Query 001566
Match_columns 1052
No_of_seqs 701 out of 7094
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 17:01:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001566.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_863-867//hhsearch_pdb/001566hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 630.0 43.7 619 42-691 6-746 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 498.1 35.6 554 121-690 75-722 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 473.7 39.1 556 123-690 25-627 (680)
4 4eco_A Uncharacterized protein 1.0 1 1 469.2 29.2 507 44-689 26-630 (636)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 464.4 31.0 505 42-689 263-870 (876)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 459.0 37.0 510 110-672 35-567 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 457.1 31.3 506 123-689 33-564 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 439.8 40.2 530 70-676 2-571 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 438.9 29.2 542 76-689 5-562 (606)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 432.7 39.6 513 121-690 22-565 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=630.03 Aligned_cols=619 Identities=30% Similarity=0.428 Sum_probs=473.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC---CC--
Q ss_conf 8999922499999999865679988656778999999877037306999648999825788999987643432---43--
Q 001566 42 AESVPTTDSASLLSFKASISRDPSNLLATWNSSTDHCTWHGVTCDHFTGRVTALRITGKATPWPSKSSVISGT---LS-- 116 (1052)
Q Consensus 42 ~~~~~~~d~~~ll~~k~~~~~~~~~~l~~W~~~~~~C~w~gV~C~~~~~~v~~l~l~~~~~~~~~~~~~~~g~---l~-- 116 (1052)
+++..++|++||++||+++. ||. .+++|+.++|||.|.||+|+ +++|+.+++.+.. +.|. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~---------l~g~~~~l~~~ 72 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKP---------LNVGFSAVSSS 72 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSC---------CCEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC-CCC-CCCCCCCCCCCCCCCCEEEC--CCCEEEEECCCCC---------CCCCCCCCCHH
T ss_conf 56687899999999996678-962-14687899987688413878--9927898778998---------67755766965
Q ss_pred ---------------------HHHCCCCCCCEEEECCCCCEECCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCC
Q ss_conf ---------------------2100788878557037982002898--73587876489813750333589324-38777
Q 001566 117 ---------------------ASIAKLTELRTLSVPHNSFSGEIPA--GVGELRLLEVLELQGNNFSGKIPYQM-SNLER 172 (1052)
Q Consensus 117 ---------------------~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~ 172 (1052)
+.++.+++|++|+|++|.+.|.+|. .++++++|++|+|++|.+.+.+|..+ ..+++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 73168022467868886787033245788998989898578707896787278899989896882677479778563889
Q ss_pred CCEEECCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 885852234363358822---33999986798568744675566787545777779824786887778124799999989
Q 001566 173 LRVLNLSFNSFSGEVPRG---LIGNGELSVIDMSSNRLSGGLAIDSSSECEFLTYLKLSDNFLTESIPKEIGKCRNLKNL 249 (1052)
Q Consensus 173 L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 249 (1052)
|++|++++|.+++..|.. +.++++|+.|++++|++.+..+. ..+++|++|++++|.+++.+|. ++.+++|++|
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L 228 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred CCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEE
T ss_conf 99898979835885871556643589889898978803465784---5478689898928827887711-1269999989
Q ss_pred ECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-----------CCCCCC
Q ss_conf 757982433423210079998799942798977777121037999803215665556678877-----------865444
Q 001566 250 LLDGNILEGSIPKEIGTISELKVLDVSRNSLTDRIPVELADCSKLSVLVLTNIDASLDLDNSR-----------GEFSAF 318 (1052)
Q Consensus 250 ~l~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~~~~~l~~~~-----------~~~~~~ 318 (1052)
++++|.+++.+|..++.+++|++|++++|++.+.+|.. .+++|+.|++++|.+....+... -..+.+
T Consensus 229 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp ECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCC
T ss_conf 79488587816577744888898989888665716724--3687898979178557725888884468688998968967
Q ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCC
Q ss_conf 6898622220247828756899787558964-44898742996799945334782320348-998996879947678998
Q 001566 319 DGGVPYELLLSRSLEVLWAPRANLGGRLPDN-WSESCSLKVLNLGQNSLKGAVPKSLGMCR-NLTYLDLSLNNLEGYLPM 396 (1052)
Q Consensus 319 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~ 396 (1052)
.+..|..+..+++|+.|++.+|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|+.|++++|++++.+|.
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCH
T ss_conf 78423677558776677897885257379788724888878848478437623098986322771998627874787676
Q ss_pred CCC---CCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 877---7874467112670223589-987555676667444521223545653453136875226883346667654565
Q 001566 397 QLP---VPCMVYFNVSQNNITGVLP-RFENVSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGD 472 (1052)
Q Consensus 397 ~~~---~~~L~~l~l~~N~l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~ 472 (1052)
.+. ++.|+.+++++|++++.+| .+..+..+..+.+.+...... ....+.....+..+++++|.+.+.+|..
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~---- 461 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQE---- 461 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCCSCCCGG----
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCHH----
T ss_conf 66533247761898977846542487775689879898958846685-4677744998898989788154718978----
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 31124542248844059745678897321236887522775575213575658897327675199755850133563235
Q 001566 473 GFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAAGV 552 (1052)
Q Consensus 473 ~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 552 (1052)
...++.+..+.+++|.+++.+|.. +..++.|+ .|++++|.+.+..+.. +..+++|+.|++++|++.+.+|..+
T Consensus 462 ---~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~--~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 462 ---LMYVKTLETLILDFNDLTGEIPSG-LSNCTNLN--WISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp ---GGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCC--EEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEECCGGG
T ss_pred ---HCCCCCCEEEEECCCCCCCCCCHH-HHCCCCCC--EEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf ---828777329990199513758878-81699899--8975399518968768-8568999989897894337488777
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCC--------------------------------------------------------
Q ss_conf 899977799754985889996000--------------------------------------------------------
Q 001566 553 GKLMKLQRLDLRGNRVSGSLPDEL-------------------------------------------------------- 576 (1052)
Q Consensus 553 ~~l~~L~~L~L~~N~l~~~~p~~~-------------------------------------------------------- 576 (1052)
+.+++|+.|++++|.+++.+|..+
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 08898998989888468827957860421223201345421111344432222332221001355632320023211001
Q ss_pred --------------CCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
Q ss_conf --------------597448689758983597682111189778699858997899883111023421200134864788
Q 001566 577 --------------GKLKFLKWILLGGNNLTGEIPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSG 642 (1052)
Q Consensus 577 --------------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 642 (1052)
..+++|+.|+|++|+++|.+|..++++++|+.|++++|+++|.+|..++++++|+.|+|++|++++
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 13310046274334033566579785880155587788414157878486880388789678477789989897880238
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC
Q ss_conf 777433344435812122464668889764---4543221397024578998
Q 001566 643 EIPVSFSTLVNLSALDLSFNNLSGHIPHLQ---HLDCIAFKGNKYLASCPDT 691 (1052)
Q Consensus 643 ~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~---~l~~~~~~~n~~~~~~~~~ 691 (1052)
.+|..+..+++|+.|++++|+++|.+|... .+....+.|||..|..|-+
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC
T ss_conf 6886775788789787968815560899601024897775698321088776
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=498.06 Aligned_cols=554 Identities=28% Similarity=0.402 Sum_probs=441.9
Q ss_pred CCCCCCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCC
Q ss_conf 788878557037982002898735878764898137503335893--24387778858522343633588223-399998
