcsdGwDrT--~qV~SL 364 (573)
T KOG1089|consen 345 ASVLVHCSDGWDRT--CQVSSL 364 (573)
T ss_pred CeEEEEccCCcchh--HHHHHH
Confidence 45889999998887 455555
No 170
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=20.05 E-value=5.2e+02 Score=24.80 Aligned_cols=89 Identities=8% Similarity=0.022 Sum_probs=47.4
Q ss_pred eeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccc--cccceecccCCcEEEEeeccc-c---cCC
Q 001565 203 LSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKR--KTLRHYRQADCDVIKIDIQCL-V---QGD 276 (1052)
Q Consensus 203 l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~--~~~r~y~~~d~~~i~i~i~~~-V---~GD 276 (1052)
|.++=+.-++++..+..+.|.||++|+..+. ..+.|.... ..-..|. +.+.|.+.-. + ..-
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~---------~~~~T~~~~~~~~~P~Wn----e~f~f~v~~~~~~~~~~~ 68 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPS---------HKQSTPVDRDGGTNPTWN----ETLRFPLDERLLQQGRLA 68 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCC---------cccccccccCCCCCCCCC----CEEEEEcChHhcccCccE
Confidence 3444455556776665678999999998641 112222110 0011222 2355665322 2 445
Q ss_pred eEEEEEeCCCCCCcceeEEEEEeeccccc
Q 001565 277 VVLECVHLDLDPEREVMMFRVMFNTAFIR 305 (1052)
Q Consensus 277 V~I~~~h~~~~~~~~~~mFr~~FnT~FI~ 305 (1052)
+.|++|+.+. +.....|.++.|.-.-+.
T Consensus 69 l~~~v~d~~~-~~~~~~lG~~~i~l~~l~ 96 (125)
T cd04051 69 LTIEVYCERP-SLGDKLIGEVRVPLKDLL 96 (125)
T ss_pred EEEEEEECCC-CCCCCcEEEEEEEHHHhh
Confidence 6778887654 233456777777666554
Done!