Q 001566 121 KLTELRTLSVPHNSFSGEIPAGVGELRLLEVLELQGNNFSGKIPY--QMSNLERLRVLNLSFNSFSGEVPRGL-IGNGEL 197 (1052)
Q Consensus 121 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L 197 (1052)
++++|+.++++.+.+. .+|+.++.+++|++|+|++|.+++.+|. .++.+++|++|+|++|.+.+.+|..+ ..+++|
T Consensus 75 ~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 75 SLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred CCCCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 1680224678688867-870332457889989898985787078967872788999898968826774797785638899
Q ss_pred CEEECCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEC
Q ss_conf 679856874467556678--754577777982478688777812479999998975798243342321007999879994
Q 001566 198 SVIDMSSNRLSGGLAIDS--SSECEFLTYLKLSDNFLTESIPKEIGKCRNLKNLLLDGNILEGSIPKEIGTISELKVLDV 275 (1052)
Q Consensus 198 ~~L~Ls~N~l~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~L 275 (1052)
+.|++++|++.+..+... +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.+|. ++.+++|++|++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 230 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred CEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEEC
T ss_conf 989897983588587155664358988989897880346578--45478689898928827887711-126999998979
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC--------CCCCCCCCCCCCHHHHCC-CCCCEEECCCCCCCCCC
Q ss_conf 279897777712103799980321566555667887--------786544468986222202-47828756899787558
Q 001566 276 SRNSLTDRIPVELADCSKLSVLVLTNIDASLDLDNS--------RGEFSAFDGGVPYELLLS-RSLEVLWAPRANLGGRL 346 (1052)
Q Consensus 276 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~~~~~l~~~--------~~~~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~ 346 (1052)
++|++++.+|..+..+++|+.|++++|.+....+.. .-..+.+.+.+|..+... ++|+.|++++|.+.+.+
T Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 48858781657774488889898988866571672436878989791785577258888844686889989689677842
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCC-CC-CCCEEECCCCCCCCCCCC-CCC
Q ss_conf 964448987429967999453347823-20348998996879947678998877-78-744671126702235899-875
Q 001566 347 PDNWSESCSLKVLNLGQNSLKGAVPKS-LGMCRNLTYLDLSLNNLEGYLPMQLP-VP-CMVYFNVSQNNITGVLPR-FEN 422 (1052)
Q Consensus 347 p~~~~~~~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~-~~-~L~~l~l~~N~l~~~~p~-~~~ 422 (1052)
|..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+. ++ +|+.+++++|++++..|. +..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 36775587766778978852573797887248888788484784376230989863227719986278747876766653
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf --556766674445212235456534531368752268833466676545653112454224884405974567889732
Q 001566 423 --VSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGER 500 (1052)
Q Consensus 423 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~ 500 (1052)
...++.+.+.+...... ....+.....+..+++++|.+.+.+|.. ...++.+..+.+++|.+++.+|..
T Consensus 391 ~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------l~~l~~L~~L~L~~n~l~~~~p~~- 461 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSS-------LGSLSKLRDLKLWLNMLEGEIPQE- 461 (768)
T ss_dssp STTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGG-------GGGCTTCCEEECCSSCCCSCCCGG-
T ss_pred CCCCCCCEEECCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCHH-------HHCCCCCCEEECCCCCCCCCCCHH-
T ss_conf 3247761898977846542-4877756898798989588466854677-------744998898989788154718978-
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 12368875227755752135756588973276751997558501335632358999777997549858899960005974
Q 001566 501 ISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAAGVGKLMKLQRLDLRGNRVSGSLPDELGKLK 580 (1052)
Q Consensus 501 ~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 580 (1052)
+..++.++ +|+++.|.+.+..+..+ ..+++|++|++++|++++..|..++.+++|++|++++|++++.+|..+..++
T Consensus 462 ~~~l~~L~--~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 462 LMYVKTLE--TLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp GGGCTTCC--EEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred HCCCCCCE--EEEECCCCCCCCCCHHH-HCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCC
T ss_conf 82877732--99901995137588788-1699899897539951896876885689999898978943374887770889
Q ss_pred CCCEEECCCCCCCCCCCHHH------------------------------------------------------------
Q ss_conf 48689758983597682111------------------------------------------------------------
Q 001566 581 FLKWILLGGNNLTGEIPSQF------------------------------------------------------------ 600 (1052)
Q Consensus 581 ~L~~L~L~~N~l~~~~p~~~------------------------------------------------------------ 600 (1052)
+|+.|++++|.+++.+|..+
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 89989898884688279578604212232013454211113444322223322210013556323200232110011331
Q ss_pred ----------CCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf ----------1897786998589978998831110234212001348647887774333444358121224646688897
Q 001566 601 ----------GHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNNLSGHIPH 670 (1052)
Q Consensus 601 ----------~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 670 (1052)
..+++|++|++++|+++|.+|..+++++.|+.|+|++|++++.+|..++.+++|+.|++++|+++|.+|.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred EECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 00462743340335665797858801555877884141578784868803887896784777899898978802386886
Q ss_pred ----CCCCCCCCCCCCCCCCCCCC
Q ss_conf ----64454322139702457899
Q 001566 671 ----LQHLDCIAFKGNKYLASCPD 690 (1052)
Q Consensus 671 ----~~~l~~~~~~~n~~~~~~~~ 690 (1052)
+..+..+.+..|+.....|.
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCS
T ss_pred HHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 775788789787968815560899
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=473.70 Aligned_cols=556 Identities=21% Similarity=0.193 Sum_probs=379.2
Q ss_pred CCCCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 88785570379820028987358787648981375033358932438777885852234363358822339999867985
Q 001566 123 TELRTLSVPHNSFSGEIPAGVGELRLLEVLELQGNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSVIDM 202 (1052)
Q Consensus 123 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 202 (1052)
+++++|+|++|.+++..+..|.++++|++|++++|.+++..|..++++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88768889899778759788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHC--CCCCCCEEECCCCCC
Q ss_conf 687446755667875457777798247868877781247999999897579824334232100--799987999427989
Q 001566 203 SSNRLSGGLAIDSSSECEFLTYLKLSDNFLTESIPKEIGKCRNLKNLLLDGNILEGSIPKEIG--TISELKVLDVSRNSL 280 (1052)
Q Consensus 203 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l 280 (1052)
++|++.+ ++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|++
T Consensus 105 ~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCCCC-CCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCC
T ss_conf 8996685-396674156788889898995246672111245567779745884365297886244666321798889825
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCC-------------CCCCCCCCCCCCCCCCCHHHHCCC--CCCEEECCCCCCCCC
Q ss_conf 77777121037999803215665556-------------678877865444689862222024--782875689978755
Q 001566 281 TDRIPVELADCSKLSVLVLTNIDASL-------------DLDNSRGEFSAFDGGVPYELLLSR--SLEVLWAPRANLGGR 345 (1052)
Q Consensus 281 ~~~~p~~l~~l~~L~~L~l~~n~~~~-------------~l~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~ 345 (1052)
.+..|..+..+.+|+.++++++.... .+....-..+.+.+..|..+..+. +|+.|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 65581555322344554305664680567778777531510088745774364686675146767788877878876756
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----CC-----CCCCCCCCCEEECCCCCCCC
Q ss_conf 896444898742996799945334782320348998996879947678-----99-----88777874467112670223
Q 001566 346 LPDNWSESCSLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGY-----LP-----MQLPVPCMVYFNVSQNNITG 415 (1052)
Q Consensus 346 ~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~p-----~~~~~~~L~~l~l~~N~l~~ 415 (1052)
.+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|...+. +| ....+++|+.+++++|++++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC
T ss_conf 80211674105685577885676586562678885577363313213333355454386562467778888798982687
Q ss_pred CCCC-CCCCCCCCCCCCCCCC--CCCCCC--CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 5899-8755567666744452--122354--5653453136875226883346667654565311245422488440597
Q 001566 416 VLPR-FENVSCDNHFGFQDLQ--YANVPV--MGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNN 490 (1052)
Q Consensus 416 ~~p~-~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~n 490 (1052)
..+. +..+..+..+.+.+.. ...++. +..+ ....+..+++++|++.+..|.. ...++.+..+.+++|
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~-~~~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL-AHSPLHILNLTKNKISKIESDA-------FSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG-TTSCCCEEECTTSCCCEECTTT-------TTTCTTCCEEECCSS
T ss_pred CCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCC-CCCCCCEEECCCCCCCEECHHH-------HHCCCCCCEEECCCC
T ss_conf 88557406568728988798014432353220245-5686766889999777677544-------207788888867787
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 4567889732123688752277557521357565889732767519975585013--35632358999777997549858
Q 001566 491 MFNGSVPGERISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQIS--GSIAAGVGKLMKLQRLDLRGNRV 568 (1052)
Q Consensus 491 ~~~~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l 568 (1052)
.+++.+|...+..++.++ +++++.|.+...+...| ..+++|+.|++++|.++ +..|..+..+++|+.|++++|++
T Consensus 416 ~l~~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIF--EIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CCEEECCSGGGTTCTTCC--EEECCSCSEEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCCCCCCCCCCCCC--EEECCCCCCCEECHHHH-HCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 575435755325754612--78448997542276455-007543101101464422566776455578789998999987
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCC--------HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
Q ss_conf 89996000597448689758983597682--------1111897786998589978998831110234212001348647
Q 001566 569 SGSLPDELGKLKFLKWILLGGNNLTGEIP--------SQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRL 640 (1052)
Q Consensus 569 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--------~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 640 (1052)
++..+..|.++++|++|++++|++++..+ ..|.++++|+.|++++|+++...+..|.++++|+.|++++|++
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCC
T ss_conf 76794463455346888588997300000004677414233799888888999978877977734666752238999977
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 887774333444358121224646688897-----64454322139702457899
Q 001566 641 SGEIPVSFSTLVNLSALDLSFNNLSGHIPH-----LQHLDCIAFKGNKYLASCPD 690 (1052)
Q Consensus 641 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-----~~~l~~~~~~~n~~~~~~~~ 690 (1052)
++..+..|..+++|+.|++++|++++..+. +.++..+.+.+|||.|+|+.
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 7679768378988888989999687059668301146657798318970257766
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=469.21 Aligned_cols=507 Identities=21% Similarity=0.286 Sum_probs=355.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCC---CCEEEECCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 999224999999998656799886-------5677899999987---703730699964899982578899998764343
Q 001566 44 SVPTTDSASLLSFKASISRDPSNL-------LATWNSSTDHCTW---HGVTCDHFTGRVTALRITGKATPWPSKSSVISG 113 (1052)
Q Consensus 44 ~~~~~d~~~ll~~k~~~~~~~~~~-------l~~W~~~~~~C~w---~gV~C~~~~~~v~~l~l~~~~~~~~~~~~~~~g 113 (1052)
+....|+.||.+++.++..+.+.. .++|+.++|||.| .||+|+.. ++|+.+++.+.. +.|
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~---------l~g 95 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFG---------ASG 95 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSC---------CEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCEEEEEECCCC---------CCC
T ss_conf 6677889999999997589974547767765788777998000147798487678-978899842766---------577
Q ss_pred CCCHHHCCCCCCCEEEECCCCC------EE------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-C---------
Q ss_conf 2432100788878557037982------00------289873587876489813750333589324387-7---------
Q 001566 114 TLSASIAKLTELRTLSVPHNSF------SG------EIPAGVGELRLLEVLELQGNNFSGKIPYQMSNL-E--------- 171 (1052)
Q Consensus 114 ~l~~~l~~l~~L~~L~L~~n~l------~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~--------- 171 (1052)
.+|+++++|++|+.|+|++|.+ .+ .+|... +..|+ ++++.|.+.+.+|..++.+ .
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred CCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 288578568451189876885123774334532356733888--88887-657775541170666778877776427554
Q ss_pred ---------CCCEEECC--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----------------CCCCCCC--CCCC
Q ss_conf ---------78858522--3436335882233999986798568744675-----------------5667875--4577
Q 001566 172 ---------RLRVLNLS--FNSFSGEVPRGLIGNGELSVIDMSSNRLSGG-----------------LAIDSSS--ECEF 221 (1052)
Q Consensus 172 ---------~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~~~~~~~--~l~~ 221 (1052)
.++.+++. .|.+++ +|..+.++++|+.|+|++|++++. +| ..+. .+++
T Consensus 173 ~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~ 250 (636)
T 4eco_A 173 KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKD 250 (636)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTT
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCC-HHHHHCCCCC
T ss_conf 6541013344213001013677750-7877725647878988688236642322122222100102486-3220044687
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCHHHCCC------CCCCEEECCCCCCCCCCCC--CCCCC
Q ss_conf 7779824786887778124799999989757982-433-423210079------9987999427989777771--21037
Q 001566 222 LTYLKLSDNFLTESIPKEIGKCRNLKNLLLDGNI-LEG-SIPKEIGTI------SELKVLDVSRNSLTDRIPV--ELADC 291 (1052)
Q Consensus 222 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~-l~~-~~p~~l~~l------~~L~~L~L~~N~l~~~~p~--~l~~l 291 (1052)
|++|++++|.+.+.+|..++.+++|+.|++++|. ++| .+|..++.+ ++|+.|++++|+++ .+|. .++.+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l 329 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM 329 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred CCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCC
T ss_conf 88898048857762838883499978897847988766533578875430465788888989799377-66765554257
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99980321566555667887786544468986222202478287568997875589644489874299679994533478
Q 001566 292 SKLSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLLSRSLEVLWAPRANLGGRLPDNWSESCSLKVLNLGQNSLKGAVP 371 (1052)
Q Consensus 292 ~~L~~L~l~~n~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p 371 (1052)
++|+.|+ +++|.+.+.+| .+..+++|+.|++++|.++ .+|
T Consensus 330 ~~L~~L~--------------------------------------L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp 369 (636)
T 4eco_A 330 KKLGMLE--------------------------------------CLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP 369 (636)
T ss_dssp TTCCEEE--------------------------------------CCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC
T ss_pred CCCCEEE--------------------------------------CCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCC
T ss_conf 8889896--------------------------------------90880705166-6478898898989899403-033
Q ss_pred CCCCCCCC-CCEEECCCCCCCCCCCCCCC---CCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23203489-98996879947678998877---787446711267022358998-75556766674445212235456534
Q 001566 372 KSLGMCRN-LTYLDLSLNNLEGYLPMQLP---VPCMVYFNVSQNNITGVLPRF-ENVSCDNHFGFQDLQYANVPVMGSIS 446 (1052)
Q Consensus 372 ~~~~~l~~-L~~L~L~~N~l~~~~p~~~~---~~~L~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (1052)
..+..+++ |+.|++++|+++ .+|..+. +++|+.+++++|++++..|.. .... ...+
T Consensus 370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~-~~~~----------------- 430 (636)
T 4eco_A 370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD-PTPF----------------- 430 (636)
T ss_dssp TTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC-SSCC-----------------
T ss_pred HHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC-CCCC-----------------
T ss_conf 756510236868985298275-446655333457668897748857886524420022-0112-----------------
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf 53136875226883346667654565311245422488440597456788973212368875227755752135756588
Q 001566 447 DENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSVNLSANLLSGMSYEA 526 (1052)
Q Consensus 447 ~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~~~~ 526 (1052)
....+ ..|++++|.++.++...
T Consensus 431 ~~~~L----------------------------------------------------------~~L~Ls~N~l~~lp~~~ 452 (636)
T 4eco_A 431 KGINV----------------------------------------------------------SSINLSNNQISKFPKEL 452 (636)
T ss_dssp CCCCE----------------------------------------------------------EEEECCSSCCCSCCTHH
T ss_pred CCCCC----------------------------------------------------------CEEECCCCCCCCCCHHH
T ss_conf 58988----------------------------------------------------------88977279668678788
Q ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCC-------CCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCC
Q ss_conf 973276751997558501335632358999-------777997549858899960005--97448689758983597682
Q 001566 527 FLLDCVQLVEFEAANNQISGSIAAGVGKLM-------KLQRLDLRGNRVSGSLPDELG--KLKFLKWILLGGNNLTGEIP 597 (1052)
Q Consensus 527 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p 597 (1052)
+ ..+++|++|++++|+++.+++..+.... +|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|
T Consensus 453 ~-~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 453 F-STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP 529 (636)
T ss_dssp H-HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred H-CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CC
T ss_conf 7-158988989897997887397884044001221477338989699388-16854534458876989898998877-68
Q ss_pred HHHCCCCCCCEEEC------CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC---
Q ss_conf 11118977869985------899789988311102342120013486478877743334443581212246466888---
Q 001566 598 SQFGHLISLVVLDL------SHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNNLSGHI--- 668 (1052)
Q Consensus 598 ~~~~~l~~L~~L~l------s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~--- 668 (1052)
..+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|++. .+|..+. ++|+.|++++|++.+.-
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~ 606 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSY 606 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHH--CCCCEEECCCCCCCCCCHHH
T ss_conf 23530888787889888665667312127377856998788989899477-0597683--86789987699876336786
Q ss_pred --CCCC-CCCCCCCCCCCCCCCCC
Q ss_conf --9764-45432213970245789
Q 001566 669 --PHLQ-HLDCIAFKGNKYLASCP 689 (1052)
Q Consensus 669 --~~~~-~l~~~~~~~n~~~~~~~ 689 (1052)
|... ....+.+......+.|+
T Consensus 607 ~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 607 VCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp THHHHHTTCCEEECCTTSEEESCG
T ss_pred CCHHHHCCCCEEECCCCCCCCCCC
T ss_conf 201122661003437754347986
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=464.39 Aligned_cols=505 Identities=20% Similarity=0.252 Sum_probs=342.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CC--CCC------------CCEEEECCCCCEEEEEECCCCC
Q ss_conf 8999922499999999865679988656778999-----99--987------------7037306999648999825788
Q 001566 42 AESVPTTDSASLLSFKASISRDPSNLLATWNSST-----DH--CTW------------HGVTCDHFTGRVTALRITGKAT 102 (1052)
Q Consensus 42 ~~~~~~~d~~~ll~~k~~~~~~~~~~l~~W~~~~-----~~--C~w------------~gV~C~~~~~~v~~l~l~~~~~ 102 (1052)
+++...+|+.||++||+++. +| +|+.+. ++ |.| .||+|+. +++|+.+++.+..
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~- 334 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFG- 334 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTC-
T ss_pred CCCCCHHHHHHHHHHHHHCC-CC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCC-
T ss_conf 45463178999999999737-99-----9886898653367764034666545335768428369-9979899872478-
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCEEEE-CCCCCEECCCCCCCCC----CCCCEEEC------------CCCCCCCC---
Q ss_conf 9999876434324321007888785570-3798200289873587----87648981------------37503335---
Q 001566 103 PWPSKSSVISGTLSASIAKLTELRTLSV-PHNSFSGEIPAGVGEL----RLLEVLEL------------QGNNFSGK--- 162 (1052)
Q Consensus 103 ~~~~~~~~~~g~l~~~l~~l~~L~~L~L-~~n~l~~~~p~~~~~l----~~L~~L~L------------s~n~l~~~--- 162 (1052)
+.|.+|+++++|++|+.|+| ++|.+.|..|-..... ...+...+ ....+...
T Consensus 335 --------L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 335 --------AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp --------CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred --------CCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf --------999485577415556284301256335666422234454411567888777666654203751115678787
Q ss_pred --------CCCCCCCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCEEECCCCCCCC-----------------CCCCCC
Q ss_conf --------893243877788585223--43633588223399998679856874467-----------------556678
Q 001566 163 --------IPYQMSNLERLRVLNLSF--NSFSGEVPRGLIGNGELSVIDMSSNRLSG-----------------GLAIDS 215 (1052)
Q Consensus 163 --------~p~~~~~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~~~~~ 215 (1052)
.+........++.+.+.. |.+++ +|..+.++++|+.|+|++|++.+ .+|...
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HHHHCCCCCCCCCCCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 765073324322235442312040566676152-1188756999878979688678874653223322222244587444
Q ss_pred -CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCHHHCCCC-------CCCEEECCCCCCCCCCC
Q ss_conf -7545777779824786887778124799999989757982-433-4232100799-------98799942798977777
Q 001566 216 -SSECEFLTYLKLSDNFLTESIPKEIGKCRNLKNLLLDGNI-LEG-SIPKEIGTIS-------ELKVLDVSRNSLTDRIP 285 (1052)
Q Consensus 216 -~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~-l~~-~~p~~l~~l~-------~L~~L~L~~N~l~~~~p 285 (1052)
+..+++|++|+|++|.+.+.+|..++.+++|+.|++++|+ +++ .+|..++.++ +|+.|++++|+++ .+|
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCC
T ss_conf 0255999778987189887527387737999899989689876566461778752330155688319982289477-618
Q ss_pred C--CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 1--21037999803215665556678877865444689862222024782875689978755896444898742996799
Q 001566 286 V--ELADCSKLSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLLSRSLEVLWAPRANLGGRLPDNWSESCSLKVLNLGQ 363 (1052)
Q Consensus 286 ~--~l~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~ 363 (1052)
. .+.++++|+.|+++ +|.+. .+| .+..+++|+.|+|++
T Consensus 565 ~~~~l~~L~~L~~L~Ls--------------------------------------~N~l~-~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCV--------------------------------------HNKVR-HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp CHHHHTTCTTCCEEECT--------------------------------------TSCCC-BCC-CCCTTSEESEEECCS
T ss_pred CHHHHHCCCCCCEEECC--------------------------------------CCCCC-CCH-HHCCCCCCEEEECCC
T ss_conf 72355158988989897--------------------------------------99825-621-224798500798718
Q ss_pred CCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCC---CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9453347823203489-98996879947678998877---7874467112670223589987555676667444521223
Q 001566 364 NSLKGAVPKSLGMCRN-LTYLDLSLNNLEGYLPMQLP---VPCMVYFNVSQNNITGVLPRFENVSCDNHFGFQDLQYANV 439 (1052)
Q Consensus 364 N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~---~~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 439 (1052)
|.++ .+|..+..+++ |+.|+|++|+++ .+|..+. .+.|+.+++++|++++.+|.+..-
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~---------------- 666 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS---------------- 666 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC----------------
T ss_pred CCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHH----------------
T ss_conf 7125-035877525114989998499787-4764452255677788977088478864320000----------------
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 54565345313687522688334666765456531124542248844059745678897321236887522775575213
Q 001566 440 PVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSVNLSANLL 519 (1052)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l~l~~n~l 519 (1052)
+..+.......|+++.|.+
T Consensus 667 -------------------------------------------------------------l~~~~~~~L~~L~Ls~N~L 685 (876)
T 4ecn_A 667 -------------------------------------------------------------MDDYKGINASTVTLSYNEI 685 (876)
T ss_dssp -------------------------------------------------------------TTTCCCCCEEEEECCSSCC
T ss_pred -------------------------------------------------------------HCCCCCCCCCEEECCCCCC
T ss_conf -------------------------------------------------------------0013579768898319968
Q ss_pred CCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC-------CCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCC
Q ss_conf 575658897327675199755850133563235899-------9777997549858899960005--9744868975898
Q 001566 520 SGMSYEAFLLDCVQLVEFEAANNQISGSIAAGVGKL-------MKLQRLDLRGNRVSGSLPDELG--KLKFLKWILLGGN 590 (1052)
Q Consensus 520 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N 590 (1052)
+.++...+ ..+++|+.|++++|+++.+++..+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|
T Consensus 686 ~~lp~~~~-~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 686 QKFPTELF-ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CSCCHHHH-HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS
T ss_pred CCCCHHHH-CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHHHCCCCCCCEEEECCC
T ss_conf 86597887-138988999898996885496784555334321487158988899786-6527762442798698990899
Q ss_pred CCCCCCCHHHCCCCCCCEEECCC------CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 35976821111897786998589------978998831110234212001348647887774333444358121224646
Q 001566 591 NLTGEIPSQFGHLISLVVLDLSH------NALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNNL 664 (1052)
Q Consensus 591 ~l~~~~p~~~~~l~~L~~L~ls~------N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 664 (1052)
.+++ +|..+.++++|+.|++++ |++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|++++|++
T Consensus 764 ~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHC--CCCCEEECCCCCC
T ss_conf 7876-105661599988998879977665632444868883699878898879978-74087662--8778899979988
Q ss_pred CCCCCCC----CCCCCCCCCCCCCCC--CCC
Q ss_conf 6888976----445432213970245--789
Q 001566 665 SGHIPHL----QHLDCIAFKGNKYLA--SCP 689 (1052)
Q Consensus 665 ~~~~~~~----~~l~~~~~~~n~~~~--~~~ 689 (1052)
...-+.. .......+..|+..+ .|+
T Consensus 840 ~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 840 ISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred CCCCHHHCCCCCCCHHEEECCCCCCCCCCCC
T ss_conf 8117677256542311034688865537998
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=459.02 Aligned_cols=510 Identities=22% Similarity=0.215 Sum_probs=355.1
Q ss_pred CCCCCCCHHHCCCCCCCEEEECCCCCEECC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 434324321007888785570379820028-9873587876489813750333589324387778858522343633588
Q 001566 110 VISGTLSASIAKLTELRTLSVPHNSFSGEI-PAGVGELRLLEVLELQGNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVP 188 (1052)
Q Consensus 110 ~~~g~l~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 188 (1052)
.+++..+..+.++++|+.|+|++|.+.+.+ |..|.++++|++|+|++|.+.+..|..++++++|++|+|++|.+++.+|
T Consensus 35 ~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 114 (844)
T 3j0a_A 35 YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114 (844)
T ss_dssp CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCS
T ss_pred CCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 67832966776621370886789977444197785378778888798995853197671578665870176788973404
Q ss_pred CC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCHHH
Q ss_conf 22--33999986798568744675566787545777779824786887778124799--999989757982433423210
Q 001566 189 RG--LIGNGELSVIDMSSNRLSGGLAIDSSSECEFLTYLKLSDNFLTESIPKEIGKC--RNLKNLLLDGNILEGSIPKEI 264 (1052)
Q Consensus 189 ~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l--~~L~~L~l~~N~l~~~~p~~l 264 (1052)
.. +.++++|+.|++++|.+.+..+...+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..+..+
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCH
T ss_conf 67645566799988898786423256655763889898989898477667887535567750357897886665545533
Q ss_pred CCCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHC--CCCCC
Q ss_conf 07999------8799942798977777121037---9998032156655566788778654446898622220--24782
Q 001566 265 GTISE------LKVLDVSRNSLTDRIPVELADC---SKLSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLL--SRSLE 333 (1052)
Q Consensus 265 ~~l~~------L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~l~~n~~~~~l~~~~~~~~~~~~~~~~~l~~--~~~L~ 333 (1052)
+.+.+ |+.|++++|.+++..+..+... .++..+.++.+...... .++.+.......+.. ..+|+
T Consensus 195 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~-----~~~~l~~~~~~~f~~l~~~~L~ 269 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF-----GFHNIKDPDQNTFAGLARSSVR 269 (844)
T ss_dssp CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS-----SCSSSTTGGGTTTTTTTTSCCC
T ss_pred HHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCC-----CCCCCCCCCHHHHHCCCCCCCC
T ss_conf 22377223574007965788686567788876427441001121212234664-----4456688985565255547861
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCC
Q ss_conf 87568997875589644489874299679994533478232034899899687994767899887-77874467112670
Q 001566 334 VLWAPRANLGGRLPDNWSESCSLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGYLPMQL-PVPCMVYFNVSQNN 412 (1052)
Q Consensus 334 ~L~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~l~l~~N~ 412 (1052)
.|++++|.+.+..+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+ .++.|+.+++++|+
T Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred EEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 89897994551586345258999999897981898796883688899989898997885187884689999989898998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 22358998755567666744452122354565345313687522688334666765456531124542248844059745
Q 001566 413 ITGVLPRFENVSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMF 492 (1052)
Q Consensus 413 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~n~~ 492 (1052)
+++..+. .+.....+..+++++|.+.+. + ..+.+..+.+++|.+
T Consensus 350 i~~~~~~------------------------~~~~l~~L~~L~Ls~N~l~~i-~-----------~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 350 IAIIQDQ------------------------TFKFLEKLQTLDLRDNALTTI-H-----------FIPSIPDIFLSGNKL 393 (844)
T ss_dssp CCCCCSS------------------------CSCSCCCCCEEEEETCCSCCC-S-----------SCCSCSEEEEESCCC
T ss_pred CCCCCHH------------------------HHCCCCCCCEEECCCCCCCCC-C-----------CCCCCCHHCCCCCCC
T ss_conf 7762866------------------------613788899988989977861-6-----------889823200589972
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC--
Q ss_conf 6788973212368875227755752135756588973276751997558501335632-3589997779975498588--
Q 001566 493 NGSVPGERISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAA-GVGKLMKLQRLDLRGNRVS-- 569 (1052)
Q Consensus 493 ~~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-- 569 (1052)
+ .+|... .....++++.|.+..++...++..+++|+.|++++|++++..+. .+..+++|+.|++++|.++
T Consensus 394 ~-~l~~~~------~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 394 V-TLPKIN------LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp C-CCCCCC------TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred C-CCCCCC------CCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3-145545------543122145675345755666512776666667787125555433356687310024777736441
Q ss_pred ---CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC
Q ss_conf ---99960005974486897589835976821111897786998589978998831110234212001348647887774
Q 001566 570 ---GSLPDELGKLKFLKWILLGGNNLTGEIPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPV 646 (1052)
Q Consensus 570 ---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 646 (1052)
+..+..|.++++|+.|+|++|++++..|..|.++++|+.|++++|++++..|..+. ++|+.|++++|++++..|.
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHH
T ss_conf 01355355544755365777889856553955704501221569999978745710110--0455888988847888966
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 33344435812122464668889764
Q 001566 647 SFSTLVNLSALDLSFNNLSGHIPHLQ 672 (1052)
Q Consensus 647 ~~~~l~~L~~l~l~~N~l~~~~~~~~ 672 (1052)
.| .+|+.+++++|++.|.++...
T Consensus 545 ~~---~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 545 VF---VSLSVLDITHNKFICECELST 567 (844)
T ss_dssp CC---SSCCEEEEEEECCCCSSSCCS
T ss_pred HH---CCCCEEEECCCCCCCCCCCHH
T ss_conf 83---776889931997025366189
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=457.10 Aligned_cols=506 Identities=20% Similarity=0.170 Sum_probs=352.9
Q ss_pred CCCCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 88785570379820028987358787648981375033358932438777885852234363358822339999867985
Q 001566 123 TELRTLSVPHNSFSGEIPAGVGELRLLEVLELQGNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSVIDM 202 (1052)
Q Consensus 123 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 202 (1052)
+.++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..+.++++|+.|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCC--EEECCCCCC
Q ss_conf 687446755667875457777798247868877781247999999897579824334232100799987--999427989
Q 001566 203 SSNRLSGGLAIDSSSECEFLTYLKLSDNFLTESIPKEIGKCRNLKNLLLDGNILEGSIPKEIGTISELK--VLDVSRNSL 280 (1052)
Q Consensus 203 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~--~L~L~~N~l 280 (1052)
++|++.+ ++...+..+++|++|++++|.+++.....+..+++|+.|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 113 ~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred CCCCCCC-CCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCC
T ss_conf 1267665-781012237822389887983411476545687656877765684455496563322156403896679814
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCC----CC-----------CCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
Q ss_conf 777771210379998032156655566----78-----------877865444689862222024782875689978755
Q 001566 281 TDRIPVELADCSKLSVLVLTNIDASLD----LD-----------NSRGEFSAFDGGVPYELLLSRSLEVLWAPRANLGGR 345 (1052)
Q Consensus 281 ~~~~p~~l~~l~~L~~L~l~~n~~~~~----l~-----------~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 345 (1052)
.+..|..+ ...+|+.|++++|..... +. ........+....+..+.. .+++.+++.+|.+.+.
T Consensus 192 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 192 AGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESINLQKHYFFNI 269 (606)
T ss_dssp CEECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-SEEEEEECTTCCCSSC
T ss_pred CCCCHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHC-CCEEEEEEECCCCCCC
T ss_conf 75486673-001001355677266777765133564422002011026412268667430320-7505999445765855
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 89644489874299679994533478232034899899687994767899887-77874467112670223589987555
Q 001566 346 LPDNWSESCSLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGYLPMQL-PVPCMVYFNVSQNNITGVLPRFENVS 424 (1052)
Q Consensus 346 ~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~l~l~~N~l~~~~p~~~~~~ 424 (1052)
.+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..|..+ .+++|+.+++++|.+.+.+|.-
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---- 344 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG---- 344 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS----
T ss_pred CHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHH----
T ss_conf 7777445667888956288267-77821416546888977168768676023301576898889899744434624----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 67666744452122354565345313687522688334666765456531124542248844059745678897321236
Q 001566 425 CDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKC 504 (1052)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~ 504 (1052)
.+.....+..+++++|.+.+..+. ...+..+
T Consensus 345 -------------------~~~~l~~L~~L~l~~n~l~~~~~~------------------------------~~~~~~l 375 (606)
T 3t6q_A 345 -------------------CLENLENLRELDLSHDDIETSDCC------------------------------NLQLRNL 375 (606)
T ss_dssp -------------------TTTTCTTCCEEECCSSCCCEEEES------------------------------TTTTTTC
T ss_pred -------------------HHHCCCCCCEEECCCCCCCCCCCC------------------------------CHHCCCC
T ss_conf -------------------550667589887889966645675------------------------------2210567
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8875227755752135756588973276751997558501335632-358999777997549858899960005974486
Q 001566 505 NDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAA-GVGKLMKLQRLDLRGNRVSGSLPDELGKLKFLK 583 (1052)
Q Consensus 505 ~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 583 (1052)
+.++ .|+++.|.+.......+ ..+++|++|++++|++.+..+. .+..+++|+.|++++|.+++..|..+.++++|+
T Consensus 376 ~~L~--~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 376 SHLQ--SLNLSYNEPLSLKTEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TTCC--EEECCSCSCEEECTTTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred CCCC--EEECCCCCCCCCCHHHH-CCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCC
T ss_conf 8889--89898996775788873-47745776878888677756521241765588898989855776877873788788
Q ss_pred EEECCCCCCCCC---CCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 897589835976---82111189778699858997899883111023421200134864788777433344435812122
Q 001566 584 WILLGGNNLTGE---IPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLS 660 (1052)
Q Consensus 584 ~L~L~~N~l~~~---~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~ 660 (1052)
+|++++|.+++. .+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..|..+..++.| .++++
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred EEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECC
T ss_conf 89898998885434543124048876688799996670686463265678889898980686896684756651-89876
Q ss_pred CCCCCCCCCC----CCCCCCCCCCCCCCCCCCC
Q ss_conf 4646688897----6445432213970245789
Q 001566 661 FNNLSGHIPH----LQHLDCIAFKGNKYLASCP 689 (1052)
Q Consensus 661 ~N~l~~~~~~----~~~l~~~~~~~n~~~~~~~ 689 (1052)
+|++++.+|. +.+++.+.+.+||+.|+|+
T Consensus 532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 894142687662567787889677998616677
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=439.77 Aligned_cols=530 Identities=18% Similarity=0.146 Sum_probs=423.5
Q ss_pred CCCCCCCCCC--CCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCEECCCCCCCCCC
Q ss_conf 7789999998--77037306999648999825788999987643432432100788878557037982002898735878
Q 001566 70 TWNSSTDHCT--WHGVTCDHFTGRVTALRITGKATPWPSKSSVISGTLSASIAKLTELRTLSVPHNSFSGEIPAGVGELR 147 (1052)
Q Consensus 70 ~W~~~~~~C~--w~gV~C~~~~~~v~~l~l~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 147 (1052)
.|.+..+.|. +..|.|.+.....++-.++.....+.+..+.+++..+..+.++++|++|+|++|++.+..|..|.+++
T Consensus 2 ~~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 81 (606)
T 3t6q_A 2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH 81 (606)
T ss_dssp ----CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred CCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCC
T ss_conf 64568601236872377777980628677898675898158734717966725676652897889835524851136843
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 76489813750333589324387778858522343633588223399998679856874467556678754577777982
Q 001566 148 LLEVLELQGNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSVIDMSSNRLSGGLAIDSSSECEFLTYLKL 227 (1052)
Q Consensus 148 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 227 (1052)
+|++|+|++|.+++..|..++.+++|++|++++|.+++..+..+..+++|+.|++++|++.+ ++...+..+++|++|++
T Consensus 82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEC
T ss_conf 36764488985654586552344215376521267665781012237822389887983411-47654568765687776
Q ss_pred CCCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCC-------------
Q ss_conf 47868877781247999999--897579824334232100799987999427989777771210379-------------
Q 001566 228 SDNFLTESIPKEIGKCRNLK--NLLLDGNILEGSIPKEIGTISELKVLDVSRNSLTDRIPVELADCS------------- 292 (1052)
Q Consensus 228 s~N~l~~~~~~~l~~l~~L~--~L~l~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~------------- 292 (1052)
++|.+++..+..++.+++|+ .|++++|.+++..+..+.. .+|+.|++++|.. ++..+..+.
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCT
T ss_pred CCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHH---HHHHHHHCCCCCHHHEECHHHC
T ss_conf 56844554965633221564038966798147548667300-1001355677266---7777651335644220020110
Q ss_pred ------------------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf ------------------99803215665556678877865444689862222024782875689978755896444898
Q 001566 293 ------------------KLSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLLSRSLEVLWAPRANLGGRLPDNWSESC 354 (1052)
Q Consensus 293 ------------------~L~~L~l~~n~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 354 (1052)
+|+.|++++|.+. +..+..+..+++|+.|++++|.+. .+|..+..++
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~ 301 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFF--------------NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCS--------------SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT
T ss_pred CCCCCCCCHHHHCHHHCCCEEEEEEECCCCC--------------CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCC
T ss_conf 2641226866743032075059994457658--------------557777445667888956288267-7782141654
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-C-CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7429967999453347823203489989968799476789988-7-7787446711267022358998755567666744
Q 001566 355 SLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGYLPMQ-L-PVPCMVYFNVSQNNITGVLPRFENVSCDNHFGFQ 432 (1052)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~ 432 (1052)
+|+.|++++|.+++..|..+..+++|+.|++++|++.+.++.. + .+++|+.+++++|++++..+..
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------ 369 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN------------ 369 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST------------
T ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCC------------
T ss_conf 68889771687686760233015768988898997444346245506675898878899666456752------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 45212235456534531368752268833466676545653112454224884405974567889732123688752277
Q 001566 433 DLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSV 512 (1052)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l 512 (1052)
..+.....+..+++++|.+.+..| ..+..++.++ .|
T Consensus 370 ----------~~~~~l~~L~~L~l~~n~l~~~~~--------------------------------~~~~~l~~L~--~L 405 (606)
T 3t6q_A 370 ----------LQLRNLSHLQSLNLSYNEPLSLKT--------------------------------EAFKECPQLE--LL 405 (606)
T ss_dssp ----------TTTTTCTTCCEEECCSCSCEEECT--------------------------------TTTTTCTTCS--EE
T ss_pred ----------HHCCCCCCCCEEECCCCCCCCCCH--------------------------------HHHCCCCCCC--EE
T ss_conf ----------210567888989898996775788--------------------------------8734774577--68
Q ss_pred ECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC---CCCCCCCCCCCCCEEECCC
Q ss_conf 5575213575658897327675199755850133563235899977799754985889---9960005974486897589
Q 001566 513 NLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIAAGVGKLMKLQRLDLRGNRVSG---SLPDELGKLKFLKWILLGG 589 (1052)
Q Consensus 513 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~p~~~~~l~~L~~L~L~~ 589 (1052)
+++.|.+.......++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCC
T ss_conf 78888677756521241765588898989855776877873788788898989988854345431240488766887999
Q ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 83597682111189778699858997899883111023421200134864788777433344435812122464668889
Q 001566 590 NNLTGEIPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNNLSGHIP 669 (1052)
Q Consensus 590 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 669 (1052)
|++++..|..|.++++|+.|++++|++++..|..+..++.| .|++++|++++..|..+..+++|+.+++++|++.|.++
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 96670686463265678889898980686896684756651-89876894142687662567787889677998616677
Q ss_pred CCCCCCC
Q ss_conf 7644543
Q 001566 670 HLQHLDC 676 (1052)
Q Consensus 670 ~~~~l~~ 676 (1052)
......+
T Consensus 565 ~~~~~~w 571 (606)
T 3t6q_A 565 NIYFLEW 571 (606)
T ss_dssp GHHHHHH
T ss_pred CHHHHHH
T ss_conf 5789999
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=438.89 Aligned_cols=542 Identities=17% Similarity=0.111 Sum_probs=274.6
Q ss_pred CCCCC----CCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCEECCCCCCCCCCCCCE
Q ss_conf 99987----70373069996489998257889999876434324321007888785570379820028987358787648
Q 001566 76 DHCTW----HGVTCDHFTGRVTALRITGKATPWPSKSSVISGTLSASIAKLTELRTLSVPHNSFSGEIPAGVGELRLLEV 151 (1052)
Q Consensus 76 ~~C~w----~gV~C~~~~~~v~~l~l~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (1052)
++|.| ..|.|++.....++-.++.....+.+..+.+++..+..+.++++|++|++++|.+++..|..|.++++|++
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCEECCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCE
T ss_conf 77532178970574688845189888887678878889757737545557766748868877366439777306010688
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 98137503335893243877788585223436335882233999986798568744675566787545777779824786
Q 001566 152 LELQGNNFSGKIPYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSVIDMSSNRLSGGLAIDSSSECEFLTYLKLSDNF 231 (1052)
Q Consensus 152 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 231 (1052)
|+|++|.+++..|..++++++|++|++++|.+++..+..+.++++|+.|++++|++.+...+..+..+++|++|++++|.
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCC
T ss_conf 67879856304852207865378887037755544511348988779896878852325306867326777788766885
Q ss_pred CCCCCCCCCCCCCCCC----EEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 8877781247999999----8975798243342321007999879994279897-7777121037999803215665556
Q 001566 232 LTESIPKEIGKCRNLK----NLLLDGNILEGSIPKEIGTISELKVLDVSRNSLT-DRIPVELADCSKLSVLVLTNIDASL 306 (1052)
Q Consensus 232 l~~~~~~~l~~l~~L~----~L~l~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~l~~n~~~~ 306 (1052)
+++..+..++.+.+|+ .|++++|.+++..+..+.. .+|+.|++++|.+. +..|..+.++++|+.+.+.......
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred CEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCC-CEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 310573341212034200243004689753257110567-6043352467856166778886026656523141111036
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 6788778654446898622220247828756-899787558964448987429967999453347823203489989968
Q 001566 307 DLDNSRGEFSAFDGGVPYELLLSRSLEVLWA-PRANLGGRLPDNWSESCSLKVLNLGQNSLKGAVPKSLGMCRNLTYLDL 385 (1052)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l-~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 385 (1052)
...+..+....+..+..+ +++.+.+ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+.|++
T Consensus 244 -----~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l 314 (606)
T 3vq2_A 244 -----ERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSI 314 (606)
T ss_dssp -----SCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEE
T ss_pred -----CCCCCCCCHHHHHHHHHC-CHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCH-HHH-HCCCCCCCCEEEC
T ss_conf -----774102681776666543-4745012366555543222-354887898771476604-435-4334011778976
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 79947678998877787446711267022358998755567666744452122354565345313687522688334666
Q 001566 386 SLNNLEGYLPMQLPVPCMVYFNVSQNNITGVLPRFENVSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSL 465 (1052)
Q Consensus 386 ~~N~l~~~~p~~~~~~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 465 (1052)
++|++ +.+|.. .++.|+.+++++|+..+..+ + .....+..+++++|.+.+..
T Consensus 315 ~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~-~-------------------------~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 315 IRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK-K-------------------------VALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp ESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC-C-------------------------CCCTTCCEEECCSSCEEEEE
T ss_pred CCCCC-CCCCCC-CCCCCCEEECCCCCCCCCHH-H-------------------------CCCCCCCEEECCCCCCCCCC
T ss_conf 46667-654667-88755644544786853100-0-------------------------24898887977587368775
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 76545653112454224884405974567889732123688752277557521357565889732767519975585013
Q 001566 466 PLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVPGERISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQIS 545 (1052)
Q Consensus 466 p~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 545 (1052)
+ +| ..+..++.++ +|+++.|.+..++ ..+..+++|+.|++++|++.
T Consensus 367 ~-----------------------------~~-~~~~~~~~L~--~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 367 C-----------------------------CS-YSDLGTNSLR--HLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp E-----------------------------CC-HHHHCCSCCC--EEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEE
T ss_pred C-----------------------------HH-HHHCCCCCCC--EEECCCCCCCCCH--HHCCCCCCCCEEECCCCCCC
T ss_conf 2-----------------------------01-2214677554--8678899530005--54068888896589887058
Q ss_pred CCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 3563-235899977799754985889996000597448689758983597-68211118977869985899789988311
Q 001566 546 GSIA-AGVGKLMKLQRLDLRGNRVSGSLPDELGKLKFLKWILLGGNNLTG-EIPSQFGHLISLVVLDLSHNALTGSIPAS 623 (1052)
Q Consensus 546 ~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 623 (1052)
+..+ ..+..+++|++|++++|.+++..|..|.++++|++|++++|.+++ .+|..|..+++|+.|++++|++++..|..
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 75376456462137889896897874335553477878989898983798546776045788998989888577648656
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC---CC-CCCCCCCCCCCCCCCCC
Q ss_conf 10234212001348647887774333444358121224646688897---64-45432213970245789
Q 001566 624 LTKATKLESLFLAHNRLSGEIPVSFSTLVNLSALDLSFNNLSGHIPH---LQ-HLDCIAFKGNKYLASCP 689 (1052)
Q Consensus 624 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~---~~-~l~~~~~~~n~~~~~~~ 689 (1052)
+..+++|+.|++++|++++..|..|..+++|+.|++++|+++...+. +. ++..+.+.+||+.|+|+
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 1546468989898995787487770688768988898983766687675210217488762898664776
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=432.74 Aligned_cols=513 Identities=21% Similarity=0.203 Sum_probs=418.1
Q ss_pred CCCCCCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 7888785570379820028987358787648981375033358-932438777885852234363358822339999867
Q 001566 121 KLTELRTLSVPHNSFSGEIPAGVGELRLLEVLELQGNNFSGKI-PYQMSNLERLRVLNLSFNSFSGEVPRGLIGNGELSV 199 (1052)
Q Consensus 121 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 199 (1052)
..+++++|+|++|.+++..|..|.++++|++|+|++|...+.+ |..++++++|++|+|++|.+++..|..+.++++|+.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHCCC--CCCCEEEC
Q ss_conf 98568744675566-787545777779824786887778-124799999989757982433423210079--99879994
Q 001566 200 IDMSSNRLSGGLAI-DSSSECEFLTYLKLSDNFLTESIP-KEIGKCRNLKNLLLDGNILEGSIPKEIGTI--SELKVLDV 275 (1052)
Q Consensus 200 L~Ls~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~p~~l~~l--~~L~~L~L 275 (1052)
|+|++|.+.+.++. ..+..+++|++|++++|.+++..+ ..++.+++|+.|++++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred CCCCCCCCCCCCCCCCCC------CCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCC---------C
Q ss_conf 279897777712103799------9803215665556678877865444689862222024782875689---------9
Q 001566 276 SRNSLTDRIPVELADCSK------LSVLVLTNIDASLDLDNSRGEFSAFDGGVPYELLLSRSLEVLWAPR---------A 340 (1052)
Q Consensus 276 ~~N~l~~~~p~~l~~l~~------L~~L~l~~n~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~---------n 340 (1052)
+.|.+.+..|..+..+.+ |+.|++++|.+....... + .......++..+.+.. +
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~---~--------~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN---F--------SNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG---G--------GGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHH---H--------HHHCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 788666554553322377223574007965788686567788---8--------76427441001121212234664445
Q ss_pred CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCC
Q ss_conf 7875589644489--874299679994533478232034899899687994767899887-7787446711267022358
Q 001566 341 NLGGRLPDNWSES--CSLKVLNLGQNSLKGAVPKSLGMCRNLTYLDLSLNNLEGYLPMQL-PVPCMVYFNVSQNNITGVL 417 (1052)
Q Consensus 341 ~l~~~~p~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~l~l~~N~l~~~~ 417 (1052)
.+.+.....+..+ ++|+.|++++|.+.+..|..+..+++|+.|+|++|++++..+..+ .+++|+.|++++|++++..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 66889855652555478618989799455158634525899999989798189879688368889998989899788518
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 99875556766674445212235456534531368752268833466676545653112454224884405974567889
Q 001566 418 PRFENVSCDNHFGFQDLQYANVPVMGSISDENFVIIHDFSGNKFLGSLPLFAIGDGFLAAKYKPHYRLLLNNNMFNGSVP 497 (1052)
Q Consensus 418 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p 497 (1052)
|. .+.....+..+++++|.+.+..+. ....++.+..+.+++|.+++...
T Consensus 331 ~~------------------------~~~~l~~L~~L~L~~N~i~~~~~~-------~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 331 SS------------------------NFYGLPKVAYIDLQKNHIAIIQDQ-------TFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp SC------------------------SCSSCTTCCEEECCSCCCCCCCSS-------CSCSCCCCCEEEEETCCSCCCSS
T ss_pred HH------------------------HHCCCCCCCEEECCCCCCCCCCHH-------HHCCCCCCCEEECCCCCCCCCCC
T ss_conf 78------------------------846899999898989987762866-------61378889998898997786168
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCC-C
Q ss_conf 7321236887522775575213575658897327675199755850133563-2358999777997549858899960-0
Q 001566 498 GERISKCNDLQSFSVNLSANLLSGMSYEAFLLDCVQLVEFEAANNQISGSIA-AGVGKLMKLQRLDLRGNRVSGSLPD-E 575 (1052)
Q Consensus 498 ~~~~~~~~~l~~~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~-~ 575 (1052)
++.++ .++++.|.+..++.. ...++.+++++|++++... ..+..+++|+.|+|++|++++..+. .
T Consensus 380 ------~~~L~--~L~l~~N~l~~l~~~-----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 380 ------IPSIP--DIFLSGNKLVTLPKI-----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp ------CCSCS--EEEEESCCCCCCCCC-----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred ------CCCCC--HHCCCCCCCCCCCCC-----CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCC
T ss_conf ------89823--200589972314554-----55431221456753457556665127766666677871255554333
Q ss_pred CCCCCCCCEEECCCCCCC-----CCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 059744868975898359-----768211118977869985899789988311102342120013486478877743334
Q 001566 576 LGKLKFLKWILLGGNNLT-----GEIPSQFGHLISLVVLDLSHNALTGSIPASLTKATKLESLFLAHNRLSGEIPVSFST 650 (1052)
Q Consensus 576 ~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 650 (1052)
+..+++|+.|++++|.++ +..+..|.++++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~- 525 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP- 525 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH-
T ss_conf 5668731002477773644101355355544755365777889856553955704501221569999978745710110-
Q ss_pred CCCCCCEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 44358121224646688897-64454322139702457899
Q 001566 651 LVNLSALDLSFNNLSGHIPH-LQHLDCIAFKGNKYLASCPD 690 (1052)
Q Consensus 651 l~~L~~l~l~~N~l~~~~~~-~~~l~~~~~~~n~~~~~~~~ 690 (1052)
++|+.|++++|++++..|. +..+..+.+.+||+.|+|+.
T Consensus 526 -~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 526 -ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp -SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred -CCCCEEECCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCC
T ss_conf -0455888988847888966837768899319970253661
Done!